Query 017806
Match_columns 365
No_of_seqs 338 out of 3803
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 8.3E-29 1.8E-33 229.5 17.5 200 92-327 245-454 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 4.4E-28 9.6E-33 224.6 16.6 238 92-358 143-419 (966)
3 KOG1126 DNA-binding cell divis 99.9 2.2E-22 4.7E-27 189.2 16.4 200 92-327 414-623 (638)
4 TIGR00990 3a0801s09 mitochondr 99.9 5E-21 1.1E-25 191.4 25.1 201 95-321 327-568 (615)
5 KOG1126 DNA-binding cell divis 99.9 1.5E-21 3.3E-26 183.6 15.1 196 96-327 350-589 (638)
6 TIGR00990 3a0801s09 mitochondr 99.9 4.1E-20 8.9E-25 184.8 23.7 201 114-349 308-543 (615)
7 PRK15174 Vi polysaccharide exp 99.9 9.5E-21 2.1E-25 189.6 18.7 252 92-361 69-386 (656)
8 KOG1155 Anaphase-promoting com 99.8 2.5E-19 5.4E-24 162.0 20.6 193 95-323 258-494 (559)
9 PRK11447 cellulose synthase su 99.8 3.6E-18 7.9E-23 181.6 25.4 195 92-316 296-550 (1157)
10 PRK09782 bacteriophage N4 rece 99.8 2.6E-18 5.6E-23 176.6 21.8 154 138-327 556-709 (987)
11 KOG0547 Translocase of outer m 99.8 1.1E-18 2.3E-23 158.9 16.5 226 99-346 115-494 (606)
12 PRK15174 Vi polysaccharide exp 99.8 5.7E-18 1.2E-22 169.6 22.5 196 112-342 189-402 (656)
13 PRK09782 bacteriophage N4 rece 99.8 3.3E-18 7.2E-23 175.8 21.2 195 96-327 539-743 (987)
14 KOG1173 Anaphase-promoting com 99.8 4.4E-18 9.6E-23 157.4 19.5 216 92-355 305-530 (611)
15 KOG0547 Translocase of outer m 99.8 6.4E-18 1.4E-22 153.8 19.2 193 99-327 326-535 (606)
16 PRK12370 invasion protein regu 99.8 1.6E-17 3.4E-22 163.7 23.0 191 102-327 261-473 (553)
17 KOG1155 Anaphase-promoting com 99.8 1.3E-17 2.8E-22 151.0 19.4 181 97-313 328-525 (559)
18 PRK12370 invasion protein regu 99.8 3.5E-17 7.6E-22 161.3 24.3 184 92-311 288-491 (553)
19 PRK11788 tetratricopeptide rep 99.8 1.5E-17 3.2E-22 157.5 20.7 196 92-323 62-277 (389)
20 PRK11447 cellulose synthase su 99.8 1.8E-17 3.9E-22 176.3 23.6 207 92-327 378-669 (1157)
21 PRK15359 type III secretion sy 99.8 1E-17 2.2E-22 135.6 15.8 129 143-309 12-140 (144)
22 TIGR02521 type_IV_pilW type IV 99.8 1.1E-16 2.3E-21 139.4 22.8 181 97-313 29-221 (234)
23 TIGR02917 PEP_TPR_lipo putativ 99.8 6.3E-17 1.4E-21 168.0 25.0 228 93-350 595-873 (899)
24 KOG1125 TPR repeat-containing 99.8 3.9E-18 8.5E-23 158.4 13.2 163 134-324 295-527 (579)
25 COG3063 PilF Tfp pilus assembl 99.8 1.3E-16 2.8E-21 132.9 19.3 147 133-315 44-193 (250)
26 PRK11189 lipoprotein NlpI; Pro 99.8 1.9E-16 4E-21 144.0 21.8 204 97-353 62-276 (296)
27 PRK11189 lipoprotein NlpI; Pro 99.8 4.3E-17 9.4E-22 148.1 17.6 182 92-307 91-283 (296)
28 TIGR02917 PEP_TPR_lipo putativ 99.7 2.1E-16 4.6E-21 164.0 24.0 199 92-316 458-690 (899)
29 KOG0548 Molecular co-chaperone 99.7 3.2E-16 6.9E-21 144.7 19.7 241 103-359 6-471 (539)
30 KOG1125 TPR repeat-containing 99.7 1.6E-16 3.4E-21 147.8 15.8 185 92-312 312-559 (579)
31 PLN02789 farnesyltranstransfer 99.7 6E-16 1.3E-20 140.8 19.4 171 111-307 48-229 (320)
32 PF13429 TPR_15: Tetratricopep 99.7 9.7E-17 2.1E-21 145.1 13.6 190 92-318 71-271 (280)
33 PLN02789 farnesyltranstransfer 99.7 1.4E-15 3.1E-20 138.3 20.9 156 112-309 32-190 (320)
34 TIGR02521 type_IV_pilW type IV 99.7 1.6E-15 3.5E-20 131.9 20.2 155 133-322 40-196 (234)
35 PRK11788 tetratricopeptide rep 99.7 6.7E-16 1.5E-20 146.1 18.5 195 97-327 33-246 (389)
36 PRK10370 formate-dependent nit 99.7 2.3E-15 5E-20 128.2 19.4 150 112-297 28-180 (198)
37 PRK15359 type III secretion sy 99.7 8E-16 1.7E-20 124.5 15.5 120 121-265 14-140 (144)
38 COG3063 PilF Tfp pilus assembl 99.7 1E-14 2.2E-19 121.7 19.6 176 100-311 36-223 (250)
39 KOG1129 TPR repeat-containing 99.7 4.8E-16 1E-20 135.4 10.5 195 97-327 254-461 (478)
40 KOG0624 dsRNA-activated protei 99.6 1.4E-13 3E-18 120.9 22.3 210 92-327 99-373 (504)
41 KOG1173 Anaphase-promoting com 99.6 1.4E-14 3E-19 134.5 17.0 180 92-307 339-535 (611)
42 KOG2002 TPR-containing nuclear 99.6 1.4E-13 3.1E-18 134.8 22.4 192 92-309 157-390 (1018)
43 KOG1174 Anaphase-promoting com 99.6 3.1E-13 6.6E-18 121.3 22.6 219 92-359 225-516 (564)
44 TIGR02552 LcrH_SycD type III s 99.6 4.9E-14 1.1E-18 112.9 15.9 120 145-299 4-123 (135)
45 PRK10049 pgaA outer membrane p 99.6 2.3E-13 5E-18 139.2 24.8 120 94-233 44-173 (765)
46 KOG1129 TPR repeat-containing 99.6 6.5E-15 1.4E-19 128.4 11.2 222 102-359 226-461 (478)
47 KOG0550 Molecular chaperone (D 99.6 1.3E-14 2.8E-19 130.1 13.0 208 82-325 64-351 (486)
48 KOG0548 Molecular co-chaperone 99.6 8.9E-14 1.9E-18 128.7 18.7 172 101-308 300-473 (539)
49 TIGR03302 OM_YfiO outer membra 99.6 7.3E-14 1.6E-18 122.9 17.1 171 94-292 28-234 (235)
50 PF13429 TPR_15: Tetratricopep 99.6 1.7E-15 3.7E-20 137.0 6.7 225 95-356 40-277 (280)
51 KOG0553 TPR repeat-containing 99.6 2.9E-14 6.2E-19 123.7 13.5 118 160-312 83-200 (304)
52 KOG0553 TPR repeat-containing 99.6 2E-14 4.3E-19 124.6 12.2 112 131-267 88-199 (304)
53 KOG2002 TPR-containing nuclear 99.6 8.8E-14 1.9E-18 136.3 17.2 207 99-327 496-748 (1018)
54 PRK15179 Vi polysaccharide bio 99.6 1.2E-13 2.5E-18 137.5 18.2 137 152-323 80-216 (694)
55 KOG2003 TPR repeat-containing 99.6 8.5E-13 1.8E-17 119.8 21.7 187 92-314 483-679 (840)
56 TIGR03302 OM_YfiO outer membra 99.6 1.8E-13 3.8E-18 120.5 17.1 147 134-315 43-223 (235)
57 PRK10049 pgaA outer membrane p 99.6 4.5E-13 9.7E-18 137.1 22.6 186 112-351 249-464 (765)
58 KOG1840 Kinesin light chain [C 99.6 8.2E-14 1.8E-18 132.6 15.3 193 93-314 193-428 (508)
59 PRK15179 Vi polysaccharide bio 99.5 4.3E-13 9.4E-18 133.5 18.4 149 92-300 79-227 (694)
60 PRK10370 formate-dependent nit 99.5 6.4E-13 1.4E-17 113.2 17.0 110 188-316 55-165 (198)
61 TIGR00540 hemY_coli hemY prote 99.5 2.1E-12 4.6E-17 122.9 22.1 229 112-358 96-401 (409)
62 KOG2076 RNA polymerase III tra 99.5 1.9E-12 4.2E-17 126.2 21.8 200 92-320 166-508 (895)
63 KOG0550 Molecular chaperone (D 99.5 2.8E-13 6.1E-18 121.6 14.3 176 98-310 168-369 (486)
64 KOG0624 dsRNA-activated protei 99.5 1.1E-12 2.3E-17 115.4 16.4 204 92-327 31-255 (504)
65 COG2956 Predicted N-acetylgluc 99.5 2.7E-12 5.9E-17 112.0 18.8 196 92-323 62-277 (389)
66 cd05804 StaR_like StaR_like; a 99.5 6E-13 1.3E-17 124.4 15.6 195 95-322 2-213 (355)
67 COG5010 TadD Flp pilus assembl 99.5 2.5E-12 5.5E-17 109.7 17.7 147 136-317 78-224 (257)
68 PRK15363 pathogenicity island 99.5 1.4E-12 2.9E-17 104.3 14.7 107 150-291 26-133 (157)
69 TIGR02552 LcrH_SycD type III s 99.5 1.5E-12 3.2E-17 104.3 15.0 128 193-360 4-131 (135)
70 PRK10747 putative protoheme IX 99.5 3.6E-12 7.8E-17 120.8 20.1 240 102-360 87-394 (398)
71 KOG4162 Predicted calmodulin-b 99.5 1.3E-12 2.8E-17 125.5 16.5 217 92-349 471-789 (799)
72 KOG3060 Uncharacterized conser 99.5 4.2E-11 9.1E-16 101.5 22.9 165 136-351 64-228 (289)
73 KOG2003 TPR repeat-containing 99.5 2.9E-12 6.2E-17 116.4 16.1 213 103-351 423-663 (840)
74 PRK14574 hmsH outer membrane p 99.4 4.4E-12 9.5E-17 128.5 18.9 186 92-314 27-222 (822)
75 PLN03088 SGT1, suppressor of 99.4 3E-12 6.6E-17 119.1 16.3 115 161-310 5-119 (356)
76 COG5010 TadD Flp pilus assembl 99.4 1.3E-11 2.9E-16 105.3 18.6 165 139-358 48-212 (257)
77 KOG3060 Uncharacterized conser 99.4 5.7E-11 1.2E-15 100.7 22.2 171 112-314 64-244 (289)
78 PRK10747 putative protoheme IX 99.4 3.5E-11 7.6E-16 114.1 23.3 189 98-316 116-382 (398)
79 KOG1840 Kinesin light chain [C 99.4 4.3E-12 9.4E-17 120.9 15.7 188 100-316 242-471 (508)
80 KOG0495 HAT repeat protein [RN 99.4 8E-11 1.7E-15 111.4 21.6 195 92-312 611-868 (913)
81 PLN03088 SGT1, suppressor of 99.4 8.2E-12 1.8E-16 116.2 15.0 108 134-266 12-119 (356)
82 TIGR00540 hemY_coli hemY prote 99.4 2.1E-11 4.6E-16 116.1 17.8 188 92-316 180-391 (409)
83 KOG1156 N-terminal acetyltrans 99.4 1E-10 2.2E-15 110.7 21.7 240 92-350 34-462 (700)
84 PF06552 TOM20_plant: Plant sp 99.4 5.5E-12 1.2E-16 102.0 11.4 121 232-360 6-126 (186)
85 PRK15363 pathogenicity island 99.4 1.9E-11 4.2E-16 97.7 13.9 99 199-318 27-126 (157)
86 KOG4162 Predicted calmodulin-b 99.4 7.9E-11 1.7E-15 113.4 20.4 238 95-360 389-787 (799)
87 CHL00033 ycf3 photosystem I as 99.3 5.3E-11 1.1E-15 99.1 15.7 136 135-295 10-154 (168)
88 KOG1174 Anaphase-promoting com 99.3 4.9E-11 1.1E-15 107.4 15.5 182 92-309 327-519 (564)
89 KOG1127 TPR repeat-containing 99.3 1.1E-10 2.4E-15 115.0 18.1 243 92-356 485-892 (1238)
90 PRK02603 photosystem I assembl 99.3 1.5E-10 3.3E-15 96.7 16.6 129 155-311 32-167 (172)
91 KOG1128 Uncharacterized conser 99.3 1.5E-11 3.2E-16 117.8 11.4 200 94-316 393-608 (777)
92 CHL00033 ycf3 photosystem I as 99.3 1.1E-10 2.5E-15 97.1 15.6 102 136-251 47-154 (168)
93 PRK14720 transcript cleavage f 99.3 1.1E-10 2.4E-15 117.5 18.1 185 93-308 25-270 (906)
94 KOG2076 RNA polymerase III tra 99.3 2.3E-10 4.9E-15 112.0 19.3 146 135-315 150-300 (895)
95 PF06552 TOM20_plant: Plant sp 99.3 1.4E-10 3E-15 93.9 14.4 117 140-260 7-123 (186)
96 PRK14574 hmsH outer membrane p 99.3 1.8E-10 3.9E-15 117.0 17.8 157 135-327 45-201 (822)
97 PRK02603 photosystem I assembl 99.3 1.7E-10 3.6E-15 96.4 14.6 129 92-266 28-166 (172)
98 COG4783 Putative Zn-dependent 99.3 7.7E-10 1.7E-14 102.1 19.6 130 136-290 318-454 (484)
99 COG4783 Putative Zn-dependent 99.2 4.7E-10 1E-14 103.5 17.0 168 154-358 302-470 (484)
100 TIGR02795 tol_pal_ybgF tol-pal 99.2 3.8E-10 8.3E-15 87.8 14.3 107 158-299 2-114 (119)
101 KOG1128 Uncharacterized conser 99.2 9.1E-11 2E-15 112.5 12.6 161 95-291 453-617 (777)
102 PRK10153 DNA-binding transcrip 99.2 5.6E-10 1.2E-14 108.2 18.4 132 137-296 355-488 (517)
103 cd05804 StaR_like StaR_like; a 99.2 3.4E-10 7.5E-15 105.8 16.5 162 95-292 39-217 (355)
104 KOG1127 TPR repeat-containing 99.2 4.2E-10 9.2E-15 111.0 16.9 151 138-316 472-651 (1238)
105 PF13414 TPR_11: TPR repeat; P 99.2 9.2E-11 2E-15 82.1 8.5 68 156-248 1-69 (69)
106 PF13414 TPR_11: TPR repeat; P 99.2 8E-11 1.7E-15 82.4 8.0 68 204-292 1-69 (69)
107 cd00189 TPR Tetratricopeptide 99.2 4.9E-10 1.1E-14 82.3 12.4 99 160-293 2-100 (100)
108 COG2956 Predicted N-acetylgluc 99.2 7.8E-09 1.7E-13 90.7 21.4 162 99-296 107-284 (389)
109 KOG0495 HAT repeat protein [RN 99.2 2.7E-09 5.8E-14 101.3 19.5 231 99-358 516-784 (913)
110 KOG1156 N-terminal acetyltrans 99.2 2.1E-09 4.5E-14 102.0 18.4 148 135-317 18-165 (700)
111 COG4235 Cytochrome c biogenesi 99.2 1.4E-09 3E-14 95.4 15.7 125 138-296 136-262 (287)
112 PRK11906 transcriptional regul 99.1 2.9E-09 6.3E-14 98.8 17.3 134 138-297 272-408 (458)
113 KOG0543 FKBP-type peptidyl-pro 99.1 1.6E-09 3.5E-14 98.2 14.8 126 133-292 217-357 (397)
114 PF09976 TPR_21: Tetratricopep 99.1 3.9E-09 8.4E-14 85.5 15.6 136 112-288 4-145 (145)
115 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.3E-09 5E-14 83.3 12.1 96 135-255 13-114 (119)
116 COG4235 Cytochrome c biogenesi 99.1 7.1E-09 1.5E-13 90.9 15.5 112 187-316 137-248 (287)
117 PF12569 NARP1: NMDA receptor- 99.0 4.3E-08 9.3E-13 94.7 21.7 90 207-317 195-284 (517)
118 PRK10866 outer membrane biogen 99.0 3.9E-08 8.6E-13 86.5 19.6 163 135-315 43-232 (243)
119 PRK14720 transcript cleavage f 99.0 8E-09 1.7E-13 104.3 16.9 201 135-349 42-258 (906)
120 PF12895 Apc3: Anaphase-promot 99.0 8.8E-10 1.9E-14 80.4 7.3 79 137-234 2-82 (84)
121 KOG1130 Predicted G-alpha GTPa 99.0 4.5E-09 9.7E-14 95.0 12.5 200 99-316 55-336 (639)
122 PF13432 TPR_16: Tetratricopep 99.0 1.7E-09 3.6E-14 74.7 7.8 65 162-251 1-65 (65)
123 PF13432 TPR_16: Tetratricopep 99.0 1.7E-09 3.8E-14 74.6 7.5 65 210-295 1-65 (65)
124 KOG0543 FKBP-type peptidyl-pro 99.0 1.3E-08 2.8E-13 92.4 14.9 119 159-312 209-342 (397)
125 PRK15331 chaperone protein Sic 99.0 1.1E-08 2.4E-13 82.3 12.5 110 153-298 32-141 (165)
126 PF13525 YfiO: Outer membrane 99.0 7.4E-08 1.6E-12 82.6 18.7 160 135-312 16-195 (203)
127 PF12569 NARP1: NMDA receptor- 99.0 3.2E-08 6.9E-13 95.6 17.8 226 98-344 3-279 (517)
128 PRK11906 transcriptional regul 99.0 2.3E-08 4.9E-13 93.0 15.9 151 103-289 259-435 (458)
129 cd00189 TPR Tetratricopeptide 99.0 9.9E-09 2.1E-13 75.1 11.3 89 135-248 11-99 (100)
130 PF12895 Apc3: Anaphase-promot 98.9 2.2E-09 4.9E-14 78.2 6.7 80 186-287 3-84 (84)
131 PRK10803 tol-pal system protei 98.9 3E-08 6.6E-13 87.9 15.0 106 157-297 141-253 (263)
132 PRK10153 DNA-binding transcrip 98.9 6E-08 1.3E-12 94.2 18.0 139 154-318 333-476 (517)
133 PLN03081 pentatricopeptide (PP 98.9 2.4E-08 5.3E-13 101.8 14.6 159 138-317 339-550 (697)
134 KOG4234 TPR repeat-containing 98.9 2.5E-08 5.4E-13 81.9 11.4 109 160-303 97-210 (271)
135 PF04733 Coatomer_E: Coatomer 98.9 7.5E-09 1.6E-13 93.3 8.9 168 97-297 100-272 (290)
136 KOG4648 Uncharacterized conser 98.9 7E-09 1.5E-13 91.7 8.1 103 131-258 104-206 (536)
137 KOG2376 Signal recognition par 98.9 4.2E-07 9.1E-12 85.9 20.2 172 92-295 39-258 (652)
138 KOG1130 Predicted G-alpha GTPa 98.9 4E-08 8.7E-13 88.9 12.7 186 96-311 132-371 (639)
139 PRK10803 tol-pal system protei 98.9 6.8E-08 1.5E-12 85.7 14.1 92 137-253 156-253 (263)
140 KOG4648 Uncharacterized conser 98.9 1.2E-08 2.7E-13 90.2 9.1 110 161-305 100-209 (536)
141 PF04733 Coatomer_E: Coatomer 98.9 6.4E-08 1.4E-12 87.3 14.0 173 99-312 66-252 (290)
142 COG3071 HemY Uncharacterized e 98.8 1.5E-06 3.2E-11 78.7 22.0 190 97-316 115-382 (400)
143 PRK10866 outer membrane biogen 98.8 4.1E-07 9E-12 80.0 17.9 158 98-267 31-228 (243)
144 PF12688 TPR_5: Tetratrico pep 98.8 1.3E-07 2.8E-12 73.2 12.8 96 159-289 2-103 (120)
145 COG4785 NlpI Lipoprotein NlpI, 98.8 2.7E-07 5.9E-12 76.9 14.6 87 140-251 81-167 (297)
146 PLN03218 maturation of RBCL 1; 98.8 1.2E-06 2.6E-11 91.8 23.1 191 98-319 506-743 (1060)
147 PF14559 TPR_19: Tetratricopep 98.8 2.7E-08 6E-13 69.2 7.5 66 135-214 2-67 (68)
148 PF14938 SNAP: Soluble NSF att 98.8 6.7E-08 1.5E-12 87.3 12.1 169 113-316 28-217 (282)
149 KOG3785 Uncharacterized conser 98.8 2.5E-07 5.4E-12 82.4 15.0 165 112-308 34-232 (557)
150 PRK15331 chaperone protein Sic 98.8 4.8E-08 1E-12 78.6 9.6 104 199-323 30-133 (165)
151 KOG4340 Uncharacterized conser 98.8 2.3E-07 4.9E-12 80.9 14.1 153 135-315 21-198 (459)
152 PLN03218 maturation of RBCL 1; 98.8 1.7E-06 3.6E-11 90.8 22.8 197 96-319 469-708 (1060)
153 PLN03081 pentatricopeptide (PP 98.7 2.8E-07 6E-12 94.1 15.9 186 103-317 263-484 (697)
154 KOG3785 Uncharacterized conser 98.7 8.1E-07 1.7E-11 79.2 16.2 183 100-311 58-332 (557)
155 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 9.4E-08 2E-12 88.8 10.7 69 153-239 70-141 (453)
156 PF13525 YfiO: Outer membrane 98.7 2.9E-06 6.2E-11 72.8 18.6 171 157-357 4-184 (203)
157 PF14559 TPR_19: Tetratricopep 98.7 7.8E-08 1.7E-12 66.8 7.3 65 185-260 4-68 (68)
158 PF13371 TPR_9: Tetratricopept 98.7 1.2E-07 2.7E-12 66.8 8.5 70 165-259 2-71 (73)
159 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 9.2E-08 2E-12 88.9 9.5 69 201-290 70-141 (453)
160 PF14938 SNAP: Soluble NSF att 98.7 3.5E-08 7.7E-13 89.1 6.6 159 100-294 36-229 (282)
161 COG3071 HemY Uncharacterized e 98.7 5.6E-06 1.2E-10 75.0 20.3 227 112-356 96-390 (400)
162 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 6.3E-07 1.4E-11 83.6 14.8 112 137-286 182-293 (395)
163 PF13371 TPR_9: Tetratricopept 98.7 1.7E-07 3.7E-12 66.1 8.5 69 213-302 2-70 (73)
164 KOG4234 TPR repeat-containing 98.7 3.6E-07 7.9E-12 75.2 11.2 99 132-255 103-206 (271)
165 PF13424 TPR_12: Tetratricopep 98.7 2.8E-08 6E-13 71.3 4.3 74 203-290 2-75 (78)
166 PF13424 TPR_12: Tetratricopep 98.6 5.2E-08 1.1E-12 69.8 5.3 70 155-242 2-78 (78)
167 COG4785 NlpI Lipoprotein NlpI, 98.6 3.2E-07 7E-12 76.4 8.9 105 157-296 64-168 (297)
168 PF09976 TPR_21: Tetratricopep 98.6 2.1E-06 4.6E-11 69.4 13.7 108 188-317 27-140 (145)
169 COG0457 NrfG FOG: TPR repeat [ 98.6 1E-05 2.3E-10 68.9 18.9 164 94-293 90-268 (291)
170 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.9E-06 4.1E-11 80.5 14.7 105 188-316 185-289 (395)
171 PLN03077 Protein ECB2; Provisi 98.6 3.8E-06 8.3E-11 87.8 18.5 151 136-317 536-713 (857)
172 KOG2376 Signal recognition par 98.5 2.5E-06 5.5E-11 80.7 15.0 174 112-320 24-249 (652)
173 KOG4642 Chaperone-dependent E3 98.5 4E-07 8.6E-12 76.9 8.4 91 133-241 19-109 (284)
174 PF13512 TPR_18: Tetratricopep 98.5 3.9E-06 8.5E-11 66.2 13.5 116 157-297 9-135 (142)
175 PF12688 TPR_5: Tetratrico pep 98.5 4E-06 8.7E-11 64.9 13.5 90 207-317 2-97 (120)
176 COG1729 Uncharacterized protei 98.5 2.9E-06 6.3E-11 73.8 13.8 104 122-255 144-253 (262)
177 KOG4555 TPR repeat-containing 98.5 3.9E-06 8.4E-11 64.4 12.6 100 161-295 46-149 (175)
178 COG1729 Uncharacterized protei 98.5 4.4E-06 9.4E-11 72.7 14.7 104 161-299 144-253 (262)
179 COG4105 ComL DNA uptake lipopr 98.5 3.8E-05 8.2E-10 66.4 19.9 163 118-312 33-221 (254)
180 COG4700 Uncharacterized protei 98.5 4E-05 8.6E-10 62.7 18.3 133 145-314 77-212 (251)
181 KOG1915 Cell cycle control pro 98.5 5.9E-05 1.3E-09 70.0 21.2 162 92-290 315-500 (677)
182 COG0457 NrfG FOG: TPR repeat [ 98.5 7.2E-05 1.6E-09 63.6 21.2 175 99-309 59-250 (291)
183 KOG4642 Chaperone-dependent E3 98.4 7.3E-07 1.6E-11 75.4 7.3 84 186-290 24-107 (284)
184 PF13512 TPR_18: Tetratricopep 98.4 9.8E-06 2.1E-10 64.0 12.8 101 135-253 21-135 (142)
185 KOG3081 Vesicle coat complex C 98.4 4.9E-05 1.1E-09 65.6 17.9 168 94-297 103-278 (299)
186 KOG4340 Uncharacterized conser 98.4 3.2E-05 7E-10 67.7 17.0 201 92-314 37-329 (459)
187 KOG4555 TPR repeat-containing 98.4 8.8E-06 1.9E-10 62.5 11.8 83 135-235 54-140 (175)
188 PLN03077 Protein ECB2; Provisi 98.4 2.6E-05 5.5E-10 81.7 19.6 105 188-319 540-649 (857)
189 COG4700 Uncharacterized protei 98.4 9.9E-05 2.2E-09 60.4 17.9 107 135-267 100-209 (251)
190 COG4105 ComL DNA uptake lipopr 98.3 9.9E-05 2.1E-09 63.8 18.1 169 97-294 32-236 (254)
191 PRK04841 transcriptional regul 98.3 3.3E-05 7.2E-10 81.3 18.1 194 100-322 492-758 (903)
192 PRK04841 transcriptional regul 98.3 3.7E-05 8E-10 81.0 18.5 189 99-316 409-633 (903)
193 KOG0376 Serine-threonine phosp 98.3 8.7E-07 1.9E-11 82.2 5.0 105 185-310 17-121 (476)
194 PF13428 TPR_14: Tetratricopep 98.2 3.4E-06 7.4E-11 53.0 5.3 43 158-214 1-43 (44)
195 PF13428 TPR_14: Tetratricopep 98.2 3.1E-06 6.7E-11 53.2 5.0 43 251-303 1-43 (44)
196 PF13431 TPR_17: Tetratricopep 98.2 1.9E-06 4.2E-11 50.7 3.6 33 194-230 1-33 (34)
197 KOG3081 Vesicle coat complex C 98.2 0.00035 7.6E-09 60.5 18.2 141 134-312 118-258 (299)
198 KOG0376 Serine-threonine phosp 98.2 2.7E-06 6E-11 79.0 5.6 106 135-265 15-120 (476)
199 KOG2796 Uncharacterized conser 98.1 0.00019 4.1E-09 61.9 15.1 135 135-304 188-332 (366)
200 PF13431 TPR_17: Tetratricopep 98.1 4.1E-06 8.9E-11 49.3 3.2 28 146-173 1-28 (34)
201 KOG2471 TPR repeat-containing 98.1 4.9E-05 1.1E-09 70.7 11.4 146 136-309 218-383 (696)
202 KOG0545 Aryl-hydrocarbon recep 98.0 6.3E-05 1.4E-09 64.1 10.6 105 158-297 178-300 (329)
203 KOG1586 Protein required for f 98.0 0.0014 3.1E-08 55.7 18.5 156 112-300 26-193 (288)
204 KOG0545 Aryl-hydrocarbon recep 98.0 0.00012 2.5E-09 62.6 11.7 73 157-254 229-301 (329)
205 KOG0530 Protein farnesyltransf 98.0 0.0073 1.6E-07 52.4 22.4 165 112-307 38-233 (318)
206 PF00515 TPR_1: Tetratricopept 98.0 1.5E-05 3.3E-10 46.9 4.4 34 158-205 1-34 (34)
207 KOG0551 Hsp90 co-chaperone CNS 98.0 6.9E-05 1.5E-09 66.6 10.2 100 160-294 83-186 (390)
208 KOG1941 Acetylcholine receptor 97.9 0.00096 2.1E-08 60.2 17.1 162 99-290 83-275 (518)
209 KOG1941 Acetylcholine receptor 97.9 0.00037 8.1E-09 62.8 14.3 148 137-313 96-264 (518)
210 KOG1070 rRNA processing protei 97.9 0.0046 9.9E-08 64.7 23.4 194 92-322 1451-1661(1710)
211 PF00515 TPR_1: Tetratricopept 97.9 1.9E-05 4E-10 46.5 4.0 34 251-294 1-34 (34)
212 PF07719 TPR_2: Tetratricopept 97.9 3.8E-05 8.2E-10 45.0 5.0 34 158-205 1-34 (34)
213 PF04184 ST7: ST7 protein; In 97.9 0.00087 1.9E-08 63.1 15.9 183 135-357 179-389 (539)
214 KOG1308 Hsp70-interacting prot 97.9 9.5E-06 2.1E-10 72.3 2.9 89 136-249 126-214 (377)
215 PF03704 BTAD: Bacterial trans 97.9 0.0011 2.4E-08 53.4 15.0 114 112-249 18-135 (146)
216 PF07719 TPR_2: Tetratricopept 97.8 4.5E-05 9.8E-10 44.7 4.7 34 251-294 1-34 (34)
217 KOG1915 Cell cycle control pro 97.8 0.0013 2.8E-08 61.4 16.0 160 97-294 71-240 (677)
218 KOG3617 WD40 and TPR repeat-co 97.8 0.00073 1.6E-08 66.9 15.1 122 107-248 834-1004(1416)
219 PF12968 DUF3856: Domain of Un 97.8 0.0011 2.5E-08 50.1 12.8 91 186-290 23-129 (144)
220 PF04184 ST7: ST7 protein; In 97.8 0.00062 1.3E-08 64.0 13.9 177 92-297 195-382 (539)
221 KOG2796 Uncharacterized conser 97.8 0.0004 8.7E-09 60.0 11.3 140 159-327 178-318 (366)
222 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00027 5.9E-09 62.9 9.3 87 131-235 88-178 (390)
223 PF05843 Suf: Suppressor of fo 97.7 0.0018 3.8E-08 58.5 14.9 127 137-298 14-144 (280)
224 KOG2047 mRNA splicing factor [ 97.7 0.0083 1.8E-07 58.2 19.5 171 92-300 342-552 (835)
225 KOG2047 mRNA splicing factor [ 97.6 0.013 2.8E-07 56.9 20.1 158 100-292 388-581 (835)
226 KOG1586 Protein required for f 97.6 0.0024 5.1E-08 54.4 13.6 128 134-296 83-230 (288)
227 KOG2053 Mitochondrial inherita 97.6 0.0028 6.1E-08 63.4 16.1 106 136-267 21-126 (932)
228 PF13281 DUF4071: Domain of un 97.6 0.0058 1.3E-07 56.6 16.9 114 137-267 154-275 (374)
229 PF05843 Suf: Suppressor of fo 97.6 0.0033 7.2E-08 56.7 15.0 117 160-311 3-123 (280)
230 KOG1308 Hsp70-interacting prot 97.5 2.4E-05 5.1E-10 69.8 0.7 85 188-293 130-214 (377)
231 KOG3617 WD40 and TPR repeat-co 97.5 0.0049 1.1E-07 61.3 15.9 149 112-290 812-996 (1416)
232 COG0790 FOG: TPR repeat, SEL1 97.5 0.011 2.3E-07 53.7 17.5 171 112-310 53-237 (292)
233 PF10300 DUF3808: Protein of u 97.5 0.0043 9.2E-08 60.1 15.2 150 113-290 201-376 (468)
234 KOG1070 rRNA processing protei 97.4 0.0055 1.2E-07 64.1 15.7 163 100-301 1501-1676(1710)
235 PF13181 TPR_8: Tetratricopept 97.4 0.00033 7.3E-09 40.9 4.0 34 251-294 1-34 (34)
236 PF04781 DUF627: Protein of un 97.4 0.0058 1.3E-07 46.0 11.4 103 164-290 2-107 (111)
237 KOG3824 Huntingtin interacting 97.3 0.00065 1.4E-08 60.0 7.0 82 115-215 112-193 (472)
238 PF13181 TPR_8: Tetratricopept 97.3 0.00045 9.8E-09 40.3 4.2 33 159-205 2-34 (34)
239 KOG2471 TPR repeat-containing 97.3 0.00045 9.7E-09 64.5 5.8 82 158-264 283-382 (696)
240 KOG2610 Uncharacterized conser 97.3 0.007 1.5E-07 54.3 12.6 118 164-316 109-230 (491)
241 KOG2610 Uncharacterized conser 97.2 0.006 1.3E-07 54.7 11.7 118 135-287 114-235 (491)
242 KOG1585 Protein required for f 97.2 0.12 2.6E-06 44.6 19.4 111 138-267 45-166 (308)
243 KOG1550 Extracellular protein 97.2 0.014 3.1E-07 57.8 15.3 163 116-307 228-408 (552)
244 COG3898 Uncharacterized membra 97.1 0.16 3.5E-06 46.8 19.9 92 188-293 170-295 (531)
245 PF10300 DUF3808: Protein of u 97.1 0.025 5.4E-07 54.9 15.6 154 138-311 202-356 (468)
246 COG2976 Uncharacterized protei 97.0 0.019 4.2E-07 47.7 12.2 139 114-295 48-193 (207)
247 KOG1585 Protein required for f 97.0 0.045 9.8E-07 47.2 14.7 176 100-307 32-240 (308)
248 KOG2053 Mitochondrial inherita 97.0 0.031 6.7E-07 56.3 15.6 105 186-312 23-127 (932)
249 PF03704 BTAD: Bacterial trans 97.0 0.036 7.8E-07 44.5 13.5 81 188-289 22-124 (146)
250 KOG2396 HAT (Half-A-TPR) repea 96.9 0.013 2.9E-07 55.2 11.1 93 188-300 87-179 (568)
251 KOG4507 Uncharacterized conser 96.9 0.0044 9.6E-08 59.4 8.0 98 188-306 623-721 (886)
252 COG3118 Thioredoxin domain-con 96.8 0.072 1.6E-06 47.3 14.8 123 159-309 135-286 (304)
253 PF13174 TPR_6: Tetratricopept 96.8 0.0033 7.2E-08 36.1 4.6 33 159-205 1-33 (33)
254 COG3898 Uncharacterized membra 96.8 0.42 9.2E-06 44.2 21.8 192 97-315 118-349 (531)
255 PF09986 DUF2225: Uncharacteri 96.8 0.035 7.5E-07 47.8 12.4 102 188-303 93-208 (214)
256 KOG3824 Huntingtin interacting 96.7 0.0032 7E-08 55.7 5.7 66 223-305 129-194 (472)
257 KOG0529 Protein geranylgeranyl 96.7 0.11 2.5E-06 48.0 15.6 153 140-309 45-197 (421)
258 COG3118 Thioredoxin domain-con 96.6 0.11 2.3E-06 46.3 14.5 102 134-247 144-266 (304)
259 KOG4507 Uncharacterized conser 96.6 0.011 2.3E-07 56.8 8.9 103 135-262 618-721 (886)
260 PF13176 TPR_7: Tetratricopept 96.6 0.0037 8.1E-08 37.1 3.9 28 160-201 1-28 (36)
261 PF13174 TPR_6: Tetratricopept 96.6 0.005 1.1E-07 35.4 4.2 33 252-294 1-33 (33)
262 PRK10941 hypothetical protein; 96.5 0.022 4.7E-07 50.7 9.8 67 133-213 190-256 (269)
263 PF08424 NRDE-2: NRDE-2, neces 96.5 0.098 2.1E-06 48.2 14.5 161 92-291 12-184 (321)
264 COG4649 Uncharacterized protei 96.5 0.17 3.8E-06 41.4 13.8 161 106-308 46-213 (221)
265 KOG1550 Extracellular protein 96.5 0.22 4.7E-06 49.6 17.8 143 138-308 226-373 (552)
266 PF02259 FAT: FAT domain; Int 96.5 0.096 2.1E-06 48.6 14.4 142 135-294 157-342 (352)
267 PF13176 TPR_7: Tetratricopept 96.5 0.005 1.1E-07 36.5 3.7 28 253-290 1-28 (36)
268 PF02259 FAT: FAT domain; Int 96.4 0.21 4.6E-06 46.3 16.3 168 155-346 143-341 (352)
269 smart00028 TPR Tetratricopepti 96.4 0.0072 1.6E-07 33.7 4.1 33 159-205 2-34 (34)
270 PF08424 NRDE-2: NRDE-2, neces 96.4 0.82 1.8E-05 42.1 20.9 125 145-290 6-131 (321)
271 PRK13184 pknD serine/threonine 96.3 0.15 3.3E-06 53.2 15.7 114 181-309 484-600 (932)
272 PRK10941 hypothetical protein; 96.3 0.056 1.2E-06 48.2 11.1 77 159-260 182-258 (269)
273 PF14561 TPR_20: Tetratricopep 96.3 0.061 1.3E-06 39.3 9.5 70 143-230 7-78 (90)
274 PF09613 HrpB1_HrpK: Bacterial 96.3 0.22 4.7E-06 40.4 13.3 112 160-309 12-123 (160)
275 smart00028 TPR Tetratricopepti 96.3 0.0078 1.7E-07 33.6 3.9 33 252-294 2-34 (34)
276 PF04910 Tcf25: Transcriptiona 96.3 0.19 4.1E-06 47.0 14.8 149 198-360 32-226 (360)
277 PF04781 DUF627: Protein of un 96.2 0.067 1.4E-06 40.3 9.4 99 134-246 6-107 (111)
278 PF13281 DUF4071: Domain of un 96.2 0.34 7.4E-06 45.1 15.7 130 157-310 140-274 (374)
279 KOG2300 Uncharacterized conser 96.2 0.58 1.3E-05 44.5 17.0 165 112-316 287-506 (629)
280 PF14561 TPR_20: Tetratricopep 96.2 0.12 2.7E-06 37.7 10.4 66 190-266 6-73 (90)
281 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.033 7E-07 36.2 6.5 44 159-216 2-45 (53)
282 COG3914 Spy Predicted O-linked 96.1 0.12 2.7E-06 49.9 12.9 130 143-306 50-187 (620)
283 KOG0530 Protein farnesyltransf 96.1 0.86 1.9E-05 39.9 20.9 191 92-309 70-273 (318)
284 PF09613 HrpB1_HrpK: Bacterial 96.1 0.14 3E-06 41.5 11.1 88 208-316 12-99 (160)
285 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.046 1E-06 35.5 6.8 45 252-306 2-46 (53)
286 KOG0985 Vesicle coat protein c 96.0 0.28 6.1E-06 50.5 15.3 131 156-309 1102-1327(1666)
287 COG3914 Spy Predicted O-linked 96.0 0.22 4.8E-06 48.2 13.8 133 188-353 47-181 (620)
288 PF13374 TPR_10: Tetratricopep 95.9 0.024 5.1E-07 34.4 5.0 36 206-245 2-37 (42)
289 KOG1310 WD40 repeat protein [G 95.9 0.04 8.7E-07 52.4 8.4 97 181-295 383-479 (758)
290 COG0790 FOG: TPR repeat, SEL1 95.9 0.99 2.1E-05 40.7 17.4 178 99-295 73-271 (292)
291 KOG2396 HAT (Half-A-TPR) repea 95.9 0.14 3E-06 48.7 11.6 91 142-257 89-180 (568)
292 KOG1914 mRNA cleavage and poly 95.6 1.1 2.4E-05 43.2 16.5 162 146-318 267-458 (656)
293 KOG3616 Selective LIM binding 95.4 0.61 1.3E-05 46.6 14.5 65 252-316 825-903 (1636)
294 KOG0529 Protein geranylgeranyl 95.4 0.58 1.3E-05 43.5 13.7 148 138-305 89-239 (421)
295 PF12968 DUF3856: Domain of Un 95.2 0.83 1.8E-05 35.0 11.6 86 135-238 20-128 (144)
296 cd02682 MIT_AAA_Arch MIT: doma 95.2 0.21 4.5E-06 34.9 7.9 53 210-266 10-62 (75)
297 COG4976 Predicted methyltransf 95.2 0.036 7.8E-07 47.3 4.9 57 136-206 7-63 (287)
298 PF04910 Tcf25: Transcriptiona 95.1 0.14 3E-06 47.9 9.1 178 92-293 33-225 (360)
299 KOG3364 Membrane protein invol 94.9 1.1 2.5E-05 35.1 12.0 85 157-263 31-117 (149)
300 PF08631 SPO22: Meiosis protei 94.9 2.2 4.7E-05 38.4 16.0 123 136-290 5-150 (278)
301 KOG3807 Predicted membrane pro 94.8 1.6 3.4E-05 39.6 14.2 146 92-258 211-403 (556)
302 COG5191 Uncharacterized conser 94.7 0.06 1.3E-06 48.0 5.1 88 192-300 93-181 (435)
303 TIGR02561 HrpB1_HrpK type III 94.7 1.5 3.2E-05 35.1 12.4 69 188-267 26-94 (153)
304 PF09986 DUF2225: Uncharacteri 94.6 0.68 1.5E-05 39.9 11.4 105 138-260 91-209 (214)
305 cd02683 MIT_1 MIT: domain cont 94.5 0.36 7.7E-06 34.1 7.9 30 223-252 19-48 (77)
306 COG4976 Predicted methyltransf 94.5 0.065 1.4E-06 45.7 4.7 53 188-251 11-63 (287)
307 COG2912 Uncharacterized conser 94.4 0.21 4.6E-06 44.0 7.8 69 133-215 190-258 (269)
308 PF13374 TPR_10: Tetratricopep 94.3 0.1 2.3E-06 31.4 4.4 31 158-202 2-32 (42)
309 KOG1310 WD40 repeat protein [G 94.3 0.26 5.5E-06 47.2 8.6 82 135-231 385-466 (758)
310 KOG1914 mRNA cleavage and poly 94.2 4.5 9.7E-05 39.3 16.4 163 115-311 308-488 (656)
311 COG3629 DnrI DNA-binding trans 94.0 0.86 1.9E-05 40.7 11.0 75 157-249 152-226 (280)
312 PF08631 SPO22: Meiosis protei 94.0 4.5 9.8E-05 36.3 17.2 113 186-309 7-135 (278)
313 COG5191 Uncharacterized conser 93.9 0.14 3E-06 45.8 5.7 86 147-257 96-182 (435)
314 TIGR02561 HrpB1_HrpK type III 93.8 1.1 2.4E-05 35.8 10.0 77 223-316 23-99 (153)
315 PF10602 RPN7: 26S proteasome 93.7 0.68 1.5E-05 38.6 9.5 101 158-291 36-143 (177)
316 KOG3364 Membrane protein invol 93.5 3 6.5E-05 32.8 12.7 87 205-309 31-119 (149)
317 PF10373 EST1_DNA_bind: Est1 D 93.4 0.35 7.6E-06 43.3 7.8 62 143-218 1-62 (278)
318 PRK13184 pknD serine/threonine 93.4 1.1 2.4E-05 46.9 12.1 104 131-253 482-588 (932)
319 KOG4814 Uncharacterized conser 93.3 3.6 7.8E-05 40.7 14.4 100 116-233 346-451 (872)
320 PRK15180 Vi polysaccharide bio 93.2 0.45 9.8E-06 45.1 8.2 122 137-293 302-423 (831)
321 cd02678 MIT_VPS4 MIT: domain c 93.2 0.98 2.1E-05 31.7 8.1 44 188-250 3-46 (75)
322 PF10373 EST1_DNA_bind: Est1 D 93.1 0.41 9E-06 42.8 7.8 62 191-263 1-62 (278)
323 COG2976 Uncharacterized protei 93.1 1.1 2.4E-05 37.5 9.3 88 135-249 100-191 (207)
324 cd02681 MIT_calpain7_1 MIT: do 93.0 1.2 2.5E-05 31.4 8.2 40 189-247 4-43 (76)
325 KOG2422 Uncharacterized conser 92.5 9.1 0.0002 37.5 15.8 144 186-343 252-431 (665)
326 KOG2300 Uncharacterized conser 92.5 7.6 0.00016 37.3 15.0 105 159-296 8-124 (629)
327 KOG1258 mRNA processing protei 92.2 13 0.00027 36.6 19.5 107 136-267 309-416 (577)
328 PF10579 Rapsyn_N: Rapsyn N-te 92.0 1.8 4E-05 30.4 8.0 65 118-201 5-72 (80)
329 KOG4814 Uncharacterized conser 91.6 2.8 6E-05 41.4 11.4 82 188-290 370-457 (872)
330 PF12862 Apc5: Anaphase-promot 91.3 0.74 1.6E-05 33.8 6.0 59 223-291 11-71 (94)
331 PF07079 DUF1347: Protein of u 91.3 14 0.0003 35.3 16.3 110 139-286 395-520 (549)
332 PF10516 SHNi-TPR: SHNi-TPR; 91.1 0.57 1.2E-05 28.0 4.1 33 207-243 2-34 (38)
333 smart00745 MIT Microtubule Int 91.0 2.4 5.2E-05 29.7 8.1 44 188-250 5-48 (77)
334 cd02684 MIT_2 MIT: domain cont 91.0 2.4 5.1E-05 29.8 7.9 43 188-249 3-45 (75)
335 COG2912 Uncharacterized conser 90.9 2.2 4.8E-05 37.7 9.3 75 160-259 183-257 (269)
336 KOG3783 Uncharacterized conser 90.8 17 0.00037 35.4 19.6 230 92-361 260-545 (546)
337 PF10516 SHNi-TPR: SHNi-TPR; 90.5 0.59 1.3E-05 27.9 3.8 30 159-202 2-31 (38)
338 PF07720 TPR_3: Tetratricopept 90.4 1.1 2.5E-05 26.3 4.9 33 159-205 2-36 (36)
339 KOG1839 Uncharacterized protei 89.6 1.3 2.8E-05 47.1 7.8 116 188-317 948-1079(1236)
340 PF12862 Apc5: Anaphase-promot 89.5 3.1 6.7E-05 30.5 8.0 51 188-242 14-73 (94)
341 cd02656 MIT MIT: domain contai 89.2 4 8.6E-05 28.5 8.0 27 223-249 19-45 (75)
342 PF04212 MIT: MIT (microtubule 89.2 5.4 0.00012 27.3 8.5 28 223-250 18-45 (69)
343 cd02677 MIT_SNX15 MIT: domain 89.1 5.1 0.00011 28.0 8.3 43 188-249 3-45 (75)
344 COG2909 MalT ATP-dependent tra 88.8 31 0.00066 35.8 16.3 179 103-315 419-638 (894)
345 PF07721 TPR_4: Tetratricopept 88.2 0.73 1.6E-05 24.8 2.8 25 159-197 2-26 (26)
346 cd02682 MIT_AAA_Arch MIT: doma 88.1 3.3 7.2E-05 29.0 6.7 56 117-172 4-61 (75)
347 PF07720 TPR_3: Tetratricopept 88.0 2.1 4.5E-05 25.2 4.9 32 207-249 2-35 (36)
348 KOG1839 Uncharacterized protei 87.9 4.7 0.0001 43.1 10.5 143 142-312 956-1116(1236)
349 PF15015 NYD-SP12_N: Spermatog 87.3 11 0.00024 35.5 11.4 61 209-290 231-291 (569)
350 KOG2041 WD40 repeat protein [G 87.3 4.8 0.0001 40.3 9.5 27 158-198 796-822 (1189)
351 PF15015 NYD-SP12_N: Spermatog 87.2 6.2 0.00014 37.1 9.7 83 133-233 185-285 (569)
352 PF11207 DUF2989: Protein of u 87.1 5.5 0.00012 33.7 8.7 72 140-230 122-198 (203)
353 KOG3616 Selective LIM binding 86.5 7 0.00015 39.5 10.2 172 106-285 713-919 (1636)
354 KOG3807 Predicted membrane pro 86.3 27 0.00058 32.0 17.4 104 136-266 196-326 (556)
355 PF07721 TPR_4: Tetratricopept 86.0 0.94 2E-05 24.3 2.5 24 252-285 2-25 (26)
356 cd02680 MIT_calpain7_2 MIT: do 85.8 6.6 0.00014 27.5 7.2 46 188-254 3-48 (75)
357 KOG0985 Vesicle coat protein c 85.8 11 0.00024 39.6 11.4 31 96-127 1101-1131(1666)
358 cd02679 MIT_spastin MIT: domai 85.0 3.2 6.9E-05 29.4 5.4 43 187-248 4-46 (79)
359 PF00244 14-3-3: 14-3-3 protei 84.9 26 0.00056 30.6 12.6 141 161-315 4-189 (236)
360 COG5107 RNA14 Pre-mRNA 3'-end 84.3 24 0.00053 33.7 12.2 75 146-241 290-364 (660)
361 PF10602 RPN7: 26S proteasome 84.1 16 0.00034 30.4 10.2 94 206-320 36-138 (177)
362 KOG0546 HSP90 co-chaperone CPR 84.0 2 4.4E-05 39.3 5.0 113 163-310 227-358 (372)
363 COG2909 MalT ATP-dependent tra 83.8 59 0.0013 33.9 18.4 169 95-310 343-552 (894)
364 smart00386 HAT HAT (Half-A-TPR 83.6 3.2 6.9E-05 22.9 4.3 30 138-167 1-30 (33)
365 PF07079 DUF1347: Protein of u 83.5 44 0.00094 32.1 20.6 107 188-316 396-516 (549)
366 smart00386 HAT HAT (Half-A-TPR 83.3 2.7 5.9E-05 23.2 3.9 29 276-304 2-30 (33)
367 KOG2581 26S proteasome regulat 83.2 42 0.0009 31.7 15.0 123 138-295 140-281 (493)
368 COG3947 Response regulator con 83.1 14 0.0003 33.2 9.6 67 163-247 284-350 (361)
369 COG3947 Response regulator con 82.7 4 8.6E-05 36.5 6.1 64 121-198 276-339 (361)
370 COG3629 DnrI DNA-binding trans 82.6 8.8 0.00019 34.4 8.4 65 205-290 152-216 (280)
371 KOG0128 RNA-binding protein SA 81.8 33 0.00071 35.3 12.7 127 138-290 93-219 (881)
372 COG4649 Uncharacterized protei 81.8 29 0.00062 28.8 11.9 127 112-264 70-213 (221)
373 PF10579 Rapsyn_N: Rapsyn N-te 81.7 16 0.00034 25.8 9.1 41 188-232 22-65 (80)
374 COG5159 RPN6 26S proteasome re 81.5 40 0.00087 30.3 16.9 103 209-316 128-269 (421)
375 PF04190 DUF410: Protein of un 81.2 20 0.00044 31.8 10.3 143 95-266 86-243 (260)
376 smart00299 CLH Clathrin heavy 80.7 22 0.00048 27.9 9.6 105 138-262 21-136 (140)
377 KOG1464 COP9 signalosome, subu 79.9 37 0.00079 30.3 11.0 111 138-267 41-161 (440)
378 KOG1258 mRNA processing protei 79.9 67 0.0014 31.8 18.7 161 117-312 248-417 (577)
379 KOG1464 COP9 signalosome, subu 79.0 25 0.00053 31.3 9.6 58 188-249 43-104 (440)
380 PF04053 Coatomer_WDAD: Coatom 78.7 34 0.00074 33.0 11.7 29 156-198 345-373 (443)
381 KOG0890 Protein kinase of the 78.5 46 0.00099 38.5 13.5 138 137-294 1683-1837(2382)
382 cd02680 MIT_calpain7_2 MIT: do 78.4 4.4 9.5E-05 28.4 4.1 34 115-153 2-35 (75)
383 KOG0546 HSP90 co-chaperone CPR 78.3 2.6 5.6E-05 38.6 3.7 84 158-266 275-358 (372)
384 KOG0890 Protein kinase of the 78.2 76 0.0016 36.9 15.0 122 155-311 1667-1805(2382)
385 COG5536 BET4 Protein prenyltra 78.1 18 0.0004 32.2 8.6 145 140-307 90-239 (328)
386 KOG2422 Uncharacterized conser 78.0 76 0.0016 31.5 16.1 144 138-311 252-430 (665)
387 cd02679 MIT_spastin MIT: domai 77.9 4.1 9E-05 28.8 3.9 35 114-153 3-37 (79)
388 KOG0686 COP9 signalosome, subu 77.9 26 0.00056 33.0 9.9 113 158-301 150-277 (466)
389 cd02683 MIT_1 MIT: domain cont 77.0 20 0.00044 25.2 7.2 43 116-158 3-47 (77)
390 smart00299 CLH Clathrin heavy 75.8 36 0.00078 26.6 10.6 108 188-306 23-136 (140)
391 KOG0739 AAA+-type ATPase [Post 75.5 21 0.00046 32.3 8.4 60 188-266 7-67 (439)
392 KOG0128 RNA-binding protein SA 75.3 84 0.0018 32.5 13.3 105 188-311 95-199 (881)
393 KOG0276 Vesicle coat complex C 75.0 32 0.00069 34.2 10.0 65 117-200 624-694 (794)
394 KOG2561 Adaptor protein NUB1, 74.8 18 0.00039 34.3 8.1 85 150-242 200-299 (568)
395 PF13226 DUF4034: Domain of un 74.3 66 0.0014 28.9 11.8 78 190-267 61-149 (277)
396 KOG4014 Uncharacterized conser 74.3 51 0.0011 27.6 9.8 113 186-309 87-213 (248)
397 COG5107 RNA14 Pre-mRNA 3'-end 74.2 86 0.0019 30.2 13.5 130 146-294 30-194 (660)
398 KOG2114 Vacuolar assembly/sort 73.7 53 0.0012 33.9 11.5 73 100-173 369-446 (933)
399 PF10255 Paf67: RNA polymerase 73.4 13 0.00029 35.2 7.1 65 161-244 125-198 (404)
400 PF04053 Coatomer_WDAD: Coatom 73.3 64 0.0014 31.2 11.9 31 248-288 344-374 (443)
401 cd02681 MIT_calpain7_1 MIT: do 72.8 5.1 0.00011 28.1 3.3 32 117-153 4-35 (76)
402 PF09670 Cas_Cas02710: CRISPR- 72.8 59 0.0013 30.7 11.4 53 135-201 142-198 (379)
403 PRK15180 Vi polysaccharide bio 71.9 19 0.00042 34.6 7.7 99 92-205 316-424 (831)
404 PF12753 Nro1: Nuclear pore co 71.9 20 0.00042 33.7 7.6 60 229-290 330-391 (404)
405 PF10345 Cohesin_load: Cohesin 69.4 1.3E+02 0.0029 30.4 21.8 127 138-297 35-177 (608)
406 PF13226 DUF4034: Domain of un 69.4 86 0.0019 28.2 12.3 77 238-314 64-152 (277)
407 COG4455 ImpE Protein of avirul 69.3 35 0.00075 29.5 7.9 57 135-205 12-68 (273)
408 KOG1538 Uncharacterized conser 68.3 38 0.00082 34.0 9.0 41 247-287 799-843 (1081)
409 COG5536 BET4 Protein prenyltra 67.1 96 0.0021 27.9 11.1 144 141-305 49-194 (328)
410 PF10255 Paf67: RNA polymerase 66.7 10 0.00022 35.9 4.8 65 209-290 125-193 (404)
411 COG1747 Uncharacterized N-term 65.9 1.4E+02 0.0031 29.3 12.7 79 188-290 82-160 (711)
412 PF04212 MIT: MIT (microtubule 65.6 39 0.00086 22.9 6.6 32 116-152 2-33 (69)
413 KOG4279 Serine/threonine prote 65.5 1.3E+02 0.0028 31.0 12.1 186 98-306 200-411 (1226)
414 KOG2041 WD40 repeat protein [G 65.1 92 0.002 31.8 10.9 69 100-173 797-867 (1189)
415 TIGR03504 FimV_Cterm FimV C-te 65.0 12 0.00026 23.1 3.4 26 254-289 2-27 (44)
416 TIGR03504 FimV_Cterm FimV C-te 64.7 14 0.0003 22.9 3.6 26 161-200 2-27 (44)
417 PF10345 Cohesin_load: Cohesin 64.3 1.7E+02 0.0036 29.7 13.6 90 160-267 363-465 (608)
418 cd02684 MIT_2 MIT: domain cont 63.2 12 0.00026 26.2 3.6 32 116-152 3-34 (75)
419 PF00244 14-3-3: 14-3-3 protei 63.0 1E+02 0.0023 26.9 13.7 30 102-132 4-33 (236)
420 PF14863 Alkyl_sulf_dimr: Alky 62.4 42 0.00091 26.7 6.9 52 205-267 69-120 (141)
421 PF14863 Alkyl_sulf_dimr: Alky 61.6 39 0.00085 26.9 6.6 53 250-312 69-121 (141)
422 PF11817 Foie-gras_1: Foie gra 61.3 54 0.0012 28.8 8.3 78 224-312 152-235 (247)
423 PF12854 PPR_1: PPR repeat 60.9 18 0.00039 20.7 3.5 27 250-286 6-32 (34)
424 PHA02537 M terminase endonucle 58.8 19 0.00041 31.3 4.7 37 205-250 168-211 (230)
425 PHA02537 M terminase endonucle 56.8 29 0.00063 30.2 5.5 19 112-130 95-113 (230)
426 KOG4014 Uncharacterized conser 56.6 1.2E+02 0.0026 25.5 13.4 173 95-290 30-233 (248)
427 PF01239 PPTA: Protein prenylt 56.4 33 0.00071 19.0 4.7 29 280-308 2-30 (31)
428 cd02678 MIT_VPS4 MIT: domain c 56.0 66 0.0014 22.3 6.8 41 116-156 3-45 (75)
429 COG4455 ImpE Protein of avirul 55.6 83 0.0018 27.3 7.8 67 223-306 14-83 (273)
430 PF11846 DUF3366: Domain of un 55.5 56 0.0012 27.3 7.1 46 237-293 131-176 (193)
431 PF11846 DUF3366: Domain of un 53.6 67 0.0014 26.9 7.3 51 139-204 126-176 (193)
432 PF10952 DUF2753: Protein of u 53.5 1.1E+02 0.0023 23.9 7.4 71 161-249 4-89 (140)
433 smart00745 MIT Microtubule Int 53.5 72 0.0016 22.0 6.8 33 115-152 4-36 (77)
434 cd02677 MIT_SNX15 MIT: domain 53.5 75 0.0016 22.2 7.4 32 116-152 3-34 (75)
435 PF11817 Foie-gras_1: Foie gra 53.2 85 0.0018 27.6 8.1 75 188-267 154-234 (247)
436 PF04190 DUF410: Protein of un 50.9 1.8E+02 0.0039 25.8 22.0 154 112-290 2-170 (260)
437 PF14852 Fis1_TPR_N: Fis1 N-te 50.5 33 0.00072 20.0 3.4 33 252-291 2-34 (35)
438 PF09797 NatB_MDM20: N-acetylt 50.4 58 0.0013 30.5 7.0 36 138-173 197-232 (365)
439 PF11207 DUF2989: Protein of u 50.3 1.6E+02 0.0035 25.1 15.1 55 249-314 139-197 (203)
440 PF11349 DUF3151: Protein of u 48.3 1.2E+02 0.0026 23.5 6.9 81 148-249 26-124 (129)
441 KOG1463 26S proteasome regulat 47.8 2.4E+02 0.0051 26.3 11.2 134 92-249 161-319 (411)
442 KOG4151 Myosin assembly protei 47.7 80 0.0017 32.3 7.6 55 138-206 107-161 (748)
443 COG4941 Predicted RNA polymera 47.7 1.6E+02 0.0035 27.2 8.8 59 188-257 345-405 (415)
444 KOG4151 Myosin assembly protei 46.6 84 0.0018 32.2 7.6 102 164-298 59-164 (748)
445 PF12753 Nro1: Nuclear pore co 46.5 67 0.0014 30.3 6.4 62 273-343 330-391 (404)
446 KOG4279 Serine/threonine prote 46.3 1.9E+02 0.0041 29.9 9.7 61 112-173 255-335 (1226)
447 PF12739 TRAPPC-Trs85: ER-Golg 46.1 2.7E+02 0.0059 26.6 13.8 92 135-231 219-321 (414)
448 cd02656 MIT MIT: domain contai 45.7 86 0.0019 21.6 5.7 31 117-152 4-34 (75)
449 KOG0889 Histone acetyltransfer 45.0 99 0.0022 37.5 8.6 120 158-306 2812-2931(3550)
450 PF10938 YfdX: YfdX protein; 44.8 1.1E+02 0.0025 24.7 7.0 37 211-251 7-43 (155)
451 PF08238 Sel1: Sel1 repeat; I 44.7 60 0.0013 18.5 4.3 35 158-201 1-37 (39)
452 PF12583 TPPII_N: Tripeptidyl 44.6 54 0.0012 25.7 4.6 36 135-170 87-122 (139)
453 PF01535 PPR: PPR repeat; Int 44.0 40 0.00087 17.9 3.1 28 160-201 2-29 (31)
454 PF13041 PPR_2: PPR repeat fam 42.4 81 0.0018 19.4 5.8 41 250-301 2-44 (50)
455 KOG0276 Vesicle coat complex C 42.3 2.7E+02 0.0058 28.1 9.9 90 188-286 653-746 (794)
456 PF05053 Menin: Menin; InterP 42.0 90 0.002 30.9 6.7 73 278-362 296-373 (618)
457 KOG2063 Vacuolar assembly/sort 41.3 4.7E+02 0.01 27.9 12.9 123 186-308 605-745 (877)
458 smart00671 SEL1 Sel1-like repe 40.9 58 0.0013 18.1 3.6 33 159-201 2-34 (36)
459 COG4941 Predicted RNA polymera 37.4 3.5E+02 0.0075 25.2 18.4 156 136-302 208-406 (415)
460 KOG2581 26S proteasome regulat 36.7 1.8E+02 0.004 27.6 7.6 68 159-251 210-281 (493)
461 PF09205 DUF1955: Domain of un 35.8 2.3E+02 0.0049 22.6 7.8 51 223-290 99-149 (161)
462 PF12739 TRAPPC-Trs85: ER-Golg 35.7 4E+02 0.0087 25.5 15.1 117 160-305 210-351 (414)
463 PF15297 CKAP2_C: Cytoskeleton 34.2 1.2E+02 0.0025 28.2 5.9 45 188-236 119-166 (353)
464 PF05053 Menin: Menin; InterP 32.5 5.1E+02 0.011 25.9 10.1 17 250-266 317-333 (618)
465 PF12309 KBP_C: KIF-1 binding 31.4 4.5E+02 0.0098 24.8 14.3 100 209-308 174-313 (371)
466 PF09548 Spore_III_AB: Stage I 31.3 2.4E+02 0.0053 23.1 7.1 40 227-266 83-122 (170)
467 TIGR00756 PPR pentatricopeptid 31.2 92 0.002 16.7 3.8 27 161-201 3-29 (35)
468 COG5187 RPN7 26S proteasome re 30.9 3.4E+02 0.0074 24.7 8.0 30 251-290 115-144 (412)
469 PF02184 HAT: HAT (Half-A-TPR) 30.3 1.1E+02 0.0024 17.5 3.6 26 233-259 3-28 (32)
470 TIGR02710 CRISPR-associated pr 30.1 4.8E+02 0.01 24.7 11.5 49 135-197 141-196 (380)
471 PF09205 DUF1955: Domain of un 29.1 3E+02 0.0065 22.0 7.2 45 188-236 102-146 (161)
472 KOG0567 HEAT repeat-containing 28.9 4.3E+02 0.0092 23.7 9.6 87 202-312 165-251 (289)
473 KOG0889 Histone acetyltransfer 28.6 1.2E+03 0.026 29.3 13.6 90 206-309 2812-2901(3550)
474 KOG1938 Protein with predicted 28.3 6.7E+02 0.015 26.8 10.7 123 139-293 239-387 (960)
475 KOG2997 F-box protein FBX9 [Ge 28.1 74 0.0016 29.0 3.6 42 116-162 16-57 (366)
476 PF02064 MAS20: MAS20 protein 27.5 1.6E+02 0.0035 22.8 4.9 34 161-208 66-99 (121)
477 KOG3783 Uncharacterized conser 27.0 6.3E+02 0.014 25.0 14.9 105 189-312 250-355 (546)
478 KOG0686 COP9 signalosome, subu 26.9 4.3E+02 0.0094 25.2 8.3 53 207-267 151-203 (466)
479 PRK15326 type III secretion sy 26.9 2.4E+02 0.0051 20.1 7.1 36 225-260 15-50 (80)
480 PF14929 TAF1_subA: TAF RNA Po 26.1 6.7E+02 0.015 25.1 15.2 161 115-310 299-470 (547)
481 KOG4563 Cell cycle-regulated h 25.9 2.1E+02 0.0046 26.8 6.1 55 209-267 44-99 (400)
482 PRK08307 stage III sporulation 25.3 3.6E+02 0.0079 22.1 7.1 43 224-266 81-123 (171)
483 PF15469 Sec5: Exocyst complex 25.2 2.9E+02 0.0063 22.7 6.6 22 223-244 99-120 (182)
484 PRK15490 Vi polysaccharide bio 25.0 5.7E+02 0.012 25.8 9.3 53 158-230 42-94 (578)
485 PF09797 NatB_MDM20: N-acetylt 25.0 5.7E+02 0.012 23.8 11.8 47 185-235 196-242 (365)
486 PRK11619 lytic murein transgly 24.5 7.8E+02 0.017 25.2 13.2 50 223-289 325-374 (644)
487 TIGR00985 3a0801s04tom mitocho 24.3 2.8E+02 0.0062 22.3 5.9 34 162-209 94-128 (148)
488 COG0497 RecN ATPase involved i 23.5 7.6E+02 0.016 24.8 14.4 88 138-240 245-334 (557)
489 PRK15490 Vi polysaccharide bio 23.1 7.1E+02 0.015 25.1 9.6 75 188-285 24-98 (578)
490 COG3014 Uncharacterized protei 22.5 6.4E+02 0.014 23.6 10.0 119 160-297 127-249 (449)
491 TIGR02996 rpt_mate_G_obs repea 22.3 2E+02 0.0043 17.6 3.6 29 239-267 4-32 (42)
492 PF13812 PPR_3: Pentatricopept 22.3 1.4E+02 0.0031 16.0 4.1 27 160-200 3-29 (34)
493 PF08626 TRAPPC9-Trs120: Trans 21.7 1.1E+03 0.025 26.2 15.1 71 231-311 359-461 (1185)
494 PF03097 BRO1: BRO1-like domai 21.5 6.7E+02 0.014 23.4 10.5 114 158-290 107-268 (377)
495 PF07219 HemY_N: HemY protein 20.7 3.6E+02 0.0079 20.0 6.8 46 209-265 62-107 (108)
496 TIGR02833 spore_III_AB stage I 20.5 4.8E+02 0.01 21.4 7.0 40 227-266 83-122 (170)
497 PF06957 COPI_C: Coatomer (COP 20.4 7.4E+02 0.016 23.9 8.8 25 273-297 312-336 (422)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=8.3e-29 Score=229.46 Aligned_cols=200 Identities=23% Similarity=0.297 Sum_probs=181.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|...++|+++|++| ...+.++.|+..|.+++.+.|. .|+.+|+++-||.+|+++|++.|+.++++
T Consensus 245 vkldP~f~dAYiNLGnV~-ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay 323 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVY-KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY 323 (966)
T ss_pred hcCCCcchHHHhhHHHHH-HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence 678999999999999999 6999999999999999999987 36778999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
.+||+++...|+ ..+|..+|.+++.++|+++++.+|||.++.. +|.+++|. ..|.
T Consensus 324 ~NlanALkd~G~--------------V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~-------~ly~ 378 (966)
T KOG4626|consen 324 NNLANALKDKGS--------------VTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEAT-------RLYL 378 (966)
T ss_pred hHHHHHHHhccc--------------hHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 6688
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
++++..|..+.+++|||.+|..+|++ ++|+.+|++||+++|..+.++.|+|.+|..+|+...++..+..+
T Consensus 379 ~al~v~p~~aaa~nNLa~i~kqqgnl----------~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 379 KALEVFPEFAAAHNNLASIYKQQGNL----------DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHhhChhhhhhhhhHHHHHHhcccH----------HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 88888888888888888888888886 88888888888888888888888888888888888888877777
Q ss_pred CCCCcc
Q 017806 322 REVSPN 327 (365)
Q Consensus 322 ~~~~~~ 327 (365)
+..+|.
T Consensus 449 I~~nPt 454 (966)
T KOG4626|consen 449 IQINPT 454 (966)
T ss_pred HhcCcH
Confidence 777765
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=4.4e-28 Score=224.64 Aligned_cols=238 Identities=22% Similarity=0.216 Sum_probs=202.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
++..|+..++|.++|.++ ...|+.+.|.+.|..+++++|.. .-.+|++.+|..+|.++++..|..+.+|
T Consensus 143 iel~p~fida~inla~al-~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 143 IELKPKFIDAYINLAAAL-VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HhcCchhhHHHhhHHHHH-HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 788999999999999999 49999999999999999999861 2335888899999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------ 235 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------ 235 (365)
.+||.++...|+ .-.||.+|++|+.++|+..++|+|||.+|.. .+.++.|+..|.+
T Consensus 222 snLg~~f~~~Ge--------------i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke----~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 222 SNLGCVFNAQGE--------------IWLAIQHYEEAVKLDPNFLDAYINLGNVYKE----ARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred hhcchHHhhcch--------------HHHHHHHHHHhhcCCCcchHHHhhHHHHHHH----HhcchHHHHHHHHHHhcCC
Confidence 999999999898 9999999999999999999999999999988 9999999988765
Q ss_pred ---------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 236 ---------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 236 ---------------------A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
||..|+++++++|+++++++|+|.++...|+. .+|..+|.++|.+.|++
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V----------~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV----------TEAVDCYNKALRLCPNH 353 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch----------HHHHHHHHHHHHhCCcc
Confidence 68999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--hHHHHHHHHHHHHHhcCccHHHHHHHHHhhh
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN--ELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~ 358 (365)
+.+.+|||.++...|..+.+...+..+..+.|+ ..+...+..+.+.+.++.+...|..++++-+
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 999999999999999988888877777777776 2334444444555555555555555555443
No 3
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.2e-22 Score=189.16 Aligned_cols=200 Identities=18% Similarity=0.204 Sum_probs=185.1
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
++.+|..|+.|..+|+++ ..+++++.|+..|++|++++|. -.....++++|..+|+.||..+|++..+|
T Consensus 414 i~~~~~sPesWca~GNcf-SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCF-SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred HhhCCCCcHHHHHhcchh-hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 578999999999999999 6999999999999999999996 23445899999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+.+|.+|.++++ ++.|.-+|++|++++|.+......+|.++.+ .|+.++|+ ..|+
T Consensus 493 YGlG~vy~Kqek--------------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL-------~~~~ 547 (638)
T KOG1126|consen 493 YGLGTVYLKQEK--------------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKAL-------QLYE 547 (638)
T ss_pred Hhhhhheeccch--------------hhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 7799
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
+|+.+||+++-..+..|.++..++++ ++|+..+++.-++-|+...+++.+|.+|..+|+...+...+.-+
T Consensus 548 ~A~~ld~kn~l~~~~~~~il~~~~~~----------~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRASILFSLGRY----------VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHhcCCCCchhHHHHHHHHHhhcch----------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 99999999999999999999999996 99999999999999999999999999999999887666655445
Q ss_pred CCCCcc
Q 017806 322 REVSPN 327 (365)
Q Consensus 322 ~~~~~~ 327 (365)
.+++|.
T Consensus 618 ~~ldpk 623 (638)
T KOG1126|consen 618 LDLDPK 623 (638)
T ss_pred hcCCCc
Confidence 554444
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=5e-21 Score=191.39 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=172.9
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
.|....+++.+|.++. ..|++++|+..|++++.++|. .+...|++++|+.+|+++++++|+++.+++.+
T Consensus 327 ~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 327 GEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred ChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5778889999999995 999999999999999999986 23456899999999999999999999999999
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
|.++...|+ +++|+.+|++++.++|++..++.++|.++.. +|++++|+ ..|++++
T Consensus 406 g~~~~~~g~--------------~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~-------~~~~~al 460 (615)
T TIGR00990 406 AQLHFIKGE--------------FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSM-------ATFRRCK 460 (615)
T ss_pred HHHHHHcCC--------------HHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHH
Confidence 999999999 9999999999999999999999999999999 99999999 7788899
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHH-------------------------------hhhHHHHHHHHHHHHHHhCCC
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPARE-------------------------------KQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~-------------------------------~~~~~~~A~~~~~~al~~~p~ 293 (365)
+.+|+++.+++++|.++..+|+++.|.. ..|++++|+.+|++++.++|+
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999865543 136677777777777777777
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
+..++..+|.++..+|+..++...+..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777665555544333
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.5e-21 Score=183.55 Aligned_cols=196 Identities=18% Similarity=0.161 Sum_probs=178.6
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------------------------------
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------------------------------------------- 132 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------------- 132 (365)
++..-++..+|..|+ .+++|++|...|+.+-...|-
T Consensus 350 ~nt~wvl~q~GrayF-El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~G 428 (638)
T KOG1126|consen 350 YNTGWVLSQLGRAYF-ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALG 428 (638)
T ss_pred CCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhc
Confidence 444567888999996 999999999999999888743
Q ss_pred -hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 133 -GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (365)
Q Consensus 133 -~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 211 (365)
|+.-+++++.|+++|++|+.+||++.-++..+|.-+....+ |+.|..+|++|+.++|.+..+|+.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee--------------~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE--------------FDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH--------------HHhHHHHHHhhhcCCchhhHHHHh
Confidence 56678999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
||.+|.+ +++++.|. .+|++|++++|.+......+|.++.++|+. ++|+..|++|+.++
T Consensus 495 lG~vy~K----qek~e~Ae-------~~fqkA~~INP~nsvi~~~~g~~~~~~k~~----------d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 495 LGTVYLK----QEKLEFAE-------FHFQKAVEINPSNSVILCHIGRIQHQLKRK----------DKALQLYEKAIHLD 553 (638)
T ss_pred hhhheec----cchhhHHH-------HHHHhhhcCCccchhHHhhhhHHHHHhhhh----------hHHHHHHHHHHhcC
Confidence 9999999 99999999 899999999999999999999999999997 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 292 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
|.++-..+..|.+++.++++.++.........+.|.
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 999999999999999999988777655444444444
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=4.1e-20 Score=184.85 Aligned_cols=201 Identities=16% Similarity=0.153 Sum_probs=177.9
Q ss_pred hcHHHHHHHHHHhhccC---hh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC
Q 017806 114 EQNNAAMELINSVTGVD---EE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~---~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
+++++|+..|++++... +. .+...|++++|+.+|+++++++|++..+|..+|.++..+|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~------- 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD------- 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-------
Confidence 57999999999999764 32 34456999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
+++|+.+|+++++++|+++.+|+.+|.++.. .|++++|+ .+|+++++++|++..++.++|.+
T Consensus 381 -------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 381 -------PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAG-------KDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 78999999999999999999999
Q ss_pred HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc-------------
Q 017806 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN------------- 327 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~------------- 327 (365)
+..+|++ ++|+..|++++...|+++.++.++|.++...|+..++...+..++...|.
T Consensus 443 ~~~~g~~----------~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 443 QYKEGSI----------ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHCCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 9999996 99999999999999999999999999999999998887766655554432
Q ss_pred ---------hHHHHHHHHHHHHHhcCccHHH
Q 017806 328 ---------ELYSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 328 ---------~~~~~a~~~~~~a~~~~~~~~~ 349 (365)
..|..+..++.++..++|....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 2345566677777777776654
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=9.5e-21 Score=189.59 Aligned_cols=252 Identities=14% Similarity=0.049 Sum_probs=178.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+...|.++++++.+|.+.+ ..|++++|+..|++++..+|. .+...|++++|+..|+++++++|++..++
T Consensus 69 l~~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~ 147 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIF 147 (656)
T ss_pred HHhCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4556666666666666663 666677777777666666655 23344666666666666666666666666
Q ss_pred HHHHHHHHHhcCcccc---------------------------------C---------------------CCCchhhhH
Q 017806 162 YNWALVLQESADNVSL---------------------------------D---------------------STSPSKDAL 187 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a---------------------------------~---------------------~~~~~~~~~ 187 (365)
..+|.++...|++..| . +......|+
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~ 227 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK 227 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC
Confidence 6666666666654433 0 001123477
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+++|+..|++++.++|+++.+++++|.++.. .|++++|. .+|+..|+++++++|+++.++.++|.++...|++
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~----~G~~~eA~---~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQ----SGRSREAK---LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchhhH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 8888888888888888888888888888888 88888642 2344889999999999999999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch--HHHHHHHHHHHHHhcCc
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE--LYSQSAIYIAAAHALKP 345 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~ 345 (365)
++|+..|++++.++|+++.++.++|.++...|+...+...+..+....|.. .+......+...+..+.
T Consensus 301 ----------~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 301 ----------EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred ----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999998887776666555553 12222333344555555
Q ss_pred cHHHHHHHHHhhhhhh
Q 017806 346 SYSVYSSALRLVRSMV 361 (365)
Q Consensus 346 ~~~~~~~al~~~~~~~ 361 (365)
+...+..++.+.++..
T Consensus 371 A~~~l~~al~~~P~~~ 386 (656)
T PRK15174 371 AESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHhChhhc
Confidence 5555666655554443
No 8
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.5e-19 Score=162.04 Aligned_cols=193 Identities=17% Similarity=0.074 Sum_probs=173.1
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------------------------------------------
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------------------------------------------ 132 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------------ 132 (365)
-|.+.-.-...|.+.. ...++++|+..|+..+..+|-
T Consensus 258 f~~~~~i~~~~A~~~y-~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASY-NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred CCccHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 4566666666677774 889999999999999998853
Q ss_pred -h-hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 133 -G-RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 133 -~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
. +...++.++|+.+|++++++||....+|..+|.-|..+.+ -..||+.|++|++++|.+..+|+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------------t~AAi~sYRrAvdi~p~DyRAWY 402 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------------THAAIESYRRAVDINPRDYRAWY 402 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------------cHHHHHHHHHHHhcCchhHHHHh
Confidence 1 2334899999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.||.+|.- ++-..=|+ -+|++|+++.|++...|..||.||.++++. ++|+++|.+|+..
T Consensus 403 GLGQaYei----m~Mh~YaL-------yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~----------~eAiKCykrai~~ 461 (559)
T KOG1155|consen 403 GLGQAYEI----MKMHFYAL-------YYFQKALELKPNDSRLWVALGECYEKLNRL----------EEAIKCYKRAILL 461 (559)
T ss_pred hhhHHHHH----hcchHHHH-------HHHHHHHhcCCCchHHHHHHHHHHHHhccH----------HHHHHHHHHHHhc
Confidence 99999998 88888888 889999999999999999999999999997 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 291 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
...+..++..||.+|.++++..++...+...++
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 988999999999999999999888766544333
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=3.6e-18 Score=181.64 Aligned_cols=195 Identities=17% Similarity=0.148 Sum_probs=169.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh------------------------hhhhhhHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG------------------------RSRQRILTFAAKRY 147 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~~~~~~~A~~~~ 147 (365)
+..+|+++.+++.+|.++. ..|++++|+.+|++++..+|.. ....|++++|+.+|
T Consensus 296 L~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6788999999999999994 9999999999999999988741 23458999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 148 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 148 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
+++++++|++..++..+|.++...|+ +++|+.+|+++++++|++..++..++.++.. ++++
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~--------------~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-----~~~~ 435 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKD--------------YAAAERYYQQALRMDPGNTNAVRGLANLYRQ-----QSPE 435 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCHH
Confidence 99999999999999999999999999 9999999999999999999999888887642 2334
Q ss_pred HHHHH------------------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH
Q 017806 228 EAEEL------------------------------------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (365)
Q Consensus 228 ~A~~~------------------------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 271 (365)
+|+.. +++|+..|+++++++|+++.+++.+|.+|...|++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~---- 511 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR---- 511 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----
Confidence 33322 23456899999999999999999999999999996
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
++|+..|++++..+|+++.+++.++.++...++..++..
T Consensus 512 ------~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 512 ------SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred ------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999998888777776655543
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=2.6e-18 Score=176.56 Aligned_cols=154 Identities=16% Similarity=0.037 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
|++++|+.+|.++++.+|.+...+..++......|+ +++|+.+|+++++++|+ +.++.++|.++.
T Consensus 556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr--------------~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~ 620 (987)
T PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ--------------PELALNDLTRSLNIAPS-ANAYVARATIYR 620 (987)
T ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 444455555555555444444444444444444444 99999999999999996 889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
. .|++++|+ ..|++++.++|+++.+++++|.++...|++ ++|+..|+++++++|+++.+
T Consensus 621 ~----lG~~deA~-------~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~----------eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 621 Q----RHNVPAAV-------SDLRAALELEPNNSNYQAALGYALWDSGDI----------AQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred H----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHH
Confidence 9 99999999 779999999999999999999999999996 99999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
++++|.++..+|+...+...+..++...|+
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999888777766666666665
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-18 Score=158.89 Aligned_cols=226 Identities=19% Similarity=0.176 Sum_probs=180.5
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
..++-.+|+-++ ..|+|++||.+|.+||.+.|. |+...|++++.++...++|+++|+...+++.++.++
T Consensus 115 A~~lK~~GN~~f-~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 115 AAALKTKGNKFF-RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHHhhhhhhh-hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 456677899896 999999999999999999987 566779999999999999999999999999999999
Q ss_pred HHhcCcccc-----------------------------------------------------------------------
Q 017806 169 QESADNVSL----------------------------------------------------------------------- 177 (365)
Q Consensus 169 ~~~~~~~~a----------------------------------------------------------------------- 177 (365)
..+|+...+
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 999985555
Q ss_pred ----------------------------------------------------------CCCCchhhhHHHHHHHHHHHHH
Q 017806 178 ----------------------------------------------------------DSTSPSKDALLEEACKKYDEAT 199 (365)
Q Consensus 178 ----------------------------------------------------------~~~~~~~~~~~~~A~~~~~~al 199 (365)
+|...+--|++-.|...|+.+|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 2222223377777788888888
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHH
Q 017806 200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT 279 (365)
Q Consensus 200 ~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 279 (365)
.++|.+...|..+|.+|.+ ..+-.+-. +.|.+|..+||.++++|+.+|.+++-++++ ++
T Consensus 354 ~l~~~~~~lyI~~a~~y~d----~~~~~~~~-------~~F~~A~~ldp~n~dvYyHRgQm~flL~q~----------e~ 412 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYAD----ENQSEKMW-------KDFNKAEDLDPENPDVYYHRGQMRFLLQQY----------EE 412 (606)
T ss_pred hcCcccchHHHHHHHHHhh----hhccHHHH-------HHHHHHHhcCCCCCchhHhHHHHHHHHHHH----------HH
Confidence 8888887778888888888 77777777 789999999999999999999999999995 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---------------hHHHHHHHHHHHHHhcC
Q 017806 280 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---------------ELYSQSAIYIAAAHALK 344 (365)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~a~~~~~~a~~~~ 344 (365)
|+..|++++.++|+++.++..++.++++.++......-+..++..=|. ..|..+..+|.++..+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999988766554443333332222 33555555555555555
Q ss_pred cc
Q 017806 345 PS 346 (365)
Q Consensus 345 ~~ 346 (365)
|.
T Consensus 493 ~~ 494 (606)
T KOG0547|consen 493 PR 494 (606)
T ss_pred cc
Confidence 54
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=5.7e-18 Score=169.63 Aligned_cols=196 Identities=10% Similarity=0.020 Sum_probs=161.3
Q ss_pred hhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
..|++++|+..+++++..++. .+...|++++|+..|.++++.+|+++.+++++|.++...|+
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~------- 261 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR------- 261 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------
Confidence 455555555555555554321 23345889999999999999999999999999999999999
Q ss_pred CchhhhHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 017806 181 SPSKDALLEE----ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (365)
Q Consensus 181 ~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~ 256 (365)
+++ |+..|++++.++|+++.++..+|.++.. .|++++|+ ..++++++++|+++.++.+
T Consensus 262 -------~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~-------~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 262 -------SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAI-------PLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred -------chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHH
Confidence 775 8999999999999999999999999999 99999999 7799999999999999999
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---hHHHHH
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---ELYSQS 333 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~a 333 (365)
+|.++...|++ ++|+..|++++..+|+++..+..+|.++...|+...+...+..++...|. ..|..+
T Consensus 324 La~~l~~~G~~----------~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea 393 (656)
T PRK15174 324 YARALRQVGQY----------TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEG 393 (656)
T ss_pred HHHHHHHCCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHH
Confidence 99999999996 99999999999999999888888899999999988887776665555444 334444
Q ss_pred HHHHHHHHh
Q 017806 334 AIYIAAAHA 342 (365)
Q Consensus 334 ~~~~~~a~~ 342 (365)
...+..+..
T Consensus 394 ~~~~~~~~~ 402 (656)
T PRK15174 394 LLALDGQIS 402 (656)
T ss_pred HHHHHHHHH
Confidence 444444443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=3.3e-18 Score=175.76 Aligned_cols=195 Identities=13% Similarity=0.038 Sum_probs=172.2
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh-------hhhh---hhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG-------RSRQ---RILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
|.....++.+|.++ ...|++++|+.+|++++..+|.. .... |++++|+.+|+++++++|+ ..++.++|
T Consensus 539 ~p~~~a~~~la~al-l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA 616 (987)
T PRK09782 539 DMSNEDLLAAANTA-QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARA 616 (987)
T ss_pred CCCcHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 44456678889888 49999999999999999998651 1223 9999999999999999996 99999999
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
.++..+|+ +++|+.+|++++.++|+++.+++++|.++.. .|++++|+ ..|+++++
T Consensus 617 ~~l~~lG~--------------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi-------~~l~~AL~ 671 (987)
T PRK09782 617 TIYRQRHN--------------VPAAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSR-------EMLERAHK 671 (987)
T ss_pred HHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHH
Confidence 99999999 9999999999999999999999999999999 99999999 77999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCC
Q 017806 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS 325 (365)
Q Consensus 246 ~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~ 325 (365)
++|+++.+++++|.++..+|++ ++|+.+|++++.++|+++.+....|.+.....+...+.........++
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~----------~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDM----------AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999996 999999999999999999999999999988887666555443333333
Q ss_pred cc
Q 017806 326 PN 327 (365)
Q Consensus 326 ~~ 327 (365)
+.
T Consensus 742 ~~ 743 (987)
T PRK09782 742 FD 743 (987)
T ss_pred cc
Confidence 33
No 14
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.4e-18 Score=157.44 Aligned_cols=216 Identities=17% Similarity=0.107 Sum_probs=189.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
.+..|..+..|+..|..|+ ..|++++|..+|.++..+++. .+..+++.++|+.+|..|-++.|+...-.
T Consensus 305 V~~yP~~a~sW~aVg~YYl-~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYL-MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred HHhCCCCCcchhhHHHHHH-HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence 5778999999999999995 999999999999999999976 34556999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.-|..+++ +.-|..+|.+|+.+.|.++-.+..+|.+.+. .+.|.+|+..|+.++....
T Consensus 384 LYlgmey~~t~n--------------~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 384 LYLGMEYMRTNN--------------LKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHHHHHHhcc--------------HHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhh
Confidence 999999999999 9999999999999999999999999999999 9999999977666664444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
......+.....++|||.++.+++.+ ++|+.+|+++|.+.|.++.++..+|.+|..+|+.
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~----------~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl---------- 505 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKY----------EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL---------- 505 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhH----------HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh----------
Confidence 44444444567899999999999996 9999999999999999999999999999999966
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 322 REVSPNELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
..|..+|.+++.++|++.....-|+
T Consensus 506 ---------d~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 506 ---------DKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred ---------HHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4566777888888888766655554
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.4e-18 Score=153.85 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=168.4
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
..++..+|..++ ..|+...|...|..+|.+++. .+..+++-++-...|.++..+||.++++|+.+|.++
T Consensus 326 A~al~~~gtF~f-L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 326 AEALLLRGTFHF-LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHhhhhhh-hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 678999999996 999999999999999999976 244457888999999999999999999999999999
Q ss_pred HHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
+-+++ |++|+..|+++++++|++.-++..++.+.++ ++++++++ +.|+.+.+..|
T Consensus 405 flL~q--------------~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m-------~~Fee~kkkFP 459 (606)
T KOG0547|consen 405 FLLQQ--------------YEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESM-------KTFEEAKKKFP 459 (606)
T ss_pred HHHHH--------------HHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHhCC
Confidence 99999 9999999999999999999999999999999 99999999 88999999999
Q ss_pred CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhh-hhhhhhcCcCCC
Q 017806 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD------FHRAIYNLGTVLYGLA-EDTLRTGGTVNP 321 (365)
Q Consensus 249 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g-~~~~a~~~~~~~ 321 (365)
+.+++++..|.++..++++ ++|++.|.+|+++.|. ++..+.+.|.+..+.. +...+......+
T Consensus 460 ~~~Evy~~fAeiLtDqqqF----------d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 460 NCPEVYNLFAEILTDQQQF----------DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA 529 (606)
T ss_pred CCchHHHHHHHHHhhHHhH----------HHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH
Confidence 9999999999999999996 9999999999999999 7777777776665533 333344444445
Q ss_pred CCCCcc
Q 017806 322 REVSPN 327 (365)
Q Consensus 322 ~~~~~~ 327 (365)
++++|.
T Consensus 530 ~e~Dpk 535 (606)
T KOG0547|consen 530 IELDPK 535 (606)
T ss_pred HccCch
Confidence 555554
No 16
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=1.6e-17 Score=163.74 Aligned_cols=191 Identities=14% Similarity=0.042 Sum_probs=163.8
Q ss_pred HHhcCCChhH--hhhcHHHHHHHHHHhhccChhh----------hh---------hhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 102 SFSQGNTPHQ--LAEQNNAAMELINSVTGVDEEG----------RS---------RQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 102 ~~~~g~~~~~--~~g~~~~A~~~~~~al~~~~~~----------~~---------~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
++.+|...+. ..+.+++|+.+|++++.++|.. +. ..+++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 5666753311 2356889999999999999871 11 1245899999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+..+|.++...|+ +++|+.+|+++++++|+++.+++.+|.++.. .|++++|+ ..+
T Consensus 341 ~~~lg~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi-------~~~ 395 (553)
T PRK12370 341 LGLLGLINTIHSE--------------YIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEAL-------QTI 395 (553)
T ss_pred HHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHH
Confidence 9999999999999 9999999999999999999999999999999 99999999 889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-FDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
+++++++|.++.+++.++.++...|++ ++|+..+++++... |+++.++.++|.++..+|+.+++.....
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~----------eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGI----------DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCH----------HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999988887788788888886 99999999999885 8889999999999999999888877654
Q ss_pred CCCCCCcc
Q 017806 320 NPREVSPN 327 (365)
Q Consensus 320 ~~~~~~~~ 327 (365)
......+.
T Consensus 466 ~~~~~~~~ 473 (553)
T PRK12370 466 EISTQEIT 473 (553)
T ss_pred Hhhhccch
Confidence 44443443
No 17
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-17 Score=150.97 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=162.3
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
-.++.-...|+.| ...+++++|+.+|++++.++|. -+...++...|+..|++|++++|.+..+|+.||+
T Consensus 328 yR~ETCCiIaNYY-Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 328 YRPETCCIIANYY-SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ 406 (559)
T ss_pred CCccceeeehhHH-HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence 3455566778888 6999999999999999999987 2556689999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
+|..++. ..-|+-+|++|+.+.|++...|..||.+|.+ +++.++|+ ++|.+++..
T Consensus 407 aYeim~M--------------h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAi-------KCykrai~~ 461 (559)
T KOG1155|consen 407 AYEIMKM--------------HFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAI-------KCYKRAILL 461 (559)
T ss_pred HHHHhcc--------------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHH-------HHHHHHHhc
Confidence 9999999 9999999999999999999999999999999 99999999 889999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ-------LQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
...+..++..+|.+|.++++. .+|..+|++.++ .+|.-..+...|+.-+.+.+++.+
T Consensus 462 ~dte~~~l~~LakLye~l~d~----------~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDL----------NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred cccchHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 888899999999999999996 999999999998 345556677778888888775543
No 18
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=3.5e-17 Score=161.31 Aligned_cols=184 Identities=14% Similarity=-0.015 Sum_probs=166.4
Q ss_pred hccCCCchHHHHhcCCChhHhh---------hcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLA---------EQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~---------g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~ 152 (365)
+..+|+++.++..+|.++. .. +++++|+..+++++.++|. .+...|++++|+.+|+++++
T Consensus 288 l~ldP~~a~a~~~La~~~~-~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 288 VNMSPNSIAPYCALAECYL-SMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HhcCCccHHHHHHHHHHHH-HHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7889999999999887763 33 3489999999999999987 24456999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
++|+++.+++.+|.++...|+ +++|+.+|+++++++|.++.+++.++.++.. .|++++|+
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~--------------~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~-- 426 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQ--------------LEEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAI-- 426 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHH--
Confidence 999999999999999999999 9999999999999999999888888888888 99999999
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
..+++++..+ |+++.++.++|.+|..+|++ ++|+..+.+.+...|.+..++..++.++...|+.
T Consensus 427 -----~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~----------~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (553)
T PRK12370 427 -----RLGDELRSQHLQDNPILLSMQVMFLSLKGKH----------ELARKLTKEISTQEITGLIAVNLLYAEYCQNSER 491 (553)
T ss_pred -----HHHHHHHHhccccCHHHHHHHHHHHHhCCCH----------HHHHHHHHHhhhccchhHHHHHHHHHHHhccHHH
Confidence 7789988775 88999999999999999996 9999999999999999999999999999988853
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=1.5e-17 Score=157.52 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=151.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHhCCCC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIERNPED 157 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~~p~~ 157 (365)
+..+|+++.+++.+|.++. ..|++++|+..+++++..... .+...|++++|+..|.++++.+|.+
T Consensus 62 l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~ 140 (389)
T PRK11788 62 LKVDPETVELHLALGNLFR-RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA 140 (389)
T ss_pred HhcCcccHHHHHHHHHHHH-HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence 5678899999999999994 999999999999998875421 3445699999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
..++..++.++...|+ +++|+..|++++...|.+. ..+..+|.++.. .|++++|+
T Consensus 141 ~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-- 200 (389)
T PRK11788 141 EGALQQLLEIYQQEKD--------------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAAR-- 200 (389)
T ss_pred HHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHH--
Confidence 9999999999999999 8888888888887776542 245677777777 88888888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~ 311 (365)
..|+++++.+|++..+++.+|.++...|++ ++|+..|++++..+|.+ ..++..++.++...|+.
T Consensus 201 -----~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 201 -----ALLKKALAADPQCVRASILLGDLALAQGDY----------AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred -----HHHHHHHhHCcCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 667777777777777888888888888875 77777777777776655 34566677777777766
Q ss_pred hhhhcCcCCCCC
Q 017806 312 TLRTGGTVNPRE 323 (365)
Q Consensus 312 ~~a~~~~~~~~~ 323 (365)
..+......+..
T Consensus 266 ~~A~~~l~~~~~ 277 (389)
T PRK11788 266 AEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHHH
Confidence 666554443333
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=1.8e-17 Score=176.35 Aligned_cols=207 Identities=12% Similarity=0.053 Sum_probs=176.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh--------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG-------------------------------------- 133 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------- 133 (365)
+..+|.++.+++.+|.++ ...|++++|+.+|++++..+|..
T Consensus 378 l~~~P~~~~a~~~Lg~~~-~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVA-MARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 677899999999999999 49999999999999999888651
Q ss_pred --------------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHH
Q 017806 134 --------------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 199 (365)
Q Consensus 134 --------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al 199 (365)
+...|++++|+.+|+++++++|+++.+++.+|.++...|+ +++|+..|++++
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~--------------~~~A~~~l~~al 522 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ--------------RSQADALMRRLA 522 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHH
Confidence 0124899999999999999999999999999999999999 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------H-------------------------HHHHHHhc
Q 017806 200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT--------K-------------------------NYEKAVQL 246 (365)
Q Consensus 200 ~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~--------~-------------------------~~~~al~~ 246 (365)
+++|+++..++.+|..+.. .|++++|+..+++.. . .....++.
T Consensus 523 ~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999998888 899999887655310 0 01123456
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
+|.++.++..+|.++...|++ ++|+.+|+++++.+|+++.++.+++.++...|+..++...+.......|
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~----------~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDY----------AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 788889999999999999996 9999999999999999999999999999999988888776665555444
Q ss_pred c
Q 017806 327 N 327 (365)
Q Consensus 327 ~ 327 (365)
.
T Consensus 669 ~ 669 (1157)
T PRK11447 669 D 669 (1157)
T ss_pred C
Confidence 3
No 21
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.78 E-value=1e-17 Score=135.59 Aligned_cols=129 Identities=15% Similarity=0.097 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 222 (365)
-..+|+++++++|++ ++.+|.++...|+ +++|+.+|++++.++|.+..+|+++|.++..
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---- 70 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGD--------------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMM---- 70 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----
Confidence 356789999999985 6789999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.|++++|+ ..|++++.++|+++.+++++|.++..+|++ ++|+..|++++.+.|+++..+.++|
T Consensus 71 ~g~~~~A~-------~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~----------~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 71 LKEYTTAI-------NFYGHALMLDASHPEPVYQTGVCLKMMGEP----------GLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HhhHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999999 889999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHhh
Q 017806 303 TVLYGLA 309 (365)
Q Consensus 303 ~~~~~~g 309 (365)
.+...++
T Consensus 134 ~~~~~l~ 140 (144)
T PRK15359 134 NAQIMVD 140 (144)
T ss_pred HHHHHHH
Confidence 9887665
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=1.1e-16 Score=139.43 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=154.5
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..+.+++.+|.++. ..|++++|+..+++++..+|. .+...|++++|+..|+++++.+|.+..++.++|.
T Consensus 29 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYL-EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34677888999994 899999999999999888765 2445689999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
++...|+ +++|+..|++++... +.....+.++|.++.. .|++++|+ ..|.+++
T Consensus 108 ~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~~~ 162 (234)
T TIGR02521 108 FLCQQGK--------------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAE-------KYLTRAL 162 (234)
T ss_pred HHHHccc--------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHH-------HHHHHHH
Confidence 9999998 999999999998754 4567788889999988 99999998 7788888
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
..+|+++.++..+|.++...|++ ++|+..+++++...|.++..+..++.++...|+...
T Consensus 163 ~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 163 QIDPQRPESLLELAELYYLRGQY----------KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HhCcCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 88899889999999999999986 999999999999888888888888888888876553
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=6.3e-17 Score=168.00 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=147.9
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
...|.++.+++.+|.++ ...|++++|+..|++++...|. .+...|++++|+..|+++++.+|++..++.
T Consensus 595 ~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQ-LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred HcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 44566666777777777 3777777777777777666554 233446777777777777777777777777
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------- 235 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------- 235 (365)
.++.++...|+ +++|+..++++.+..|.++..+..+|.++.. .|++++|+..|++
T Consensus 674 ~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 674 GLAQLLLAAKR--------------TESAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCC
Confidence 77777766666 5555555555544444455555555555555 5555555544332
Q ss_pred -------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 236 -------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 236 -------------------A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
|+..++++++.+|++..+++.+|.++...|++ ++|+..|+++++.+|+++.
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY----------DKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHhCCCCHH
Confidence 23556667777777777777777777777775 8899999999988898888
Q ss_pred HHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---------------hHHHHHHHHHHHHHhcCccHHHH
Q 017806 297 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---------------ELYSQSAIYIAAAHALKPSYSVY 350 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~a~~~~~~a~~~~~~~~~~ 350 (365)
++.++|.++...|+ .++......+....|+ ..+..+..+|.++....|.+...
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Confidence 88889988888887 5555554444443332 12455666666666666654433
No 24
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=3.9e-18 Score=158.39 Aligned_cols=163 Identities=22% Similarity=0.282 Sum_probs=137.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+++.|++.+|+-+|+.++..+|.+.++|..||.+....++ -..||..++++++++|+|..++..||
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~--------------E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN--------------EQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc--------------hHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4556888888888888888888888888888888888887 78888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHH-------------------------------------------------------------
Q 017806 214 IAISDRAKMRGRTKEAEEL------------------------------------------------------------- 232 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~------------------------------------------------------------- 232 (365)
..|.. .|.-.+|+.+
T Consensus 361 VSytN----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 361 VSYTN----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHHhh----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 88877 6666666555
Q ss_pred ---------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 233 ---------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 233 ---------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
|++|+.+|+.||..+|++...|+.||-++..-.+. ++||..|++|+++.|++.++++|||+
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 44578999999999999999999999999998886 99999999999999999999999999
Q ss_pred HHHHhhhhhhhhcCcCCCCCC
Q 017806 304 VLYGLAEDTLRTGGTVNPREV 324 (365)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~ 324 (365)
++..+|.+.++...+..++.+
T Consensus 507 S~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHh
Confidence 999999887777765554443
No 25
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.76 E-value=1.3e-16 Score=132.92 Aligned_cols=147 Identities=24% Similarity=0.314 Sum_probs=135.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
+++..|++..|...++++|+.+|.+..+|..++.+|...|+ .+.|.+.|++|++++|++.++++|.
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------------~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------------NDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------hhhHHHHHHHHHhcCCCccchhhhh
Confidence 46778999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
|..+.. +|++++|. ..|++|+. +|. ...+|-|+|.|-.+.|++ +.|..+|+++++
T Consensus 110 G~FLC~----qg~~~eA~-------q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~----------~~A~~~l~raL~ 167 (250)
T COG3063 110 GAFLCA----QGRPEEAM-------QQFERALA-DPAYGEPSDTLENLGLCALKAGQF----------DQAEEYLKRALE 167 (250)
T ss_pred hHHHHh----CCChHHHH-------HHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCc----------hhHHHHHHHHHH
Confidence 999999 99999999 77888876 444 578999999999999997 999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 290 LQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 290 ~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
++|+++.+...++..++..|+...+.
T Consensus 168 ~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 168 LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999999988765443
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.75 E-value=1.9e-16 Score=144.02 Aligned_cols=204 Identities=12% Similarity=0.060 Sum_probs=148.3
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..+..++.+|.++ ...|++++|+..|++++.++|. .+...|++++|+..|+++++++|++..+|.++|.
T Consensus 62 ~~a~~~~~~g~~~-~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 62 ERAQLHYERGVLY-DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred hhHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4477899999999 5999999999999999999887 2445699999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++...|+ +++|+..|+++++++|+++..... ..+... .+++++|+ ..|.+++..
T Consensus 141 ~l~~~g~--------------~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~----~~~~~~A~-------~~l~~~~~~ 194 (296)
T PRK11189 141 ALYYGGR--------------YELAQDDLLAFYQDDPNDPYRALW-LYLAES----KLDPKQAK-------ENLKQRYEK 194 (296)
T ss_pred HHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHc----cCCHHHHH-------HHHHHHHhh
Confidence 9999999 999999999999999998742111 123334 67888888 556655544
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
.+. ..|. .+.++..+|+... ...++.+...++.+++++|+..++|+++|.++..+|+..
T Consensus 195 ~~~--~~~~-~~~~~~~lg~~~~----~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~-------------- 253 (296)
T PRK11189 195 LDK--EQWG-WNIVEFYLGKISE----ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD-------------- 253 (296)
T ss_pred CCc--cccH-HHHHHHHccCCCH----HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH--------------
Confidence 322 2232 4666677777511 012233344445555777888899999999999999765
Q ss_pred chHHHHHHHHHHHHHhcCc-cHHHHHHH
Q 017806 327 NELYSQSAIYIAAAHALKP-SYSVYSSA 353 (365)
Q Consensus 327 ~~~~~~a~~~~~~a~~~~~-~~~~~~~a 353 (365)
.+..+|.++..++| ++..+..+
T Consensus 254 -----~A~~~~~~Al~~~~~~~~e~~~~ 276 (296)
T PRK11189 254 -----EAAALFKLALANNVYNFVEHRYA 276 (296)
T ss_pred -----HHHHHHHHHHHhCCchHHHHHHH
Confidence 45555666666664 44444433
No 27
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.75 E-value=4.3e-17 Score=148.14 Aligned_cols=182 Identities=15% Similarity=0.086 Sum_probs=144.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|+++.+++.+|.++ ...|++++|+..|++++.++|. .++..|++++|+..|+++++++|+++...
T Consensus 91 l~l~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~ 169 (296)
T PRK11189 91 LALRPDMADAYNYLGIYL-TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA 169 (296)
T ss_pred HHcCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 678999999999999999 5999999999999999999986 34556999999999999999999997422
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
.++ .+....++ +++|+..|.+++...+.. .|. .+.+... +|++.++ ..++.+.+.++
T Consensus 170 ~~~-~l~~~~~~--------------~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~----lg~~~~~-~~~~~~~~~~~ 226 (296)
T PRK11189 170 LWL-YLAESKLD--------------PKQAKENLKQRYEKLDKE--QWG-WNIVEFY----LGKISEE-TLMERLKAGAT 226 (296)
T ss_pred HHH-HHHHccCC--------------HHHHHHHHHHHHhhCCcc--ccH-HHHHHHH----ccCCCHH-HHHHHHHhcCC
Confidence 222 23445567 999999998877654322 232 4666667 8887665 35566666677
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF-DFHRAIYNLGTVLYG 307 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 307 (365)
..++++|+.+++|+++|.++..+|++ ++|+.+|++|+..+| ++.+..+.+..+...
T Consensus 227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~----------~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 227 DNTELAERLCETYFYLAKYYLSLGDL----------DEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 77888899999999999999999996 999999999999997 555655555444443
No 28
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.75 E-value=2.1e-16 Score=164.04 Aligned_cols=199 Identities=17% Similarity=0.121 Sum_probs=123.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
....|.++..+..+|.++. ..|++++|+..|++++..+|. .+...|++++|+..|++++..+|.+..++
T Consensus 458 ~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 3456677778888888884 888888888888888877765 23345778888888888888888888888
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..++.++...|+ +++|+..|++++..+|.+...+..++.++.. .|++++|+ ..++
T Consensus 537 ~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~ 591 (899)
T TIGR02917 537 LALAGLYLRTGN--------------EEEAVAWLEKAAELNPQEIEPALALAQYYLG----KGQLKKAL-------AILN 591 (899)
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHH-------HHHH
Confidence 888888887777 6666666666666666666666666666666 66666666 3344
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------------------hhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------KQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
+++..+|.++.+|..+|.++...|+++.|.. ..|++++|+..|++++..+|++..+
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 671 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 4444445555555555555555555300000 0011255555555555555555555
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 017806 298 IYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~~ 316 (365)
+..++.++...|+...+..
T Consensus 672 ~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 5555555555555444433
No 29
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.2e-16 Score=144.68 Aligned_cols=241 Identities=19% Similarity=0.132 Sum_probs=200.2
Q ss_pred HhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 103 FSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 103 ~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
...|+..+ ..|+++.|+.+|..+|.++|. ++...|+|++|++.-.+.++++|+.+..|..+|..+.-+|
T Consensus 6 k~kgnaa~-s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 6 KEKGNAAF-SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHhhc-ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34577775 999999999999999999987 4666799999999999999999999999999999999999
Q ss_pred CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC---------------------------
Q 017806 173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR--------------------------- 225 (365)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~--------------------------- 225 (365)
+ |++|+..|.++|+.+|+|..+..+|..++.........
T Consensus 85 ~--------------~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 85 D--------------YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred c--------------HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHH
Confidence 9 99999999999999999999999998887432100000
Q ss_pred --------------------HHHHH-------------------------------------------------------
Q 017806 226 --------------------TKEAE------------------------------------------------------- 230 (365)
Q Consensus 226 --------------------~~~A~------------------------------------------------------- 230 (365)
...++
T Consensus 151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 00000
Q ss_pred -------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH-------------------------------
Q 017806 231 -------ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------------- 272 (365)
Q Consensus 231 -------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------------- 272 (365)
..|..|+++|.+++.++ .+...+++.+.+|...|.+.....
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 00444889999999999 888888888888888877632211
Q ss_pred ------------------------------------------------------------hhhHHHHHHHHHHHHHHhCC
Q 017806 273 ------------------------------------------------------------KQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 273 ------------------------------------------------------------~~~~~~~A~~~~~~al~~~p 292 (365)
+.|+|..|+..|.+||..+|
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 67999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---------------hHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---------------ELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
+++..|.|.+.||.++|....++.+...+++++|+ ..|..+...|..+.+.+|++..+...++.+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 99999999999999999999999988888888887 237888888899999999988887777665
Q ss_pred hh
Q 017806 358 RS 359 (365)
Q Consensus 358 ~~ 359 (365)
-.
T Consensus 470 ~~ 471 (539)
T KOG0548|consen 470 VE 471 (539)
T ss_pred HH
Confidence 43
No 30
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.6e-16 Score=147.84 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=159.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhh------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQ------------------------ 137 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~------------------------ 137 (365)
+..+|.+.++|..+|.+. ...++-..||..+++++.++|. ++..+
T Consensus 312 VkqdP~haeAW~~LG~~q-aENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQ-AENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HhhChHHHHHHHHhhhHh-hhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 788999999999999999 5999999999999999999976 11111
Q ss_pred -----------------hhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 138 -----------------RILTFAAKRYANAIERNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 138 -----------------~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
..+..-.+.|-.+...+| .+++++..||.+|...|+ |++|+.||+.|
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e--------------fdraiDcf~~A 456 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE--------------FDRAVDCFEAA 456 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH--------------HHHHHHHHHHH
Confidence 223344555666666777 789999999999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 199 l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
|...|++...|+.||..+.. ..+..+|+ ..|++|+++.|++..+++|||.+++.+|.+ +
T Consensus 457 L~v~Pnd~~lWNRLGAtLAN----~~~s~EAI-------sAY~rALqLqP~yVR~RyNlgIS~mNlG~y----------k 515 (579)
T KOG1125|consen 457 LQVKPNDYLLWNRLGATLAN----GNRSEEAI-------SAYNRALQLQPGYVRVRYNLGISCMNLGAY----------K 515 (579)
T ss_pred HhcCCchHHHHHHhhHHhcC----CcccHHHH-------HHHHHHHhcCCCeeeeehhhhhhhhhhhhH----------H
Confidence 99999999999999999999 99999999 889999999999999999999999999995 9
Q ss_pred HHHHHHHHHHHhCCC-----C-----HHHHHHHHHHHHHhhhhh
Q 017806 279 TAISKFRAAIQLQFD-----F-----HRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 279 ~A~~~~~~al~~~p~-----~-----~~~~~~lg~~~~~~g~~~ 312 (365)
+|+++|-.||.+.+. . -.+|..|-.++...++.+
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999998654 1 257888877777777655
No 31
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=6e-16 Score=140.84 Aligned_cols=171 Identities=10% Similarity=0.038 Sum_probs=144.5
Q ss_pred HhhhcHHHHHHHHHHhhccChhh----------hhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCC
Q 017806 111 QLAEQNNAAMELINSVTGVDEEG----------RSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179 (365)
Q Consensus 111 ~~~g~~~~A~~~~~~al~~~~~~----------~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~ 179 (365)
...++.++|+..+.++|.++|.. ....| ++++++..+.+++..+|.+..+|++++.++..+|+
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~------ 121 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP------ 121 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc------
Confidence 36677788888888888888772 22234 68999999999999999999999999999998886
Q ss_pred CCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
..+++++.+++++++++|+|..+|..+|.++.. .|++++++ ..+.++|+.||++..+|+++|.
T Consensus 122 ------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL-------~~~~~~I~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 122 ------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDEL-------EYCHQLLEEDVRNNSAWNQRYF 184 (320)
T ss_pred ------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHH-------HHHHHHHHHCCCchhHHHHHHH
Confidence 013788999999999999999999999999999 99998888 8899999999999999999999
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
++.++++... .....++++.+..++|.++|+|..+|+.++.++..
T Consensus 185 vl~~~~~l~~---~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 185 VITRSPLLGG---LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHhcccccc---ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 9988733100 00113578999999999999999999999999987
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=9.7e-17 Score=145.08 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=112.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhC--CCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERN--PEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 160 (365)
+..++.++..+..++.++ ..+++++|+.++.++...++. .+...++++++...++++.... +.++..
T Consensus 71 ~~~~~~~~~~~~~l~~l~--~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 148 (280)
T PF13429_consen 71 LASDKANPQDYERLIQLL--QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARF 148 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHH
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHH
Confidence 344445555555555552 667777777777666555443 2345588888888888877655 678888
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|..+|.++...|+ .++|+.+|+++++++|++..++..++.++.. .|+++++. ..+
T Consensus 149 ~~~~a~~~~~~G~--------------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~-------~~l 203 (280)
T PF13429_consen 149 WLALAEIYEQLGD--------------PDKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEAR-------EAL 203 (280)
T ss_dssp HHHHHHHHHHCCH--------------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHH-------HHH
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHH-------HHH
Confidence 9999999999998 9999999999999999999999999999988 89998877 456
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
....+..|+++..|..+|.++..+|+. ++|+.+|++++..+|+|+..+.++|.++...|+..++...+
T Consensus 204 ~~~~~~~~~~~~~~~~la~~~~~lg~~----------~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 204 KRLLKAAPDDPDLWDALAAAYLQLGRY----------EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHH-HTSCCHCHHHHHHHHHHT-H----------HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred HHHHHHCcCHHHHHHHHHHHhcccccc----------ccccccccccccccccccccccccccccccccccccccccc
Confidence 665666678888899999999999996 99999999999999999999999999999999888776654
No 33
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=1.4e-15 Score=138.32 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=142.8
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CccccCCCCchhhhHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~a~~~~~~~~~~~~~ 190 (365)
..+++.+|+.+|+.++... +.+++|+..+.++|.++|.+..+|+.+|.++..++ . +++
T Consensus 32 y~~~~~~a~~~~ra~l~~~-------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~--------------l~e 90 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASD-------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDAD--------------LEE 90 (320)
T ss_pred eCHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchh--------------HHH
Confidence 6688999999999887643 45789999999999999999999999999999998 5 899
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT--KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~--~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
++.+++++++.+|++..+|+.++.++.. .|+. ++++ ..+.++++.+|++..+|.++|.++..+|++
T Consensus 91 eL~~~~~~i~~npknyqaW~~R~~~l~~----l~~~~~~~el-------~~~~kal~~dpkNy~AW~~R~w~l~~l~~~- 158 (320)
T PLN02789 91 ELDFAEDVAEDNPKNYQIWHHRRWLAEK----LGPDAANKEL-------EFTRKILSLDAKNYHAWSHRQWVLRTLGGW- 158 (320)
T ss_pred HHHHHHHHHHHCCcchHHhHHHHHHHHH----cCchhhHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHhhhH-
Confidence 9999999999999999999999999988 8874 4444 779999999999999999999999999995
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++|++++.++|+.+|+|..+|+.+|.++..++
T Consensus 159 ---------~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 159 ---------EDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred ---------HHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 99999999999999999999999999988764
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=1.6e-15 Score=131.91 Aligned_cols=155 Identities=22% Similarity=0.280 Sum_probs=139.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...|++++|+..++++++.+|++..++..+|.++...|+ +++|+..|++++++.|.+..+++++
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE--------------LEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45667899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
|.++.. .|++++|+ ..|++++.. .+.....+.++|.++...|++ ++|+..|.+++..
T Consensus 106 ~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~ 164 (234)
T TIGR02521 106 GTFLCQ----QGKYEQAM-------QQFEQAIEDPLYPQPARSLENAGLCALKAGDF----------DKAEKYLTRALQI 164 (234)
T ss_pred HHHHHH----cccHHHHH-------HHHHHHHhccccccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence 999999 99999999 556666553 356678999999999999996 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 291 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
+|++..++..+|.++...|+...+...+..+.
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999998877665544433
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=6.7e-16 Score=146.12 Aligned_cols=195 Identities=15% Similarity=0.063 Sum_probs=166.5
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCC----HHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPED----YDALY 162 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~ 162 (365)
......+.+|..+. ..|++++|+..|.+++..+|. .+...|++++|+..+++++...+.. ..++.
T Consensus 33 ~~~~~~y~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 33 NRLSRDYFKGLNFL-LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hhccHHHHHHHHHH-hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 44556677788884 899999999999999999886 2455699999999999999864332 35789
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.++...|+ +++|+..|+++++.+|.+..++..++.++.. .|++++|+ ..+++
T Consensus 112 ~La~~~~~~g~--------------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~ 166 (389)
T PRK11788 112 ELGQDYLKAGL--------------LDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAI-------DVAER 166 (389)
T ss_pred HHHHHHHHCCC--------------HHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHH-------HHHHH
Confidence 99999999999 9999999999999999999999999999999 99999999 66777
Q ss_pred HHhcCCCCH-----HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 243 AVQLNWNSP-----QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 243 al~~~p~~~-----~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+++.+|.+. ..+..+|.++...|++ ++|+..|+++++.+|++..++..+|.++...|+..++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDL----------DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777653 3567899999999996 9999999999999999999999999999999999888776
Q ss_pred cCCCCCCCcc
Q 017806 318 TVNPREVSPN 327 (365)
Q Consensus 318 ~~~~~~~~~~ 327 (365)
+..+....|.
T Consensus 237 ~~~~~~~~p~ 246 (389)
T PRK11788 237 LERVEEQDPE 246 (389)
T ss_pred HHHHHHHChh
Confidence 6655554443
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.70 E-value=2.3e-15 Score=128.25 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=128.5
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 191 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A 191 (365)
..|++.....+.++...- ...+...++.++++..++++++.+|++...|..+|.++...|+ +++|
T Consensus 28 ~~g~~~~v~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------------~~~A 92 (198)
T PRK10370 28 LSPKWQAVRAEYQRLADP-LHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------------YDNA 92 (198)
T ss_pred HcchHHHHHHHHHHHhCc-cccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHH
Confidence 677777765555333221 1122235778999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAI-SDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~~~g~--~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
+.+|++++.++|+++.++.++|.++ .. .|+ +++|. ..++++++.+|+++.+++++|.++...|++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~----~g~~~~~~A~-------~~l~~al~~dP~~~~al~~LA~~~~~~g~~- 160 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQ----AGQHMTPQTR-------EMIDKALALDANEVTALMLLASDAFMQADY- 160 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCCCcHHHH-------HHHHHHHHhCCCChhHHHHHHHHHHHcCCH-
Confidence 9999999999999999999999985 56 787 48888 889999999999999999999999999996
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
++|+.+|+++++++|.+..-
T Consensus 161 ---------~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 161 ---------AQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred ---------HHHHHHHHHHHhhCCCCccH
Confidence 99999999999998876543
No 37
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=8e-16 Score=124.45 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=108.3
Q ss_pred HHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHH
Q 017806 121 ELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193 (365)
Q Consensus 121 ~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~ 193 (365)
.+|++++.++|. .....|++++|+.+|.+++.++|.+..+|+++|.++...|+ +++|+.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------------~~~A~~ 79 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--------------YTTAIN 79 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------------HHHHHH
Confidence 445555555554 23456889999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 194 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+|++++.++|+++.+++++|.++.. .|++++|+ ..|+++++++|+++..|.++|.+...++
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~----~g~~~eAi-------~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKM----MGEPGLAR-------EAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999 8899999999999999999999987764
No 38
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.67 E-value=1e-14 Score=121.68 Aligned_cols=176 Identities=16% Similarity=0.095 Sum_probs=156.1
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 169 (365)
.+...+|.-|+ ..|++..|...+++++..+|+. +...|+.+.|.+.|++++.++|++.++++|.|..+.
T Consensus 36 ~arlqLal~YL-~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYL-QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56777888885 9999999999999999999982 445699999999999999999999999999999999
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
.+|+ +++|...|++|+.. .+..++.|-|+|.|..+ .|+++.|. +.|+++++++
T Consensus 115 ~qg~--------------~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~-------~~l~raL~~d 169 (250)
T COG3063 115 AQGR--------------PEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAE-------EYLKRALELD 169 (250)
T ss_pred hCCC--------------hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHH-------HHHHHHHHhC
Confidence 9999 99999999999974 35578899999999999 99999999 8899999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
|+++.+...++..++..|++ -.|..++++....-+-.++.+.....+-..+|+.
T Consensus 170 p~~~~~~l~~a~~~~~~~~y----------~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 170 PQFPPALLELARLHYKAGDY----------APARLYLERYQQRGGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred cCCChHHHHHHHHHHhcccc----------hHHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence 99999999999999999996 9999999998888777777666555555566644
No 39
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=4.8e-16 Score=135.37 Aligned_cols=195 Identities=14% Similarity=0.075 Sum_probs=146.2
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..++.+..+..+| .+..+...|+..|.+.+...|. .+...+++++|.++|+.+++.+|.+.++...+|.
T Consensus 254 ~~~dTfllLskvY-~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~ 332 (478)
T KOG1129|consen 254 PHPDTFLLLSKVY-QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV 332 (478)
T ss_pred CchhHHHHHHHHH-HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence 4567777777788 5888888888888888877765 1233477888888888888888888888777777
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
-|+-.++ .+-|+.+|++.+++.-.+++.+.|+|.++.. .++++-++ ..|++|+..
T Consensus 333 ~yfY~~~--------------PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L-------~sf~RAlst 387 (478)
T KOG1129|consen 333 GYFYDNN--------------PEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVL-------PSFQRALST 387 (478)
T ss_pred ccccCCC--------------hHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhH-------HHHHHHHhh
Confidence 7777777 8888888888888888888888888888887 78888888 455555544
Q ss_pred C--C-CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 247 N--W-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 247 ~--p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
. | .-+++|+|+|.+....|++ .-|.++|+-++..++++.++++|||..-.+.|+...+......+.+
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~----------nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDF----------NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred ccCcchhhhhhhccceeEEeccch----------HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 3 2 2467888888888888876 8888888888888888888888888888888877777666655555
Q ss_pred CCcc
Q 017806 324 VSPN 327 (365)
Q Consensus 324 ~~~~ 327 (365)
+.|.
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 5554
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.63 E-value=1.4e-13 Score=120.91 Aligned_cols=210 Identities=12% Similarity=0.062 Sum_probs=151.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------~~~~~~~~~~A~~~ 146 (365)
++..|+...+...+|.+++ .+|+++.|...|...+..+|. .++..|++..|+.+
T Consensus 99 lelKpDF~~ARiQRg~vll-K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLL-KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HhcCccHHHHHHHhchhhh-hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 4566777777777777775 778888888888888777763 23444888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
....|++.|.++..+..++.||...|+ ...||..++.+-++..++.+.++..+.+++. .|+.
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e--------------~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~----vgd~ 239 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGE--------------PKKAIHDLKQASKLSQDNTEGHYKISQLLYT----VGDA 239 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHhccccchHHHHHHHHHHHh----hhhH
Confidence 888888889989889999999999998 9999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------HHHhcCcchhHH----------------------
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA------------LQELSAIVPARE---------------------- 272 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~------------~~~~~~~~~~~~---------------------- 272 (365)
+.++ ...+.++++||++-..+-.+-.+ ..+.+++.....
T Consensus 240 ~~sL-------~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 240 ENSL-------KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred HHHH-------HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 8888 55566666666554333221111 111111110000
Q ss_pred ------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 273 ------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 273 ------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
..|.+.+||+.+.++|+++|++..++...+.+|......+.++.++..+.+.+++
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 3355699999999999999999999999999998776665555554444444443
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.4e-14 Score=134.48 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=163.5
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
...+|....+|...|..+ ...|..++|+..|..|-++.+.+ +.+.+++.-|..+|.+|+.+.|.++-++
T Consensus 339 t~lD~~fgpaWl~fghsf-a~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~ 417 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSF-AGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVL 417 (611)
T ss_pred hhcCccccHHHHHHhHHh-hhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhh
Confidence 467889999999999999 59999999999999999998773 4567999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
+.+|.+.+..+. |.+|+.+|+.++..-+. =...++|||.++.+ ++++++|+
T Consensus 418 ~Elgvvay~~~~--------------y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----l~~~~eAI---- 475 (611)
T KOG1173|consen 418 HELGVVAYTYEE--------------YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----LNKYEEAI---- 475 (611)
T ss_pred hhhhheeehHhh--------------hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH----HhhHHHHH----
Confidence 999999999999 99999999999954222 23569999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
..|+++|.+.|+++.++..+|.+|..+|++ +.|+..|.++|.++|++..+-..|+.+...
T Consensus 476 ---~~~q~aL~l~~k~~~~~asig~iy~llgnl----------d~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 ---DYYQKALLLSPKDASTHASIGYIYHLLGNL----------DKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred ---HHHHHHHHcCCCchhHHHHHHHHHHHhcCh----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 889999999999999999999999999997 999999999999999998888888876654
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.4e-13 Score=134.80 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=153.1
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+...|++.-++++.+.+.+ ..|+|..|+.+|.+++...|. |+...++.+.|+..|.++++++|.++.+
T Consensus 157 l~~sp~Nil~LlGkA~i~y-nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAY-NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred HhhCCcchHHHHHHHHHHh-ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 6788999999999999996 999999999999999999876 5666788999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH--------
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL-------- 232 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~-------- 232 (365)
+..||.+-....+. ..+..+...+.++..+++.||.+.+.|+.-++. .|+|..+..+
T Consensus 236 lv~L~~~~l~~~d~-----------~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDS-----------DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHHHHHccch-----------HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhh
Confidence 99888887765541 237777777777777777777777777766666 6666666544
Q ss_pred ----------------------HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 233 ----------------------WKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 233 ----------------------~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
|++|-++|..+++.++++ .-.++.+|..|.+.|++ +.|+.+|++++.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl----------e~s~~~fEkv~k 370 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL----------EESKFCFEKVLK 370 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH----------HHHHHHHHHHHH
Confidence 233447777777777776 66777777777777775 899999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q 017806 290 LQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 290 ~~p~~~~~~~~lg~~~~~~g 309 (365)
..|++.+...-||.+|...+
T Consensus 371 ~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 371 QLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred hCcchHHHHHHHHhHHHhhh
Confidence 99999998888888888775
No 43
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.1e-13 Score=121.34 Aligned_cols=219 Identities=16% Similarity=0.105 Sum_probs=176.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------------------------- 132 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------- 132 (365)
...-|.|++.+..+|.+++ ..|++++|+..|+++..++|.
T Consensus 225 ~~~lr~NvhLl~~lak~~~-~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLY-YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred hccCCccHHHHHHHhhhhh-hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 5677899999999999996 999999999999999999965
Q ss_pred -----hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 133 -----GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD 207 (365)
Q Consensus 133 -----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 207 (365)
..+..+++..|+.+-+++|..+|++..++..-|.++..+++ .++|+-+|+.|+.+.|...+
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------------~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER--------------HTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------------hHHHHHHHHHHHhcchhhHH
Confidence 13455889999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-----------------------------HHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELW-----------------------------KQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~-----------------------------~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
+|-.|-.+|.. .|++.+|..+- ++|-+.++++++++|.+..+.+.++
T Consensus 370 ~Y~GL~hsYLA----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 370 IYRGLFHSYLA----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHHHh----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH
Confidence 99999999999 99999998541 2355666666666666666666666
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHH
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA 338 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 338 (365)
.++...|.. +.+++++++.+...|+ ...+..||.++...+ -+..+..+|.
T Consensus 446 EL~~~Eg~~----------~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~N-------------------e~Q~am~~y~ 495 (564)
T KOG1174|consen 446 ELCQVEGPT----------KDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQN-------------------EPQKAMEYYY 495 (564)
T ss_pred HHHHhhCcc----------chHHHHHHHHHhhccc-cHHHHHHHHHHHHhh-------------------hHHHHHHHHH
Confidence 666666664 6666666666666554 344555666555544 2466788889
Q ss_pred HHHhcCccHHHHHHHHHhhhh
Q 017806 339 AAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 339 ~a~~~~~~~~~~~~al~~~~~ 359 (365)
.|..++|.+....+.+..++.
T Consensus 496 ~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHhcCccchHHHHHHHHHHh
Confidence 999999999888888876653
No 44
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.60 E-value=4.9e-14 Score=112.87 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=113.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
..|++++..+|++..+.+.+|.++...|+ +++|+..|++++.++|.++.+|.++|.++.. .|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~ 65 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR--------------YDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LK 65 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HH
Confidence 46889999999999999999999999999 9999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
++++|+ ..|++++..+|+++..++++|.++...|++ ++|+..|+++++++|++.....
T Consensus 66 ~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 66 EYEEAI-------DAYALAAALDPDDPRPYFHAAECLLALGEP----------ESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHHH-------HHHHHHHhcCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhccccchHHH
Confidence 999999 779999999999999999999999999996 9999999999999999876543
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=2.3e-13 Score=139.21 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=108.8
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYN 163 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (365)
.+|....++..+|.++ ...|++++|+.+|++++..+|. .+...|++++|+..++++++.+|++.. +..
T Consensus 44 ~~~~~a~~~~~lA~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~ 121 (765)
T PRK10049 44 HMQLPARGYAAVAVAY-RNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLA 121 (765)
T ss_pred hCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHH
Confidence 4777888899999999 5999999999999999999876 345569999999999999999999999 999
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
+|.++...|+ +++|+..|++++++.|++..++..+|.++.. .|..++|++.+
T Consensus 122 la~~l~~~g~--------------~~~Al~~l~~al~~~P~~~~~~~~la~~l~~----~~~~e~Al~~l 173 (765)
T PRK10049 122 LAYVYKRAGR--------------HWDELRAMTQALPRAPQTQQYPTEYVQALRN----NRLSAPALGAI 173 (765)
T ss_pred HHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHH
Confidence 9999999999 9999999999999999999999999999988 88887766443
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=6.5e-15 Score=128.38 Aligned_cols=222 Identities=17% Similarity=0.117 Sum_probs=186.0
Q ss_pred HHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 102 SFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 102 ~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
-..+|.||+ ++|-+.+|...++.++...+. .+.+.++...|+..|.+.++..|.+...+..++.++..++
T Consensus 226 k~Q~gkCyl-rLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYL-RLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHH-HhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 467899995 999999999999999998865 3555588999999999999999999999999999999999
Q ss_pred CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
+ +++|.+.|+.+++.+|.|.++.-..|.-|+. -++.+-|+ .+|++.++..-.+++
T Consensus 305 ~--------------~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~Al-------ryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 305 Q--------------QEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMAL-------RYYRRILQMGAQSPE 359 (478)
T ss_pred h--------------HHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHH-------HHHHHHHHhcCCChH
Confidence 9 9999999999999999999999999999999 99999999 889999999999999
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF--D-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN-- 327 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~-- 327 (365)
.++|+|.|.+.-+++ +-++..|++|+.... + -+.+|+|||.+....|+...+...++.+..-++.
T Consensus 360 Lf~NigLCC~yaqQ~----------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQI----------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHhhHHHHHHhhcch----------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 999999999999996 999999999998754 2 3689999999999999998888777666655544
Q ss_pred hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 328 ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 328 ~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
+.+......-.+-+.++.+.+.+..|--..+.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 33444444444444454444444444433333
No 47
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-14 Score=130.05 Aligned_cols=208 Identities=14% Similarity=0.132 Sum_probs=177.3
Q ss_pred hHHHHHHHhh--hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------
Q 017806 82 TMRELLTELK--SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------------- 132 (365)
Q Consensus 82 ~~~~~l~~l~--~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------- 132 (365)
++.+.+..+. ++..|+++..|.+++.+++ ..|++++|....++.+.+++.
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m-~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLM-MLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHH-HHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 4555555544 7888999999999999995 999999999999988888743
Q ss_pred -----------------------------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcccc
Q 017806 133 -----------------------------------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL 177 (365)
Q Consensus 133 -----------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a 177 (365)
|+...+++++|++.--..+++++.+.++++.+|.+++..++
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~---- 218 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN---- 218 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc----
Confidence 22334777888888888888999999999999999999998
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 178 DSTSPSKDALLEEACKKYDEATRLCPTLH------------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 178 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
.+.|+.+|++++.++|++. ..|...|.-.++ .|++..|. ++|..+|.
T Consensus 219 ----------~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~-------E~Yteal~ 277 (486)
T KOG0550|consen 219 ----------ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAY-------ECYTEALN 277 (486)
T ss_pred ----------hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHH-------HHHHHhhc
Confidence 9999999999999999854 357778888888 99999999 88999999
Q ss_pred cCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 246 LNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 246 ~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
++|++ +..|.|+|.+..++|+. .+|+..+..|+.++|....++...|.|+..++++..+..++..+
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl----------~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRL----------REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCc----------hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 56799999999999998 99999999999999999999999999999999998888776655
Q ss_pred CCCC
Q 017806 322 REVS 325 (365)
Q Consensus 322 ~~~~ 325 (365)
....
T Consensus 348 ~q~~ 351 (486)
T KOG0550|consen 348 MQLE 351 (486)
T ss_pred Hhhc
Confidence 5443
No 48
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.9e-14 Score=128.69 Aligned_cols=172 Identities=22% Similarity=0.159 Sum_probs=158.0
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccC--hhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccC
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
++..+|..+ ...++++.|+.+|.+++.-. |+........++++.......-++|.-..-...-|+.++..|+
T Consensus 300 ~~~r~g~a~-~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd----- 373 (539)
T KOG0548|consen 300 ALARLGNAY-TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD----- 373 (539)
T ss_pred HHHHhhhhh-hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC-----
Confidence 345578888 48899999999999998765 4466667889999999999999999988888999999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
|..|+.+|.++|..+|+++.+|.|+|.+|.. +|.+..|+ +...++++++|++..+|.+.|
T Consensus 374 ---------y~~Av~~YteAIkr~P~Da~lYsNRAac~~k----L~~~~~aL-------~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 374 ---------YPEAVKHYTEAIKRDPEDARLYSNRAACYLK----LGEYPEAL-------KDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred ---------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHhcCchHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 789999999999999999999
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
.++..+.++ +.|++.|+++++.+|++.++...+..|+..+
T Consensus 434 ~al~~mk~y----------dkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 434 AALRAMKEY----------DKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999995 9999999999999999999999999999864
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=7.3e-14 Score=122.91 Aligned_cols=171 Identities=16% Similarity=0.050 Sum_probs=140.6
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCHH-
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDYD- 159 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~- 159 (365)
.++..+..++.+|..++ ..|+++.|+..|++++...|. ++...|++++|+..|+++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEAL-DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred cccCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34567788999999995 999999999999999998764 345569999999999999999998776
Q ss_pred --HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHH
Q 017806 160 --ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YNWAIAISDRA 220 (365)
Q Consensus 160 --~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~ 220 (365)
+++.+|.++..... ......|++++|+..|++++..+|++..++ ..+|.++..
T Consensus 107 ~~a~~~~g~~~~~~~~------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~-- 178 (235)
T TIGR03302 107 DYAYYLRGLSNYNQID------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK-- 178 (235)
T ss_pred HHHHHHHHHHHHHhcc------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 79999999988611 122233459999999999999999986543 356777778
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
.|++.+|+ ..|++++...|+ .+.+++++|.++..+|++ ++|+.+++......|
T Consensus 179 --~g~~~~A~-------~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~----------~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 179 --RGAYVAAI-------NRFETVVENYPDTPATEEALARLVEAYLKLGLK----------DLAQDAAAVLGANYP 234 (235)
T ss_pred --cCChHHHH-------HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCC
Confidence 89999999 678888887665 468999999999999996 999998888766554
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.7e-15 Score=136.96 Aligned_cols=225 Identities=16% Similarity=0.103 Sum_probs=106.8
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
.|+++..|..+|.+. ...++++.|+..|++.+..++. .+...+++++|+.++.++.+.++ ++..+....
T Consensus 40 ~~~~~~~~~~~a~La-~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l 117 (280)
T PF13429_consen 40 PPDDPEYWRLLADLA-WSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDG-DPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccchhhHHH
Confidence 578889999999999 5999999999999999998865 23456999999999999988764 567777888
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
.++...++ ++++...++++.... +.++..|..+|.++.. .|++++|+ ..|+++
T Consensus 118 ~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~-------~~~~~a 172 (280)
T PF13429_consen 118 QLYYRLGD--------------YDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKAL-------RDYRKA 172 (280)
T ss_dssp H-HHHTT---------------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHHH-------HHHHHH
T ss_pred HHHHHHhH--------------HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHH
Confidence 88999999 999999999988765 6789999999999999 99999999 889999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 244 l~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
++.+|++..++..++.++...|+. +++...+.......|+++..+..+|.++..+|+..++...+..+..
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999999999999999999986 8888888888888888899999999999999988766555544444
Q ss_pred CCcch--HHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 324 VSPNE--LYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 324 ~~~~~--~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
.+|.+ .....+..+...+..+.+...+.++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 34432 2233344444444444444444444443
No 51
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=123.65 Aligned_cols=118 Identities=31% Similarity=0.315 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
-+..-|+-+...++ |.+|+..|.+||+++|.++-.|.+++.+|.+ +|.++.|+ +.
T Consensus 83 ~LK~eGN~~m~~~~--------------Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AV-------kD 137 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKD--------------YQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAV-------KD 137 (304)
T ss_pred HHHHHHHHHHHhhh--------------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHH-------HH
Confidence 35556666666677 9999999999999999999999999999999 99999999 88
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
++.+|.+||.+..+|..||.+|..+|++ ++|++.|++||+++|++...+.+|.++-.++++..
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~gk~----------~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLALGKY----------EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHccCcH----------HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999996 99999999999999999999999999999888655
No 52
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2e-14 Score=124.61 Aligned_cols=112 Identities=23% Similarity=0.285 Sum_probs=106.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
++..+..++|.+|+..|.+||+++|.++..|-+++.+|.++|. |+.|++.++.+|.+||....+|.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------------~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------------YEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------------hHHHHHHHHHHHhcChHHHHHHH
Confidence 3345677999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.||.+|.. +|++++|+ ..|+++|+++|++..++.+|..+-..+++.
T Consensus 154 RLG~A~~~----~gk~~~A~-------~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 154 RLGLAYLA----LGKYEEAI-------EAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHc----cCcHHHHH-------HHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999 99999999 779999999999999999999999999986
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=8.8e-14 Score=136.28 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=153.1
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---hhhhh-------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---GRSRQ-------RILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
....|+++.++ +..++++.|...|..++...|. ++.+. +++.+|...++.++..+..++.+|..+|.++
T Consensus 496 lt~~YNlarl~-E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLL-EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 34578999999 7999999999999999999987 33332 6788999999999999999999999999888
Q ss_pred HHhcCcccc----------------------CC------------CCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 169 QESADNVSL----------------------DS------------TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 169 ~~~~~~~~a----------------------~~------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
.....+..+ .| ..-...+.+++|++.|.++|..+|.|.-+-+.+|.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI 654 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh
Confidence 876665444 01 11113478999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--C
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--F 292 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p 292 (365)
++.. .|++.+|. ..|.++.+.--++.++|.|+|.||..+|++ ..|++.|+.++... .
T Consensus 655 VLA~----kg~~~~A~-------dIFsqVrEa~~~~~dv~lNlah~~~e~~qy----------~~AIqmYe~~lkkf~~~ 713 (1018)
T KOG2002|consen 655 VLAE----KGRFSEAR-------DIFSQVREATSDFEDVWLNLAHCYVEQGQY----------RLAIQMYENCLKKFYKK 713 (1018)
T ss_pred hhhh----ccCchHHH-------HHHHHHHHHHhhCCceeeeHHHHHHHHHHH----------HHHHHHHHHHHHHhccc
Confidence 9999 99999999 556666665556788888888888888886 55555555555432 2
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
++..++..||.+++..|+..++......+....|.
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 34555555555555555555444444444444333
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.57 E-value=1.2e-13 Score=137.48 Aligned_cols=137 Identities=11% Similarity=-0.003 Sum_probs=101.0
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 152 ~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
...|.+++++++||.+....|+ +++|...++.++++.|++..++.+++.++.+ .+++++|+
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~--------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~~~~eeA~- 140 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHR--------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----QQGIEAGR- 140 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hccHHHHH-
Confidence 3456777777777777777777 7777777777777777777777777777777 77777777
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
..+++++..+|+++.+++.+|.++.++|++ ++|+.+|++++..+|+++.++.++|.++...|+.
T Consensus 141 ------~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~----------~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 141 ------AEIELYFSGGSSSAREILLEAKSWDEIGQS----------EQADACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred ------HHHHHHhhcCCCCHHHHHHHHHHHHHhcch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 667777777777777777777777777775 7777777777777777777777777777777777
Q ss_pred hhhhcCcCCCCC
Q 017806 312 TLRTGGTVNPRE 323 (365)
Q Consensus 312 ~~a~~~~~~~~~ 323 (365)
..+...+..+++
T Consensus 205 ~~A~~~~~~a~~ 216 (694)
T PRK15179 205 WRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHHH
Confidence 666555544443
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=8.5e-13 Score=119.78 Aligned_cols=187 Identities=12% Similarity=0.007 Sum_probs=145.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+.-++.++.+.|++.+ ..|++++|.+.|+.++..+..| ...+|++++|+++|-+.-.+--++..++
T Consensus 483 ln~dryn~~a~~nkgn~~f-~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAF-ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred hcccccCHHHhhcCCceee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 5667778899999999996 9999999999999999998774 3456999999999999888888899999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+.++.+|..+.+ ..+||++|-++..+-|+++.++..||.+|-+ .|+-.+|.++ +-
T Consensus 562 ~qianiye~led--------------~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~-------~y 616 (840)
T KOG2003|consen 562 VQIANIYELLED--------------PAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQC-------HY 616 (840)
T ss_pred HHHHHHHHHhhC--------------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhh-------hh
Confidence 999999999999 9999999999999999999999999999999 9999999844 44
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
......|.+.++.-.||..|....-. ++|+.+|++|--+.|+...-...++.|+.+.|+..++
T Consensus 617 dsyryfp~nie~iewl~ayyidtqf~----------ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 617 DSYRYFPCNIETIEWLAAYYIDTQFS----------EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hcccccCcchHHHHHHHHHHHhhHHH----------HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 44445555555555555555554443 5555555555555555544444455555555544443
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=1.8e-13 Score=120.47 Aligned_cols=147 Identities=22% Similarity=0.165 Sum_probs=125.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH---
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--- 207 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 207 (365)
++..|++++|+..|++++..+|.++ .+++.+|.++...|+ +++|+..|+++++..|+++.
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------------YAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCchHH
Confidence 4567899999999999999999876 688999999999999 99999999999999998765
Q ss_pred HHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMR--------GRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQ 262 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~--------g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~ 262 (365)
+++.+|.++.. . |++++|+ +.|++++..+|++..++ ..+|.++.
T Consensus 109 a~~~~g~~~~~----~~~~~~~~~~~~~~A~-------~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 177 (235)
T TIGR03302 109 AYYLRGLSNYN----QIDRVDRDQTAAREAF-------EAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYL 177 (235)
T ss_pred HHHHHHHHHHH----hcccccCCHHHHHHHH-------HHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999987 5 5566666 88999999999986543 35567777
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhhhhhhh
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~a~ 315 (365)
..|++ .+|+..|++++...|+. +.+++++|.++..+|+..++.
T Consensus 178 ~~g~~----------~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 178 KRGAY----------VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HcCCh----------HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 77775 99999999999997764 689999999999999775443
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.56 E-value=4.5e-13 Score=137.09 Aligned_cols=186 Identities=11% Similarity=-0.041 Sum_probs=161.5
Q ss_pred hhhcHHHHHHHHHHhhccC---hh--------hhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCccc
Q 017806 112 LAEQNNAAMELINSVTGVD---EE--------GRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVS 176 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~---~~--------~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~ 176 (365)
..|++++|+..|++++... |. .+...|++++|+.+|++++..+|.+ ...+..++.++...|+
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~--- 325 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN--- 325 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc---
Confidence 6799999999999999875 32 3566799999999999999998876 4567888888999999
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 177 LDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 177 a~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+++|+..++++....|. ...++..+|.++.. .|++++|+ ..++
T Consensus 326 -----------~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~-------~~l~ 383 (765)
T PRK10049 326 -----------YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAE-------MRAR 383 (765)
T ss_pred -----------HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 99999999999998773 24577899999999 99999999 7799
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
+++...|++..+++.+|.++...|++ ++|++.+++++.++|++..+++.+|.++..+|+.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~----------~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~---------- 443 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWP----------RAAENELKKAEVLEPRNINLEVEQAWTALDLQEW---------- 443 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH----------
Confidence 99999999999999999999999996 9999999999999999999999999999999865
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCccHHHHH
Q 017806 322 REVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
..+...+..+....|++....
T Consensus 444 ---------~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 444 ---------RQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred ---------HHHHHHHHHHHHhCCCCHHHH
Confidence 455556677777777766544
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.56 E-value=8.2e-14 Score=132.56 Aligned_cols=193 Identities=15% Similarity=0.134 Sum_probs=163.1
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhcc--------Chh----------hhhhhhhHHHHHHHHHHHHHh-
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGV--------DEE----------GRSRQRILTFAAKRYANAIER- 153 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~--------~~~----------~~~~~~~~~~A~~~~~~al~~- 153 (365)
...|.-..+...++..| ...|+++.|+.+|++++.. .+. .+..++++.+|+..|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y-~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMY-AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred cCCchHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45677777888899999 5999999999999999998 222 355569999999999999985
Q ss_pred -------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Q 017806 154 -------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISD 218 (365)
Q Consensus 154 -------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~ 218 (365)
+|..+.++.+||.+|...|+ |++|..++++|++|. |.-+..+.+++.++..
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GK--------------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGK--------------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCC--------------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 35567789999999999999 999999999999873 3345678999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC------
Q 017806 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ------ 291 (365)
Q Consensus 219 ~~~~~g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------ 291 (365)
++++++|+.+++++++.+.+++..+- .-+.++.+||.+|..+|++ ++|...|++||.+.
T Consensus 338 ----~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~----------~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 338 ----MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY----------KEAEELYKKAIQILRELLGK 403 (508)
T ss_pred ----hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999998887664 7789999999999999996 99999999999874
Q ss_pred --CCCHHHHHHHHHHHHHhhhhhhh
Q 017806 292 --FDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 292 --p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
+.....+++||..+..++...++
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchH
Confidence 33356788888888877765544
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.53 E-value=4.3e-13 Score=133.45 Aligned_cols=149 Identities=10% Similarity=0.035 Sum_probs=133.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
....|.++++++++|.+. ...|.+++|...++.++++.|++..++.+++.++.++
T Consensus 79 ~~~~~~~~~~~~~La~i~-------------------------~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~ 133 (694)
T PRK15179 79 VRRYPHTELFQVLVARAL-------------------------EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ 133 (694)
T ss_pred HHhccccHHHHHHHHHHH-------------------------HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Confidence 345677788888887777 3446678888888999999999999999999999999
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
++ +++|...+++++..+|+++.+++.+|.++.. +|++++|+ ..|++++..+|+++
T Consensus 134 ~~--------------~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~----~g~~~~A~-------~~y~~~~~~~p~~~ 188 (694)
T PRK15179 134 QG--------------IEAGRAEIELYFSGGSSSAREILLEAKSWDE----IGQSEQAD-------ACFERLSRQHPEFE 188 (694)
T ss_pred cc--------------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hcchHHHH-------HHHHHHHhcCCCcH
Confidence 99 9999999999999999999999999999999 99999999 77999999999999
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
.+|.++|.++...|+. ++|...|++|+....+-...+.+
T Consensus 189 ~~~~~~a~~l~~~G~~----------~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 189 NGYVGWAQSLTRRGAL----------WRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhCcchHHHHH
Confidence 9999999999999997 99999999999997766665444
No 60
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.53 E-value=6.4e-13 Score=113.24 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL-QELSA 266 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~ 266 (365)
.++++..++++++.+|++...|..||.++.. .|++++|+ ..|+++++++|+++.++.++|.++ ...|+
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~-------~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNAL-------LAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999 99999999 889999999999999999999985 66676
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
. ++++|+..++++++++|++..+++++|.+++..|+..++..
T Consensus 124 ~--------~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 124 H--------MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred C--------CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 1 12899999999999999999999999999999997654333
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=2.1e-12 Score=122.94 Aligned_cols=229 Identities=12% Similarity=-0.017 Sum_probs=140.6
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
..|+++.|.+.+.++....|. ....+|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~------- 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE------- 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC-------
Confidence 445555555555555544433 11222555555555555555555443 233334555555555
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA------------------------ 236 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A------------------------ 236 (365)
++.|...+++.++..|+++.++..++.++.. .|++++|++.+.+.
T Consensus 169 -------~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 169 -------LHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555 55555444432220
Q ss_pred -------HHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCcchhHH--------------------------hhhHHHH
Q 017806 237 -------TKNYEKAVQLNW----NSPQALNNWGLALQELSAIVPARE--------------------------KQTIVRT 279 (365)
Q Consensus 237 -------~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~~~~--------------------------~~~~~~~ 279 (365)
+..+.++....| +++..+..+|..+...|+++.|.. ..++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 123444444455 467777777777777777765554 2255688
Q ss_pred HHHHHHHHHHhCCCCH--HHHHHHHHHHHHhhhhhhhhcCcC--CCCCCCcch-HHHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 280 AISKFRAAIQLQFDFH--RAIYNLGTVLYGLAEDTLRTGGTV--NPREVSPNE-LYSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 280 A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~a~~~~~--~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
+++.++++++.+|+++ ..+..+|++++..|++.++...+. .+....|.. .+......+.+.+..+.+...|.+++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999 889999999999999998888777 454455543 45677777777777777778888877
Q ss_pred Hhhh
Q 017806 355 RLVR 358 (365)
Q Consensus 355 ~~~~ 358 (365)
..+-
T Consensus 398 ~~~~ 401 (409)
T TIGR00540 398 GLML 401 (409)
T ss_pred HHHh
Confidence 6553
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=1.9e-12 Score=126.22 Aligned_cols=200 Identities=15% Similarity=0.160 Sum_probs=156.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.++.+|+.+|.+| ++.|+.+++....-.|..++|.. ...+|++.+|+-||.+||+.+|.+....
T Consensus 166 Ikqdp~~~~ay~tL~~Iy-EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~ 244 (895)
T KOG2076|consen 166 IKQDPRNPIAYYTLGEIY-EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI 244 (895)
T ss_pred HHhCccchhhHHHHHHHH-HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH
Confidence 688999999999999999 79999999999999999999873 1234889999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHhcCCHHHHHHHH---
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFYNWAIAISDRAKMRGRTKEAEELW--- 233 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~g~~~~A~~~~--- 233 (365)
+..+.+|.++|+ +..|...|.+++.++|.. .+.....+..+.. .++-+.|++.+
T Consensus 245 ~ers~L~~~~G~--------------~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~----~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 245 YERSSLYQKTGD--------------LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT----HNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHHhCh--------------HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHH
Confidence 999999999999 999999999999999821 1111122222222 22223333221
Q ss_pred --------------------------------------------------------------------------------
Q 017806 234 -------------------------------------------------------------------------------- 233 (365)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (365)
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence
Q ss_pred --------------------------------------------HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcc
Q 017806 234 --------------------------------------------KQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 234 --------------------------------------------~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~ 268 (365)
..|+..|...+...+ ++..+|+.+|.||..+|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~- 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY- 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH-
Confidence 114555555444433 2467888888888888885
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
++|+.+|+++|.++|++..+...|+.++..+|+.+++......
T Consensus 466 ---------e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 466 ---------EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred ---------HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999988765544
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.8e-13 Score=121.61 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=145.4
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHH--------
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYD-------- 159 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~-------- 159 (365)
-..+-...+.++. ..|++++|+..--..+.+++. +++..++.+.|+.+|+++|.++|++..
T Consensus 168 c~~a~~lka~cl~-~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 168 CFKAKLLKAECLA-FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hhHHHHhhhhhhh-hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 3445566667774 889999998888888888765 566678899999999999999988754
Q ss_pred ----HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 160 ----ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 160 ----~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.|...|+-.+..|+ |..|.++|..+|.++|++ +.+|.+++.+... +|+..+|+
T Consensus 247 k~le~~k~~gN~~fk~G~--------------y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r----Lgrl~eai- 307 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGN--------------YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR----LGRLREAI- 307 (486)
T ss_pred HHHHHHHhhhhhHhhccc--------------hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc----cCCchhhh-
Confidence 35555666666666 999999999999999984 6789999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
..+..++.+|+.+..++...|.|+..++++ ++|++.|+++++...+ ......|..+-..+.+
T Consensus 308 ------sdc~~Al~iD~syikall~ra~c~l~le~~----------e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 308 ------SDCNEALKIDSSYIKALLRRANCHLALEKW----------EEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred ------hhhhhhhhcCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 779999999999999999999999999996 9999999999999876 6666666666555553
No 64
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.50 E-value=1.1e-12 Score=115.39 Aligned_cols=204 Identities=15% Similarity=0.139 Sum_probs=171.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
...+|.+++-++-+|.-++ ..|++..|+..|-.|+..+|.. +...|.-.-|+..+.++|++.|+...+.
T Consensus 31 ~~~~~advekhlElGk~ll-a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELL-ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred hcCCHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 4566778888999999995 9999999999999999999983 4455888899999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------HHHhcCCHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISD--------RAKMRGRTKEAE 230 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~--------~~~~~g~~~~A~ 230 (365)
..+|.++..+|. +++|+..|++.|.-+|++ .++...|+.+-.. .+.-.|++..++
T Consensus 110 iQRg~vllK~Ge--------------le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 110 IQRGVVLLKQGE--------------LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred HHhchhhhhccc--------------HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 999999999999 999999999999999954 3444444443322 011245555555
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 231 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
......+++.|=++..+..++.||...|+. ..||..++.+-.+..++.+.++.++.+++..|+
T Consensus 176 -------~~i~~llEi~~Wda~l~~~Rakc~i~~~e~----------k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 176 -------EMITHLLEIQPWDASLRQARAKCYIAEGEP----------KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred -------HHHHHHHhcCcchhHHHHHHHHHHHhcCcH----------HHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 789999999999999999999999999997 999999999999999999999999999999998
Q ss_pred hhhhhcCcCCCCCCCcc
Q 017806 311 DTLRTGGTVNPREVSPN 327 (365)
Q Consensus 311 ~~~a~~~~~~~~~~~~~ 327 (365)
....+...+.+..++|.
T Consensus 239 ~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHHHHHHHHccCcc
Confidence 87666655555556655
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.7e-12 Score=112.05 Aligned_cols=196 Identities=12% Similarity=0.075 Sum_probs=163.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHhCCCC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIERNPED 157 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~~p~~ 157 (365)
+..+|...++++.+|+.+ .+.|..|.||...+..+..... .++..|-++.|...|........--
T Consensus 62 l~~d~~t~e~~ltLGnLf-RsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa 140 (389)
T COG2956 62 LQEDPETFEAHLTLGNLF-RSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA 140 (389)
T ss_pred HhcCchhhHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh
Confidence 467889999999999999 5999999999999877665422 4666799999999999998876666
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
..++..|-.+|....+ |++||+.-++..++.+.. +..+..|+..+.. ..+++.|+
T Consensus 141 ~~AlqqLl~IYQ~tre--------------W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d~A~-- 200 (389)
T COG2956 141 EGALQQLLNIYQATRE--------------WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVDRAR-- 200 (389)
T ss_pred HHHHHHHHHHHHHhhH--------------HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHHHHH--
Confidence 7899999999999999 999999999999998874 3345555555555 55666665
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~ 311 (365)
..+.+|++.||+...+-..+|.+....|++ +.|++.++.+++.||.+ +++...|..||..+|+.
T Consensus 201 -----~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 201 -----ELLKKALQADKKCVRASIILGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred -----HHHHHHHhhCccceehhhhhhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 889999999999999999999999999996 99999999999999988 57888999999999987
Q ss_pred hhhhcCcCCCCC
Q 017806 312 TLRTGGTVNPRE 323 (365)
Q Consensus 312 ~~a~~~~~~~~~ 323 (365)
.......+.+.+
T Consensus 266 ~~~~~fL~~~~~ 277 (389)
T COG2956 266 AEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHHH
Confidence 765544433333
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.49 E-value=6e-13 Score=124.38 Aligned_cols=195 Identities=12% Similarity=-0.005 Sum_probs=142.8
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+|+.+.++..+|.++ ...|+.+.+...+.++....+. .....|++++|+..++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLL-LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 678888888888888 4788888888888877766553 23445888888888888888888888777
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
.. +..+...|+.... ...+...+......+|....++..+|.++.. .|++++|+ ..++
T Consensus 81 ~~-~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~-------~~~~ 138 (355)
T cd05804 81 KL-HLGAFGLGDFSGM----------RDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAE-------EAAR 138 (355)
T ss_pred HH-hHHHHHhcccccC----------chhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 76 6666666651111 4444444444445566677777788888888 88888888 6788
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhhhhhhhcC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH----RAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
++++++|+++.++..+|.++...|++ ++|+.++++++...|.++ ..+..++.++...|+...+...
T Consensus 139 ~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 139 RALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888888888888888886 888888888888776432 3456788888888887776655
Q ss_pred cCCCC
Q 017806 318 TVNPR 322 (365)
Q Consensus 318 ~~~~~ 322 (365)
+....
T Consensus 209 ~~~~~ 213 (355)
T cd05804 209 YDTHI 213 (355)
T ss_pred HHHHh
Confidence 54433
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.49 E-value=2.5e-12 Score=109.65 Aligned_cols=147 Identities=21% Similarity=0.157 Sum_probs=135.2
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..|+-+.+..+..+++..+|.+...+..+|...+..|+ |.+|+..++++..+.|++..+|+.+|.+
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--------------~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--------------FGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--------------hHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 34555667777777778889999999889999999999 9999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
|.+ .|++++|. ..|.+++++.|+.+.+.+|+|..|.-.|++ +.|..++..+....+.+.
T Consensus 144 ldq----~Gr~~~Ar-------~ay~qAl~L~~~~p~~~nNlgms~~L~gd~----------~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 144 LDQ----LGRFDEAR-------RAYRQALELAPNEPSIANNLGMSLLLRGDL----------EDAETLLLPAYLSPAADS 202 (257)
T ss_pred HHH----ccChhHHH-------HHHHHHHHhccCCchhhhhHHHHHHHcCCH----------HHHHHHHHHHHhCCCCch
Confidence 999 99999999 889999999999999999999999999997 999999999999989899
Q ss_pred HHHHHHHHHHHHhhhhhhhhcC
Q 017806 296 RAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 296 ~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
.+..||+.+....|+...+...
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhh
Confidence 9999999999999988777654
No 68
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.49 E-value=1.4e-12 Score=104.26 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=100.6
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHH
Q 017806 150 AIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE 228 (365)
Q Consensus 150 al~~~-p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~ 228 (365)
...+. ++.-+..+.+|..+...|+ +++|+..|+-+..++|.+...|++||.++.. +|+|.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~--------------l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~ 87 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKE--------------FAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGE 87 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHH
Confidence 34456 6777889999999999999 9999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 229 A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
|+ ..|.+++.++|+++..++++|.|+...|+. +.|++.|+.|+...
T Consensus 88 AI-------~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~----------~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 88 AI-------YAYGRAAQIKIDAPQAPWAAAECYLACDNV----------CYAIKALKAVVRIC 133 (157)
T ss_pred HH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHh
Confidence 99 889999999999999999999999999997 99999999999885
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.5e-12 Score=104.26 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=114.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH
Q 017806 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 272 (365)
Q Consensus 193 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~ 272 (365)
+.|++++.++|++....+.+|.++.. .|++++|+ ..+++++..+|+++.+|.++|.++..+|++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----- 67 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEAL-------KLFQLLAAYDPYNSRYWLGLAACCQMLKEY----- 67 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----
Confidence 57899999999999999999999999 99999999 779999999999999999999999999996
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 273 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
++|+..|++++..+|+++..++++|.++...|+. ..+..+|..+..++|+...+..
T Consensus 68 -----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-------------------~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 68 -----EEAIDAYALAAALDPDDPRPYFHAAECLLALGEP-------------------ESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred -----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH-------------------HHHHHHHHHHHHhccccchHHH
Confidence 9999999999999999999999999999999865 4566677888888888877666
Q ss_pred HHHhhhhh
Q 017806 353 ALRLVRSM 360 (365)
Q Consensus 353 al~~~~~~ 360 (365)
..+.+..+
T Consensus 124 ~~~~~~~~ 131 (135)
T TIGR02552 124 LKERAEAM 131 (135)
T ss_pred HHHHHHHH
Confidence 55555444
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=3.6e-12 Score=120.83 Aligned_cols=240 Identities=12% Similarity=-0.009 Sum_probs=175.4
Q ss_pred HHhcCCChhHhhhcHHHHHHHHHHhhccC--hh--------hhhhhhhHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 017806 102 SFSQGNTPHQLAEQNNAAMELINSVTGVD--EE--------GRSRQRILTFAAKRYANAIERNPEDYDA-LYNWALVLQE 170 (365)
Q Consensus 102 ~~~~g~~~~~~~g~~~~A~~~~~~al~~~--~~--------~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~ 170 (365)
.+..|.+.+ ..|+++.|.+...++.... |. .-...|+++.|..+|.++.+.+|+...+ ....+.++..
T Consensus 87 ~~~~gl~a~-~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKL-AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 445565553 6677777777777665543 22 1134477777888888877777776433 3344777777
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT------------- 237 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~------------- 237 (365)
.|+ +++|+..++++++.+|+++.++..++.+|.. .|+|++|+..+.+..
T Consensus 166 ~g~--------------~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l 227 (398)
T PRK10747 166 RNE--------------NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAML 227 (398)
T ss_pred CCC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 777 7788888888888888887777777777777 777777775544321
Q ss_pred ------------------HHHHHHH----hcCCCCHHHHHHHHHHHHHhcCcchhHH---------------------hh
Q 017806 238 ------------------KNYEKAV----QLNWNSPQALNNWGLALQELSAIVPARE---------------------KQ 274 (365)
Q Consensus 238 ------------------~~~~~al----~~~p~~~~~~~~lg~~~~~~~~~~~~~~---------------------~~ 274 (365)
..+.+.. +..|+++.++..++..+...|+.+.|.. ..
T Consensus 228 ~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~ 307 (398)
T PRK10747 228 EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKT 307 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccC
Confidence 1111111 2346688899999999999999877766 44
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch-HHHHHHHHHHHHHhcCccHHHHHHH
Q 017806 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE-LYSQSAIYIAAAHALKPSYSVYSSA 353 (365)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~a 353 (365)
++++++++.+++.++.+|+++..+..+|.++...+++.++...+..+....|.. .+......+.+.++.+.+...|.++
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999988888887777775 3466666767777777788888888
Q ss_pred HHhhhhh
Q 017806 354 LRLVRSM 360 (365)
Q Consensus 354 l~~~~~~ 360 (365)
+.++.+-
T Consensus 388 l~~~~~~ 394 (398)
T PRK10747 388 LMLTLQN 394 (398)
T ss_pred Hhhhccc
Confidence 8776543
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-12 Score=125.51 Aligned_cols=217 Identities=19% Similarity=0.132 Sum_probs=169.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
...+|+++.+.|.++.-| ...++...|+++.++++.+++. ....++++..|+.....+++-.|+|...
T Consensus 471 v~~d~~dp~~if~lalq~-A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQY-AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HhcCCCCchHHHHHHHHH-HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 678999999999999999 5999999999999999999654 3455688999999999888877773221
Q ss_pred HHHHHHHHHHhcCcccc---------------------------------------------------------------
Q 017806 161 LYNWALVLQESADNVSL--------------------------------------------------------------- 177 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a--------------------------------------------------------------- 177 (365)
......+-...++...+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 11111110000000000
Q ss_pred --------------------------CCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 178 --------------------------DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 178 --------------------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.+......+..+++..|+.++-.++|..+..|+..|.++.. .|.+.+|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~- 704 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAK- 704 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHH-
Confidence 00001122567888889999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS--KFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
..|..|+.+||+++.+...+|.++.+.|+. .-|.. .+..+++++|.++++|+.||.++..+|
T Consensus 705 ------~af~~Al~ldP~hv~s~~Ala~~lle~G~~----------~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 705 ------EAFLVALALDPDHVPSMTALAELLLELGSP----------RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred ------HHHHHHHhcCCCCcHHHHHHHHHHHHhCCc----------chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 789999999999999999999999999986 65665 999999999999999999999999999
Q ss_pred hhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHH
Q 017806 310 EDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 349 (365)
+.. ++...|..+.++++..++
T Consensus 769 d~~-------------------~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 769 DSK-------------------QAAECFQAALQLEESNPV 789 (799)
T ss_pred chH-------------------HHHHHHHHHHhhccCCCc
Confidence 664 566677777777776654
No 72
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=4.2e-11 Score=101.48 Aligned_cols=165 Identities=16% Similarity=0.061 Sum_probs=137.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..|+.+-|..|+++.....|++..+-..-|..+...|+ +++|+++|+..++-+|.+.-++...-.+
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~--------------~~~A~e~y~~lL~ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN--------------YKEAIEYYESLLEDDPTDTVIRKRKLAI 129 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc--------------hhhHHHHHHHHhccCcchhHHHHHHHHH
Confidence 34778889999999888889999988888999999998 9999999999999999988888877777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
... +|+.-+|| +.+..-++..+++.++|..++.+|...|++ ++|.=||++.+-++|.++
T Consensus 130 lka----~GK~l~aI-------k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 130 LKA----QGKNLEAI-------KELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHH----cCCcHHHH-------HHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCcH
Confidence 777 88888888 778888888899999999999999999885 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHH
Q 017806 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 296 ~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
..+..+|.+++..|..+ .+..++.||+++..+.|.+.+..
T Consensus 189 l~f~rlae~~Yt~gg~e----------------N~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQGGAE----------------NLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHHHHHhhHH----------------HHHHHHHHHHHHHHhChHhHHHH
Confidence 99999999999888432 34557777777777777544433
No 73
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.9e-12 Score=116.39 Aligned_cols=213 Identities=16% Similarity=0.133 Sum_probs=153.1
Q ss_pred HhcCCChhHhhhcHHHHHHHHHHhhccChh-----------hhhhh--hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 103 FSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQ--RILTFAAKRYANAIERNPEDYDALYNWALVLQ 169 (365)
Q Consensus 103 ~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 169 (365)
.+.+..++ ..|+++.|++.+.-.-..+.. .++.+ .++..|.++...++.++..++.++.+.|++.+
T Consensus 423 i~ka~~~l-k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELL-KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHH-hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 34444553 788888888887654444422 12332 47888888888888888888888888888888
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
..|+ +++|.+.|++++.-+.....+++++|..+.. +|+.++|+ .+|-+.-.+--+
T Consensus 502 ~ngd--------------~dka~~~ykeal~ndasc~ealfniglt~e~----~~~ldeal-------d~f~klh~il~n 556 (840)
T KOG2003|consen 502 ANGD--------------LDKAAEFYKEALNNDASCTEALFNIGLTAEA----LGNLDEAL-------DCFLKLHAILLN 556 (840)
T ss_pred ecCc--------------HHHHHHHHHHHHcCchHHHHHHHHhcccHHH----hcCHHHHH-------HHHHHHHHHHHh
Confidence 8888 8888888888888888888888888888888 88888888 556665555566
Q ss_pred CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--
Q 017806 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN-- 327 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~-- 327 (365)
++++++.++.+|.-+.+. .+|+++|.++..+-|+++.++..||.+|-+.|+...+-.++-....+-|.
T Consensus 557 n~evl~qianiye~led~----------aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni 626 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDP----------AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI 626 (840)
T ss_pred hHHHHHHHHHHHHHhhCH----------HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence 778888888888888876 78888888888888888888888888888777766654433222222221
Q ss_pred -------------hHHHHHHHHHHHHHhcCccHHHHH
Q 017806 328 -------------ELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 328 -------------~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
..+..+..||+++.-+.|...-|.
T Consensus 627 e~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 124677788888888888765444
No 74
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=4.4e-12 Score=128.55 Aligned_cols=186 Identities=10% Similarity=-0.015 Sum_probs=157.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
.-..|..+...+..+.+.. +.|+++.|++.|++++..+|.. +...|++++|+.++++++.-.|.....+
T Consensus 27 ~~~~p~~~~~~y~~aii~~-r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRA-RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred cccCccchhHHHHHHHHHH-hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 4567889999999999995 9999999999999999999873 1345999999999999994444555555
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++..+|+ +++|++.|+++++++|+++.++..++.++.. .++.++|+ ..++
T Consensus 106 lalA~ly~~~gd--------------yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl-------~~l~ 160 (822)
T PRK14574 106 ASAARAYRNEKR--------------WDQALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVL-------KQAT 160 (822)
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHH-------HHHH
Confidence 556889999999 9999999999999999999999999999999 99999999 7799
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
+++..+|.+... ..++.++...++. .+|+..|+++++.+|++..++..+..++...|-...+
T Consensus 161 ~l~~~dp~~~~~-l~layL~~~~~~~----------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a 222 (822)
T PRK14574 161 ELAERDPTVQNY-MTLSYLNRATDRN----------YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPA 222 (822)
T ss_pred HhcccCcchHHH-HHHHHHHHhcchH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 999999985544 4445555445553 6799999999999999999999999999999855443
No 75
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.45 E-value=3e-12 Score=119.12 Aligned_cols=115 Identities=23% Similarity=0.131 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+...|..++..|+ |++|+.+|+++++++|+++.+|+++|.++.. +|++++|+ ..+
T Consensus 5 l~~~a~~a~~~~~--------------~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl-------~~~ 59 (356)
T PLN03088 5 LEDKAKEAFVDDD--------------FALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAV-------ADA 59 (356)
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence 4567888888888 9999999999999999999999999999999 99999999 789
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
++++.++|+++.+|+++|.+|..+|++ ++|+..|++++.++|++..+...++.|...+..
T Consensus 60 ~~Al~l~P~~~~a~~~lg~~~~~lg~~----------~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 60 NKAIELDPSLAKAYLRKGTACMKLEEY----------QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999996 999999999999999999999999999877754
No 76
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=1.3e-11 Score=105.27 Aligned_cols=165 Identities=22% Similarity=0.158 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 218 (365)
+...+...+-+....+|++..+ .+++..+...|+ -+.+..+..++..-+|.+......+|.....
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~--------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~ 112 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGD--------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIR 112 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhccc--------------ccchHHHHhhhhccCcccHHHHHHHHHHHHH
Confidence 3555778888888999999999 999999999999 8999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (365)
Q Consensus 219 ~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (365)
.|+|.+|+ ..++++..++|+++.+|+.+|.+|.+.|++ ++|...|.+++++.|+++.+.
T Consensus 113 ----~g~~~~A~-------~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 113 ----NGNFGEAV-------SVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred ----hcchHHHH-------HHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhh
Confidence 99999999 889999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhh
Q 017806 299 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (365)
Q Consensus 299 ~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~ 358 (365)
.|||..+.-.|+.. .+..++..+...-+++......+.++.
T Consensus 172 nNlgms~~L~gd~~-------------------~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 172 NNLGMSLLLRGDLE-------------------DAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred hhHHHHHHHcCCHH-------------------HHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999664 344555555555555666665555443
No 77
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=5.7e-11 Score=100.70 Aligned_cols=171 Identities=16% Similarity=0.083 Sum_probs=151.4
Q ss_pred hhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~ 181 (365)
..|+.+.|...+++.....|.+ +...|++++|+++|+..++.||.+...+...-.+...+|+
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK-------- 135 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK-------- 135 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC--------
Confidence 6688999999999877777762 2334999999999999999999999999888888888898
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 261 (365)
--+||+.+..-++..+.+.++|..|+.+|.. .|+|+.|. -+++..+-+.|.++-.+..+|.++
T Consensus 136 ------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~-------fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 136 ------NLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAA-------FCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred ------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8899999999999999999999999999999 99999999 999999999999999999999999
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
+.+|.. .+++-|.++|.++++++|.+..+++.+-.|...+.+...+
T Consensus 199 Yt~gg~-------eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 199 YTQGGA-------ENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred HHHhhH-------HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence 999885 6678999999999999999999998887777766654443
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=3.5e-11 Score=114.07 Aligned_cols=189 Identities=11% Similarity=0.053 Sum_probs=155.2
Q ss_pred chHHHHhc-CCChhHhhhcHHHHHHHHHHhhccChhh-----------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 98 VTDASFSQ-GNTPHQLAEQNNAAMELINSVTGVDEEG-----------RSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 98 ~~~a~~~~-g~~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
++..++.+ +... ...|+++.|..+|.++...+|+. +...|++++|+..+++.++.+|+++.++..++
T Consensus 116 ~p~l~~llaA~aA-~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~ 194 (398)
T PRK10747 116 QPVVNYLLAAEAA-QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAE 194 (398)
T ss_pred chHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35555555 4454 49999999999999999988763 23359999999999999999999999999999
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH------------------------------------------hCC
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATR------------------------------------------LCP 203 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~------------------------------------------~~p 203 (365)
.+|...|+ +++|+..+.+..+ ..|
T Consensus 195 ~~~~~~gd--------------w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 195 QAYIRTGA--------------WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHh--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 99999999 6666644443332 234
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------------------HHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------------ATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 204 ~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------------------------A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
+++.++..++..+.. .|+.++|...+++ +++..++.++.+|+++..+..+|.
T Consensus 261 ~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 261 HQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 467777888888888 9999999987543 688888899999999999999999
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
++...+++ ++|.++|+++++..|++ ..+..++.++..+|+..++..
T Consensus 337 l~~~~~~~----------~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 337 LLMKHGEW----------QEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred HHHHCCCH----------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Confidence 99999996 99999999999999985 446789999999998764433
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=4.3e-12 Score=120.88 Aligned_cols=188 Identities=22% Similarity=0.198 Sum_probs=156.5
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------------------hhhhhhhHHHHHHHHHHHHHhC-------
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------------------GRSRQRILTFAAKRYANAIERN------- 154 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~~~~A~~~~~~al~~~------- 154 (365)
.....+|.+|+ .++++++|+..|++++..... .+..+|+|.+|..++++++++.
T Consensus 242 ~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 242 SMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 33455899995 999999999999999988743 3667799999999999999863
Q ss_pred -CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHhcCC
Q 017806 155 -PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 155 -p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
|.-...+.+++.++..+++ +++|+..|++++++- +.-+..+.+||.+|.. +|+
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~--------------~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~----~gk 382 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNE--------------YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK----MGK 382 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcc--------------hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH----hcc
Confidence 4446678899999999999 999999999999872 2346789999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-------CCCCHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-------QFDFHRA 297 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~ 297 (365)
+.+|.++|++|+...+..... ++.....++++|..|.+++++ .+|...|.+++.+ .|+--..
T Consensus 383 ~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~----------~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY----------EEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc----------chHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 999999999998888776654 455678899999999999996 8888888888766 3444678
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 017806 298 IYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~~ 316 (365)
+.||+.+|-.+|+.+.+..
T Consensus 453 ~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 453 YLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHHHHcccHHHHHH
Confidence 9999999999998876554
No 80
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.39 E-value=8e-11 Score=111.42 Aligned_cols=195 Identities=12% Similarity=0.029 Sum_probs=154.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh---------hhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG---------RSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
.+..|++.++|+..-.+.+ ...+++.|..+|.++....+.. ...+++.++|++.++++|+.+|.....|.
T Consensus 611 f~~~pnseeiwlaavKle~-en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~l 689 (913)
T KOG0495|consen 611 FEANPNSEEIWLAAVKLEF-ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWL 689 (913)
T ss_pred HHhCCCcHHHHHHHHHHhh-ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHH
Confidence 4667777777777666663 7778888888888888777652 12348999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.++.++++ .+.|...|...+...|+....|..|+.+-.. .|....|. ..+.+
T Consensus 690 mlGQi~e~~~~--------------ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR-------~ildr 744 (913)
T KOG0495|consen 690 MLGQIEEQMEN--------------IEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRAR-------SILDR 744 (913)
T ss_pred HHhHHHHHHHH--------------HHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHH-------HHHHH
Confidence 99999999999 8888888888888888888888888888877 77777777 55666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCcchhHH--------------------------------------------------
Q 017806 243 AVQLNWNSPQALNNWGLALQELSAIVPARE-------------------------------------------------- 272 (365)
Q Consensus 243 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~-------------------------------------------------- 272 (365)
+.-.+|+++..|...-..-.+.|+...|..
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia 824 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIA 824 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHH
Confidence 666666666666666666556665544433
Q ss_pred ----hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 273 ----KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 273 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
....+++|.++|.+++..+|++..+|.++=..+...|...
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 3366799999999999999999999988888888888443
No 81
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.39 E-value=8.2e-12 Score=116.23 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=102.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
.+..|+|++|+.+|.++++++|++..+++++|.++..+|+ +++|+..+++++.++|+++.+|+++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------------~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------------FTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3567899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
.++.. +|++++|+ ..|+++++++|++..+...++.|...+..
T Consensus 78 ~~~~~----lg~~~eA~-------~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 78 TACMK----LEEYQTAK-------AALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHH----hCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999 99999999 88999999999999999999999777744
No 82
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=2.1e-11 Score=116.07 Aligned_cols=188 Identities=13% Similarity=0.026 Sum_probs=152.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC---hhhh-----------hhhhhHHHHHHHHHHHHHhCC--
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD---EEGR-----------SRQRILTFAAKRYANAIERNP-- 155 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~---~~~~-----------~~~~~~~~A~~~~~~al~~~p-- 155 (365)
....|+++.++..++.++ ...|++++|...+.+..+.. +... ...+..+++.+.+.++.+..|
T Consensus 180 ~~~~P~~~~~l~ll~~~~-~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 180 LEMAPRHKEVLKLAEEAY-IRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred HHhCCCCHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH
Confidence 567899999999999999 59999999999999998653 2211 222334444558888888888
Q ss_pred --CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHhcCCHHHHHH
Q 017806 156 --EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF--YNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 156 --~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
+++.++..+|..+...|+ +++|+..++++++..|++.... ......... .++...++
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~--------------~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~- 319 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDD--------------HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLE- 319 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHH-
Confidence 589999999999999999 9999999999999999987532 223333334 56666666
Q ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSP--QALNNWGLALQELSAIVPAREKQTIVRTAISKFR--AAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+.++++++.+|+++ .....+|.++.+.|++ ++|.++|+ ++++.+|++.. +..+|.++..
T Consensus 320 ------~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~----------~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~ 382 (409)
T TIGR00540 320 ------KLIEKQAKNVDDKPKCCINRALGQLLMKHGEF----------IEAADAFKNVAACKEQLDAND-LAMAADAFDQ 382 (409)
T ss_pred ------HHHHHHHHhCCCChhHHHHHHHHHHHHHcccH----------HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH
Confidence 88999999999999 8899999999999996 99999999 68888887555 6699999999
Q ss_pred hhhhhhhhc
Q 017806 308 LAEDTLRTG 316 (365)
Q Consensus 308 ~g~~~~a~~ 316 (365)
+|+..++..
T Consensus 383 ~g~~~~A~~ 391 (409)
T TIGR00540 383 AGDKAEAAA 391 (409)
T ss_pred cCCHHHHHH
Confidence 998765544
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=1e-10 Score=110.73 Aligned_cols=240 Identities=16% Similarity=0.120 Sum_probs=196.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---h-------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---G-------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---~-------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+...|.+++.+-..|..+ ..+|+.++|..+.+.++..++. | +...++|++|+++|..|+.++|+|...|
T Consensus 34 L~k~~eHgeslAmkGL~L-~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTL-NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HHhCCccchhHHhccchh-hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 678999999999999999 5999999999999999998876 2 2234899999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH---------
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL--------- 232 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~--------- 232 (365)
..++.+..++++ |+.....-.+.+++.|.....|..++.++.- .|++..|...
T Consensus 113 rDlslLQ~QmRd--------------~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 113 RDLSLLQIQMRD--------------YEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHHHHHh--------------hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhc
Confidence 999999999999 8888888888888888888888888888777 7777776654
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHhcCCCCHH
Q 017806 233 ------------------------------------------------------------WKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 233 ------------------------------------------------------------~~~A~~~~~~al~~~p~~~~ 252 (365)
++.|+..|+..+..+|++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 22378899999999999999
Q ss_pred HHHHHHHHHH-HhcCcchhHH-----------------------------------------------------------
Q 017806 253 ALNNWGLALQ-ELSAIVPARE----------------------------------------------------------- 272 (365)
Q Consensus 253 ~~~~lg~~~~-~~~~~~~~~~----------------------------------------------------------- 272 (365)
.+..+-.++. -.+..+....
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~ 334 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE 334 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh
Confidence 8888877775 2222211100
Q ss_pred ------------------------------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 273 ------------------------------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 273 ------------------------------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
+.|+++.|..+...||...|+..+.+...|.+
T Consensus 335 k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 335 KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 67999999999999999999999999999999
Q ss_pred HHHhhhhhhhhcCcCCCCCCCcchHH--HHHHHHHHHHHhcCccHHHH
Q 017806 305 LYGLAEDTLRTGGTVNPREVSPNELY--SQSAIYIAAAHALKPSYSVY 350 (365)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~~a~~~~~~a~~~~~~~~~~ 350 (365)
+...|....+......+..++..+.| ...+.|+-+|..++.+....
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999998888887777777777655 25666777777666554433
No 84
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.38 E-value=5.5e-12 Score=101.99 Aligned_cols=121 Identities=28% Similarity=0.411 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+|+.|.+.++.....+|.+++.+++.|.++.++.+++.+.+....+++|+.-|++||.++|+...+++++|.+|..++..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 46777799999999999999999999999999999988888889999999999999999999999999999999999954
Q ss_pred hhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
.... ...+..|..+..+|.+|...+|++..|..+|.+....
T Consensus 86 ~~d~--------~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 86 TPDT--------AEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp ---H--------HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred cCCh--------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 3211 1234568999999999999999999999999887654
No 85
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=1.9e-11 Score=97.66 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=91.4
Q ss_pred HHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 199 TRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 199 l~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
..++ ++.-+..+.+|..+.. .|++++|+ +.|+.+..+||.++..|++||.++..+|++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~----~G~l~~A~-------~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~---------- 85 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLME----VKEFAGAA-------RLFQLLTIYDAWSFDYWFRLGECCQAQKHW---------- 85 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------
Confidence 4456 7788899999999999 99999999 789999999999999999999999999996
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
++|+.+|.+|+.++|+++.+++++|.|++.+|+...+...+
T Consensus 86 ~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 86 GEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999887666544
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=7.9e-11 Score=113.43 Aligned_cols=238 Identities=18% Similarity=0.151 Sum_probs=180.3
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------h------------------hhhhhhHHHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------G------------------RSRQRILTFAAKRYA 148 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------~------------------~~~~~~~~~A~~~~~ 148 (365)
.|.++..+.....++.+..+..++++++..+++.+-.. + ..+.....++++.++
T Consensus 389 ~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 389 QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 46666666655555547889999999999999984321 1 122356789999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 149 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 149 ~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
++++.+|.|+.+.++++.-|...++ .+.|....+++++++ .+++.+|..|+.++.. .+++.
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~--------------l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~ 530 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQ--------------LTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLK 530 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhH
Confidence 9999999999999999999999999 999999999999995 4678999999999999 99999
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 017806 228 EAEELWKQ------------------------------------------------------------------------ 235 (365)
Q Consensus 228 ~A~~~~~~------------------------------------------------------------------------ 235 (365)
+|+...+-
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 98876221
Q ss_pred ----------------------------------------------------------HHHHHHHHHhcCCCCHHHHHHH
Q 017806 236 ----------------------------------------------------------ATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 236 ----------------------------------------------------------A~~~~~~al~~~p~~~~~~~~l 257 (365)
+..++..+-.++|..+.+|+..
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 2344555555666667777777
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc--CcCCCCCCCcc--hHHHHH
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG--GTVNPREVSPN--ELYSQS 333 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~--~~~~~~~~~~~--~~~~~a 333 (365)
|.++...|+. .+|.+.|..|+.++|+++.+...+|.++...|+...+.. -...+..++|. +.|...
T Consensus 691 G~~~~~~~~~----------~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 691 GLLLEVKGQL----------EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hHHHHHHHhh----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 7777777775 999999999999999999999999999999996554443 22223333333 455666
Q ss_pred HHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 334 AIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
+..|.+.+..+.+-+-|..++.+.+..
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCC
Confidence 666677777766666666666665543
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.34 E-value=5.3e-11 Score=99.08 Aligned_cols=136 Identities=21% Similarity=0.173 Sum_probs=108.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPED--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAF 209 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 209 (365)
+-.+.+..+...+...++.++.+ ..+|+.+|.++..+|+ +++|+..|++++.+.|+ .+.++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~l~~~~~~~~~~~ 75 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE--------------YAEALQNYYEAMRLEIDPYDRSYIL 75 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhccccchhhHHHH
Confidence 44455667777776666666655 6678999999999999 99999999999999776 34689
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc----chhHHhhhHHHHHHHHHH
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI----VPAREKQTIVRTAISKFR 285 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----~~~~~~~~~~~~A~~~~~ 285 (365)
+++|.++.. .|++++|+ ..|++++.++|.+...+.++|.++..+|+. .........+++|+..|+
T Consensus 76 ~~lg~~~~~----~g~~~eA~-------~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 76 YNIGLIHTS----NGEHTKAL-------EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999999 99999999 778999999999999999999999955532 011224456678888888
Q ss_pred HHHHhCCCCH
Q 017806 286 AAIQLQFDFH 295 (365)
Q Consensus 286 ~al~~~p~~~ 295 (365)
+++..+|.+.
T Consensus 145 ~a~~~~p~~~ 154 (168)
T CHL00033 145 QAIALAPGNY 154 (168)
T ss_pred HHHHhCcccH
Confidence 8999998754
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.9e-11 Score=107.38 Aligned_cols=182 Identities=16% Similarity=0.082 Sum_probs=155.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.+..++...|..+. ..|+..+|+-.|+.|+.+.|. +|...|.+.+|.-....+++..|.++.++
T Consensus 327 I~~~~r~~~alilKG~lL~-~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLI-ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred hccCcccchHHHhccHHHH-hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence 6788889999999999994 999999999999999988865 56777889999999999999999999888
Q ss_pred HHHH-HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 162 YNWA-LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 162 ~~lg-~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
..+| .++..... --++|..++++++.++|....+...++.++.. .|++..++ +.+
T Consensus 406 tL~g~~V~~~dp~-------------~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i-------~LL 461 (564)
T KOG1174|consen 406 TLFGTLVLFPDPR-------------MREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDII-------KLL 461 (564)
T ss_pred hhhcceeeccCch-------------hHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHH-------HHH
Confidence 8887 55543322 16899999999999999999999999999999 99999999 668
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++.+...|+ ...+..||.++...+.+ .+|.+.|..|++++|++-.+...|-..-....
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne~----------Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNEP----------QKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 888877764 67889999999999996 99999999999999999998887766544443
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.31 E-value=1.1e-10 Score=115.03 Aligned_cols=243 Identities=18% Similarity=0.153 Sum_probs=184.1
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------------------------- 132 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------- 132 (365)
+..++.-..++..+|.+| +..-+...|...|.+|..+|+.
T Consensus 485 lrld~~~apaf~~LG~iY-rd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIY-RDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred HhcccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 567888899999999999 5888999999999999999954
Q ss_pred -------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 133 -------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 133 -------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
.+..-+++.+|+..|+.+++.+|.+..+|..+|.+|-..|+ |..|+..|.+|..++|.+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr--------------y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR--------------YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc--------------eehHHHhhhhhHhcCcHh
Confidence 12333899999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------HHHHHHHHHhc-----
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQ----------------------------------ATKNYEKAVQL----- 246 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~----------------------------------A~~~~~~al~~----- 246 (365)
.-..+..+.+... .|+|.+|+..+.. |+..++++++.
T Consensus 630 ~y~~fk~A~~ecd----~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 630 KYGRFKEAVMECD----NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999 9999999876432 11112211111
Q ss_pred --C---------------------------------------------------------------CCCHHHHHHHHHHH
Q 017806 247 --N---------------------------------------------------------------WNSPQALNNWGLAL 261 (365)
Q Consensus 247 --~---------------------------------------------------------------p~~~~~~~~lg~~~ 261 (365)
. -.++..|+|+|.-|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 0 01245677777766
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--------------
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN-------------- 327 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~-------------- 327 (365)
.+.-.. ..+...+-..|+.++++++++..++...|+.||.+ ...|...-+...++.++-..|.
T Consensus 786 lr~f~~--l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLL--LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHH--cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 651100 00011223689999999999999999999999998 5556666666666555544332
Q ss_pred -hHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 328 -ELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 328 -~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
..+..+...|.++..++|.+...+-...+
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHH
Confidence 34778888899999999998765544433
No 90
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.31 E-value=1.5e-10 Score=96.66 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
+....+++++|.++...|+ +++|+.+|++++.+.|+. ..++.++|.++.. .|++++|+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~- 92 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGE--------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKAL- 92 (172)
T ss_pred hhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHH-
Confidence 3567789999999999999 999999999999987763 5789999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchh----HHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
..|++++..+|++...+.++|.++..+|+...+ ......+++|++++++++..+|++ +...+..+..
T Consensus 93 ------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~ 163 (172)
T PRK02603 93 ------EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKT 163 (172)
T ss_pred ------HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHh
Confidence 779999999999999999999999999885322 225566788999999999999887 4555555555
Q ss_pred hhhh
Q 017806 308 LAED 311 (365)
Q Consensus 308 ~g~~ 311 (365)
.|+.
T Consensus 164 ~~~~ 167 (172)
T PRK02603 164 TGRS 167 (172)
T ss_pred cCcc
Confidence 5543
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=117.77 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=161.0
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
.-|........++..++ ..|=...|+..|++.-..++. ||...|+..+|.....+-++ .|.++..|..+|.+....
T Consensus 393 ~lpp~Wq~q~~laell~-slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLL-SLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred CCCCcchHHHHHHHHHH-HcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence 33444555566677774 788888999999888777765 56666888888888888888 666777788888765432
Q ss_pred c---------CccccC-----CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 172 A---------DNVSLD-----STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 172 ~---------~~~~a~-----~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
. ++.-++ +......+.|.++..+++..++++|-....|+++|.+..+ .+++..|.
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av------- 539 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV------- 539 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH-------
Confidence 2 222222 2223345779999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
++|.+++.++|++..+|+|++.+|.+.++. .+|...+++|+..+-+++.+|.|...+....|..+.+..
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k----------~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKK----------KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhh----------HHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 889999999999999999999999999997 999999999999999999999999999998887665543
No 92
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.31 E-value=1.1e-10 Score=97.06 Aligned_cols=102 Identities=23% Similarity=0.251 Sum_probs=85.5
Q ss_pred hhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPE---DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
..|++++|+..|++++.+.|+ .+.++.++|.++...|+ +++|+.+|++++.++|.+...+.++
T Consensus 47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------------HTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 345567777777777766554 34589999999999999 9999999999999999999999999
Q ss_pred HHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 213 AIAISDRA---KMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 213 g~~~~~~~---~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
|.++.... ...|++++|+..+++|+.+|++++..+|.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99998211 0289999999999999999999999998654
No 93
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.30 E-value=1.1e-10 Score=117.50 Aligned_cols=185 Identities=10% Similarity=-0.028 Sum_probs=137.4
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhh------------------hhHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQ------------------RILTFAA 144 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~------------------~~~~~A~ 144 (365)
..+|.+..++..+...+ ...+++++|+..+..++...|.. ++.. .++ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~-~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAY-KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHH
Confidence 34455555555555555 25566666666666555555540 1111 223 555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
.++...+-..+.+..+++.+|.||..+|+ +++|+..|+++++++|+|+.+.+++|..|.. .
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--------------~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~- 163 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNE--------------NKKLKGVWERLVKADRDNPEIVKKLATSYEE----E- 163 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-
Confidence 66666666667777999999999999999 9999999999999999999999999999999 8
Q ss_pred CHHHHHHHHHHHH-------------HHHHHHHhcCCCCHHHHHHH--------H------------HHHHHhcCcchhH
Q 017806 225 RTKEAEELWKQAT-------------KNYEKAVQLNWNSPQALNNW--------G------------LALQELSAIVPAR 271 (365)
Q Consensus 225 ~~~~A~~~~~~A~-------------~~~~~al~~~p~~~~~~~~l--------g------------~~~~~~~~~~~~~ 271 (365)
+.++|++++.+|+ ....+.+..+|.+.+.+..+ | .+|...
T Consensus 164 dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~------- 236 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL------- 236 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh-------
Confidence 9999999987764 44556677788766653322 2 344444
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
.+|++++..++.+|+++|+|..+...++.||...
T Consensus 237 ---~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 237 ---EDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred ---hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 4469999999999999999999999999999843
No 94
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.30 E-value=2.3e-10 Score=112.03 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=127.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|...+.++|+.+|.++.+|+.||.+|..+|+ .++|..++-.|-.++|.+.+.|..++.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd--------------~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD--------------IEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc--------------HHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 455899999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
...+ +|.+.+|. -+|.+||+.+|.+....+..+.+|.++|+. ..|...|.+.+++.|..
T Consensus 216 ls~~----~~~i~qA~-------~cy~rAI~~~p~n~~~~~ers~L~~~~G~~----------~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 216 LSEQ----LGNINQAR-------YCYSRAIQANPSNWELIYERSSLYQKTGDL----------KRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHh----cccHHHHH-------HHHHHHHhcCCcchHHHHHHHHHHHHhChH----------HHHHHHHHHHHhhCCch
Confidence 9999 99999999 889999999999999999999999999997 99999999999999822
Q ss_pred -H----HHHHHHHHHHHHhhhhhhhh
Q 017806 295 -H----RAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 295 -~----~~~~~lg~~~~~~g~~~~a~ 315 (365)
. ......+..+...++.+.+.
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1 12233355555555544443
No 95
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.29 E-value=1.4e-10 Score=93.94 Aligned_cols=117 Identities=32% Similarity=0.432 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
|+.|.+.++.....+|.+++.+++.|.++..+.++ .........+++|+.-|++||.++|+..++++++|.++..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf----k~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF----KQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH----S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999988762 11122345699999999999999999999999999999998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
++...+..+|..+|++|..+|++|+..+|++..+...|..+
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 88888999999999999999999999999987766555444
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.27 E-value=1.8e-10 Score=116.97 Aligned_cols=157 Identities=8% Similarity=0.043 Sum_probs=124.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+++|+++.|+..|+++++.+|.++.+...+..++...|+ +++|+.++++++...|........+|.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~--------------~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR--------------DQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC--------------cHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 557889999999999999999997555588888989999 999999999999444445555555688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .|++++|+ ..|+++++.+|+++.++..++.++...++. ++|+..+++++..+|.+
T Consensus 111 ly~~----~gdyd~Ai-------ely~kaL~~dP~n~~~l~gLa~~y~~~~q~----------~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 111 AYRN----EKRWDQAL-------ALWQSSLKKDPTNPDLISGMIMTQADAGRG----------GVVLKQATELAERDPTV 169 (822)
T ss_pred HHHH----cCCHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHhhcCCH----------HHHHHHHHHhcccCcch
Confidence 9999 99999999 789999999999999999999999999996 99999999999999985
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
... ..++.++...++...++..+...+...|.
T Consensus 170 ~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 170 QNY-MTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 553 44444444444443344443333343333
No 97
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.27 E-value=1.7e-10 Score=96.44 Aligned_cols=129 Identities=20% Similarity=0.284 Sum_probs=99.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE---DYDALYNWALVL 168 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~ 168 (365)
+...+....+++.+|..+. ..|++ ++|+.+|+++++..|+ ...++.++|.++
T Consensus 28 ~~~~~~~a~~~~~lg~~~~-~~g~~------------------------~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 82 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQ-ADGEY------------------------AEALENYEEALKLEEDPNDRSYILYNMGIIY 82 (172)
T ss_pred cccHhhhHHHHHHHHHHHH-HcCCH------------------------HHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 5556677777888888773 55554 5555555555554443 356899999999
Q ss_pred HHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHH
Q 017806 169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-------RTKEAEELWKQATKNYE 241 (365)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g-------~~~~A~~~~~~A~~~~~ 241 (365)
...|+ +++|+.+|++++.+.|++...+..+|.++.. .| +++.|+..+++|+..++
T Consensus 83 ~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 83 ASNGE--------------HDKALEYYHQALELNPKQPSALNNIAVIYHK----RGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred HHcCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999987 55 47788888899999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
+++..+|++ +...+..+...|+
T Consensus 145 ~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 145 QAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHhhCchh---HHHHHHHHHhcCc
Confidence 999999876 4455555555544
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=7.7e-10 Score=102.09 Aligned_cols=130 Identities=21% Similarity=0.093 Sum_probs=113.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..|+++.|+..+...+...|+|+..+-..+.++...++ ..+|++.+++++.++|+....+.++|.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------------~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------------AKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 35679999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH-------hhhHHHHHHHHHHHHH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE-------KQTIVRTAISKFRAAI 288 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~al 288 (365)
|.. .|++.+|+ ..+...+..+|+++..|..|+.+|..+|+..++.. -.|++++|+..+..+.
T Consensus 384 ll~----~g~~~eai-------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 384 LLK----GGKPQEAI-------RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHh----cCChHHHH-------HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999 99999999 88999999999999999999999999999833332 3355555555555554
Q ss_pred Hh
Q 017806 289 QL 290 (365)
Q Consensus 289 ~~ 290 (365)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 44
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=4.7e-10 Score=103.47 Aligned_cols=168 Identities=17% Similarity=0.058 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
+|....+++..+..++..|. +++|...++..+...|+|+..+...|.++.. .++..+|+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~--------------~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----~nk~~~A~--- 360 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQ--------------YDEALKLLQPLIAAQPDNPYYLELAGDILLE----ANKAKEAI--- 360 (484)
T ss_pred CccchHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH---
Confidence 36778899999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
+.+++++.++|+.+..+.++|.+|.+.|++ .+|+..++..+.-+|+++..|..|+.+|..+|+..+
T Consensus 361 ----e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 361 ----ERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred ----HHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 779999999999999999999999999997 999999999999999999999999999999998776
Q ss_pred hhcCcCCCCCCCcchHHHHHHHHHHHHHhcC-ccHHHHHHHHHhhh
Q 017806 314 RTGGTVNPREVSPNELYSQSAIYIAAAHALK-PSYSVYSSALRLVR 358 (365)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~al~~~~ 358 (365)
+...+ +..+.....|..+..++..+.+.- .+...+.++-.++.
T Consensus 427 a~~A~--AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~ 470 (484)
T COG4783 427 ALLAR--AEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARID 470 (484)
T ss_pred HHHHH--HHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 65432 222222334577777777766543 55555555544443
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.24 E-value=3.8e-10 Score=87.75 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
++.++.+|..+...|+ +++|+..|++++..+|++ ..+++.+|.++.. .|++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~---- 59 (119)
T TIGR02795 2 EEAYYDAALLVLKAGD--------------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAA---- 59 (119)
T ss_pred cHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHH----
Confidence 4678999999999999 999999999999999876 6789999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 235 QATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
..|++++..+|++ +.++..+|.++...|++ ++|+.+|++++...|++..+..
T Consensus 60 ---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 60 ---KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK----------EKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred ---HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh----------HHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888875 68899999999999996 9999999999999999876543
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=9.1e-11 Score=112.46 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=141.3
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE 170 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 170 (365)
.|.++..|..+|.+. ....-+++|.++.+..-..... ..+.+++|.++.++++..++++|.....|+.+|.+..+
T Consensus 453 k~~d~~lyc~LGDv~-~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVL-HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ 531 (777)
T ss_pred CCCcchhHHHhhhhc-cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH
Confidence 466777888888888 3777777887777655433111 13446899999999999999999999999999999999
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
+++ ++.|..+|.+++.++|++..+|+|++.+|.. .|+-.+|. ..+..|++.+-++
T Consensus 532 lek--------------~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~-------~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 532 LEK--------------EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAF-------RKLKEALKCNYQH 586 (777)
T ss_pred Hhh--------------hHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHH-------HHHHHHhhcCCCC
Confidence 999 9999999999999999999999999999999 99999999 7899999999999
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
..+|-|.-.+....|.+ ++|++.|.+.+.+.
T Consensus 587 w~iWENymlvsvdvge~----------eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEF----------EDAIKAYHRLLDLR 617 (777)
T ss_pred CeeeechhhhhhhcccH----------HHHHHHHHHHHHhh
Confidence 99999999999999997 99999999998774
No 102
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.23 E-value=5.6e-10 Score=108.24 Aligned_cols=132 Identities=19% Similarity=0.140 Sum_probs=114.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWAI 214 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 214 (365)
.+++..|+.+|+++++++|+++.+|..++.++.....+. .....+...+....++++.+ +|.++.++.-+|.
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~------~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~ 428 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ------PLDEKQLAALSTELDNIVALPELNVLPRIYEILAV 428 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHH
Confidence 356889999999999999999999999999887754411 12234467888888887775 7788899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.+.. .|++++|. ..+++|+.++| +..+|..+|.++...|+. ++|+..|++|+.++|.+
T Consensus 429 ~~~~----~g~~~~A~-------~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~----------~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 429 QALV----KGKTDEAY-------QAINKAIDLEM-SWLNYVLLGKVYELKGDN----------RLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHh----cCCHHHHH-------HHHHHHHHcCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCC
Confidence 9999 99999999 88999999999 589999999999999997 99999999999999998
Q ss_pred HH
Q 017806 295 HR 296 (365)
Q Consensus 295 ~~ 296 (365)
+.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 74
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=3.4e-10 Score=105.76 Aligned_cols=162 Identities=16% Similarity=0.062 Sum_probs=132.2
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhh---------hhh----hhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGR---------SRQ----RILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~----~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+.+..+..+..|.++. ..|++++|...+++++..+|... ... +....+...+......+|....++
T Consensus 39 ~~~~~e~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (355)
T cd05804 39 RATERERAHVEALSAW-IAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLL 117 (355)
T ss_pred CCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHH
Confidence 3455677888888885 99999999999999999887632 222 333344444443335677778888
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++...|+ +++|+..++++++++|+++.++..+|.++.. .|++++|+ ..++
T Consensus 118 ~~~a~~~~~~G~--------------~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~-------~~l~ 172 (355)
T cd05804 118 GMLAFGLEEAGQ--------------YDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGI-------AFME 172 (355)
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 899999999999 9999999999999999999999999999999 99999999 6788
Q ss_pred HHHhcCCCCH----HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 242 KAVQLNWNSP----QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 242 ~al~~~p~~~----~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
+++...|..+ ..|..+|.++...|++ ++|+..|++++...|
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~~~~~~~~~~~~ 217 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDY----------EAALAIYDTHIAPSA 217 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHhcccc
Confidence 8888776432 3567899999999996 999999999987766
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.23 E-value=4.2e-10 Score=110.97 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
++...|..+|-+++++++..+.+|..||.+|...-+ ...|..||++|.++|+.++.++-..+..|.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D--------------m~RA~kCf~KAFeLDatdaeaaaa~adtya 537 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD--------------MKRAKKCFDKAFELDATDAEAAAASADTYA 537 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Confidence 668899999999999999999999999999999888 999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHH-----------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 218 DRAKMRGRTKEAEEL-----------------------------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~-----------------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
. ..+++.|... +.+|+.+|+.+++.+|++...|..+|.+|...|++
T Consensus 538 e----~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry- 612 (1238)
T KOG1127|consen 538 E----ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY- 612 (1238)
T ss_pred c----cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce-
Confidence 9 9999999876 34589999999999999999999999999999996
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
..|++.|.+|..++|.+..+.+..+.....+|+..++..
T Consensus 613 ---------~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 613 ---------SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ---------ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999998887766543
No 105
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.21 E-value=9.2e-11 Score=82.15 Aligned_cols=68 Identities=32% Similarity=0.508 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWK 234 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g-~~~~A~~~~~ 234 (365)
+++.+|..+|.++...|+ |++|+.+|+++++++|+++.+|+++|.++.. +| ++.+|+
T Consensus 1 e~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~---- 58 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGD--------------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAI---- 58 (69)
T ss_dssp TSHHHHHHHHHHHHHTTH--------------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHH----
T ss_pred CHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHH----
Confidence 367899999999999999 9999999999999999999999999999999 99 799999
Q ss_pred HHHHHHHHHHhcCC
Q 017806 235 QATKNYEKAVQLNW 248 (365)
Q Consensus 235 ~A~~~~~~al~~~p 248 (365)
+.++++++++|
T Consensus 59 ---~~~~~al~l~P 69 (69)
T PF13414_consen 59 ---EDFEKALKLDP 69 (69)
T ss_dssp ---HHHHHHHHHST
T ss_pred ---HHHHHHHHcCc
Confidence 77999998887
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=8e-11 Score=82.44 Aligned_cols=68 Identities=32% Similarity=0.447 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CcchhHHhhhHHHHHHH
Q 017806 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAIS 282 (365)
Q Consensus 204 ~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~A~~ 282 (365)
+++..|+.+|.++.. .|++++|+ ..|+++++++|+++.+|+++|.++..+| ++ ++|+.
T Consensus 1 e~a~~~~~~g~~~~~----~~~~~~A~-------~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ----QGDYEEAI-------EYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHH----TTHHHHHH-------HHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHH
T ss_pred CHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHH
Confidence 367899999999999 99999999 8899999999999999999999999999 65 99999
Q ss_pred HHHHHHHhCC
Q 017806 283 KFRAAIQLQF 292 (365)
Q Consensus 283 ~~~~al~~~p 292 (365)
.|+++++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999998
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.19 E-value=4.9e-10 Score=82.26 Aligned_cols=99 Identities=33% Similarity=0.474 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
+++.+|.++...|+ +++|+..++++++..|.+..++..+|.++.. .|++++|+ ..
T Consensus 2 ~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~ 56 (100)
T cd00189 2 ALLNLGNLYYKLGD--------------YDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEAL-------ED 56 (100)
T ss_pred HHHHHHHHHHHHhc--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHH-------HH
Confidence 57899999999999 9999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
|++++...|.+..++..+|.++...|++ +.|...+.+++..+|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 57 YEKALELDPDNAKAYYNLGLAYYKLGKY----------EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHhH----------HHHHHHHHHHHccCCC
Confidence 9999999999999999999999999996 9999999999988773
No 108
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=7.8e-09 Score=90.74 Aligned_cols=162 Identities=14% Similarity=0.038 Sum_probs=137.6
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCH-----HHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDY-----DALYN 163 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~ 163 (365)
..+++.+|.-|+ ..|-+|.|.+.|...+....- .|-...++++||+..++..++.+... ..+-.
T Consensus 107 ~lAl~qL~~Dym-~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 107 LLALQQLGRDYM-AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 356888899995 999999999999988875432 34455899999999999999988753 33445
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
++..+....+ .+.|+..+.+|++-+|++..+-..+|.++.. .|+|..|+ +.++.+
T Consensus 186 LAq~~~~~~~--------------~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV-------~~~e~v 240 (389)
T COG2956 186 LAQQALASSD--------------VDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAV-------EALERV 240 (389)
T ss_pred HHHHHhhhhh--------------HHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHH-------HHHHHH
Confidence 5555555556 9999999999999999999999999999999 99999999 889999
Q ss_pred HhcCCCC-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 244 VQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 244 l~~~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
++.||.+ +.+...|-.||.++|+. ++.+..+.++++..++...
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~----------~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKP----------AEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHccCCccH
Confidence 9999986 57888999999999997 9999999999999887443
No 109
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.18 E-value=2.7e-09 Score=101.31 Aligned_cols=231 Identities=12% Similarity=-0.006 Sum_probs=161.1
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh--------hhh--hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG--------RSR--QRILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
...|..-+..+ ...+.++-|+..|..+++.+|.. ++. -|..+.-...+++++..-|.....|...+..+
T Consensus 516 ~~tw~~da~~~-~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSC-EKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHH-HhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 34555556666 47777888888888888888761 111 15556666667777777777777777777777
Q ss_pred HHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH--------------
Q 017806 169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-------------- 234 (365)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~-------------- 234 (365)
+..|+ ...|...+.++++.+|++.++|..--.+... ..+++.|..+|.
T Consensus 595 w~agd--------------v~~ar~il~~af~~~pnseeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv~mK 656 (913)
T KOG0495|consen 595 WKAGD--------------VPAARVILDQAFEANPNSEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERVWMK 656 (913)
T ss_pred HhcCC--------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchhhHH
Confidence 77777 7777777777777777776666665555555 555555554432
Q ss_pred ------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 235 ------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 235 ------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.|++.++.+++..|+++..|..+|.++..+++. +.|...|.+.+..-|+.+..|..|+
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i----------e~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI----------EMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH----------HHHHHHHHhccccCCCCchHHHHHH
Confidence 245778888888999999999999999999987 8999999999999999999999998
Q ss_pred HHHHHhhhhhhhhcCcCCCCCCCcch--HHHHHHHHHHHHHhcCccHHHHHHHHHhhh
Q 017806 303 TVLYGLAEDTLRTGGTVNPREVSPNE--LYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (365)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~~~~~~~~al~~~~ 358 (365)
.+-...|+...+..+...+...+|.+ .|-.+...-.+++..+.+.....+||.-++
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888777777777777777764 234444333444444444444555554443
No 110
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=2.1e-09 Score=102.00 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=136.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..++|.+.++..+..|+.+|.+++.+...|..+..+|+ -++|..+.+.++..++.+.-+|--+|.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------------~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------------KEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------------hHHHHHHHHHHhccCcccchhHHHHHH
Confidence 445779999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. ..+|++|+ ++|+.|+.++|++..+|..++.+..+++++ +.....-.+.+++.|++
T Consensus 84 ~~R~----dK~Y~eai-------Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~----------~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 84 LQRS----DKKYDEAI-------KCYRNALKIEKDNLQILRDLSLLQIQMRDY----------EGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHhh----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHhhhhh
Confidence 9999 99999999 889999999999999999999999999996 88888889999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcC
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
...|..++.++.-+|+...+...
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766543
No 111
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.4e-09 Score=95.36 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
.+.+.-+.-++.-|..||++++-|..||.+|..+|+ +..|...|.+|+++.|++++.+..+|.+++
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--------------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--------------ASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 347778888999999999999999999999999999 999999999999999999999999999998
Q ss_pred HHHHhcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 218 DRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 218 ~~~~~~g~--~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
.. .|. ..++. ..+++++..||++..+.+.||..++..|++ .+|+..++..+...|.+.
T Consensus 202 ~~---a~~~~ta~a~-------~ll~~al~~D~~~iral~lLA~~afe~g~~----------~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 202 YQ---AGQQMTAKAR-------ALLRQALALDPANIRALSLLAFAAFEQGDY----------AEAAAAWQMLLDLLPADD 261 (287)
T ss_pred Hh---cCCcccHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcCCCCC
Confidence 72 233 33444 789999999999999999999999999996 999999999999987654
Q ss_pred H
Q 017806 296 R 296 (365)
Q Consensus 296 ~ 296 (365)
.
T Consensus 262 ~ 262 (287)
T COG4235 262 P 262 (287)
T ss_pred c
Confidence 3
No 112
>PRK11906 transcriptional regulator; Provisional
Probab=99.14 E-value=2.9e-09 Score=98.80 Aligned_cols=134 Identities=12% Similarity=-0.003 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 138 RILTFAAKRYANAI---ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 138 ~~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...+.|+.+|.+++ +++|+.+.++..++.|++..-- .+... ......+|.+.-++|++++|.++.++..+|.
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~----~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~ 346 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL----HGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH----hcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45788999999999 9999999999999999987621 11122 3455889999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .++++.|+ ..|++|+.++|+++.+|+..|.++...|+. ++|+..++++++++|.-
T Consensus 347 ~~~~----~~~~~~a~-------~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~----------~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 347 ITGL----SGQAKVSH-------ILFEQAKIHSTDIASLYYYRALVHFHNEKI----------EEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHh----hcchhhHH-------HHHHHHhhcCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhccCchh
Confidence 9999 99999999 889999999999999999999999999997 99999999999999976
Q ss_pred HHH
Q 017806 295 HRA 297 (365)
Q Consensus 295 ~~~ 297 (365)
..+
T Consensus 406 ~~~ 408 (458)
T PRK11906 406 RKA 408 (458)
T ss_pred hHH
Confidence 544
No 113
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.6e-09 Score=98.18 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=105.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPE---------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
.+++.|+|..|+..|++++..-.. -..++.|++.|+..+++ |.+|+.++.+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~--------------~~~Ai~~c~k 282 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE--------------YKEAIESCNK 282 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh--------------HHHHHHHHHH
Confidence 455666666666666666654321 13478999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 198 al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
+|+++|+|..++|..|.++.. +|+|+.|+ ..|+++++++|.+..+...+..+-.+..++ .
T Consensus 283 vLe~~~~N~KALyRrG~A~l~----~~e~~~A~-------~df~ka~k~~P~Nka~~~el~~l~~k~~~~---------~ 342 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLA----LGEYDLAR-------DDFQKALKLEPSNKAARAELIKLKQKIREY---------E 342 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHh----hccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH---------H
Confidence 999999999999999999999 99999999 889999999999999999999998888776 4
Q ss_pred HHHHHHHHHHHHhCC
Q 017806 278 RTAISKFRAAIQLQF 292 (365)
Q Consensus 278 ~~A~~~~~~al~~~p 292 (365)
+...+.|...+..-+
T Consensus 343 ~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 343 EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccc
Confidence 666788888776543
No 114
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.12 E-value=3.9e-09 Score=85.53 Aligned_cols=136 Identities=16% Similarity=0.058 Sum_probs=113.7
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALL 188 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~ 188 (365)
+..+..+|-..|..++... ..++...+...+++.+..+|+. ..+.+.+|.++...|+ +
T Consensus 4 q~~~~~~a~~~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--------------~ 64 (145)
T PF09976_consen 4 QQQQAEQASALYEQALQAL-----QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--------------Y 64 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--------------H
Confidence 4556677888888776643 3567888888999999999998 6678889999999999 9
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 189 EEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 189 ~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
++|+..|++++...|+. ..+...|+.++.. .|++++|+ ..++. +...+-.+.++..+|.+|...|
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----~~~~d~Al-------~~L~~-~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQ----QGQYDEAL-------ATLQQ-IPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence 99999999999988664 4688999999999 99999999 55654 3334456788999999999999
Q ss_pred CcchhHHhhhHHHHHHHHHHHHH
Q 017806 266 AIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al 288 (365)
++ ++|+..|++||
T Consensus 133 ~~----------~~A~~~y~~Al 145 (145)
T PF09976_consen 133 DY----------DEARAAYQKAL 145 (145)
T ss_pred CH----------HHHHHHHHHhC
Confidence 96 99999999985
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.08 E-value=2.3e-09 Score=83.31 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=85.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHH
Q 017806 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 208 (365)
..+|++++|+..|.+++..+|++ ..+++.+|.++...|+ +++|+..|++++..+|++ +.+
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--------------YADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHHCCCCCcccHH
Confidence 45678888999999999988876 5789999999999999 999999999999998885 678
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
+..+|.++.. .|++++|+ ..++++++..|++..+..
T Consensus 79 ~~~~~~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 79 LLKLGMSLQE----LGDKEKAK-------ATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHH----hCChHHHH-------HHHHHHHHHCcCChhHHH
Confidence 9999999999 99999999 779999999998876543
No 116
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.1e-09 Score=90.92 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
..+.-+.-++.-+..+|+|.+-|..||.+|.. +|++..|. ..|++|+++.|++++++..+|.+++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~-------~AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDAL-------LAYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 37788889999999999999999999999999 99999999 88999999999999999999999998776
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
- .+-.++...|++++.++|++..+.+.||..++..|+..++..
T Consensus 206 ~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 206 Q-------QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred C-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 3 234799999999999999999999999999999996654333
No 117
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=4.3e-08 Score=94.74 Aligned_cols=90 Identities=12% Similarity=0.000 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.+++.++..|.. .|++++|+ .+++++|...|+.++.|+..|.+|.+.|++ .+|..+++.
T Consensus 195 w~~~~lAqhyd~----~g~~~~Al-------~~Id~aI~htPt~~ely~~KarilKh~G~~----------~~Aa~~~~~ 253 (517)
T PF12569_consen 195 WTLYFLAQHYDY----LGDYEKAL-------EYIDKAIEHTPTLVELYMTKARILKHAGDL----------KEAAEAMDE 253 (517)
T ss_pred HHHHHHHHHHHH----hCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHH
Confidence 456888999999 99999999 789999999999999999999999999997 999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 287 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 287 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
|-.+|+.|-.+....+..+++.|+.+++...
T Consensus 254 Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 254 ARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998888889999999988777544
No 118
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=3.9e-08 Score=86.48 Aligned_cols=163 Identities=15% Similarity=0.071 Sum_probs=118.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDA---LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 208 (365)
+..|++++|+..|++++...|....+ .+++|.+++..++ +++|+..|++.++..|++ +.+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~--------------y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCcCCCchHHH
Confidence 44688999999999999999988655 4899999999999 999999999999999875 567
Q ss_pred HHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchh----
Q 017806 209 FYNWAIAISDRAKMRGR-----------TKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPA---- 270 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~-----------~~~A~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~---- 270 (365)
++.+|.++.. .++ .+.-...-..|+..|++.++..|++. ++...+..+..++.+.+-.
T Consensus 109 ~Y~~g~~~~~----~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 109 LYMRGLTNMA----LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred HHHHHHhhhh----cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988655 431 11111122345588999999999863 3333333332222222100
Q ss_pred HHhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhhhhhhh
Q 017806 271 REKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~a~ 315 (365)
..+.|.|..|+.-|+.+++..|+. .++++.++.+|..+|...++.
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 114455699999999999998765 578999999999999776443
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.04 E-value=8e-09 Score=104.34 Aligned_cols=201 Identities=11% Similarity=0.014 Sum_probs=135.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC----CchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST----SPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
...+++++|++.++.+++.+|+...+++.+|.++.+.+++..+... ......++ .+++++...+...+++-.+++
T Consensus 42 ~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~ 120 (906)
T PRK14720 42 KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALR 120 (906)
T ss_pred HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHH
Confidence 3568999999999999999999999999999999998884444111 11122344 666777766666777779999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH----------hhhHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE----------KQTIVRTA 280 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~----------~~~~~~~A 280 (365)
.||.||.+ +|++++|. ..|+++++++|+++.+++++|..|... +++.|.. ....|..+
T Consensus 121 ~LA~~Ydk----~g~~~ka~-------~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 121 TLAEAYAK----LNENKKLK-------GVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGI 188 (906)
T ss_pred HHHHHHHH----cCChHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHH
Confidence 99999999 99999999 889999999999999999999999999 8733333 22344444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHH-HHHHHhhhhhhhhcCc-CCCCCCCcchHHHHHHHHHHHHHhcCccHHH
Q 017806 281 ISKFRAAIQLQFDFHRAIYNLG-TVLYGLAEDTLRTGGT-VNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 281 ~~~~~~al~~~p~~~~~~~~lg-~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 349 (365)
..++.+.+..+|++...+..+- .+....| ........ .....+...+.|.....++..+..+++.+.-
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 4444444444555544433221 1212212 00000000 0011123334577788888888888887543
No 120
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=8.8e-10 Score=80.39 Aligned_cols=79 Identities=27% Similarity=0.299 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+|+++.|+..|+++++.+|. +...++.+|.+++..|+ |++|+..+++ +..++.+...++.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------------y~~A~~~~~~-~~~~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------------YEEAIELLQK-LKLDPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------------HHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------------HHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence 47899999999999999995 56778889999999999 9999999999 8889999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~ 234 (365)
++.. +|++++|++.++
T Consensus 67 ~~~~----l~~y~eAi~~l~ 82 (84)
T PF12895_consen 67 CLLK----LGKYEEAIKALE 82 (84)
T ss_dssp HHHH----TT-HHHHHHHHH
T ss_pred HHHH----hCCHHHHHHHHh
Confidence 9999 999999995543
No 121
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.01 E-value=4.5e-09 Score=94.95 Aligned_cols=200 Identities=15% Similarity=0.077 Sum_probs=132.2
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCC------C
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNP------E 156 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p------~ 156 (365)
..+|..+|+.|+ .+++|++|+++...=+.+... .+-..|.|++|+-++.+-|.+.. .
T Consensus 55 SAIYsQLGNAyf-yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~ 133 (639)
T KOG1130|consen 55 SAIYSQLGNAYF-YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL 133 (639)
T ss_pred HHHHHHhcchhh-hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh
Confidence 467899999996 999999999998765544311 23334899999999888766532 3
Q ss_pred CHHHHHHHHHHHHHhcCcccc----------------------------------------------CCCCchhhhHHHH
Q 017806 157 DYDALYNWALVLQESADNVSL----------------------------------------------DSTSPSKDALLEE 190 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a----------------------------------------------~~~~~~~~~~~~~ 190 (365)
...+++++|.+|...|+-.+. .+..+--+|+|+.
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 467899999999998874333 3333333455666
Q ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 017806 191 ACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQ 262 (365)
Q Consensus 191 A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~ 262 (365)
||.+-+.-+.+... .-.++.|||.++.- +|+++.|++.|..+ +.-|+++... .+..-+.||..|.
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe~A~ehYK~t---l~LAielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFELAIEHYKLT---LNLAIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccHhHHHHHHHH---HHHHHHhcchhHHHHHHHHhhhHHH
Confidence 66555555554322 12456666666666 66666666544443 2223344333 3556678888888
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
-+.++ ++||.++.+-+.+. -....+.+.||.++..+|...++..
T Consensus 287 ll~e~----------~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 287 LLKEV----------QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 88885 99999999877663 2346678888888888887665543
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.01 E-value=1.7e-09 Score=74.70 Aligned_cols=65 Identities=29% Similarity=0.472 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+.+|..+...|+ +++|+.+|+++++.+|+++.+|+.+|.++.. +|++++|+ ..|+
T Consensus 1 ~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~ 55 (65)
T PF13432_consen 1 YALARALYQQGD--------------YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEAL-------AYYE 55 (65)
T ss_dssp HHHHHHHHHCTH--------------HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHH-------HHHH
T ss_pred ChHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 467889999999 9999999999999999999999999999999 99999999 7799
Q ss_pred HHHhcCCCCH
Q 017806 242 KAVQLNWNSP 251 (365)
Q Consensus 242 ~al~~~p~~~ 251 (365)
++++.+|+++
T Consensus 56 ~a~~~~P~~p 65 (65)
T PF13432_consen 56 RALELDPDNP 65 (65)
T ss_dssp HHHHHSTT-H
T ss_pred HHHHHCcCCC
Confidence 9999999875
No 123
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.00 E-value=1.7e-09 Score=74.63 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
+.+|..+.. .|++++|+ ..|+++++.+|+++.+|+.+|.++..+|++ ++|+..|+++++
T Consensus 1 ~~~a~~~~~----~g~~~~A~-------~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAI-------AAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHH----CTHHHHHH-------HHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred ChHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 467889999 99999999 889999999999999999999999999996 999999999999
Q ss_pred hCCCCH
Q 017806 290 LQFDFH 295 (365)
Q Consensus 290 ~~p~~~ 295 (365)
.+|+++
T Consensus 60 ~~P~~p 65 (65)
T PF13432_consen 60 LDPDNP 65 (65)
T ss_dssp HSTT-H
T ss_pred HCcCCC
Confidence 999975
No 124
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.3e-08 Score=92.38 Aligned_cols=119 Identities=24% Similarity=0.185 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHhc
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~ 223 (365)
......|+.+++.|+ |..|+..|++++..-.. -..++.||+.++.+ +
T Consensus 209 ~~~ke~Gn~~fK~gk--------------~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK----l 270 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGK--------------FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK----L 270 (397)
T ss_pred HHHHHhhhHHHhhch--------------HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh----h
Confidence 345678889999999 99999999999876331 13579999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
++|.+|+ .++.++|.++|++..++++.|.++..+|++ +.|+..|+++++++|+|-.+...|..
T Consensus 271 ~~~~~Ai-------~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 271 KEYKEAI-------ESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred hhHHHHH-------HHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999999 889999999999999999999999999996 99999999999999999999988888
Q ss_pred HHHHhhhhh
Q 017806 304 VLYGLAEDT 312 (365)
Q Consensus 304 ~~~~~g~~~ 312 (365)
+-.+..+..
T Consensus 334 l~~k~~~~~ 342 (397)
T KOG0543|consen 334 LKQKIREYE 342 (397)
T ss_pred HHHHHHHHH
Confidence 877766443
No 125
>PRK15331 chaperone protein SicA; Provisional
Probab=98.99 E-value=1.1e-08 Score=82.28 Aligned_cols=110 Identities=15% Similarity=0.002 Sum_probs=99.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
+.++.-+..+..|.-++..|+ +++|...|+-....+|.+++.|..||.++.. +++|++|+
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk--------------~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~Ai-- 91 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGR--------------LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQKAC-- 91 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHHH--
Confidence 445556778899999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (365)
..|..+..++++++...+..|.||..+|+. +.|+.+|+.++. .|.+....
T Consensus 92 -----~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~----------~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 92 -----DLYAVAFTLLKNDYRPVFFTGQCQLLMRKA----------AKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred -----HHHHHHHHcccCCCCccchHHHHHHHhCCH----------HHHHHHHHHHHh-CcchHHHH
Confidence 779999999999999999999999999997 999999999998 56655443
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.99 E-value=7.4e-08 Score=82.63 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=111.2
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHH
Q 017806 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 208 (365)
+..|++.+|+..|++++...|.. ..+++.+|.+++..|+ ++.|+..|++.+...|++ ..+
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--------------y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--------------YEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCcchhhH
Confidence 55688999999999999988764 6789999999999999 999999999999999985 468
Q ss_pred HHHHHHHHHHHHHhcCC-H---HHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCcchh----HHhhhHH
Q 017806 209 FYNWAIAISDRAKMRGR-T---KEAEELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPA----REKQTIV 277 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~-~---~~A~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~~----~~~~~~~ 277 (365)
++.+|.++.. ... . +.-.....+|+..|+..+...|++.. +-..+..+-..+.+.+-. ..+.|.|
T Consensus 82 ~Y~~g~~~~~----~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 82 LYMLGLSYYK----QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH----HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHH----hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999877 321 1 22233455667889999999998743 222222222222211000 1144557
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhhhh
Q 017806 278 RTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 278 ~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~ 312 (365)
..|+..|+.+++..|+.. .++..++.++..+|...
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 999999999999999874 57888999999999665
No 127
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=3.2e-08 Score=95.62 Aligned_cols=226 Identities=17% Similarity=0.145 Sum_probs=150.9
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
+.+.+.....++ ...|++++|++++........+ .+...|++++|...|...|..||++...+..+..+
T Consensus 3 ~SE~lLY~~~il-~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 3 HSELLLYKNSIL-EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 345666667778 5899999999999876555433 45666999999999999999999999988888888
Q ss_pred HHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHhcCC----------
Q 017806 168 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH------------DAFYNWAIAISDRAKMRGR---------- 225 (365)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~~~~~g~---------- 225 (365)
...... ...+..+.-...|++..+..|... +-+..+...|....-+.|=
T Consensus 82 ~g~~~~---------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~L 152 (517)
T PF12569_consen 82 LGLQLQ---------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPL 152 (517)
T ss_pred Hhhhcc---------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 744431 001127788888988877776532 2222223333221111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcC------------CCC--HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 226 ---TKEAEELWKQATKNYEKAVQLN------------WNS--PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 226 ---~~~A~~~~~~A~~~~~~al~~~------------p~~--~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
...+ .....-+..|...++.. |.. .++++.++..|...|++ ++|+.+.++||
T Consensus 153 y~d~~K~-~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~----------~~Al~~Id~aI 221 (517)
T PF12569_consen 153 YKDPEKA-AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY----------EKALEYIDKAI 221 (517)
T ss_pred HcChhHH-HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHH
Confidence 0000 01111223333333211 112 35668889999999996 99999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHH--HHHHHHHHHHHhcC
Q 017806 289 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELY--SQSAIYIAAAHALK 344 (365)
Q Consensus 289 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~a~~~~~~a~~~~ 344 (365)
+..|+.++.+...|.++...|+..+|......+..++..+.| ..+..|+-+++.++
T Consensus 222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999998888777677777777655 44555555554443
No 128
>PRK11906 transcriptional regulator; Provisional
Probab=98.97 E-value=2.3e-08 Score=92.97 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=122.8
Q ss_pred HhcCCChhH--hhhcHHHHHHHHHHhh---ccChh------------------hhh-hhhhHHHHHHHHHHHHHhCCCCH
Q 017806 103 FSQGNTPHQ--LAEQNNAAMELINSVT---GVDEE------------------GRS-RQRILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 103 ~~~g~~~~~--~~g~~~~A~~~~~~al---~~~~~------------------~~~-~~~~~~~A~~~~~~al~~~p~~~ 158 (365)
+.+|...+. .......|..+|.+++ .++|. ++. ...+..+|..+..++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 556654420 2234788999999999 88866 111 24678899999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.++..+|.++...++ ++.|+..|++|+.++|+.+.+|+..|.++.. .|+.++|+ .
T Consensus 339 ~a~~~~g~~~~~~~~--------------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~-------~ 393 (458)
T PRK11906 339 KILAIMGLITGLSGQ--------------AKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEAR-------I 393 (458)
T ss_pred HHHHHHHHHHHhhcc--------------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHH-------H
Confidence 999999999999999 9999999999999999999999999999999 99999999 8
Q ss_pred HHHHHHhcCCCCHHH-HHHHHH-HHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 239 NYEKAVQLNWNSPQA-LNNWGL-ALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 239 ~~~~al~~~p~~~~~-~~~lg~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
.++++++++|.-..+ ...+.. .|...+- +.|+++|-+--+
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 435 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPL-----------KNNIKLYYKETE 435 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCch-----------hhhHHHHhhccc
Confidence 899999999986543 334444 5555554 899998876443
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.97 E-value=9.9e-09 Score=75.15 Aligned_cols=89 Identities=33% Similarity=0.446 Sum_probs=81.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+|++++.+.|.+..++..+|.
T Consensus 11 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------------YEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 456789999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
++.. .|+++.|. ..+.++++.+|
T Consensus 77 ~~~~----~~~~~~a~-------~~~~~~~~~~~ 99 (100)
T cd00189 77 AYYK----LGKYEEAL-------EAYEKALELDP 99 (100)
T ss_pred HHHH----HHhHHHHH-------HHHHHHHccCC
Confidence 9999 99999999 66888777766
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.95 E-value=2.2e-09 Score=78.23 Aligned_cols=80 Identities=26% Similarity=0.295 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
|+|+.|+..|+++++.+|. +...++.+|.++.. .|++++|+ ..+++ ++.++.++...+.+|.++..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~-------~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAI-------ELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHH-------HHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHH-------HHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999995 56788889999999 99999999 66877 88888889999999999999
Q ss_pred hcCcchhHHhhhHHHHHHHHHHHH
Q 017806 264 LSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
+|++ ++|+..|+++
T Consensus 71 l~~y----------~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKY----------EEAIKALEKA 84 (84)
T ss_dssp TT-H----------HHHHHHHHHH
T ss_pred hCCH----------HHHHHHHhcC
Confidence 9996 9999999875
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=3e-08 Score=87.90 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHH-HHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 157 DYDALYNWALVL-QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 157 ~~~~~~~lg~~~-~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
+...++..|..+ ...|+ |++|+..|++.+...|++ +.+++.+|.+|+. .|++++|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~--------------y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~-- 200 (263)
T PRK10803 141 DANTDYNAAIALVQDKSR--------------QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAA-- 200 (263)
T ss_pred CHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHH--
Confidence 356778888876 55688 999999999999999997 5899999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 233 WKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
..|++++...|+ .+++++.+|.++..+|+. ++|+..|++++...|+...+
T Consensus 201 -----~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~----------~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 201 -----YYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT----------AKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -----HHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHH
Confidence 778888887776 588999999999999996 99999999999999998754
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.93 E-value=6e-08 Score=94.22 Aligned_cols=139 Identities=19% Similarity=0.110 Sum_probs=105.2
Q ss_pred CCCCHHHH--HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHH-H
Q 017806 154 NPEDYDAL--YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA-E 230 (365)
Q Consensus 154 ~p~~~~~~--~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A-~ 230 (365)
-|.+..+| +..|.-+...++ .+.+..|+.+|++|++++|+++.++..++.++.. ...+... .
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~-----------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~----~~~~~~~~~ 397 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGD-----------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIV----RHSQQPLDE 397 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHhcCCccH
Confidence 46666664 455655554433 2348899999999999999999999999998866 4333211 1
Q ss_pred HHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 231 ELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
..+..+....++++.+ +|..+.++.-+|..+...|++ ++|...|++|+.++| ++.+|..+|.++...
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~ 466 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEM-SWLNYVLLGKVYELK 466 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 1234445667776664 788889999999999999996 999999999999999 589999999999999
Q ss_pred hhhhhhhcCc
Q 017806 309 AEDTLRTGGT 318 (365)
Q Consensus 309 g~~~~a~~~~ 318 (365)
|+..++...+
T Consensus 467 G~~~eA~~~~ 476 (517)
T PRK10153 467 GDNRLAADAY 476 (517)
T ss_pred CCHHHHHHHH
Confidence 9876444433
No 133
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.90 E-value=2.4e-08 Score=101.76 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
|++++|.+.+...++.. +.+..++..+...|.+.|+ +++|...|++..+ .+...|+.+...|
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--------------~~~A~~vf~~m~~---~d~~t~n~lI~~y 401 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR--------------MEDARNVFDRMPR---KNLISWNALIAGY 401 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC--------------HHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence 44444444444444433 2233344444444444444 7777777766543 2455677777777
Q ss_pred HHHHHhcCCHHHHHHHHHH----------------------------HHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcC
Q 017806 217 SDRAKMRGRTKEAEELWKQ----------------------------ATKNYEKAVQLNW--NSPQALNNWGLALQELSA 266 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~----------------------------A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~ 266 (365)
.+ .|+.++|+++|++ |.+.|+...+..+ -+...|..+...|.+.|+
T Consensus 402 ~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 402 GN----HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 77 7777777766554 3455555543221 134567777777777777
Q ss_pred cchhHH----------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 267 IVPARE----------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 267 ~~~~~~----------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+++|.. ..|+++.|...+++.+++.|++...|..|..+|...|+.+++...
T Consensus 478 ~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 478 LDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 766554 446678888888888888898888888889999988887766543
No 134
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=2.5e-08 Score=81.90 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
-+..-|+-++..|+ |++|...|..||.+.|.. .-+|.|.|.++.+ ++.++.|+
T Consensus 97 ~lK~EGN~~F~ngd--------------yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI---- 154 (271)
T KOG4234|consen 97 SLKKEGNELFKNGD--------------YEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAI---- 154 (271)
T ss_pred HHHHHHHHhhhccc--------------HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHH----
Confidence 34556788888888 999999999999999974 4578999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
..+.++|+++|.+-.++..++.+|.++..+ ++|+..|++.++.+|....+......
T Consensus 155 ---~dcsKaiel~pty~kAl~RRAeayek~ek~----------eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 155 ---EDCSKAIELNPTYEKALERRAEAYEKMEKY----------EEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred ---HHHHhhHhcCchhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 889999999999999999999999999885 99999999999999998766554443
No 135
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=7.5e-09 Score=93.29 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=132.6
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
.++......|.++. ..|++++|+..+.+.-.+... .+...++++.|.+.++..-+.+.+..-.....+++....
T Consensus 100 ~~~~~~~~~A~i~~-~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 100 SNEIVQLLAATILF-HEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT 178 (290)
T ss_dssp CHHHHHHHHHHHHC-CCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 44555666677774 889999999999887333322 466779999999999999988888776666667777776
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
|. +.+.+|.-.|++..+..+.++..++.++.++.. +|+|++|. ..+..++..+|+++
T Consensus 179 g~------------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe-------~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 179 GG------------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAE-------ELLEEALEKDPNDP 235 (290)
T ss_dssp TT------------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHH-------HHHHHHCCC-CCHH
T ss_pred Cc------------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhccCCH
Confidence 64 238999999999988888899999999999999 99999999 67888999999999
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
+++.|+..+...+|+. .+.+.+++.+....+|+++..
T Consensus 236 d~LaNliv~~~~~gk~---------~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKP---------TEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-T---------CHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999985 245667888878889998765
No 136
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.87 E-value=7e-09 Score=91.69 Aligned_cols=103 Identities=19% Similarity=0.135 Sum_probs=84.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
++.++.+|.|++||+||.+++..+|.++..+.+++.+|+.+.+ |..|...+..|+.++.....+|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~--------------FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS--------------FAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH--------------HHHHHHhHHHHHHhhHHHHHHHH
Confidence 3356778888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
.+|.+-.. +|...+|. +.++.+|++.|++-+..-.++
T Consensus 170 RR~~AR~~----Lg~~~EAK-------kD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 170 RRMQARES----LGNNMEAK-------KDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHHHHH----HhhHHHHH-------HhHHHHHhhCcccHHHHHHHH
Confidence 88888888 88888888 778888888888655444333
No 137
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4.2e-07 Score=85.87 Aligned_cols=172 Identities=18% Similarity=0.067 Sum_probs=140.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh---------hhhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE---------EGRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
+...|++..++.-.-.++. +.++|++|+.+.+.-....- -|.++.+..++|+.+++ -.++.+..++.
T Consensus 39 l~~~pdd~~a~~cKvValI-q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~ 114 (652)
T KOG2376|consen 39 LSIVPDDEDAIRCKVVALI-QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE 114 (652)
T ss_pred HhcCCCcHhhHhhhHhhhh-hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence 5677999999998888885 99999999976665443221 16678899999999998 55677777889
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------------------------------CCC-CHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------------------------------CPT-LHDAFYN 211 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------------------------------~p~-~~~~~~~ 211 (365)
..|.+++++|+ |++|...|+..++- .|. ..+.+||
T Consensus 115 L~AQvlYrl~~--------------ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN 180 (652)
T KOG2376|consen 115 LRAQVLYRLER--------------YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYN 180 (652)
T ss_pred HHHHHHHHHhh--------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHH
Confidence 99999999999 99999999988542 222 5678899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--------PQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
.+.++.. .|+|.+|++.+++|++.+++.+..+..+ ..+...++.++..+|+. ++|.+.
T Consensus 181 ~Ac~~i~----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt----------~ea~~i 246 (652)
T KOG2376|consen 181 TACILIE----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT----------AEASSI 246 (652)
T ss_pred HHHHHHh----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch----------HHHHHH
Confidence 9999999 9999999999999999999888766544 23666788999999997 999999
Q ss_pred HHHHHHhCCCCH
Q 017806 284 FRAAIQLQFDFH 295 (365)
Q Consensus 284 ~~~al~~~p~~~ 295 (365)
|...+..+|-+.
T Consensus 247 y~~~i~~~~~D~ 258 (652)
T KOG2376|consen 247 YVDIIKRNPADE 258 (652)
T ss_pred HHHHHHhcCCCc
Confidence 999999988765
No 138
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.86 E-value=4e-08 Score=88.91 Aligned_cols=186 Identities=15% Similarity=0.039 Sum_probs=138.5
Q ss_pred CCchHHHHhcCCChhHhhhc--------------------HHHHHHHHHHhhccChh----------------hhhhhhh
Q 017806 96 DSVTDASFSQGNTPHQLAEQ--------------------NNAAMELINSVTGVDEE----------------GRSRQRI 139 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~--------------------~~~A~~~~~~al~~~~~----------------~~~~~~~ 139 (365)
-....++|++|++|+ ..|+ +..|+++|..-+.+... .++..|+
T Consensus 132 v~e~RAlYNlgnvYh-akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGd 210 (639)
T KOG1130|consen 132 VLESRALYNLGNVYH-AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGD 210 (639)
T ss_pred HhhhHHHhhhhhhhh-hcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeecc
Confidence 345688999999995 6655 45566666655554422 3667799
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC----CC--CHH
Q 017806 140 LTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC----PT--LHD 207 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~----p~--~~~ 207 (365)
|+.|+.+-+.-|.+.... -.++.++|+++.-+|+ ++.|+++|++.+.+. .. .+.
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~--------------fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN--------------FELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc--------------cHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 999999988887775332 4578999999999999 999999999987652 22 456
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
..+.||..|.- ...+..||.++.+=+.+-+. +..--....+++.||.++..+|.. ++|+.+.++.
T Consensus 277 scYSLgNtytl----l~e~~kAI~Yh~rHLaIAqe-L~DriGe~RacwSLgna~~alg~h----------~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTL----LKEVQKAITYHQRHLAIAQE-LEDRIGELRACWSLGNAFNALGEH----------RKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhhhH----------HHHHHHHHHH
Confidence 78899999998 89999999776665444333 222234577888999999999996 8998888888
Q ss_pred HHh-----CCC-CHHHHHHHHHHHHHhhhh
Q 017806 288 IQL-----QFD-FHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 288 l~~-----~p~-~~~~~~~lg~~~~~~g~~ 311 (365)
+++ ++. -..+..||......+|..
T Consensus 342 l~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 342 LRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 766 232 346788888888888853
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.86 E-value=6.8e-08 Score=85.67 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFY 210 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 210 (365)
.|+|++|+..|+..++.+|++ +.+++++|.+|+..|+ +++|+..|++++...|+ .+++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~--------------~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK--------------KDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 478999999999999999998 5899999999999999 99999999999999887 588999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
.+|.++.. +|++++|+ ..|+++++..|++..+
T Consensus 222 klg~~~~~----~g~~~~A~-------~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQD----KGDTAKAK-------AVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHH----cCCHHHHH-------HHHHHHHHHCcCCHHH
Confidence 99999999 99999999 7799999999987654
No 140
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.86 E-value=1.2e-08 Score=90.17 Aligned_cols=110 Identities=18% Similarity=0.102 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
....|+.|+.+|. |++||.||.+++..+|.|+-.+.|++.+|.+ +.+|..|. ..+
T Consensus 100 iKE~GN~yFKQgK--------------y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE-------~DC 154 (536)
T KOG4648|consen 100 IKERGNTYFKQGK--------------YEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAE-------EDC 154 (536)
T ss_pred HHHhhhhhhhccc--------------hhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHH-------HhH
Confidence 4567888888888 9999999999999999999999999999999 99999999 778
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
..|+.+|..+..+|..+|.+...+|.. .+|.+.|+.+|++.|++.+....++.+-
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~----------~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNN----------MEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhH----------HHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 999999999999999999999999997 9999999999999999876655554443
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=6.4e-08 Score=87.30 Aligned_cols=173 Identities=13% Similarity=0.011 Sum_probs=126.0
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..+...++..+ ...++.+.++.-+...+..... .+...|++++|++.+.+. ++.++....-.
T Consensus 66 l~av~~la~y~-~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vq 139 (290)
T PF04733_consen 66 LQAVRLLAEYL-SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQ 139 (290)
T ss_dssp CHHHHHHHHHH-CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHH
Confidence 34444444433 2334455666665554433311 233458888888887654 56788888889
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHH
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG--RTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g--~~~~A~~~~~~A~~~~~~al 244 (365)
++..+++ ++.|...++.+.+.+.+..-.....+.+... .| ++.+|. ..|+...
T Consensus 140 i~L~~~R--------------~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~----~g~e~~~~A~-------y~f~El~ 194 (290)
T PF04733_consen 140 ILLKMNR--------------PDLAEKELKNMQQIDEDSILTQLAEAWVNLA----TGGEKYQDAF-------YIFEELS 194 (290)
T ss_dssp HHHHTT---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH----HTTTCCCHHH-------HHHHHHH
T ss_pred HHHHcCC--------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH----hCchhHHHHH-------HHHHHHH
Confidence 9999999 9999999999998887766555555555555 55 588888 7788877
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
+..+.++..++.++.++..+|++ ++|.+.+++++..+|+++.++.|+..+...+|+..
T Consensus 195 ~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 195 DKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp CCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred hccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 77778899999999999999996 99999999999999999999999999999999764
No 142
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=1.5e-06 Score=78.70 Aligned_cols=190 Identities=15% Similarity=0.092 Sum_probs=138.2
Q ss_pred CchHHHHhcC-CChhHhhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 97 SVTDASFSQG-NTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 97 ~~~~a~~~~g-~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
+.+...+..| ... .++|+++.+=.+..++.+..++ ....+|+++.|.....++++..|.++.++...
T Consensus 115 e~p~l~~l~aA~AA-~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 115 EQPVLAYLLAAEAA-QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred cchHHHHHHHHHHH-HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 3344444444 445 6999999999999999999433 23445999999999999999999999999999
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------------------------C--------------C---
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------------------------C--------------P--- 203 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------------------------~--------------p--- 203 (365)
-.+|...|+ |.+......+.-+- + |
T Consensus 194 ~r~y~~~g~--------------~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l 259 (400)
T COG3071 194 LRAYIRLGA--------------WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL 259 (400)
T ss_pred HHHHHHhcc--------------HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh
Confidence 999999999 44444333332211 1 1
Q ss_pred -CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------HHHHHHHHhcCCCCHHHHHHHH
Q 017806 204 -TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA------------------------TKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 204 -~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A------------------------~~~~~~al~~~p~~~~~~~~lg 258 (365)
+++.+...++.-+.. .|++++|.+....+ ++..++.++..|+++..+.-||
T Consensus 260 r~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 260 RNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred hcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 123444445555555 99999998775442 5667777778888888888888
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
..+.+.+.+ .+|..+|+.|+...|+ ...+..+|.++.++|+...+..
T Consensus 336 ~L~~k~~~w----------~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 336 RLALKNKLW----------GKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHhhHH----------HHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 888888885 8888888888888775 6667788888888887664443
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.83 E-value=4.1e-07 Score=80.03 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=120.2
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCC---HHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPED---YDAL 161 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 161 (365)
.+..++..|..++ ..|++++|+..|++.+...|. +++..+++++|+..|++.++.+|++ ..++
T Consensus 31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4566778888885 899999999999999999986 3567799999999999999999876 5678
Q ss_pred HHHHHHHHHhcCc----cccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHH--------------HHHHHHHHHHH
Q 017806 162 YNWALVLQESADN----VSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAF--------------YNWAIAISDRA 220 (365)
Q Consensus 162 ~~lg~~~~~~~~~----~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~--------------~~lg~~~~~~~ 220 (365)
+.+|.++..+++. ...............+|+..|++.++..|+.. ++. ...|..|.+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~-- 187 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK-- 187 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999887665520 00011122233446789999999999999853 222 234555555
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCc
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAI 267 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~ 267 (365)
.|.|..|+ ..++.+++.-|+. .+++..++.+|..+|..
T Consensus 188 --~~~y~AA~-------~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 188 --RGAYVAVV-------NRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --cCchHHHH-------HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 78877777 7788888877764 67999999999999996
No 144
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.82 E-value=1.3e-07 Score=73.20 Aligned_cols=96 Identities=24% Similarity=0.168 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+++++|.++-.+|+ .++|+.+|++++...... ..++..+|..+.. +|++++|+
T Consensus 2 ~~~~~~A~a~d~~G~--------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~----- 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGR--------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEAL----- 58 (120)
T ss_pred chHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHH-----
Confidence 578999999999999 999999999999975543 6789999999999 99999999
Q ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 236 ATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 236 A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
..+++++...|+ +..+...++.++...|+. ++|++.+-.++.
T Consensus 59 --~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~----------~eAl~~~l~~la 103 (120)
T PF12688_consen 59 --ALLEEALEEFPDDELNAALRVFLALALYNLGRP----------KEALEWLLEALA 103 (120)
T ss_pred --HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHH
Confidence 668888888788 888899999999999997 999999888775
No 145
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=2.7e-07 Score=76.88 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
..-|.-.|.+++.+.|.-+++++.+|.-+...|+ |+.|.+.|...+++||.+.-++.|+|..++.
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--------------fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY- 145 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAHLNRGIALYY- 145 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--------------chHHHHHhhhHhccCCcchHHHhccceeeee-
Confidence 6667788889999999999999999999999999 9999999999999999999999999999998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
-|++.-|. ..+.+-.+.||++|
T Consensus 146 ---~gR~~LAq-------~d~~~fYQ~D~~DP 167 (297)
T COG4785 146 ---GGRYKLAQ-------DDLLAFYQDDPNDP 167 (297)
T ss_pred ---cCchHhhH-------HHHHHHHhcCCCCh
Confidence 99999998 55666666666665
No 146
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.79 E-value=1.2e-06 Score=91.84 Aligned_cols=191 Identities=9% Similarity=-0.029 Sum_probs=124.4
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccC--hh---------hhhhhhhHHHHHHHHHHHHHh----CCCCHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVD--EE---------GRSRQRILTFAAKRYANAIER----NPEDYDALY 162 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--~~---------~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 162 (365)
+...|..+-..| ...|++++|+.+|....... |+ ++...|++++|.+.|.+.... .|+ ...|.
T Consensus 506 dvvTynaLI~gy-~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyn 583 (1060)
T PLN03218 506 NVHTFGALIDGC-ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVG 583 (1060)
T ss_pred CHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHH
Confidence 456677777777 48888888888887775432 32 345557788888888877653 343 55677
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------ 235 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------ 235 (365)
.+-.+|...|+ +++|.+.|++..+.+ +.+...|+.+...|.+ .|++++|+.+|+.
T Consensus 584 aLI~ay~k~G~--------------ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 584 ALMKACANAGQ--------------VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred HHHHHHHHCCC--------------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Confidence 77777777777 777777777777665 3456667777777777 7777777755332
Q ss_pred ----------------------HHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--
Q 017806 236 ----------------------ATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-- 290 (365)
Q Consensus 236 ----------------------A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 290 (365)
|++.+....+.. +-+..+|+.+...|.+.|++ ++|++.|++....
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~----------eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW----------KKALELYEDIKSIKL 715 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCC
Confidence 224444444332 22455666666666666664 8888888876553
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 291 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
.| +...|..|...|.+.|+.+++...+.
T Consensus 716 ~P-dvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 716 RP-TVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34 46677778888888887776655543
No 147
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.79 E-value=2.7e-08 Score=69.18 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=60.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+..|++++..+|++..+++.+|.++...|+ +++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------------YDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------------HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 457899999999999999999999999999999999999 999999999999999999888877664
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.79 E-value=6.7e-08 Score=87.33 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=121.4
Q ss_pred hhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHhcCccccCCCCchhhh
Q 017806 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP--E----DYDALYNWALVLQESADNVSLDSTSPSKDA 186 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~ 186 (365)
..++++|.+.|.++-. .+...+++++|..+|.++....- + -..++...+.++... +
T Consensus 28 ~~~~e~Aa~~y~~Aa~----~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~------------- 89 (282)
T PF14938_consen 28 KPDYEEAADLYEKAAN----CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D------------- 89 (282)
T ss_dssp CHHHHHHHHHHHHHHH----HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-------------
T ss_pred CCCHHHHHHHHHHHHH----HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C-------------
Confidence 3589999999998854 34445889999999999877542 1 134566667776665 7
Q ss_pred HHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHH
Q 017806 187 LLEEACKKYDEATRLCP--T----LHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWG 258 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~~~~~-g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 258 (365)
+++|+.+|++++++.- + -+.++.++|.+|.. . |++++|++.|++|+..|+.-= .+ ....++..+|
T Consensus 90 -~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A 162 (282)
T PF14938_consen 90 -PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAA 162 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHH
Confidence 9999999999998732 2 25689999999988 8 999999998888888887521 11 1246788999
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHhhhhhhhhc
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FH---RAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~---~~~~~lg~~~~~~g~~~~a~~ 316 (365)
.++..+|++ ++|+..|+++....-+ .. ..+...+.|++..|+...+..
T Consensus 163 ~l~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 163 DLYARLGRY----------EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHTT-H----------HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHhCCH----------HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999995 9999999999875321 11 345667888888887654433
No 149
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.5e-07 Score=82.38 Aligned_cols=165 Identities=14% Similarity=0.005 Sum_probs=120.4
Q ss_pred hhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
...++..|+.+++-...++.. |++..|+|++|+..|+-+...+.-+.+.+.+|+.|++-+|.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~------- 106 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ------- 106 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-------
Confidence 566788888888877766533 67778999999999988888777778888999999999888
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH-----------------------HHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE-----------------------LWKQAT 237 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~-----------------------~~~~A~ 237 (365)
|.+|...-.++ |+++.....+-.+..+ .++-++-.. .|+.||
T Consensus 107 -------Y~eA~~~~~ka----~k~pL~~RLlfhlahk----lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 107 -------YIEAKSIAEKA----PKTPLCIRLLFHLAHK----LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred -------HHHHHHHHhhC----CCChHHHHHHHHHHHH----hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 88888776665 3333222111111111 222111111 155577
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
..|.+.+..+|.....-.+++.||.++.=+ +.+.+.+.--++..|+.+.+.+.++-.++++
T Consensus 172 dvYkrvL~dn~ey~alNVy~ALCyyKlDYy----------dvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 172 DVYKRVLQDNPEYIALNVYMALCYYKLDYY----------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHhcchh----------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 999999999999988888999999999875 9999999988999999888877777766654
No 150
>PRK15331 chaperone protein SicA; Provisional
Probab=98.78 E-value=4.8e-08 Score=78.63 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=92.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 199 l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
..+.++.-+..+..|.-++. .|++++|. +.|+-....+|.+++.|..||.++..++++ +
T Consensus 30 ~gis~~~le~iY~~Ay~~y~----~Gk~~eA~-------~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~ 88 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYN----QGRLDEAE-------TFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------Q 88 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------H
Confidence 34455667788999999999 99999999 779999999999999999999999999995 9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
+|+..|-.+..++++++...+..|.|++.+|+...|...+..++.
T Consensus 89 ~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 89 KACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998877766555444
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=2.3e-07 Score=80.89 Aligned_cols=153 Identities=20% Similarity=0.135 Sum_probs=127.5
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
.+..+|..||+++..-.+.+|.+-..+..||.||+...+ |..|-.||++.-.+.|......+.-+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~--------------f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE--------------FALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 445679999999999999999999999999999999999 999999999999999999888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHH----------------HHHHH-------HHHHHhcCC--CCHHHHHHHHHHHHHhcCcch
Q 017806 215 AISDRAKMRGRTKEAEELWK----------------QATKN-------YEKAVQLNW--NSPQALNNWGLALQELSAIVP 269 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~----------------~A~~~-------~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~ 269 (365)
.+++ .+.+..|+.... .||++ .+-.++.-| +.++..++.|.++++.|++
T Consensus 87 SLY~----A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy-- 160 (459)
T KOG4340|consen 87 SLYK----ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY-- 160 (459)
T ss_pred HHHH----hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH--
Confidence 8888 888888876522 12221 112233334 5788999999999999995
Q ss_pred hHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 270 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
+.|++-|+.|++...-++-.-++++.+++..++...+.
T Consensus 161 --------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 161 --------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred --------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 99999999999999989999999999999999766553
No 152
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.76 E-value=1.7e-06 Score=90.81 Aligned_cols=197 Identities=13% Similarity=-0.005 Sum_probs=147.1
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC--hh---------hhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD--EE---------GRSRQRILTFAAKRYANAIERNP-EDYDALYN 163 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--~~---------~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 163 (365)
..+...+..+-..+ ...|++++|..+|.+..... |+ ++.+.|++++|+..|.+..+..- -+...|..
T Consensus 469 ~pD~~tynsLI~~y-~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYns 547 (1060)
T PLN03218 469 KADCKLYTTLISTC-AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547 (1060)
T ss_pred CCCHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34566777777788 59999999999999988653 22 56677999999999999877542 24778999
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
+...|...|+ +++|...|.+.... .|+ ...|+.+..+|.+ .|++++|++ .
T Consensus 548 LI~a~~k~G~--------------~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k----~G~ldeA~e-------l 601 (1060)
T PLN03218 548 LISACGQSGA--------------VDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN----AGQVDRAKE-------V 601 (1060)
T ss_pred HHHHHHHCCC--------------HHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH----CCCHHHHHH-------H
Confidence 9999999999 99999999999763 454 5788889999999 999999994 4
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHH-------------------------hhhHHHHHHHHHHHHHHhC-C
Q 017806 240 YEKAVQLN-WNSPQALNNWGLALQELSAIVPARE-------------------------KQTIVRTAISKFRAAIQLQ-F 292 (365)
Q Consensus 240 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~-------------------------~~~~~~~A~~~~~~al~~~-p 292 (365)
|+...+.+ +.+..+|+.+...|.+.|+++.|.. +.|++++|.+.|++..+.. +
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 55555544 3356677777777777777644433 3455688888888777653 2
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 293 DFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
-+...+..|..+|.+.|+.+++...+.
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 346677778888888887776655543
No 153
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.73 E-value=2.8e-07 Score=94.07 Aligned_cols=186 Identities=11% Similarity=-0.057 Sum_probs=117.5
Q ss_pred HhcCCChhHhhhcHHHHHHHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Q 017806 103 FSQGNTPHQLAEQNNAAMELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADN 174 (365)
Q Consensus 103 ~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 174 (365)
..+...| ...|++++|..+|.+....+.. ++...|++++|+..|.+..+.. .-+...+..+..++...|+
T Consensus 263 n~Li~~y-~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~- 340 (697)
T PLN03081 263 CALIDMY-SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL- 340 (697)
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc-
Confidence 3334455 3678888888888776554432 4555688888888888776643 2245577777888888888
Q ss_pred cccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 175 VSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 175 ~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
+++|...+...++.. +.+...++.|...|.+ .|++++|.+. |++..+ .+..+
T Consensus 341 -------------~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~v-------f~~m~~---~d~~t 393 (697)
T PLN03081 341 -------------LEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----WGRMEDARNV-------FDRMPR---KNLIS 393 (697)
T ss_pred -------------hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----CCCHHHHHHH-------HHhCCC---CCeee
Confidence 888888888888775 4566778888888888 8888888854 444322 24456
Q ss_pred HHHHHHHHHHhcCcchhHH-------------------------hhhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Q 017806 254 LNNWGLALQELSAIVPARE-------------------------KQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLY 306 (365)
Q Consensus 254 ~~~lg~~~~~~~~~~~~~~-------------------------~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~ 306 (365)
|+.+...|.+.|+.++|.. +.|++++|.++|+...+..+ -+...|..+..+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 6666666666666533322 22334666666666554211 12344555666666
Q ss_pred HhhhhhhhhcC
Q 017806 307 GLAEDTLRTGG 317 (365)
Q Consensus 307 ~~g~~~~a~~~ 317 (365)
+.|+.+++...
T Consensus 474 r~G~~~eA~~~ 484 (697)
T PLN03081 474 REGLLDEAYAM 484 (697)
T ss_pred hcCCHHHHHHH
Confidence 66665555443
No 154
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=8.1e-07 Score=79.22 Aligned_cols=183 Identities=15% Similarity=0.024 Sum_probs=132.1
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHH--------------HhC-
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAI--------------ERN- 154 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al--------------~~~- 154 (365)
....-+|.+++ .+|++++|...|.-+...+.. |++..|.|.+|...-.++- +++
T Consensus 58 ~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 58 SLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 44555688996 999999999999988875422 5677899999988765541 111
Q ss_pred -----------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Q 017806 155 -----------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 155 -----------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 223 (365)
.+..+-...|+.+++.... |++||+.|.+.+.-+|+.......++.+|++ +
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~H--------------YQeAIdvYkrvL~dn~ey~alNVy~ALCyyK----l 198 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMH--------------YQEAIDVYKRVLQDNPEYIALNVYMALCYYK----L 198 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHH--------------HHHHHHHHHHHHhcChhhhhhHHHHHHHHHh----c
Confidence 1112233445556666666 9999999999999999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH-------------------------------
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------------- 272 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------------- 272 (365)
.-++-+. ..+.--++..|++..+.+.++..++++-+-..++.
T Consensus 199 DYydvsq-------evl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 199 DYYDVSQ-------EVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred chhhhHH-------HHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 8887777 44555566777777777777666655433211111
Q ss_pred -------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 273 -------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 273 -------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+++++.+|+.+++ +++|..+.-+...|.+...+|+.
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhh
Confidence 5577788888766 46888888888888888888853
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.72 E-value=9.4e-08 Score=88.79 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=63.0
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHhcCCHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~g~~~~A 229 (365)
.+|+++.+|+++|.+|+.+|+ |++|+.+|+++|+++|++..+ |+|+|.+|.. +|++++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr--------------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEA 131 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR--------------VKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKA 131 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHH
Confidence 579999999999999999999 999999999999999999865 9999999999 9999999
Q ss_pred HHHHHHHHHH
Q 017806 230 EELWKQATKN 239 (365)
Q Consensus 230 ~~~~~~A~~~ 239 (365)
+..+++|+..
T Consensus 132 la~LrrALel 141 (453)
T PLN03098 132 ADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHh
Confidence 9665555553
No 156
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.70 E-value=2.9e-06 Score=72.78 Aligned_cols=171 Identities=26% Similarity=0.235 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.+..++..|..+...|+ |.+|+..|++++...|.. ..+.+.+|.++.. .|++.+|+
T Consensus 4 ~~~~lY~~a~~~~~~g~--------------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~--- 62 (203)
T PF13525_consen 4 TAEALYQKALEALQQGD--------------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAI--- 62 (203)
T ss_dssp -HHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHH---
T ss_pred CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHH---
Confidence 46788999999999999 999999999999998874 6889999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcc-hhHHhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Q 017806 234 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIV-PAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLY 306 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~ 306 (365)
..|++.++..|+++ .+++.+|.++..+..-. ......+...+|+..|+..+...|+.. .+...+..+-.
T Consensus 63 ----~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 63 ----AAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp ----HHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 77888888888864 68999999988775320 002344556899999999999999874 44455555555
Q ss_pred HhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
.+.+.+..++.+ .-....|..+...+......-|+......|+.++
T Consensus 139 ~la~~e~~ia~~-----Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 139 RLAEHELYIARF-----YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHHHHH-----HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 555554443322 0011245677777777777778777777766544
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.69 E-value=7.8e-08 Score=66.85 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
.|++++|+..|++++..+|++..+++.+|.++.. .|++++|. ..+.+++..+|+++.++..++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAE-------ELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHH-------HHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCcCHHHHHHHHhcC
Confidence 3459999999999999999999999999999999 99999999 78999999999998888777653
No 158
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=1.2e-07 Score=66.83 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=63.0
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
..+|...++ |++|+.++++++.++|+++..|..+|.++.. +|++.+|+ ..|++++
T Consensus 2 ~~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~-------~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQED--------------YEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEAL-------EDLERAL 56 (73)
T ss_pred HHHHHhCCC--------------HHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHH-------HHHHHHH
Confidence 467777888 9999999999999999999999999999999 99999999 7899999
Q ss_pred hcCCCCHHHHHHHHH
Q 017806 245 QLNWNSPQALNNWGL 259 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~ 259 (365)
+..|++..+...++.
T Consensus 57 ~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 57 ELSPDDPDARALRAM 71 (73)
T ss_pred HHCCCcHHHHHHHHh
Confidence 999998887665543
No 159
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.68 E-value=9.2e-08 Score=88.86 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=65.6
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCcchhHHhhhHH
Q 017806 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA---LNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 201 ~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
.+|+++.+|+++|.+|.. .|+|++|+ ..|+++++++|++..+ |+|+|.+|..+|+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~----lGryeEAI-------a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~---------- 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS----KGRVKDAL-------AQFETALELNPNPDEAQAAYYNKACCHAYREEG---------- 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------
Confidence 578999999999999999 99999999 8899999999999865 99999999999997
Q ss_pred HHHHHHHHHHHHh
Q 017806 278 RTAISKFRAAIQL 290 (365)
Q Consensus 278 ~~A~~~~~~al~~ 290 (365)
++|+.+|++|+++
T Consensus 129 dEAla~LrrALel 141 (453)
T PLN03098 129 KKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.68 E-value=3.5e-08 Score=89.12 Aligned_cols=159 Identities=19% Similarity=0.128 Sum_probs=112.6
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------hhhhhhhHHHHHHHHHHHHHhCC--CC----H
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------GRSRQRILTFAAKRYANAIERNP--ED----Y 158 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~A~~~~~~al~~~p--~~----~ 158 (365)
+.+...|..+ ...|++++|.+.|.++...... ..+...++++|+.+|++++.+.- ++ +
T Consensus 36 ~~y~~Aa~~f-k~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCF-KLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3345555666 4667777777777766554422 13445689999999999998742 22 5
Q ss_pred HHHHHHHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 159 DALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCP--T----LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 159 ~~~~~lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.++..+|.+|... |+ +++|+++|++|+++.. + -..++.++|.++.. .|+|++|+
T Consensus 115 ~~~~~lA~~ye~~~~d--------------~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~- 175 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGD--------------YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAI- 175 (282)
T ss_dssp HHHHHHHHHHCCTT----------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHH-
T ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHH-
Confidence 5788899999888 88 9999999999999732 1 24678899999999 99999999
Q ss_pred HHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 232 LWKQATKNYEKAVQLN---W----NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.|++..... + +-...+...+.|+...|+. ..|...|++....+|..
T Consensus 176 ------~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~----------v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 176 ------EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY----------VAARKALERYCSQDPSF 229 (282)
T ss_dssp ------HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHGTTSTTS
T ss_pred ------HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence 5566655432 1 1124567788899999996 99999999999998865
No 161
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.67 E-value=5.6e-06 Score=75.04 Aligned_cols=227 Identities=14% Similarity=0.053 Sum_probs=174.5
Q ss_pred hhhcHHHHHHHHHHhhccChh---h-------hhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE---G-------RSRQRILTFAAKRYANAIERNPE-DYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~---~-------~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
..|+|.+|.....+.-...+. + --..|+++.|=.++.++-+..++ ...+...++.++...|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d------- 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD------- 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-------
Confidence 568899999999887776655 1 12348999999999999998443 34567788888888898
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------------HH-----
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------AT----- 237 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------------------A~----- 237 (365)
++.|.....++++..|.++.+..-.-.+|.. .|+|.+...+..+ |.
T Consensus 169 -------~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 169 -------YPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred -------chhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999998876432 10
Q ss_pred ------------HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH---------------------hhhHHHHHHHHH
Q 017806 238 ------------KNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---------------------KQTIVRTAISKF 284 (365)
Q Consensus 238 ------------~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~ 284 (365)
.+.+..-..--+++.....++.-+..+|+.+.|.. +.+++..=++..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence 01111000112345666667777888888766655 457777778888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc-hHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 285 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN-ELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 285 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
++.+...|+++..+..||..+.+.+.+.++...+..+++..++ ..|...+..|.+.++...+...+..++-.
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8888889999999999999999999998888888777777666 46777888888888877777777777743
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=6.3e-07 Score=83.64 Aligned_cols=112 Identities=18% Similarity=0.089 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
.++++.|+..|++..+.+|+ +...++.++...++ -.+|+..+.+++...|.+...+...+..+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------------E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------------EVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 37899999999999998876 56678999999888 99999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.. .++++.|+ ...++++.+.|++...|+.|+.+|..+|++ +.|+-.+..
T Consensus 245 l~----k~~~~lAL-------~iAk~av~lsP~~f~~W~~La~~Yi~~~d~----------e~ALlaLNs 293 (395)
T PF09295_consen 245 LS----KKKYELAL-------EIAKKAVELSPSEFETWYQLAECYIQLGDF----------ENALLALNS 293 (395)
T ss_pred Hh----cCCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHhcCCH----------HHHHHHHhc
Confidence 99 99999999 889999999999999999999999999996 999876664
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=1.7e-07 Score=66.15 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
..++.. .+++++|+ +++++++.++|+++..|..+|.++..+|++ .+|+..|+++++..|
T Consensus 2 ~~~~~~----~~~~~~A~-------~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEAL-------EVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSP 60 (73)
T ss_pred HHHHHh----CCCHHHHH-------HHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCC
Confidence 456777 99999999 889999999999999999999999999996 999999999999999
Q ss_pred CCHHHHHHHH
Q 017806 293 DFHRAIYNLG 302 (365)
Q Consensus 293 ~~~~~~~~lg 302 (365)
++..+....+
T Consensus 61 ~~~~~~~~~a 70 (73)
T PF13371_consen 61 DDPDARALRA 70 (73)
T ss_pred CcHHHHHHHH
Confidence 9988765544
No 164
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=3.6e-07 Score=75.18 Aligned_cols=99 Identities=22% Similarity=0.195 Sum_probs=87.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 132 EGRSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 132 ~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
+.++..|+|.+|...|..||++-|.. ..++.++|.++..++. ++.||..+.++|+++|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--------------~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--------------WESAIEDCSKAIELNPTYE 168 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--------------HHHHHHHHHhhHhcCchhH
Confidence 34577788999999999999987764 4578899999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
.++..++.+|.+ ..+|++|+ ..|.+.++.+|....+--
T Consensus 169 kAl~RRAeayek----~ek~eeal-------eDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 169 KALERRAEAYEK----MEKYEEAL-------EDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHHHHHHHh----hhhHHHHH-------HHHHHHHHhCcchHHHHH
Confidence 999999999999 99999999 789999999998765543
No 165
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.66 E-value=2.8e-08 Score=71.27 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 203 p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
|+-..+++++|.++.. +|++++|+.+|++|+..++..-...|..+.+++++|.++..+|++ ++|++
T Consensus 2 ~~~a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~ 67 (78)
T PF13424_consen 2 PDTANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHH
Confidence 3456789999999999 999999999999888884333222344578999999999999996 99999
Q ss_pred HHHHHHHh
Q 017806 283 KFRAAIQL 290 (365)
Q Consensus 283 ~~~~al~~ 290 (365)
+|++++++
T Consensus 68 ~~~~al~i 75 (78)
T PF13424_consen 68 YYQKALDI 75 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999976
No 166
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.64 E-value=5.2e-08 Score=69.83 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---CP----TLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
|+...++.++|.+|..+|+ |++|+.+|++++++ .+ ..+.+++++|.++.. .|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~ 63 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR--------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHH
Confidence 4456789999999999999 99999999999976 12 236789999999999 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 017806 228 EAEELWKQATKNYEK 242 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~ 242 (365)
+|++++++|++.+++
T Consensus 64 ~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 64 EALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcC
Confidence 999887777776653
No 167
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=3.2e-07 Score=76.45 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
.+..++.+|..|-.+|- +.-|.-.|.+++.+.|+.+.+++.||..+.. .|+|+.|.
T Consensus 64 RA~l~fERGvlYDSlGL--------------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~----a~~fdaa~------ 119 (297)
T COG4785 64 RAQLLFERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AGNFDAAY------ 119 (297)
T ss_pred HHHHHHHhcchhhhhhH--------------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh----cccchHHH------
Confidence 45667888888888888 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
+.|...+++||.+--+..|+|..+..-|++ .-|.+.|.+-.+.+|++|.
T Consensus 120 -eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~----------~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 120 -EAFDSVLELDPTYNYAHLNRGIALYYGGRY----------KLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred -HHhhhHhccCCcchHHHhccceeeeecCch----------HhhHHHHHHHHhcCCCChH
Confidence 889999999999999999999999999996 9999999999999998874
No 168
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.58 E-value=2.1e-06 Score=69.43 Aligned_cols=108 Identities=18% Similarity=0.084 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLAL 261 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~ 261 (365)
...+...+++.+.-.|+. ..+...+|.++.. .|++++|+ ..|++++...|+. ..+..+++.++
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~-------~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAK-------AALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 888888999999999988 6778889999999 99999999 7788888876554 46888999999
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
...|++ ++|+..++. +.-.+-.+.++..+|.++...|+..++...
T Consensus 96 ~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 96 LQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999996 999999976 334455577888899999999988766554
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.57 E-value=1e-05 Score=68.88 Aligned_cols=164 Identities=26% Similarity=0.311 Sum_probs=115.3
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCC---CCHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNP---EDYD 159 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p---~~~~ 159 (365)
..+.....+...|... ...+++..++..+..++...+. .+...|+++.|+..|.+++..+| ....
T Consensus 90 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (291)
T COG0457 90 LLPNLAEALLNLGLLL-EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAE 168 (291)
T ss_pred hccchHHHHHHHHHHH-HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHH
Confidence 4556666677777777 4777777777777777775543 24455777777777777777666 3455
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
....++..+...++ ++.++..+.+++...+. ....+..++..+.. .+++..|+ .
T Consensus 169 ~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~ 223 (291)
T COG0457 169 ALLALGALLEALGR--------------YEEALELLEKALKLNPDDDAEALLNLGLLYLK----LGKYEEAL-------E 223 (291)
T ss_pred HHHHhhhHHHHhcC--------------HHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cccHHHHH-------H
Confidence 55666666666666 77778888887777777 57777777777777 77777777 6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
.+..++...|.....+..++..+...+.. +.+...+.+++...|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 224 YYEKALELDPDNAEALYNLALLLLELGRY----------EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccHHHHhhHHHHHHHcCCH----------HHHHHHHHHHHHhCcc
Confidence 67777777777666777777777755544 7777777777777776
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=1.9e-06 Score=80.49 Aligned_cols=105 Identities=16% Similarity=0.039 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++.|+..|++..+.+|+ +...++.++.. .++-.+|+ +.+.++++.+|.+...+...+..+...+++
T Consensus 185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~----~~~E~~AI-------~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VAVLLARVYLL----MNEEVEAI-------RLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHh----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 99999999999998875 56678999988 88888888 778888899999999999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
+.|+...++++.+.|++...|+.|+.+|..+|+.+.|+.
T Consensus 251 ----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 251 ----------ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred ----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999888753
No 171
>PLN03077 Protein ECB2; Provisional
Probab=98.55 E-value=3.8e-06 Score=87.82 Aligned_cols=151 Identities=10% Similarity=-0.012 Sum_probs=86.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWA 213 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 213 (365)
+.|++++|...|... +.+..+|..+...|...|+ .++|+..|++..+. .|+ ...+..+-
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~--------------~~~A~~lf~~M~~~g~~Pd-~~T~~~ll 596 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK--------------GSMAVELFNRMVESGVNPD-EVTFISLL 596 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCC-cccHHHHH
Confidence 345566666555553 3455566666666666666 55555555555442 232 22333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhcCcchhHH------------------
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQ---LNWNSPQALNNWGLALQELSAIVPARE------------------ 272 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------ 272 (365)
.++.+ .|.+++|..+ |+...+ +.| +...|..+..+|.+.|++++|..
T Consensus 597 ~a~~~----~g~v~ea~~~-------f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl 664 (857)
T PLN03077 597 CACSR----SGMVTQGLEY-------FHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664 (857)
T ss_pred HHHhh----cChHHHHHHH-------HHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 44444 5555555532 222221 122 22344444444444444433333
Q ss_pred ----hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 273 ----KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 273 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
..|+.+.+....++.++++|++...|..|+.+|...|++.++...
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 123348888889999999999999999999999999988776543
No 172
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=2.5e-06 Score=80.73 Aligned_cols=174 Identities=17% Similarity=0.066 Sum_probs=129.9
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCccccC
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPE---DYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
..|+|++|+....+.+...|+ +....+.|++|+.. ++.++. +....+..+.|.+++++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk----- 94 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNK----- 94 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHccc-----
Confidence 778999999999999999765 34556888888743 444442 12223789999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------------HHHH-
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------ATKN- 239 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------------------A~~~- 239 (365)
.++|+.+++ .+++.+..+.-..|.++++ +|+|++|+..|+. |+..
T Consensus 95 ---------~Dealk~~~---~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 95 ---------LDEALKTLK---GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred ---------HHHHHHHHh---cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999999999 5667777788889999999 9999999988764 1111
Q ss_pred ----HHHHHhcCCC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-------CCCC--------HHHHH
Q 017806 240 ----YEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-------QFDF--------HRAIY 299 (365)
Q Consensus 240 ----~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~--------~~~~~ 299 (365)
..+.+...|. +.+.++|.+.++...|++ .+|++.+++|+.+ ...+ ..+..
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky----------~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKY----------NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 2233333444 678899999999999996 9999999999544 1111 23567
Q ss_pred HHHHHHHHhhhhhhhhcCcCC
Q 017806 300 NLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 300 ~lg~~~~~~g~~~~a~~~~~~ 320 (365)
.|+.++..+|+..++...+..
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHH
Confidence 789999999998887664433
No 173
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4e-07 Score=76.93 Aligned_cols=91 Identities=21% Similarity=0.092 Sum_probs=81.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.++.-..|+.|+.+|.++|.++|..+..|.+.+.|+.++.+ ++.+...++++++++|+.+..++.+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~--------------~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH--------------WEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--------------hhhhhhhHHHHHhcChHHHHHHHHH
Confidence 44556779999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
|..+.. ...|++||..+.+|...++
T Consensus 85 g~~~l~----s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 85 GQWLLQ----SKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHHHHh----hccccHHHHHHHHHHHHHh
Confidence 999999 9999999966666544433
No 174
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.53 E-value=3.9e-06 Score=66.20 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.+..++.-|......|+ |++|++.|+......|. ...+...||.+++. .|++++|+
T Consensus 9 ~~~~ly~~a~~~l~~~~--------------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~--- 67 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGN--------------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAI--- 67 (142)
T ss_pred CHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHH---
Confidence 35678889999999999 99999999999999876 46789999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcC-----cchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 234 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSA-----IVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
..+++-++++|+++ .+++..|.+++.+.. +-......+....|...|++.|...|++..+
T Consensus 68 ----a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 68 ----AAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred ----HHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 77999999999875 689999999999865 0011123344589999999999999987654
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.53 E-value=4e-06 Score=64.93 Aligned_cols=90 Identities=23% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
.+++++|.++.. .|+.++|+ ..|++++...... ..++..+|.+|..+|++ ++|+..
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai-------~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~ 60 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAI-------PLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALAL 60 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHH-------HHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHH
Confidence 578999999999 99999999 7788888765443 67999999999999996 999999
Q ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 284 FRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 284 ~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+++++...|+ +..+...++.++...|+..++...
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999888 788889999999999988765543
No 176
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=2.9e-06 Score=73.78 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=90.7
Q ss_pred HHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 122 LINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 122 ~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
.|+.|+.+ +..|+|..|...|..-++..|+. +.++|+||.+++.+|+ |+.|...|..+
T Consensus 144 ~Y~~A~~~-----~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~--------------y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDL-----YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD--------------YEDAAYIFARV 204 (262)
T ss_pred HHHHHHHH-----HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc--------------chHHHHHHHHH
Confidence 45555443 55688999999999999999976 6899999999999999 99999999999
Q ss_pred HHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 199 TRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 199 l~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
++-.|+ -+++++.||.+... +|+.++|- ..|+++++..|+...+..
T Consensus 205 ~k~~P~s~KApdallKlg~~~~~----l~~~d~A~-------atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 205 VKDYPKSPKAPDALLKLGVSLGR----LGNTDEAC-------ATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHhCCCCCCChHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHHCCCCHHHHH
Confidence 998776 47899999999999 99999999 779999999998876654
No 177
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.52 E-value=3.9e-06 Score=64.40 Aligned_cols=100 Identities=32% Similarity=0.351 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+-.-|.++...|+ ++.|++.|.+++.+.|.++.+|+|.+.++.- +|+.++|+ ..+
T Consensus 46 LEl~~valaE~g~--------------Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~AL-------dDL 100 (175)
T KOG4555|consen 46 LELKAIALAEAGD--------------LDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEAL-------DDL 100 (175)
T ss_pred HHHHHHHHHhccc--------------hHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHH-------HHH
Confidence 3455777788888 9999999999999999999999999999999 99999999 668
Q ss_pred HHHHhcCCC----CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 241 EKAVQLNWN----SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 241 ~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
++++++... -..++...|.+|..+|+. +.|...|+.|-++....+
T Consensus 101 n~AleLag~~trtacqa~vQRg~lyRl~g~d----------d~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 101 NKALELAGDQTRTACQAFVQRGLLYRLLGND----------DAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHhCch----------HHHHHhHHHHHHhCCHHH
Confidence 888877643 246888999999999997 999999999988876544
No 178
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=4.4e-06 Score=72.72 Aligned_cols=104 Identities=24% Similarity=0.298 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
.|+.|.-++..|+ |..|...|...++..|+. +.++|-||.+++. +|++++|.
T Consensus 144 ~Y~~A~~~~ksgd--------------y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa------- 198 (262)
T COG1729 144 LYNAALDLYKSGD--------------YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAA------- 198 (262)
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHH-------
Confidence 7889999999999 999999999999999984 7899999999999 99999999
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 238 KNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 238 ~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
..|..+++..|+ -+++++-+|.++..+|+. ++|...|+++++..|+...+..
T Consensus 199 ~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~----------d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 199 YIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT----------DEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHCCCCHHHHH
Confidence 557777766655 578999999999999997 9999999999999999876654
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.50 E-value=3.8e-05 Score=66.35 Aligned_cols=163 Identities=20% Similarity=0.141 Sum_probs=118.6
Q ss_pred HHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHH
Q 017806 118 AAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194 (365)
Q Consensus 118 ~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~ 194 (365)
-+.++|++++.. +..|++++|+..|+.+...+|.. ..+...++.++...++ +++|+..
T Consensus 33 p~~~LY~~g~~~-----L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~--------------y~~A~~~ 93 (254)
T COG4105 33 PASELYNEGLTE-----LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE--------------YDLALAY 93 (254)
T ss_pred CHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc--------------HHHHHHH
Confidence 345556555443 45578899999999988887754 5678999999999999 9999999
Q ss_pred HHHHHHhCCCCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHH--------------
Q 017806 195 YDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QAL-------------- 254 (365)
Q Consensus 195 ~~~al~~~p~~~---~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~---~~~-------------- 254 (365)
.++.+.+.|.++ -+++..|.++...+ .+...--..-..|+..|+..+..-|++. ++.
T Consensus 94 ~drFi~lyP~~~n~dY~~YlkgLs~~~~i---~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 94 IDRFIRLYPTHPNADYAYYLKGLSYFFQI---DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhccC---CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 999999998864 46777888776532 2222222223456688999999999863 221
Q ss_pred HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhhhh
Q 017806 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 255 ~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~ 312 (365)
...|..|.+.|. |..|+..++.+++-.|+- .+++..+..+|..+|-..
T Consensus 171 m~IaryY~kr~~----------~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~ 221 (254)
T COG4105 171 MAIARYYLKRGA----------YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTD 221 (254)
T ss_pred HHHHHHHHHhcC----------hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChH
Confidence 134555666666 599999999999986654 467888899999998554
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.48 E-value=4e-05 Score=62.72 Aligned_cols=133 Identities=18% Similarity=0.111 Sum_probs=109.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhc
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTLHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~ 223 (365)
.-..+.++..|... -.+.||..+..+|+ +.+|..+|++++. +..+++..+..++.+.+. .
T Consensus 77 Rea~~~~~~ApTvq-nr~rLa~al~elGr--------------~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----~ 137 (251)
T COG4700 77 REATEELAIAPTVQ-NRYRLANALAELGR--------------YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----I 137 (251)
T ss_pred HHHHHHHhhchhHH-HHHHHHHHHHHhhh--------------hhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----h
Confidence 33344555556543 36789999999999 9999999999876 567889999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (365)
+++..|. ..+++..+.+|. .++....+|.+|..+|.+ .+|...|+.++...|+ +.+....
T Consensus 138 ~~~A~a~-------~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~----------a~Aesafe~a~~~ypg-~~ar~~Y 199 (251)
T COG4700 138 QEFAAAQ-------QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY----------ADAESAFEVAISYYPG-PQARIYY 199 (251)
T ss_pred ccHHHHH-------HHHHHHhhcCCccCCCCchHHHHHHHHhcCCc----------hhHHHHHHHHHHhCCC-HHHHHHH
Confidence 9999999 668888888875 578889999999999996 8899999999999986 6777778
Q ss_pred HHHHHHhhhhhhh
Q 017806 302 GTVLYGLAEDTLR 314 (365)
Q Consensus 302 g~~~~~~g~~~~a 314 (365)
+..+.++|+..++
T Consensus 200 ~e~La~qgr~~ea 212 (251)
T COG4700 200 AEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHhcchhHH
Confidence 8888888865433
No 181
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=5.9e-05 Score=70.02 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=116.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------------hhh---hhhhHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------------GRS---RQRILTFAAKRYANAI 151 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~---~~~~~~~A~~~~~~al 151 (365)
+..+|-+-++|+..-.+. +..|+.+.-.+.|++||...|. +++ ...+.+.+.+.|+.+|
T Consensus 315 v~~np~nYDsWfdylrL~-e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLE-ESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHH-HhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 577999999998877777 6889999999999999998876 122 2378999999999999
Q ss_pred HhCCCC----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 152 ERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 152 ~~~p~~----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
++-|.. +..|...|.....+.+ ...|...+-.||...|.+- ++...-.+-.+ +++++
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~--------------l~~ARkiLG~AIG~cPK~K-lFk~YIelElq----L~efD 454 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLN--------------LTGARKILGNAIGKCPKDK-LFKGYIELELQ----LREFD 454 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcc--------------cHHHHHHHHHHhccCCchh-HHHHHHHHHHH----HhhHH
Confidence 998863 5567777777777777 7777777777777777652 22222223333 44444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
... +.|++-|+..|.+..+|...|.+-..+|+. +.|...|+-|++.
T Consensus 455 RcR-------kLYEkfle~~Pe~c~~W~kyaElE~~Lgdt----------dRaRaifelAi~q 500 (677)
T KOG1915|consen 455 RCR-------KLYEKFLEFSPENCYAWSKYAELETSLGDT----------DRARAIFELAISQ 500 (677)
T ss_pred HHH-------HHHHHHHhcChHhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhcC
Confidence 444 777777777787777887777777777776 5555555555443
No 182
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.46 E-value=7.2e-05 Score=63.56 Aligned_cols=175 Identities=26% Similarity=0.260 Sum_probs=140.8
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhc--cChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTG--VDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~--~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
.......+..+ ...+.+..++..+...+. ..+. .....+++..++..+.+++..++.........+.
T Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALAL-LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHH-HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 56667777777 488889999999988875 2222 2233477888999999999988877666666666
Q ss_pred -HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 167 -VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP---TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 167 -~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
++...|+ ++.|+..|.+++..+| .....+..++..+.. .+++..++ ..+.+
T Consensus 138 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~~~~ 192 (291)
T COG0457 138 GALYELGD--------------YEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEAL-------ELLEK 192 (291)
T ss_pred HHHHHcCC--------------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHH-------HHHHH
Confidence 8889999 9999999999988777 456667777777777 88888888 77888
Q ss_pred HHhcCCC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 243 AVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 243 al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++...+. ....+..++.++...+++ ..|+..+.+++...|.....+..++..+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKY----------EEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccH----------HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 8888888 689999999999999985 99999999999999987777888888877444
No 183
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.3e-07 Score=75.37 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
.+|..||.+|.++|.++|..+..|.|.+.++.+ ..+|+.+. ...+++++++|+.+..++.+|.++....
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~-------~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVE-------EDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhh-------hhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 349999999999999999999999999999999 99999999 7799999999999999999999999999
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+ ++||..+++|..+
T Consensus 93 ~~----------~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GY----------DEAIKVLQRAYSL 107 (284)
T ss_pred cc----------cHHHHHHHHHHHH
Confidence 96 9999999999766
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.40 E-value=9.8e-06 Score=63.98 Aligned_cols=101 Identities=25% Similarity=0.246 Sum_probs=77.5
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HH
Q 017806 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 208 (365)
+..|+|.+|++.|+.+....|.. ..+...||.+|+..++ |++|+..+++.|+++|.++ -+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~--------------y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD--------------YEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCCCccHH
Confidence 44567888888888887777653 5688999999999999 9999999999999999864 57
Q ss_pred HHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 209 FYNWAIAISDRAKMRGR--------TKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~--------~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
++..|.++.. +.. .+.-.+....|...|++.+...|++..+
T Consensus 87 ~Y~~gL~~~~----~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYE----QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHH----HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8899998888 543 1111122344558899999999987543
No 185
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=4.9e-05 Score=65.63 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=130.5
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
....+...+..-|.++. ..|++++|.........+... +..+..+++-|....++...++.+. .+..||..+
T Consensus 103 ~~~sn~i~~l~aa~i~~-~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~aw 179 (299)
T KOG3081|consen 103 TDGSNLIDLLLAAIIYM-HDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAW 179 (299)
T ss_pred ccchhHHHHHHhhHHhh-cCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHH
Confidence 33344455556677774 999999999999886555533 5667788999999999998886554 345566655
Q ss_pred HHh--cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 169 QES--ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 169 ~~~--~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
... |. +.+..|.-.|+..-+..|..+...+..+.++.. +|+|++|. ..++.++..
T Consensus 180 v~la~gg------------ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe-------~lL~eaL~k 236 (299)
T KOG3081|consen 180 VKLATGG------------EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAE-------SLLEEALDK 236 (299)
T ss_pred HHHhccc------------hhhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHH-------HHHHHHHhc
Confidence 543 32 338999999999999888899999999999999 99999999 669999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH-HHHHHHHHhCCCCHHH
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI-SKFRAAIQLQFDFHRA 297 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~ 297 (365)
++++++++.|+-.+-...|.. .++. +...+....+|+++.+
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd----------~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKD----------AEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHhcCCcchHH
Confidence 999999999999999999986 4444 4455555667877654
No 186
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=3.2e-05 Score=67.74 Aligned_cols=201 Identities=15% Similarity=0.041 Sum_probs=140.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHH---------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIE--------- 152 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~--------- 152 (365)
.+..|.+-.++..+|.||+ ...++..|.+.|++.-.+.|. ..+..+.+..|+........
T Consensus 37 ~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l 115 (459)
T KOG4340|consen 37 LERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL 115 (459)
T ss_pred HhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence 6788888999999999996 999999999999999999887 22223445555544332221
Q ss_pred ---------------------hCC--CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 153 ---------------------RNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209 (365)
Q Consensus 153 ---------------------~~p--~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 209 (365)
.-| +.++...+.|.+.++.|+ |+.|++-|+.|++...-++..-
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq--------------yEaAvqkFqaAlqvsGyqpllA 181 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ--------------YEAAVQKFQAALQVSGYQPLLA 181 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecccc--------------HHHHHHHHHHHHhhcCCCchhH
Confidence 113 345555666666666666 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------------------------HHHHHHHHHHHHHh
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-------------------------PQALNNWGLALQEL 264 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-------------------------~~~~~~lg~~~~~~ 264 (365)
++++.++++ .|+++.|+++... ..++.++..|.. .++++..+.++++.
T Consensus 182 YniALaHy~----~~qyasALk~iSE---IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 182 YNLALAHYS----SRQYASALKHISE---IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred HHHHHHHHh----hhhHHHHHHHHHH---HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 999999999 9999999954322 233333333321 24556667777888
Q ss_pred cCcchhHH-------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 265 SAIVPARE-------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 265 ~~~~~~~~-------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
++++.|.+ ..+++-+..+-++=.++++|--.+.+-|+-.+|++..-...+
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 88755554 224455566666667777886677788877777766544433
No 187
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.40 E-value=8.8e-06 Score=62.50 Aligned_cols=83 Identities=23% Similarity=0.191 Sum_probs=73.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC----HHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAFY 210 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~ 210 (365)
...|+++.|++.|.++|.+-|.++.+|+|++.++.-.|+ .++|+..+.+++++.... ..++.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--------------~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD--------------DEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--------------hHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 344779999999999999999999999999999999999 999999999999996543 46789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
..|.+|.. +|+.+.|...|+.
T Consensus 120 QRg~lyRl----~g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 120 QRGLLYRL----LGNDDAARADFEA 140 (175)
T ss_pred HHHHHHHH----hCchHHHHHhHHH
Confidence 99999999 9999999944433
No 188
>PLN03077 Protein ECB2; Provisional
Probab=98.39 E-value=2.6e-05 Score=81.67 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~ 265 (365)
+++|...|++. +.+...|+.+...|.. .|+.++|+ ..|++..+ ..|+. .++..+-.++.+.|
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~----~G~~~~A~-------~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g 603 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVA----HGKGSMAV-------ELFNRMVESGVNPDE-VTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCCc-ccHHHHHHHHhhcC
Confidence 56665555553 3445566666666666 66666666 44554443 23443 33444445566666
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQL---QFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
. +++|..+|++..+. .| +...|..+..++.+.|+..++.....
T Consensus 604 ~----------v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 604 M----------VTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred h----------HHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6 49999999988743 34 35778888999999998877765543
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=9.9e-05 Score=60.44 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=94.0
Q ss_pred hhhhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYN 211 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 211 (365)
...|++.+|..+|++++. +..+++..+..+++..+..++ +..|...+++..+.+|. .++....
T Consensus 100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~--------------~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE--------------FAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHhhcCCccCCCCchHH
Confidence 445889999999999887 567889999999999999999 99999999999999886 6788888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+|.++.. .|++.+|. ..|+.++...|+ +.+-..++..+..+|+.
T Consensus 166 ~aR~laa----~g~~a~Ae-------safe~a~~~ypg-~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 166 FARTLAA----QGKYADAE-------SAFEVAISYYPG-PQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHHHHh----cCCchhHH-------HHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence 9999999 99999999 668888877775 67888899999999986
No 190
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.32 E-value=9.9e-05 Score=63.82 Aligned_cols=169 Identities=15% Similarity=0.099 Sum_probs=129.0
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCHH---H
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDYD---A 160 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~---~ 160 (365)
..+..|+..|...+ +.|++++|+..|+......|. +.++.++++.|+...++-+.++|.++. +
T Consensus 32 ~p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 32 LPASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 34577899999885 999999999999999988876 467779999999999999999987754 5
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HH--------------HHHHHHHHHHHHHhc
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DA--------------FYNWAIAISDRAKMR 223 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~--------------~~~lg~~~~~~~~~~ 223 (365)
++..|.+++..=+ ........-.+|+..|+..+...|++. ++ -...|..|.+ .
T Consensus 111 ~YlkgLs~~~~i~------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k----r 180 (254)
T COG4105 111 YYLKGLSYFFQID------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK----R 180 (254)
T ss_pred HHHHHHHHhccCC------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 7777888665432 445556668899999999999999852 11 2235555666 7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
|.+..|+ ..++.+++.-|+ -.+++..+..+|..+|-. ++| +-..++|..+..+
T Consensus 181 ~~~~AA~-------nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~----------~~a-~~~~~vl~~N~p~ 236 (254)
T COG4105 181 GAYVAAI-------NRFEEVLENYPDTSAVREALARLEEAYYALGLT----------DEA-KKTAKVLGANYPD 236 (254)
T ss_pred cChHHHH-------HHHHHHHhccccccchHHHHHHHHHHHHHhCCh----------HHH-HHHHHHHHhcCCC
Confidence 7777777 667777776655 357889999999999985 665 4456777776443
No 191
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=3.3e-05 Score=81.34 Aligned_cols=194 Identities=14% Similarity=0.031 Sum_probs=136.4
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC-------
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE------- 156 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~------- 156 (365)
.++..+|.++. ..|++++|..++.+++..... .+...|+++.|...+.+++.+...
T Consensus 492 ~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 492 VATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 35667788884 899999999999998865321 234569999999999998886221
Q ss_pred -CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 157 -DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 157 -~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
....+..+|.++...|+ +++|...+++++.+... ...++..+|.++.. .|++++|.
T Consensus 571 ~~~~~~~~la~~~~~~G~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~ 632 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWAR--------------LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNAR 632 (903)
T ss_pred HHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHH
Confidence 23345678888999999 99999999999886332 35567778999999 99999999
Q ss_pred HHHHHHHHHHHHHH--------------------------------hcCC--CC----HHHHHHHHHHHHHhcCcchhHH
Q 017806 231 ELWKQATKNYEKAV--------------------------------QLNW--NS----PQALNNWGLALQELSAIVPARE 272 (365)
Q Consensus 231 ~~~~~A~~~~~~al--------------------------------~~~p--~~----~~~~~~lg~~~~~~~~~~~~~~ 272 (365)
..++++...+...- ...+ .. ...+..+|.++...|++
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~----- 707 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF----- 707 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH-----
Confidence 88777654332110 0000 00 01134666777777774
Q ss_pred hhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 273 KQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
++|+..|++++... .....++..+|.++...|+...+......+.
T Consensus 708 -----~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 708 -----DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred -----HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999863 1234678889999999998776655544333
No 192
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=3.7e-05 Score=81.00 Aligned_cols=189 Identities=11% Similarity=-0.052 Sum_probs=138.2
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh--------h-----------hhhhhhhHHHHHHHHHHHHHhCCCC--
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDE--------E-----------GRSRQRILTFAAKRYANAIERNPED-- 157 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~--------~-----------~~~~~~~~~~A~~~~~~al~~~p~~-- 157 (365)
+.....++.++. ..|++++|..++..+....+ . .....|++++|...+++++...+..
T Consensus 409 ~~l~~~~a~~~~-~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 409 PRLVLLQAWLAQ-SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred cchHHHHHHHHH-HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 344455566663 88999999999988754311 1 1335689999999999999865543
Q ss_pred ---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHH
Q 017806 158 ---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKE 228 (365)
Q Consensus 158 ---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~ 228 (365)
..++..+|.++...|+ +++|...+++++..... ...++.++|.++.. .|++++
T Consensus 488 ~~~~~a~~~lg~~~~~~G~--------------~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----~G~~~~ 549 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGE--------------LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----QGFLQA 549 (903)
T ss_pred HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----CCCHHH
Confidence 2356788999999999 99999999999976432 13466788999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHH
Q 017806 229 AEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-----FHRAIYNLG 302 (365)
Q Consensus 229 A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg 302 (365)
|...+++++...+..-.. .+.....+..+|.++...|++ ++|...+++++.+... ...++..+|
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL----------DEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 998887777665553210 122234567889999999996 9999999999876321 245667788
Q ss_pred HHHHHhhhhhhhhc
Q 017806 303 TVLYGLAEDTLRTG 316 (365)
Q Consensus 303 ~~~~~~g~~~~a~~ 316 (365)
.++...|+...+..
T Consensus 620 ~~~~~~G~~~~A~~ 633 (903)
T PRK04841 620 KISLARGDLDNARR 633 (903)
T ss_pred HHHHHcCCHHHHHH
Confidence 88888887665543
No 193
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.28 E-value=8.7e-07 Score=82.25 Aligned_cols=105 Identities=21% Similarity=0.160 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
.+.|+.|+..|.+||+++|+++..+.+++.++.+ .+++..|+ ..+.++++++|....+|+..|.+.+.+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al-------~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGAL-------HDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHH-------HHHHhhhhcCchhhheeeeccHHHHhH
Confidence 3449999999999999999999999999999999 99999999 889999999999999999999999999
Q ss_pred cCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
+.+ .+|...|++...+.|+++.+...+-.|-....+
T Consensus 86 ~~~----------~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 86 GEF----------KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHH----------HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 996 999999999999999999998888887665544
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.22 E-value=3.4e-06 Score=52.99 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+.+|..+|.+|..+|+ +++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~--------------~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ--------------PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999 999999999999999999999999885
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.21 E-value=3.1e-06 Score=53.19 Aligned_cols=43 Identities=26% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
+.+|..+|.+|..+|++ ++|++.|+++++.+|+++.+|..||.
T Consensus 1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46899999999999997 99999999999999999999999885
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.21 E-value=1.9e-06 Score=50.71 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 194 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
+|+++|+++|+++.+|++||.+|.. .|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence 4899999999999999999999999 99999986
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00035 Score=60.45 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=110.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+...+++++|.+...+. .+-++...--.++.++.+ ++-|...+++..+++.+ ..+..|+
T Consensus 118 ~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r--------------~d~A~~~lk~mq~ided--~tLtQLA 176 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR--------------FDLAEKELKKMQQIDED--ATLTQLA 176 (299)
T ss_pred hhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHccchH--HHHHHHH
Confidence 34457888888877663 334455555567777777 99999999999887744 4556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
.++...+--.+++.+|. -.|+..-+.-|-.+...+..+.|...++++ ++|...++.+|..+++
T Consensus 177 ~awv~la~ggek~qdAf-------yifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAF-------YIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHHhccchhhhhHH-------HHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccCC
Confidence 66665333345566666 778887775666789999999999999996 9999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q 017806 294 FHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~~~ 312 (365)
+++.+.|+-.+-..+|.+.
T Consensus 240 dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDA 258 (299)
T ss_pred CHHHHHHHHHHHHHhCCCh
Confidence 9999999999999999775
No 198
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.16 E-value=2.7e-06 Score=78.99 Aligned_cols=106 Identities=25% Similarity=0.232 Sum_probs=95.2
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..+.|+.|+..|.++|+++|+++..+-+++.++...++ |..|+..+.+|++++|....+|+..|.
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--------------~~~Al~Da~kaie~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--------------FGGALHDALKAIELDPTYIKAYVRRGT 80 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeech--------------hhhHHHHHHhhhhcCchhhheeeeccH
Confidence 445779999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+... .+++.+|. ..|++...+.|+++.+...+-.|-....
T Consensus 81 a~m~----l~~~~~A~-------~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 81 AVMA----LGEFKKAL-------LDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHh----HHHHHHHH-------HHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 9999 99999999 8899999999999988877766654433
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00019 Score=61.94 Aligned_cols=135 Identities=17% Similarity=0.204 Sum_probs=110.6
Q ss_pred hhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH----hCC--CCHH
Q 017806 135 SRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----LCP--TLHD 207 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~----~~p--~~~~ 207 (365)
...|+|.-.+..+.++++.+ |..+.....||.+..+.|+ .+.|..+|++.-+ ++. .+..
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD--------------~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD--------------IKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHHhhhhccchhHH
Confidence 33488999999999999998 6788888999999999999 8888888885432 222 2445
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
...+.+.++.- .+++.+|. ..|.+.+..||.++.+.++.+.|+..+|+. ..|++..+.+
T Consensus 254 V~~n~a~i~lg----~nn~a~a~-------r~~~~i~~~D~~~~~a~NnKALcllYlg~l----------~DAiK~~e~~ 312 (366)
T KOG2796|consen 254 VLMNSAFLHLG----QNNFAEAH-------RFFTEILRMDPRNAVANNNKALCLLYLGKL----------KDALKQLEAM 312 (366)
T ss_pred HHhhhhhheec----ccchHHHH-------HHHhhccccCCCchhhhchHHHHHHHHHHH----------HHHHHHHHHH
Confidence 67777778877 78888888 779999999999999999999999999997 9999999999
Q ss_pred HHhCCCCH---HHHHHHHHH
Q 017806 288 IQLQFDFH---RAIYNLGTV 304 (365)
Q Consensus 288 l~~~p~~~---~~~~~lg~~ 304 (365)
++..|... ...+||-..
T Consensus 313 ~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 313 VQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred hccCCccchhhhHHHHHHHH
Confidence 99999753 234444433
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.07 E-value=4.1e-06 Score=49.28 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 146 RYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 146 ~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
+|+++|+++|+++.+|+++|.+|...|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~ 28 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD 28 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence 4889999999999999999999999999
No 201
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=4.9e-05 Score=70.71 Aligned_cols=146 Identities=15% Similarity=0.027 Sum_probs=115.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH-HHhCCC--------CH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA-TRLCPT--------LH 206 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~ 206 (365)
...++..+..-.+.++....+.+.+++..+..++..|+ +..|.+.+-.. +...|. ..
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn--------------~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN--------------HPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------------hHHHHHHHHhcccccccCccccchhhhh
Confidence 34566666666667777777888999999999999999 99998877553 333333 34
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHhcCcchhHHhhh
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-----------WNSPQALNNWGLALQELSAIVPAREKQT 275 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 275 (365)
..|+|+|.+++. .|.|.-++.+|.+|+..+-.-+... .+..++.+|.|..|...|++
T Consensus 284 if~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP-------- 351 (696)
T KOG2471|consen 284 IFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP-------- 351 (696)
T ss_pred eeecCcceEeee----hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc--------
Confidence 568999999999 9999999988888875333323222 23568999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
-.|.++|.+++.....+|..|..|+.|+..-.
T Consensus 352 --l~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 352 --LLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred --HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986443
No 202
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=6.3e-05 Score=64.14 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLH----------DAFYNWAIAISDR 219 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~lg~~~~~~ 219 (365)
..++...|+-++..|+ |.+|+..|+.|+.+ .|..+ ..+.|...++..
T Consensus 178 v~~l~q~GN~lfk~~~--------------ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~- 242 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGR--------------YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK- 242 (329)
T ss_pred hHHHHHhhhhhhhhcc--------------HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-
Confidence 4567888888999998 99999999999754 34443 457788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
.|+|-+++ .+....+..+|++..+++.+|.+...-=+. .+|...|.++|+++|.-..+
T Consensus 243 ---~~e~yevl-------eh~seiL~~~~~nvKA~frRakAhaa~Wn~----------~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 243 ---KEEYYEVL-------EHCSEILRHHPGNVKAYFRRAKAHAAVWNE----------AEAKADLQKVLELDPSLASV 300 (329)
T ss_pred ---HHHHHHHH-------HHHHHHHhcCCchHHHHHHHHHHHHhhcCH----------HHHHHHHHHHHhcChhhHHH
Confidence 99999999 889999999999999999999999988886 99999999999999976544
No 203
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0014 Score=55.68 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=99.5
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCccccCCCCchhh
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP------EDYDALYNWALVLQESADNVSLDSTSPSKD 185 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~ 185 (365)
-.+++++|.++|.++-.. +-..+++..|=..|.++..+.- +-...+...+.+|.. .+
T Consensus 26 g~~k~eeAadl~~~Aan~----yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~------------ 88 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANM----YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VD------------ 88 (288)
T ss_pred CCcchHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cC------------
Confidence 445799999999988654 3334678888888888866531 124455666666655 46
Q ss_pred hHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
..+|+.++++++++..+.. ..+..+|.+|.. .+.+++.||..|++|-.+|..- +....--..+.-.+.
T Consensus 89 --~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae~yk~e-es~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 89 --PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAEYYKGE-ESVSSANKCLLKVAQ 162 (288)
T ss_pred --hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHHHHcch-hhhhhHHHHHHHHHH
Confidence 9999999999999876533 335577777765 1477777776666665555421 111111123333333
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
.-..+++ |.+|+..|+++....-++.-.-+.
T Consensus 163 yaa~leq----------Y~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 163 YAAQLEQ----------YSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHhccchHHHhH
Confidence 4444555 699999999999877666544333
No 204
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00012 Score=62.56 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
....+.|...|+...|+ |-++++++...+...|.|..+++.+|.+... .=+.++|.
T Consensus 229 ~tpLllNy~QC~L~~~e--------------~yevleh~seiL~~~~~nvKA~frRakAhaa----~Wn~~eA~------ 284 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEE--------------YYEVLEHCSEILRHHPGNVKAYFRRAKAHAA----VWNEAEAK------ 284 (329)
T ss_pred hhHHHHhHHHHHhhHHH--------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh----hcCHHHHH------
Confidence 45578899999999999 9999999999999999999999999999988 77788888
Q ss_pred HHHHHHHHhcCCCCHHHH
Q 017806 237 TKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~ 254 (365)
..|.++++++|.-..+.
T Consensus 285 -~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 285 -ADLQKVLELDPSLASVV 301 (329)
T ss_pred -HHHHHHHhcChhhHHHH
Confidence 88999999999765543
No 205
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0073 Score=52.36 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=111.1
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 191 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A 191 (365)
-..+|.+++.+|+.++..+... ..|++.-..+|.++|.+..+|..+-.++..++. .+.+-
T Consensus 38 Yte~fr~~m~YfRAI~~~~E~S-------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------------dL~~E 97 (318)
T KOG0530|consen 38 YTEDFRDVMDYFRAIIAKNEKS-------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------------DLNKE 97 (318)
T ss_pred echhHHHHHHHHHHHHhccccC-------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------------HHHHH
Confidence 3456677777777766655433 346666677777777777777777777666553 25666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchh
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK-EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~-~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 270 (365)
++++...++-+|.|..+|..+-.+... .|+.. .-+ .....++..+.++--+|..+-.+....+.++.-
T Consensus 98 l~~l~eI~e~npKNYQvWHHRr~ive~----l~d~s~rEL-------ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 98 LEYLDEIIEDNPKNYQVWHHRRVIVEL----LGDPSFREL-------EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHH----hcCcccchH-------HHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence 777777777777777777777666666 66555 222 455666666666666666666666666665322
Q ss_pred HH------------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 271 RE------------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 271 ~~------------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
.. .....+.-+.+..+.|.+.|+|-.+|..|.-++..
T Consensus 167 L~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 167 LAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 22 22455677888899999999999999999888775
No 206
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.98 E-value=1.5e-05 Score=46.85 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
+.+|+++|.++..+|+ +++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD--------------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC--------------chHHHHHHHHHHHHCcCC
Confidence 4689999999999999 999999999999999974
No 207
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=6.9e-05 Score=66.61 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
-+..-|+-|+...+ |..|+.+|.++|..... ++-+|+|++.+... .|+|..++
T Consensus 83 n~KeeGN~~fK~Kr--------------yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l----- 139 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKR--------------YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSAL----- 139 (390)
T ss_pred HHHHHhHHHHHhhh--------------HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHH-----
Confidence 35556777777777 99999999999997543 56679999999999 99999998
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
..+.+++.++|++..++++-+.|+..+.++ .+|..+++..++++-..
T Consensus 140 --~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~----------~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 140 --NDCSAALKLKPTHLKAYIRGAKCLLELERF----------AEAVNWCEEGLQIDDEA 186 (390)
T ss_pred --HHHHHHHhcCcchhhhhhhhhHHHHHHHHH----------HHHHHHHhhhhhhhHHH
Confidence 889999999999999999999999999996 99999999888776543
No 208
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.95 E-value=0.00096 Score=60.22 Aligned_cols=162 Identities=13% Similarity=0.116 Sum_probs=126.3
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------hhhhhhhHHHHHHHHHHHHHhCCCC------
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------GRSRQRILTFAAKRYANAIERNPED------ 157 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~A~~~~~~al~~~p~~------ 157 (365)
-+++.+++..+ +...++.+++.+....+.+... +....+.|+++++.|+.++++.-++
T Consensus 83 ~ea~lnlar~~-e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 83 LEAYLNLARSN-EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHH-HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 46788888888 6889999999999988877633 2344578999999999999975443
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHHHhcCCHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----------LHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
-.+...||.++..+.+ +++|.-+..+|.++-.. ...+.+.++.++.. +|+..
T Consensus 162 lqvcv~Lgslf~~l~D--------------~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~----~G~Lg 223 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKD--------------YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL----LGRLG 223 (518)
T ss_pred eehhhhHHHHHHHHHh--------------hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH----hcccc
Confidence 2367889999999999 99999999999987432 24567888999988 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.|.++.++|.+.--. ....+.++..+.-+|.+|...|+. +.|..-|++|...
T Consensus 224 dA~e~C~Ea~klal~-~Gdra~~arc~~~~aDIyR~~gd~----------e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 224 DAMECCEEAMKLALQ-HGDRALQARCLLCFADIYRSRGDL----------ERAFRRYEQAMGT 275 (518)
T ss_pred cHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHhcccH----------hHHHHHHHHHHHH
Confidence 999777666543211 111234667888899999999997 8999999998865
No 209
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.94 E-value=0.00037 Score=62.79 Aligned_cols=148 Identities=9% Similarity=-0.009 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------
Q 017806 137 QRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------ 205 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------ 205 (365)
.-++.+++.+.+-.+.+-..+ ..+...+|.++..++- |+++++.|++|+.+..++
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~--------------fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV--------------FQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH--------------HHHHHHHHHHHHHHhhccCCceee
Confidence 356677777766666653222 3456778888888888 999999999999985432
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN----SPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
..++..||.++.. +.++++|.-+..+|....+. +.++.- ..-+++.++.+|..+|+. -.|.
T Consensus 162 lqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s-~~l~d~~~kyr~~~lyhmaValR~~G~L----------gdA~ 226 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNS-YGLKDWSLKYRAMSLYHMAVALRLLGRL----------GDAM 226 (518)
T ss_pred eehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHh-cCcCchhHHHHHHHHHHHHHHHHHhccc----------ccHH
Confidence 3578899999999 99999999665555443332 222211 245778899999999997 8999
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHhhhhhh
Q 017806 282 SKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 282 ~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
++++++.++. +-++..+.-+|.+|-..|+.+.
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 9999998773 3446667778999988887664
No 210
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.92 E-value=0.0046 Score=64.71 Aligned_cols=194 Identities=6% Similarity=-0.082 Sum_probs=147.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh---h--------hhhh----hhhHHHHHHHHHHHHHhCCC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE---E--------GRSR----QRILTFAAKRYANAIERNPE 156 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~---~--------~~~~----~~~~~~A~~~~~~al~~~p~ 156 (365)
+-.+|+..-.|...=...+ +.++.++|...+++|+..-. . ++.. -|.-+.-.+.|++|.+.. +
T Consensus 1451 vrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d 1528 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D 1528 (1710)
T ss_pred HhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c
Confidence 3567777766655444443 88999999999999987651 1 1111 155556666777777653 2
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
-..+|..|.-+|..-+. +++|.+.|+..++........|..+|..+.. +.+-+.|.
T Consensus 1529 ~~~V~~~L~~iy~k~ek--------------~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~------ 1584 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEK--------------NDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAAR------ 1584 (1710)
T ss_pred hHHHHHHHHHHHHHhhc--------------chhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHH------
Confidence 34567888889999888 9999999999999988888999999999988 88777888
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 237 TKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 237 ~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
..+.+|++.-|+ +.+.....+.+-++.|+. +.+...|+-.+..+|.-...|.-+...-.+.|+....
T Consensus 1585 -~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa----------eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1585 -ELLKRALKSLPKQEHVEFISKFAQLEFKYGDA----------ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred -HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc----------hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 557777777777 788888899999999997 9999999999999999888888877777777765544
Q ss_pred hcCcCCCC
Q 017806 315 TGGTVNPR 322 (365)
Q Consensus 315 ~~~~~~~~ 322 (365)
...+..++
T Consensus 1654 R~lfeRvi 1661 (1710)
T KOG1070|consen 1654 RDLFERVI 1661 (1710)
T ss_pred HHHHHHHH
Confidence 44443333
No 211
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.91 E-value=1.9e-05 Score=46.46 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.+|+++|.++..+|++ ++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence 46899999999999996 99999999999999974
No 212
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.88 E-value=3.8e-05 Score=45.02 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
+.+|+.+|.++..+|+ +++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN--------------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCcCC
Confidence 4679999999999999 999999999999999985
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.86 E-value=0.00087 Score=63.07 Aligned_cols=183 Identities=19% Similarity=0.083 Sum_probs=119.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC-----------
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP----------- 203 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p----------- 203 (365)
.+..+.+.-++...+||+++|+.+++|..|+.-... . ..++...|+++++...
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~--T--------------i~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEAS--T--------------IVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc--C--------------HHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 345667888999999999999999999888763322 2 5566666666654311
Q ss_pred ------------C--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCc
Q 017806 204 ------------T--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAI 267 (365)
Q Consensus 204 ------------~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~ 267 (365)
. ...+...||.+..+ +|+.++|+ +.++..++.+|. +..+..+|-.++..++.+
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCark----lGr~~EAI-------k~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARK----LGRLREAI-------KMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHH----hCChHHHH-------HHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 0 12345678888888 99999999 779999988775 567999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCcc
Q 017806 268 VPAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 346 (365)
.++...+.+-=++ -|+.+...+.-+....+...+..... .+...........+...+.+|.+.+|.
T Consensus 312 ----------ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e---~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 312 ----------ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE---AASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred ----------HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch---hhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 8887777774322 24555555555444333221110000 001111111225567778899999998
Q ss_pred HHHHHHHHHhh
Q 017806 347 YSVYSSALRLV 357 (365)
Q Consensus 347 ~~~~~~al~~~ 357 (365)
-+.|.--.|-+
T Consensus 379 Vp~YLLe~K~L 389 (539)
T PF04184_consen 379 VPKYLLEMKSL 389 (539)
T ss_pred CchhhhccCCC
Confidence 88877655543
No 214
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.86 E-value=9.5e-06 Score=72.29 Aligned_cols=89 Identities=20% Similarity=0.166 Sum_probs=83.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..|.+++|+++|..+|+++|.....+..++.++..+++ ...||..|..+++++|+...-|-..|.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--------------p~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--------------PNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccC--------------CchhhhhhhhhhccCcccccccchhhHH
Confidence 34679999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
... +|+|.+|. ++++.+.+++-+
T Consensus 192 ~rl----lg~~e~aa-------~dl~~a~kld~d 214 (377)
T KOG1308|consen 192 ERL----LGNWEEAA-------HDLALACKLDYD 214 (377)
T ss_pred HHH----hhchHHHH-------HHHHHHHhcccc
Confidence 999 99999999 778888888754
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.85 E-value=0.0011 Score=53.40 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=83.2
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhh----hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQ----RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~ 187 (365)
..|+...++..+++++.+....+... .-.......+... ...+...++..+...|+
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~-------------- 77 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLREL------YLDALERLAEALLEAGD-------------- 77 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT---------------
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccC--------------
Confidence 56788889999999988876533222 1222333333332 34567888888999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+++|+..+++++.++|.+..+|..+-.++.. .|+..+|+..|++....+.+-+.+.|.
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 9999999999999999999999999999999 999999999999988888888888886
No 216
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=4.5e-05 Score=44.67 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.+|+.+|.++..+|++ ++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence 46899999999999996 99999999999999985
No 217
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.0013 Score=61.42 Aligned_cols=160 Identities=12% Similarity=0.082 Sum_probs=110.3
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
-+...|...|..= ..++++..|...|++|+..+.. .-++.+....|...+.+|+.+-|..-..|+-.-.
T Consensus 71 ~~~~~WikYaqwE-esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 71 LNMQVWIKYAQWE-ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3445555556555 4677777777777777776643 2344466777777777777777777777777777
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
+-..+|+ ...|.+.|++-++..|+. .+|...-..-.. -...+.|. ..|++-+-.
T Consensus 150 mEE~LgN--------------i~gaRqiferW~~w~P~e-qaW~sfI~fElR----ykeieraR-------~IYerfV~~ 203 (677)
T KOG1915|consen 150 MEEMLGN--------------IAGARQIFERWMEWEPDE-QAWLSFIKFELR----YKEIERAR-------SIYERFVLV 203 (677)
T ss_pred HHHHhcc--------------cHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH----hhHHHHHH-------HHHHHHhee
Confidence 7777777 777777777777777753 445554444444 55555665 668887777
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.|+ ...|...+..-.+.|+. .-|.+.|++|++.-.++
T Consensus 204 HP~-v~~wikyarFE~k~g~~----------~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 204 HPK-VSNWIKYARFEEKHGNV----------ALARSVYERAIEFLGDD 240 (677)
T ss_pred ccc-HHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHhhhH
Confidence 774 67788888888888875 88888888888765443
No 218
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00073 Score=66.86 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=83.3
Q ss_pred CChhHhhhcHHHHHHHHHHhhccChh--------hhhhhhhHHHHHHHHHHH----------HHhCC----------CCH
Q 017806 107 NTPHQLAEQNNAAMELINSVTGVDEE--------GRSRQRILTFAAKRYANA----------IERNP----------EDY 158 (365)
Q Consensus 107 ~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~ 158 (365)
..| +..|.+++|.++-+.--...-. -....+|.+.|+++|+++ |.-+| .+.
T Consensus 834 Kly-Qs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 834 KLY-QSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HHH-HhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence 344 4566666666554432222111 112236677777777754 22232 356
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---------------------CPTLHDAFYNWAIAIS 217 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~lg~~~~ 217 (365)
..|.+.|..+...|+ .+.|+.+|..|-.- ...+-.+.+.||..|.
T Consensus 913 ~L~~WWgqYlES~Ge--------------mdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGE--------------MDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHHHhcccc--------------hHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 788899999999999 89999988887532 3346678999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
. .|++.+|+..|.+| +.|..||++..
T Consensus 979 n----~g~v~~Av~FfTrA-qafsnAIRlcK 1004 (1416)
T KOG3617|consen 979 N----DGDVVKAVKFFTRA-QAFSNAIRLCK 1004 (1416)
T ss_pred h----hHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9 99999999999998 66888887753
No 219
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.81 E-value=0.0011 Score=50.08 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 186 ALLEEACKKYDEATRLCPT------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
|.|++|...|++++++... ++-++-.|+.++.. +|+|++++..-+.|+.+|++-=+++.+....
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 4499999999999987432 34578889999999 9999999999999999999998888776554
Q ss_pred ----HHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 254 ----LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 254 ----~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.++.+.++..+|+. ++|+..|+++.++
T Consensus 99 WIaaVfsra~Al~~~Gr~----------~eA~~~fr~agEM 129 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRK----------EEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHH
Confidence 45788999999996 9999999998765
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.80 E-value=0.00062 Score=64.04 Aligned_cols=177 Identities=15% Similarity=0.066 Sum_probs=111.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE--DYDALYNWALVLQ 169 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~ 169 (365)
++.+|+-+.+|..++.- ......+|.++|+++++.....+.+.. ..+....+-..+..... ...+...+|.|..
T Consensus 195 Lei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~-~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar 270 (539)
T PF04184_consen 195 LEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQ-FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR 270 (539)
T ss_pred HHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhh-hhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence 67788888888888742 334567888888888776655432211 11111111112211111 2456688999999
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL- 246 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~- 246 (365)
++|+ .++||+.|+..++..|. +..++.+|-.++.. .++|.++..+ +.+-=++
T Consensus 271 klGr--------------~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~l-------L~kYdDi~ 325 (539)
T PF04184_consen 271 KLGR--------------LREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQAL-------LAKYDDIS 325 (539)
T ss_pred HhCC--------------hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHH-------HHHhcccc
Confidence 9999 99999999999988775 56789999999999 9999999844 3332111
Q ss_pred CCCCHHHHHHHHHHHHHh-cCc--chhHHhhh---HHHHHHHHHHHHHHhCCCCHHH
Q 017806 247 NWNSPQALNNWGLALQEL-SAI--VPAREKQT---IVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~-~~~--~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~ 297 (365)
-|+++...+..+.+..+. ++. .++..+.| .-..|++...+|++.||.-+.-
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 255666655555544331 111 00001111 1245788999999999987653
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0004 Score=60.01 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
.+.+.+..++.-+++ |.-....+.+.++.+ |..+.....||.+-.+ .|+.+.|..+|+...
T Consensus 178 ~Vmy~~~~~llG~kE--------------y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKE--------------YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHHHhcchh--------------hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHH
Confidence 355677777777788 999999999999998 6689999999999999 999999996655443
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+.-.+. .--...--+..+.+.++.-.+++ ..|...|.+.+..||.++.+.++.+.|+..+|+...++..
T Consensus 240 k~~~kL-~~~q~~~~V~~n~a~i~lg~nn~----------a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 240 KVTQKL-DGLQGKIMVLMNSAFLHLGQNNF----------AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHhhh-hccchhHHHHhhhhhheecccch----------HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 322221 11123445666777777777775 9999999999999999999999999999999988777665
Q ss_pred cCCCCCCCcc
Q 017806 318 TVNPREVSPN 327 (365)
Q Consensus 318 ~~~~~~~~~~ 327 (365)
...+....|.
T Consensus 309 ~e~~~~~~P~ 318 (366)
T KOG2796|consen 309 LEAMVQQDPR 318 (366)
T ss_pred HHHHhccCCc
Confidence 5444444444
No 222
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00027 Score=62.92 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=76.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 131 EEGRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
++-++..++|..|+.+|.++|+..-.+ ...|.|++.+...+|+ |..|+..+.+++.++|++.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--------------yRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--------------YRSALNDCSAALKLKPTHL 153 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHhcCcchh
Confidence 345677889999999999999976444 5578999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+++.-+.++.. +.++.+|....+.
T Consensus 154 Ka~~R~Akc~~e----Le~~~~a~nw~ee 178 (390)
T KOG0551|consen 154 KAYIRGAKCLLE----LERFAEAVNWCEE 178 (390)
T ss_pred hhhhhhhHHHHH----HHHHHHHHHHHhh
Confidence 999999999999 9999999854433
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.68 E-value=0.0018 Score=58.48 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
.+..+.|...|.++++..+....+|...|.+-+.. ++ .+.|...|+.+++..|.+...|......
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d--------------~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD--------------PKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS---------------HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34588899999999866666788899999987774 55 6669999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
+.. .|+.+.+. ..|++++..-|... .+|..+...-...|+. +...+.++++.+.-|
T Consensus 80 l~~----~~d~~~aR-------~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl----------~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 80 LIK----LNDINNAR-------ALFERAISSLPKEKQSKKIWKKFIEFESKYGDL----------ESVRKVEKRAEELFP 138 (280)
T ss_dssp HHH----TT-HHHHH-------HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H----------HHHHHHHHHHHHHTT
T ss_pred HHH----hCcHHHHH-------HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhh
Confidence 999 99999998 66777776655543 6888888888888886 899999999999988
Q ss_pred CCHHHH
Q 017806 293 DFHRAI 298 (365)
Q Consensus 293 ~~~~~~ 298 (365)
++....
T Consensus 139 ~~~~~~ 144 (280)
T PF05843_consen 139 EDNSLE 144 (280)
T ss_dssp TS-HHH
T ss_pred hhhHHH
Confidence 855443
No 224
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.67 E-value=0.0083 Score=58.20 Aligned_cols=171 Identities=12% Similarity=0.116 Sum_probs=128.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhcc-Chh---------------hhhhhhhHHHHHHHHHHHHHhCC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGV-DEE---------------GRSRQRILTFAAKRYANAIERNP 155 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~-~~~---------------~~~~~~~~~~A~~~~~~al~~~p 155 (365)
+..+|.+++-|..+-.++ .|+..+-+..|..|+.. +|. -+...|+++.|...|+++.+.+=
T Consensus 342 LRQn~~nV~eW~kRV~l~---e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY---EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhhhh---cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 678999999998877654 57888888889888764 443 13345999999999999999753
Q ss_pred -C---CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------------------CHHHHHHHH
Q 017806 156 -E---DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------------------LHDAFYNWA 213 (365)
Q Consensus 156 -~---~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~lg 213 (365)
. -..+|.+.|..-....+ ++.|..+.++|...-.. +..+|..+
T Consensus 419 ~~v~dLa~vw~~waemElrh~~--------------~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y- 483 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHEN--------------FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY- 483 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH-
Confidence 2 25678888877777777 99999999999865222 12234433
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-- 291 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-- 291 (365)
-+++++...|+..-..|.+.+.+.--.|....|.|..+....-+ +++.+.|++.+.+.
T Consensus 484 ----------~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----------eesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 484 ----------ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----------EESFKAYERGISLFKW 543 (835)
T ss_pred ----------HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----------HHHHHHHHcCCccCCC
Confidence 34555555555555889999998888899999999999888775 99999999999885
Q ss_pred CCCHHHHHH
Q 017806 292 FDFHRAIYN 300 (365)
Q Consensus 292 p~~~~~~~~ 300 (365)
|.-.++|..
T Consensus 544 p~v~diW~t 552 (835)
T KOG2047|consen 544 PNVYDIWNT 552 (835)
T ss_pred ccHHHHHHH
Confidence 444455554
No 225
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.63 E-value=0.013 Score=56.87 Aligned_cols=158 Identities=15% Similarity=0.075 Sum_probs=122.1
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHhCCC---------
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIERNPE--------- 156 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~~p~--------- 156 (365)
..|...|..| ...|+.+.|...|++++...=. .-.+..+++.|+++.+++...-..
T Consensus 388 ~Lw~~faklY-e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLY-ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHH-HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 5688889999 6999999999999999987622 134457899999999988765211
Q ss_pred ---------CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 157 ---------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 157 ---------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
....|...+......|- ++.....|++.+.+.--.+....|.|..+.. ..-++
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gt--------------festk~vYdriidLriaTPqii~NyAmfLEe----h~yfe 528 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGT--------------FESTKAVYDRIIDLRIATPQIIINYAMFLEE----HKYFE 528 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hHHHH
Confidence 24467777888888888 9999999999999998899999999999988 88888
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH-HH-hcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 228 EAEELWKQATKNYEKAVQLN--WNSPQALNNWGLAL-QE-LSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~-~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
++. +.|++.+.+. |+-.++|+.+=.-. .+ .|.. .+.|..+|++||+..|
T Consensus 529 esF-------k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k---------lEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 529 ESF-------KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK---------LERARDLFEQALDGCP 581 (835)
T ss_pred HHH-------HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHhcCC
Confidence 888 7777777765 55566666432222 22 2322 5899999999999876
No 226
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0024 Score=54.39 Aligned_cols=128 Identities=15% Similarity=0.074 Sum_probs=88.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDA------LYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL- 205 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~- 205 (365)
.++..+..+|+.++++++++..+.... +..+|.+|... .+ +++||.+|+++-+-....
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d--------------~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQD--------------FEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHH--------------HHHHHHHHHHHHHHHcchh
Confidence 456678999999999999987655443 34778887764 66 999999999998764331
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCcchhHHh
Q 017806 206 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREK 273 (365)
Q Consensus 206 -----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~~~~ 273 (365)
..++...+..-.. .++|.+|+ ..|++.....-++ -..++.-|.|++-..+.
T Consensus 149 s~ssANKC~lKvA~yaa~----leqY~~Ai-------~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~------ 211 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQ----LEQYSKAI-------DIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADE------ 211 (288)
T ss_pred hhhhHHHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccH------
Confidence 2334444444455 66677776 6666665443333 24556678888887775
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHH
Q 017806 274 QTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 274 ~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
-.+...+++-.+++|....
T Consensus 212 ----v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 212 ----VNAQRALEKYQELDPAFTD 230 (288)
T ss_pred ----HHHHHHHHHHHhcCCcccc
Confidence 6777788888889997754
No 227
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.62 E-value=0.0028 Score=63.37 Aligned_cols=106 Identities=20% Similarity=0.079 Sum_probs=95.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..+++.+|.+...+.++..|+-.-+...-|.++.++|+ +++|..+++..-...+++-..+-.+-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk--------------~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK--------------GDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC--------------chhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 34789999999999999999999999999999999999 9999988888777788888899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
|.. +|++++|. ..|+++++.+|+ -..++.+=.+|.+.+.+
T Consensus 87 y~d----~~~~d~~~-------~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 87 YRD----LGKLDEAV-------HLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHH----HhhhhHHH-------HHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 999 99999999 779999999999 78888888888887775
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.59 E-value=0.0058 Score=56.60 Aligned_cols=114 Identities=13% Similarity=-0.042 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hcCccccCCCCchhhhHHHHHHHHHHHHH-HhCCCCHHH
Q 017806 137 QRILTFAAKRYANAIER----NPEDYDALYNWALVLQE---SADNVSLDSTSPSKDALLEEACKKYDEAT-RLCPTLHDA 208 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~~~~~~a~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~ 208 (365)
.++|+.=+...+..-.+ -+....+.+..|.++.+ .|+ .++|+..+..++ ...+.+++.
T Consensus 154 iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd--------------re~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 154 IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD--------------REKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC--------------HHHHHHHHHHHHhccCCCChHH
Confidence 36777777777665555 35567778899999998 777 999999999954 456778999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+..+|.+|.+.+...+.- -.+.+++|+.+|.++.+++|+. ..-.|++.++...|..
T Consensus 220 ~gL~GRIyKD~~~~s~~~--d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFT--DRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCc
Confidence 999999998744332221 2334888899999999999654 4455677777776654
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0033 Score=56.67 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE-AEELWKQATK 238 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~-A~~~~~~A~~ 238 (365)
+|..+.....+.+. .+.|...|.+|++..+....+|...|.+... .++-.+ |. +
T Consensus 3 v~i~~m~~~~r~~g--------------~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~-------~ 57 (280)
T PF05843_consen 3 VWIQYMRFMRRTEG--------------IEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRAR-------K 57 (280)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHH-------H
T ss_pred HHHHHHHHHHHhCC--------------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHH-------H
Confidence 56666777777777 9999999999997777788999999999776 554444 88 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhhh
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAED 311 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~ 311 (365)
.|+.+++..|.+...|..+...+...++. +.|...|++++..-|... .+|......-...|+.
T Consensus 58 Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 58 IFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence 78888888899999999999999999996 999999999998876654 4555555555555533
No 230
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.54 E-value=2.4e-05 Score=69.84 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+++||++|.++|.++|..+..+..++.++.. +++...|+ +.|..+++++|+.+.-|-..|.+..-+|++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~ai-------rD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAI-------RDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeee----ccCCchhh-------hhhhhhhccCcccccccchhhHHHHHhhch
Confidence 9999999999999999999999999999999 99999999 889999999999999999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
++|..++..+.+++-+
T Consensus 199 ----------e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 ----------EEAAHDLALACKLDYD 214 (377)
T ss_pred ----------HHHHHHHHHHHhcccc
Confidence 9999999999988643
No 231
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0049 Score=61.31 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=101.8
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhh--hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSR--QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE 189 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~ 189 (365)
.+|-.++|..+|++.-..+-...+. +|.+++|.+..+.--+++ --..|++.+.-+...++ .+
T Consensus 812 eLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D--------------i~ 875 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD--------------IE 875 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc--------------HH
Confidence 6677777777777766655443322 245555544333211111 13457788888888888 88
Q ss_pred HHHHHHHHHH----------HhCC----------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH------
Q 017806 190 EACKKYDEAT----------RLCP----------TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA------ 243 (365)
Q Consensus 190 ~A~~~~~~al----------~~~p----------~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a------ 243 (365)
.|+++|+++- .-+| .+...|.-.|..+.. .|+.+.|+.+|+.|-.+|..+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAALSFYSSAKDYFSMVRIKCIQ 951 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHHHHHHHHhhhhhhheeeEeec
Confidence 8888888762 2233 255678888999999 999999999999998777632
Q ss_pred --------HhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 244 --------VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 244 --------l~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
|.....+..+-+.+|..|...|+. .+|+..|.+|-.+
T Consensus 952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v----------~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDKAACYHLARMYENDGDV----------VKAVKFFTRAQAF 996 (1416)
T ss_pred cCchHHHHHHHhcccHHHHHHHHHHhhhhHHH----------HHHHHHHHHHHHH
Confidence 233456777888899999998886 8898888876543
No 232
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.49 E-value=0.011 Score=53.66 Aligned_cols=171 Identities=23% Similarity=0.199 Sum_probs=120.3
Q ss_pred hhhcHHHHHHHHHHhhccChh------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE------------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~ 179 (365)
..+.+..++.++..+-..... +.....+..+|+..|..+. ...++.+.+.||.+|..-.-
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g------ 124 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG------ 124 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC------
Confidence 667777888888777653211 1222367899999999544 46788899999999987220
Q ss_pred CCchhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 180 TSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIAISDRAKMRGRTKEAE-ELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~g~~~~A~-~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
...++.+|..+|+++.+..-.. ..+.+.+|.++.. -. ...++ ....+|+..|.++-... ++.+.+++
T Consensus 125 ----v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~----g~-~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~l 193 (292)
T COG0790 125 ----VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS----GL-QALAVAYDDKKALYLYRKAAELG--NPDAQLLL 193 (292)
T ss_pred ----cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc----Ch-hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHH
Confidence 0012999999999999875433 3558889988876 32 22122 12346778888887765 88999999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
|.+|..-.- -..++.+|+.+|.++.+... ..+.++++ ++...|.
T Consensus 194 g~~y~~G~G------v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 194 GRMYEKGLG------VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHHHcCCC------CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 988866311 12346999999999998876 88999999 7777773
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.47 E-value=0.0043 Score=60.15 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=115.4
Q ss_pred hhcHHHHHHHHHHhhccChh-------------------hhh--hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 113 AEQNNAAMELINSVTGVDEE-------------------GRS--RQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~-------------------~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
.|+-+.++..+.++.....- .-. ...+.+.|.+.+....+..|+..-.++..|.++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 47888889888888774321 011 345788899999999999999999999999999999
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
|+ .++|++.|++++..... ..-+++.+|.++.. +++|++|. .+|.+.++.+
T Consensus 281 g~--------------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~-------~~f~~L~~~s 335 (468)
T PF10300_consen 281 GN--------------LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAA-------EYFLRLLKES 335 (468)
T ss_pred cC--------------HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHH-------HHHHHHHhcc
Confidence 99 99999999999854332 45678999999999 99999999 7788888765
Q ss_pred CC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 248 WN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 248 p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.- .+...+..|.|+...++. .......++|..+|.++-.+
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~---~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGRE---EEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccc---hhhhhhHHHHHHHHHHHHHH
Confidence 43 455667788899999984 11112226777777776655
No 234
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.42 E-value=0.0055 Score=64.11 Aligned_cols=163 Identities=10% Similarity=0.025 Sum_probs=133.0
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE 170 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 170 (365)
-+++++-+.| |.-+.-.+.|++|-+.... .|...+.+++|.+.|+..++.+.+....|..+|..+..
T Consensus 1501 iA~lNlEn~y----G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1501 IAYLNLENAY----GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHhHHHhh----CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 3444444333 4555556667776665431 24445889999999999999999889999999999999
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
..+ -+.|...+.+|++.-|. +.+.....+.+.++ .|+-+.+. ..|+-.+...|
T Consensus 1577 ~ne--------------~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk----~GDaeRGR-------tlfEgll~ayP 1631 (1710)
T KOG1070|consen 1577 QNE--------------AEAARELLKRALKSLPKQEHVEFISKFAQLEFK----YGDAERGR-------TLFEGLLSAYP 1631 (1710)
T ss_pred ccH--------------HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh----cCCchhhH-------HHHHHHHhhCc
Confidence 988 89999999999999998 88999999999999 99999998 67899999999
Q ss_pred CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 017806 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--FDFHRAIYNL 301 (365)
Q Consensus 249 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 301 (365)
+-.+.|+.+...-.+.|+. +-....|++++.+. |.....++..
T Consensus 1632 KRtDlW~VYid~eik~~~~----------~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1632 KRTDLWSVYIDMEIKHGDI----------KYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred cchhHHHHHHHHHHccCCH----------HHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 9999999999999999987 99999999999875 4444444433
No 235
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.37 E-value=0.00033 Score=40.91 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.+|+.+|.+|..+|++ ++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence 36899999999999996 99999999999999854
No 236
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.36 E-value=0.0058 Score=45.95 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=86.4
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
++.-++..|+ +-+|++..+..+...+++. ..+..-|.++...+....+.+--..++..++.+|
T Consensus 2 ~A~~~~~rGn--------------hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~ 67 (111)
T PF04781_consen 2 KAKDYFARGN--------------HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECF 67 (111)
T ss_pred hHHHHHHccC--------------HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHH
Confidence 3455677777 9999999999999988765 6677889999988888888888888899999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.++..+.|..+..++.+|.-+.-..- |++++.-.+++|..
T Consensus 68 s~a~~Lsp~~A~~L~~la~~l~s~~~----------Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 68 SRAVELSPDSAHSLFELASQLGSVKY----------YKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhccChhHHHHHHHHHHHhhhHHH----------HHHHHHHHHHHhcc
Confidence 99999999998888888877655554 58888888888865
No 237
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.33 E-value=0.00065 Score=59.97 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHH
Q 017806 115 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194 (365)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~ 194 (365)
+..+|+..++.+... .++|..++|...|+.++.++|++++++..+|.......+ .-+|-.+
T Consensus 112 ~~kEA~~Al~~A~~~-----~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~--------------iv~ADq~ 172 (472)
T KOG3824|consen 112 KVKEAILALKAAGRS-----RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE--------------IVEADQC 172 (472)
T ss_pred hhHHHHHHHHHHHHH-----HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh--------------hHhhhhh
Confidence 355666666666543 456789999999999999999999999999999999888 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 017806 195 YDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 195 ~~~al~~~p~~~~~~~~lg~~ 215 (365)
|-+|+.++|.+.+++.++...
T Consensus 173 Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 173 YVKALTISPGNSEALVNRART 193 (472)
T ss_pred hheeeeeCCCchHHHhhhhcc
Confidence 999999999999998886654
No 238
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.32 E-value=0.00045 Score=40.34 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
.+|+.+|.++..+|+ +++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~--------------~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD--------------YEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTS--------------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Confidence 579999999999999 999999999999999853
No 239
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.00045 Score=64.54 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-L--------CP---------TLHDAFYNWAIAISDR 219 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~lg~~~~~~ 219 (365)
...|+++|.+++++|. |.-++.+|.+|++ . .| ....+.||+|..|..
T Consensus 283 cif~NNlGcIh~~~~~--------------y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh- 347 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGC--------------YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH- 347 (696)
T ss_pred heeecCcceEeeehhh--------------HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-
Confidence 3457999999999999 9999999999995 1 11 246789999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
.|+.-.|. ++|.+++...-.+|..|.+++.|...-
T Consensus 348 ---~grPl~Af-------qCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 348 ---SGRPLLAF-------QCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ---cCCcHHHH-------HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999 555555555556889999999987653
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.007 Score=54.30 Aligned_cols=118 Identities=18% Similarity=0.001 Sum_probs=98.1
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
-+.+.+..|+ +.+|...+++.+.-.|.+..++..--.+++. +|+...-. ..+++.
T Consensus 109 ~aai~~~~g~--------------~h~a~~~wdklL~d~PtDlla~kfsh~a~fy----~G~~~~~k-------~ai~kI 163 (491)
T KOG2610|consen 109 KAAILWGRGK--------------HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY----NGNQIGKK-------NAIEKI 163 (491)
T ss_pred hHHHhhcccc--------------ccHHHHHHHHHHHhCchhhhhhhhhhhHHHh----ccchhhhh-------hHHHHh
Confidence 3455566677 9999999999999999999999888888888 99988888 668888
Q ss_pred Hhc-CCCC---HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 244 VQL-NWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 244 l~~-~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
+-. +++. ..+.-.++-.+.+.|-+ ++|.+.-++++++++.+..+...++.++...|+..+...
T Consensus 164 ip~wn~dlp~~sYv~GmyaFgL~E~g~y----------~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 164 IPKWNADLPCYSYVHGMYAFGLEECGIY----------DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred ccccCCCCcHHHHHHHHHHhhHHHhccc----------hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence 765 6655 44555677788888885 999999999999999999999999999999887766544
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.006 Score=54.74 Aligned_cols=118 Identities=14% Similarity=0.015 Sum_probs=96.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-CCCC---HHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTL---HDAFY 210 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~ 210 (365)
...|++.+|...+.+.|...|.+--++..--.+++.+|+ ...-...+++.+-. +++- .-+.-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~--------------~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN--------------QIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc--------------hhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 445788888888999999999998888888888999998 88888899998877 5554 44445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
.++..+.. .|-|++|. +.-++++++|+.+..+...++.++...+++ .++.+...+.
T Consensus 180 myaFgL~E----~g~y~dAE-------k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~----------Keg~eFM~~t 235 (491)
T KOG2610|consen 180 MYAFGLEE----CGIYDDAE-------KQADRALQINRFDCWASHAKAHVLEMNGRH----------KEGKEFMYKT 235 (491)
T ss_pred HHHhhHHH----hccchhHH-------HHHHhhccCCCcchHHHHHHHHHHHhcchh----------hhHHHHHHhc
Confidence 56666667 89999999 778999999999999999999999999996 7777776654
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.12 Score=44.62 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----CCCCH
Q 017806 138 RILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPTLH 206 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 206 (365)
++|++|..++.++++-..++. .++-..|.+...+.. +.++..+|++|..+ .|+.+
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k--------------lsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK--------------LSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHhCCcchH
Confidence 445566666665554333221 122333444444555 66666666666655 22222
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
..-...+--... .-+.++|+++|++++..++.-=+ +..-.+.+...+++|.+...+
T Consensus 111 AmaleKAak~le----nv~Pd~AlqlYqralavve~~dr-~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 111 AMALEKAAKALE----NVKPDDALQLYQRALAVVEEDDR-DQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhccch-HHHHHHHHHHhhhHhhhhHHh
Confidence 211122222222 45566666555444443332100 001123444455556666554
No 243
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.16 E-value=0.014 Score=57.80 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhccChh------------h-hhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCcccc
Q 017806 116 NNAAMELINSVTGVDEE------------G-RSRQRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSL 177 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~------------~-~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~a 177 (365)
...|..+|+.+....-. + +-..+|.+.|+.+|+.+.+. .-.++.+.+.+|.+|....-...
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~- 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK- 306 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc-
Confidence 45677777776665522 1 23346888899988888771 11256688999999998542000
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 178 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 178 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
. ++..|..+|.++-... ++++.+.+|.++.. -. ..+.+.+|.++|..|... .+..+.+++
T Consensus 307 ------~--d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~----g~----~~~d~~~A~~yy~~Aa~~--G~~~A~~~l 366 (552)
T KOG1550|consen 307 ------I--DYEKALKLYTKAAELG--NPDAQYLLGVLYET----GT----KERDYRRAFEYYSLAAKA--GHILAIYRL 366 (552)
T ss_pred ------c--cHHHHHHHHHHHHhcC--CchHHHHHHHHHHc----CC----ccccHHHHHHHHHHHHHc--CChHHHHHH
Confidence 0 2889999999998765 67789999999976 33 223344555889888754 688999999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
|.||..-.-. ..+...|..+|+++.+.+ ++.+.+.++..+..
T Consensus 367 a~~y~~G~gv------~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 367 ALCYELGLGV------ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHHHhCCCc------CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHH
Confidence 9999874221 233599999999999987 46666666655543
No 244
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.12 E-value=0.16 Score=46.81 Aligned_cols=92 Identities=20% Similarity=0.006 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------------
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-------------------------------- 235 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~-------------------------------- 235 (365)
.+.|+.+-+++....|.-+-++...-..... .|+|+.|+++.+.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~----~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCA----AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHh----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 5556666666666666555555544444445 5666666655332
Q ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 236 --ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 236 --A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
|...-..++++.|+...+-..-+.+|++.|+. .++-..++.+-+..|.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~----------rKg~~ilE~aWK~ePH 295 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNL----------RKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccch----------hhhhhHHHHHHhcCCC
Confidence 45677788899999999999999999999997 7777777777766663
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.07 E-value=0.025 Score=54.89 Aligned_cols=154 Identities=14% Similarity=-0.014 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
||-+.+++.+.++.+ .++.-..+-.+..+.+...- ..-.+... .....+.|.+.+.......|+..-..+..|.++.
T Consensus 202 gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~-~~~~~~~~-~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 202 GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVV-PSFLGIDG-EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHH-HHHcCCcc-cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 888999999999887 33332222222222221110 00000000 2234889999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-CHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHR 296 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 296 (365)
. .|+.++|++.|++|+..-..- ..-..-.++.+|.++.-+.++ ++|..+|.+.++.+.- .+.
T Consensus 279 ~----~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w----------~~A~~~f~~L~~~s~WSka~ 341 (468)
T PF10300_consen 279 L----KGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDW----------EEAAEYFLRLLKESKWSKAF 341 (468)
T ss_pred H----hcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchH----------HHHHHHHHHHHhccccHHHH
Confidence 9 999999996655544211111 111356788999999999996 9999999999986543 234
Q ss_pred HHHHHHHHHHHhhhh
Q 017806 297 AIYNLGTVLYGLAED 311 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~ 311 (365)
-.+..|.|+..+|+.
T Consensus 342 Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 342 YAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHhhccc
Confidence 455678888888877
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.019 Score=47.68 Aligned_cols=139 Identities=13% Similarity=-0.003 Sum_probs=96.7
Q ss_pred hcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHH
Q 017806 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~ 190 (365)
++..+|-..|.+++..-... .. +.+...++...-++... -+-..++..+...++ +++
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak-----~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------------~d~ 107 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAK-----KP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN--------------LDK 107 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcC-----Cc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc--------------HHH
Confidence 34447777777776543211 11 44444555555554442 234567778888898 999
Q ss_pred HHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcC
Q 017806 191 ACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSA 266 (365)
Q Consensus 191 A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~ 266 (365)
|+..++.++....+. .-+-.+|+.+... +|.+++|+ +.+.... ++.. +...-..|.++...|+
T Consensus 108 A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL-------~~L~t~~--~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 108 AEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAAL-------KTLDTIK--EESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHH-------HHHhccc--cccHHHHHHHHhhhHHHHcCc
Confidence 999999998765442 4567889999999 99999999 5455432 1222 2345578999999999
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
. ++|+..|+++++.+++.+
T Consensus 175 k----------~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 175 K----------QEARAAYEKALESDASPA 193 (207)
T ss_pred h----------HHHHHHHHHHHHccCChH
Confidence 8 999999999999985543
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.045 Score=47.15 Aligned_cols=176 Identities=14% Similarity=0.037 Sum_probs=105.7
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh--------------h--hhhhhHHHHHHHHHHHHHhC-----CCCH
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG--------------R--SRQRILTFAAKRYANAIERN-----PEDY 158 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~--~~~~~~~~A~~~~~~al~~~-----p~~~ 158 (365)
..+..-++.+ ....++++|...+.+++.-..+. . -....+.++..+|+++..+. |+-+
T Consensus 32 s~yekAAvaf-RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 32 SLYEKAAVAF-RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3344445556 57888999998888887544331 0 11245666666666666653 2222
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
..-...+.=....-+ .++|+..|++++.+-.. -.+.+...++++.. ..+|.+|-..
T Consensus 111 AmaleKAak~lenv~--------------Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a 172 (308)
T KOG1585|consen 111 AMALEKAAKALENVK--------------PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATA 172 (308)
T ss_pred HHHHHHHHHHhhcCC--------------HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHH
Confidence 111111111222233 89999999999887433 24567778888888 8999998855
Q ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 017806 233 WKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFDFHRAIYNLGTVLY 306 (365)
Q Consensus 233 ~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~ 306 (365)
+.+-..+ +++.+ ++-...+...-.+|....+ |..|..+|+..-++ .|++..+..+|-..|-
T Consensus 173 ~lKe~~~---~~~~~~y~~~~k~~va~ilv~L~~~D----------yv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 173 FLKEGVA---ADKCDAYNSQCKAYVAAILVYLYAHD----------YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred HHHhhhH---HHHHhhcccHHHHHHHHHHHHhhHHH----------HHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 4433222 23333 2223344444455555556 59999999997766 4667778888766654
Q ss_pred H
Q 017806 307 G 307 (365)
Q Consensus 307 ~ 307 (365)
.
T Consensus 240 ~ 240 (308)
T KOG1585|consen 240 E 240 (308)
T ss_pred c
Confidence 3
No 248
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.01 E-value=0.031 Score=56.26 Aligned_cols=105 Identities=17% Similarity=0.091 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+++..|...+.+.+...|+...+...-|.++.+ +|+.++|. .+++..-...+++-..+--+-.+|..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~-------~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEAL-------KLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHH-------HHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 459999999999999999999999999999999 99999999 6677766667788889999999999999
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
+. ++|..+|++++..+|+ -+....+=.+|.+.++..
T Consensus 92 ~~----------d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 92 KL----------DEAVHLYERANQKYPS-EELLYHLFMAYVREKSYK 127 (932)
T ss_pred hh----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHH
Confidence 97 9999999999999999 777777878887777543
No 249
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.97 E-value=0.036 Score=44.51 Aligned_cols=81 Identities=23% Similarity=0.153 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 188 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
...++..+++++.+.... ..+...++..+.. .|++++|+ ..+++++.
T Consensus 22 ~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~----~~~~~~a~-------~~~~~~l~ 90 (146)
T PF03704_consen 22 PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE----AGDYEEAL-------RLLQRALA 90 (146)
T ss_dssp HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHH-------HHHHHHHh
Confidence 788888888888763221 2334456666666 88999888 88999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 246 ~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
.+|.+-.+|..+-.+|...|+. .+|++.|++...
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYRR 124 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHH
Confidence 9999999999999999999997 888888887654
No 250
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.013 Score=55.24 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
...=...|++|+...+.+...|.+......+ .+.+.+-- +.|.+++..+|++++.|..-+...+..+..
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk----~~~~~~v~-------ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKK----KKTYGEVK-------KIFAAMLAKHPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCchhHHhhhhhHHhhccc
Confidence 3445678999999999999999998877777 77777777 789999999999999999999999998884
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
.+.|...|.++|+.+|+++..|..
T Consensus 156 ---------i~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 156 ---------IESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred ---------hHHHHHHHHHHhhcCCCChHHHHH
Confidence 599999999999999999887654
No 251
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.85 E-value=0.0044 Score=59.36 Aligned_cols=98 Identities=22% Similarity=0.202 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 188 LEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
...|+.|+..|+...|... -...+|+.++.. -|-...|. ..+.+++.++...+-.++.+|..+..+.+
T Consensus 623 ~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~-------~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 623 STFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDAT-------KLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHH-------HHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 9999999999999998743 357899999999 88888888 66888888888889999999999999999
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
. +.|++.|++|+.++|+++.....|-.+-+
T Consensus 692 i----------~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 I----------SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred h----------HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 7 99999999999999999998888766655
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.072 Score=47.29 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--- 235 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~--- 235 (365)
+.-+.-+.-....|+ +.+|...|..++...|++.++...++.+|.. .|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~--------------~~~a~~~~~~al~~~~~~~~~~~~la~~~l~----~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 135 EEALAEAKELIEAED--------------FGEAAPLLKQALQAAPENSEAKLLLAECLLA----AGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHhhhhhhccc--------------hhhHHHHHHHHHHhCcccchHHHHHHHHHHH----cCChHHHHHHHHhCcc
Confidence 344555666677788 9999999999999999999999999999999 9999999877543
Q ss_pred -----------H-------------HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 236 -----------A-------------TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 236 -----------A-------------~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
| +..+++.+..||++.++-+.++..|...|+. ++|.+.+-..+..+
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~----------e~Ale~Ll~~l~~d 266 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRN----------EAALEHLLALLRRD 266 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence 1 2445555667899999999999999999986 88888888777765
Q ss_pred C--CCHHHHHHHHHHHHHhh
Q 017806 292 F--DFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 292 p--~~~~~~~~lg~~~~~~g 309 (365)
- .+..+...|-.++...|
T Consensus 267 ~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 267 RGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred ccccCcHHHHHHHHHHHhcC
Confidence 3 33455555555555555
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.82 E-value=0.0033 Score=36.13 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
++++.+|.++...|+ +++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~--------------~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGD--------------YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCH--------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCcCC
Confidence 478999999999999 999999999999999974
No 254
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.80 E-value=0.42 Score=44.16 Aligned_cols=192 Identities=17% Similarity=0.032 Sum_probs=107.7
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------hhh----hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------GRS----RQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..+-++.+-++..+ ..|+++.|..-|+.-+..-.. |.+ +.|+.+.|+.+-+++-...|.-+.++...-.
T Consensus 118 qepLIhlLeAQaal-~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 118 QEPLIHLLEAQAAL-LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred chHHHHHHHHHHHH-hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 44556666666663 777788777777765543322 222 2377777777777777777776666555544
Q ss_pred HHHHhcCccccCCC-------------C--------------chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 167 VLQESADNVSLDST-------------S--------------PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 167 ~~~~~~~~~~a~~~-------------~--------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
.....|++..+... . .........|...-.++.++.|+...+-..-+.+++.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~- 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR- 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-
Confidence 45555552222000 0 0000124555566666666777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH---HHHhCCCCHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA---AIQLQFDFHR 296 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~---al~~~p~~~~ 296 (365)
.|+..++- +.++.+.+.+| +++++ .+|.+...- +.++.-+++ ...+.|+|.+
T Consensus 276 ---d~~~rKg~-------~ilE~aWK~eP-HP~ia----~lY~~ar~g----------dta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 276 ---DGNLRKGS-------KILETAWKAEP-HPDIA----LLYVRARSG----------DTALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred ---ccchhhhh-------hHHHHHHhcCC-ChHHH----HHHHHhcCC----------CcHHHHHHHHHHHHhcCccchH
Confidence 88888887 55666666666 34433 233332221 233333333 2344666666
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 017806 297 AIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~~~a~ 315 (365)
....++..-+.-|+...+.
T Consensus 331 s~~~va~aAlda~e~~~AR 349 (531)
T COG3898 331 SSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHHHHHHHHhccchHHHH
Confidence 6666666666666554443
No 255
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.77 E-value=0.035 Score=47.81 Aligned_cols=102 Identities=19% Similarity=0.116 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHHH
Q 017806 188 LEEACKKYDEATRL----CPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQAL 254 (365)
Q Consensus 188 ~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~------~~~~~ 254 (365)
+++|++.|.-|+-. ... -+..+..++.+|.. .|+.+.....+++|+..|.++++.... ...+.
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 78888888777643 222 36778899999999 999999999999999999999976532 35788
Q ss_pred HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Q 017806 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGT 303 (365)
Q Consensus 255 ~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~ 303 (365)
+.+|.+..+.|++ ++|+++|.+++...-... ..+.+++.
T Consensus 169 YLigeL~rrlg~~----------~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRRLGNY----------DEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHhCCH----------HHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999996 999999999998643322 34455544
No 256
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.73 E-value=0.0032 Score=55.70 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.|+.+.|. ..|+.|+.++|++++++..+|......++. -+|-.+|-+|+.++|.+.+++.|..
T Consensus 129 ~Gk~ekA~-------~lfeHAlalaP~~p~~L~e~G~f~E~~~~i----------v~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAM-------TLFEHALALAPTNPQILIEMGQFREMHNEI----------VEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHH-------HHHHHHHhcCCCCHHHHHHHhHHHHhhhhh----------HhhhhhhheeeeeCCCchHHHhhhh
Confidence 89999999 779999999999999999999999998887 9999999999999999999988876
Q ss_pred HHH
Q 017806 303 TVL 305 (365)
Q Consensus 303 ~~~ 305 (365)
...
T Consensus 192 RT~ 194 (472)
T KOG3824|consen 192 RTT 194 (472)
T ss_pred ccc
Confidence 543
No 257
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.11 Score=48.04 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
-.++++.-.+.+..+|+...+|+..-.++...... +..........+++-+.....++..+|+...+|+.+..++.+
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~--~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~- 121 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR--AQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK- 121 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh--hcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-
Confidence 45677888888999999999998877766554321 122333344568899999999999999999999999999988
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
.+.. .+++-+..++++++.||.+..+|..+=.+....... .....+=+++..++|.-++.|..+|.
T Consensus 122 ---~p~~-----~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~------~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 122 ---NPHS-----DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS------RNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred ---CCCc-----hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc------cccchhHHHHHHHHHhccchhhhHHH
Confidence 7765 334444889999999999998888776666554431 00125678899999999999999999
Q ss_pred HHHHHHHHhh
Q 017806 300 NLGTVLYGLA 309 (365)
Q Consensus 300 ~lg~~~~~~g 309 (365)
+...++..+-
T Consensus 188 yRs~lL~~l~ 197 (421)
T KOG0529|consen 188 YRSLLLSTLH 197 (421)
T ss_pred HHHHHHHHhc
Confidence 9999888654
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.11 Score=46.27 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=73.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCC---------CCchhhhHHHHHHHHHHHH------
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS---------TSPSKDALLEEACKKYDEA------ 198 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~---------~~~~~~~~~~~A~~~~~~a------ 198 (365)
....|++.+|...|..++...|++.++...++.|+...|+...+.. ......+ ....++.+.++
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCH
Confidence 3455889999999999999999999999999999999998544410 0000111 11224444433
Q ss_pred ------HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 199 ------TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 199 ------l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
+..+|++.++.+.++..+.. .|+.++|. ..+-..++.|
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~----~g~~e~Al-------e~Ll~~l~~d 266 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHL----VGRNEAAL-------EHLLALLRRD 266 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhc
Confidence 44589999999999999999 99999999 5565555554
No 259
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.65 E-value=0.011 Score=56.82 Aligned_cols=103 Identities=19% Similarity=0.093 Sum_probs=86.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
..+|+-..|+.|+..++...|... ....+|+++..+.|- .-.|-..+.+++.++-..+..++.+|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~--------------~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL--------------HLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh--------------hccHHHHHHHHHhhcccCchHHHhcc
Confidence 345889999999999999888654 347889999998887 88899999999999988888889988
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
.++.. +.+.+.|+ ++|+.|++.+|+++.+...|-.+-.
T Consensus 684 ~~~l~----l~~i~~a~-------~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 684 NAYLA----LKNISGAL-------EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHH----HhhhHHHH-------HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888 88888888 8899999999999888776655544
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.64 E-value=0.0037 Score=37.07 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
+|.+||.+|..+|+ |++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~--------------~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD--------------YEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT---------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--------------HHHHHHHHHHHHHh
Confidence 57899999999999 99999999996654
No 261
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.57 E-value=0.005 Score=35.36 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++++++|.++...|++ ++|+..|++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence 4789999999999996 99999999999999974
No 262
>PRK10941 hypothetical protein; Provisional
Probab=96.54 E-value=0.022 Score=50.75 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=61.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...++++.|+.+.+..+.++|+++.-+..+|.+|.++|. +..|...++..++..|+++.+-.-.
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--------------~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--------------EHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46677999999999999999999999999999999999999 9999999999999999998765543
Q ss_pred H
Q 017806 213 A 213 (365)
Q Consensus 213 g 213 (365)
.
T Consensus 256 ~ 256 (269)
T PRK10941 256 A 256 (269)
T ss_pred H
Confidence 3
No 263
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.54 E-value=0.098 Score=48.17 Aligned_cols=161 Identities=9% Similarity=0.050 Sum_probs=114.1
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE 170 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 170 (365)
+..+|.++++|..+.... ...-. .... ......-.+.-+..|++||+.+|++...+..+=.+...
T Consensus 12 v~~~P~di~~Wl~li~~Q-d~~~~-------------~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~ 77 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQ-DELFR-------------LQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK 77 (321)
T ss_pred HHhCcccHHHHHHHHHHH-HHhcc-------------ccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 567889998887765333 11100 0000 11122346778899999999999999988887777777
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC---
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--- 247 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~--- 247 (365)
..+ -++-..-+++++..+|++...|...-...... ...-.+......|.+++..+.......
T Consensus 78 ~~~--------------~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~ 142 (321)
T PF08424_consen 78 VWD--------------SEKLAKKWEELLFKNPGSPELWREYLDFRQSN-FASFTVSDVRDVYEKCLRALSRRRSGRMTS 142 (321)
T ss_pred hCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHhhcccccc
Confidence 777 88889999999999999999887755444320 002357788888888888777765442
Q ss_pred --------CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 248 --------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 248 --------p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
-....++.+++..+...|.. +.|+..++-.++++
T Consensus 143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~----------E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 143 HPDLPELEEFMLYVFLRLCRFLRQAGYT----------ERAVALWQALLEFN 184 (321)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCch----------HHHHHHHHHHHHHH
Confidence 11245667778888888886 99999999999986
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.17 Score=41.35 Aligned_cols=161 Identities=17% Similarity=0.095 Sum_probs=116.9
Q ss_pred CCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCccccCCCCch
Q 017806 106 GNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDY--DALYNWALVLQESADNVSLDSTSPS 183 (365)
Q Consensus 106 g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~a~~~~~~ 183 (365)
|..|+ +.+..+.+-+.|..++++... +..++|+..|...-+.+-... -+.+..|.+....|+
T Consensus 46 gy~yw-~~s~as~sgd~flaAL~lA~~-----~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd---------- 109 (221)
T COG4649 46 GYTYW-QTSRASKSGDAFLAALKLAQE-----NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD---------- 109 (221)
T ss_pred eeehh-cccccccchHHHHHHHHHHHc-----CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc----------
Confidence 34554 677778888888888876443 447899999988877765543 356777888889999
Q ss_pred hhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHH
Q 017806 184 KDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA-VQLNWNSPQALNNWG 258 (365)
Q Consensus 184 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg 258 (365)
-..|+..|..+-.-.|. .-.+...-+.++.. .|.|+... ...+.. ..-+|--..+.--||
T Consensus 110 ----ta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD----~gsy~dV~-------srvepLa~d~n~mR~sArEALg 174 (221)
T COG4649 110 ----TAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD----NGSYDDVS-------SRVEPLAGDGNPMRHSAREALG 174 (221)
T ss_pred ----HHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc----cccHHHHH-------HHhhhccCCCChhHHHHHHHHh
Confidence 99999999998665432 23456666778888 99998877 333321 233444566777899
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
.+-++-|++ ..|.++|.+... +.+-+....+.+.+++.+
T Consensus 175 lAa~kagd~----------a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 175 LAAYKAGDF----------AKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHhccch----------HHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 999999996 999999999887 556677777777776654
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.53 E-value=0.22 Score=49.56 Aligned_cols=143 Identities=22% Similarity=0.149 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPTLHDAFYNW 212 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l 212 (365)
++...|..+|+.+... ++..+...+|.++..-+. ....+.+.|+.+|+.+... .-.++.+.+.+
T Consensus 226 ~~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~---------g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~l 294 (552)
T KOG1550|consen 226 GELSEAFKYYREAAKL--GHSEAQYALGICYLAGTY---------GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGL 294 (552)
T ss_pred hhhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccc---------cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHH
Confidence 3467889999888765 678889999999987522 1122399999999999771 11256688999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
|.+|.. ..-...- .+..|+.+|.++... +++.+.+.+|.++..-. +..++..|..+|..|...
T Consensus 295 g~~Y~~----g~~~~~~--d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~-------~~~d~~~A~~yy~~Aa~~-- 357 (552)
T KOG1550|consen 295 GRLYLQ----GLGVEKI--DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT-------KERDYRRAFEYYSLAAKA-- 357 (552)
T ss_pred HHHHhc----CCCCccc--cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC-------ccccHHHHHHHHHHHHHc--
Confidence 999987 4311110 333444889988876 46788999999998876 112358999999999865
Q ss_pred CCHHHHHHHHHHHHHh
Q 017806 293 DFHRAIYNLGTVLYGL 308 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~ 308 (365)
.+..+.++++.||..-
T Consensus 358 G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 358 GHILAIYRLALCYELG 373 (552)
T ss_pred CChHHHHHHHHHHHhC
Confidence 5788999999998743
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.48 E-value=0.096 Score=48.62 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=104.5
Q ss_pred hhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-C-C----
Q 017806 135 SRQRILTFAAKRYANAIERNP----EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-T---- 204 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p-~---- 204 (365)
...|.++.|...+.++...++ ..+.+.+..+.+++..|+ ..+|+..++..+... . .
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--------------~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--------------QEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhccccc
Confidence 345889999999999888652 246778888999999999 999999999888721 1 1
Q ss_pred ---------------------CHHHHHHHHHHHHHHHHhcCCHHHHH------HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 205 ---------------------LHDAFYNWAIAISDRAKMRGRTKEAE------ELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 205 ---------------------~~~~~~~lg~~~~~~~~~~g~~~~A~------~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
........+.++.. .|+|-... ..++.+++.|..+++.+|+...+|+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~----~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLL----LAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHH----HHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 11222345566666 66666665 556667799999999999999999999
Q ss_pred HHHHHHhcCcchhH-------HhhhHHHHHHHHHHHHHHhCCCC
Q 017806 258 GLALQELSAIVPAR-------EKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 258 g~~~~~~~~~~~~~-------~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
|..+...-+..... ........|+..|-+++.+.+.+
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 99988875543221 23344567999999999998873
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.47 E-value=0.005 Score=36.51 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
+|.+||.+|..+|++ ++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDY----------EKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-H----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence 578999999999996 9999999996654
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.41 E-value=0.21 Score=46.25 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
......|...+.+....|. ++.|...+.++...++. .+.+....+.++.. .|+..+|+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~--------------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~Ai 204 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGN--------------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEAI 204 (352)
T ss_pred hHHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHHH
Confidence 3556778888889999998 99999999999886532 56788888999999 99999999
Q ss_pred HHHHHHHH-HHHHHHhc----------------------C----CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 231 ELWKQATK-NYEKAVQL----------------------N----WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 231 ~~~~~A~~-~~~~al~~----------------------~----p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
..++..+. .+..-+.. + ...+.++..+|....... -....+.+++++..
T Consensus 205 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~----~~~~~~~~~~~~~~ 280 (352)
T PF02259_consen 205 QKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY----SKLSSESSDEILKY 280 (352)
T ss_pred HHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc----cccccccHHHHHHH
Confidence 77666555 33322100 0 011334445555555540 00022456999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCcc
Q 017806 284 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (365)
Q Consensus 284 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 346 (365)
|++++.++|+...+|+.+|..+...-+......... ...........+...|.++..+.+.
T Consensus 281 ~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 281 YKEATKLDPSWEKAWHSWALFNDKLLESDPREKEES--SQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHhhhhccccc--chhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999887765443221100 0011123335567777777777666
No 269
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.39 E-value=0.0072 Score=33.71 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
.+++.+|.++..+++ ++.|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~--------------~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD--------------YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh--------------HHHHHHHHHHHHccCCCC
Confidence 468999999999999 999999999999998863
No 270
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.36 E-value=0.82 Score=42.10 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=89.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
.-|++.++.+|.+..+|..+.......-...... ........+.-+..|++||+.+|++...+..+-.+... ..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~----~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK----VW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hC
Confidence 4578889999999999999887766553311100 23344557888999999999999999998888777777 77
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
..++.. +.+++++..+|++...|..+-..... ...+ .+......|.++|+.
T Consensus 80 ~~~~l~-------~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f--------~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 80 DSEKLA-------KKWEELLFKNPGSPELWREYLDFRQSNFASF--------TVSDVRDVYEKCLRA 131 (321)
T ss_pred CHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHH
Confidence 777666 67899999999999998766554444 2222 135666666666644
No 271
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.33 E-value=0.15 Score=53.16 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=90.2
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
.-.....|++|+..|++.-.-.|.. .++.+..|..+..++++.|+- +.|.+|+..|++. .-.|.-|--|...
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYL-HGGVGAPLEYLGK 558 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence 3345577999999999999998874 578999999999977777764 5566666888874 4457778888889
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+.+|.++|++ ++-+++|.-|++..|+++.+-...-.+.+++.
T Consensus 559 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 559 ALVYQRLGEY----------NEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred HHHHHHhhhH----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 9999999996 99999999999999999876554444444444
No 272
>PRK10941 hypothetical protein; Provisional
Probab=96.32 E-value=0.056 Score=48.18 Aligned_cols=77 Identities=12% Similarity=0.004 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
..+.++-.+|...++ ++.|+.+.+..+.++|+++.-+.-+|.+|.+ +|.+..|. .
T Consensus 182 Rml~nLK~~~~~~~~--------------~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q----L~c~~~A~-------~ 236 (269)
T PRK10941 182 KLLDTLKAALMEEKQ--------------MELALRASEALLQFDPEDPYEIRDRGLIYAQ----LDCEHVAL-------S 236 (269)
T ss_pred HHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHH-------H
Confidence 356777888888888 9999999999999999999999999999999 99999999 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH
Q 017806 239 NYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~ 260 (365)
.++.-++..|+++.+-.-.-.+
T Consensus 237 DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 237 DLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHhCCCchhHHHHHHHH
Confidence 7999999999998876544433
No 273
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.32 E-value=0.061 Score=39.33 Aligned_cols=70 Identities=24% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRA 220 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~ 220 (365)
.+..+++.++.+|++..+.+.+|..+...|+ +++|++.+-.++..+++. ..+...+-.++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~--------------~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-- 70 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGD--------------YEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-- 70 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCccccccHHHHHHHHHHHH--
Confidence 4567889999999999999999999999999 999999999999998764 5555666666655
Q ss_pred HhcCCHHHHH
Q 017806 221 KMRGRTKEAE 230 (365)
Q Consensus 221 ~~~g~~~~A~ 230 (365)
.|.-+...
T Consensus 71 --lg~~~plv 78 (90)
T PF14561_consen 71 --LGPGDPLV 78 (90)
T ss_dssp --H-TT-HHH
T ss_pred --cCCCChHH
Confidence 66644444
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.31 E-value=0.22 Score=40.40 Aligned_cols=112 Identities=17% Similarity=-0.016 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.+..+..+-...++ .+++...+.-..-+.|..+..-..-|.++.. .|+|.+|+ ..
T Consensus 12 gLie~~~~al~~~~--------------~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~----r~~w~dA~-------rl 66 (160)
T PF09613_consen 12 GLIEVLSVALRLGD--------------PDDAEALLDALRVLRPEFPELDLFDGWLHIV----RGDWDDAL-------RL 66 (160)
T ss_pred HHHHHHHHHHccCC--------------hHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hCCHHHHH-------HH
Confidence 44555555566667 9999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++......|..+.+.-.++.|+..+++ ..=..+-.++++..+ ++.+.. |...+....
T Consensus 67 Lr~l~~~~~~~p~~kALlA~CL~~~~D-----------~~Wr~~A~evle~~~-d~~a~~-Lv~~Ll~~~ 123 (160)
T PF09613_consen 67 LRELEERAPGFPYAKALLALCLYALGD-----------PSWRRYADEVLESGA-DPDARA-LVRALLARA 123 (160)
T ss_pred HHHHhccCCCChHHHHHHHHHHHHcCC-----------hHHHHHHHHHHhcCC-ChHHHH-HHHHHHHhc
Confidence 999888889999999999999999999 344445566666655 454433 333333333
No 275
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.29 E-value=0.0078 Score=33.56 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.+|+++|.++...+++ +.|+.+|++++.++|++
T Consensus 2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence 5788999999999996 99999999999998863
No 276
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.27 E-value=0.19 Score=47.01 Aligned_cols=149 Identities=15% Similarity=0.067 Sum_probs=95.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-------------------CCCH---HHHH
Q 017806 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-------------------WNSP---QALN 255 (365)
Q Consensus 198 al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-------------------p~~~---~~~~ 255 (365)
.+..+|-+.+.+..++.++.. +|+...|.++.++|+-.|++++.-. +.|. .+.+
T Consensus 32 ll~~~PyHidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 345689999999999999999 9999999999999999998776321 1122 2444
Q ss_pred HHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HhhhhhhhhcC--------cCCCCCCC
Q 017806 256 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLY-GLAEDTLRTGG--------TVNPREVS 325 (365)
Q Consensus 256 ~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~g~~~~a~~~--------~~~~~~~~ 325 (365)
.....+.+.|- +..|.++++-.+.++|. |+-.....-..|. +.++...-+.. .......-
T Consensus 108 r~i~~L~~RG~----------~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 108 RYIQSLGRRGC----------WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred HHHHHHHhcCc----------HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 55556666666 59999999999999998 7754444433333 33333221111 11112235
Q ss_pred cchHHHHHHHHHHHHHhc--------------CccHHHHHHHHHhhhhh
Q 017806 326 PNELYSQSAIYIAAAHAL--------------KPSYSVYSSALRLVRSM 360 (365)
Q Consensus 326 ~~~~~~~a~~~~~~a~~~--------------~~~~~~~~~al~~~~~~ 360 (365)
|+-.|..+..++..-..- +.+.....+|+...+.+
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 666777777776544431 34455566666555443
No 277
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.24 E-value=0.067 Score=40.34 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=70.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
++..|++-+|++..+..+..++++. ..+..-|.++..+....+ +......-+--++++|.++..+.|..+..++
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~te---n~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTE---NPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhcc---CchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4567889999999999999888776 556677888877654111 2222333467799999999999999988888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
.||.-+.. ..+|++++...++++.+
T Consensus 83 ~la~~l~s-----------~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGS-----------VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhh-----------HHHHHHHHHHHHHHhcc
Confidence 87766544 33444444777777654
No 278
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.18 E-value=0.34 Score=45.11 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.++...++=..|....+ |+.-+..++..-.+ -++.+.+.+.+|.++.+| .+.|+.++|+
T Consensus 140 s~div~~lllSyRdiqd--------------ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr-n~~gdre~Al-- 202 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQD--------------YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR-NKPGDREKAL-- 202 (374)
T ss_pred ChhHHHHHHHHhhhhhh--------------HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc-ccCCCHHHHH--
Confidence 45667788888999898 99999999887766 455677777888887653 3468888888
Q ss_pred HHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 233 WKQATKNYEK-AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 233 ~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
..+.. .....+.+++++..+|.+|..+-.- .........++|+.+|.++.+++|+. ..-.|++.++...|.
T Consensus 203 -----~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~-s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 203 -----QILLPVLESDENPDPDTLGLLGRIYKDLFLE-SNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred -----HHHHHHHhccCCCChHHHHHHHHHHHHHHHH-cCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 66777 4455677899999999999875321 00112344799999999999999754 444677778777774
No 279
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.58 Score=44.45 Aligned_cols=165 Identities=16% Similarity=0.085 Sum_probs=109.0
Q ss_pred hhhcHHHHHHHHHHhhccChh------------------------hhhhhhhHHHHHHHHHHHHHh---CCC-------C
Q 017806 112 LAEQNNAAMELINSVTGVDEE------------------------GRSRQRILTFAAKRYANAIER---NPE-------D 157 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~------------------------~~~~~~~~~~A~~~~~~al~~---~p~-------~ 157 (365)
..|-+++|..+-.+++..... |....|++.+|++........ .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 345566666666666554321 455569999999887777664 454 2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-L--HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
+..++.+|.-...-+- ++.|...|..|+++... + +-+..|++.+|.. .|+-+.--
T Consensus 367 ~~ih~LlGlys~sv~~--------------~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~----~~~~ed~y---- 424 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNC--------------YENAEFHFIEATKLTESIDLQAFCNLNLAISYLR----IGDAEDLY---- 424 (629)
T ss_pred HHHHHHHhhHhhhcch--------------HHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH----hccHHHHH----
Confidence 3455666666666666 99999999999987644 2 4456788999988 77654433
Q ss_pred HHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH--------
Q 017806 235 QATKNYEKAVQLNWNS----------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-------- 296 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------- 296 (365)
+..+ .+.|.+ ..+++..|...+.++++ .+|.....+.+++. +++
T Consensus 425 ---~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l----------nEaK~~l~e~Lkma--naed~~rL~a~ 486 (629)
T KOG2300|consen 425 ---KALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDL----------NEAKRFLRETLKMA--NAEDLNRLTAC 486 (629)
T ss_pred ---HHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHhhc--chhhHHHHHHH
Confidence 2222 223331 45777888888888886 99999999999885 333
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 017806 297 AIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~~~a~~ 316 (365)
.+..||.+...+|+..+...
T Consensus 487 ~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHHHHHHHhcchHHHHh
Confidence 34445666667776555443
No 280
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.16 E-value=0.12 Score=37.72 Aligned_cols=66 Identities=20% Similarity=0.091 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcC
Q 017806 190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSA 266 (365)
Q Consensus 190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~ 266 (365)
..+..+++.+..+|++..+.+.++..+.. .|++++|+ ..+-.+++.++++ ..+.-.+-.++..+|.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~----~g~~e~Al-------~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLA----AGDYEEAL-------DQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 35778899999999999999999999999 99999999 7788999988775 3344444444444444
No 281
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.15 E-value=0.033 Score=36.20 Aligned_cols=44 Identities=20% Similarity=0.152 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
+.++.+|..++.+|+ |++|..+.+.+++++|+|..+......+.
T Consensus 2 d~lY~lAig~ykl~~--------------Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGE--------------YEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhh--------------HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 468899999999999 99999999999999999988776554443
No 282
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.12 Score=49.86 Aligned_cols=130 Identities=22% Similarity=0.083 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 017806 143 AAKRYANAIERNPEDYDALYN--WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 220 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~--lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 220 (365)
++..+...+.++|.++..+.. +...+...+. ...+.-.++.++..+|.+..++.+||.++..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~-- 113 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLAD--------------STLAFLAKRIPLSVNPENCPAVQNLAAALEL-- 113 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhcccccc--------------chhHHHHHhhhHhcCcccchHHHHHHHHHHH--
Confidence 566666667788888776333 4666667777 8889999999999999999999999999988
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW------GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l------g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.|....+.. .+.+.+....|++..+...+ |..+..+++. .++....++++++.|.+
T Consensus 114 --~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 114 --DGLQFLALA------DISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRT----------AEAELALERAVDLLPKY 175 (620)
T ss_pred --hhhHHHHHH------HHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhhhhh
Confidence 777666663 44555888889998888877 5555555554 88888888899999998
Q ss_pred HHHHHHHHHHHH
Q 017806 295 HRAIYNLGTVLY 306 (365)
Q Consensus 295 ~~~~~~lg~~~~ 306 (365)
+.+...+.....
T Consensus 176 ~~~~~~~~~~r~ 187 (620)
T COG3914 176 PRVLGALMTARQ 187 (620)
T ss_pred hhhHhHHHHHHH
Confidence 777666655533
No 283
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.86 Score=39.93 Aligned_cols=191 Identities=12% Similarity=-0.030 Sum_probs=93.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhh----------hhhhhHH-HHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGR----------SRQRILT-FAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~-~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|.+-.+|..+-.++.....+..+-++++..++..+|..+ ...|+.. .-+...+.++..+..+..+
T Consensus 70 i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHa 149 (318)
T KOG0530|consen 70 IRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHA 149 (318)
T ss_pred HHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhh
Confidence 3444555455544444442222334444444444444444421 0012332 3344444444444444444
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|..+-.+...-+. |+.-+.+..+.|+.+-.|-.+|+.+-.+... ...+..+ ..++.-+.+.
T Consensus 150 WshRqW~~r~F~~--------------~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~----~~~~~~~-~~le~El~yt 210 (318)
T KOG0530|consen 150 WSHRQWVLRFFKD--------------YEDELAYADELLEEDIRNNSAWNQRYFVITN----TKGVISK-AELERELNYT 210 (318)
T ss_pred hHHHHHHHHHHhh--------------HHHHHHHHHHHHHHhhhccchhheeeEEEEe----ccCCccH-HHHHHHHHHH
Confidence 4444444444444 5555555555555544444444443222222 1111110 0133345777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAI-QLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g 309 (365)
.+.|.+.|++-.+|+.|.-++.. .|-. .+..-.......+ +..-..+..+-.|...|...+
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~--------s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~ 273 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLS--------SDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDA 273 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCc--------CCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Confidence 88899999999999999998886 4410 0133333333333 444556777766776664433
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.07 E-value=0.14 Score=41.54 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
.+..+..+-.. .++.+++. ..+.-.--+.|+.+..-..-|.++...|++ .+|+..|+.+
T Consensus 12 gLie~~~~al~----~~~~~D~e-------~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~l 70 (160)
T PF09613_consen 12 GLIEVLSVALR----LGDPDDAE-------ALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHc----cCChHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHHH
Confidence 44455555555 78888888 667777778999999999999999999996 9999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 288 IQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 288 l~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
....|..+.+--.++.|++.+|+..+...
T Consensus 71 ~~~~~~~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 71 EERAPGFPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred hccCCCChHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999999998876654
No 285
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.06 E-value=0.046 Score=35.49 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+.++.++..+.++|++ ++|.++.+.+|+++|+|..+......+-.
T Consensus 2 d~lY~lAig~ykl~~Y----------~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEY----------EKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 5678899999999995 99999999999999999988766555443
No 286
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.28 Score=50.49 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
+.+.+|..+|.+....|. ..+||+.|-+| +++..|...-.+..+ .|.|++-+.++.-
T Consensus 1102 n~p~vWsqlakAQL~~~~--------------v~dAieSyika-----dDps~y~eVi~~a~~----~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGL--------------VKDAIESYIKA-----DDPSNYLEVIDVASR----TGKYEDLVKYLLM 1158 (1666)
T ss_pred CChHHHHHHHHHHHhcCc--------------hHHHHHHHHhc-----CCcHHHHHHHHHHHh----cCcHHHHHHHHHH
Confidence 567889999999988888 88888888776 555566666666666 7777766665432
Q ss_pred HH------------------------------------------HHHH----HHHhcCCCCHHHHHHHHHHHHHhcCcch
Q 017806 236 AT------------------------------------------KNYE----KAVQLNWNSPQALNNWGLALQELSAIVP 269 (365)
Q Consensus 236 A~------------------------------------------~~~~----~al~~~p~~~~~~~~lg~~~~~~~~~~~ 269 (365)
|. ++|+ .|.++--++..-|..|+..+..+|+++.
T Consensus 1159 aRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 10 1111 1112222345566778888888888876
Q ss_pred hHH-------------------------------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 270 ARE-------------------------------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 270 ~~~-------------------------------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
|-+ ..|.|++-+..++.++.+.--+-..+..
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 655 5688899999999998887777777777
Q ss_pred HHHHHHHhh
Q 017806 301 LGTVLYGLA 309 (365)
Q Consensus 301 lg~~~~~~g 309 (365)
||..|.+-.
T Consensus 1319 LaiLYskyk 1327 (1666)
T KOG0985|consen 1319 LAILYSKYK 1327 (1666)
T ss_pred HHHHHHhcC
Confidence 888887654
No 287
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.22 Score=48.20 Aligned_cols=133 Identities=15% Similarity=0.003 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYN--WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
-.-++..+...+.+++.++..+.. +...+.. .+....+. ..+..++..+|.++.+..+||.++...|
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~----~~~~~~~~-------~~~~~~l~~~~~~~~~~~~L~~ale~~~ 115 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAP----LADSTLAF-------LAKRIPLSVNPENCPAVQNLAAALELDG 115 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccc----cccchhHH-------HHHhhhHhcCcccchHHHHHHHHHHHhh
Confidence 344777777778888888876433 4777777 88887777 6789999999999999999999999988
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCc
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 345 (365)
.. +.-+....+-+....|++......+-.+|. .++..+..+.- .++...+.++..+.|
T Consensus 116 ~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~------------~~~~~~l~~~~d~~p 173 (620)
T COG3914 116 LQ---------FLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRT------------AEAELALERAVDLLP 173 (620)
T ss_pred hH---------HHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccH------------HHHHHHHHHHHHhhh
Confidence 76 455555555599999999999888866666 66665554432 345555566666666
Q ss_pred cHHHHHHH
Q 017806 346 SYSVYSSA 353 (365)
Q Consensus 346 ~~~~~~~a 353 (365)
.+.+...+
T Consensus 174 ~~~~~~~~ 181 (620)
T COG3914 174 KYPRVLGA 181 (620)
T ss_pred hhhhhHhH
Confidence 66554443
No 288
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.92 E-value=0.024 Score=34.40 Aligned_cols=36 Identities=33% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
..++++||.+|.. .|++++|+.++++++..+++.+.
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHHHHHHHhc
Confidence 4678999999999 99999999999999888887753
No 289
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.91 E-value=0.04 Score=52.43 Aligned_cols=97 Identities=23% Similarity=0.142 Sum_probs=79.1
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
..+.......++..|.+++...|.....+.+.+.++.+|. =.|+.-.|+ .....|++++|....+|+.|+.+
T Consensus 383 d~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk-W~~d~~~Al-------rDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 383 DGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK-WRGDSYLAL-------RDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred chhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh-ccccHHHHH-------HhHHhhccCChHHHHHHHHHHHH
Confidence 3344445899999999999999999999999999998721 123444444 78899999999999999999999
Q ss_pred HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+..++++ .+|+++...+....|.+.
T Consensus 455 L~el~r~----------~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 455 LNELTRY----------LEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHhhH----------HHhhhhHHHHhhcCchhh
Confidence 9999996 999998887777778554
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.86 E-value=0.99 Score=40.75 Aligned_cols=178 Identities=20% Similarity=0.111 Sum_probs=113.4
Q ss_pred hHHHHhcCCChhH---hhhcHHHHHHHHHHhhccCh-h-----------hhhhhhhHHHHHHHHHHHHHhCCCC-HHHHH
Q 017806 99 TDASFSQGNTPHQ---LAEQNNAAMELINSVTGVDE-E-----------GRSRQRILTFAAKRYANAIERNPED-YDALY 162 (365)
Q Consensus 99 ~~a~~~~g~~~~~---~~g~~~~A~~~~~~al~~~~-~-----------~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~ 162 (365)
+.+.+.+|.++.. ...+..+|+.+|+.+....- . +.....++.+|..+|+++.+..-.. ..+.+
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~ 152 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY 152 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3566666665521 12447889999987766652 1 1111248999999999999875433 34488
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.+|..-.. . ....-....|+..|.++.... ++.+.+++|.+|.. | ......+++|+.+|.+
T Consensus 153 ~l~~~~~~g~~--~-----~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~-----G--~Gv~~d~~~A~~wy~~ 216 (292)
T COG0790 153 RLGLAYLSGLQ--A-----LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK-----G--LGVPRDLKKAFRWYKK 216 (292)
T ss_pred HHHHHHHcChh--h-----hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc-----C--CCCCcCHHHHHHHHHH
Confidence 88988877320 0 000111458999999998876 88999999988854 3 1112233444499999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCcchh-----HHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 243 AVQLNWNSPQALNNWGLALQELSAIVPA-----REKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 243 al~~~p~~~~~~~~lg~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+.+... ...+++++ ++...|.-.+. .....+...|...+.++....+...
T Consensus 217 Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 217 AAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred HHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 998776 88999999 66666632000 0022345788888888777655443
No 291
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.85 E-value=0.14 Score=48.68 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 017806 142 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 142 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 221 (365)
.-...|++++...+.+...|..........+. +.+--..|.+++...|++++.|..-+.-.+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--------------~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe--- 151 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--------------YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE--- 151 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCchhHHhhhhhHHh---
Confidence 34567889999999999999888887777777 8888999999999999999999988877776
Q ss_pred hcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 222 MRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 222 ~~g~-~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
.+. .+.|. ..|.++++.+|+++..|...
T Consensus 152 -~n~ni~saR-------alflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 152 -INLNIESAR-------ALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred -hccchHHHH-------HHHHHHhhcCCCChHHHHHH
Confidence 555 66666 77999999999998877643
No 292
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.58 E-value=1.1 Score=43.21 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=99.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcC
Q 017806 146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 146 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~g 224 (365)
.|++++-.-+-.++.|+.-+..+...++.....+........-+++..+|+++++.-- .+...++.++..-..+.+-.
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n- 345 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN- 345 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc-
Confidence 4677777778889999988888777777666666677777778999999999987532 34444444444333211100
Q ss_pred CHHHHHHHHHH----------------------------HHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCcchhHHhhh
Q 017806 225 RTKEAEELWKQ----------------------------ATKNYEKAVQLNWNSPQALNNWGLA-LQELSAIVPAREKQT 275 (365)
Q Consensus 225 ~~~~A~~~~~~----------------------------A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~~~~~~~~ 275 (365)
.++...+.+++ |...|.++-+..-....++..-|.. |...++
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD--------- 416 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKD--------- 416 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCC---------
Confidence 12233322222 3444555444332222333322222 222344
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
+..|.+.|+-.+...++.+.........+..++++.-+...+
T Consensus 417 -~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LF 458 (656)
T KOG1914|consen 417 -KETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALF 458 (656)
T ss_pred -hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHH
Confidence 599999999999999998887777778888888776554444
No 293
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.41 E-value=0.61 Score=46.56 Aligned_cols=65 Identities=14% Similarity=0.022 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCcchhHH---hhhHHHHHHHHHHHHH------Hh----CCCC-HHHHHHHHHHHHHhhhhhhhhc
Q 017806 252 QALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAAI------QL----QFDF-HRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al------~~----~p~~-~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
..|...+.-+-+.|++.+|+. ..|..+.|+..|.+.- ++ .|++ ...+..+|.-|...|+...+..
T Consensus 825 ~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 345555666777777755554 4555667777666531 11 2322 2345556666666665544433
No 294
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.58 Score=43.53 Aligned_cols=148 Identities=19% Similarity=0.193 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
..+++-+.+...++..+|+...+|+.+..++.+.+. ..+..-+..++++++.+|.|..+|..+=.+..
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~------------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH------------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 457888999999999999999999999999998876 13788899999999999999888887777765
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH---hhhHHHHHHHHHHHHHHhCCCC
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~~p~~ 294 (365)
. +++.+. ..+.++ ....+++..++.+..+|.++..++..+-..+ +.. .......-+..-..|+-.+|++
T Consensus 157 ~-~~~~~~-~~~~El-----~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~-~~g~~~~~~~l~sEle~v~saiFTdp~D 228 (421)
T KOG0529|consen 157 Q-AERSRN-LEKEEL-----EFTTKLINDNFSNYSAWHYRSLLLSTLHPKE-ADGNFMPKELLQSELEMVHSAIFTDPED 228 (421)
T ss_pred H-Hhcccc-cchhHH-----HHHHHHHhccchhhhHHHHHHHHHHHhcccc-ccCccCCHHHHHHHHHHHHHHHhcCccc
Confidence 5 111211 122222 7788899989999999999999888532210 000 1122345566677788889999
Q ss_pred HHHHHHHHHHH
Q 017806 295 HRAIYNLGTVL 305 (365)
Q Consensus 295 ~~~~~~lg~~~ 305 (365)
..+|+..-+.+
T Consensus 229 qS~WfY~rWLl 239 (421)
T KOG0529|consen 229 QSCWFYHRWLL 239 (421)
T ss_pred cceeeehHHhh
Confidence 99888744433
No 295
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.20 E-value=0.83 Score=34.96 Aligned_cols=86 Identities=21% Similarity=0.176 Sum_probs=60.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-
Q 017806 135 SRQRILTFAAKRYANAIERNPE------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL- 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~- 201 (365)
+..|-|++|...|.++++.... +.-++..|+.++..+|+ |++++..-.++|..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr--------------y~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR--------------YDECLQSADRALRYF 85 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHHH
Confidence 3346688888888888875422 34578889999999999 99988888888753
Q ss_pred ------CCCCHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 202 ------CPTLHD----AFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 202 ------~p~~~~----~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
+.+... +.++.+.++.. +|+.++|+..|+.|.+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~----~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEG----LGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Confidence 444433 45678999999 9999999965555443
No 296
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=95.18 E-value=0.21 Score=34.95 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
...+.-+-. .|++.+|+.+|+.|+..+.+++...|++..-......+...+.+
T Consensus 10 a~~AVe~D~----~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 10 AINAVKAEK----EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 334444445 99999999999999999999999999988766555555555444
No 297
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.17 E-value=0.036 Score=47.26 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
..++.+.|.+.|.+++++-|+....|+.+|......|+ ++.|...|++.++++|.+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~--------------~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE--------------FDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc--------------HHHHHHHHHHHHcCCcccc
Confidence 34788999999999999999999999999999999999 9999999999999999863
No 298
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.11 E-value=0.14 Score=47.88 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=109.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHH-HHHh---CCCCHH---HHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYAN-AIER---NPEDYD---ALYNW 164 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~-al~~---~p~~~~---~~~~l 164 (365)
+...|-+++++..++.++ .+.|++..|.++.++|+-....+.... +..-...... ...+ .+.|-. +.+..
T Consensus 33 l~~~PyHidtLlqls~v~-~~~gd~~~A~~lleRALf~~e~~~~~~--F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVY-RQQGDHAQANDLLERALFAFERAFHPS--FSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHH--hhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 578999999999999999 599999999999999876644332110 1000000000 0111 133333 44555
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFY-NWAIAISDRAKMRGRTKEAEELWKQATKN-YE 241 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~-~lg~~~~~~~~~~g~~~~A~~~~~~A~~~-~~ 241 (365)
...+.+.|- +..|.++++=.+.++|. ++-... .+-....+ .++|+--+..++..... ++
T Consensus 110 i~~L~~RG~--------------~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr----s~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 110 IQSLGRRGC--------------WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR----SRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHHHhcCc--------------HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh----cCCHHHHHHHHHhHhhhhhh
Confidence 566667777 99999999999999998 665433 33333445 78888777554432221 11
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcc-----hhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIV-----PAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
..+.. .|..-+..+.++..+++.+ .......+.+.|...+++|+...|.
T Consensus 172 ~~~~~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 172 NWLSL---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhh---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 11222 3456667888888887730 0111223336888889999887664
No 299
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.91 E-value=1.1 Score=35.05 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
.....+++++++....+ .....+.|.+++..++ -.|. .-+..+.|+..+++ .++|+.++
T Consensus 31 s~~s~f~lAwaLV~S~~-----------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~---- 91 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRD-----------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSL---- 91 (149)
T ss_pred hHHHHHHHHHHHHcccc-----------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHH----
Confidence 35667889998887554 2338899999999997 4444 46788999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
++.+..++.+|++..+....-.+.-+
T Consensus 92 ---~yvd~ll~~e~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 92 ---RYVDALLETEPNNRQALELKETIEDK 117 (149)
T ss_pred ---HHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 77999999999998876554444443
No 300
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.87 E-value=2.2 Score=38.38 Aligned_cols=123 Identities=17% Similarity=0.022 Sum_probs=77.4
Q ss_pred hhhhHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHhc-CccccCCCCchhhhHHHHHHHHHHHHHHh----C
Q 017806 136 RQRILTFAAKRYANAIERN-PED-------YDALYNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRL----C 202 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~-p~~-------~~~~~~lg~~~~~~~-~~~~a~~~~~~~~~~~~~A~~~~~~al~~----~ 202 (365)
++|+++.|..++.++-.+. ..+ .+..++.|......+ + ++.|+.++++++++ .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~--------------~~~a~~wL~~a~~~l~~~~ 70 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK--------------YEEAVKWLQRAYDILEKPG 70 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC--------------hHHHHHHHHHHHHHHHhhh
Confidence 4566777777777665543 223 334566666666666 6 99999999999988 2
Q ss_pred CC----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH
Q 017806 203 PT----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 272 (365)
Q Consensus 203 p~----------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~ 272 (365)
+. ...++..|+.++.. .+.++.. ++|+...+.+-...|+.+..+...=.++.+.++.
T Consensus 71 ~~~~~~~~~~elr~~iL~~La~~~l~----~~~~~~~----~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~----- 137 (278)
T PF08631_consen 71 KMDKLSPDGSELRLSILRLLANAYLE----WDTYESV----EKALNALRLLESEYGNKPEVFLLKLEILLKSFDE----- 137 (278)
T ss_pred hccccCCcHHHHHHHHHHHHHHHHHc----CCChHHH----HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh-----
Confidence 21 13456677888877 7766433 3455666666666788777774444444445554
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 017806 273 KQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~ 290 (365)
+++.+.+.+.+.-
T Consensus 138 -----~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 138 -----EEYEEILMRMIRS 150 (278)
T ss_pred -----hHHHHHHHHHHHh
Confidence 5555555555543
No 301
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.79 E-value=1.6 Score=39.64 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=85.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED-YDALYNWALVLQE 170 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 170 (365)
++.+|.-..++..++. +...-..+|..++++++.....++...++...--..++-..+.|-+. .-....|+.|..+
T Consensus 211 LeIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARk 287 (556)
T KOG3807|consen 211 LEINNECATAYVLLAE---EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARK 287 (556)
T ss_pred HhcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHH
Confidence 6777888888877764 34455778888888888776655433222111111122222222221 2234677888888
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHH----------------
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRAKMRGRTKEAEEL---------------- 232 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~g~~~~A~~~---------------- 232 (365)
+|+ ..+|++.++...+-.|-. ..++-||-.++.. ..-|.+....
T Consensus 288 lGr--------------lrEA~K~~RDL~ke~pl~t~lniheNLiEalLE----~QAYADvqavLakYDdislPkSA~ic 349 (556)
T KOG3807|consen 288 LGR--------------LREAVKIMRDLMKEFPLLTMLNIHENLLEALLE----LQAYADVQAVLAKYDDISLPKSAAIC 349 (556)
T ss_pred hhh--------------HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccccCcchHHHH
Confidence 888 999999998887766632 2233344444333 3322222211
Q ss_pred HH----------------------------HHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 233 WK----------------------------QATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 233 ~~----------------------------~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
|. .|++...++++.+|.-+..+..+-
T Consensus 350 YTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 350 YTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 11 167888899999998887766554
No 302
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.70 E-value=0.06 Score=48.02 Aligned_cols=88 Identities=9% Similarity=0.038 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhcCcchh
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN-WGLALQELSAIVPA 270 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~~~~~~~ 270 (365)
+-.|.++....|+++..|...+..... .|-+.+-- ..|..+++.+|.+++.|.. -+.-+...+++
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~~Y~~k----~k~y~~~~-------nI~~~~l~khP~nvdlWI~~c~~e~~~~ani--- 158 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYAAYVIK----KKMYGEMK-------NIFAECLTKHPLNVDLWIYCCAFELFEIANI--- 158 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHhcCCCCceeeeeeccchhhhhccH---
Confidence 345666777788999999987776666 66666666 7899999999999999987 44556777775
Q ss_pred HHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
+.+...|.++++++|+++..|..
T Consensus 159 -------~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 159 -------ESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred -------HHHHHHHHhhhccCCCCchHHHH
Confidence 99999999999999999988765
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.68 E-value=1.5 Score=35.13 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.+++...+.-.--+.|+.+..-..-|.++.. .|+|.+|+ ..++......+..+-..-.++.|+.-+|+.
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~----rg~w~eA~-------rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIA----RGNYDEAA-------RILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHH----cCCHHHHH-------HHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 8999999988888999999999999999999 99999999 779998887788898999999999999994
No 304
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.58 E-value=0.68 Score=39.85 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------
Q 017806 138 RILTFAAKRYANAIER----NPE---DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------ 204 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------ 204 (365)
..+++|+..|.-|+-. ... -+..+..+|++|..+++ ......-+..|...|.++++....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-------~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-------EENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-------HHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 4566777766665542 111 25678888999998887 222234466778888888766422
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNWGLA 260 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~ 260 (365)
...+.+.+|.+..+ .|++++|+ ++|.+++...-.+. ..+.+++.-
T Consensus 164 ~~~l~YLigeL~rr----lg~~~eA~-------~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 164 EATLLYLIGELNRR----LGNYDEAK-------RWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred HHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHcCCCCCCcHHHHHHHHH
Confidence 35788899999999 99999999 88999886543322 355555443
No 305
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=94.51 E-value=0.36 Score=34.12 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
.|++++|+.+|..||..|..+++..|+...
T Consensus 19 ~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 19 EGRFQEALVCYQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999986544
No 306
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.51 E-value=0.065 Score=45.74 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
.+.+.+.|.+++++.|.....|+.+|....+ .|+++.|. +.|++.++++|.+.
T Consensus 11 ~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa-------~a~~~~L~ldp~D~ 63 (287)
T COG4976 11 AEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAA-------AAYEEVLELDPEDH 63 (287)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHH-------HHHHHHHcCCcccc
Confidence 9999999999999999999999999999999 99999999 88999999998764
No 307
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.21 Score=44.00 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=61.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...++++.|..+.++.+.++|.++.-+...|.+|.++|. +..|++.++..++..|+.+.+-.-.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c--------------~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC--------------YHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC--------------chhhHHHHHHHHHhCCCchHHHHHH
Confidence 45667899999999999999999999999999999999999 9999999999999999988765544
Q ss_pred HHH
Q 017806 213 AIA 215 (365)
Q Consensus 213 g~~ 215 (365)
+..
T Consensus 256 ~~l 258 (269)
T COG2912 256 AQL 258 (269)
T ss_pred HHH
Confidence 433
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.34 E-value=0.1 Score=31.41 Aligned_cols=31 Identities=29% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~ 202 (365)
..++.++|.+|..+|+ +++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGR--------------YEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh--------------cchhhHHHHHHHHHH
Confidence 3578999999999999 999999999999863
No 309
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.30 E-value=0.26 Score=47.23 Aligned_cols=82 Identities=26% Similarity=0.216 Sum_probs=68.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..+....|+.+|.+++..-|.....+-+++.++...+= .|..-.|+..+-.|++++|....+|+.|+.
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW-----------~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKW-----------RGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhc-----------cccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 345568889999999999999999999999888876542 011667888889999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEE 231 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~ 231 (365)
++.. ++++.+|++
T Consensus 454 aL~e----l~r~~eal~ 466 (758)
T KOG1310|consen 454 ALNE----LTRYLEALS 466 (758)
T ss_pred HHHH----HhhHHHhhh
Confidence 9999 999999994
No 310
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.17 E-value=4.5 Score=39.26 Aligned_cols=163 Identities=12% Similarity=0.022 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHhhccChh----hhhhh----------hhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCccccCC
Q 017806 115 QNNAAMELINSVTGVDEE----GRSRQ----------RILTFAAKRYANAIERNPEDYD-ALYNWALVLQESADNVSLDS 179 (365)
Q Consensus 115 ~~~~A~~~~~~al~~~~~----~~~~~----------~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~a~~ 179 (365)
..+++...|++++..... .++.. ..++....++.+++.+.-.+.. +|.++-+.-.+..-
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG------ 381 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG------ 381 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh------
Confidence 378888899888775432 11111 2355555667777665432222 23333333333333
Q ss_pred CCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
...|...|.+|-+..-....++..-|.+-+.+ .++..-|. +.|+-.++..++.+..-+..-.
T Consensus 382 --------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c---skD~~~Af-------rIFeLGLkkf~d~p~yv~~Yld 443 (656)
T KOG1914|consen 382 --------LKAARKIFKKAREDKRTRHHVFVAAALMEYYC---SKDKETAF-------RIFELGLKKFGDSPEYVLKYLD 443 (656)
T ss_pred --------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHh---cCChhHHH-------HHHHHHHHhcCCChHHHHHHHH
Confidence 78899999999876555556666666665554 78888888 7799999999999999999999
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--CCCC-HHHHHHHHHHHHHhhhh
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDF-HRAIYNLGTVLYGLAED 311 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~-~~~~~~lg~~~~~~g~~ 311 (365)
.+..+++- ..|..+|++++.. .++. .++|..+-..-...|+.
T Consensus 444 fL~~lNdd----------~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 444 FLSHLNDD----------NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhCcc----------hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 99999997 8999999999987 4333 35666665555555543
No 311
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.03 E-value=0.86 Score=40.71 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
...++..++..+...|+ ++.++..+++.+.++|.+...|..+-.+|.. .|+...|+..|++.
T Consensus 152 ~~~~l~~lae~~~~~~~--------------~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~----~g~~~~ai~~y~~l 213 (280)
T COG3629 152 FIKALTKLAEALIACGR--------------ADAVIEHLERLIELDPYDEPAYLRLMEAYLV----NGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCchHHHHHHHHH
Confidence 35567778888888888 9999999999999999999999999999999 99999999777766
Q ss_pred HHHHHHHHhcCCC
Q 017806 237 TKNYEKAVQLNWN 249 (365)
Q Consensus 237 ~~~~~~al~~~p~ 249 (365)
-+....-+.++|.
T Consensus 214 ~~~~~edlgi~P~ 226 (280)
T COG3629 214 KKTLAEELGIDPA 226 (280)
T ss_pred HHHhhhhcCCCcc
Confidence 5555555555553
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.95 E-value=4.5 Score=36.33 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhcC---CCC---
Q 017806 186 ALLEEACKKYDEATRLC----PTL----HDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAVQLN---WNS--- 250 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~~~~~g-~~~~A~~~~~~A~~~~~~al~~~---p~~--- 250 (365)
|+++.|..+|.|+-.+. |+. ...+++.|..... .+ ++++|+..+++|.+.+++.-+.+ |+.
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 33999999999986654 432 4678888888888 88 99999988888888876633222 332
Q ss_pred -HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 251 -PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 251 -~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
..++..++.+|...+.. ..+++|....+.+-.-.|+.+..+..--.++.+.+
T Consensus 83 r~~iL~~La~~~l~~~~~-------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~ 135 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY-------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF 135 (278)
T ss_pred HHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC
Confidence 35677888888888775 33456666666666667887777644444444433
No 313
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.88 E-value=0.14 Score=45.77 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=70.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHhcCC
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN-WAIAISDRAKMRGR 225 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~~~~~g~ 225 (365)
|.++-...|+++..|...+......+. |.+--..|.+++...|.|++.|.. .+.-+.. .++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~--------------y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~----~an 157 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKM--------------YGEMKNIFAECLTKHPLNVDLWIYCCAFELFE----IAN 157 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCceeeeeeccchhhh----hcc
Confidence 445555678999999888877777777 999999999999999999999987 4444555 788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
++.+. ..|.++++.+|+++..|...
T Consensus 158 i~s~R-------a~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 158 IESSR-------AMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHH-------HHHHhhhccCCCCchHHHHH
Confidence 88888 77999999999999888754
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.79 E-value=1.1 Score=35.81 Aligned_cols=77 Identities=12% Similarity=-0.076 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.++.+++. ..+...--+.|+.+..-..-|.++...|++ .+|+..|+...+-.+..+.+.-.++
T Consensus 23 ~~d~~D~e-------~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 23 SADPYDAQ-------AMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred cCCHHHHH-------HHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHH
Confidence 77778877 556666677899999999999999999996 9999999999998888898999999
Q ss_pred HHHHHhhhhhhhhc
Q 017806 303 TVLYGLAEDTLRTG 316 (365)
Q Consensus 303 ~~~~~~g~~~~a~~ 316 (365)
.|++.+|+..+...
T Consensus 86 ~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 86 LCLNAKGDAEWHVH 99 (153)
T ss_pred HHHHhcCChHHHHH
Confidence 99999998876544
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.74 E-value=0.68 Score=38.58 Aligned_cols=101 Identities=24% Similarity=0.117 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
..++..+|..|...|+ ++.|+++|.++...... -.+.+.++-.+... .+++.....+..
T Consensus 36 r~~~~~l~~~~~~~Gd--------------~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ 97 (177)
T PF10602_consen 36 RMALEDLADHYCKIGD--------------LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHH
Confidence 4678899999999999 99999999998886543 34667777777777 999999996655
Q ss_pred HHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 235 QATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
+|-..... +.+.. ....-|..+...++ |.+|...|-.++.-.
T Consensus 98 ka~~~~~~-----~~d~~~~nrlk~~~gL~~l~~r~----------f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 98 KAESLIEK-----GGDWERRNRLKVYEGLANLAQRD----------FKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHhc-----cchHHHHHHHHHHHHHHHHHhch----------HHHHHHHHHccCcCC
Confidence 55444333 22222 23344566666666 499988888776443
No 316
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.48 E-value=3 Score=32.78 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
.....++++.++.. ..+.++- ++.|..++..++ -.|. ..+..+.|+..+.+++++ +.+++
T Consensus 31 s~~s~f~lAwaLV~----S~~~~dv----~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY----------~~s~~ 92 (149)
T KOG3364|consen 31 SKQSQFNLAWALVR----SRDTEDV----QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY----------SKSLR 92 (149)
T ss_pred hHHHHHHHHHHHHc----ccchHHH----HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH----------HHHHH
Confidence 45678888988877 5444332 233477888886 4454 567889999999999995 99999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 283 KFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 283 ~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+....++..|+|..+....-.+..+..
T Consensus 93 yvd~ll~~e~~n~Qa~~Lk~~ied~it 119 (149)
T KOG3364|consen 93 YVDALLETEPNNRQALELKETIEDKIT 119 (149)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 999999999999988665555544443
No 317
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.41 E-value=0.35 Score=43.27 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 218 (365)
|+.+|.+|+.+.|.++..|+.||.++...|+ .-.|+-+|-+++-..--.+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~--------------~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD--------------DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT---------------HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc--------------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999 9999999999997655568889998888866
No 318
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.36 E-value=1.1 Score=46.94 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=80.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 131 EEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD 207 (365)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 207 (365)
|+++...+.|+.|+..|++.-...|+. .++.+.+|.++..... .......+++|+..|++.. -.|.-+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~ 553 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-------EQGDPRDFTQALSEFSYLH-GGVGAPL 553 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-------hcCChHHHHHHHHHHHHhc-CCCCCch
Confidence 456788899999999999999999976 4678899998876543 1111134888888888753 3556667
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
-|...+.+|.. +|++++-+ ++|.-|++.-|++|..
T Consensus 554 ~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 554 EYLGKALVYQR----LGEYNEEI-------KSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHhHHHHHHH----hhhHHHHH-------HHHHHHHHhcCCCCcc
Confidence 78888888888 99999999 7788888888887654
No 319
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=3.6 Score=40.68 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCccccCCCCchhhhHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLE 189 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~ 189 (365)
..+++.+.-..+-......++..+|..+++.|...+..-|.+ +....++..||..+.. ++
T Consensus 346 TkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--------------LD 411 (872)
T KOG4814|consen 346 TKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--------------LD 411 (872)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--------------HH
Confidence 344444444444444556677899999999999999876654 5567889999999998 99
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.|.+++++|=+.+|.++-.....-.+... .|.-++|+...
T Consensus 412 ~A~E~~~EAE~~d~~~~l~q~~~~~~~~~----E~~Se~AL~~~ 451 (872)
T KOG4814|consen 412 NAVEVYQEAEEVDRQSPLCQLLMLQSFLA----EDKSEEALTCL 451 (872)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHH----hcchHHHHHHH
Confidence 99999999999999998887777777777 88888888653
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.24 E-value=0.45 Score=45.10 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
.|+.-.|-+-...+++..|.++......+.++..+|. |+.+...+.-+=.+-.....+...+-...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--------------ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--------------YEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--------------HHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 3777778888888888999999988889999999999 88888877665544334344444455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
.. +|++++|.. .-.-.+...-.++++...-+..-..+|- ++++.-++++.+.++|.
T Consensus 368 ~~----l~r~~~a~s-------~a~~~l~~eie~~ei~~iaa~sa~~l~~----------~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HG----LARWREALS-------TAEMMLSNEIEDEEVLTVAAGSADALQL----------FDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hc----hhhHHHHHH-------HHHHHhccccCChhheeeecccHHHHhH----------HHHHHHHHHHHhccCCh
Confidence 56 788888773 2333333333344444433333333443 47777777777777654
No 321
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=93.18 E-value=0.98 Score=31.67 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
++.|+..+.+|++.+ . .|++++|+.+|..|+..|..+++..|+.
T Consensus 3 ~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 3 LQKAIELVKKAIEED---------------N----AGNYEEALRLYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 556777777765433 4 8999999999999999999999988754
No 322
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.11 E-value=0.41 Score=42.78 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
|+.+|.+|+.+.|++...|+.||.+... .|+.-.|+ -+|-+++-..--++.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~av-------y~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAV-------YYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999 99999999 67888886665568899999998888
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.08 E-value=1.1 Score=37.55 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=66.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFY 210 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 210 (365)
+..+++++|+..++.++....+. .-+-.+||.+...+|. +++|+..+...-. +. .+...-
T Consensus 100 ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k--------------~D~AL~~L~t~~~--~~w~~~~~e 163 (207)
T COG2976 100 VEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK--------------ADAALKTLDTIKE--ESWAAIVAE 163 (207)
T ss_pred HhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHhcccc--ccHHHHHHH
Confidence 44588999999999988654332 3456788999999999 9999988876432 11 234456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
..|.++.. .|+-++|. ..|.++++.++.
T Consensus 164 lrGDill~----kg~k~~Ar-------~ay~kAl~~~~s 191 (207)
T COG2976 164 LRGDILLA----KGDKQEAR-------AAYEKALESDAS 191 (207)
T ss_pred HhhhHHHH----cCchHHHH-------HHHHHHHHccCC
Confidence 68999999 99999999 678888877644
No 324
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.00 E-value=1.2 Score=31.36 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 189 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
..|+.+..+|++.| . .|+|++|+.+|..|+..|..++...
T Consensus 4 ~~Ai~~a~~Ave~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 4 RDAVQFARLAVQRD---------------Q----EGRYSEAVFYYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHH---------------H----ccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666654 4 9999999999999999999986555
No 325
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=9.1 Score=37.51 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC------
Q 017806 186 ALLEEACKKYDEATRL------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------ 247 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~------ 247 (365)
+.|+++...|.-+... .|.+.+.+..++.+... +|+.+-|-.+.++++-.+.+++.-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~----qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF----QGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH----hcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 6689999999888765 45577889999999999 9999999999999999999987432
Q ss_pred --------CCCHHHH---HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhh-hhhh
Q 017806 248 --------WNSPQAL---NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAE-DTLR 314 (365)
Q Consensus 248 --------p~~~~~~---~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~-~~~a 314 (365)
|.+...| +..-..+.+.|- +..|.++++-.+.++|. ++-+...+-.+|.-..+ +.+-
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC----------~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwi 397 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGC----------WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWI 397 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHH
Confidence 2222222 222233334455 59999999999999998 88777666666655442 2221
Q ss_pred hcC-----cCCCCCCCcchHHHHHHHHHHHHHhc
Q 017806 315 TGG-----TVNPREVSPNELYSQSAIYIAAAHAL 343 (365)
Q Consensus 315 ~~~-----~~~~~~~~~~~~~~~a~~~~~~a~~~ 343 (365)
+.. ....+...|+-.|..+..+|-....-
T Consensus 398 I~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 398 IELSNEPENMNKLSQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred HHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCC
Confidence 111 01123345666676666665544443
No 326
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.50 E-value=7.6 Score=37.27 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhc--CccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 159 DALYNWALVLQESA--DNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 159 ~~~~~lg~~~~~~~--~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.++..+|..+...| + ...+|.|++-.+...|.+ +..+..||.++..- ..+++.|.
T Consensus 8 ~aLlGlAe~~rt~~PPk--------------Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~y---T~N~elAk--- 67 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPK--------------IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRY---TKNVELAK--- 67 (629)
T ss_pred HHHHHHHHHHhhcCChh--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---hccHHHHH---
Confidence 45666777777777 6 999999999999888763 56778888887642 78889998
Q ss_pred HHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 234 KQATKNYEKAVQL---NWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 234 ~~A~~~~~~al~~---~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
.+++++..+ -|++ .++...++.+|....+. +..|...+++++++..+.+.
T Consensus 68 ----sHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s---------~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 68 ----SHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQS---------FPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred ----HHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHhcCCch
Confidence 445555433 2444 45677788898888843 59999999999999877763
No 327
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.20 E-value=13 Score=36.64 Aligned_cols=107 Identities=7% Similarity=-0.107 Sum_probs=89.7
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAI 214 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 214 (365)
..|++....-.|++++---......|...+.-....|+ .+-+-..+.++.++. |..+.+...-+.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~--------------~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD--------------VSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc--------------hhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34888888888888887667788889999998888888 888888888888874 667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.... .|++..|. .++++....-|+...+-.....+..++|+.
T Consensus 375 f~e~----~~n~~~A~-------~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 375 FEES----NGNFDDAK-------VILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHh----hccHHHHH-------HHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 7777 89999999 778888877799988888888888888886
No 328
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.04 E-value=1.8 Score=30.44 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=45.3
Q ss_pred HHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHhcCccccCCCCchhhhHHHHHHHH
Q 017806 118 AAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALV---LQESADNVSLDSTSPSKDALLEEACKK 194 (365)
Q Consensus 118 ~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~---~~~~~~~~~a~~~~~~~~~~~~~A~~~ 194 (365)
.|....++.+.+ +.+.+.++|+..++++++..++..+.|..+|.+ |...|+ |.+.+.+
T Consensus 5 ~ak~~ie~GlkL-----Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk--------------yr~~L~f 65 (80)
T PF10579_consen 5 QAKQQIEKGLKL-----YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK--------------YREMLAF 65 (80)
T ss_pred HHHHHHHHHHHH-----hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 344455555554 345668999999999999988887777766665 455666 8888877
Q ss_pred HHHHHHh
Q 017806 195 YDEATRL 201 (365)
Q Consensus 195 ~~~al~~ 201 (365)
--+=+++
T Consensus 66 A~~Q~~~ 72 (80)
T PF10579_consen 66 ALQQLEI 72 (80)
T ss_pred HHHHHHH
Confidence 6655544
No 329
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=2.8 Score=41.42 Aligned_cols=82 Identities=9% Similarity=-0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 261 (365)
|..+++.|...+..-|.+ +....++..+|.. +.+.+.|. +.++.|-+.+|.++-.....-.+.
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~-------E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAV-------EVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHH-------HHHHHHHhhccccHHHHHHHHHHH
Confidence 999999999999876653 5678889999998 88888888 778889999999998888888888
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
...+.- ++|+.+..+....
T Consensus 439 ~~E~~S----------e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDKS----------EEALTCLQKIKSS 457 (872)
T ss_pred HHhcch----------HHHHHHHHHHHhh
Confidence 888886 8888888776654
No 330
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.32 E-value=0.74 Score=33.84 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
.|+|.+|++.+.+............ -....++.++|.++...|++ ++|+..+++|+++.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLA 71 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHH
Confidence 8999999966655543332221111 02356788999999999997 99999999999884
No 331
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.25 E-value=14 Score=35.25 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHH--HHHHHHH---------hCC---C
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK--KYDEATR---------LCP---T 204 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~--~~~~al~---------~~p---~ 204 (365)
.-++|+..++.+++..+.+..+.+.. ....+. . |.+|+. .+-+.+. +.| .
T Consensus 395 ~dekalnLLk~il~ft~yD~ec~n~v-~~fvKq-~--------------Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNYDIECENIV-FLFVKQ-A--------------YKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHH-HHHHHH-H--------------HHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 37888888888888888776543321 111111 1 333322 1222222 223 3
Q ss_pred CHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 205 LHDAFYNWAIAI--SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 205 ~~~~~~~lg~~~--~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
+.+.-+.|+.+- +. .|+|.++. -+-....+++| ++.++..+|.+++...++ ++|-.
T Consensus 459 e~eian~LaDAEyLys----qgey~kc~-------~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y----------~eA~~ 516 (549)
T PF07079_consen 459 EEEIANFLADAEYLYS----QGEYHKCY-------LYSSWLTKIAP-SPQAYRLLGLCLMENKRY----------QEAWE 516 (549)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHH-------HHHHHHHHhCC-cHHHHHHHHHHHHHHhhH----------HHHHH
Confidence 455666665543 45 88888888 66888889999 899999999999999995 99999
Q ss_pred HHHH
Q 017806 283 KFRA 286 (365)
Q Consensus 283 ~~~~ 286 (365)
++..
T Consensus 517 ~l~~ 520 (549)
T PF07079_consen 517 YLQK 520 (549)
T ss_pred HHHh
Confidence 8875
No 332
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.15 E-value=0.57 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
+++..||.+-.. .++|++|++.|.+|+...++.
T Consensus 2 dv~~~Lgeisle----~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLE----NENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHh
Confidence 567889999999 999999997777777666554
No 333
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=91.05 E-value=2.4 Score=29.74 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
+++|+....+|++. -. .|++++|+.+|..|+..|.+++...|+.
T Consensus 5 ~~~A~~li~~Av~~---------------d~----~g~~~eAl~~Y~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 5 LSKAKELISKALKA---------------DE----AGDYEEALELYKKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 56666666666443 34 8999999999999999999999988763
No 334
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=91.04 E-value=2.4 Score=29.76 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+++|+..+.+|++.+ . .|++++|+.+|..|+..|..+++..++
T Consensus 3 l~~Ai~lv~~Av~~D---------------~----~g~y~eA~~lY~~ale~~~~~~k~e~~ 45 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------Q----RGDAAAALSLYCSALQYFVPALHYETD 45 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 567777777776544 3 899999999999999999999988754
No 335
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=2.2 Score=37.74 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
...++=..+...++ ++.|..+.++.+.++|.++.-+.-.|.+|.+ +|.+..|+ ..
T Consensus 183 ll~~lk~~~~~e~~--------------~~~al~~~~r~l~l~P~dp~eirDrGliY~q----l~c~~vAl-------~d 237 (269)
T COG2912 183 LLRNLKAALLRELQ--------------WELALRVAERLLDLNPEDPYEIRDRGLIYAQ----LGCYHVAL-------ED 237 (269)
T ss_pred HHHHHHHHHHHhhc--------------hHHHHHHHHHHHhhCCCChhhccCcHHHHHh----cCCchhhH-------HH
Confidence 34455556666677 9999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHH
Q 017806 240 YEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~ 259 (365)
++..++.-|+.+.+-.....
T Consensus 238 l~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 238 LSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHhCCCchHHHHHHHH
Confidence 88888889998876554443
No 336
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=17 Score=35.39 Aligned_cols=230 Identities=13% Similarity=0.099 Sum_probs=130.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (365)
....|.++-.++..+.++ ...|+.+.|+..++..+. ... +..-+.+|..|...+......+-...
T Consensus 260 ~~~~p~ga~wll~~ar~l-~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~ 337 (546)
T KOG3783|consen 260 RKRYPKGALWLLMEARIL-SIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH 337 (546)
T ss_pred HHhCCCCccHHHHHHHHH-HHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH
Confidence 456777777788888888 589999999999999888 211 33445789999999998888876665
Q ss_pred HHHHHHH-HHHHHhcCcccc-CCCCchhhhHHHHHHHHHHHHHHhCCCCH--------------------H--HHHHHHH
Q 017806 159 DALYNWA-LVLQESADNVSL-DSTSPSKDALLEEACKKYDEATRLCPTLH--------------------D--AFYNWAI 214 (365)
Q Consensus 159 ~~~~~lg-~~~~~~~~~~~a-~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------~--~~~~lg~ 214 (365)
-.+..++ .|+...++-... .++.....--.+.+...+..|-+-.|-.. . .++.+..
T Consensus 338 a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y 417 (546)
T KOG3783|consen 338 AFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAY 417 (546)
T ss_pred HHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHH
Confidence 5555555 555332221111 11122222222222222222111111111 0 1122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh---c-CCCC-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQ---L-NWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~---~-~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
++-. .......+.. .++..++ . |+++ .-.+..+|.++.++|+. ..|..+|.-+++
T Consensus 418 ~Wng--f~~~s~~~l~--------k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~----------~~a~~~f~i~~~ 477 (546)
T KOG3783|consen 418 FWNG--FSRMSKNELE--------KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDS----------EVAPKCFKIQVE 477 (546)
T ss_pred HHhh--cccCChhhHH--------HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 2211 1111122211 1122221 1 2332 33566789999999997 999999999884
Q ss_pred h---CCC----CHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHH-------HHHHHHH
Q 017806 290 L---QFD----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-------VYSSALR 355 (365)
Q Consensus 290 ~---~p~----~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-------~~~~al~ 355 (365)
. ..+ .|.+++.||..++.++.. ..++..++.+|.....+++ ....|+.
T Consensus 478 ~e~~~~~d~w~~PfA~YElA~l~~~~~g~------------------~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~ 539 (546)
T KOG3783|consen 478 KESKRTEDLWAVPFALYELALLYWDLGGG------------------LKEARALLLKAREYASDYELENRLHMRIQAALH 539 (546)
T ss_pred HHHhhccccccccHHHHHHHHHHHhcccC------------------hHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 3 222 267999999999999851 2667788888888876653 3444555
Q ss_pred hhhhhh
Q 017806 356 LVRSMV 361 (365)
Q Consensus 356 ~~~~~~ 361 (365)
.++..+
T Consensus 540 ~~r~~~ 545 (546)
T KOG3783|consen 540 TVRKLL 545 (546)
T ss_pred HHhccC
Confidence 555544
No 337
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.50 E-value=0.59 Score=27.94 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~ 202 (365)
+++..||.+-...++ |++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~--------------f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENEN--------------FEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHH
Confidence 567889999999999 999999999999874
No 338
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.36 E-value=1.1 Score=26.33 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHH--HHHHHHhCCCC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKK--YDEATRLCPTL 205 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~--~~~al~~~p~~ 205 (365)
+.|+.+|..+...|+ +++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~k--------------y~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGK--------------YDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHhcccC
Confidence 568889999999999 9999999 55888777754
No 339
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.62 E-value=1.3 Score=47.14 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=88.3
Q ss_pred HHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 017806 188 LEEACK------KYDEA-TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGL 259 (365)
Q Consensus 188 ~~~A~~------~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 259 (365)
+.+|.+ .+.+. -.+.|.....+..|+.++.. .|++++|+..-.+|.-..++.+..+ |+....+.+++.
T Consensus 948 ~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 948 FSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred hhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 666666 55432 33478888999999999999 9999999988888888888888776 566788889998
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
.....++. ..|...+.++..+ .|.-+....+++.++...++...+...
T Consensus 1024 ~~f~~~~~----------~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1024 YEFAVKNL----------SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred HHHhccCc----------cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHH
Confidence 88888886 7888888887765 344455667788887777766555443
No 340
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.51 E-value=3.1 Score=30.48 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPT---------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
|..|++.+.+....... ...+..++|.++.. .|++++|+..+++|+...++
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Confidence 99998888888776322 14567889999999 99999999777777666554
No 341
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=89.24 E-value=4 Score=28.46 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
.|++++|+.+|..|+..|..++...|+
T Consensus 19 ~g~~~~Al~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 19 DGNYEEALELYKEALDYLLQALKAEKE 45 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 899999999999999999999988876
No 342
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=89.20 E-value=5.4 Score=27.26 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
.|++++|+.+|..|+..+..+++..++.
T Consensus 18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~~~ 45 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYLMQALKSESNP 45 (69)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 9999999999999999999999988653
No 343
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=89.15 E-value=5.1 Score=28.05 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+.+|+..+.+|++.+ . .|+|++|..+|..++..|..+++..++
T Consensus 3 l~~A~~l~~~Ave~d---------------~----~~~y~eA~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 3 LEQAAELIRLALEKE---------------E----EGDYEAAFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----HhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 566777777776544 3 799999999999999999999988765
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.75 E-value=31 Score=35.81 Aligned_cols=179 Identities=13% Similarity=0.037 Sum_probs=108.9
Q ss_pred HhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------hhhhhhhHHHHHHHHHHHHHhCCCC-----H
Q 017806 103 FSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------GRSRQRILTFAAKRYANAIERNPED-----Y 158 (365)
Q Consensus 103 ~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~A~~~~~~al~~~p~~-----~ 158 (365)
...+... ....++++|.....++...-+. .....|+++.|++..+.++..-|.+ .
T Consensus 419 ll~aW~~-~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 419 LLQAWLL-ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHH-HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 3334444 4667777777777665443322 1234589999999999999987764 4
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC----CCHHHH--HHHHHHHHHHHHhcCCHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP----TLHDAF--YNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~--~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.+...+|.+..-.|+ +++|.....++.++.. .....| ...+.++.. +|+..-+...
T Consensus 498 ~~~sv~~~a~~~~G~--------------~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~----qGq~~~a~~~ 559 (894)
T COG2909 498 VALSVLGEAAHIRGE--------------LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA----QGQVARAEQE 559 (894)
T ss_pred hhhhhhhHHHHHhch--------------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH----hhHHHHHHHH
Confidence 467788888888999 9999999999988732 223333 334666666 7844444332
Q ss_pred HHHHHHHHHH----HHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh----CCC--CHH-HHHHH
Q 017806 233 WKQATKNYEK----AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFD--FHR-AIYNL 301 (365)
Q Consensus 233 ~~~A~~~~~~----al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~-~~~~l 301 (365)
+.|.. -+...|-+.......+.++...-++ +.+.....+.++. .|. ... ++++|
T Consensus 560 -----~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~----------~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 560 -----KAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL----------DLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred -----HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH----------hhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 22322 2333454444444444444444444 5555555555544 222 222 33588
Q ss_pred HHHHHHhhhhhhhh
Q 017806 302 GTVLYGLAEDTLRT 315 (365)
Q Consensus 302 g~~~~~~g~~~~a~ 315 (365)
+.+.+..|+.+.+.
T Consensus 625 A~l~~~~Gdl~~A~ 638 (894)
T COG2909 625 AELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHhcCCHHHHH
Confidence 99999999877654
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.15 E-value=0.73 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
.+.+.+|.++...|+ +++|...+++
T Consensus 2 ~a~~~la~~~~~~G~--------------~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGD--------------PDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHhC
Confidence 467899999999999 9999998763
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.13 E-value=3.3 Score=28.96 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhccChhhhhhh--hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 117 NAAMELINSVTGVDEEGRSRQ--RILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
..|..+..+|+..+..+.+.. -.|.+|++.+.+++...|+++.-......+..-+.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~ 61 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKR 61 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 356677777777766654332 44667777777778888988776555555544433
No 347
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.03 E-value=2.1 Score=25.22 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHHHHhcCCC
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKN--YEKAVQLNWN 249 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~--~~~al~~~p~ 249 (365)
+.++.+|..+.. .|++++|+ +. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~----~~ky~~A~-------~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQ----KGKYDEAI-------HFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHH----TT-HHHHH-------HHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHH----HhhHHHHH-------HHHHHHHHHHhccc
Confidence 568899999999 99999999 66 3355555554
No 348
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.86 E-value=4.7 Score=43.13 Aligned_cols=143 Identities=15% Similarity=0.032 Sum_probs=99.5
Q ss_pred HHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 017806 142 FAAKRYANA-IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNW 212 (365)
Q Consensus 142 ~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 212 (365)
+++..+.+. -.+.|.....+..++.++..+++ +++|+..-.++.-+ .|+....+.++
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d--------------~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD--------------NQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc--------------hHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 333455533 33578889999999999999999 99999998888655 24566788889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
+..... .++...|+..+.+|.....-.. +..|.-+....+++.++...+++ +.|+++.+.|+..+
T Consensus 1022 al~~f~----~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~----------d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1022 ALYEFA----VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA----------DTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHh----ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH----------HHHHHHHHHHHHHH
Confidence 988888 8888888855544433222111 12455567778999999888886 99999999999864
Q ss_pred CC--------CHHHHHHHHHHHHHhhhhh
Q 017806 292 FD--------FHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 292 p~--------~~~~~~~lg~~~~~~g~~~ 312 (365)
-. ....+..++......++..
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence 21 2334455555555555443
No 349
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.32 E-value=11 Score=35.54 Aligned_cols=61 Identities=10% Similarity=-0.047 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
.-.|..||.. +++.+.|+ .+..+.+-++|.++.-+...+.++..+.++ .+|-+.+.-+.
T Consensus 231 etklv~CYL~----~rkpdlAL-------nh~hrsI~lnP~~frnHLrqAavfR~LeRy----------~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLR----MRKPDLAL-------NHSHRSINLNPSYFRNHLRQAAVFRRLERY----------SEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhh----cCCCchHH-------HHHhhhhhcCcchhhHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 4467888888 99999999 888999999999999999999999999996 88777766655
Q ss_pred Hh
Q 017806 289 QL 290 (365)
Q Consensus 289 ~~ 290 (365)
-+
T Consensus 290 ym 291 (569)
T PF15015_consen 290 YM 291 (569)
T ss_pred HH
Confidence 33
No 350
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.26 E-value=4.8 Score=40.29 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
..+|.++|..+..+.. |++|.++|.+.
T Consensus 796 e~A~r~ig~~fa~~~~--------------We~A~~yY~~~ 822 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMME--------------WEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHhc
Confidence 4577777777777777 77777777765
No 351
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.22 E-value=6.2 Score=37.12 Aligned_cols=83 Identities=18% Similarity=0.095 Sum_probs=64.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHhC-----------CC--C-----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERN-----------PE--D-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~-----------p~--~-----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~ 194 (365)
.+++++.|..|+.-|..+|++- |. + ...--.|..||..+++ .+-|+.+
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk--------------pdlALnh 250 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK--------------PDLALNH 250 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC--------------CchHHHH
Confidence 4566777777777777666642 11 1 1123467889999999 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 195 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
--+.|-++|.....+...+.++.. +.+|.+|-..+
T Consensus 251 ~hrsI~lnP~~frnHLrqAavfR~----LeRy~eAarSa 285 (569)
T PF15015_consen 251 SHRSINLNPSYFRNHLRQAAVFRR----LERYSEAARSA 285 (569)
T ss_pred HhhhhhcCcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 999999999999999999999999 99999998553
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.09 E-value=5.5 Score=33.69 Aligned_cols=72 Identities=15% Similarity=0.044 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAI 214 (365)
Q Consensus 140 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~ 214 (365)
-+.|...|-++-... -++++..+.||..|... + .++++..+-+++++.+. +++++..|+.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D--------------~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas 186 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKR-D--------------PEKTIQLLLRALELSNPDDNFNPEILKSLAS 186 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-C--------------HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 355666655443322 25688889999888864 4 89999999999998544 6999999999
Q ss_pred HHHHHHHhcCCHHHHH
Q 017806 215 AISDRAKMRGRTKEAE 230 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~ 230 (365)
++.. +|+++.|-
T Consensus 187 ~~~~----~~~~e~AY 198 (203)
T PF11207_consen 187 IYQK----LKNYEQAY 198 (203)
T ss_pred HHHH----hcchhhhh
Confidence 9999 99998874
No 353
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.50 E-value=7 Score=39.47 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=88.4
Q ss_pred CCChhHhhhcHHHHHHHHHHhhccChh--hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcccc------
Q 017806 106 GNTPHQLAEQNNAAMELINSVTGVDEE--GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL------ 177 (365)
Q Consensus 106 g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a------ 177 (365)
|..+ .+.|+++.|+..|-.+-.+... +-...+++.+|+..+...-..+. ....+-.++.-|...|++..+
T Consensus 713 g~hl-~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 713 GDHL-EQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred hHHH-HHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHh
Confidence 4444 4677788888777655333221 11223455566555544332211 112233344444444442111
Q ss_pred ------CCCCchhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHHHHHH-
Q 017806 178 ------DSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIAISDRAKMRGRTKEAEELW------KQATKNYEKA- 243 (365)
Q Consensus 178 ------~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~g~~~~A~~~~------~~A~~~~~~a- 243 (365)
....+.+.|+|..|...-.+.. .|.. ...|...+.-+.. .|+|.+|.++| ++||..|.+.
T Consensus 791 ~~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedlde----hgkf~eaeqlyiti~~p~~aiqmydk~~ 864 (1636)
T KOG3616|consen 791 ADLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDE----HGKFAEAEQLYITIGEPDKAIQMYDKHG 864 (1636)
T ss_pred cchhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHh----hcchhhhhheeEEccCchHHHHHHHhhC
Confidence 1111222223444444333332 2322 2334445555555 88888888775 5677777653
Q ss_pred -----H----hcCCC-CHHHHHHHHHHHHHhcCcchhHH---hhhHHHHHHHHHH
Q 017806 244 -----V----QLNWN-SPQALNNWGLALQELSAIVPARE---KQTIVRTAISKFR 285 (365)
Q Consensus 244 -----l----~~~p~-~~~~~~~lg~~~~~~~~~~~~~~---~~~~~~~A~~~~~ 285 (365)
+ +..|+ -.+....+|.-|...|+.+.|+. +.|+|..|+..|+
T Consensus 865 ~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk 919 (1636)
T KOG3616|consen 865 LDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYK 919 (1636)
T ss_pred cchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhh
Confidence 1 12233 24677889999999999877775 5566666655544
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.29 E-value=27 Score=32.04 Aligned_cols=104 Identities=23% Similarity=0.047 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-------------
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC------------- 202 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~------------- 202 (365)
+..+..+-++....++++||..+.++..|+.--.. - ..+|...|++|++..
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--T--------------i~~AE~l~k~ALka~e~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT--T--------------IVDAERLFKQALKAGETIYRQSQQCQHQ 259 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--h--------------HHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 34556666777888999999999988887654332 2 556666666665431
Q ss_pred ----------CCCHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcC
Q 017806 203 ----------PTLHDA--FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSA 266 (365)
Q Consensus 203 ----------p~~~~~--~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~ 266 (365)
..+... -..|+.+..+ +|+..+|+ +.++...+..|-. ..++-|+-.++..+.-
T Consensus 260 ~~~~da~~rRDtnvl~YIKRRLAMCARk----lGrlrEA~-------K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 260 SPQHEAQLRRDTNVLVYIKRRLAMCARK----LGRLREAV-------KIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred ccchhhhhhcccchhhHHHHHHHHHHHH----hhhHHHHH-------HHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 112222 3345666666 99999999 6677776666521 2344455555555444
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.04 E-value=0.94 Score=24.33 Aligned_cols=24 Identities=21% Similarity=0.008 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHH
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (365)
.+.+++|.++...|++ ++|...++
T Consensus 2 ~a~~~la~~~~~~G~~----------~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDP----------DEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHh
Confidence 5678999999999997 99988775
No 356
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.83 E-value=6.6 Score=27.50 Aligned_cols=46 Identities=30% Similarity=0.235 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~ 254 (365)
+++|+..+++|+.-| . .|++++|+.+|..|++.|.. +.+|......
T Consensus 3 l~kai~Lv~~A~~eD---------------~----~gny~eA~~lY~~ale~~~~--ekn~~~k~~i 48 (75)
T cd02680 3 LERAHFLVTQAFDED---------------E----KGNAEEAIELYTEAVELCIN--TSNETMDQAL 48 (75)
T ss_pred HHHHHHHHHHHHHhh---------------H----hhhHHHHHHHHHHHHHHHHH--hcChhhHHHH
Confidence 567788888876544 3 89999999999999999887 3455544433
No 357
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=11 Score=39.60 Aligned_cols=31 Identities=6% Similarity=-0.149 Sum_probs=24.2
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhh
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVT 127 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al 127 (365)
-+.+..|..+|...+ +.|...+|++-|-++-
T Consensus 1101 ~n~p~vWsqlakAQL-~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQL-QGGLVKDAIESYIKAD 1131 (1666)
T ss_pred hCChHHHHHHHHHHH-hcCchHHHHHHHHhcC
Confidence 355778888888884 8888999998887663
No 358
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=85.03 E-value=3.2 Score=29.41 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
.|+.|..+..+|+..+. .|+.++|+..|++++..+.+++.+.-
T Consensus 4 ~~~~A~~~I~kaL~~dE-------------------~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 4 YYKQAFEEISKALRADE-------------------WGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHHHHHHHHhhhhh-------------------cCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 37788888888776553 89999999999999999999988753
No 359
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=84.88 E-value=26 Score=30.65 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH---------------HhcC
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRA---------------KMRG 224 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~---------------~~~g 224 (365)
+..++.+..+.|+ |++.+.++++++..++. +.+=.+.|+.+|-... +..+
T Consensus 4 li~~Aklaeq~eR--------------y~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 4 LIYLAKLAEQAER--------------YDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHTTH--------------HHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--------------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 5678888899998 99999999999999876 3344444555543311 1111
Q ss_pred C----HHHHHHHH------------HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 225 R----TKEAEELW------------KQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 225 ~----~~~A~~~~------------~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
+ ....+..| +..+......+--...+ ...+-..|..|..+-.+.....+..-.+.|...|
T Consensus 70 ~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY 149 (236)
T PF00244_consen 70 KGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAY 149 (236)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhh
Confidence 1 11111111 11222222211111112 2234457888877777765555666678899999
Q ss_pred HHHHHh-----CCCCHH---HHHHHHHHHHH-hhhhhhhh
Q 017806 285 RAAIQL-----QFDFHR---AIYNLGTVLYG-LAEDTLRT 315 (365)
Q Consensus 285 ~~al~~-----~p~~~~---~~~~lg~~~~~-~g~~~~a~ 315 (365)
++|+.+ .|.+|- ...|.+..|+. +|+..+|.
T Consensus 150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~ 189 (236)
T PF00244_consen 150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAI 189 (236)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHH
T ss_pred hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998865 577763 44455555544 44444443
No 360
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=84.34 E-value=24 Score=33.71 Aligned_cols=75 Identities=8% Similarity=0.065 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Q 017806 146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 146 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
.|++++...|-.+..|+.-...+...++ -+.|+...++++...|. ....++.++.- ..+
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd--------------~q~al~tv~rg~~~sps---L~~~lse~yel----~nd 348 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISD--------------KQKALKTVERGIEMSPS---LTMFLSEYYEL----VND 348 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccH--------------HHHHHHHHHhcccCCCc---hheeHHHHHhh----ccc
Confidence 4678888888889999988888888888 88888888888877776 55566666655 555
Q ss_pred HHHHHHHHHHHHHHHH
Q 017806 226 TKEAEELWKQATKNYE 241 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~ 241 (365)
-++.-.+|++.+..+.
T Consensus 349 ~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 349 EEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 5555555655444433
No 361
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.09 E-value=16 Score=30.39 Aligned_cols=94 Identities=13% Similarity=-0.104 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
-.++..+|..|.+ .|++++|+ +.|.++...... -.+.+.++-.+....+++ .....
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~-------k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~----------~~v~~ 94 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEAL-------KAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW----------SHVEK 94 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHH-------HHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH----------HHHHH
Confidence 4678899999999 99999999 566665544322 246777778888888886 88888
Q ss_pred HHHHHHHhC--CCCHHH----HHHHHHHHHHhhhhhhhhcCcCC
Q 017806 283 KFRAAIQLQ--FDFHRA----IYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 283 ~~~~al~~~--p~~~~~----~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
+..++-.+- ..++.. ...-|..+...+++..+...+..
T Consensus 95 ~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 95 YIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 878776653 233322 22335555666666665554433
No 362
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.96 E-value=2 Score=39.27 Aligned_cols=113 Identities=18% Similarity=0.029 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHhc
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-------------------TLHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~~~~~ 223 (365)
+.|...+..++ |+.|..-|.+++..-. .-...+.+++.+-.. .
T Consensus 227 ~~~~~~~kk~~--------------~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk----~ 288 (372)
T KOG0546|consen 227 NIGNKEFKKQR--------------YREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLK----V 288 (372)
T ss_pred ccchhhhhhcc--------------HhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccc----c
Confidence 44555666677 8888888888765311 112345566777777 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
+.+..|+ ..-..+++.++....+++.++..+....++ ++|++.++.+....|++..+...+..
T Consensus 289 ~~~~~a~-------~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~----------~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 289 KGRGGAR-------FRTNEALRDERSKTKAHYRRGQAYKLLKNY----------DEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred cCCCcce-------eccccccccChhhCcHHHHHHhHHHhhhch----------hhhHHHHHHhhccCcchHHHHHHHHH
Confidence 8888887 555566778888999999999999999996 99999999999999999887776666
Q ss_pred HHHHhhh
Q 017806 304 VLYGLAE 310 (365)
Q Consensus 304 ~~~~~g~ 310 (365)
+-....+
T Consensus 352 ~~~~~~~ 358 (372)
T KOG0546|consen 352 VRQKKKQ 358 (372)
T ss_pred hhhHHHH
Confidence 5555443
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.78 E-value=59 Score=33.85 Aligned_cols=169 Identities=15% Similarity=0.042 Sum_probs=107.0
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHH----------------HHhCC---
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANA----------------IERNP--- 155 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~a----------------l~~~p--- 155 (365)
.+...+.+..-...+ ...|..++||++.-+| |+++.|.+..++. +..-|
T Consensus 343 ~~~~~~lH~~Aa~w~-~~~g~~~eAI~hAlaA-----------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~ 410 (894)
T COG2909 343 AARLKELHRAAAEWF-AEHGLPSEAIDHALAA-----------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAEL 410 (894)
T ss_pred CCchhHHHHHHHHHH-HhCCChHHHHHHHHhC-----------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHH
Confidence 344455565555555 4778888888766544 3344444433332 11222
Q ss_pred --CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHhcC
Q 017806 156 --EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------LHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 156 --~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~~~~~g 224 (365)
.++..-...++......+ +.+|..+..++-..-+. .+...--.|.+... .|
T Consensus 411 l~~~P~Lvll~aW~~~s~~r--------------~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~----~~ 472 (894)
T COG2909 411 LASTPRLVLLQAWLLASQHR--------------LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN----RG 472 (894)
T ss_pred HhhCchHHHHHHHHHHHccC--------------hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh----cC
Confidence 234455566677777777 99999888887665433 23445556777777 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC----CCCH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWN-----SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ----FDFH 295 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~ 295 (365)
+.++|+ +..+.++..-|. ...++..+|.+..-.|++ ++|..+.+++.++. .-+-
T Consensus 473 ~~e~a~-------~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~----------~~Al~~~~~a~~~a~~~~~~~l 535 (894)
T COG2909 473 DPEEAE-------DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGEL----------TQALALMQQAEQMARQHDVYHL 535 (894)
T ss_pred CHHHHH-------HHHHHHHHhcccccchhhhhhhhhhhHHHHHhchH----------HHHHHHHHHHHHHHHHcccHHH
Confidence 999999 556666665554 346777888889889986 99999999888873 2222
Q ss_pred HH--HHHHHHHHHHhhh
Q 017806 296 RA--IYNLGTVLYGLAE 310 (365)
Q Consensus 296 ~~--~~~lg~~~~~~g~ 310 (365)
.+ ....+.++...|+
T Consensus 536 ~~~~~~~~s~il~~qGq 552 (894)
T COG2909 536 ALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 33 3334666677773
No 364
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.64 E-value=3.2 Score=22.88 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
|+.+.+...|++++...|.+...|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 457889999999999999999998876543
No 365
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.46 E-value=44 Score=32.11 Aligned_cols=107 Identities=10% Similarity=-0.090 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh---------cCC---CCHHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ---------LNW---NSPQALN 255 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~---------~~p---~~~~~~~ 255 (365)
-++|+..++-++...+.+..+-+..-... ...|.+|+.. +.+.+.+. +-| .+.+.-+
T Consensus 396 dekalnLLk~il~ft~yD~ec~n~v~~fv------Kq~Y~qaLs~-----~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNYDIECENIVFLFV------KQAYKQALSM-----HAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHH------HHHHHHHHhh-----hhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 67899999999999988875544322222 3345555543 22333222 222 2344444
Q ss_pred HHHH--HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 256 NWGL--ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 256 ~lg~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
-++. -++..|+ |.++.-+-.-..+++| .+.++..+|.|++...+..+|-+
T Consensus 465 ~LaDAEyLysqge----------y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 465 FLADAEYLYSQGE----------YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHhccc----------HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 4443 3455666 5999999999999999 79999999999999886654443
No 366
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.34 E-value=2.7 Score=23.17 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
+++.+...|++++...|.+...|......
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 46899999999999999999998876654
No 367
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=83.20 E-value=42 Score=31.70 Aligned_cols=123 Identities=12% Similarity=-0.036 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-----C
Q 017806 138 RILTFAAKRYANAIER---------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-----P 203 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-----p 203 (365)
+++.+|..+-...+.. |--.+..|+.+..+|...|+ ...-...+...+... .
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~--------------l~~~rs~l~~~lrtAtLrhd~ 205 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGR--------------LADIRSFLHALLRTATLRHDE 205 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc--------------hHHHHHHHHHHHHHhhhcCcc
Confidence 5566666555544331 11125567888888888887 555454444444331 1
Q ss_pred -CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 204 -TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL----NWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 204 -~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
.-+-..+.|-..|.. .+.|+.|. +...++.-- +...+..++.+|.+..-+.++ .
T Consensus 206 e~qavLiN~LLr~yL~----n~lydqa~-------~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldY----------s 264 (493)
T KOG2581|consen 206 EGQAVLINLLLRNYLH----NKLYDQAD-------KLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDY----------S 264 (493)
T ss_pred hhHHHHHHHHHHHHhh----hHHHHHHH-------HHhhcccCccccccHHHHHHHHHHhhHHHhhcch----------h
Confidence 123344555556666 77788877 555554411 113456777888888888885 9
Q ss_pred HHHHHHHHHHHhCCCCH
Q 017806 279 TAISKFRAAIQLQFDFH 295 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~~ 295 (365)
.|.++|-+|+...|++.
T Consensus 265 sA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 265 SALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhCcchh
Confidence 99999999999999853
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.13 E-value=14 Score=33.18 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
--+..|...|. +.+|++..++++.++|-+...|..|-.++.. .|+--.+++-|++--+.+++
T Consensus 284 kva~~yle~g~--------------~neAi~l~qr~ltldpL~e~~nk~lm~~la~----~gD~is~~khyerya~vlea 345 (361)
T COG3947 284 KVARAYLEAGK--------------PNEAIQLHQRALTLDPLSEQDNKGLMASLAT----LGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHcCC--------------hHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----hccchhhhhHHHHHHHHHHH
Confidence 34455666777 9999999999999999999999999999999 99999999655543333333
Q ss_pred HHhcC
Q 017806 243 AVQLN 247 (365)
Q Consensus 243 al~~~ 247 (365)
-+.++
T Consensus 346 elgi~ 350 (361)
T COG3947 346 ELGID 350 (361)
T ss_pred HhCCC
Confidence 34343
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.65 E-value=4 Score=36.52 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=49.9
Q ss_pred HHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 121 ELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 121 ~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
..|.+.+..-...+...|.+.+|+++.++++.++|-+...+..+-.++..+|+ --.++.+|++-
T Consensus 276 ~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD--------------~is~~khyery 339 (361)
T COG3947 276 QLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD--------------EISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc--------------chhhhhHHHHH
Confidence 33333333333345566999999999999999999999999999999999999 66777777664
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.58 E-value=8.8 Score=34.40 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
...++..++..+.. .|+++.++ ..+++.+..+|-+-..|..+=.+|...|+. ..|+..|
T Consensus 152 ~~~~l~~lae~~~~----~~~~~~~~-------~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y 210 (280)
T COG3629 152 FIKALTKLAEALIA----CGRADAVI-------EHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHHHh----cccHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHH
Confidence 35567778888888 88888888 889999999999999999999999999997 8888888
Q ss_pred HHHHHh
Q 017806 285 RAAIQL 290 (365)
Q Consensus 285 ~~al~~ 290 (365)
++.-..
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 887663
No 371
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.80 E-value=33 Score=35.30 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
+..++=+..++.-+.+++.....+..|-.+++..|+ +++-...-.++-++.|.++..|.....-..
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~d--------------l~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~ 158 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGD--------------LEKLRQARLEMSEIAPLPPHLWLEWLKDEL 158 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcc--------------hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 344556777888888999999999999999999999 888888888888889999998888777665
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.... .+.-.++. ..|++++. |-+++..|...+..+...+.. ..+.++|+.-...|.+++.-
T Consensus 159 ~mt~-s~~~~~v~-------~~~ekal~-dy~~v~iw~e~~~y~~~~~~~---~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 159 SMTQ-SEERKEVE-------ELFEKALG-DYNSVPIWEEVVNYLVGFGNV---AKKSEDYKKERSVFERALRS 219 (881)
T ss_pred hhcc-CcchhHHH-------HHHHHHhc-ccccchHHHHHHHHHHhcccc---ccccccchhhhHHHHHHHhh
Confidence 5211 25555666 45666654 446677888877777766652 33556678888888888865
No 372
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.80 E-value=29 Score=28.84 Aligned_cols=127 Identities=10% Similarity=0.106 Sum_probs=86.3
Q ss_pred hhhcHHHHHHHHHHhhccChh------------hhhhhhhHHHHHHHHHHHHHhCC--CCH--HHHHHHHHHHHHhcCcc
Q 017806 112 LAEQNNAAMELINSVTGVDEE------------GRSRQRILTFAAKRYANAIERNP--EDY--DALYNWALVLQESADNV 175 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~A~~~~~~al~~~p--~~~--~~~~~lg~~~~~~~~~~ 175 (365)
+.+..++|+..|...-.-.-. .....|+-..|+..|..+-...| .-. .+...-+.++...|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs-- 147 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS-- 147 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc--
Confidence 667778888877766544422 12334888999999988876543 222 234445566667777
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 017806 176 SLDSTSPSKDALLEEACKKYDEAT-RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 176 ~a~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~ 254 (365)
|++-..-.+..- .-+|-...+.-.||.+-.+ .|++..|. ++|..... |.+.+...
T Consensus 148 ------------y~dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~-------~~F~qia~-Da~aprni 203 (221)
T COG4649 148 ------------YDDVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAK-------SWFVQIAN-DAQAPRNI 203 (221)
T ss_pred ------------HHHHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHH-------HHHHHHHc-cccCcHHH
Confidence 887666555432 2355567788889999999 99999999 77887655 66677777
Q ss_pred HHHHHHHHHh
Q 017806 255 NNWGLALQEL 264 (365)
Q Consensus 255 ~~lg~~~~~~ 264 (365)
.+++.+.+.+
T Consensus 204 rqRAq~mldl 213 (221)
T COG4649 204 RQRAQIMLDL 213 (221)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.71 E-value=16 Score=25.83 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHhcCCHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIA---ISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~---~~~~~~~~g~~~~A~~~ 232 (365)
.++|+..++++++..++..+-+.-||.+ |.. .|+|.+.+.+
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e----~Gkyr~~L~f 65 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHME----WGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 9999999999999998887777666654 455 8888888754
No 374
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.48 E-value=40 Score=30.32 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH----------------
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---------------- 272 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~---------------- 272 (365)
-..+..++++ .|+|.+|+.....-+..+.+ +...++-..++..=..+|....+......
T Consensus 128 e~Kli~l~y~----~~~YsdalalIn~ll~ElKk-~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp 202 (421)
T COG5159 128 ECKLIYLLYK----TGKYSDALALINPLLHELKK-YDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP 202 (421)
T ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHHHHHh-hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH
Confidence 3456777777 99999999765544444433 22234445555555555555555421111
Q ss_pred ---------------hhhHHHHHHHHHHHHHHhCC---CCHHH-----HHHHHHHHHHhhhhhhhhc
Q 017806 273 ---------------KQTIVRTAISKFRAAIQLQF---DFHRA-----IYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 273 ---------------~~~~~~~A~~~~~~al~~~p---~~~~~-----~~~lg~~~~~~g~~~~a~~ 316 (365)
...+|..|..+|-++++-.. .+..+ |..|..++.+.-+..++..
T Consensus 203 qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl 269 (421)
T COG5159 203 QLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVL 269 (421)
T ss_pred HHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34678999999999987532 23333 3344555555544444433
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.23 E-value=20 Score=31.84 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=83.0
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcC
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ-ESAD 173 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~ 173 (365)
.-++++.+..+|..++ ..|++.+|..+|-.+- ++... ....-.+.-..+-.|...+.+..++.+.+ .+++
T Consensus 86 ~~Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~--~~~~~------~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n 156 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLW-KEGNYYEAERHFLLGT--DPSAF------AYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN 156 (260)
T ss_dssp TT--HHHHHHHHHHHH-HTT-HHHHHHHHHTS---HHHHH------HHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB
T ss_pred CCCCHHHHHHHHHHHH-hhccHHHHHHHHHhcC--ChhHH------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Confidence 3467888999999996 9999999998887431 11111 11111223334567888888888876644 5577
Q ss_pred ccccCCCCchhhhHHHHHHHHHHHHHHh----CC----------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 174 NVSLDSTSPSKDALLEEACKKYDEATRL----CP----------TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 174 ~~~a~~~~~~~~~~~~~A~~~~~~al~~----~p----------~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
...|...+...++. .| .....++.+..+...+ . .+ +...|..-...
T Consensus 157 --------------~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~-e-~~----~~~~F~~L~~~ 216 (260)
T PF04190_consen 157 --------------LRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTC-E-RD----NLPLFKKLCEK 216 (260)
T ss_dssp --------------HHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHH-H-HT-----HHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHH-h-cC----cHHHHHHHHHH
Confidence 88888877766655 33 2333344444333331 0 22 34567777788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
|...|+.+|.....+..+|..|+....
T Consensus 217 Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 217 YKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp THH---HHHHTHHHHHHHHHHHH---S
T ss_pred hCccccccHHHHHHHHHHHHHHCCCCC
Confidence 888898899999999999999998665
No 376
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=80.72 E-value=22 Score=27.86 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH---------HHHhCCCCHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE---------ATRLCPTLHDA 208 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~---------al~~~p~~~~~ 208 (365)
+.....+.+++..+..++.++..+..+..+|.... ..+.+..++. ++.+... ...
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~---------------~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l 84 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD---------------PQKEIERLDNKSNHYDIEKVGKLCEK-AKL 84 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC---------------HHHHHHHHHhccccCCHHHHHHHHHH-cCc
Confidence 34677788888888877777777888888887654 3444555552 1111111 112
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQ 262 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 262 (365)
|.....++.+ .|.+.+|+..+=.-+..++.+++. ..++++.|..++..+.
T Consensus 85 ~~~~~~l~~k----~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKK----DGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHh----hcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444455555 777777776532211122222221 1346667776665544
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.93 E-value=37 Score=30.30 Aligned_cols=111 Identities=11% Similarity=0.040 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----CCC-CHH
Q 017806 138 RILTFAAKRYANAIERNPEDY----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPT-LHD 207 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~ 207 (365)
.+.++|+..|++++++.+.-. .++..+-.+++.+++ |++-...|.+.+.. ..+ ...
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~--------------~~eMm~~Y~qlLTYIkSAVTrNySEK 106 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN--------------YKEMMERYKQLLTYIKSAVTRNYSEK 106 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc--------------HHHHHHHHHHHHHHHHHHHhccccHH
Confidence 356777777777777766543 355566667777887 88877777777653 111 122
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
..+.+-..-.. ..+.+--...|+.-++.++.|-. +.-....-..+|.+|+..+++
T Consensus 107 sIN~IlDyiSt----S~~m~LLQ~FYeTTL~ALkdAKN-eRLWFKTNtKLgkl~fd~~e~ 161 (440)
T KOG1464|consen 107 SINSILDYIST----SKNMDLLQEFYETTLDALKDAKN-ERLWFKTNTKLGKLYFDRGEY 161 (440)
T ss_pred HHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHhhhc-ceeeeeccchHhhhheeHHHH
Confidence 22222221122 34444444445544454444311 111122334578888887776
No 378
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.85 E-value=67 Score=31.84 Aligned_cols=161 Identities=7% Similarity=0.023 Sum_probs=111.9
Q ss_pred HHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHhcCccccCCCCchhhhHH
Q 017806 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPE---DYDALYNWALVLQESADNVSLDSTSPSKDALL 188 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~ 188 (365)
+++...+.+.+......+.......+.+..|+..++. .|. ....|......-...|+ +
T Consensus 248 ~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~--------------~ 313 (577)
T KOG1258|consen 248 TEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD--------------F 313 (577)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc--------------H
Confidence 3333344444443333343444455566666666652 233 34456666666667788 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCc
Q 017806 189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 189 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 267 (365)
+...-.|++++--.......|.+.+.-+.. .|+..-|- ..+.++.++. |+.+.+....+..--..|++
T Consensus 314 ~~~~~l~ercli~cA~Y~efWiky~~~m~~----~~~~~~~~-------~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 314 SRVFILFERCLIPCALYDEFWIKYARWMES----SGDVSLAN-------NVLARACKIHVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHHHHHHHH----cCchhHHH-------HHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence 999999999998888899999999999999 89988888 4455555554 66777877778877778886
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
..|...+++..+--|+...+-.........+|...
T Consensus 383 ----------~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 383 ----------DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred ----------HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence 99999999999877888766555555555555443
No 379
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.99 E-value=25 Score=31.33 Aligned_cols=58 Identities=22% Similarity=0.165 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHD----AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
.++|+..|++.+++.+.-.+ ++...-.+.+. +|+|++-++.|.+-+.+...|+..+-.
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~----l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR----LGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999987543 45566677777 999999999999998988888877654
No 380
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.72 E-value=34 Score=33.03 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
++...|..||......|+ ++-|..+|+++
T Consensus 345 ~~~~~W~~Lg~~AL~~g~--------------~~lAe~c~~k~ 373 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGN--------------IELAEECYQKA 373 (443)
T ss_dssp STHHHHHHHHHHHHHTTB--------------HHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHcCC--------------HHHHHHHHHhh
Confidence 345566666666666666 66666666654
No 381
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.47 E-value=46 Score=38.48 Aligned_cols=138 Identities=20% Similarity=0.078 Sum_probs=91.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCC-------HHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTL-------HDA 208 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~-------~~~ 208 (365)
.|.++.|..+.-.|.+.. -+.+....|..++..|+ -..|+..+++.++++ |++ +..
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd--------------~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGD--------------ELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhhcccccCCccccchh
Confidence 388899988888888776 57788999999999999 999999999999764 220 111
Q ss_pred --HHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc--chhHHhhhHHHH---
Q 017806 209 --FYNWAIAISDRAKMRGRTKEAEELW--KQATKNYEKAVQLNWNSPQALNNWGLALQELSAI--VPAREKQTIVRT--- 279 (365)
Q Consensus 209 --~~~lg~~~~~~~~~~g~~~~A~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--~~~~~~~~~~~~--- 279 (365)
..-.+.+... .++|-+.-..+ +.-++.|..+.++.|..-+.++.+|.-|.+.-.. ....++.|++..
T Consensus 1747 ~n~~i~~~~~L~----~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~ 1822 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLK----ITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK 1822 (2382)
T ss_pred hhhhhhhhHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH
Confidence 1111112222 22332222211 1235889999999998888888888555443221 234457777777
Q ss_pred HHHHHHHHHHhCCCC
Q 017806 280 AISKFRAAIQLQFDF 294 (365)
Q Consensus 280 A~~~~~~al~~~p~~ 294 (365)
++-.|.+++..+..+
T Consensus 1823 ~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1823 AIYFFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHHHHHhcchh
Confidence 777778888776444
No 382
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.40 E-value=4.4 Score=28.38 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHh
Q 017806 115 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 153 (365)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~ 153 (365)
+.++|+.+..+|+..|.. |+|++|+.+|.++++.
T Consensus 2 ~l~kai~Lv~~A~~eD~~-----gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDEDEK-----GNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhhHh-----hhHHHHHHHHHHHHHH
Confidence 356888888888776554 4589999999988875
No 383
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=78.28 E-value=2.6 Score=38.59 Aligned_cols=84 Identities=20% Similarity=0.019 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
.....+++.+-...+. +..|+.....++..++....+++.+|..+.. ..++++|+
T Consensus 275 ~~~~~n~~~~~lk~~~--------------~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~----~~~~~~a~------- 329 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKG--------------RGGARFRTNEALRDERSKTKAHYRRGQAYKL----LKNYDEAL------- 329 (372)
T ss_pred cccccchHHhcccccC--------------CCcceeccccccccChhhCcHHHHHHhHHHh----hhchhhhH-------
Confidence 3345567777777777 8888888888888888889999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
.++..+....|++..+...+..+-....+
T Consensus 330 ~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 330 EDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred HHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 88999999999988877666655555444
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.17 E-value=76 Score=36.86 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
...++.|...|.+....|+ ++.|..+.-+|.+.. -+.++...+..+-. .|+-..|+..
T Consensus 1667 ~~~ge~wLqsAriaR~aG~--------------~q~A~nall~A~e~r--~~~i~~E~AK~lW~----~gd~~~Al~~-- 1724 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGH--------------LQRAQNALLNAKESR--LPEIVLERAKLLWQ----TGDELNALSV-- 1724 (2382)
T ss_pred chhHHHHHHHHHHHHhccc--------------HHHHHHHHHhhhhcc--cchHHHHHHHHHHh----hccHHHHHHH--
Confidence 3457889999999999999 999999999998877 57889999999999 9999999955
Q ss_pred HHHHHHHHHHhcC-CC----------C------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 235 QATKNYEKAVQLN-WN----------S------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 235 ~A~~~~~~al~~~-p~----------~------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
++..+..+ |+ . ..+...++......+++ .-..-+.+|+.+.++.|..-..
T Consensus 1725 -----Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~--------~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1725 -----LQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNF--------ESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred -----HHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcch--------hHHHHHHHHHHHHHHcccccCc
Confidence 55555332 11 1 12344455555555553 1246678999999999988888
Q ss_pred HHHHHHHHHHhhhh
Q 017806 298 IYNLGTVLYGLAED 311 (365)
Q Consensus 298 ~~~lg~~~~~~g~~ 311 (365)
++.+|..|.++-..
T Consensus 1792 hy~l~~yy~kll~~ 1805 (2382)
T KOG0890|consen 1792 HYHLGKYYDKLLED 1805 (2382)
T ss_pred eeeHHHHHHHHhhh
Confidence 99999777665533
No 385
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.13 E-value=18 Score=32.20 Aligned_cols=145 Identities=9% Similarity=-0.015 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQES--ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
++.-++.+..+++.+|.+...|..+-.++..- .+ +..-....++.++.|+.|.-.|..+-.++.
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~--------------~~rEl~itkklld~DsrNyH~W~YR~~vl~ 155 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPS--------------WGRELFITKKLLDSDSRNYHVWSYRRWVLR 155 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcc--------------cchhHHHHHHHhcccccccceeeeEeeeee
Confidence 56667779999999999999999998888775 44 788888899999999998877766555442
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ---ELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
. ....+++... ++.+++-..++.-|+.+..+|.+.-.... ..|+. -.+..+++-+++...++-.+|++
T Consensus 156 ~-ie~~~N~S~~----k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v----isqk~l~~eL~~i~~~if~~p~~ 226 (328)
T COG5536 156 T-IEDLFNFSDL----KHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV----ISQKYLEKELEYIFDKIFTDPDN 226 (328)
T ss_pred c-chhhccchhH----HHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc----chHHHHHHHHHHHHhhhhcCccc
Confidence 1 0113333332 23335566678889999999998844333 33432 11113677788888888889999
Q ss_pred HHHHHHHHHHHHH
Q 017806 295 HRAIYNLGTVLYG 307 (365)
Q Consensus 295 ~~~~~~lg~~~~~ 307 (365)
..+|..+-.+...
T Consensus 227 ~S~w~y~r~~~~~ 239 (328)
T COG5536 227 QSVWGYLRGVSSE 239 (328)
T ss_pred cchhhHHHHHhcc
Confidence 8888877665544
No 386
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.00 E-value=76 Score=31.46 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----
Q 017806 138 RILTFAAKRYANAIER------------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---- 201 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---- 201 (365)
..|++|...|.-+... .|.+.+.+..++.++..+|+. ....+..+.|+=.|++++.-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~-------e~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDR-------EMAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHHHHhcccccc
Confidence 6688888888877653 477889999999999999981 11223344455555555431
Q ss_pred ----------CCCCHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCc
Q 017806 202 ----------CPTLHDA---FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQELSAI 267 (365)
Q Consensus 202 ----------~p~~~~~---~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~ 267 (365)
.|.|-.. .+..-..+.+ .|-+..|. .++.-.+.++|. ++-+...+-..|.-..+-
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~----RGC~rTA~-------E~cKlllsLdp~eDPl~~l~~ID~~ALrare 393 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQ----RGCWRTAL-------EWCKLLLSLDPSEDPLGILYLIDIYALRARE 393 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHh----cCChHHHH-------HHHHHHhhcCCcCCchhHHHHHHHHHHHHHh
Confidence 2222221 2222222233 67777777 889999999998 776666555555544432
Q ss_pred chhHHhhhHHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHhhhh
Q 017806 268 VPAREKQTIVRTAISKFRAAI-----QLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al-----~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
|+=-|+.++..- ..-|+. -+.++.+++-+...
T Consensus 394 ---------YqwiI~~~~~~e~~n~l~~~PN~---~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 394 ---------YQWIIELSNEPENMNKLSQLPNF---GYSLALARFFLRKN 430 (665)
T ss_pred ---------HHHHHHHHHHHHhhccHhhcCCc---hHHHHHHHHHHhcC
Confidence 455555555542 223443 45566666655533
No 387
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=77.92 E-value=4.1 Score=28.84 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=26.6
Q ss_pred hcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHh
Q 017806 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 153 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~ 153 (365)
+.|+.|....++++..+..+ +.++|+.+|++++..
T Consensus 3 ~~~~~A~~~I~kaL~~dE~g-----~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 3 GYYKQAFEEISKALRADEWG-----DKEQALAHYRKGLRE 37 (79)
T ss_pred hHHHHHHHHHHHHhhhhhcC-----CHHHHHHHHHHHHHH
Confidence 56788999999998887764 477777777777663
No 388
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.89 E-value=26 Score=33.03 Aligned_cols=113 Identities=17% Similarity=0.056 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
-.++..+|.-|...|+ ++.|+.+|.++...... ....|.++-.+-.. .|+|.....+-.
T Consensus 150 Rra~~Dl~dhy~~cG~--------------l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~----~~nw~hv~sy~~ 211 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQ--------------LDNALRCYSRARDYCTSAKHVINMCLNLILVSIY----MGNWGHVLSYIS 211 (466)
T ss_pred HHHHHHHHHHHHHhcc--------------HHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHh----hcchhhhhhHHH
Confidence 4578889999999999 99999999997766544 34567777777788 999999987777
Q ss_pred HHHHH----HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 017806 235 QATKN----YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNL 301 (365)
Q Consensus 235 ~A~~~----~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 301 (365)
+|... -+.+-+. | +.+...-|.+...+++ |..|..+|-.+.-- .|.+..+|..|
T Consensus 212 ~A~st~~~~~~~~q~v-~--~kl~C~agLa~L~lkk----------yk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL 277 (466)
T KOG0686|consen 212 KAESTPDANENLAQEV-P--AKLKCAAGLANLLLKK----------YKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL 277 (466)
T ss_pred HHHhCchhhhhHHHhc-C--cchHHHHHHHHHHHHH----------HHHHHHHHHhCCCCccCccceecchhhHHHHhh
Confidence 76555 2222222 2 2355556666666667 48888888776532 35555555444
No 389
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=76.99 E-value=20 Score=25.17 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhccChhhhhhh--hhHHHHHHHHHHHHHhCCCCH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQ--RILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~ 158 (365)
-..|+.+..+|+..+..+.+.. ..|.+|++.|..+++..|+..
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 3567777888877765544222 334555555666666666543
No 390
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.81 E-value=36 Score=26.61 Aligned_cols=108 Identities=13% Similarity=-0.020 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK--NYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
....+.+++..+..++.++..+..+..+|.. .. ....+..+..-.. ...+++.+-.. ...|-....+|.+.|
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~----~~-~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l~~~~~~l~~k~~ 96 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAK----YD-PQKEIERLDNKSNHYDIEKVGKLCEK-AKLYEEAVELYKKDG 96 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHH----HC-HHHHHHHHHhccccCCHHHHHHHHHH-cCcHHHHHHHHHhhc
Confidence 8899999999999988888899999998877 43 3344433321000 01111111111 122444555666667
Q ss_pred CcchhHH----hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 266 AIVPARE----KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 266 ~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
++.+|.. ..++++.|++++.+ +.++..|..++..+.
T Consensus 97 ~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 97 NFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7644443 22455666665554 345666666665544
No 391
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.53 E-value=21 Score=32.30 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhcC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA-LNNWGLALQELSA 266 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~~~ 266 (365)
.++||+...+|+..+. .++|++|..+|..|+++|..+++..-+...+ -.-.+.+...+.+
T Consensus 7 l~kaI~lv~kA~~eD~-------------------a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdR 67 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN-------------------AKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDR 67 (439)
T ss_pred HHHHHHHHHHHhhhcc-------------------hhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHH
Confidence 6788888888877552 7899999999999999999999877544422 2233445555544
No 392
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.28 E-value=84 Score=32.52 Aligned_cols=105 Identities=8% Similarity=0.047 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.++-|..++.-+.+++.+...+..|-.++.. .|++++-. ..-+.+.++.|..+..|..+..-...+..-
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk----~~dl~kl~-------~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s 163 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRK----LGDLEKLR-------QARLEMSEIAPLPPHLWLEWLKDELSMTQS 163 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHH----hcchHHHH-------HHHHHHHHhcCCChHHHHHHHHHHHhhccC
Confidence 6677888888899999999999999999999 99998877 556777788899999999887766655442
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+...++...|++++. +-++...|...+..+...+..
T Consensus 164 -------~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~ 199 (881)
T KOG0128|consen 164 -------EERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNV 199 (881)
T ss_pred -------cchhHHHHHHHHHhc-ccccchHHHHHHHHHHhcccc
Confidence 335888899999985 556677888888777766643
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.96 E-value=32 Score=34.18 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccChhh------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHH
Q 017806 117 NAAMELINSVTGVDEEG------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~ 190 (365)
-+...+.++|+.+.++. ....|+++.|.+...+ .++..-|..||.+....++ +..
T Consensus 624 le~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~--------------l~l 684 (794)
T KOG0276|consen 624 LESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE--------------LPL 684 (794)
T ss_pred hhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc--------------chh
Confidence 34444455555555441 2334777777664433 3567779999999999999 999
Q ss_pred HHHHHHHHHH
Q 017806 191 ACKKYDEATR 200 (365)
Q Consensus 191 A~~~~~~al~ 200 (365)
|.+||.++..
T Consensus 685 A~EC~~~a~d 694 (794)
T KOG0276|consen 685 ASECFLRARD 694 (794)
T ss_pred HHHHHHhhcc
Confidence 9999999854
No 394
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.84 E-value=18 Score=34.33 Aligned_cols=85 Identities=12% Similarity=-0.007 Sum_probs=56.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---------CCCCH------HHHHHHHH
Q 017806 150 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---------CPTLH------DAFYNWAI 214 (365)
Q Consensus 150 al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---------~p~~~------~~~~~lg~ 214 (365)
.|+.--+.+-.-..+-+||+.+.+ ....+....++..|...|.++..- .+..+ ..+..-|.
T Consensus 200 lLe~VDNyallnLDIVWCYfrLkn----itcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV 275 (568)
T KOG2561|consen 200 LLELVDNYALLNLDIVWCYFRLKN----ITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGV 275 (568)
T ss_pred HHHhhcchhhhhcchhheehhhcc----cccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHH
Confidence 344334445555677888988877 344455556677788877776432 12222 34555688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
+.+. +|+-++|.+.++.|...+..
T Consensus 276 ~~yH----qg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 276 VAYH----QGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred HHHH----cCCcHHHHHHHHHHHHHHHH
Confidence 8888 99999999998888766654
No 395
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=74.29 E-value=66 Score=28.89 Aligned_cols=78 Identities=15% Similarity=0.008 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--h---------cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAK--M---------RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~---------~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
.-.+.++.=++..|++.-++..+|..+..++- | ..++..+...+++|+.++.+|+.++|+...++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 34566666677899999999999999887551 1 223445556688999999999999999999999888
Q ss_pred HHHHHhcCc
Q 017806 259 LALQELSAI 267 (365)
Q Consensus 259 ~~~~~~~~~ 267 (365)
.+-...|+.
T Consensus 141 ~~s~~fgeP 149 (277)
T PF13226_consen 141 NISAYFGEP 149 (277)
T ss_pred HHHhhcCCc
Confidence 888888886
No 396
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=74.26 E-value=51 Score=27.63 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+.+..|++.|..+.. -+.+.+..++|.++.. -....++--...+|..++.++-.+ ++..+-++|...|+.-.
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~----g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~ 158 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWN----GEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGK 158 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhcc----CcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccc
Confidence 337788888887765 4567777777777654 222222222233444667776544 45555556655554431
Q ss_pred Cc------------chhHH--hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 266 AI------------VPARE--KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 266 ~~------------~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+. .++.. -..|.+.|.++-.+|-+++ ++.+--|+...| .+|
T Consensus 159 ~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMy-klG 213 (248)
T KOG4014|consen 159 EKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMY-KLG 213 (248)
T ss_pred hhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHH-Hcc
Confidence 10 00110 2356688888888887774 566666666554 355
No 397
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=74.23 E-value=86 Score=30.21 Aligned_cols=130 Identities=16% Similarity=0.263 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Q 017806 146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 146 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
-++.-|+.+|.+.-.|+.|-.-+..++. +++-.+.|++...-.|-.+.+|...-.--.. ..+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s--------------~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA----~~d 91 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQES--------------MDAEREMYEQLSSPFPIMEHAWRLYMSGELA----RKD 91 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhh--------------HHHHHHHHHHhcCCCccccHHHHHHhcchhh----hhh
Confidence 3566678899999999999999999998 9999999999988888766666542222222 233
Q ss_pred HHHHHHHHHHH--------------------------------HHHHHHHHh---cCCCCHHHHHHHHHHHHHhcCcchh
Q 017806 226 TKEAEELWKQA--------------------------------TKNYEKAVQ---LNWNSPQALNNWGLALQELSAIVPA 270 (365)
Q Consensus 226 ~~~A~~~~~~A--------------------------------~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~ 270 (365)
|.....+|.++ .+.|+-++. .+|.+...|...+..+........
T Consensus 92 f~svE~lf~rCL~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k- 170 (660)
T COG5107 92 FRSVESLFGRCLKKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK- 170 (660)
T ss_pred HHHHHHHHHHHHhhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-
Confidence 33333222221 233444443 468888888888887765433311
Q ss_pred HHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 271 REKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
-+.+.+.+.-...|+++|..--++
T Consensus 171 wEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 171 WEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccc
Confidence 124555677788888888764333
No 398
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.66 E-value=53 Score=33.94 Aligned_cols=73 Identities=8% Similarity=-0.055 Sum_probs=44.9
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhh-----hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRS-----RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
..+...|..++ ..|++++|+.+|-+.|..-...+. .......-..+++...+..-.+.+=-..|-.||.++++
T Consensus 369 ~i~~kYgd~Ly-~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 369 EIHRKYGDYLY-GKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcc
Confidence 34556677775 899999999999998886544221 11233333444555555444444444566678888877
No 399
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=73.42 E-value=13 Score=35.18 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---------CPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
...|..++.-+|+ |..|++.++.. ++ .+.+...++..|.+|.. +++|.+|++
T Consensus 125 ligLlRvh~LLGD--------------Y~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylM----lrRY~DAir 185 (404)
T PF10255_consen 125 LIGLLRVHCLLGD--------------YYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLM----LRRYADAIR 185 (404)
T ss_pred HHHHHHHHHhccC--------------HHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHH----HHHHHHHHH
Confidence 4556677888999 99999987653 22 23356789999999999 999999998
Q ss_pred HHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAV 244 (365)
Q Consensus 232 ~~~~A~~~~~~al 244 (365)
.|...+-...+.-
T Consensus 186 ~f~~iL~yi~r~k 198 (404)
T PF10255_consen 186 TFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhh
Confidence 8887776666654
No 400
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.27 E-value=64 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
-+++..|..||......|++ +-|..+|+++=
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~----------~lAe~c~~k~~ 374 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNI----------ELAEECYQKAK 374 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBH----------HHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHHHcCCH----------HHHHHHHHhhc
Confidence 45789999999999999997 99999998853
No 401
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.84 E-value=5.1 Score=28.13 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHh
Q 017806 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 153 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~ 153 (365)
..|+.+..+|+..|..+. |++|+.+|..+++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~-----y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGR-----YSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHH
Confidence 467888888888766554 66666666666653
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.79 E-value=59 Score=30.72 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=37.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYD--ALYNW--ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
+..++|..|.+.+...+..-|.... .+..+ |..++..-+ +.+|.+.+++.+..
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd--------------~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFD--------------HKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHH
Confidence 4457899999999998885333333 34444 445566677 99999999998765
No 403
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.88 E-value=19 Score=34.60 Aligned_cols=99 Identities=11% Similarity=-0.060 Sum_probs=53.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------h----hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------G----RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------~----~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+...|..|.-....+.+. +.+|+|+.+...+..+-..-.. + ....|+++.|.....-.+...-++++..
T Consensus 316 lr~~~~~p~~i~l~~~i~-~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 316 LRNQQQDPVLIQLRSVIF-SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred HHhCCCCchhhHHHHHHH-HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 445666666666666677 5788888877776544332221 1 1222555555555444444333333333
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
.--+... ..++.++++...+++.+.++|..
T Consensus 395 ~iaa~sa--------------~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 395 TVAAGSA--------------DALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred eeecccH--------------HHHhHHHHHHHHHHHHhccCChh
Confidence 3222222 33333777777777777777653
No 404
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=71.86 E-value=20 Score=33.68 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH--hhhHHHHHHHHHHHHHHh
Q 017806 229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE--KQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 229 A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~ 290 (365)
|+.+..+|++++++|.. .++|..|.+++.++..+|+.-.... -..-|.+|...+.+|=..
T Consensus 330 a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 45567789999999875 5678999999999999999844443 346678888888888655
No 405
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.45 E-value=1.3e+02 Score=30.38 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHhC---C-CCHHHHHHHHHHHH-HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC--CCHHH--
Q 017806 138 RILTFAAKRYANAIERN---P-EDYDALYNWALVLQ-ESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHDA-- 208 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~---p-~~~~~~~~lg~~~~-~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~-- 208 (365)
+-...|+.|++-+++.. | ..+.+.+.+|.++. ...+ +++|..++++++.+.. +..+.
T Consensus 35 kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n--------------~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 35 KLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETEN--------------LDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhccccchHHHHH
Confidence 44777899998888522 2 23567889999988 5566 9999999999998874 43333
Q ss_pred --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHH--HHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 209 --FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWG--LALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 209 --~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-~~~~~~lg--~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
.+.++.++.+ .+... |....+++|..++. .+.. ....+.+- ..+...++ +..|++.
T Consensus 101 ~~~~ll~~i~~~----~~~~~-a~~~l~~~I~~~~~----~~~~~w~~~frll~~~l~~~~~d----------~~~Al~~ 161 (608)
T PF10345_consen 101 RCQFLLARIYFK----TNPKA-ALKNLDKAIEDSET----YGHSAWYYAFRLLKIQLALQHKD----------YNAALEN 161 (608)
T ss_pred HHHHHHHHHHHh----cCHHH-HHHHHHHHHHHHhc----cCchhHHHHHHHHHHHHHHhccc----------HHHHHHH
Confidence 3445555555 66666 88766666666654 1222 22222222 11222245 4899999
Q ss_pred HHHHHHhC--CCCHHH
Q 017806 284 FRAAIQLQ--FDFHRA 297 (365)
Q Consensus 284 ~~~al~~~--p~~~~~ 297 (365)
++...... ..++.+
T Consensus 162 L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 162 LQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHhhhcCCHHH
Confidence 99988875 455443
No 406
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.36 E-value=86 Score=28.16 Aligned_cols=77 Identities=13% Similarity=-0.040 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
..++.=++..|++..++..+|..+.+..=..++.. .....+.|...+.+|+.++|+...+...+-.+-
T Consensus 64 ~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s 143 (277)
T PF13226_consen 64 AVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINIS 143 (277)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 44566677899999999999988877543211111 445668899999999999999999999998888
Q ss_pred HHhhhhhhh
Q 017806 306 YGLAEDTLR 314 (365)
Q Consensus 306 ~~~g~~~~a 314 (365)
..+|+...-
T Consensus 144 ~~fgeP~WL 152 (277)
T PF13226_consen 144 AYFGEPDWL 152 (277)
T ss_pred hhcCCchHH
Confidence 888865443
No 407
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.29 E-value=35 Score=29.49 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=52.4
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
...+.+++|+...+.-++..|.+......+=.++.-.|+ |++|..-++-+-++.|++
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGd--------------w~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGD--------------WEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcch--------------HHHHHHHHHHHhhcCccc
Confidence 445779999999999999999999999999999999999 999999999999999985
No 408
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=68.29 E-value=38 Score=33.99 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=27.1
Q ss_pred CCCC-HHHHHHHHHHHHHhcCcchhHH---hhhHHHHHHHHHHHH
Q 017806 247 NWNS-PQALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAA 287 (365)
Q Consensus 247 ~p~~-~~~~~~lg~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a 287 (365)
.|.. .++|+-.|..+.+..++++|.. +.|+-.+|...+++.
T Consensus 799 hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 799 HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred CccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3443 5688899999999999844333 555556666655553
No 409
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.15 E-value=96 Score=27.86 Aligned_cols=144 Identities=14% Similarity=0.046 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 017806 141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 220 (365)
Q Consensus 141 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 220 (365)
..|++.-...+..+|....+|..+-.+.....- ........++.-..++..++.-+|.+..+|..+-.++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~------~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~-- 120 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQM------VSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLEL-- 120 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhh------hcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHh--
Confidence 346666677777888888888877777665211 001122236677888999999999999999998888765
Q ss_pred Hhc--CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 221 KMR--GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (365)
Q Consensus 221 ~~~--g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (365)
- .++..- +....+.+..|+.+.-+|..+-.++....+. ..-.++..-.++-...|..|+.|..+|
T Consensus 121 --~p~~~~~rE-------l~itkklld~DsrNyH~W~YR~~vl~~ie~~----~N~S~~k~e~eytt~~I~tdi~N~SaW 187 (328)
T COG5536 121 --FPKPSWGRE-------LFITKKLLDSDSRNYHVWSYRRWVLRTIEDL----FNFSDLKHELEYTTSLIETDIYNNSAW 187 (328)
T ss_pred --CCCcccchh-------HHHHHHHhcccccccceeeeEeeeeecchhh----ccchhHHHHHHhHHHHHhhCCCChHHH
Confidence 3 233222 2558889999999988888776666322111 000122444666667788899999999
Q ss_pred HHHHHHH
Q 017806 299 YNLGTVL 305 (365)
Q Consensus 299 ~~lg~~~ 305 (365)
.+.-...
T Consensus 188 ~~r~~~~ 194 (328)
T COG5536 188 HHRYIWI 194 (328)
T ss_pred HHHHHHH
Confidence 9884333
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.71 E-value=10 Score=35.92 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQA----TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A----~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
...|.+++.- +|+|..|++.++.- -..|. ..-+-+..+++..|-+|+.++++ .+|++.|
T Consensus 125 ligLlRvh~L----LGDY~~Alk~l~~idl~~~~l~~---~V~~~~is~~YyvGFaylMlrRY----------~DAir~f 187 (404)
T PF10255_consen 125 LIGLLRVHCL----LGDYYQALKVLENIDLNKKGLYT---KVPACHISTYYYVGFAYLMLRRY----------ADAIRTF 187 (404)
T ss_pred HHHHHHHHHh----ccCHHHHHHHhhccCcccchhhc---cCcchheehHHHHHHHHHHHHHH----------HHHHHHH
Confidence 3445666777 99999999543210 00111 11233678999999999999995 9999999
Q ss_pred HHHHHh
Q 017806 285 RAAIQL 290 (365)
Q Consensus 285 ~~al~~ 290 (365)
...+-.
T Consensus 188 ~~iL~y 193 (404)
T PF10255_consen 188 SQILLY 193 (404)
T ss_pred HHHHHH
Confidence 888743
No 411
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.86 E-value=1.4e+02 Score=29.33 Aligned_cols=79 Identities=10% Similarity=0.065 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+.--...+.+.+.+. .+-.++..++.+|.. .| .+.-. ...++.++.+-++...-..|+..|.+...
T Consensus 82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~e----n~-n~~l~-------~lWer~ve~dfnDvv~~ReLa~~yEkik~- 147 (711)
T COG1747 82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKE----NG-NEQLY-------SLWERLVEYDFNDVVIGRELADKYEKIKK- 147 (711)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHh----cC-chhhH-------HHHHHHHHhcchhHHHHHHHHHHHHHhch-
Confidence 566667777777765 456778889999987 63 33434 55788888888888888888888888444
Q ss_pred chhHHhhhHHHHHHHHHHHHHHh
Q 017806 268 VPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
+.+..+|.+++..
T Consensus 148 ----------sk~a~~f~Ka~yr 160 (711)
T COG1747 148 ----------SKAAEFFGKALYR 160 (711)
T ss_pred ----------hhHHHHHHHHHHH
Confidence 8889999998864
No 412
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=65.55 E-value=39 Score=22.86 Aligned_cols=32 Identities=38% Similarity=0.441 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~ 152 (365)
++.|+.+..+|+..+..+ ++++|+.+|.+++.
T Consensus 2 ~~~A~~~~~~Av~~D~~g-----~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAG-----NYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHH
Confidence 356777777777765544 34555555554443
No 413
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.54 E-value=1.3e+02 Score=31.00 Aligned_cols=186 Identities=13% Similarity=0.069 Sum_probs=103.0
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------h---hhhhhhHHHHHHHHHHHHHhC-CCCH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------G---RSRQRILTFAAKRYANAIERN-PEDY 158 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------~---~~~~~~~~~A~~~~~~al~~~-p~~~ 158 (365)
+++.-.++-..| +...+|+.-+++.+..-.+-.. + +.+-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSy-RDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSY-RDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhh-ccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 345555555556 4677788777776655444311 1 223389999999888888865 4445
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWKQAT 237 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g-~~~~A~~~~~~A~ 237 (365)
+.+...|.+|-.+= ....+...+..+.|+.+|+++.+..|.... =.|++.++.. .| .|+...++-.-++
T Consensus 279 Dm~Cl~GRIYKDmF-----~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~a----aG~~Fens~Elq~Igm 348 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMF-----IASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRA----AGEHFENSLELQQIGM 348 (1226)
T ss_pred ceeeeechhhhhhh-----hccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHH----hhhhccchHHHHHHHH
Confidence 66666677775431 112233445689999999999999997433 2345555554 44 3344433211111
Q ss_pred HHHHHHHhcCC------CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 238 KNYEKAVQLNW------NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 238 ~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+ +.-.+.... .+.++-+.++. ..-..+|.+|+..-++.++++|-.+.....++.++.
T Consensus 349 k-Ln~LlgrKG~leklq~YWdV~~y~~a-----------sVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~l 411 (1226)
T KOG4279|consen 349 K-LNSLLGRKGALEKLQEYWDVATYFEA-----------SVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENILL 411 (1226)
T ss_pred H-HHHHhhccchHHHHHHHHhHHHhhhh-----------hhhccCHHHHHHHHHHHhccCCceehHHHHHHHHHH
Confidence 1 111111000 01111111111 112234689999999999998876655555555544
No 414
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=65.09 E-value=92 Score=31.76 Aligned_cols=69 Identities=16% Similarity=0.031 Sum_probs=35.0
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
.++.++|..+ ..+..+++|.++|...-..... +++...+|++- +.....-|++...+-.+|.++...|.
T Consensus 797 ~A~r~ig~~f-a~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGM 867 (1189)
T KOG2041|consen 797 DAFRNIGETF-AEMMEWEEAAKYYSYCGDTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGM 867 (1189)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhch
Confidence 4555555555 2555566666666555433322 33333333322 22233346666666666666666666
No 415
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.97 E-value=12 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 254 ~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
.+.++.+|..+|+. +.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~----------e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDL----------EGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCCh----------HHHHHHHHHHHH
Confidence 36789999999996 999999999995
No 416
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.67 E-value=14 Score=22.88 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~ 200 (365)
.++|+.+|..+|+ ++.|...+++.+.
T Consensus 2 kLdLA~ayie~Gd--------------~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGD--------------LEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCC--------------hHHHHHHHHHHHH
Confidence 3689999999999 9999999999985
No 417
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.26 E-value=1.7e+02 Score=29.65 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC---PT------LHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
..+.++.+....++ +..+....+.+.... |. .+..++..|..+.. .|+.+.|.
T Consensus 363 ~~~y~~~~~~~~~~--------------~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~----~g~l~~A~ 424 (608)
T PF10345_consen 363 LLFYQIWCNFIRGD--------------WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQS----TGDLEAAL 424 (608)
T ss_pred HHHHHHHHHHHCcC--------------HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHH----cCCHHHHH
Confidence 46677888888888 988888888777653 22 47789999999999 99999999
Q ss_pred HHHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHhcCc
Q 017806 231 ELWKQATKNYEKAV-QLNWNS---PQALNNWGLALQELSAI 267 (365)
Q Consensus 231 ~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~~~~ 267 (365)
..|.+-+-...... ...+.. .-+..|+..++...+..
T Consensus 425 ~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 425 YQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred HHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 44332211111222 333322 23445677777766653
No 418
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=63.17 E-value=12 Score=26.18 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~ 152 (365)
...|+.++.+|+..+..+ ++++|+.+|.++++
T Consensus 3 l~~Ai~lv~~Av~~D~~g-----~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKDQRG-----DAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHH
Confidence 467888888887765544 46666666666655
No 419
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.98 E-value=1e+02 Score=26.86 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=23.6
Q ss_pred HHhcCCChhHhhhcHHHHHHHHHHhhccChh
Q 017806 102 SFSQGNTPHQLAEQNNAAMELINSVTGVDEE 132 (365)
Q Consensus 102 ~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~ 132 (365)
+..++.+. .+.|++++.+.++.+++..++.
T Consensus 4 li~~Akla-eq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLA-EQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHH-HHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHccCCC
Confidence 34556677 6899999999999999988764
No 420
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.43 E-value=42 Score=26.74 Aligned_cols=52 Identities=19% Similarity=0.028 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
..+.....+..... .|++.-|. +....++..+|++..+...++.+|..+|..
T Consensus 69 G~d~vl~~A~~~~~----~gd~~wA~-------~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALA----AGDYQWAA-------ELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHH----CT-HHHHH-------HHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 34555556666666 89999998 778889999999999999999999998863
No 421
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.56 E-value=39 Score=26.89 Aligned_cols=53 Identities=11% Similarity=-0.057 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
-.+.....+......|++ .-|..+...++..+|+|..+...++.++..+|...
T Consensus 69 G~d~vl~~A~~~~~~gd~----------~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDY----------QWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 345556666666777774 99999999999999999999999999999999654
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.26 E-value=54 Score=28.79 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC--CC----HHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF--DF----HRA 297 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~ 297 (365)
......++++++|+..|.+.-. .---......+|..|...|++ ++|+++|+.+....- .. ..+
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~----------~~A~~~l~~~~~~yr~egW~~l~~~~ 220 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDY----------DKALKLLEPAASSYRREGWWSLLTEV 220 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3444567777778777775432 111245666899999999996 999999999965532 22 234
Q ss_pred HHHHHHHHHHhhhhh
Q 017806 298 IYNLGTVLYGLAEDT 312 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~ 312 (365)
...+-.|...+|+..
T Consensus 221 l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 221 LWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHhCCHH
Confidence 555566666666443
No 423
>PF12854 PPR_1: PPR repeat
Probab=60.92 E-value=18 Score=20.67 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
+..+|+.+-..|.+.|+. ++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~----------~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRV----------DEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCH----------HHHHHHHHh
Confidence 467889999999999997 999999875
No 424
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.75 E-value=19 Score=31.30 Aligned_cols=37 Identities=14% Similarity=-0.013 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 205 LHDAFYNWAIAISDRAKM-------RGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~-------~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
.+..+...|..+.. .. .++...|+ .++++|++++|+.
T Consensus 168 rAKl~K~~G~~llr--~~~g~~~~d~~~l~~Al-------~~L~rA~~l~~k~ 211 (230)
T PHA02537 168 RAKLYKAAGYLLLR--NEKGEPIGDAETLQLAL-------ALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHhh--cccCCCccCcccHHHHH-------HHHHHHHHhCCCC
Confidence 35667778887732 00 34555566 8899999999873
No 425
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.85 E-value=29 Score=30.16 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=17.8
Q ss_pred hhhcHHHHHHHHHHhhccC
Q 017806 112 LAEQNNAAMELINSVTGVD 130 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~ 130 (365)
-.|+++.|+++..-+|..+
T Consensus 95 D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eccCHHHHHHHHHHHHHcC
Confidence 7899999999999999987
No 426
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=56.59 E-value=1.2e+02 Score=25.51 Aligned_cols=173 Identities=15% Similarity=0.060 Sum_probs=102.3
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh--hhhh------------hhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE--EGRS------------RQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~--~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
....|++-+.+|..+--...+|++|..+|..--..+. ...+ ..+++..|++.|..+-. -+++.+
T Consensus 30 ~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 3455677777777662245678888888886544432 1111 12688999999998876 577888
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc-----------CCH-HH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-----------GRT-KE 228 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-----------g~~-~~ 228 (365)
-.++|.+++.-....++. =+..+|.+++.++..+. +..+.++|...+.. - |.. +.
T Consensus 108 C~~~gLl~~~g~~~r~~d-------pd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~----g~~k~~t~ap~~g~p~~~ 174 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKAD-------PDSEKAERYMTRACDLE--DGEACFLLSTMYMG----GKEKFKTNAPGEGKPLDR 174 (248)
T ss_pred HhhhhhhhccCcCCccCC-------CCcHHHHHHHHHhccCC--CchHHHHHHHHHhc----cchhhcccCCCCCCCcch
Confidence 999999988643311111 11678999999997665 55666677666644 2 110 00
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 229 -----AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 229 -----A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
-....++|.+.--+|-++ +++.+-.|+...|..-.-.. .+-++|..+-.+|.++
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~------Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVP------KDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCC------ccHHHHHHHHHHHHHH
Confidence 011233444555555444 46777777777665422221 1125666666666554
No 427
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=56.41 E-value=33 Score=18.96 Aligned_cols=29 Identities=14% Similarity=-0.060 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 280 AISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
.+.+..+++..+|.+..+|..+-.++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 35677889999999999999988887654
No 428
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.02 E-value=66 Score=22.30 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhccChhhhhhh--hhHHHHHHHHHHHHHhCCC
Q 017806 116 NNAAMELINSVTGVDEEGRSRQ--RILTFAAKRYANAIERNPE 156 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~--~~~~~A~~~~~~al~~~p~ 156 (365)
.+.|+.++.+|+..+..+.+.. ..|..|++.|..+++..|+
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~ 45 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3577788888877655443221 2344444555555555553
No 429
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=55.62 E-value=83 Score=27.26 Aligned_cols=67 Identities=10% Similarity=-0.098 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC---HHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIY 299 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 299 (365)
.++..+++ ...+.-++.+|.+...-..+-.+|.-.|++ ++|..-++-+-++.|++ +..|.
T Consensus 14 ~~sL~dai-------~~a~~qVkakPtda~~RhflfqLlcvaGdw----------~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 14 DNSLQDAI-------GLARDQVKAKPTDAGGRHFLFQLLCVAGDW----------EKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hccHHHHH-------HHHHHHHhcCCccccchhHHHHHHhhcchH----------HHHHHHHHHHhhcCcccchHHHHHH
Confidence 67788888 778888999999999999999999999996 99999999999999987 34555
Q ss_pred HHHHHHH
Q 017806 300 NLGTVLY 306 (365)
Q Consensus 300 ~lg~~~~ 306 (365)
++-.|..
T Consensus 77 ~lir~ea 83 (273)
T COG4455 77 HLIRCEA 83 (273)
T ss_pred HHHHHHH
Confidence 5555544
No 430
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.49 E-value=56 Score=27.33 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
++..++.++..| ++.++.+++.++...|+. ++|....+++..+.|.
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~----------~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDP----------EEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCc
Confidence 366777787788 689999999999999997 9999999999999994
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.60 E-value=67 Score=26.86 Aligned_cols=51 Identities=29% Similarity=0.344 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT 204 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~ 204 (365)
.....++..++.++..| ++..+.+++.++...|+ .++|.....++..+.|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~--------------~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGD--------------PEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCc
Confidence 35667778888888888 58889999999999999 99999999999999993
No 432
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=53.54 E-value=1.1e+02 Score=23.92 Aligned_cols=71 Identities=15% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHhcCC
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~g~ 225 (365)
+..+|...+..++ +-.+|-+|++|+.+..+ .....-||+..+.. .|+
T Consensus 4 htllAd~a~~~~~--------------~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~----~gd 65 (140)
T PF10952_consen 4 HTLLADQAFKEAD--------------PLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRS----QGD 65 (140)
T ss_pred HHHHHHHHhhccc--------------HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHH----cCC
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
.+-.+++++-|-+.....+-.-|+
T Consensus 66 ~~yELkYLqlASE~VltLiPQCp~ 89 (140)
T PF10952_consen 66 SDYELKYLQLASEKVLTLIPQCPN 89 (140)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCC
No 433
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.53 E-value=72 Score=22.02 Aligned_cols=33 Identities=36% Similarity=0.332 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHH
Q 017806 115 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~ 152 (365)
.++.|+.+..+|+..+..+ ++++|+.+|.++++
T Consensus 4 ~~~~A~~li~~Av~~d~~g-----~~~eAl~~Y~~a~e 36 (77)
T smart00745 4 YLSKAKELISKALKADEAG-----DYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Confidence 3567777777777665543 34444444444443
No 434
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.47 E-value=75 Score=22.18 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~ 152 (365)
..+|+.++.+|+..+.. |+|++|..+|..+++
T Consensus 3 l~~A~~l~~~Ave~d~~-----~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 3 LEQAAELIRLALEKEEE-----GDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHH
Confidence 35778888888776654 446666666666655
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.19 E-value=85 Score=27.57 Aligned_cols=75 Identities=12% Similarity=-0.014 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 261 (365)
-...|+.+.+|++.... -..+...+|..|.. .|++++|+++|+.+...|++- .-..-...+...+-.|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~----~g~~~~A~~~l~~~~~~yr~e-gW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR----LGDYDKALKLLEPAASSYRRE-GWWSLLTEVLWRLLECA 228 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHH
Confidence 33445555555544221 24456788999999 999999998777776665531 00011245677788888
Q ss_pred HHhcCc
Q 017806 262 QELSAI 267 (365)
Q Consensus 262 ~~~~~~ 267 (365)
...|+.
T Consensus 229 ~~~~~~ 234 (247)
T PF11817_consen 229 KRLGDV 234 (247)
T ss_pred HHhCCH
Confidence 888886
No 436
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.94 E-value=1.8e+02 Score=25.81 Aligned_cols=154 Identities=14% Similarity=0.032 Sum_probs=82.9
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCccccCCCCchhhh
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSLDSTSPSKDA 186 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~ 186 (365)
..+++++|++++..+... ....|++..|.+...-.++. .+.+.....++..+....+. .......
T Consensus 2 ~~kky~eAidLL~~Ga~~----ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~------~~p~r~~ 71 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI----LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP------EEPERKK 71 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH----HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T------T-TTHHH
T ss_pred ccccHHHHHHHHHHHHHH----HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------CcchHHH
Confidence 456788888887766432 23334455555444333332 24445555677777666543 1111222
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-----H----HHHHHHHHhcCCCCHHHHHHH
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-----A----TKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~-----A----~~~~~~al~~~p~~~~~~~~l 257 (365)
-...|+.+- +.-...-.++..+..+|..+.+ .|++.+|...|=. + .-.+....+..|...+.+..+
T Consensus 72 fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 72 FIKAAIKWS-KFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR 146 (260)
T ss_dssp HHHHHHHHH-HTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH
T ss_pred HHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 344555555 2212222478999999999999 9999999976421 1 122334445677778877777
Q ss_pred HH-HHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 258 GL-ALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 258 g~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
+. -|...++. ..|...+..-++.
T Consensus 147 aVL~yL~l~n~----------~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 AVLQYLCLGNL----------RDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTTBH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCH----------HHHHHHHHHHHHH
Confidence 65 45556775 7777666555544
No 437
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=50.48 E-value=33 Score=19.99 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
.+.++++.++.+.... .+..+++..+++.+...
T Consensus 2 qt~FnyAw~Lv~S~~~-------~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNR-------EDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHHHSSSH-------HHHHHHHHHHHHHCCCS
T ss_pred cchhHHHHHHhcCCCH-------HHHHHHHHHHHHHHhcc
Confidence 5678899999988775 55678888888766544
No 438
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=50.35 E-value=58 Score=30.48 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
..+-+|+..++.++..+|.+......+..+|..+|-
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~ 232 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGA 232 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Confidence 344555555666666666666666666666666665
No 439
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.29 E-value=1.6e+02 Score=25.06 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhhhhhh
Q 017806 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 249 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~a 314 (365)
++++..+.+|..|.+... ++++..+-+++++.+. |++++..|+.++..+|+.+.+
T Consensus 139 ~t~elq~aLAtyY~krD~-----------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYTKRDP-----------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHccCH-----------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 468888888888886655 8899999999988433 478888899998888876543
No 440
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=48.31 E-value=1.2e+02 Score=23.46 Aligned_cols=81 Identities=17% Similarity=0.067 Sum_probs=57.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----------------CCC--CHHHH
Q 017806 148 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----------------CPT--LHDAF 209 (365)
Q Consensus 148 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----------------~p~--~~~~~ 209 (365)
..+...+|..+.+|-.|+......|+.+.+ |.-|..-|-+.|.. .|+ ...+.
T Consensus 26 ~~vaa~~P~ss~aWA~LAe~al~~g~~v~A----------YAyARTGYHRGLD~LRr~GWkG~GPVPw~HePNrGfLRal 95 (129)
T PF11349_consen 26 AEVAAAHPASSLAWAALAEEALAAGRPVTA----------YAYARTGYHRGLDQLRRNGWKGHGPVPWSHEPNRGFLRAL 95 (129)
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCCCchhh----------hhhhhccccccHHHHHHCCCCCCCCCCCccCCccHHHHHH
Confidence 355667899999999999999999986666 66666667666653 233 35667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
..|+.+-.. .|..+|.. .+.+-....+|.
T Consensus 96 ~aLa~AA~~----IGE~dE~~-------Rc~~~L~Dsdp~ 124 (129)
T PF11349_consen 96 AALARAAQA----IGETDEYD-------RCRQFLRDSDPE 124 (129)
T ss_pred HHHHHHHHH----hCChhHHH-------HHHHHHHhCCHH
Confidence 777777777 99998888 444444444553
No 441
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=47.84 E-value=2.4e+02 Score=26.28 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=79.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC------hh---------h--hhhhhhHHHHHHHHHHHHHhC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD------EE---------G--RSRQRILTFAAKRYANAIERN 154 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~------~~---------~--~~~~~~~~~A~~~~~~al~~~ 154 (365)
++..+.-++.+..-..+|+ ...+..+|...+..|-... |. | .-...+|..|..+|-++++-+
T Consensus 161 lDDK~lLvev~llESK~y~-~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 161 LDDKILLVEVHLLESKAYH-ALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred cccccceeeehhhhhHHHH-HHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence 3444444555555556664 6666667766666554433 22 1 122378999999999998853
Q ss_pred C---CCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 155 P---EDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEA--CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 155 p---~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A--~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
- ++. .++..+-.|-.+++. .++- +-.-+.+++....+.++....+.++.+
T Consensus 240 ~s~~~~v~A~~sLKYMlLcKIMln~--------------~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~n-------- 297 (411)
T KOG1463|consen 240 DSLDDDVKALTSLKYMLLCKIMLNL--------------PDDVAALLSAKLALKYAGRDIDAMKAVAEAFGN-------- 297 (411)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHhhHHHHhccCcchHHHHHHHHHhcC--------
Confidence 2 122 344555566666666 5543 333345566666677777777777654
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 017806 227 KEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
..+..|+.|+..|..-+..||-
T Consensus 298 -RSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 298 -RSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred -CcHHHHHHHHHHhHHHHhcChH
Confidence 2344555666888887776663
No 442
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.70 E-value=80 Score=32.35 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
+++..++.-..-++...|....++..++.+|...++ ++-|++...-.....|.+.
T Consensus 107 ~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k--------------~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 107 GEYPKAIPECELALESQPRISKALLKRARKYEALNK--------------LDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred cchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHH--------------HHHHHHHHHHHhcCCCCcc
Confidence 555555555555555555555555555555555555 5555555444444455543
No 443
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.69 E-value=1.6e+02 Score=27.24 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 188 LEEACKKYDEATRL--CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 188 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
...++...+-.... -.....++.-.|.++.+ +|+..+|. ..|++++.+.++..+.-+.+
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r----Lgr~~eAr-------~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLAR----LGRVEEAR-------AAYDRAIALARNAAERAFLR 405 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHH----hCChHHHH-------HHHHHHHHhcCChHHHHHHH
Confidence 45555555544433 22345667788889988 99999999 77888888888776654443
No 444
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=46.58 E-value=84 Score=32.23 Aligned_cols=102 Identities=21% Similarity=0.118 Sum_probs=77.2
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
=|+.+++.++ +..+.--|..++.+-|. ..-.+.+.+.++.. ...|+|..++ ..
T Consensus 59 E~n~~~~K~d--------------~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~--~~l~~~~~~~-------~E 115 (748)
T KOG4151|consen 59 EGNKLFQKRD--------------YEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQ--LGLGEYPKAI-------PE 115 (748)
T ss_pred hhhHHhhhhh--------------hhccchhhhhhheeccccchhhhhHHHHHHHHHhh--cCccchhhhc-------Cc
Confidence 3455666677 88888888888888774 34456666666655 2257888888 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (365)
..-++...|....+++..+.+|...+.+ +-|++...-.....|++..+.
T Consensus 116 ~~la~~~~p~i~~~Ll~r~~~y~al~k~----------d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 116 CELALESQPRISKALLKRARKYEALNKL----------DLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred hhhhhhccchHHHHHhhhhhHHHHHHHH----------HHHHHHHHHHhcCCCCcchHH
Confidence 8888999999999999999999999986 888888777777788884443
No 445
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=46.50 E-value=67 Score=30.28 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhc
Q 017806 273 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 343 (365)
...-...|+.++++|.. -+.|..|.+++.++..+|+...- ........|..|...+.+|+..
T Consensus 330 a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~-------eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDN-------ESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SS-------HHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhccccc-------chHHHHHHHHHHHHHHHHHhhc
Confidence 45667888888888876 56788999999999999965411 1122346789999998888775
No 446
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.33 E-value=1.9e+02 Score=29.94 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=45.3
Q ss_pred hhhcHHHHHHHHHHhhccChh--------------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 112 LAEQNNAAMELINSVTGVDEE--------------------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
.-|+-++|+...-..++..+. ++...+..+.|+.+|+++.+..|.... =.|++.++...
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aa 333 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAA 333 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHh
Confidence 458888999888888876643 233347789999999999999996433 35777777777
Q ss_pred cC
Q 017806 172 AD 173 (365)
Q Consensus 172 ~~ 173 (365)
|+
T Consensus 334 G~ 335 (1226)
T KOG4279|consen 334 GE 335 (1226)
T ss_pred hh
Confidence 75
No 447
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=46.14 E-value=2.7e+02 Score=26.57 Aligned_cols=92 Identities=17% Similarity=0.032 Sum_probs=49.5
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhcCccccCCCCchhhhHHHHHHHHHHHHHH----hCC
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ-------ESADNVSLDSTSPSKDALLEEACKKYDEATR----LCP 203 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-------~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~----~~p 203 (365)
+..++|+.|...|+.+.+-.-. -.+|..+|-++. ..+....+..........++.|...|.++-. ...
T Consensus 219 Fml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~~ 297 (414)
T PF12739_consen 219 FMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRCSLPY 297 (414)
T ss_pred HHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcccccccc
Confidence 4458888888888877764432 234444444443 3332111111122333557888888888421 112
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 204 TLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 204 ~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.-..+....+.++.. .|.+.++..
T Consensus 298 ~a~R~~ll~~ell~~----~~~~~~a~~ 321 (414)
T PF12739_consen 298 YALRCALLLAELLKS----RGGYWEAAD 321 (414)
T ss_pred chHHHHHHHHHHHHh----cCccHHHHH
Confidence 233455555555656 777777664
No 448
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=45.71 E-value=86 Score=21.57 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHH
Q 017806 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~ 152 (365)
+.|+.+..+|+..+.. |++++|+.+|..+++
T Consensus 4 ~~a~~l~~~Av~~D~~-----g~~~~Al~~Y~~a~e 34 (75)
T cd02656 4 QQAKELIKQAVKEDED-----GNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH
Confidence 4566666666665544 334444444444443
No 449
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.01 E-value=99 Score=37.47 Aligned_cols=120 Identities=18% Similarity=0.124 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
++.+...|..+.++|+ .++|-..|..|++++-..+.+|...|.....+..+.+.- +..-..|+
T Consensus 2812 aeff~lkG~f~~kL~~--------------~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~n---i~~a~~av 2874 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGK--------------FEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVN---ISFACNAV 2874 (3550)
T ss_pred HHHHHhhhHHHHHhcC--------------cchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcc---cHHHHHHH
Confidence 5567778888888888 999999999999999999999999999988855444432 22233455
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
.+|-+|.... ++..+.-.++.+++-+.- +.|.....+++...-....+|+.+-++=.
T Consensus 2875 sCyLqA~~~~-~~skaRk~iakvLwLls~-----------dda~~~l~~~~~k~l~~ip~~~wl~~IPQ 2931 (3550)
T KOG0889|consen 2875 SCYLQAARLY-NSSKARKLIAKVLWLLSF-----------DDSLGTLGDVFDKFLGEIPVWNWLYFIPQ 2931 (3550)
T ss_pred HHHHHHhccc-cchhhHHHHHHHHHHHHh-----------ccccchHHHHHHHhhccCCchhhhhhhHH
Confidence 7777776654 233444455555555443 44444454555444334444444444433
No 450
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=44.83 E-value=1.1e+02 Score=24.68 Aligned_cols=37 Identities=22% Similarity=0.092 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
..+..... .|+.++|+..+++|...+..+...+|...
T Consensus 7 ~~Ar~aL~----~g~~~~A~~~L~~A~~~l~~~~~~~p~~~ 43 (155)
T PF10938_consen 7 QKARLALF----QGDTDEAKKLLEDAQGKLDAARADDPKLA 43 (155)
T ss_dssp HHHHHHHC----TT-HHHHHHHHHHHHHHHTS-HHHHHCCB
T ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHhcChHhH
Confidence 34555555 89999999998888888887776655544
No 451
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=44.74 E-value=60 Score=18.52 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHHH--HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 158 YDALYNWA--LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 158 ~~~~~~lg--~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
+.+.+.+| .++.. |. .....++++|+.+|+++.+.
T Consensus 1 a~A~~~lg~~~~~~~-g~--------~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYN-GK--------GGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHH-TS--------TSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhh-cc--------CCccccccchHHHHHHHHHc
Confidence 45778888 44444 22 00112499999999999765
No 452
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=44.58 E-value=54 Score=25.67 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE 170 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 170 (365)
+..-+.+.|...|+.+++.+|++..++..+-..+-.
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 333456889999999999999999888777665554
No 453
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=44.05 E-value=40 Score=17.90 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
.|..+-..|.+.|+ +++|...|++..+.
T Consensus 2 ~y~~li~~~~~~~~--------------~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQ--------------FEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccch--------------HHHHHHHHHHHhHC
Confidence 35667778888888 99999999987653
No 454
>PF13041 PPR_2: PPR repeat family
Probab=42.44 E-value=81 Score=19.42 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 017806 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--FDFHRAIYNL 301 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 301 (365)
+...|+-+-..+.+.|++ ++|.+.|++..+.. |+ ...+..+
T Consensus 2 ~~~~yn~li~~~~~~~~~----------~~a~~l~~~M~~~g~~P~-~~Ty~~l 44 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKF----------EEALKLFKEMKKRGIKPD-SYTYNIL 44 (50)
T ss_pred chHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHcCCCCC-HHHHHHH
Confidence 356788888899999996 99999999998764 43 4444444
No 455
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.27 E-value=2.7e+02 Score=28.09 Aligned_cols=90 Identities=12% Similarity=-0.062 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
++.|.....++ ++..-|..||.+... .|++..|.++|.+|..+-.-.| .-..++++.+..+|..-.+.|.
T Consensus 653 l~iA~~la~e~-----~s~~Kw~~Lg~~al~----~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 653 LDIAFDLAVEA-----NSEVKWRQLGDAALS----AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHHHHHHHhh-----cchHHHHHHHHHHhh----cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 66666554443 677789999999999 9999999977666533221111 1123455555555555555554
Q ss_pred cchhHH---hhhHHHHHHHHHHH
Q 017806 267 IVPARE---KQTIVRTAISKFRA 286 (365)
Q Consensus 267 ~~~~~~---~~~~~~~A~~~~~~ 286 (365)
..-|-. ..|+++++++.+.+
T Consensus 724 ~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cchHHHHHHHcCCHHHHHHHHHh
Confidence 422211 33445666555544
No 456
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=41.99 E-value=90 Score=30.87 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 278 RTAISKFRAAIQL-----QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 278 ~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
..++.+|.+||.. +-.+...|..+|-.+++.++..+|...+ ..+...+.+-.=-..+-..|+.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~W------------a~aa~Vi~~YnY~reDeEiYKE 363 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSW------------AEAADVIRKYNYSREDEEIYKE 363 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHH------------HHHHHHHTTSB--GGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHH------------HHHHHHHHHcccCccHHHHHHH
Confidence 6778888888865 3445667888999999999887766543 3343332222222334455555
Q ss_pred HHHhhhhhhc
Q 017806 353 ALRLVRSMVS 362 (365)
Q Consensus 353 al~~~~~~~~ 362 (365)
-+.+...+.|
T Consensus 364 fleIAneLiP 373 (618)
T PF05053_consen 364 FLEIANELIP 373 (618)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 457
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.28 E-value=4.7e+02 Score=27.85 Aligned_cols=123 Identities=9% Similarity=-0.079 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh----cCCHHHHHHH--HHHHHHHHHHHHhcCCC-------CH
Q 017806 186 ALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKM----RGRTKEAEEL--WKQATKNYEKAVQLNWN-------SP 251 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~----~g~~~~A~~~--~~~A~~~~~~al~~~p~-------~~ 251 (365)
...+-++.+++.++..+.. ....+..+...|..+..+ .++-+++.+. .++.....+..=..+|+ ..
T Consensus 605 ~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~ 684 (877)
T KOG2063|consen 605 KEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGD 684 (877)
T ss_pred hCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccch
Confidence 4477789999999887665 556677777777663331 1222344433 22222222211111221 25
Q ss_pred HHHHHHHHHHHHhcCcchhHH----hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 252 QALNNWGLALQELSAIVPARE----KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
..|...+.++.++|+.++|.. ..+|++.|..++....+-++.+...+..+-.+|..-
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 678889999999999866665 667777777777777664444666666666666544
No 458
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=40.94 E-value=58 Score=18.09 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
.+.+.+|.+|..-.. ...+..+|+.+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g----------~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLG----------VKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCC----------CCcCHHHHHHHHHHHHHc
Confidence 467788888864210 011289999999998764
No 459
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.37 E-value=3.5e+02 Score=25.21 Aligned_cols=156 Identities=16% Similarity=0.036 Sum_probs=96.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcccc---CCCC---------chhhhHHHHHHHHHHHHHHhC-
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL---DSTS---------PSKDALLEEACKKYDEATRLC- 202 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a---~~~~---------~~~~~~~~~A~~~~~~al~~~- 202 (365)
+-+--++|+..-.-.+.+.|..++++-.++.+.++..+...= .|.. .-..+..+++...+.+++...
T Consensus 208 ra~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~ 287 (415)
T COG4941 208 RADLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR 287 (415)
T ss_pred cchHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 335678999999999999999999999999988876552111 1110 002366788888899888764
Q ss_pred CCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHH--------------------------HHHHHHHHHhc--CCCCHH
Q 017806 203 PTLHDAFYNWAIAISDRAKMR--GRTKEAEELWKQ--------------------------ATKNYEKAVQL--NWNSPQ 252 (365)
Q Consensus 203 p~~~~~~~~lg~~~~~~~~~~--g~~~~A~~~~~~--------------------------A~~~~~~al~~--~p~~~~ 252 (365)
|.-....-.++.++.. +... -+|..-..+|+- ++...+..... -..+.-
T Consensus 288 pGPYqlqAAIaa~HA~-a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~ 366 (415)
T COG4941 288 PGPYQLQAAIAALHAR-ARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHL 366 (415)
T ss_pred CChHHHHHHHHHHHHh-hcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccc
Confidence 3333333334444433 1111 133333333321 12222222221 123556
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
++...|..+.++|+. ++|...|++++.+.++..+..+.+.
T Consensus 367 ~h~~RadlL~rLgr~----------~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 367 YHAARADLLARLGRV----------EEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred cHHHHHHHHHHhCCh----------HHHHHHHHHHHHhcCChHHHHHHHH
Confidence 777788888888886 9999999999999998777654443
No 460
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=1.8e+02 Score=27.62 Aligned_cols=68 Identities=7% Similarity=-0.112 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--P--TLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--p--~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
...+.|-..|...+. |+.|.....+..--. . .-+..++.+|.+..- +++|..|.
T Consensus 210 vLiN~LLr~yL~n~l--------------ydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai----qldYssA~---- 267 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKL--------------YDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI----QLDYSSAL---- 267 (493)
T ss_pred HHHHHHHHHHhhhHH--------------HHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh----hcchhHHH----
Confidence 344555666666666 999888877764211 1 234567778888888 88888888
Q ss_pred HHHHHHHHHHhcCCCCH
Q 017806 235 QATKNYEKAVQLNWNSP 251 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~ 251 (365)
++|-+|+...|++.
T Consensus 268 ---~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 268 ---EYFLQALRKAPQHA 281 (493)
T ss_pred ---HHHHHHHHhCcchh
Confidence 77888888888643
No 461
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=35.82 E-value=2.3e+02 Score=22.61 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
+|+-+.-. +.+....+-+..++..+.-+|.+|.+.|+. .+|-..+.+|-+.
T Consensus 99 ~~kkDqLd-------ki~~~l~kn~~~~p~~L~kia~Ay~klg~~----------r~~~ell~~ACek 149 (161)
T PF09205_consen 99 QGKKDQLD-------KIYNELKKNEEINPEFLVKIANAYKKLGNT----------REANELLKEACEK 149 (161)
T ss_dssp TT-HHHHH-------HHHHHH-----S-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHT
T ss_pred hccHHHHH-------HHHHHHhhccCCCHHHHHHHHHHHHHhcch----------hhHHHHHHHHHHh
Confidence 55555544 556665554556799999999999999997 8898888888654
No 462
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=35.74 E-value=4e+02 Score=25.46 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHHHHhcCCH------
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN-------WAIAISDRAKMRGRT------ 226 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------lg~~~~~~~~~~g~~------ 226 (365)
....||.+++.+++ |+.|...|+-+..-.-++ .+|.. .|.++.. .+..
T Consensus 210 q~R~LAD~aFml~D--------------y~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~----~~~~~~~k~~ 270 (414)
T PF12739_consen 210 QMRRLADLAFMLRD--------------YELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLM----QGQSISAKIR 270 (414)
T ss_pred HHHHHHHHHHHHcc--------------HHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHh----cCCCCccccc
Confidence 35678999999999 999999999987743322 33333 3333333 4432
Q ss_pred -HHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--C--CC---C
Q 017806 227 -KEAEELWKQATKNYEKAV----QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--Q--FD---F 294 (365)
Q Consensus 227 -~~A~~~~~~A~~~~~~al----~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~--p~---~ 294 (365)
++...+++.|+..|.++- .....-..+....+.++...+.+ .+|...+-+.... . -. .
T Consensus 271 ~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~----------~~a~~~~~~~~~~~l~~~l~~~~~ 340 (414)
T PF12739_consen 271 KDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGY----------WEAADQLIRWTSEILESDLRPFGS 340 (414)
T ss_pred cccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCcc----------HHHHHHHHHHHHHHHhhhhhhHhh
Confidence 366667888888888842 11122345666677777777775 6666655555544 2 22 3
Q ss_pred HHHHHHHHHHH
Q 017806 295 HRAIYNLGTVL 305 (365)
Q Consensus 295 ~~~~~~lg~~~ 305 (365)
+-.+..++.|+
T Consensus 341 alllE~~a~~~ 351 (414)
T PF12739_consen 341 ALLLEQAAYCY 351 (414)
T ss_pred HHHHHHHHHhh
Confidence 44555566666
No 463
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.22 E-value=1.2e+02 Score=28.18 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
-++....+...+..-|+ .+.+|..++.++.. .|.++..+.+|++|
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~----~~~~e~vi~iyEeA 166 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPR----TGPIEDVIAIYEEA 166 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHH
Confidence 45666677777777675 67899999999999 99999999554443
No 464
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=32.53 E-value=5.1e+02 Score=25.92 Aligned_cols=17 Identities=6% Similarity=-0.168 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHhcC
Q 017806 250 SPQALNNWGLALQELSA 266 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~ 266 (365)
+..-|..+|-.|++.++
T Consensus 317 HvYPYty~gg~~yR~~~ 333 (618)
T PF05053_consen 317 HVYPYTYLGGYYYRHKR 333 (618)
T ss_dssp -SHHHHHHHHHHHHTT-
T ss_pred ccccceehhhHHHHHHH
Confidence 33444445555555555
No 465
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=31.39 E-value=4.5e+02 Score=24.77 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-hcCCCC-----HHHHHHHHHHHHHhcCcchhH-----------
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNS-----PQALNNWGLALQELSAIVPAR----------- 271 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al-~~~p~~-----~~~~~~lg~~~~~~~~~~~~~----------- 271 (365)
....+.+|...+...++.+.-+.++.+=+..++..+ .++|++ ...|+.+|.+|..+=+..-..
T Consensus 174 ~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~ 253 (371)
T PF12309_consen 174 LQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPP 253 (371)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Confidence 333344443333335666666666666555555555 234442 356777777776654432110
Q ss_pred ------HhhhHHHHHHHHHHHHHHh--CCC--------C-------HHHHHHHHHHHHHh
Q 017806 272 ------EKQTIVRTAISKFRAAIQL--QFD--------F-------HRAIYNLGTVLYGL 308 (365)
Q Consensus 272 ------~~~~~~~~A~~~~~~al~~--~p~--------~-------~~~~~~lg~~~~~~ 308 (365)
.-.+....|+.+|+.-+.. .|+ + ..+++.+|.+|.+.
T Consensus 254 ~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~ 313 (371)
T PF12309_consen 254 DDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKL 313 (371)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccc
Confidence 0224556788888887765 332 1 23566666666655
No 466
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=31.30 E-value=2.4e+02 Score=23.07 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
..+-+.|++++..+.....+.+.+...+.++|..+...+.
T Consensus 83 ~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~ 122 (170)
T PF09548_consen 83 ESFAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSDR 122 (170)
T ss_pred CCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCH
Confidence 3455556777777777777788888999999988765544
No 467
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.23 E-value=92 Score=16.73 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
|..+-..|.+.|+ +++|...|.+..+.
T Consensus 3 ~n~li~~~~~~~~--------------~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGR--------------VEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCC--------------HHHHHHHHHHHHHc
Confidence 5666677888888 99999999987653
No 468
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.93 E-value=3.4e+02 Score=24.71 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.++|.|+|..|.+.++. +.+.+++.+.++.
T Consensus 115 ~ea~~n~aeyY~qi~D~----------~ng~~~~~~~~~~ 144 (412)
T COG5187 115 SEADRNIAEYYCQIMDI----------QNGFEWMRRLMRD 144 (412)
T ss_pred HHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHH
Confidence 68999999999999997 7777777776654
No 469
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=30.27 E-value=1.1e+02 Score=17.45 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
+++|...|++.+...|+ +..|...+.
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 34555889999999875 777776664
No 470
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.09 E-value=4.8e+02 Score=24.69 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCC-----CHHHHHHH--HHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPE-----DYDALYNW--ALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l--g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
+..++|..|...|..++...+. ....+..+ |..++..-+ +++|.+++++
T Consensus 141 ~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd--------------~~~A~~~L~~ 196 (380)
T TIGR02710 141 INAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFE--------------HEEALDYLND 196 (380)
T ss_pred HHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccC--------------HHHHHHHHhh
Confidence 4567899999999999987542 23344444 444555666 9999999986
No 471
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=29.07 E-value=3e+02 Score=21.95 Aligned_cols=45 Identities=29% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
-++-...+.....-+..++..+..+|.+|.+ .|+..++-+++.+|
T Consensus 102 kDqLdki~~~l~kn~~~~p~~L~kia~Ay~k----lg~~r~~~ell~~A 146 (161)
T PF09205_consen 102 KDQLDKIYNELKKNEEINPEFLVKIANAYKK----LGNTREANELLKEA 146 (161)
T ss_dssp HHHHHHHHHHH-----S-HHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHH----hcchhhHHHHHHHH
Confidence 5555555666655555689999999999999 99999999664443
No 472
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=28.93 E-value=4.3e+02 Score=23.69 Aligned_cols=87 Identities=13% Similarity=-0.012 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 202 ~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
+++.+.....++..+.+ .-..++|+ ..+-..+..+ ++-.....+.++.+++. ..|+
T Consensus 165 d~t~~l~~Ry~amF~LR----n~g~EeaI-------~al~~~l~~~--SalfrhEvAfVfGQl~s-----------~~ai 220 (289)
T KOG0567|consen 165 DETKPLFERYRAMFYLR----NIGTEEAI-------NALIDGLADD--SALFRHEVAFVFGQLQS-----------PAAI 220 (289)
T ss_pred hcchhHHHHHhhhhHhh----ccCcHHHH-------HHHHHhcccc--hHHHHHHHHHHHhhccc-----------hhhh
Confidence 44444555555555554 44457777 6677777655 66667778888888888 8999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
..+.+.+.....++.+.+.-+.++...++.+
T Consensus 221 ~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~ 251 (289)
T KOG0567|consen 221 PSLIKVLLDETEHPMVRHEAAEALGAIADED 251 (289)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHhhcCHH
Confidence 9999999998899988888777777777543
No 473
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.59 E-value=1.2e+03 Score=29.25 Aligned_cols=90 Identities=23% Similarity=0.269 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHH
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (365)
+..+...|..+.+ .|+.++|- +.|..|++++-..+.+|...|.-+.+.-+-++.- ..--..|+.+|-
T Consensus 2812 aeff~lkG~f~~k----L~~~eeAn-------~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~n--i~~a~~avsCyL 2878 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEK----LGKFEEAN-------KAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVN--ISFACNAVSCYL 2878 (3550)
T ss_pred HHHHHhhhHHHHH----hcCcchhH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcc--cHHHHHHHHHHH
Confidence 4566778888888 99999999 7788888888888999999998776654321110 122357888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 286 AAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 286 ~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+|....- ...+.-.++.+++-+.
T Consensus 2879 qA~~~~~-~skaRk~iakvLwLls 2901 (3550)
T KOG0889|consen 2879 QAARLYN-SSKARKLIAKVLWLLS 2901 (3550)
T ss_pred HHhcccc-chhhHHHHHHHHHHHH
Confidence 8887653 2444555666666544
No 474
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.32 E-value=6.7e+02 Score=26.81 Aligned_cols=123 Identities=15% Similarity=0.024 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH--DAFYNWAIAI 216 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~ 216 (365)
-.+.|+..|...++..+.-.++..+.+.++...+. +.++.+.+-+....+++.. -.....+.+.
T Consensus 239 yme~a~~~~~~i~k~~~~A~rc~l~~aei~k~~~l--------------h~eaa~~~~r~~see~dl~~allleqaal~f 304 (960)
T KOG1938|consen 239 YMENAFPLYRLILKNYQDANRCVLNSAEILKFLGL--------------HKEAAEALARETSEEGDLLSALLLEQAALCF 304 (960)
T ss_pred HHhhhhHHHHHHHhhccchhhhccCchHHHHHHHH--------------HHHHHHHHHHhhCcCchhhhHHHHHHHHHHh
Confidence 35667788888888766666677777777777777 7777777776666555421 1122211111
Q ss_pred H------------------HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCcchhHH
Q 017806 217 S------------------DRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQALNNWGLALQELSAIVPARE 272 (365)
Q Consensus 217 ~------------------~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~~~~ 272 (365)
. .++...|....|+ .+|..++..-+. ..-.++.++.+|.-.+.
T Consensus 305 ~~tkp~m~~ktffHpVLal~r~s~anqp~ha~-------R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~l~~~------ 371 (960)
T KOG1938|consen 305 GSTKPPMPRKTFFHPVLALIRFSSANQPKHAL-------RCYRQAIPVLKKPTWSFAEDHLYFTILHVYLLCQE------ 371 (960)
T ss_pred hcCCCCccchhhcceeehhhhcccCCChhHHH-------HHHHHHhhhcCCCCcchhHHhHHHhHHHhhhhhcc------
Confidence 1 0112255566666 556666554332 12355566666666666
Q ss_pred hhhHHHHHHHHHHHHHHhCCC
Q 017806 273 KQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~p~ 293 (365)
+.|-..|.+.+...+.
T Consensus 372 -----D~a~~~f~~~i~~~~k 387 (960)
T KOG1938|consen 372 -----DDADEEFSKLIADCMK 387 (960)
T ss_pred -----hhHHHHHHHHHhhhhh
Confidence 7777778777765443
No 475
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=28.08 E-value=74 Score=29.05 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
-.+|+.+|++|+....+ |.+-+|+..|..|+++.|+....+.
T Consensus 16 ~kkA~~l~~~av~~Eq~-----G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKEQD-----GSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHHhhc-----CcHHHHHHHHHhhhcCCchHHHHHH
Confidence 46777788877765433 4477788888888888776555444
No 476
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=27.54 E-value=1.6e+02 Score=22.75 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA 208 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 208 (365)
...+|..+...|+ +++|..+|-+|+...|.-.+.
T Consensus 66 qV~lGE~L~~~G~--------------~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 66 QVQLGEQLLAQGD--------------YEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHTT---------------HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHhCCC--------------HHHHHHHHHHHHHhCCCHHHH
Confidence 3467888888898 999999999999999875543
No 477
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.97 E-value=6.3e+02 Score=25.05 Aligned_cols=105 Identities=14% Similarity=-0.062 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 189 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
+.+.+.+.......|.++....+.+..+.. .|+.+.|+.+++.++..-.+ .-..-.++.+|.++..+.++
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~----~g~~eaa~~~~~~~v~~~~k-----Q~~~l~~fE~aw~~v~~~~~- 319 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSI----KGNSEAAIDMESLSIPIRMK-----QVKSLMVFERAWLSVGQHQY- 319 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHH----cccHHHHHHHHHhcccHHHH-----HHHHHHHHHHHHHHHHHHHH-
Confidence 666777777778899999999999999999 99988888555544441000 11345667788888888885
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhhhhh
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYN-LGTVLYGLAEDT 312 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~ 312 (365)
..|-..+......+.=....|.. .|-|++..+...
T Consensus 320 ---------~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~ 355 (546)
T KOG3783|consen 320 ---------SRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVN 355 (546)
T ss_pred ---------HHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHH
Confidence 88888888877664322223333 345555444433
No 478
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.94 E-value=4.3e+02 Score=25.25 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.++..+|.-|.. .|+++.|++.|-++..++..+-. ....|.|+-.+-..+|++
T Consensus 151 ra~~Dl~dhy~~----cG~l~~Alr~YsR~RdYCTs~kh----vInm~ln~i~VSI~~~nw 203 (466)
T KOG0686|consen 151 RALEDLGDHYLD----CGQLDNALRCYSRARDYCTSAKH----VINMCLNLILVSIYMGNW 203 (466)
T ss_pred HHHHHHHHHHHH----hccHHHHHhhhhhhhhhhcchHH----HHHHHHHHHHHHHhhcch
Confidence 578889999999 99999999776665555544322 345666666677777776
No 479
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=26.87 E-value=2.4e+02 Score=20.06 Aligned_cols=36 Identities=6% Similarity=0.037 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
.++.-...+..+++.-.+.++.+|++|.++-.+-..
T Consensus 15 ~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~ 50 (80)
T PRK15326 15 KFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSK 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 344444444555566667788999999876544433
No 480
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=26.14 E-value=6.7e+02 Score=25.09 Aligned_cols=161 Identities=11% Similarity=-0.041 Sum_probs=98.6
Q ss_pred cHHHHHHHHHHhhccChhhhhhh-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHH
Q 017806 115 QNNAAMELINSVTGVDEEGRSRQ-RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193 (365)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~ 193 (365)
-+..|..+.+.++.-.|.+..-. |++++|+...++-.. +....-.....|.++...++ +.-..=..
T Consensus 299 ~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~-~~~~~lpi~~~~~lle~~d~------------~~~~~l~~ 365 (547)
T PF14929_consen 299 AYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCI-SSTCALPIRLRAHLLEYFDQ------------NNSSVLSS 365 (547)
T ss_pred HHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhcc-CCCccchHHHHHHHHHHhCc------------ccHHHHHH
Confidence 35677778877777777764333 688888777665432 22334445556666666652 11677789
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCcchhHH
Q 017806 194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPARE 272 (365)
Q Consensus 194 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~ 272 (365)
+|+..++++|........+...+. . ...+.++++ + ..--+.+.| ...+|..+..++.+ .+++
T Consensus 366 ~~e~~~~~~P~~~~~le~l~~~~~------~-~~~~~~Lle-~---i~~~l~~~~-s~~iwle~~~~~l~~~~~~----- 428 (547)
T PF14929_consen 366 CLEDCLKKDPTMSYSLERLILLHQ------K-DYSAEQLLE-M---IALHLDLVP-SHPIWLEFVSCFLKNPSRF----- 428 (547)
T ss_pred HHHHHhcCCCcHHHHHHHHHhhhh------h-HHHHHHHHH-H---HHHHhhcCC-CchHHHHHHHHHHhccccc-----
Confidence 999999999998777776666552 2 344443322 1 111233343 57899999999998 5553
Q ss_pred hhhHHHHHHHHHHHHH-------Hh--CCCCHHHHHHHHHHHHHhhh
Q 017806 273 KQTIVRTAISKFRAAI-------QL--QFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al-------~~--~p~~~~~~~~lg~~~~~~g~ 310 (365)
+.-.+..+.++ .. .-.+..+|..+...+.+...
T Consensus 429 -----~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 429 -----EDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred -----cccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhh
Confidence 43344444444 22 24556788888777665543
No 481
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.89 E-value=2.1e+02 Score=26.76 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCc
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+...|.-.+. +++++.|...|..|........ .-.-.+..+++.+|..++.+++.
T Consensus 44 lv~~G~~~~~----~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~ 99 (400)
T KOG4563|consen 44 LVQAGRRALC----NNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKE 99 (400)
T ss_pred HHHhhhHHHh----cccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777 9999999977777766555544 22345688999999999998886
No 482
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=25.29 E-value=3.6e+02 Score=22.13 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
+.-..+-+.|++++..+.....+.+.+.+.+.++|..+-..+.
T Consensus 81 ~~g~s~~eaw~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~ 123 (171)
T PRK08307 81 GEGETAYEAWEKALEENWKNTALKKEDIEILLQFGKTLGQSDR 123 (171)
T ss_pred CCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcH
Confidence 3334445556667777777777788888999999988766544
No 483
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.22 E-value=2.9e+02 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al 244 (365)
.|+|+.++..|.+|-..|....
T Consensus 99 ~~dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 99 KGDYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred cCcHHHHHHHHHHHHHHHHHhh
Confidence 7999999988888877776653
No 484
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.01 E-value=5.7e+02 Score=25.77 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
....+..+..+-..+. .++|-++|++.+..+|+ ..++..+.-+.+ .|-...|.
T Consensus 42 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~ 94 (578)
T PRK15490 42 SLAMLKKAEFLHDVNE--------------TERAYALYETLIAQNND--EARYEYARRLYN----TGLAKDAQ 94 (578)
T ss_pred HHHHHHHhhhhhhhhh--------------hHhHHHHHHHHHHhCCc--chHHHHHHHHHh----hhhhhHHH
Confidence 3344445555555566 77777888887777777 455666666666 66655555
No 485
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=24.99 E-value=5.7e+02 Score=23.81 Aligned_cols=47 Identities=17% Similarity=0.022 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+..-+|+..++.++..+|.|......|..+|.. +|-...|...|+.
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~----LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSL----LGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHh
Confidence 3448899999999999999999999999999999 9999999976654
No 486
>PRK11619 lytic murein transglycosylase; Provisional
Probab=24.49 E-value=7.8e+02 Score=25.24 Aligned_cols=50 Identities=12% Similarity=-0.066 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
.++++... .++...-....+.....+.+|.++...|+. ++|...|+++..
T Consensus 325 ~~dw~~~~-------~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~----------~~A~~~~~~~a~ 374 (644)
T PRK11619 325 TGDRRGLN-------TWLARLPMEAKEKDEWRYWQADLLLEQGRK----------AEAEEILRQLMQ 374 (644)
T ss_pred ccCHHHHH-------HHHHhcCHhhccCHhhHHHHHHHHHHcCCH----------HHHHHHHHHHhc
Confidence 67776655 334432222224567778888888888886 888888888743
No 487
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=24.28 E-value=2.8e+02 Score=22.28 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHHHHHHHhc-CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 162 YNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209 (365)
Q Consensus 162 ~~lg~~~~~~~-~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 209 (365)
..+|..+...| + .+++..+|-+||...|.-.+.+
T Consensus 94 V~~GE~L~~~g~~--------------~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 94 VQLGEELMAQGTN--------------VDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHHhCCCc--------------hHHHHHHHHHHHHhCCCHHHHH
Confidence 46788888888 7 9999999999999988755543
No 488
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.53 E-value=7.6e+02 Score=24.77 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA-FYNWAIAI 216 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~ 216 (365)
.....|...+...-+.++....+...+..+|....+ ...-+..|-.-++.+|+...- -..++.+.
T Consensus 245 ~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~e--------------a~~el~~~~~~le~Dp~~L~~ve~Rl~~L~ 310 (557)
T COG0497 245 SLLGRALEALEDLSEYDGKLSELAELLEEALYELEE--------------ASEELRAYLDELEFDPNRLEEVEERLFALK 310 (557)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 345566666666667777777777777777777665 555555566666667764332 22233322
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHHH
Q 017806 217 SDRAKM-RGRTKEAEELWKQATKNY 240 (365)
Q Consensus 217 ~~~~~~-~g~~~~A~~~~~~A~~~~ 240 (365)
.- .++ ....++.+.+.++....+
T Consensus 311 ~l-~RKY~~~~~~l~~~~~~~~~el 334 (557)
T COG0497 311 SL-ARKYGVTIEDLLEYLDKIKEEL 334 (557)
T ss_pred HH-HHHhCCCHHHHHHHHHHHHHHH
Confidence 22 111 233566665544443333
No 489
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=23.08 E-value=7.1e+02 Score=25.10 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.+.+....+.-+.-....+......+..+.. .|..+.|- .+|++.+..+|+ ..++.++.-+.+.|-.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (578)
T PRK15490 24 LAQAVALIDSELPTEALTSLAMLKKAEFLHD----VNETERAY-------ALYETLIAQNND--EARYEYARRLYNTGLA 90 (578)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHHhhhhhh----hhhhHhHH-------HHHHHHHHhCCc--chHHHHHHHHHhhhhh
Confidence 5555555554443344455566666667767 77777777 789999999988 7778888888888876
Q ss_pred chhHHhhhHHHHHHHHHH
Q 017806 268 VPAREKQTIVRTAISKFR 285 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~ 285 (365)
..|...++
T Consensus 91 ----------~~~~~~~~ 98 (578)
T PRK15490 91 ----------KDAQLILK 98 (578)
T ss_pred ----------hHHHHHHH
Confidence 66665555
No 490
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.54 E-value=6.4e+02 Score=23.58 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHhcCCHHHHHHH-HHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEEL-WKQ 235 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~g~~~~A~~~-~~~ 235 (365)
..+.+|.-|....++.+|+....+...+-+.|.+.|.+.++...... ..-.+++..+.. ..++++. |.-
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae-------~s~~i~n~Y~n 199 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAE-------VSEILNNTYSN 199 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH-------HHHHHHHHHHH
Confidence 45677777888888666666666666666666666666665321100 001112221111 1111110 000
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
=...|+. ..+-.++-+-+..|..+.-.++. .++...+.+++-+.|+....
T Consensus 200 y~~~yea--~~~l~npYv~Yl~~lf~a~n~dv----------~kg~~~~~e~~gi~qd~~~~ 249 (449)
T COG3014 200 YLDKYEA--YQGLLNPYVSYLSGLFYALNGDV----------NKGLGYLNEAYGISQDQSPF 249 (449)
T ss_pred HHHHHHh--hcccchHHHHHHHHHhcccCccH----------hHHHHHHHHHhccCchhhHH
Confidence 0012221 11234566667777777777774 88889999998888874443
No 491
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=22.33 E-value=2e+02 Score=17.62 Aligned_cols=29 Identities=10% Similarity=-0.060 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.|..+|-.+|++...+..++..+...|+.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp 32 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDP 32 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCH
Confidence 47788889999999999999999999985
No 492
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.30 E-value=1.4e+02 Score=16.01 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~ 200 (365)
.|..+-.++.+.|+ ++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~--------------~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGD--------------PDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCC--------------HHHHHHHHHHHHH
Confidence 46777788888898 9999999988765
No 493
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=21.73 E-value=1.1e+03 Score=26.16 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHhc--------------------CcchhHHhhhHHHHHHHHH
Q 017806 231 ELWKQATKNYEKAVQL----NWN--SPQALNNWGLALQELS--------------------AIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~~--------------------~~~~~~~~~~~~~~A~~~~ 284 (365)
..+++++.+|.++... .|. +.++...++..+.... .. .++....
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~----------~eI~~~l 428 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSR----------SEIAEFL 428 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCH----------HHHHHHH
Confidence 3578889999998632 233 3467777777777777 43 7778888
Q ss_pred HHHHHhCCC------CHHHHHHHHHHHHHhhhh
Q 017806 285 RAAIQLQFD------FHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 285 ~~al~~~p~------~~~~~~~lg~~~~~~g~~ 311 (365)
.+++..... ....+..++.+|..+|-.
T Consensus 429 ~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~ 461 (1185)
T PF08626_consen 429 FKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFH 461 (1185)
T ss_pred HHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchh
Confidence 888766432 256888899999999843
No 494
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=21.49 E-value=6.7e+02 Score=23.37 Aligned_cols=114 Identities=25% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----------------CPTLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~ 221 (365)
.-+++|+|.++..++. ..... ....+.+|..+|++|-.+ +|....++..+..+..+
T Consensus 107 a~vL~N~aa~~s~~a~----~~~~~-~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQ--- 178 (377)
T PF03097_consen 107 ACVLFNIAALYSQLAA----SQNRS-TDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQ--- 178 (377)
T ss_dssp HHHHHHHHHHHHHHHH----HS-TT-SHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHH----hcccc-cchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHH---
Q ss_pred hcCCHHHHHHH----------HHHHHHHHHHHHhcCCCCHH----------------------HHHHHHHHHHHhcCcch
Q 017806 222 MRGRTKEAEEL----------WKQATKNYEKAVQLNWNSPQ----------------------ALNNWGLALQELSAIVP 269 (365)
Q Consensus 222 ~~g~~~~A~~~----------~~~A~~~~~~al~~~p~~~~----------------------~~~~lg~~~~~~~~~~~ 269 (365)
.--+..|+.. ..++...|+.+...-..... +++..|......+++
T Consensus 179 -e~~~~ka~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~-- 255 (377)
T PF03097_consen 179 -ECFYEKAIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKY-- 255 (377)
T ss_dssp -HHHHHHHHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-H--
T ss_pred -HHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q ss_pred hHHhhhHHHHHHHHHHHHHHh
Q 017806 270 AREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+|+..++.|...
T Consensus 256 --------G~aia~L~~A~~~ 268 (377)
T PF03097_consen 256 --------GEAIARLRRAEEA 268 (377)
T ss_dssp --------HHHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHH
No 495
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.71 E-value=3.6e+02 Score=20.03 Aligned_cols=46 Identities=22% Similarity=0.045 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
....|.+... .|++..|. +...++-+..+...-.+..-+.+-..+|
T Consensus 62 al~~Gl~al~----~G~~~~A~-------k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALA----EGDWQRAE-------KLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHH----CCCHHHHH-------HHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3344555566 89999999 7788876665554445544455555544
No 496
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=20.51 E-value=4.8e+02 Score=21.38 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
..+-+.|++++..+.+-..+.+.+.+.+.++|..+-..+.
T Consensus 83 ~s~~~~w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~D~ 122 (170)
T TIGR02833 83 LTVYEAWKKALNEVWKQTALQKSEKEILLQFGKTLGESDR 122 (170)
T ss_pred CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcH
Confidence 3444456666676666667777788888888888766544
No 497
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=20.45 E-value=7.4e+02 Score=23.85 Aligned_cols=25 Identities=28% Similarity=0.044 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 273 KQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
|.++|..|....++.|++.|....+
T Consensus 312 K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 312 KLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp CTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HhccHHHHHHHHHHHHHcCCCHHHH
Confidence 4455799999999999999876543
Done!