Query 017806
Match_columns 365
No_of_seqs 338 out of 3803
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 05:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.9 1.8E-26 6.3E-31 199.4 20.7 186 96-318 2-208 (217)
2 2h6f_A Protein farnesyltransfe 99.9 2E-26 6.9E-31 215.7 19.4 187 92-309 90-288 (382)
3 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-23 3.8E-28 176.3 20.3 163 135-351 16-178 (184)
4 1w3b_A UDP-N-acetylglucosamine 99.9 4.4E-24 1.5E-28 199.8 19.5 233 93-354 95-379 (388)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.5E-24 1.9E-28 199.1 19.8 191 92-318 60-260 (388)
6 4eqf_A PEX5-related protein; a 99.9 3E-24 1E-28 199.2 17.7 205 98-324 64-310 (365)
7 2h6f_A Protein farnesyltransfe 99.9 9.3E-24 3.2E-28 197.6 19.5 222 92-355 124-360 (382)
8 3ieg_A DNAJ homolog subfamily 99.9 6.8E-22 2.3E-26 181.4 27.6 224 92-360 64-352 (359)
9 4gyw_A UDP-N-acetylglucosamine 99.9 2.6E-23 8.9E-28 209.0 19.0 165 93-317 3-167 (723)
10 2q7f_A YRRB protein; TPR, prot 99.9 3.3E-22 1.1E-26 173.9 22.5 209 98-361 22-240 (243)
11 2pl2_A Hypothetical conserved 99.9 2.7E-22 9.3E-27 173.1 21.7 154 133-322 14-178 (217)
12 4i17_A Hypothetical protein; T 99.9 1.7E-22 5.9E-27 175.1 20.4 191 135-360 18-226 (228)
13 3hym_B Cell division cycle pro 99.9 3.6E-22 1.2E-26 181.4 23.5 201 92-328 83-303 (330)
14 1fch_A Peroxisomal targeting s 99.9 4.5E-23 1.5E-27 190.8 17.3 157 186-363 195-366 (368)
15 3uq3_A Heat shock protein STI1 99.9 3E-22 1E-26 175.5 19.6 205 97-356 3-255 (258)
16 4abn_A Tetratricopeptide repea 99.9 2E-22 6.9E-27 194.3 18.6 190 92-318 95-315 (474)
17 3hym_B Cell division cycle pro 99.9 3.6E-22 1.2E-26 181.5 19.1 230 92-357 49-300 (330)
18 3ieg_A DNAJ homolog subfamily 99.9 5.8E-22 2E-26 181.8 20.4 170 92-297 30-224 (359)
19 2vq2_A PILW, putative fimbrial 99.9 3.4E-21 1.2E-25 165.2 22.6 206 94-354 3-222 (225)
20 3u4t_A TPR repeat-containing p 99.9 1.1E-21 3.8E-26 173.9 20.1 213 92-359 30-266 (272)
21 4eqf_A PEX5-related protein; a 99.9 1.1E-21 3.7E-26 181.8 20.8 188 92-315 126-347 (365)
22 3cv0_A Peroxisome targeting si 99.9 3.1E-22 1.1E-26 181.6 16.7 212 92-326 48-271 (327)
23 2y4t_A DNAJ homolog subfamily 99.9 4.6E-21 1.6E-25 182.3 25.5 228 92-355 87-370 (450)
24 3u4t_A TPR repeat-containing p 99.9 2.2E-22 7.7E-27 178.3 14.0 225 98-359 2-253 (272)
25 4ga2_A E3 SUMO-protein ligase 99.9 2.5E-22 8.5E-27 163.1 12.8 141 135-310 8-149 (150)
26 2ho1_A Type 4 fimbrial biogene 99.9 3.6E-21 1.2E-25 168.7 20.9 207 93-354 30-249 (252)
27 2y4t_A DNAJ homolog subfamily 99.9 1.6E-21 5.5E-26 185.5 19.4 186 93-314 20-230 (450)
28 1fch_A Peroxisomal targeting s 99.9 5.4E-21 1.8E-25 176.8 22.0 191 92-318 125-353 (368)
29 3fp2_A TPR repeat-containing p 99.9 2.2E-20 7.5E-25 181.5 25.1 207 92-324 229-491 (537)
30 3cv0_A Peroxisome targeting si 99.9 8.6E-21 2.9E-25 172.1 20.7 195 92-322 82-313 (327)
31 2q7f_A YRRB protein; TPR, prot 99.9 9.8E-21 3.4E-25 164.6 19.2 182 92-309 50-241 (243)
32 3vtx_A MAMA; tetratricopeptide 99.9 1E-20 3.6E-25 158.1 18.5 163 97-295 3-175 (184)
33 3qky_A Outer membrane assembly 99.9 1.4E-20 4.9E-25 166.5 20.2 197 93-315 9-252 (261)
34 2xpi_A Anaphase-promoting comp 99.9 5.1E-20 1.8E-24 181.5 25.7 209 93-356 367-592 (597)
35 4i17_A Hypothetical protein; T 99.9 1.3E-20 4.4E-25 163.2 18.8 186 95-306 3-225 (228)
36 4gco_A Protein STI-1; structur 99.9 4E-21 1.4E-25 151.2 14.1 122 149-305 4-125 (126)
37 4abn_A Tetratricopeptide repea 99.9 3.3E-20 1.1E-24 178.8 21.2 180 112-327 80-290 (474)
38 2pzi_A Probable serine/threoni 99.9 5.2E-21 1.8E-25 192.4 15.6 189 82-310 376-583 (681)
39 3mkr_A Coatomer subunit epsilo 99.9 1.2E-19 4.1E-24 163.7 22.6 200 95-353 61-274 (291)
40 2xpi_A Anaphase-promoting comp 99.8 3.5E-20 1.2E-24 182.7 20.4 235 96-359 302-582 (597)
41 4gyw_A UDP-N-acetylglucosamine 99.8 1.2E-20 4.2E-25 189.7 16.9 173 153-360 4-178 (723)
42 4g1t_A Interferon-induced prot 99.8 1.1E-20 3.8E-25 181.0 16.0 190 93-311 88-297 (472)
43 3fp2_A TPR repeat-containing p 99.8 5.1E-20 1.7E-24 178.9 19.5 194 138-352 216-466 (537)
44 3uq3_A Heat shock protein STI1 99.8 4.7E-20 1.6E-24 161.4 16.6 171 99-305 79-257 (258)
45 4ga2_A E3 SUMO-protein ligase 99.8 3.4E-20 1.2E-24 150.4 14.5 137 104-266 2-149 (150)
46 3urz_A Uncharacterized protein 99.8 2.5E-19 8.5E-24 153.4 18.6 161 135-348 15-191 (208)
47 2gw1_A Mitochondrial precursor 99.8 6.9E-20 2.4E-24 176.7 16.8 210 92-357 264-492 (514)
48 2gw1_A Mitochondrial precursor 99.8 3.7E-20 1.3E-24 178.6 13.8 201 92-319 66-396 (514)
49 4g1t_A Interferon-induced prot 99.8 6.3E-19 2.2E-23 168.8 22.3 207 94-327 46-279 (472)
50 2pzi_A Probable serine/threoni 99.8 4.7E-19 1.6E-23 178.1 19.2 158 135-328 402-567 (681)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 7.4E-19 2.5E-23 155.5 17.8 156 102-294 8-177 (275)
52 4gco_A Protein STI-1; structur 99.8 3.3E-19 1.1E-23 140.2 13.1 119 93-261 7-125 (126)
53 3as5_A MAMA; tetratricopeptide 99.8 1.5E-18 5.2E-23 143.6 17.7 164 97-296 6-179 (186)
54 3gyz_A Chaperone protein IPGC; 99.8 1.4E-19 4.6E-24 146.9 10.9 122 139-295 17-138 (151)
55 2ond_A Cleavage stimulation fa 99.8 3.3E-19 1.1E-23 161.9 14.2 188 92-314 43-260 (308)
56 2ho1_A Type 4 fimbrial biogene 99.8 2E-18 6.7E-23 151.1 17.6 189 134-357 47-239 (252)
57 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.1E-19 3.1E-23 154.9 15.5 195 95-327 39-247 (275)
58 1ouv_A Conserved hypothetical 99.8 3.2E-18 1.1E-22 152.1 19.0 172 96-307 35-230 (273)
59 2vq2_A PILW, putative fimbrial 99.8 5.6E-18 1.9E-22 144.9 19.7 159 133-326 17-178 (225)
60 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.7E-22 150.9 22.1 168 94-299 96-273 (291)
61 3as5_A MAMA; tetratricopeptide 99.8 7.7E-18 2.6E-22 139.3 18.4 145 133-312 17-161 (186)
62 4a1s_A PINS, partner of inscut 99.8 1E-19 3.5E-24 171.0 7.5 204 96-318 45-326 (411)
63 1qqe_A Vesicular transport pro 99.8 1.4E-18 4.9E-23 156.6 14.8 175 114-327 31-231 (292)
64 2vgx_A Chaperone SYCD; alterna 99.8 6.7E-19 2.3E-23 142.4 11.3 132 143-309 6-137 (148)
65 2ond_A Cleavage stimulation fa 99.8 5.9E-18 2E-22 153.6 17.2 208 117-359 33-273 (308)
66 3urz_A Uncharacterized protein 99.8 9.1E-18 3.1E-22 143.6 17.4 168 157-359 3-189 (208)
67 3qky_A Outer membrane assembly 99.8 1.7E-17 5.8E-22 146.6 19.5 186 134-359 25-240 (261)
68 1p5q_A FKBP52, FK506-binding p 99.8 3.1E-19 1.1E-23 164.3 8.2 143 137-314 126-283 (336)
69 3sf4_A G-protein-signaling mod 99.8 5E-19 1.7E-23 165.3 9.4 203 97-319 7-291 (406)
70 3nf1_A KLC 1, kinesin light ch 99.8 2.4E-18 8.4E-23 154.7 13.3 168 94-290 22-224 (311)
71 1qqe_A Vesicular transport pro 99.8 4.9E-18 1.7E-22 153.1 14.0 161 101-297 39-235 (292)
72 3ro2_A PINS homolog, G-protein 99.8 6.9E-19 2.4E-23 159.3 8.0 199 99-317 5-285 (338)
73 3gyz_A Chaperone protein IPGC; 99.8 3.1E-18 1.1E-22 138.9 10.8 131 188-358 18-148 (151)
74 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.2E-17 7.5E-22 142.9 16.6 176 98-295 3-218 (225)
75 2xcb_A PCRH, regulatory protei 99.8 5.6E-18 1.9E-22 135.7 11.7 131 145-310 5-135 (142)
76 2vsy_A XCC0866; transferase, g 99.8 3.9E-17 1.3E-21 160.7 19.9 136 138-308 3-138 (568)
77 3dra_A Protein farnesyltransfe 99.7 6.8E-17 2.3E-21 145.8 19.3 214 92-353 60-298 (306)
78 2hr2_A Hypothetical protein; a 99.7 5.6E-18 1.9E-22 136.6 10.6 124 158-309 11-150 (159)
79 2r5s_A Uncharacterized protein 99.7 4E-18 1.4E-22 141.7 9.8 147 135-316 17-165 (176)
80 1ouv_A Conserved hypothetical 99.7 1.9E-16 6.7E-21 140.6 21.3 222 95-356 2-251 (273)
81 2vsy_A XCC0866; transferase, g 99.7 3.4E-17 1.2E-21 161.2 16.8 155 113-302 2-169 (568)
82 3upv_A Heat shock protein STI1 99.7 7.9E-17 2.7E-21 125.9 15.1 118 155-307 1-124 (126)
83 3qou_A Protein YBBN; thioredox 99.7 2.4E-17 8.3E-22 148.2 13.7 146 135-315 128-275 (287)
84 3ulq_A Response regulator aspa 99.7 1.1E-17 3.6E-22 156.4 11.6 229 101-360 105-372 (383)
85 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.5E-16 8.5E-21 136.2 19.4 150 134-314 14-203 (225)
86 3sz7_A HSC70 cochaperone (SGT) 99.7 2.1E-16 7.3E-21 129.5 16.2 121 154-309 7-127 (164)
87 2e2e_A Formate-dependent nitri 99.7 8.4E-17 2.9E-21 133.4 13.5 133 134-301 20-155 (177)
88 3edt_B KLC 2, kinesin light ch 99.7 2.5E-16 8.6E-21 139.1 16.0 147 134-308 53-225 (283)
89 3dss_A Geranylgeranyl transfer 99.7 3.1E-15 1.1E-19 135.8 23.0 227 92-352 57-313 (331)
90 3sf4_A G-protein-signaling mod 99.7 1.4E-16 4.8E-21 148.6 13.5 198 95-322 83-334 (406)
91 4a1s_A PINS, partner of inscut 99.7 5.4E-17 1.9E-21 152.3 10.3 221 93-348 76-377 (411)
92 3dra_A Protein farnesyltransfe 99.7 6.6E-15 2.3E-19 132.8 23.1 190 113-353 29-225 (306)
93 2lni_A Stress-induced-phosphop 99.7 5.4E-16 1.9E-20 121.3 13.8 121 154-309 12-132 (133)
94 2vyi_A SGTA protein; chaperone 99.7 1.1E-15 3.8E-20 118.8 14.9 124 153-311 7-130 (131)
95 1p5q_A FKBP52, FK506-binding p 99.7 1.3E-16 4.5E-21 146.8 11.0 144 112-290 125-294 (336)
96 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 3.9E-17 1.3E-21 156.6 7.8 144 137-315 247-405 (457)
97 2fbn_A 70 kDa peptidylprolyl i 99.7 2.3E-16 7.8E-21 133.5 11.0 144 137-315 17-176 (198)
98 3nf1_A KLC 1, kinesin light ch 99.7 1.8E-16 6.2E-21 142.4 10.9 171 94-293 64-310 (311)
99 4gcn_A Protein STI-1; structur 99.7 1.4E-15 4.9E-20 119.4 14.7 110 157-302 7-123 (127)
100 1zu2_A Mitochondrial import re 99.7 7.8E-16 2.7E-20 123.8 13.2 119 182-304 12-134 (158)
101 3q15_A PSP28, response regulat 99.7 2.9E-16 9.9E-21 146.5 12.5 229 101-360 103-369 (378)
102 1hh8_A P67PHOX, NCF-2, neutrop 99.7 3E-15 1E-19 127.5 17.5 134 135-306 17-166 (213)
103 3dss_A Geranylgeranyl transfer 99.7 1.6E-14 5.6E-19 131.1 23.1 202 116-349 46-273 (331)
104 3q49_B STIP1 homology and U bo 99.7 2.7E-15 9.2E-20 118.4 15.9 125 152-311 3-132 (137)
105 2fo7_A Synthetic consensus TPR 99.7 5.7E-15 2E-19 115.0 17.6 125 135-294 12-136 (136)
106 2vgx_A Chaperone SYCD; alterna 99.7 2.3E-16 7.9E-21 127.4 9.7 118 191-348 6-123 (148)
107 1dce_A Protein (RAB geranylger 99.7 1E-15 3.5E-20 150.2 15.7 149 140-313 89-244 (567)
108 3upv_A Heat shock protein STI1 99.7 1.1E-15 3.8E-20 119.3 12.9 105 135-264 15-125 (126)
109 1na0_A Designed protein CTPR3; 99.7 7.7E-15 2.7E-19 112.9 17.6 122 153-309 3-125 (125)
110 3ro2_A PINS homolog, G-protein 99.7 4.5E-16 1.5E-20 140.7 11.6 188 95-312 79-320 (338)
111 3rkv_A Putative peptidylprolyl 99.7 2.1E-15 7E-20 123.3 14.5 121 158-313 11-150 (162)
112 3qou_A Protein YBBN; thioredox 99.7 1.8E-15 6.2E-20 135.9 15.4 168 154-356 113-284 (287)
113 3edt_B KLC 2, kinesin light ch 99.6 6.4E-16 2.2E-20 136.5 11.9 169 94-291 38-282 (283)
114 1zu2_A Mitochondrial import re 99.6 2.9E-15 1E-19 120.4 14.3 115 135-253 13-127 (158)
115 2r5s_A Uncharacterized protein 99.6 5E-16 1.7E-20 128.9 10.3 167 154-356 2-173 (176)
116 1hxi_A PEX5, peroxisome target 99.6 2.4E-15 8.3E-20 117.0 13.1 102 160-296 19-120 (121)
117 3sz7_A HSC70 cochaperone (SGT) 99.6 1.7E-15 5.7E-20 124.1 12.6 105 135-264 22-126 (164)
118 3ulq_A Response regulator aspa 99.6 9.5E-16 3.2E-20 143.1 12.2 188 97-313 141-357 (383)
119 2xcb_A PCRH, regulatory protei 99.6 1.3E-15 4.6E-20 121.7 11.3 107 135-266 29-135 (142)
120 3q7a_A Farnesyltransferase alp 99.6 4.9E-14 1.7E-18 128.6 22.2 196 112-353 49-247 (349)
121 1a17_A Serine/threonine protei 99.6 2.2E-14 7.5E-19 116.6 18.0 123 158-315 13-137 (166)
122 2ooe_A Cleavage stimulation fa 99.6 1.2E-14 4.2E-19 141.6 19.4 184 92-311 265-479 (530)
123 1elw_A TPR1-domain of HOP; HOP 99.6 1.8E-14 6.2E-19 109.8 16.2 114 157-305 3-116 (118)
124 2fo7_A Synthetic consensus TPR 99.6 4.3E-14 1.5E-18 110.0 18.5 119 159-312 2-120 (136)
125 3q7a_A Farnesyltransferase alp 99.6 5.2E-15 1.8E-19 135.0 15.0 179 112-311 66-258 (349)
126 1a17_A Serine/threonine protei 99.6 2.6E-14 8.8E-19 116.2 17.2 121 135-290 24-146 (166)
127 2xm6_A Protein corresponding t 99.6 1.7E-14 5.7E-19 139.3 18.6 181 97-318 181-390 (490)
128 2lni_A Stress-induced-phosphop 99.6 6.5E-15 2.2E-19 115.0 11.9 123 94-266 11-133 (133)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.6 4.9E-14 1.7E-18 119.9 18.4 122 158-317 6-143 (213)
130 2fbn_A 70 kDa peptidylprolyl i 99.6 2.4E-15 8.1E-20 127.2 9.9 109 134-267 48-172 (198)
131 1dce_A Protein (RAB geranylger 99.6 4.8E-14 1.6E-18 138.3 20.6 189 140-357 45-235 (567)
132 2dba_A Smooth muscle cell asso 99.6 2.5E-14 8.5E-19 114.0 15.4 119 153-306 23-144 (148)
133 2vyi_A SGTA protein; chaperone 99.6 1.5E-14 5.1E-19 112.3 13.7 108 135-267 23-130 (131)
134 2xm6_A Protein corresponding t 99.6 1.1E-13 3.6E-18 133.7 21.9 170 94-307 214-411 (490)
135 2ifu_A Gamma-SNAP; membrane fu 99.6 1.2E-14 4E-19 131.8 14.1 179 113-326 29-225 (307)
136 2c2l_A CHIP, carboxy terminus 99.6 1.8E-14 6.3E-19 128.9 15.0 154 135-328 15-168 (281)
137 2ifu_A Gamma-SNAP; membrane fu 99.6 8.5E-15 2.9E-19 132.7 12.2 163 101-295 38-228 (307)
138 2hr2_A Hypothetical protein; a 99.6 6.4E-15 2.2E-19 118.7 10.0 104 135-263 22-148 (159)
139 2ooe_A Cleavage stimulation fa 99.6 2E-14 7E-19 140.1 15.4 172 117-323 255-453 (530)
140 4f3v_A ESX-1 secretion system 99.6 7.3E-15 2.5E-19 130.0 11.0 174 92-303 33-249 (282)
141 3q15_A PSP28, response regulat 99.6 7.3E-15 2.5E-19 136.9 11.3 160 134-322 111-288 (378)
142 2e2e_A Formate-dependent nitri 99.6 3E-14 1E-18 117.9 13.6 126 182-347 20-148 (177)
143 3rjv_A Putative SEL1 repeat pr 99.6 3.4E-14 1.2E-18 121.7 14.3 177 94-304 13-209 (212)
144 1wao_1 Serine/threonine protei 99.6 3.8E-15 1.3E-19 143.4 9.2 126 135-295 17-155 (477)
145 3u3w_A Transcriptional activat 99.6 2.6E-14 8.8E-19 128.5 14.1 150 134-311 85-252 (293)
146 3rjv_A Putative SEL1 repeat pr 99.6 7.6E-14 2.6E-18 119.5 16.2 177 118-344 4-198 (212)
147 1elr_A TPR2A-domain of HOP; HO 99.6 5.8E-14 2E-18 109.0 14.1 120 156-311 2-128 (131)
148 2c2l_A CHIP, carboxy terminus 99.6 1.4E-14 4.7E-19 129.8 11.6 106 155-295 1-106 (281)
149 2kck_A TPR repeat; tetratricop 99.6 2.6E-14 9E-19 107.9 11.2 107 153-294 1-110 (112)
150 2qfc_A PLCR protein; TPR, HTH, 99.6 1.4E-13 4.7E-18 123.8 17.3 165 96-290 72-266 (293)
151 1na0_A Designed protein CTPR3; 99.5 1.7E-13 5.8E-18 105.3 15.2 106 135-265 20-125 (125)
152 1hxi_A PEX5, peroxisome target 99.5 3.6E-14 1.2E-18 110.3 11.2 93 135-252 28-120 (121)
153 2xev_A YBGF; tetratricopeptide 99.5 1.7E-13 5.8E-18 106.7 15.0 114 159-307 3-122 (129)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 7.3E-15 2.5E-19 140.8 8.5 131 112-267 246-401 (457)
155 3rkv_A Putative peptidylprolyl 99.5 5E-14 1.7E-18 115.0 12.3 137 99-267 11-148 (162)
156 3q49_B STIP1 homology and U bo 99.5 7.1E-14 2.4E-18 110.2 12.8 122 95-266 5-131 (137)
157 3e4b_A ALGK; tetratricopeptide 99.5 1.9E-13 6.6E-18 130.7 18.2 199 94-322 30-314 (452)
158 1elw_A TPR1-domain of HOP; HOP 99.5 1.8E-13 6.1E-18 104.1 14.1 103 135-262 15-117 (118)
159 3e4b_A ALGK; tetratricopeptide 99.5 1.5E-13 5.1E-18 131.4 16.7 172 99-307 141-330 (452)
160 2qfc_A PLCR protein; TPR, HTH, 99.5 5.3E-13 1.8E-17 119.9 19.0 149 134-314 85-255 (293)
161 4f3v_A ESX-1 secretion system 99.5 6.1E-15 2.1E-19 130.5 6.0 177 137-355 19-248 (282)
162 1wao_1 Serine/threonine protei 99.5 1.2E-14 4.3E-19 139.8 8.2 125 160-319 8-134 (477)
163 1ihg_A Cyclophilin 40; ppiase 99.5 1.7E-13 5.8E-18 127.5 15.4 124 158-316 223-362 (370)
164 1hz4_A MALT regulatory protein 99.5 3.7E-13 1.3E-17 124.7 16.6 189 99-323 14-243 (373)
165 2if4_A ATFKBP42; FKBP-like, al 99.5 2.6E-14 8.8E-19 131.5 8.5 129 134-296 189-334 (338)
166 4gcn_A Protein STI-1; structur 99.5 1.9E-13 6.4E-18 107.1 12.2 112 205-349 7-118 (127)
167 3k9i_A BH0479 protein; putativ 99.5 4.6E-14 1.6E-18 108.7 8.3 103 186-309 4-109 (117)
168 3u3w_A Transcriptional activat 99.5 2E-13 6.9E-18 122.7 13.5 158 104-290 80-266 (293)
169 3k9i_A BH0479 protein; putativ 99.5 6.1E-14 2.1E-18 108.0 8.2 104 137-265 3-109 (117)
170 2dba_A Smooth muscle cell asso 99.5 2.9E-13 1E-17 107.7 12.3 119 94-262 23-144 (148)
171 2if4_A ATFKBP42; FKBP-like, al 99.5 1.7E-14 5.8E-19 132.7 5.6 121 154-309 175-312 (338)
172 1hz4_A MALT regulatory protein 99.5 4.8E-13 1.6E-17 124.0 14.9 182 101-318 55-276 (373)
173 1elr_A TPR2A-domain of HOP; HO 99.4 9.1E-13 3.1E-17 102.1 11.9 107 135-267 15-128 (131)
174 2kck_A TPR repeat; tetratricop 99.4 5.6E-13 1.9E-17 100.4 10.0 106 95-250 2-110 (112)
175 2xev_A YBGF; tetratricopeptide 99.4 4.9E-12 1.7E-16 98.3 15.2 107 134-265 12-124 (129)
176 3gw4_A Uncharacterized protein 99.4 1.7E-12 5.8E-17 109.1 12.5 153 135-316 3-168 (203)
177 1ihg_A Cyclophilin 40; ppiase 99.4 1.7E-12 5.7E-17 120.8 13.0 110 133-267 232-357 (370)
178 1xi4_A Clathrin heavy chain; a 99.4 1.7E-11 5.9E-16 127.2 19.9 213 105-355 1055-1308(1630)
179 3gw4_A Uncharacterized protein 99.4 4E-12 1.4E-16 106.8 12.7 145 135-309 37-194 (203)
180 2kat_A Uncharacterized protein 99.4 9.1E-12 3.1E-16 95.2 13.5 102 190-312 3-106 (115)
181 2kat_A Uncharacterized protein 99.3 1.3E-11 4.4E-16 94.3 12.4 100 142-266 3-104 (115)
182 2l6j_A TPR repeat-containing p 99.3 2.1E-12 7.3E-17 97.5 6.7 86 157-267 3-94 (111)
183 1na3_A Designed protein CTPR2; 99.3 2.4E-11 8.3E-16 88.1 11.7 85 156-265 7-91 (91)
184 1xi4_A Clathrin heavy chain; a 99.3 1.5E-10 5.1E-15 120.3 21.6 189 93-309 1099-1328(1630)
185 3ro3_A PINS homolog, G-protein 99.3 9.2E-12 3.1E-16 99.9 10.2 147 99-293 9-161 (164)
186 2l6j_A TPR repeat-containing p 99.3 1.8E-11 6.1E-16 92.3 11.2 93 205-318 3-101 (111)
187 1na3_A Designed protein CTPR2; 99.3 2.9E-11 9.8E-16 87.7 11.4 85 204-309 7-91 (91)
188 1b89_A Protein (clathrin heavy 99.3 1.6E-12 5.5E-17 121.5 5.0 200 97-356 30-236 (449)
189 3ro3_A PINS homolog, G-protein 99.2 6.8E-11 2.3E-15 94.7 11.9 127 158-313 9-147 (164)
190 1b89_A Protein (clathrin heavy 99.2 1.3E-11 4.6E-16 115.2 8.6 168 97-309 59-255 (449)
191 3mv2_B Coatomer subunit epsilo 99.2 3.7E-10 1.3E-14 101.1 15.7 160 135-353 111-292 (310)
192 3ma5_A Tetratricopeptide repea 99.2 1.6E-10 5.6E-15 86.1 11.1 90 201-311 2-93 (100)
193 3ma5_A Tetratricopeptide repea 99.2 2.2E-10 7.4E-15 85.4 11.0 89 153-266 2-92 (100)
194 2kc7_A BFR218_protein; tetratr 99.2 9.2E-11 3.1E-15 86.8 8.3 92 161-295 3-95 (99)
195 4b4t_Q 26S proteasome regulato 99.2 2.3E-10 7.7E-15 107.8 12.7 185 101-315 6-236 (434)
196 1klx_A Cysteine rich protein B 99.2 1.4E-09 4.7E-14 86.2 15.3 127 136-303 7-137 (138)
197 3n71_A Histone lysine methyltr 99.1 3.8E-10 1.3E-14 108.3 11.1 129 135-291 320-465 (490)
198 3ly7_A Transcriptional activat 99.1 3.6E-09 1.2E-13 96.4 15.9 132 138-295 213-344 (372)
199 4b4t_Q 26S proteasome regulato 99.0 5.9E-10 2E-14 105.0 10.4 155 135-318 15-198 (434)
200 3u64_A Protein TP_0956; tetrat 99.0 2.4E-09 8.3E-14 93.8 12.8 118 152-293 146-272 (301)
201 3mv2_B Coatomer subunit epsilo 99.0 6.4E-09 2.2E-13 93.1 14.1 163 96-299 97-291 (310)
202 3n71_A Histone lysine methyltr 99.0 4.3E-09 1.5E-13 101.0 13.3 112 188-313 325-453 (490)
203 3ly7_A Transcriptional activat 99.0 1E-07 3.5E-12 86.9 21.4 161 149-351 185-347 (372)
204 2kc7_A BFR218_protein; tetratr 98.9 1.4E-08 4.8E-13 74.8 10.8 77 209-306 3-82 (99)
205 4e6h_A MRNA 3'-END-processing 98.8 6.9E-08 2.3E-12 96.2 17.0 184 92-311 336-557 (679)
206 1pc2_A Mitochondria fission pr 98.8 4.9E-08 1.7E-12 77.5 12.3 109 181-310 7-120 (152)
207 1klx_A Cysteine rich protein B 98.8 1.6E-07 5.4E-12 74.2 14.8 117 185-345 8-128 (138)
208 1pc2_A Mitochondria fission pr 98.8 7.1E-08 2.4E-12 76.5 12.5 104 138-263 12-117 (152)
209 4e6h_A MRNA 3'-END-processing 98.8 3.2E-07 1.1E-11 91.4 19.1 176 116-326 325-535 (679)
210 3u64_A Protein TP_0956; tetrat 98.7 2.8E-07 9.5E-12 80.8 15.3 178 140-346 48-272 (301)
211 3qww_A SET and MYND domain-con 98.7 3.3E-08 1.1E-12 93.3 10.2 99 186-298 312-424 (433)
212 3qwp_A SET and MYND domain-con 98.7 2.8E-08 9.6E-13 93.9 9.3 111 135-265 298-427 (429)
213 3bee_A Putative YFRE protein; 98.7 1.4E-07 4.7E-12 69.1 10.8 76 154-251 2-77 (93)
214 3qwp_A SET and MYND domain-con 98.7 5.7E-08 1.9E-12 91.8 11.1 107 188-308 303-426 (429)
215 3qww_A SET and MYND domain-con 98.7 7E-08 2.4E-12 91.1 11.3 98 137-254 311-424 (433)
216 3bee_A Putative YFRE protein; 98.7 1.2E-07 4.2E-12 69.3 9.6 72 202-294 2-76 (93)
217 2v5f_A Prolyl 4-hydroxylase su 98.7 3.7E-07 1.3E-11 68.2 11.9 81 205-306 4-91 (104)
218 2v5f_A Prolyl 4-hydroxylase su 98.6 4.5E-07 1.5E-11 67.7 11.6 78 157-259 4-88 (104)
219 2uy1_A Cleavage stimulation fa 98.1 0.00021 7.3E-09 68.5 20.0 145 140-317 195-376 (493)
220 1nzn_A CGI-135 protein, fissio 98.1 4.6E-05 1.6E-09 58.2 11.8 104 138-263 15-120 (126)
221 1nzn_A CGI-135 protein, fissio 98.1 4.8E-05 1.6E-09 58.1 11.6 103 187-307 16-120 (126)
222 4h7y_A Dual specificity protei 97.7 0.00057 2E-08 53.4 11.6 127 152-309 7-141 (161)
223 2uy1_A Cleavage stimulation fa 97.6 0.0015 5.2E-08 62.6 15.9 177 92-310 206-399 (493)
224 3ffl_A Anaphase-promoting comp 97.6 0.00036 1.2E-08 55.6 8.7 117 160-305 22-165 (167)
225 3o48_A Mitochondria fission 1 97.5 0.003 1E-07 48.3 12.7 104 138-264 21-125 (134)
226 3o48_A Mitochondria fission 1 97.4 0.0039 1.3E-07 47.7 12.7 108 183-309 18-126 (134)
227 1y8m_A FIS1; mitochondria, unk 97.4 0.006 2.1E-07 47.2 13.1 106 184-308 18-124 (144)
228 4g26_A Pentatricopeptide repea 97.3 0.023 7.7E-07 54.5 20.2 156 111-303 37-218 (501)
229 4g26_A Pentatricopeptide repea 97.3 0.021 7.2E-07 54.7 20.0 157 133-317 35-197 (501)
230 1y8m_A FIS1; mitochondria, unk 97.3 0.0055 1.9E-07 47.4 12.5 101 139-262 21-122 (144)
231 3ffl_A Anaphase-promoting comp 97.1 0.0024 8.3E-08 50.9 8.9 101 135-261 31-165 (167)
232 4h7y_A Dual specificity protei 96.8 0.0052 1.8E-07 48.0 7.7 100 94-208 8-130 (161)
233 2ff4_A Probable regulatory pro 96.3 0.18 6.1E-06 46.5 16.8 73 159-249 172-244 (388)
234 1ya0_A SMG-7 transcript varian 96.3 0.029 1E-06 53.4 11.3 80 160-264 154-233 (497)
235 4gns_B Protein CSD3, chitin bi 95.9 0.13 4.6E-06 51.3 14.1 117 188-316 265-392 (754)
236 1ya0_A SMG-7 transcript varian 95.5 0.097 3.3E-06 49.8 11.0 81 207-308 153-233 (497)
237 4gns_B Protein CSD3, chitin bi 95.3 0.18 6.1E-06 50.4 12.7 113 140-287 265-397 (754)
238 3mkq_A Coatomer beta'-subunit; 95.3 0.13 4.6E-06 51.6 12.1 89 188-286 668-761 (814)
239 1zbp_A Hypothetical protein VP 95.2 0.71 2.4E-05 39.8 14.6 119 134-295 7-134 (273)
240 3kae_A CDC27, possible protein 94.9 0.67 2.3E-05 36.9 12.2 169 97-294 31-241 (242)
241 3txn_A 26S proteasome regulato 94.4 0.49 1.7E-05 43.5 12.3 161 100-290 20-210 (394)
242 3mkq_B Coatomer subunit alpha; 94.3 1.7 5.7E-05 35.0 14.1 97 137-286 18-114 (177)
243 2w2u_A Hypothetical P60 katani 93.7 0.22 7.7E-06 34.7 6.6 45 187-250 15-59 (83)
244 2v6y_A AAA family ATPase, P60 93.2 0.29 9.8E-06 34.1 6.5 45 188-251 8-52 (83)
245 1wfd_A Hypothetical protein 15 93.1 0.52 1.8E-05 33.6 7.9 48 185-251 9-56 (93)
246 3mkq_A Coatomer beta'-subunit; 92.8 0.7 2.4E-05 46.3 11.4 124 136-310 664-798 (814)
247 2ff4_A Probable regulatory pro 92.3 2.3 7.7E-05 39.0 13.3 81 188-289 131-233 (388)
248 3kae_A CDC27, possible protein 91.8 3.2 0.00011 33.1 11.4 117 138-297 16-150 (242)
249 4a5x_A MITD1, MIT domain-conta 91.2 2.3 7.9E-05 29.7 9.3 28 223-250 29-56 (86)
250 2v6x_A Vacuolar protein sortin 90.4 1.4 4.9E-05 30.6 7.6 45 187-250 9-53 (85)
251 4b4t_S RPN3, 26S proteasome re 89.9 0.4 1.4E-05 45.5 5.7 137 137-310 149-326 (523)
252 1zbp_A Hypothetical protein VP 89.8 1.6 5.5E-05 37.6 8.8 57 186-253 11-67 (273)
253 2cpt_A SKD1 protein, vacuolar 89.7 2.5 8.4E-05 31.5 8.8 47 187-252 14-60 (117)
254 4b4t_R RPN7, 26S proteasome re 89.4 1.5 5.1E-05 40.8 9.2 104 155-291 128-238 (429)
255 3spa_A Mtrpol, DNA-directed RN 88.4 17 0.0006 37.6 16.4 99 158-291 127-231 (1134)
256 3txn_A 26S proteasome regulato 88.3 4.3 0.00015 37.2 11.2 176 116-317 11-203 (394)
257 2crb_A Nuclear receptor bindin 88.2 2.8 9.7E-05 29.3 7.5 43 208-255 17-59 (97)
258 4fhn_B Nucleoporin NUP120; pro 86.7 9.8 0.00034 40.1 14.4 33 95-128 838-870 (1139)
259 4b4t_S RPN3, 26S proteasome re 85.6 12 0.0004 35.5 12.7 96 93-205 175-303 (523)
260 4fhn_B Nucleoporin NUP120; pro 84.1 12 0.0004 39.5 13.4 104 198-315 834-958 (1139)
261 2dl1_A Spartin; SPG20, MIT, st 83.9 3.4 0.00012 30.4 6.4 43 188-249 19-61 (116)
262 4b4t_P 26S proteasome regulato 82.1 9.6 0.00033 35.5 10.7 101 158-290 137-247 (445)
263 3mkq_B Coatomer subunit alpha; 81.7 18 0.00063 28.9 13.4 40 188-243 21-60 (177)
264 3spa_A Mtrpol, DNA-directed RN 77.0 34 0.0012 35.5 13.2 84 133-234 136-225 (1134)
265 1qsa_A Protein (soluble lytic 75.1 21 0.00071 34.8 10.9 80 188-289 268-347 (618)
266 2wpv_A GET4, UPF0363 protein Y 73.9 46 0.0016 29.2 13.7 36 232-267 115-150 (312)
267 3iqu_A 14-3-3 protein sigma; s 72.5 42 0.0014 28.1 13.8 135 158-306 8-186 (236)
268 2w2u_A Hypothetical P60 katani 69.8 10 0.00035 26.1 5.4 44 113-156 13-58 (83)
269 2v6y_A AAA family ATPase, P60 68.7 12 0.00042 25.6 5.6 41 116-156 8-50 (83)
270 4gq2_M Nucleoporin NUP120; bet 68.1 65 0.0022 33.1 13.3 87 196-296 830-933 (950)
271 3eab_A Spastin; spastin, MIT, 65.4 5.8 0.0002 27.7 3.3 46 188-249 13-58 (89)
272 1wfd_A Hypothetical protein 15 65.3 27 0.00092 24.5 7.0 44 114-157 10-55 (93)
273 3uzd_A 14-3-3 protein gamma; s 64.3 65 0.0022 27.2 14.5 135 159-307 5-185 (248)
274 4b4t_R RPN7, 26S proteasome re 64.2 24 0.0008 32.6 8.4 87 186-290 111-197 (429)
275 2cpt_A SKD1 protein, vacuolar 60.5 43 0.0015 24.6 7.6 44 116-159 15-60 (117)
276 4b4t_P 26S proteasome regulato 55.8 1.3E+02 0.0043 27.8 12.9 89 134-240 147-248 (445)
277 1o9d_A 14-3-3-like protein C; 54.5 1E+02 0.0034 26.2 14.7 142 159-314 9-197 (260)
278 2rpa_A Katanin P60 ATPase-cont 54.1 24 0.00082 23.9 4.8 36 209-248 15-50 (78)
279 3ax2_A Mitochondrial import re 54.1 38 0.0013 22.6 5.7 35 162-210 21-55 (73)
280 4a5x_A MITD1, MIT domain-conta 53.1 53 0.0018 22.6 6.9 34 114-152 11-44 (86)
281 2br9_A 14-3-3E, 14-3-3 protein 51.9 1E+02 0.0036 25.7 15.9 135 159-307 6-184 (234)
282 2v6x_A Vacuolar protein sortin 48.2 62 0.0021 22.0 7.0 32 116-152 10-41 (85)
283 1wy6_A Hypothetical protein ST 46.4 80 0.0027 24.3 7.0 51 223-290 104-154 (172)
284 2dl1_A Spartin; SPG20, MIT, st 46.3 17 0.00056 26.8 3.2 44 112-155 15-60 (116)
285 2ymb_A MITD1, MIT domain-conta 45.3 4.5 0.00015 34.5 0.0 44 188-250 20-63 (257)
286 3t5x_A PCI domain-containing p 45.1 51 0.0017 26.8 6.5 35 158-206 14-48 (203)
287 4gq2_M Nucleoporin NUP120; bet 43.6 1.2E+02 0.004 31.2 10.3 79 149-252 831-933 (950)
288 3lpz_A GET4 (YOR164C homolog); 42.4 1.8E+02 0.0062 25.7 12.9 123 134-284 22-159 (336)
289 1qsa_A Protein (soluble lytic 41.9 2.5E+02 0.0085 27.2 14.5 106 188-315 230-339 (618)
290 3re2_A Predicted protein; meni 41.6 82 0.0028 28.3 7.3 66 156-237 253-323 (472)
291 2ijq_A Hypothetical protein; s 39.9 1.3E+02 0.0045 23.4 8.8 65 162-242 36-107 (161)
292 3esl_A Checkpoint serine/threo 39.7 1.5E+02 0.0052 24.0 12.2 68 203-292 77-146 (202)
293 2crb_A Nuclear receptor bindin 39.5 53 0.0018 23.0 4.7 27 160-200 17-43 (97)
294 4ady_A RPN2, 26S proteasome re 39.1 1.5E+02 0.0053 30.3 10.0 170 100-310 377-575 (963)
295 3t5x_A PCI domain-containing p 38.1 68 0.0023 26.0 6.2 35 251-295 14-48 (203)
296 1wy6_A Hypothetical protein ST 38.1 1.4E+02 0.0046 23.0 7.3 76 138-236 75-151 (172)
297 3re2_A Predicted protein; meni 37.9 65 0.0022 28.9 6.1 40 278-317 274-318 (472)
298 3esl_A Checkpoint serine/threo 37.6 1.6E+02 0.0056 23.8 9.0 49 188-247 95-145 (202)
299 1om2_A Protein (mitochondrial 37.1 52 0.0018 23.2 4.5 33 162-208 24-56 (95)
300 3u84_A Menin; MLL, JUND, ledgf 36.4 62 0.0021 29.6 5.9 40 278-317 296-340 (550)
301 3u84_A Menin; MLL, JUND, ledgf 33.2 1.3E+02 0.0043 27.7 7.3 42 191-236 298-344 (550)
302 3ax2_A Mitochondrial import re 32.3 1.1E+02 0.0038 20.3 5.8 33 210-253 21-53 (73)
303 2ijq_A Hypothetical protein; s 31.8 1.8E+02 0.0061 22.6 7.3 61 209-290 35-104 (161)
304 4gq4_A Menin; tumor suppressor 30.9 1.5E+02 0.005 27.2 7.3 69 156-242 260-335 (489)
305 2zan_A Vacuolar protein sortin 29.6 11 0.00039 35.0 0.0 41 188-247 8-48 (444)
306 3qtm_A Uncharacterized protein 27.0 3E+02 0.01 23.5 14.4 101 209-313 25-137 (346)
307 2wb7_A PT26-6P; extra chromoso 26.0 2.3E+02 0.0077 26.6 7.9 19 223-241 500-518 (526)
308 2cfu_A SDSA1; SDS-hydrolase, l 25.1 1.6E+02 0.0056 28.7 7.4 51 206-267 449-499 (658)
309 3t5v_B Nuclear mRNA export pro 24.4 1.7E+02 0.0059 27.1 7.0 83 138-238 140-248 (455)
310 4a1g_A Mitotic checkpoint seri 24.0 1.4E+02 0.0048 23.0 5.4 46 238-293 86-133 (152)
311 2npm_A 14-3-3 domain containin 23.8 3.3E+02 0.011 23.0 18.6 135 159-307 29-209 (260)
312 2wb7_A PT26-6P; extra chromoso 23.7 62 0.0021 30.2 3.7 40 228-267 450-490 (526)
313 4aez_C MAD3, mitotic spindle c 23.5 2.8E+02 0.0096 22.8 7.4 47 190-247 132-180 (223)
314 2wpv_A GET4, UPF0363 protein Y 23.4 3.7E+02 0.013 23.4 17.1 153 112-288 45-215 (312)
315 3s6n_M SurviVal motor neuron p 23.4 82 0.0028 17.5 2.7 18 230-247 15-32 (37)
316 2cfu_A SDSA1; SDS-hydrolase, l 23.3 1.7E+02 0.0059 28.5 7.2 52 251-312 449-500 (658)
317 4ady_A RPN2, 26S proteasome re 22.9 6.3E+02 0.022 25.9 15.3 179 93-308 64-275 (963)
318 2rpa_A Katanin P60 ATPase-cont 22.7 87 0.003 21.1 3.4 27 161-201 15-41 (78)
319 3ubw_A 14-3-3E, 14-3-3 protein 22.3 3.6E+02 0.012 22.8 19.6 137 157-307 30-210 (261)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1.8e-26 Score=199.37 Aligned_cols=186 Identities=12% Similarity=0.133 Sum_probs=166.5
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
|.++.+++.+|.++. ..|++++|+..|++++..+|. .+...|++++|+.+|+++++++|+++.+++++|
T Consensus 2 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLY-ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 678899999999995 999999999999999999987 356679999999999999999999999999999
Q ss_pred HHHHHh-----------cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 166 LVLQES-----------ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 166 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
.++..+ |+ +++|+..|+++++++|+++.+++++|.++.. .|++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~---- 138 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGY--------------LEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAE---- 138 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHH--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred HHHHHhhhhhhhhcccccC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHH----
Confidence 999999 88 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
..|+++++++ +++.+++++|.+|..+|++ ++|+..|+++++++|+++.++.++|.++...|+..++
T Consensus 139 ---~~~~~al~~~-~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 139 ---ASLKQALALE-DTPEIRSALAELYLSMGRL----------DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp ---HHHHHHHHHC-CCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHhcc-cchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 7899999999 9999999999999999996 9999999999999999999999999999999988766
Q ss_pred hcCc
Q 017806 315 TGGT 318 (365)
Q Consensus 315 ~~~~ 318 (365)
...+
T Consensus 205 ~~~~ 208 (217)
T 2pl2_A 205 ARAA 208 (217)
T ss_dssp ----
T ss_pred HHHH
Confidence 6543
No 2
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=2e-26 Score=215.68 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=168.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhh-HHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRI-LTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~-~~~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|++..+++.+|.++ ...|++++|+..|++++.++|. .+...|+ +++|+.+|+++++++|++..+
T Consensus 90 i~~~p~~~~a~~~lg~~~-~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVL-QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCChhhHHHHHHHHHHH-HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 467888999999999999 5999999999999999999987 3445585 999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|+++|.++..+|+ +++|+.+|+++++++|++..+|+++|.++.. +|++++|+ .+|
T Consensus 169 ~~~~g~~~~~~g~--------------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl-------~~~ 223 (382)
T 2h6f_A 169 WHHRRVLVEWLRD--------------PSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNEL-------QYV 223 (382)
T ss_dssp HHHHHHHHHHHTC--------------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHH
T ss_pred HHHHHHHHHHccC--------------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHH-------HHH
Confidence 9999999999999 9999999999999999999999999999999 99999999 889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+++++++|++..+|+++|.++.. .|..+.|. ++.++.+|++++.++|++..+|+++|.++...|
T Consensus 224 ~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~-----~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 224 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV-----LEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH-----HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 99999999999999999999999 55541111 223369999999999999999999999999887
No 3
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=1.1e-23 Score=176.26 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=144.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+.+|+++++++|+++.++..+|.++..+|+ +++|+..+++++...|++..++..+|.
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--------------PNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 455678888888888999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .++++.|+ ..+.+++.++|++..++..+|.+|..+|++ ++|+..|+++++++|++
T Consensus 82 ~~~~----~~~~~~a~-------~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 82 ANFM----IDEKQAAI-------DALQRAIALNTVYADAYYKLGLVYDSMGEH----------DKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTC
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCccchHHHHHHHHHHHHhCCc----------hhHHHHHHHHHHhcchh
Confidence 9999 99999999 778888999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHH
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
+.+++++|.++..+|+. ..|..+|.++.+++|.+..|.
T Consensus 141 ~~~~~~lg~~~~~~g~~-------------------~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLR-------------------DEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp HHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHTTHHHHHHC
T ss_pred hhHHHHHHHHHHHCCCH-------------------HHHHHHHHHHHhCCccCHHHH
Confidence 99999999999999865 456667788888888776553
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=4.4e-24 Score=199.77 Aligned_cols=233 Identities=18% Similarity=0.164 Sum_probs=144.0
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
..+|+++.+++.+|.++ ...|++++|+..|++++..+|. .+...|++++|+.+|+++++.+|++..+|.
T Consensus 95 ~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (388)
T 1w3b_A 95 RLKPDFIDGYINLAAAL-VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173 (388)
T ss_dssp HHCTTCHHHHHHHHHHH-HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44555566666666666 3666666666666666655554 122235555555555555555555555555
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-------- 234 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~-------- 234 (365)
++|.++...|+ +++|+..|+++++++|++..++.++|.++.. .|++++|+..|+
T Consensus 174 ~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 174 NLGCVFNAQGE--------------IWLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcC
Confidence 55555555555 5555555555555555555555555555544 555554442211
Q ss_pred -------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 235 -------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 235 -------------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
.|+..|+++++++|+++.+|+++|.++...|++ ++|+.+|+++++++|+++
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV----------AEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH----------HHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcccH
Confidence 122667777777777777777777777777775 889999999999889888
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch--H-------------HHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE--L-------------YSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 296 ~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~--~-------------~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
.++.++|.++...|+..++...+..++...|.. . +..+..+|.++..++|++......+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 888999999988888888877766666665542 1 3445555556666666554444333
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=5.5e-24 Score=199.12 Aligned_cols=191 Identities=23% Similarity=0.198 Sum_probs=138.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.++.+++.+|.++ ...|++++|+..|++++..+|. ++...|++++|+..|+++++.+|++..++
T Consensus 60 ~~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVY-KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHH
T ss_pred HhcCCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 456777888888888888 4888888888888888877765 24455788888888888888888888888
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++..+|+ +++|+.+|+++++++|++..+|+++|.++.. .|++++|+ ..|+
T Consensus 139 ~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~ 193 (388)
T 1w3b_A 139 SDLGNLLKALGR--------------LEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAI-------HHFE 193 (388)
T ss_dssp HHHHHHHHTTSC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHH-------HHHH
T ss_pred HHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 888888888888 9999999999999999999999999999988 99999988 5566
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
++++++|++..++.++|.++...|++ ++|+..|++++.++|+++.++.++|.++...|+..++...+
T Consensus 194 ~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 194 KAVTLDPNFLDAYINLGNVLKEARIF----------DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCT----------THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666666665 44444444444444444444444444444444444444433
No 6
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=3e-24 Score=199.16 Aligned_cols=205 Identities=17% Similarity=0.170 Sum_probs=161.3
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
+...++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|+++++++|++..++..+|.+
T Consensus 64 ~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRL-KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445666677663 677777777777777766654 23445677777777777777777777777777777
Q ss_pred HHHhcCcccc--------------------C----------CCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 017806 168 LQESADNVSL--------------------D----------STSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIA 215 (365)
Q Consensus 168 ~~~~~~~~~a--------------------~----------~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 215 (365)
+...|++.+| . +......|++++|+.+|++++.++|+ ++.+++++|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 7776665544 1 34555567799999999999999999 89999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+.. .|++++|+ ..|+++++.+|+++.+|+++|.++...|++ ++|+..|+++++++|+++
T Consensus 223 ~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 223 FHL----SGEFNRAI-------DAFNAALTVRPEDYSLWNRLGATLANGDRS----------EEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCH
T ss_pred HHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCch
Confidence 999 99999999 779999999999999999999999999996 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCcCCCCCC
Q 017806 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREV 324 (365)
Q Consensus 296 ~~~~~lg~~~~~~g~~~~a~~~~~~~~~~ 324 (365)
.++.++|.++..+|+..++...+..++..
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999887776655444443
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=9.3e-24 Score=197.61 Aligned_cols=222 Identities=11% Similarity=0.024 Sum_probs=194.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhc-HHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQ-NNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~-~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|++..+|+.+|.++ ...|+ +++|+.+|++++.++|. .+...|++++|+.+|+++|+++|++..+
T Consensus 124 l~l~P~~~~a~~~~g~~l-~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a 202 (382)
T 2h6f_A 124 IELNAANYTVWHFRRVLL-KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202 (382)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH
T ss_pred HHhCccCHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHH
Confidence 688999999999999999 59997 99999999999999987 3455699999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT-KEAEELWKQATKN 239 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~-~~A~~~~~~A~~~ 239 (365)
|+++|.++..+|+ +++|+.+|+++|+++|++..+|+++|.++.. ++.+ ++|+ ++.++.+
T Consensus 203 ~~~lg~~~~~~g~--------------~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~----l~~~~~eA~--~~~el~~ 262 (382)
T 2h6f_A 203 WQHRQWVIQEFKL--------------WDNELQYVDQLLKEDVRNNSVWNQRYFVISN----TTGYNDRAV--LEREVQY 262 (382)
T ss_dssp HHHHHHHHHHHTC--------------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCSCSHHH--HHHHHHH
T ss_pred HHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCcchHHH--HHHHHHH
Confidence 9999999999999 9999999999999999999999999999988 7666 7775 4455588
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhc--CcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELS--AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
|++++.++|++..+|+++|.++...| ++ ++|+..++++ ..+|++..++..||.++..+|+...
T Consensus 263 ~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~----------~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~---- 327 (382)
T 2h6f_A 263 TLEMIKLVPHNESAWNYLKGILQDRGLSKY----------PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC---- 327 (382)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTTTCGGGC----------HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHccCccch----------HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc----
Confidence 99999999999999999999999988 45 9999999998 9999999999999999999874310
Q ss_pred cCCCCCCCcchHHHHHHHHHHHH-HhcCccHHHHHHHHH
Q 017806 318 TVNPREVSPNELYSQSAIYIAAA-HALKPSYSVYSSALR 355 (365)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~a-~~~~~~~~~~~~al~ 355 (365)
....+.+..+..+|.++ ..++|....++.-++
T Consensus 328 ------~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 328 ------DNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 00112346788888998 899998887766543
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=6.8e-22 Score=181.41 Aligned_cols=224 Identities=14% Similarity=0.059 Sum_probs=170.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh---h----------------------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE---E----------------------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~---~----------------------~~~~~~~~~~A~~~ 146 (365)
+..+|.++.+++.+|.++. ..|++++|+..|++++..+| . .+...|++++|+.+
T Consensus 64 ~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 64 IALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5668889999999999994 99999999999999999988 3 34456999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
|+++++.+|.++.++..+|.++...|+ +++|+..|+++++++|+++.+++.+|.++.. .|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~ 204 (359)
T 3ieg_A 143 LDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDH 204 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Confidence 999999999999999999999999999 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHH------------HHHHHHHhcCcchhHH----------------------
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNN------------WGLALQELSAIVPARE---------------------- 272 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~------------lg~~~~~~~~~~~~~~---------------------- 272 (365)
++|+ ..|+++++.+|++..++.. +|.++...|+++.|..
T Consensus 205 ~~A~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 205 ELSL-------SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359)
T ss_dssp HHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 9999 4455555556665554432 2555555555411111
Q ss_pred ------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCcc
Q 017806 273 ------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (365)
Q Consensus 273 ------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 346 (365)
..|++++|+..|+++++.+|+++.++.++|.++...|+ +..+..+|.++..++|+
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM-------------------YDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhcCCC
Confidence 11223555555555555555555555555555555553 46677788888888898
Q ss_pred HHHHHHHHHhhhhh
Q 017806 347 YSVYSSALRLVRSM 360 (365)
Q Consensus 347 ~~~~~~al~~~~~~ 360 (365)
+......+..+...
T Consensus 339 ~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 339 DQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 88777777665543
No 9
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=2.6e-23 Score=209.04 Aligned_cols=165 Identities=28% Similarity=0.304 Sum_probs=146.2
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
...|+++++++++|.++. .+|++++|+.+|+++++++|++..+|++||.++..+|
T Consensus 3 gs~P~~a~al~nLG~~~~-------------------------~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g 57 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKR-------------------------EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 57 (723)
T ss_dssp ---CHHHHHHHHHHHHHH-------------------------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHH-------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 357889999999999883 4566778888888889999999999999999999999
Q ss_pred CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
+ +++|+.+|+++++++|+++.+|++||.++.. +|++++|+ +.|+++++++|+++.
T Consensus 58 ~--------------~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~----~g~~~~A~-------~~~~kAl~l~P~~~~ 112 (723)
T 4gyw_A 58 K--------------LQEALMHYKEAIRISPTFADAYSNMGNTLKE----MQDVQGAL-------QCYTRAIQINPAFAD 112 (723)
T ss_dssp C--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHH
T ss_pred C--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHH
Confidence 9 9999999999999999999999999999999 99999999 778999999999999
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+|+++|.+|..+|++ ++|+.+|+++++++|+++.++.+||.++..+|+...+...
T Consensus 113 a~~~Lg~~~~~~g~~----------~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 113 AHSNLASIHKDSGNI----------PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 999999999999996 9999999999999999999999999999999987655443
No 10
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=3.3e-22 Score=173.89 Aligned_cols=209 Identities=20% Similarity=0.160 Sum_probs=170.8
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
.+.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|+++++.+|.+..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGS-EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888999995 999999999999999998876 35566999999999999999999999999999999
Q ss_pred HHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 168 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
+...|+ +++|+..|+++++++|.+..++..+|.++.. .|++++|+ ..++++++.+
T Consensus 101 ~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~ 155 (243)
T 2q7f_A 101 YVVKEM--------------YKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLAL-------PYLQRAVELN 155 (243)
T ss_dssp HHHTTC--------------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHH-------HHHHHHHHHC
T ss_pred HHHhcc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHH-------HHHHHHHHhC
Confidence 999999 9999999999999999999999999999999 99999999 7789999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
|++..++..+|.++...|++ ++|+..|++++..+|+++.++..+|.++...|+.
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------------- 209 (243)
T 2q7f_A 156 ENDTEARFQFGMCLANEGML----------DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR---------------- 209 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCC----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT----------------
T ss_pred CccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCH----------------
Confidence 99999999999999999997 9999999999999999999999999999999865
Q ss_pred hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhhh
Q 017806 328 ELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMV 361 (365)
Q Consensus 328 ~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~~ 361 (365)
..+..++.++..+.|++......+..+....
T Consensus 210 ---~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 210 ---EKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp ---THHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 4466777889999999988888887766543
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=2.7e-22 Score=173.10 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=142.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...|++++|+..|+++++.+|+++.+++++|.++...|+ +++|+..|+++++++|+++.+++++
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL--------------VNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34567999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 213 AIAISDRAKMR-----------GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 213 g~~~~~~~~~~-----------g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
|.++.. . |++++|+ ..|+++++++|+++.+|+++|.++..+|++ ++|+
T Consensus 80 g~~~~~----~~~~~~~~~~~~g~~~~A~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~----------~~A~ 138 (217)
T 2pl2_A 80 SEAYVA----LYRQAEDRERGKGYLEQAL-------SVLKDAERVNPRYAPLHLQRGLVYALLGER----------DKAE 138 (217)
T ss_dssp HHHHHH----HHHTCSSHHHHHHHHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHH----hhhhhhhhcccccCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHcCCh----------HHHH
Confidence 999999 8 8888888 889999999999999999999999999996 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
..|+++++++ +++.+++++|.++...|+..++...+..++
T Consensus 139 ~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 139 ASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 999999999999999997765544433333
No 12
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=1.7e-22 Score=175.06 Aligned_cols=191 Identities=17% Similarity=0.252 Sum_probs=162.4
Q ss_pred hhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+..|++++|+.+|+++++++| .+..+++++|.++..+|+ +++|+.+|+++++++|++..+++.+|
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------------YKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------------HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 456778888888888999998 899999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-------QALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++.. +|++++|+ ..|+++++++|+++ .+|+++|.++...|++ ++|+..|++
T Consensus 84 ~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~ 142 (228)
T 4i17_A 84 AAYRD----MKNNQEYI-------ATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI----------EKAEENYKH 142 (228)
T ss_dssp HHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHH----cccHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH----------HHHHHHHHH
Confidence 99999 99999999 88999999999999 6699999999999986 999999999
Q ss_pred HHHhCCC--CHHHHHHHHHHHHHhhhhhhhhcCcCCCCC--------CCcchHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 287 AIQLQFD--FHRAIYNLGTVLYGLAEDTLRTGGTVNPRE--------VSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 287 al~~~p~--~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
+++++|+ ++.+++++|.++...|+............. ......|..+..+|.++..++|++......+..
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 9999999 999999999999999977222111100000 001134688999999999999999888887776
Q ss_pred hhhh
Q 017806 357 VRSM 360 (365)
Q Consensus 357 ~~~~ 360 (365)
++..
T Consensus 223 i~~~ 226 (228)
T 4i17_A 223 VKAM 226 (228)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.6e-22 Score=181.41 Aligned_cols=201 Identities=14% Similarity=0.048 Sum_probs=176.7
Q ss_pred hccCCCchHHHHhcCCChhHhhh-cHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAE-QNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g-~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|.++.+++.+|.++. ..| ++++|+.+|++++..+|. .+...|++++|+.+|+++++.+|.+..+
T Consensus 83 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 161 (330)
T 3hym_B 83 VDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161 (330)
T ss_dssp HHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHH
T ss_pred HHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHH
Confidence 5678888899999999984 888 899999999999988876 3456689999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+..+|.++...|+ +++|+.+|+++++++|+++.+++.+|.++.. .|++++|+ ..|
T Consensus 162 ~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~ 216 (330)
T 3hym_B 162 MLYIGLEYGLTNN--------------SKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAE-------KWF 216 (330)
T ss_dssp HHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHH
T ss_pred HHHHHHHHHHHhh--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHH-------HHH
Confidence 9999999999999 9999999999999999999999999999999 99999999 556
Q ss_pred HHHHhcC---------CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 241 EKAVQLN---------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 241 ~~al~~~---------p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
++++... |..+.++.++|.++...|++ ++|+.+|+++++++|+++.++.++|.++...|+.
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY----------AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH
Confidence 6666654 67789999999999999996 9999999999999999999999999999999988
Q ss_pred hhhhcCcCCCCCCCcch
Q 017806 312 TLRTGGTVNPREVSPNE 328 (365)
Q Consensus 312 ~~a~~~~~~~~~~~~~~ 328 (365)
.++...+..++...|.+
T Consensus 287 ~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDD 303 (330)
T ss_dssp HHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHHHHccCCCc
Confidence 77766666666666554
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=4.5e-23 Score=190.82 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
|++++|+.+|++++.++|+ ++.+++++|.++.. .|++++|+ ..|++++..+|+++.+|+++|.++..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEYDKAV-------DCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 5599999999999999999 89999999999999 99999999 77999999999999999999999999
Q ss_pred hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc-------------chHH
Q 017806 264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP-------------NELY 330 (365)
Q Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~-------------~~~~ 330 (365)
.|++ ++|+..|++++.++|+++.++.++|.++...|+..++...+..++...| ...|
T Consensus 264 ~g~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 264 GNQS----------EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp TTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred cCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 9996 9999999999999999999999999999999999888776655554433 3456
Q ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhhhhhhcc
Q 017806 331 SQSAIYIAAAHALKPSYSVYSSALRLVRSMVSI 363 (365)
Q Consensus 331 ~~a~~~~~~a~~~~~~~~~~~~al~~~~~~~~~ 363 (365)
......+...+..+.+...+.+++..++..+++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 366 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADARDLSTLLTMFGL 366 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCC
Confidence 667777788888877888888888877776654
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3e-22 Score=175.47 Aligned_cols=205 Identities=18% Similarity=0.148 Sum_probs=179.4
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCC-------HHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPED-------YDA 160 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 160 (365)
..+.+++.+|.+++ ..|++++|+.+|++++..+.. ++...|++++|+.+|.++++++|.+ +.+
T Consensus 3 ~~a~~~~~~g~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFY-KARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678999999995 999999999999999988721 4566799999999999999999877 799
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--------------------------LCPTLHDAFYNWAI 214 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~ 214 (365)
+..+|.++...|+ +++|+.+|++++. .+|.+..++..+|.
T Consensus 82 ~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 82 FARIGNAYHKLGD--------------LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc--------------HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999999999 7777777777776 77888899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .|++++|+ ..|+++++.+|+++.+++++|.++...|++ ++|+.+|+++++.+|++
T Consensus 148 ~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 148 EYFT----KSDWPNAV-------KAYTEMIKRAPEDARGYSNRAAALAKLMSF----------PEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTC
T ss_pred HHHH----hcCHHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCHHH
Confidence 9999 99999999 779999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcC------ccHHHHHHHHHh
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK------PSYSVYSSALRL 356 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~------~~~~~~~~al~~ 356 (365)
+.++..+|.++...|+. ..+..++.++..+. |.+......+..
T Consensus 207 ~~~~~~l~~~~~~~g~~-------------------~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEY-------------------ASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhH-------------------HHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 99999999999999966 44666667777777 777766666554
No 16
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=2e-22 Score=194.33 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=177.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcH-HHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQN-NAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~-~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
....|.++.+++.+|.++. ..|++ ++|+.+|++++.++|. .+...|++++|+.+|+++++++|+ ..+
T Consensus 95 ~~~~~~~a~~~~~lg~~~~-~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 172 (474)
T 4abn_A 95 LGSAQVEAQALMLKGKALN-VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVS 172 (474)
T ss_dssp HTTCCCCHHHHHHHHHHHT-SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHH
T ss_pred hccCchhHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHH
Confidence 4667889999999999995 99999 9999999999999987 456679999999999999999999 799
Q ss_pred HHHHHHHHHHh---------cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc--------
Q 017806 161 LYNWALVLQES---------ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-------- 223 (365)
Q Consensus 161 ~~~lg~~~~~~---------~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-------- 223 (365)
+.++|.++..+ |+ +++|+.+|+++++++|+++.+|+++|.++.. .
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~ 234 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRH--------------VMDSVRQAKLAVQMDVLDGRSWYILGNAYLS----LYFNTGQNP 234 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHH--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHTTCCH
T ss_pred HHHHHHHHHHhccCChhhhhhh--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHhhcccc
Confidence 99999999998 77 9999999999999999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
|++++|+ ..|+++++++| +++.+|+++|.+|..+|++ ++|+..|+++++++|+++.++.+
T Consensus 235 g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~a~~~ 297 (474)
T 4abn_A 235 KISQQAL-------SAYAQAEKVDRKASSNPDLHLNRATLHKYEESY----------GEALEGFSQAAALDPAWPEPQQR 297 (474)
T ss_dssp HHHHHHH-------HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHH-------HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 8888888 88999999999 9999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCc
Q 017806 301 LGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 301 lg~~~~~~g~~~~a~~~~ 318 (365)
++.++..+|+...+...+
T Consensus 298 l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999888777644
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.6e-22 Score=181.47 Aligned_cols=230 Identities=14% Similarity=0.076 Sum_probs=183.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhh-hHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQR-ILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~-~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|.+..++..++.++. ..|++++|+.++++++..+|. .+...| ++++|+.+|+++++.+|.+..+
T Consensus 49 l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 127 (330)
T 3hym_B 49 MEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127 (330)
T ss_dssp HHHCTTCTTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHH
T ss_pred HHcCCCChhhHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHH
Confidence 5677888888888888884 888899999988888888765 244457 8888999999998888888888
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|..+|.++...|+ +++|+.+|++++++.|++..++..+|.++.. .|++++|+ ..|
T Consensus 128 ~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~ 182 (330)
T 3hym_B 128 WIAYGHSFAVESE--------------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAE-------RFF 182 (330)
T ss_dssp HHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHH-------HHH
T ss_pred HHHHHHHHHHccC--------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHH-------HHH
Confidence 8889998888888 8899999999998888888888888888888 88888888 778
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhhhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ---------FDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~ 311 (365)
+++++.+|+++.+++++|.++...|++ ++|+.+|++++.+. |.++.++.++|.++...|+.
T Consensus 183 ~~al~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 183 SQALSIAPEDPFVMHEVGVVAFQNGEW----------KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 889999999999999999999999886 99999999999886 66778899999999999988
Q ss_pred hhhhcCcCCCCCCCcc--hHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 312 TLRTGGTVNPREVSPN--ELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 312 ~~a~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
.++...+..++...|. ..+......+...+..+.+...+.+++.+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 7777766655554444 334444555455555555555555555443
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=5.8e-22 Score=181.85 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=150.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCC---CCH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNP---EDY 158 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p---~~~ 158 (365)
+..+|.++.+++.+|.++. ..|++++|+..|++++..+|. .+...|++++|+.+|+++++.+| ++.
T Consensus 30 l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 108 (359)
T 3ieg_A 30 VDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK 108 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH
Confidence 5678999999999999995 999999999999999998875 35567999999999999999999 889
Q ss_pred HHHHHH------------HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 159 DALYNW------------ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 159 ~~~~~l------------g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
.++..+ |.++...|+ +++|+.+|+++++.+|.++.++..+|.++.. .|++
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 170 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGAD--------------YTAAITFLDKILEVCVWDAELRELRAECFIK----EGEP 170 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----CCCH
Confidence 988888 688889999 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
++|+ ..++++++.+|+++.+++++|.++...|++ ++|+..|+++++.+|++..+
T Consensus 171 ~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~ 224 (359)
T 3ieg_A 171 RKAI-------SDLKAASKLKSDNTEAFYKISTLYYQLGDH----------ELSLSEVRECLKLDQDHKRC 224 (359)
T ss_dssp HHHH-------HHHHHHHTTCSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCccchHH
Confidence 9999 779999999999999999999999999997 55555555555555544443
No 19
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=3.4e-21 Score=165.17 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=185.4
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYN 163 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (365)
..|.++.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|++++..+|.+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYM-RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 46788899999999995 999999999999999998876 3556699999999999999999999999999
Q ss_pred HHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 164 WALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 164 lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+|.++... |+ +++|+.+|+++++ ..|.+..+++.+|.++.. .|++++|+ ..|
T Consensus 82 l~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~ 136 (225)
T 2vq2_A 82 YGWFLCGRLNR--------------PAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAE-------AYL 136 (225)
T ss_dssp HHHHHHTTTCC--------------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHH-------HHH
T ss_pred HHHHHHHhcCc--------------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence 99999999 99 9999999999999 677789999999999999 99999999 778
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF-DFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
+++++.+|++..++..+|.++...|++ ++|+..|++++..+| ++..++..++.++...|+.
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 198 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQL----------GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA-------- 198 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH--------
Confidence 999999999999999999999999996 999999999999999 9999998888888888754
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 320 NPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
..+..++..+....|++..+...+
T Consensus 199 -----------~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 199 -----------QAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp -----------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhCCCCHHHHHHh
Confidence 456667777777888887776554
No 20
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=1.1e-21 Score=173.87 Aligned_cols=213 Identities=12% Similarity=0.012 Sum_probs=186.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (365)
+..+|.++.+++.+|.++. ..|++++|+..|++++...+. .+...|++++|+.+|+++++.+|.+.
T Consensus 30 l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 30 EAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp HHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence 5778999999999999995 999999999999999994322 34556999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.++..+|.++...|+ +++|+.+|+++++++|.++.+++++|..... .+++++|+ .
T Consensus 109 ~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~ 163 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGN--------------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYY----NKEYVKAD-------S 163 (272)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH----TTCHHHHH-------H
T ss_pred HHHHHHHHHHHHccC--------------HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH----HHHHHHHH-------H
Confidence 999999999999999 9999999999999999999999999955555 66888888 8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcC---cchhHHhhhHHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHH
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSA---IVPAREKQTIVRTAISKFRAAIQLQ---FD-----FHRAIYNLGTVLYG 307 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~~~~~~~~~~~A~~~~~~al~~~---p~-----~~~~~~~lg~~~~~ 307 (365)
.|+++++.+|++..+++.+|.++..+++ + ++|+..|++++++. |+ ...++..+|.++..
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQ----------GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSS----------CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhh----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998 6 88999999999886 54 23688899999998
Q ss_pred hhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
.|+. ..+..++.++..++|++....+.++.+..
T Consensus 234 ~~~~-------------------~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 234 NRDK-------------------VKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp TTCH-------------------HHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cCCH-------------------HHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 8855 56777889999999999998888876654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=1.1e-21 Score=181.84 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=162.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------------hhhhhhhHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------GRSRQRILTFAAKRYANAI 151 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~A~~~~~~al 151 (365)
+..+|.++.+++.+|.++ ...|++++|+.+|++++.+.|. .+...|++++|+.+|++++
T Consensus 126 l~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 126 LELQPNNLKALMALAVSY-TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHH-HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 445666677777777777 3777777777777777776654 2233588999999999999
Q ss_pred HhCCC--CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 152 ERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 152 ~~~p~--~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
+++|. ++.++.++|.++...|+ +++|+.+|+++++++|+++.+|+++|.++.. .|++++|
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A 266 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGE--------------FNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDRSEEA 266 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHH
Confidence 99999 89999999999999999 9999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC------------CHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD------------FHRA 297 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~ 297 (365)
+ ..|+++++++|+++.+++++|.+|..+|++ ++|+.+|+++++++|+ +..+
T Consensus 267 ~-------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 329 (365)
T 4eqf_A 267 V-------EAYTRALEIQPGFIRSRYNLGISCINLGAY----------REAVSNFLTALSLQRKSRNQQQVPHPAISGNI 329 (365)
T ss_dssp H-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHCC------------CHH
T ss_pred H-------HHHHHHHhcCCCchHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccCCCcccchhhhHHHH
Confidence 9 779999999999999999999999999997 9999999999999887 3678
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 017806 298 IYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~ 315 (365)
|.+++.++..+|+.+.+.
T Consensus 330 ~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 330 WAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHcCcHHHHH
Confidence 999999999999776443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=3.1e-22 Score=181.60 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=152.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.++.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+..|+++++.+|.+...+
T Consensus 48 ~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 126 (327)
T 3cv0_A 48 CQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG 126 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-
T ss_pred HHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH
Confidence 3455666666666666663 666666666666666666554 23344666666666666666666665555
Q ss_pred HHHHHHHHHhcCccccC-CC-CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLD-ST-SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~-~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
..+......... .... +. .....|++++|+.+|+++++.+|.+..++..+|.++.. .|++++|+ ..
T Consensus 127 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~ 194 (327)
T 3cv0_A 127 SVNLQADVDIDD-LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL----SNNYDSAA-------AN 194 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHhHHHHHHHH-HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hccHHHHH-------HH
Confidence 554100000000 0000 11 23344559999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
++++++.+|+++.++.++|.++...|++ ++|+..|+++++.+|++..++.++|.++...|+..++...+.
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 195 LRRAVELRPDDAQLWNKLGATLANGNRP----------QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8899999999999999999999999996 999999999999999999999999999999998877766554
Q ss_pred CCCCCCc
Q 017806 320 NPREVSP 326 (365)
Q Consensus 320 ~~~~~~~ 326 (365)
.++...|
T Consensus 265 ~a~~~~~ 271 (327)
T 3cv0_A 265 RAIYMQV 271 (327)
T ss_dssp HHHHHHT
T ss_pred HHHHhCC
Confidence 4444333
No 23
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=4.6e-21 Score=182.25 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=154.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh-------------------------hhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG-------------------------RSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------~~~~~~~~~A~~~ 146 (365)
+..+|.++.+++.+|.++ ...|++++|+.+|++++..+|.. +...|++++|+.+
T Consensus 87 l~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLL-LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455677777777777777 47788888888888877776531 3445788888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
|+++++.+|.+..++..+|.++...|+ +++|+.+|+++++++|+++.+|+.+|.++.. .|++
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 227 (450)
T 2y4t_A 166 LDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDH 227 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------------GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Confidence 888888888888888888888888888 8888888888888888888888888888888 8888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNW------------GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++|+ ..|++++..+|++..++..+ |.++...|++ ++|+.+|++++.+.|++
T Consensus 228 ~~A~-------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 228 ELSL-------SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY----------TDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCSS
T ss_pred HHHH-------HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCcc
Confidence 8888 66677777777777766555 6777777775 55555555555555554
Q ss_pred H----HHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---------------hHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 295 H----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---------------ELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 295 ~----~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
+ .++.++|.++...|+..++...+..++...|. ..+..+..+|.++..++|++......+.
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 2 24445555555555544444443333332222 1245556666666666666655544444
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=2.2e-22 Score=178.34 Aligned_cols=225 Identities=14% Similarity=0.070 Sum_probs=183.3
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPED----YDALYN 163 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~ 163 (365)
++++++.+|.+++ ..|++++|+..|++++..+|. ++...|++++|+.+|+++++ .|.+ ..++..
T Consensus 2 n~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLF-KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHH
Confidence 3567888899995 999999999999999999876 45667999999999999999 4433 456999
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
+|.++...|+ +++|+.+|+++++++|++..++..+|.++.. .|++++|+ ..|+++
T Consensus 80 lg~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a 134 (272)
T 3u4t_A 80 YGKILMKKGQ--------------DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAI-------QYMEKQ 134 (272)
T ss_dssp HHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHH-------HHHGGG
T ss_pred HHHHHHHccc--------------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHH
Confidence 9999999999 9999999999999999999999999999999 99999999 789999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh---hhhhhcCcCC
Q 017806 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE---DTLRTGGTVN 320 (365)
Q Consensus 244 l~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~a~~~~~~ 320 (365)
++.+|+++.+|+++|......+++ ++|+..|+++++++|++..++.++|.++..+|+ ...+...+..
T Consensus 135 l~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 135 IRPTTTDPKVFYELGQAYYYNKEY----------VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 999999999999999444444574 999999999999999999999999999999987 4444444333
Q ss_pred CCCCC---cc-------hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 321 PREVS---PN-------ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 321 ~~~~~---~~-------~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
++... +. ..|...+.++...+..+.+...+.+++.+.+.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 33321 22 34455555556666666666777777766543
No 25
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.88 E-value=2.5e-22 Score=163.13 Aligned_cols=141 Identities=11% Similarity=-0.043 Sum_probs=130.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..+++++..+|+++.+++.+|.+|...|+ |++|+.+|+++++++|+++.+|+++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--------------YDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345778888888888888888889999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH-HHHHHHhCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK-FRAAIQLQFD 293 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~ 293 (365)
++.. .|++++|+ .+|+++++++|+++.+|+++|.+|...|++ ++|... ++++++++|+
T Consensus 74 ~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 74 LYEL----EENTDKAV-------ECYRRSVELNPTQKDLVLKIAELLCKNDVT----------DGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCSS----------SSHHHHHHHHHHHHSTT
T ss_pred HHHH----cCchHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhCcC
Confidence 9999 99999999 889999999999999999999999999997 777765 5999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 017806 294 FHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~ 310 (365)
++.++..++.++...|+
T Consensus 133 ~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999988875
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=3.6e-21 Score=168.68 Aligned_cols=207 Identities=18% Similarity=0.139 Sum_probs=186.6
Q ss_pred ccCCCc-hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 93 EGEDSV-TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 93 ~~~~~~-~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
..+|.. +.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|+++++.+|.+..++
T Consensus 30 ~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYL-QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHH-HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 345554 788999999994 999999999999999998865 35566999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
..+|.++...|+ +++|+.+|++++. ..|.+..++..+|.++.. .|++++|+ ..
T Consensus 109 ~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~ 163 (252)
T 2ho1_A 109 NNYGGFLYEQKR--------------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAK-------EY 163 (252)
T ss_dssp HHHHHHHHHTTC--------------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHHHHHHHHhH--------------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence 999999999999 9999999999999 889999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
|+++++.+|++..++..+|.++...|++ ++|+..|++++...|++..++..++.++...|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------- 225 (252)
T 2ho1_A 164 FEKSLRLNRNQPSVALEMADLLYKEREY----------VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR-------- 225 (252)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH--------
Confidence 9999999999999999999999999996 9999999999999999999999999999998865
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 320 NPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
..+..++.++..+.|+...+...+
T Consensus 226 -----------~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 226 -----------DTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp -----------HHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCCHHHHHHH
Confidence 456667788888888877765543
No 27
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.6e-21 Score=185.47 Aligned_cols=186 Identities=17% Similarity=0.138 Sum_probs=144.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
..+|.++.+++.+|..+. ..|++++|+.+|++++..+|. ++...|++++|+.+|+++++.+|++..++.
T Consensus 20 ~~~p~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLL-AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ---CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 568899999999999995 999999999999999998875 456679999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHHHHhcCCHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNW------------AIAISDRAKMRGRTK 227 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------g~~~~~~~~~~g~~~ 227 (365)
.+|.++..+|+ +++|+.+|+++++++|++. .++..+ |.++.. .|+++
T Consensus 99 ~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~ 160 (450)
T 2y4t_A 99 QRGHLLLKQGK--------------LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYT 160 (450)
T ss_dssp HHHHHHHHTTC--------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHH
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHH
Confidence 99999999999 9999999999999999998 877766 555888 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+|+ ..|+++++.+|++..+++.+|.+|...|++ ++|+..|++++..+|+++.++.++|.++..
T Consensus 161 ~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 161 AAI-------AFLDKILEVCVWDAELRELRAECFIKEGEP----------RKAISDLKAASKLKNDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCG----------GGGHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHhCCCChHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999 667777777777777777777777777776 444444444444444444444444444444
Q ss_pred hhhhhhh
Q 017806 308 LAEDTLR 314 (365)
Q Consensus 308 ~g~~~~a 314 (365)
.|+...+
T Consensus 224 ~g~~~~A 230 (450)
T 2y4t_A 224 LGDHELS 230 (450)
T ss_dssp TTCHHHH
T ss_pred cCCHHHH
Confidence 4433333
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=5.4e-21 Score=176.79 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=164.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------~~~~~~~~~~A~~~ 146 (365)
+..+|.++.+++.+|.++ ...|++++|+..|++++...|. ..+..|++++|+.+
T Consensus 125 l~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 203 (368)
T 1fch_A 125 LELKPDNQTALMALAVSF-TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL 203 (368)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHH
Confidence 345566666666666666 3667777777777766665543 11244888899999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 147 YANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 147 ~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
|+++++.+|. ++.++..+|.++...|+ +++|+.+|++++.++|+++.+++++|.++.. .|
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g 265 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGE--------------YDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GN 265 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----cC
Confidence 9999999999 89999999999999999 9999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC----------
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---------- 294 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------- 294 (365)
++++|+ ..|+++++++|+++.+++++|.++..+|++ ++|+..|++++.++|++
T Consensus 266 ~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 266 QSEEAV-------AAYRRALELQPGYIRSRYNLGISCINLGAH----------REAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCCCccccccch
Confidence 999999 779999999999999999999999999996 99999999999999988
Q ss_pred -HHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 295 -HRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 295 -~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
..+|.++|.++..+|+..++....
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhH
Confidence 899999999999999887666543
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.2e-20 Score=181.50 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=181.7
Q ss_pred hccCCCchH-------HHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCC
Q 017806 92 SEGEDSVTD-------ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNP 155 (365)
Q Consensus 92 ~~~~~~~~~-------a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p 155 (365)
+..+|+++. +++.+|.++ ...|++++|+.+|++++..+|. .+...|++++|+.+|+++++.+|
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFH-FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 566777654 578888888 4999999999999999999876 24455999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.++.++..+|.++...|+ +++|+..|++++.++|++..++..+|.++.. .|++++|+
T Consensus 308 ~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~----- 364 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQD--------------YKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESE----- 364 (537)
T ss_dssp TCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred CCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-----
Confidence 999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------------------------hh----------h
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------------KQ----------T 275 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------------~~----------~ 275 (365)
..|+++++.+|+++.++.++|.++...|+++.|.. .. |
T Consensus 365 --~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 365 --AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp --HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred --HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 77899999999999999999999999999977765 22 9
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCC
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV 324 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~ 324 (365)
++++|+.+|+++++.+|+++.++.++|.++...|+...+...+..++..
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999776555444333333
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=8.6e-21 Score=172.06 Aligned_cols=195 Identities=14% Similarity=0.097 Sum_probs=180.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------~~~~~~~~~~A~~~ 146 (365)
+..+|.++.+++.+|.++ ...|++++|+..|++++...|. .+...|++++|+.+
T Consensus 82 ~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 82 RMLDPKDIAVHAALAVSH-TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHH
T ss_pred HhcCcCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 566889999999999999 4999999999999999998765 14556999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
|+++++.+|.+..++..+|.++...|+ +++|+.+|++++.++|++..++..+|.++.. .|++
T Consensus 161 ~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 222 (327)
T 3cv0_A 161 LHAALEMNPNDAQLHASLGVLYNLSNN--------------YDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRP 222 (327)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCH
Confidence 999999999999999999999999999 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC------------C
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD------------F 294 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~ 294 (365)
++|+ ..|+++++.+|++..++.++|.++...|++ ++|+..|++++.++|+ +
T Consensus 223 ~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 285 (327)
T 3cv0_A 223 QEAL-------DAYNRALDINPGYVRVMYNMAVSYSNMSQY----------DLAAKQLVRAIYMQVGGTTPTGEASREAT 285 (327)
T ss_dssp HHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred HHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCccccccccchhhcC
Confidence 9999 779999999999999999999999999996 9999999999999999 7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
..++.++|.++..+|+..++...+..++
T Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999998887766654444
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=9.8e-21 Score=164.55 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=166.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.++.+++.+|.++. ..|++++|+..|++++..++. .+...|++++|+.+|+++++.+|.+..++
T Consensus 50 l~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 128 (243)
T 2q7f_A 50 IEENKEDAIPYINFANLLS-SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128 (243)
T ss_dssp HTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 4578889999999999994 999999999999999998875 35566999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++...|+ +++|+..|++++.++|++..++..+|.++.. .|++++|+ ..|+
T Consensus 129 ~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~ 183 (243)
T 2q7f_A 129 YMLGTVLVKLEQ--------------PKLALPYLQRAVELNENDTEARFQFGMCLAN----EGMLDEAL-------SQFA 183 (243)
T ss_dssp HHHHHHHHHTSC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHH-------HHHH
T ss_pred HHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 7799
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++++.+|+++.++..+|.++...|++ ++|+.+|+++++++|++..++..++.+....+
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENR----------EKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCT----------THHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999999999997 99999999999999999999999887766544
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=1e-20 Score=158.07 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=154.5
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
+++.+|+.+|.++ ...|++++|+..|++++.++|. .+...|++++|+..+.+++..+|.+..++..+|.
T Consensus 3 e~~~iy~~lG~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKK-RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4678999999999 5999999999999999999987 4566799999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++...++ ++.|+..+.+++.++|++..++..+|.++.. +|++++|+ ..|++++++
T Consensus 82 ~~~~~~~--------------~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~~l~~ 136 (184)
T 3vtx_A 82 ANFMIDE--------------KQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAI-------EAYEKTISI 136 (184)
T ss_dssp HHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHH
T ss_pred HHHHcCC--------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHH-------HHHHHHHHh
Confidence 9999999 9999999999999999999999999999999 99999999 789999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+|+++.+|+++|.+|..+|++ ++|+.+|++|++++|+++
T Consensus 137 ~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 137 KPGFIRAYQSIGLAYEGKGLR----------DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTHHHH
T ss_pred cchhhhHHHHHHHHHHHCCCH----------HHHHHHHHHHHhCCccCH
Confidence 999999999999999999996 999999999999999764
No 33
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=1.4e-20 Score=166.51 Aligned_cols=197 Identities=16% Similarity=0.072 Sum_probs=171.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCC--
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPED-- 157 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~-- 157 (365)
..+|.++..++.+|..++ ..|++++|+..|++++...|. +++..|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFY-NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHH-HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 457788999999999995 999999999999999998765 3566799999999999999998854
Q ss_pred -HHHHHHHHHHHHH--------hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH-----------------HH
Q 017806 158 -YDALYNWALVLQE--------SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YN 211 (365)
Q Consensus 158 -~~~~~~lg~~~~~--------~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~ 211 (365)
..+++.+|.++.. .|+ +++|+..|+++++.+|++..++ +.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTD--------------TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHH--------------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchh--------------HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999 677 9999999999999999986665 88
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
+|.++.. .|++++|+ ..|+++++.+|+ .+.+++++|.+|..+|+...+....|++++|+..|++++
T Consensus 154 la~~~~~----~g~~~~A~-------~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 154 AARLYER----RELYEAAA-------VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHH----TTCHHHHH-------HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----ccCHHHHH-------HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 9999999 99999999 779999999998 567999999999999776555556678899999999999
Q ss_pred HhCCCCH---HHHHHHHHHHHHhhhhhhhh
Q 017806 289 QLQFDFH---RAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 289 ~~~p~~~---~~~~~lg~~~~~~g~~~~a~ 315 (365)
+..|+++ .+...++.++..+++...+.
T Consensus 223 ~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 223 QIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999994 67778888888888776444
No 34
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=5.1e-20 Score=181.47 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=176.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
...|.++.+++.+|.++ ...|++++|+.+|++++..+|. ++...|++++|+..|+++++.+|.+..+|.
T Consensus 367 ~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYY-LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHCTTSHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred hhCcccHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 45677788888888888 4888888888888888877655 345568888888888888888888888888
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.++...|+ +++|+..|+++++++|.++.+|+.+|.++.. .|++++|+ ..|++
T Consensus 446 ~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~ 500 (597)
T 2xpi_A 446 FLGMQHMQLGN--------------ILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAI-------NHFQN 500 (597)
T ss_dssp HHHHHHHHHTC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHH
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHH-------HHHHH
Confidence 88888888888 9999999999999999999999999999999 99999999 45555
Q ss_pred HHhc------CCCC-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 243 AVQL------NWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 243 al~~------~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
+++. +|++ ..+|..+|.++...|++ ++|+..|+++++++|+++.+|..+|.+|...|+.
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---- 566 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMY----------DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP---- 566 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH----
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----
Confidence 5555 6765 78999999999999996 9999999999999999999999999999999965
Q ss_pred cCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 316 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
..+..+|.++..++|++......+..
T Consensus 567 ---------------~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 567 ---------------GLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp ---------------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 45777789999999988776666553
No 35
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=1.3e-20 Score=163.18 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=167.7
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh-h----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE-E----------GRSRQRILTFAAKRYANAIERNPEDYDALYN 163 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~-~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (365)
.+.++.+++.+|.+++ ..|++++|+..|++++..+| . ++...|++++|+.+|+++++.+|++..++..
T Consensus 3 ~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 3 QTTDPNQLKNEGNDAL-NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp -CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred cccCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 3456799999999995 99999999999999999886 3 4566799999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-------DAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
+|.++..+|+ +++|+.+|+++++++|+++ .+|+++|.++.. .|++++|+
T Consensus 82 l~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~------ 137 (228)
T 4i17_A 82 KSAAYRDMKN--------------NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAE------ 137 (228)
T ss_dssp HHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred HHHHHHHccc--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHH------
Confidence 9999999999 9999999999999999998 679999999999 99999999
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCc--c---------------hhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 237 TKNYEKAVQLNWN--SPQALNNWGLALQELSAI--V---------------PAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 237 ~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~--~---------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
..|+++++++|+ ++.+|+++|.+|...|+. + ......+.|++|+.+|+++++++|++..+
T Consensus 138 -~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 138 -ENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp -HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred -HHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 889999999999 999999999999999886 1 11225678899999999999999999999
Q ss_pred HHHHHHHHH
Q 017806 298 IYNLGTVLY 306 (365)
Q Consensus 298 ~~~lg~~~~ 306 (365)
...++.+..
T Consensus 217 ~~~l~~i~~ 225 (228)
T 4i17_A 217 KQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988887653
No 36
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.86 E-value=4e-21 Score=151.23 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=115.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHH
Q 017806 149 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE 228 (365)
Q Consensus 149 ~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~ 228 (365)
++..++|+.+.++.++|.+++..|+ |++|+.+|+++++++|.++.+|+++|.++.. +|++++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~ 65 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD--------------YPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQR 65 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHH
Confidence 4556899999999999999999999 9999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 229 A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
|+ ..|+++++++|+++.+|+++|.+|..+|++ ++|+..|+++++++|++..++.+|+.|+
T Consensus 66 A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 66 AL-------DDCDTCIRLDSKFIKGYIRKAACLVAMREW----------SKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HH-------HHHHHHHHhhhhhhHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99 789999999999999999999999999996 9999999999999999999999999874
No 37
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=3.3e-20 Score=178.79 Aligned_cols=180 Identities=15% Similarity=0.126 Sum_probs=158.0
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRIL-TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
..+.+++++..+.+.....+. .+...|++ ++|+.+|+++++++|++..+|+.+|.+|...|+
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~------- 152 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD------- 152 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-------
Confidence 345688888888887777654 34556999 999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR---------GRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~---------g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
+++|+.+|+++++++|+ ..++.++|.++.. . |++++|+ ..|+++++++|+++
T Consensus 153 -------~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~----~~~~~~~~~~g~~~~A~-------~~~~~al~~~p~~~ 213 (474)
T 4abn_A 153 -------VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ----LQTDSGDEHSRHVMDSV-------RQAKLAVQMDVLDG 213 (474)
T ss_dssp -------HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT----CCCSCHHHHHHHHHHHH-------HHHHHHHHHCTTCH
T ss_pred -------HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH----hccCChhhhhhhHHHHH-------HHHHHHHHhCCCCH
Confidence 99999999999999999 7999999999998 8 6666666 88999999999999
Q ss_pred HHHHHHHHHHHHh--------cCcchhHHhhhHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 252 QALNNWGLALQEL--------SAIVPAREKQTIVRTAISKFRAAIQLQF---DFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 252 ~~~~~lg~~~~~~--------~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
.+|+++|.+|..+ |++ ++|+.+|++++.++| +++.+|+++|.++..+|+..++...+..
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKIS----------QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHH----------HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchH----------HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998 774 999999999999999 9999999999999999987766555544
Q ss_pred CCCCCcc
Q 017806 321 PREVSPN 327 (365)
Q Consensus 321 ~~~~~~~ 327 (365)
++..+|.
T Consensus 284 al~l~p~ 290 (474)
T 4abn_A 284 AAALDPA 290 (474)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 4444444
No 38
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=5.2e-21 Score=192.39 Aligned_cols=189 Identities=16% Similarity=0.077 Sum_probs=167.5
Q ss_pred hHHHHHHHhh-hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhh--------ccChh----------hhhhhhhHHH
Q 017806 82 TMRELLTELK-SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVT--------GVDEE----------GRSRQRILTF 142 (365)
Q Consensus 82 ~~~~~l~~l~-~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al--------~~~~~----------~~~~~~~~~~ 142 (365)
...++...+. ...+|+++.+++..| . ..|++++|++.|++++ ..+|. .+...|++++
T Consensus 376 ~~~~~~~~L~~p~~~p~~~~a~~~~a---~-~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~ 451 (681)
T 2pzi_A 376 TANEIVTALSVPLVDPTDVAASVLQA---T-VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAK 451 (681)
T ss_dssp CHHHHHHHSCCBCCCTTSTTHHHHHH---T-TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHhhCCCccCCCCCcchHHhhc---c-cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHH
Confidence 3344444433 356788898988877 3 7899999999999999 66665 3566799999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 222 (365)
|+..|+++++.+|++..+|+++|.++..+|+ +++|+.+|+++++++|+++.+++++|.++..
T Consensus 452 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~---- 513 (681)
T 2pzi_A 452 ATRKLDDLAERVGWRWRLVWYRAVAELLTGD--------------YDSATKHFTEVLDTFPGELAPKLALAATAEL---- 513 (681)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
+|++++ + ..|+++++++|+++.+|+++|.++..+|++ ++|+..|+++++++|++..+++++|
T Consensus 514 ~g~~~~-~-------~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 514 AGNTDE-H-------KFYQTVWSTNDGVISAAFGLARARSAEGDR----------VGAVRTLDEVPPTSRHFTTARLTSA 575 (681)
T ss_dssp HTCCCT-T-------CHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHTSCTTSTTHHHHHHHHH
T ss_pred cCChHH-H-------HHHHHHHHhCCchHHHHHHHHHHHHHcCCH----------HHHHHHHHhhcccCcccHHHHHHHH
Confidence 999999 9 789999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHhhh
Q 017806 303 TVLYGLAE 310 (365)
Q Consensus 303 ~~~~~~g~ 310 (365)
.++...++
T Consensus 576 ~~~~~~~~ 583 (681)
T 2pzi_A 576 VTLLSGRS 583 (681)
T ss_dssp HHTC----
T ss_pred HHHHccCC
Confidence 99977553
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.2e-19 Score=163.69 Aligned_cols=200 Identities=10% Similarity=-0.017 Sum_probs=161.2
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhcc--Chh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGV--DEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~--~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
+|....++..++..+ ...|+.++|+..+++.+.. +|. .+...|++++|+.+|++ |.+..++.
T Consensus 61 ~~~~~~a~~~la~~~-~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYL-ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHH-HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHH
T ss_pred CChhHHHHHHHHHHH-cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHH
Confidence 455667777778777 4788888888888887754 343 34455888888888887 78888888
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI--AISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~--~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
.+|.++..+|+ +++|+..|+++++++|++.......+. ++.. .|++++|+ ..|
T Consensus 135 ~l~~~~~~~g~--------------~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~~~~~eA~-------~~~ 189 (291)
T 3mkr_A 135 MTVQILLKLDR--------------LDLARKELKKMQDQDEDATLTQLATAWVSLAAG----GEKLQDAY-------YIF 189 (291)
T ss_dssp HHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----TTHHHHHH-------HHH
T ss_pred HHHHHHHHCCC--------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----chHHHHHH-------HHH
Confidence 88888888888 999999999999999887644333332 2223 57888888 779
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
+++++.+|+++.+|+++|.++..+|++ ++|+..|++++.++|+++.++.++|.++..+|+..
T Consensus 190 ~~~l~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~-------- 251 (291)
T 3mkr_A 190 QEMADKCSPTLLLLNGQAACHMAQGRW----------EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP-------- 251 (291)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH--------
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH--------
Confidence 999999999999999999999999996 99999999999999999999999999999999764
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCccHHHHHHH
Q 017806 321 PREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 353 (365)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~a 353 (365)
..+..++.++..++|+++.....
T Consensus 252 ----------eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 252 ----------EVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCChHHHHH
Confidence 34566778888888887765543
No 40
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=3.5e-20 Score=182.66 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=168.6
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
|.++.+++.+|.++ ...|++++|+.+|++++..+|. ++...|++++|+..|+++++.+|.+..++..+|
T Consensus 302 ~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 380 (597)
T 2xpi_A 302 EKSSDLLLCKADTL-FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380 (597)
T ss_dssp GGCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred CchHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 56677777778777 3778888888888877766653 334456666666666666666666666666666
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ---------- 235 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~---------- 235 (365)
.+|...|+ +++|+..|+++++++|.+..+|+.+|.++.. .|++++|+..|++
T Consensus 381 ~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 381 IYYLCVNK--------------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHHHHhcc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchH
Confidence 66666666 6666666666666666666666666666666 6666666644322
Q ss_pred -----------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh------CC
Q 017806 236 -----------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL------QF 292 (365)
Q Consensus 236 -----------------A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p 292 (365)
|+..|+++++.+|+++.+|+.+|.+|...|++ ++|+..|+++++. +|
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM----------QTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhhhccccch
Confidence 34677777777777778888888888877775 9999999999998 66
Q ss_pred CC-HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 293 DF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN--ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 293 ~~-~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
++ ..+|..+|.++...|+..++...+..+....|. ..|......+...+..+.+...+.+++++.+.
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 65 789999999999999998888777666655554 34666666667777777777777777776554
No 41
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=1.2e-20 Score=189.66 Aligned_cols=173 Identities=21% Similarity=0.297 Sum_probs=157.6
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
..|++++++++||.++..+|+ +++|+.+|+++++++|+++.++++||.++.. +|++++|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~--------------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~----~g~~~eA~-- 63 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGN--------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEAL-- 63 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred CCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH--
Confidence 468999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
..|+++++++|+++.+|+++|.+|..+|++ ++|+++|+++++++|+++.++++||.++..+|+..
T Consensus 64 -----~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~----------~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 64 -----MHYKEAIRISPTFADAYSNMGNTLKEMQDV----------QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp -----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred hhhcCcCCCCCCCcc--hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 313 LRTGGTVNPREVSPN--ELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 313 ~a~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
+++..+..++..+|. ..+......+......+.+...+.+++.+.++.
T Consensus 129 eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999888888888776 346666667677788888888888888776653
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=181.00 Aligned_cols=190 Identities=14% Similarity=0.035 Sum_probs=159.1
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------h--hh--hhhhHHHHHHHHHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------G--RS--RQRILTFAAKRYANAIE 152 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~--~~--~~~~~~~A~~~~~~al~ 152 (365)
..+|....++.++|.+|. .+|++++|+.+|++++.+.+. + +. ..++|++|+.+|+++++
T Consensus 88 ~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 88 QAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp GCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 346777788999999994 999999999999999876432 1 11 23689999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
++|+++.++..+|.++..+++ .+++++|+..|+++++++|++..++.++|..+.......|++++|+
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~-----------~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~-- 233 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDN-----------WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE-- 233 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHH-----------SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHH--
T ss_pred hCCCCHHHHHHHHHHHHHhcC-----------chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHH--
Confidence 999999999999999876644 1116889999999999999999999999988877222245566666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+.|++++..+|+++.++.++|.+|...|++ ++|+..|+++++.+|+++.+++++|.+|...+..
T Consensus 234 -----~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 234 -----KLVEEALEKAPGVTDVLRSAAKFYRRKDEP----------DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp -----HHHHHHHHHCSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhCccHHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999996 9999999999999999999999999999776543
No 43
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=5.1e-20 Score=178.90 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhcCcccc-------------------CCCCchhhhHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYD-------ALYNWALVLQESADNVSL-------------------DSTSPSKDALLEEA 191 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~a-------------------~~~~~~~~~~~~~A 191 (365)
|++++|+..|+++++.+|++.. ++..+|.++...|++..+ .+......|++++|
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 3566677777777777777654 355555666666662211 00011111225555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 271 (365)
+.+|+++++++|+++.++..+|.++.. .|++++|+ ..|+++++.+|++..+|.++|.++...|++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~la~~~~~~g~~---- 360 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFI----LQDYKNAK-------EDFQKAQSLNPENVYPYIQLACLLYKQGKF---- 360 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCSHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----
Confidence 555555555555555555555555555 55555555 667777777777777777777777777775
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc------------------------
Q 017806 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN------------------------ 327 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~------------------------ 327 (365)
++|+..|++++..+|+++.++.++|.++...|+...+...+..++...|.
T Consensus 361 ------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 361 ------TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp ------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999887776554333222111
Q ss_pred -------hHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 328 -------ELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 328 -------~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
..+..+..+|.++...+|.+.....
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 466 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4566677777777777776554433
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.7e-20 Score=161.39 Aligned_cols=171 Identities=16% Similarity=0.039 Sum_probs=161.4
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccc
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS 176 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 176 (365)
+.+++.+|.++ ...|++++|+.+|++++.+.+. .+...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 79 ~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (258)
T 3uq3_A 79 SKSFARIGNAY-HKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--- 154 (258)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC---
Confidence 68999999999 4999999999999999998876 45667999999999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 017806 177 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (365)
Q Consensus 177 a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~ 256 (365)
+++|+.+|+++++++|.++.+++++|.++.. .|++++|+ ..|+++++.+|+++.+|..
T Consensus 155 -----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 155 -----------WPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAI-------ADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp -----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHH
T ss_pred -----------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhCHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 7799999999999999999
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVL 305 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~ 305 (365)
+|.++..+|++ ++|+.+|+++++++ |++..++..++.++
T Consensus 213 l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 213 KATAQIAVKEY----------ASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHhhH----------HHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999999996 99999999999999 99998888887653
No 45
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=3.4e-20 Score=150.43 Aligned_cols=137 Identities=17% Similarity=0.112 Sum_probs=124.1
Q ss_pred hcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 104 SQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 104 ~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
.+|.++ ...|++++|+..+++++..+|. .++..|++++|+.+|+++++++|+++.+|+++|.++..+|+
T Consensus 2 ~LG~~~-~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 2 PLGSMR-RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -----C-CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HhHHHH-HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 478899 5999999999999999999876 45667999999999999999999999999999999999999
Q ss_pred ccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHhcCCCCHH
Q 017806 174 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN-YEKAVQLNWNSPQ 252 (365)
Q Consensus 174 ~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~-~~~al~~~p~~~~ 252 (365)
+++|+.+|+++++++|+++.+++++|.++.. .|++++|. +. ++++++++|+++.
T Consensus 81 --------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa-------~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 81 --------------TDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRA-------KYWVERAAKLFPGSPA 135 (150)
T ss_dssp --------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHH-------HHHHHHHHHHSTTCHH
T ss_pred --------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHHHhCcCCHH
Confidence 9999999999999999999999999999999 99998877 44 5899999999999
Q ss_pred HHHHHHHHHHHhcC
Q 017806 253 ALNNWGLALQELSA 266 (365)
Q Consensus 253 ~~~~lg~~~~~~~~ 266 (365)
++..++.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999988876
No 46
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=2.5e-19 Score=153.41 Aligned_cols=161 Identities=17% Similarity=0.086 Sum_probs=133.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYN----------------WALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
+..|++++|+.+|+++++.+|+++.+|+. +|.++..+|+ +++|+.+|+++
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~a 80 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------------YDKAYLFYKEL 80 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------------HHHHHHHHHHH
Confidence 45577888888888888888888888888 9999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 199 l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
++++|+++.+++++|.++.. .|++++|+ ..|+++++++|+++.+|+++|.+|...|+. ...
T Consensus 81 l~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~~~~--------~~~ 141 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQVC----RGQEKDAL-------RMYEKILQLEADNLAANIFLGNYYYLTAEQ--------EKK 141 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHhHH--------HHH
Confidence 99999999999999999999 99999999 889999999999999999999999887752 236
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHH
Q 017806 279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 348 (365)
.+...|++++...|. ..+++++|.++..+|+. ..+..+|.++..+.|+..
T Consensus 142 ~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~-------------------~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 142 KLETDYKKLSSPTKM-QYARYRDGLSKLFTTRY-------------------EKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHC---CCCHH-HHHHHHHHHHHHHHHTH-------------------HHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHhCCCch-hHHHHHHHHHHHHccCH-------------------HHHHHHHHHHHHhCCCHH
Confidence 778888888754432 35788899999988855 446666677777777654
No 47
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6.9e-20 Score=176.68 Aligned_cols=210 Identities=14% Similarity=0.103 Sum_probs=182.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|. ..+++.+|.++ ...|++++|+..|++++..+|. .+...|++++|+.+|+++++.+|.+..++
T Consensus 264 l~~~~~-~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 264 IELFPR-VNSYIYMALIM-ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHHCCC-HHHHHHHHHHH-HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred HhhCcc-HHHHHHHHHHH-HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 455677 88899999999 4999999999999999988875 34556899999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+ ..|+
T Consensus 342 ~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~ 396 (514)
T 2gw1_A 342 IQLACLAYRENK--------------FDDCETLFSEAKRKFPEAPEVPNFFAEILTD----KNDFDKAL-------KQYD 396 (514)
T ss_dssp HHHHHHTTTTTC--------------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----TTCHHHHH-------HHHH
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----CCCHHHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 6688
Q ss_pred HHHhcCCCCHH------HHHHHHHHHHH---hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 242 KAVQLNWNSPQ------ALNNWGLALQE---LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 242 ~al~~~p~~~~------~~~~lg~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
+++..+|++.. +++++|.++.. .|++ ++|+..|++++..+|+++.++..+|.++...|+..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF----------IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 88888887754 99999999999 8886 99999999999999999999999999999999664
Q ss_pred hhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
.+..+|.++..++|.+.....++...
T Consensus 467 -------------------~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 467 -------------------EAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp -------------------HHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 46666677777777776665555433
No 48
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.7e-20 Score=178.61 Aligned_cols=201 Identities=13% Similarity=0.046 Sum_probs=164.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh--------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG-------------------------------------- 133 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------- 133 (365)
+..+|+++.+++.+|.++. ..|++++|+..|++++..+|..
T Consensus 66 l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANE-GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred hccChHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5678999999999999994 9999999999999998877510
Q ss_pred ---------------------------------------------------hh---hhhhHHHHHHHHHHHHH-----h-
Q 017806 134 ---------------------------------------------------RS---RQRILTFAAKRYANAIE-----R- 153 (365)
Q Consensus 134 ---------------------------------------------------~~---~~~~~~~A~~~~~~al~-----~- 153 (365)
.+ ..|++++|+.+|+++++ +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 11 26899999999999999 5
Q ss_pred -C-------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Q 017806 154 -N-------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 154 -~-------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
+ |.+..+++.+|.++...|+ +++|+..|+++++.+|+ ..++..+|.++.. .|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~----~~~ 285 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKND--------------PLGAHEDIKKAIELFPR-VNSYIYMALIMAD----RND 285 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSC--------------HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT----SSC
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH----CCC
Confidence 4 5557789999999999999 99999999999999999 9999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------------------hhhHHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------KQTIVRTAI 281 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------~~~~~~~A~ 281 (365)
+++|+ ..|++++..+|++..++..+|.++...|+++.|.. ..|++++|+
T Consensus 286 ~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 286 STEYY-------NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp CTTGG-------GHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHH-------HHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99998 55666666666666666666666666666654443 445568888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
..|++++..+|+++.++.++|.++...|+...+...+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888887777655443
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.3e-19 Score=168.75 Aligned_cols=207 Identities=13% Similarity=-0.010 Sum_probs=168.6
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------hhhhhhhHHHHHHHHHHHHHhC
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------GRSRQRILTFAAKRYANAIERN 154 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~A~~~~~~al~~~ 154 (365)
..+.....+..+|.++. ..|++++|+..|++++.+.+. .+...|++++|+.+|++++++.
T Consensus 46 ~~~~~a~~yn~Lg~~~~-~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKH-LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp C---CCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 34455677889999994 999999999999999886321 3556799999999999999873
Q ss_pred --------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 155 --------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 155 --------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
+..+.++.++|.++...|. ++|++|+.+|+++++++|+++.++.++|.++.. ....++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~-l~~~~~~ 191 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGG------------NQNERAKVCFEKALEKKPKNPEFTSGLAIASYR-LDNWPPS 191 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCT------------THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHSCCC
T ss_pred HhcccccchhhHHHHHHHHHHHHHHcc------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCchHH
Confidence 4568899999998887764 349999999999999999999999999998654 1115677
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
++|+ ..|+++++++|+++.++.++|..+...+.. .+++++|+.+|++++..+|+++.++.++|.++.
T Consensus 192 ~~al-------~~~~~al~l~p~~~~~~~~l~~~~~~~~~~------~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 192 QNAI-------DPLRQAIRLNPDNQYLKVLLALKLHKMREE------GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp CCTH-------HHHHHHHHHCSSCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHhhcCCcchHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 7888 779999999999999999999988887653 445689999999999999999999999999999
Q ss_pred HhhhhhhhhcCcCCCCCCCcc
Q 017806 307 GLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~ 327 (365)
..|+...+...+..++...|.
T Consensus 259 ~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred HcCchHHHHHHHHHHHHhCCC
Confidence 999888777766666665555
No 50
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=4.7e-19 Score=178.15 Aligned_cols=158 Identities=9% Similarity=-0.043 Sum_probs=151.5
Q ss_pred hhhhhHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 135 SRQRILTFAAKRYANAI--------ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
...|++++|+..|++++ +.+|++..+++.+|.++..+|+ +++|+..|+++++++|++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD--------------VAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHCCCH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHhccCcchH
Confidence 34589999999999999 9999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.+|+++|.++.. .|++++|+ ..|+++++++|+++.+|+++|.++..+|++ ++ +.+|++
T Consensus 468 ~a~~~lg~~~~~----~g~~~~A~-------~~~~~al~l~P~~~~~~~~lg~~~~~~g~~----------~~-~~~~~~ 525 (681)
T 2pzi_A 468 RLVWYRAVAELL----TGDYDSAT-------KHFTEVLDTFPGELAPKLALAATAELAGNT----------DE-HKFYQT 525 (681)
T ss_dssp HHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCSHHHHHHHHHHHHHTCC----------CT-TCHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHcCCh----------HH-HHHHHH
Confidence 999999999999 99999999 889999999999999999999999999997 99 999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch
Q 017806 287 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE 328 (365)
Q Consensus 287 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~ 328 (365)
+++++|+++.+++++|.++..+|+..++...+..++..+|..
T Consensus 526 al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 526 VWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 999999999999999999999999999999999999988875
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=7.4e-19 Score=155.52 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=94.8
Q ss_pred HHhcCCChhHhhhcHHHHHHHHHHhhccC----hh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 102 SFSQGNTPHQLAEQNNAAMELINSVTGVD----EE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 102 ~~~~g~~~~~~~g~~~~A~~~~~~al~~~----~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
.+.++..+ ...|++++|+..|++++... +. .+...|++++|+.+|+++++++|.+..++..+|.+
T Consensus 8 ~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 86 (275)
T 1xnf_A 8 SEVLAVPL-QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86 (275)
T ss_dssp GGGSCCCC-CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred Ccceeecc-CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34455555 36666666666666666652 11 23444666677777777777666666666677777
Q ss_pred HHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 168 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
+...|+ +++|+.+|+++++++|++..+++.+|.++.. .|++++|+ ..|+++++++
T Consensus 87 ~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~a~~~~ 141 (275)
T 1xnf_A 87 LTQAGN--------------FDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQ-------DDLLAFYQDD 141 (275)
T ss_dssp HHHTTC--------------HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHC
T ss_pred HHHccC--------------HHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHH-------HHHHHHHHhC
Confidence 666666 6777777777776666666666777776666 66666666 5566666666
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
|++...+..++.+ ...|++ ++|+..|++++...|.+
T Consensus 142 ~~~~~~~~~~~~~-~~~~~~----------~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 142 PNDPFRSLWLYLA-EQKLDE----------KQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp TTCHHHHHHHHHH-HHHHCH----------HHHHHHHHHHHHHSCCC
T ss_pred CCChHHHHHHHHH-HHhcCH----------HHHHHHHHHHHhcCCcc
Confidence 6666555444433 334553 55555555555444443
No 52
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=3.3e-19 Score=140.20 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=109.1
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
..+|+..+++..+|..+ +..|+|++|+.+|+++++++|.++.+|+++|.++..+|
T Consensus 7 ~inP~~a~~~~~~G~~~-------------------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 61 (126)
T 4gco_A 7 YINPELAQEEKNKGNEY-------------------------FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61 (126)
T ss_dssp CCCHHHHHHHHHHHHHH-------------------------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHCHHHHHHHHHHHHHH-------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc
Confidence 35677777777777766 46677899999999999999999999999999999999
Q ss_pred CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
+ +++|+..|+++++++|+++.+|+++|.++.. +|++++|+ ..|+++++++|++..
T Consensus 62 ~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~-------~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 62 E--------------FQRALDDCDTCIRLDSKFIKGYIRKAACLVA----MREWSKAQ-------RAYEDALQVDPSNEE 116 (126)
T ss_dssp C--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHH
T ss_pred c--------------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHHCcCCHH
Confidence 9 9999999999999999999999999999999 99999999 889999999999999
Q ss_pred HHHHHHHHH
Q 017806 253 ALNNWGLAL 261 (365)
Q Consensus 253 ~~~~lg~~~ 261 (365)
++.+++.++
T Consensus 117 a~~~l~~~l 125 (126)
T 4gco_A 117 AREGVRNCL 125 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999875
No 53
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=1.5e-18 Score=143.62 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=152.1
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
.....++.+|.++. ..|++++|+..|++++...|. .+...|++++|+.+|+++++.+|.+..++..+|.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 6 IRQVYYRDKGISHA-KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHH-HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34577888999994 999999999999999998865 3556799999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++...|+ +++|+.+|++++.++|.+..++..+|.++.. .|++++|+ ..++++++.
T Consensus 85 ~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~ 139 (186)
T 3as5_A 85 TYVQVQK--------------YDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAI-------DSFKIALGL 139 (186)
T ss_dssp HHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHH
T ss_pred HHHHhcC--------------HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHH-------HHHHHHHhc
Confidence 9999999 9999999999999999999999999999999 99999999 778999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
+|+++.++..+|.++...|++ ++|+.+|+++++++|++..
T Consensus 140 ~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 140 RPNEGKVHRAIAFSYEQMGRH----------EEALPHFKKANELDEGASV 179 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHCCCG
T ss_pred CccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCchh
Confidence 999999999999999999996 9999999999999887653
No 54
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.81 E-value=1.4e-19 Score=146.93 Aligned_cols=122 Identities=17% Similarity=0.049 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 218 (365)
++-.+-..+++++.++|++..+++.+|.++...|+ +++|+.+|++++.++|+++.+|+++|.++..
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445556788899999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 219 ~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+.+|++++++.|+..
T Consensus 83 ----~g~~~~Ai-------~~~~~al~l~P~~~~~~~~lg~~~~~lg~~----------~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 83 ----KEQFQQAA-------DLYAVAFALGKNDYTPVFHTGQCQLRLKAP----------LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ----TTCHHHHH-------HHHHHHHHHSSSCCHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCHH
T ss_pred ----HccHHHHH-------HHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCHH
Confidence 99999999 889999999999999999999999999996 999999999999999864
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=3.3e-19 Score=161.92 Aligned_cols=188 Identities=8% Similarity=-0.014 Sum_probs=159.3
Q ss_pred hccCCCchHHHHhcCCChhHh-------hhcH-------HHHHHHHHHhhc-cChhh----------hhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQL-------AEQN-------NAAMELINSVTG-VDEEG----------RSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~----------~~~~~~~~~A~~~ 146 (365)
+..+|.++.+|+.+|.++. . .|++ ++|+..|++++. ++|.. +...|++++|+..
T Consensus 43 l~~~p~~~~~w~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 121 (308)
T 2ond_A 43 LLVLGHHPDIWYEAAQYLE-QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH-HhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5678999999999998873 3 3664 899999999999 67761 3345899999999
Q ss_pred HHHHHHhCCCCHH-HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Q 017806 147 YANAIERNPEDYD-ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 147 ~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
|+++++++|.++. +|.++|.++...|+ +++|+..|+++++.+|.+..+|...+.+... ..|+
T Consensus 122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~ 184 (308)
T 2ond_A 122 YNRLLAIEDIDPTLVYIQYMKFARRAEG--------------IKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKD 184 (308)
T ss_dssp HHHHHTSSSSCTHHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCC
T ss_pred HHHHHhccccCccHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCC
Confidence 9999999999887 89999999999999 9999999999999999988888877766543 0599
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh---CC-CCHHHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL---QF-DFHRAIYNL 301 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p-~~~~~~~~l 301 (365)
+++|+ ..|+++++.+|+++.+|.++|.++..+|++ ++|+..|++++.. .| +...+|..+
T Consensus 185 ~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 185 KSVAF-------KIFELGLKKYGDIPEYVLAYIDYLSHLNED----------NNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp HHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999 778888889999999999999999999996 9999999999995 55 378899999
Q ss_pred HHHHHHhhhhhhh
Q 017806 302 GTVLYGLAEDTLR 314 (365)
Q Consensus 302 g~~~~~~g~~~~a 314 (365)
+..+...|+...+
T Consensus 248 ~~~~~~~g~~~~a 260 (308)
T 2ond_A 248 LAFESNIGDLASI 260 (308)
T ss_dssp HHHHHHHSCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 9999888866533
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=2e-18 Score=151.15 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=160.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+...|++++|+.+|+++++.+|.+..++..+|.++...|+ +++|+..|+++++++|.+..++..+|
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME--------------PKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 4567899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
.++.. .|++++|+ ..|++++. .+|.+..++.++|.++...|++ ++|+.+|++++..+
T Consensus 113 ~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 113 GFLYE----QKRYEEAY-------QRLLEASQDTLYPERSRVFENLGLVSLQMKKP----------AQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHH----TTCHHHHH-------HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHC
T ss_pred HHHHH----HhHHHHHH-------HHHHHHHhCccCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcC
Confidence 99999 99999999 77888888 7899999999999999999996 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch--HHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE--LYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 292 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
|.+..++..+|.++...|+..++...+..++...|.. .+.....++......+.+...+..++.+.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999888877666665555543 23333344344444444444455554443
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.80 E-value=9.1e-19 Score=154.93 Aligned_cols=195 Identities=11% Similarity=-0.004 Sum_probs=144.5
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
.|.++.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|+++++++|.+..++..+
T Consensus 39 ~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 39 DDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 4567899999999995 999999999999999999876 35566999999999999999999999999999
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
|.++...|+ +++|+.+|+++++++|++......++.+ .. .|++++|+. .+++++
T Consensus 118 a~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~----~~~~~~A~~-------~~~~~~ 171 (275)
T 1xnf_A 118 GIALYYGGR--------------DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ----KLDEKQAKE-------VLKQHF 171 (275)
T ss_dssp HHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH----HHCHHHHHH-------HHHHHH
T ss_pred HHHHHHhcc--------------HHHHHHHHHHHHHhCCCChHHHHHHHHH-HH----hcCHHHHHH-------HHHHHH
Confidence 999999999 9999999999999999998777666644 56 799999994 455555
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
...|.+...+. ++.++...++. ++|+..+++++...|. ++.++..+|.++...|+..++...+..
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISE----------QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCH----------HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCcchHHHH-HHHHHHHhcCH----------HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555544433 34444444443 5555555555554442 245555555555555555555555544
Q ss_pred CCCCCcc
Q 017806 321 PREVSPN 327 (365)
Q Consensus 321 ~~~~~~~ 327 (365)
++..+|.
T Consensus 241 al~~~p~ 247 (275)
T 1xnf_A 241 AVANNVH 247 (275)
T ss_dssp HHTTCCT
T ss_pred HHhCCch
Confidence 4444444
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=3.2e-18 Score=152.15 Aligned_cols=172 Identities=15% Similarity=0.156 Sum_probs=92.6
Q ss_pred CCchHHHHhcCCChhHh----hhcHHHHHHHHHHhhccChh--------hhhh----hhhHHHHHHHHHHHHHhCCCCHH
Q 017806 96 DSVTDASFSQGNTPHQL----AEQNNAAMELINSVTGVDEE--------GRSR----QRILTFAAKRYANAIERNPEDYD 159 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~----~g~~~~A~~~~~~al~~~~~--------~~~~----~~~~~~A~~~~~~al~~~p~~~~ 159 (365)
++++.+++.+|.++ .. .+++++|+.+|++++..+.. .+.. .+++++|+.+|+++++. +++.
T Consensus 35 ~~~~~a~~~lg~~~-~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 111 (273)
T 1ouv_A 35 LKENSGCFNLGVLY-YQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAE 111 (273)
T ss_dssp TTCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCCHHHHHHHHHHH-HcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCcc
Confidence 45555555555555 25 55555566655555555321 2233 45555566656555554 2555
Q ss_pred HHHHHHHHHHH----hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 160 ALYNWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 160 ~~~~lg~~~~~----~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
+++++|.++.. .++ +++|+.+|+++++.+ +..+++++|.++....-..+++++|+
T Consensus 112 a~~~lg~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~----- 170 (273)
T 1ouv_A 112 GCASLGGIYHDGKVVTRD--------------FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKAL----- 170 (273)
T ss_dssp HHHHHHHHHHHCSSSCCC--------------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH-----
T ss_pred HHHHHHHHHHcCCCcccC--------------HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHH-----
Confidence 55555655555 555 566666666655544 45555555555543000034555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
.+|+++++. +++.+++++|.+|.. .+++ ++|+.+|+++++.+| +.+++++|.++..
T Consensus 171 --~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~----------~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 171 --ASYDKACDL--KDSPGCFNAGNMYHHGEGATKNF----------KEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp --HHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCH----------HHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred --HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccH----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 555665554 245556666666665 5553 666666666665543 5556666666554
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=5.6e-18 Score=144.94 Aligned_cols=159 Identities=15% Similarity=0.059 Sum_probs=145.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...|++++|+.+|+++++.+|.+..++..+|.++...|+ +++|+.+|++++.++|.+..++..+
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV--------------NDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34567999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 213 AIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 213 g~~~~~~~~~~-g~~~~A~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
|.++.. . |++++|+ ..|+++++ .+|.+..+++++|.++...|++ ++|+.+|++++.
T Consensus 83 ~~~~~~----~~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~ 141 (225)
T 2vq2_A 83 GWFLCG----RLNRPAESM-------AYFDKALADPTYPTPYIANLNKGICSAKQGQF----------GLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHT----TTCCHHHHH-------HHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHH
T ss_pred HHHHHH----hcCcHHHHH-------HHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 999999 9 9999999 66888887 6677789999999999999996 999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 290 LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 290 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
.+|++..++..+|.++...|+..++...+..++...|
T Consensus 142 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988777666555544444
No 60
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.1e-17 Score=150.90 Aligned_cols=168 Identities=15% Similarity=0.068 Sum_probs=145.8
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
.+|+++.+++.+|.++ ...|++++|+..|++ ..++. .+...|++++|+..|+++++.+|++.......+.
T Consensus 96 ~~P~~~~~~~~la~~~-~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 172 (291)
T 3mkr_A 96 VDVTNTTFLLMAASIY-FYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172 (291)
T ss_dssp CCCSCHHHHHHHHHHH-HHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-HHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence 3699999999999999 599999999999998 23322 3556799999999999999999998754444343
Q ss_pred HHH--HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 167 VLQ--ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 167 ~~~--~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
+.. ..|+ +++|+.+|+++++.+|+++.+++++|.++.. +|++++|+ ..|++++
T Consensus 173 ~~l~~~~~~--------------~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~-------~~l~~al 227 (291)
T 3mkr_A 173 VSLAAGGEK--------------LQDAYYIFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAE-------GVLQEAL 227 (291)
T ss_dssp HHHHHCTTH--------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHH
T ss_pred HHHHhCchH--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHH
Confidence 333 2355 9999999999999999999999999999999 99999999 7899999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHH-HHHHHHHHHHhCCCCHHHHH
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT-AISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~ 299 (365)
+.+|+++.+++++|.++...|+. .+ +..+++++++++|+++.+..
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~----------~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKP----------PEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999997 65 67899999999999998754
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=7.7e-18 Score=139.35 Aligned_cols=145 Identities=11% Similarity=0.082 Sum_probs=138.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...|++++|+..|+++++.+|.+..++..+|.++...|+ +++|+.+|+++++++|.+..++..+
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~ 82 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------------VDRGTELLERSLADAPDNVKVATVL 82 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34567899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
|.++.. .|++++|+ ..|++++..+|+++.++..+|.++...|++ ++|+.+|++++...|
T Consensus 83 a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 83 GLTYVQ----VQKYDLAV-------PLLIKVAEANPINFNVRFRLGVALDNLGRF----------DEAIDSFKIALGLRP 141 (186)
T ss_dssp HHHHHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCT
T ss_pred HHHHHH----hcCHHHHH-------HHHHHHHhcCcHhHHHHHHHHHHHHHcCcH----------HHHHHHHHHHHhcCc
Confidence 999999 99999999 778999999999999999999999999996 999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhh
Q 017806 293 DFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~ 312 (365)
+++.++..+|.++...|+..
T Consensus 142 ~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999664
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=1e-19 Score=171.03 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=150.1
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHh------CC
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIER------NP 155 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~------~p 155 (365)
+.....++.+|..++ ..|++++|+.+|++++...+. .+...|++++|+.+|++++++ .|
T Consensus 45 ~~~~~~l~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLC-NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 344567788899995 999999999999999998765 345569999999999999998 57
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHhcCC----
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------CPTLHDAFYNWAIAISDRAKMRGR---- 225 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~g~---- 225 (365)
....++..+|.++...|+ +++|+.+|++++.+ .+....++.++|.++.. .|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~ 185 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGR--------------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQ 185 (411)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCccccc
Confidence 788999999999999999 99999999999998 56678899999999999 999
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCcchhHH---------------------
Q 017806 226 ------TKEAEELWKQATKNYEKAVQL------NWNSPQALNNWGLALQELSAIVPARE--------------------- 272 (365)
Q Consensus 226 ------~~~A~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~~~~--------------------- 272 (365)
+.+|...+++|+..|++++++ .+....++.++|.++...|+++.|..
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 444444444444555555443 23445688888888888888733332
Q ss_pred ---------hhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 273 ---------KQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 273 ---------~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
..|++++|+.+|++++.+.+.. ..++.++|.++...|+..++...+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344556666666655554432 445555666666655555554443
No 63
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=1.4e-18 Score=156.58 Aligned_cols=175 Identities=9% Similarity=0.036 Sum_probs=146.6
Q ss_pred hcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCccccCCCCchhhhH
Q 017806 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE------DYDALYNWALVLQESADNVSLDSTSPSKDAL 187 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~ 187 (365)
+++++|+..|+++.. .+...|++++|+.+|.+++++.+. .+.++.++|.+|..+|+
T Consensus 31 ~~~~~A~~~~~~a~~----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------------- 92 (292)
T 1qqe_A 31 YKFEEAADLCVQAAT----IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-------------- 92 (292)
T ss_dssp HHHHHHHHHHHHHHH----HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred ccHHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--------------
Confidence 469999999999843 456679999999999999998532 26789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhcCCCC------HHHH
Q 017806 188 LEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNS------PQAL 254 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~-g~~~~A~~~~~~A~~~~~~al~~~p~~------~~~~ 254 (365)
+++|+.+|++++++.|.. ..++.++|.++.. . |++++|+.. |++++++.|.. ..++
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~-------~~~Al~~~~~~~~~~~~~~~~ 161 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDC-------YELAGEWYAQDQSVALSNKCF 161 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHH-------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHH-------HHHHHHHHHhCCChHHHHHHH
Confidence 999999999999997753 5689999999999 8 999999955 55555554433 5689
Q ss_pred HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-------AIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 255 ~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
.++|.++..+|++ ++|+.+|++++.+.|++.. ++.++|.++..+|+...+...+..++...|.
T Consensus 162 ~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 162 IKCADLKALDGQY----------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHTTCH----------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHhCCH----------HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999996 9999999999999987643 6899999999999999988888777776665
No 64
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.78 E-value=6.7e-19 Score=142.45 Aligned_cols=132 Identities=16% Similarity=0.067 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 222 (365)
+-..|++++.++|++..+++.+|.++...|+ +++|+..|++++.++|+++.+|+++|.++..
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 67 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGX--------------YEDAHXVFQALCVLDHYDSRFFLGLGACRQA---- 67 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----
Confidence 3456889999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.|++++|+ ..|++++.++|+++.+++++|.+|..+|++ ++|+.+|+++++++|+++.....+.
T Consensus 68 ~g~~~~A~-------~~~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 68 MGQYDLAI-------HSYSYGAVMDIXEPRFPFHAAECLLQXGEL----------AEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HhhHHHHH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCCcchHHHH
Confidence 99999999 889999999999999999999999999996 9999999999999998876655555
Q ss_pred HHHHHhh
Q 017806 303 TVLYGLA 309 (365)
Q Consensus 303 ~~~~~~g 309 (365)
.+...+.
T Consensus 131 ~~~~~l~ 137 (148)
T 2vgx_A 131 RVSSMLE 137 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=5.9e-18 Score=153.65 Aligned_cols=208 Identities=13% Similarity=0.034 Sum_probs=169.9
Q ss_pred HHHHHHHHHhhccChhh--------hh---------hhhhH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHh
Q 017806 117 NAAMELINSVTGVDEEG--------RS---------RQRIL-------TFAAKRYANAIE-RNPEDYDALYNWALVLQES 171 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~--------~~---------~~~~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~ 171 (365)
++|+..|++++..+|.. .+ ..|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 68889999999987761 11 12554 899999999999 7999999999999999999
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
|+ +++|+..|+++++++|.++. +|.++|.++.. .|++++|+ ..|+++++.+|.+
T Consensus 113 ~~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~-------~~~~~a~~~~p~~ 167 (308)
T 2ond_A 113 MK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGR-------MIFKKAREDARTR 167 (308)
T ss_dssp TC--------------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHH-------HHHHHHHTSTTCC
T ss_pred CC--------------HHHHHHHHHHHHhccccCccHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhcCCCC
Confidence 99 99999999999999999987 99999999999 99999999 7899999999999
Q ss_pred HHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCC---Cc
Q 017806 251 PQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV---SP 326 (365)
Q Consensus 251 ~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~---~~ 326 (365)
..+|...+.+... .|++ ++|+..|+++++.+|+++.+|.++|.++...|+...+...+..++.. .|
T Consensus 168 ~~~~~~~a~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp THHHHHHHHHHHHTSCCH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 8888877666544 5775 99999999999999999999999999999999998888777666653 33
Q ss_pred c---hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 327 N---ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 327 ~---~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
. ..|.....+....+..+.....+.++++..+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 2 34444444545555444455555666655554
No 66
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=9.1e-18 Score=143.61 Aligned_cols=168 Identities=14% Similarity=0.067 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN----------------WAIAISDRA 220 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~~ 220 (365)
..+.++..|..+...|+ +++|+.+|+++++++|+++.+|+. +|.++..
T Consensus 3 ~~~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-- 66 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQ--------------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-- 66 (208)
T ss_dssp CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH--
Confidence 56778999999999999 999999999999999999999999 9999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
.|++++|+ ..|+++++++|+++.+|+++|.++...|++ ++|+.+|+++++++|+++.++++
T Consensus 67 --~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~ 127 (208)
T 3urz_A 67 --NRNYDKAY-------LFYKELLQKAPNNVDCLEACAEMQVCRGQE----------KDALRMYEKILQLEADNLAANIF 127 (208)
T ss_dssp --TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --CCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999 889999999999999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHhhhhhh--hhcCcCCCCCCCcch-HHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 301 LGTVLYGLAEDTL--RTGGTVNPREVSPNE-LYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 301 lg~~~~~~g~~~~--a~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
+|.+++..|+... +...+.......+.. .+......+......+.+...+.+++.+.+.
T Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999988875433 233333344333332 1222233334455666666777777766543
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=1.7e-17 Score=146.65 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=154.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HH
Q 017806 134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HD 207 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 207 (365)
++..|++++|+..|+++++.+|++ ..+++.+|.++..+|+ +++|+..|++++++.|++ +.
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--------------YLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHHHCCCCchhHH
Confidence 466789999999999999999999 9999999999999999 999999999999998854 67
Q ss_pred HHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHhcC
Q 017806 208 AFYNWAIAISDRA----KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQELSA 266 (365)
Q Consensus 208 ~~~~lg~~~~~~~----~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~~ 266 (365)
+++.+|.++.... ...|++++|+ ..|+++++.+|++..++ +++|.+|...|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~-------~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAI-------EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHH-------HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHH-------HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8999999986400 0046677777 88999999999987666 889999999999
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhc
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 343 (365)
+ ++|+..|++++...|+ .+.+++.+|.++..+|+...+.. ....+..+..+|.++...
T Consensus 164 ~----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~---------~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 164 Y----------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRAR---------QPERYRRAVELYERLLQI 224 (261)
T ss_dssp H----------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGG---------HHHHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhc---------ccchHHHHHHHHHHHHHH
Confidence 6 9999999999999998 56799999999999975532110 124568888899999999
Q ss_pred CccHHHHHHHHHhhhh
Q 017806 344 KPSYSVYSSALRLVRS 359 (365)
Q Consensus 344 ~~~~~~~~~al~~~~~ 359 (365)
.|+...+..+...+..
T Consensus 225 ~p~~~~~~~a~~~l~~ 240 (261)
T 3qky_A 225 FPDSPLLRTAEELYTR 240 (261)
T ss_dssp CTTCTHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHH
Confidence 9998777777665544
No 68
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.77 E-value=3.1e-19 Score=164.34 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=136.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----------
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------- 205 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 205 (365)
.+++++|+..|++++..+|.++.+++++|.+++..|+ |++|+.+|++++.++|++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK--------------YKQALLQYKKIVSWLEYESSFSNEEAQKA 191 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCCCCCSHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 4677889999999999999999999999999999999 999999999999999998
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 206 ----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
..+|+++|.++.. +|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+
T Consensus 192 ~~~~~~~~~nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~ 250 (336)
T 1p5q_A 192 QALRLASHLNLAMCHLK----LQAFSAAI-------ESCNKALELDSNNEKGLSRRGEAHLAVNDF----------ELAR 250 (336)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHH
Confidence 6999999999999 99999999 789999999999999999999999999996 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
.+|+++++++|++..++.+++.++..+|+..++
T Consensus 251 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 251 ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987655
No 69
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=165.29 Aligned_cols=203 Identities=14% Similarity=0.077 Sum_probs=147.5
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHh------CCC
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIER------NPE 156 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~------~p~ 156 (365)
....+++.+|.++. ..|++++|+.+|++++...|. .+...|++++|+.+|++++.+ .|.
T Consensus 7 ~~~~~l~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLC-KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45667889999995 999999999999999998764 345569999999999999887 455
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCC-----
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGR----- 225 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~----- 225 (365)
...++..+|.++...|+ +++|+.+|++++.+.|.. ..++.++|.++.. .|+
T Consensus 86 ~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~ 147 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGN--------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCP 147 (406)
T ss_dssp HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC--
T ss_pred HHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCccccc
Confidence 67899999999999999 999999999999987653 5689999999999 999
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------------
Q 017806 226 ---------------TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------ 272 (365)
Q Consensus 226 ---------------~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------ 272 (365)
+++|+..+++++..+.+. ...+....++.++|.++...|+++.|..
T Consensus 148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 666665544433332221 1133345677777777777777633332
Q ss_pred ------------hhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 273 ------------KQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 273 ------------~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
..|++++|+.+|++++.+.+.. ..++.++|.++...|+..++...+.
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3344566666666666665444 5566666666666666655554443
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=154.66 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=142.1
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhcc--------Chh----------hhhhhhhHHHHHHHHHHHHHh--
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGV--------DEE----------GRSRQRILTFAAKRYANAIER-- 153 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~--------~~~----------~~~~~~~~~~A~~~~~~al~~-- 153 (365)
.+|....+++.+|.++. ..|++++|+.+|++++.+ .+. .+...|++++|+.+|++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYA-SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45677889999999995 999999999999999985 332 355669999999999999988
Q ss_pred ------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Q 017806 154 ------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISDR 219 (365)
Q Consensus 154 ------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~ 219 (365)
+|....++..+|.++...|+ +++|+.+|++++++. |....++.++|.++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~- 165 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGK--------------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN- 165 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-
Confidence 46678899999999999999 999999999999884 5567889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.|++++|+..|++++..+.+.... +|....++.++|.++...|++ ++|+.+|++++.+
T Consensus 166 ---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~ 224 (311)
T 3nf1_A 166 ---QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF----------KQAETLYKEILTR 224 (311)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHH
Confidence 999999996666665554432211 566778999999999999996 9999999999975
No 71
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=4.9e-18 Score=153.08 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=133.8
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCCC------H
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPED------Y 158 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~~------~ 158 (365)
.+...|.++ ...|++++|+..|.+++.+.+. .+...|++++|+.+|++++++.|.. .
T Consensus 39 ~~~~a~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 39 LCVQAATIY-RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHH-HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345557778 5899999999999999987421 3455699999999999999998754 5
Q ss_pred HHHHHHHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 159 DALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 159 ~~~~~lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.++.++|.+|... |+ +++|+.+|++++++.|.+ ..++.++|.++.. +|++++|+
T Consensus 118 ~~~~~lg~~~~~~lg~--------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~- 178 (292)
T 1qqe_A 118 NFKFELGEILENDLHD--------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEAS- 178 (292)
T ss_dssp HHHHHHHHHHHHTTCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred HHHHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHH-
Confidence 6899999999996 99 999999999999998754 5789999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQ-------ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
..|++++++.|++.. +++++|.++..+|++ ++|+.+|++++.++|++...
T Consensus 179 ------~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 179 ------DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA----------VAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp ------HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHGGGCC-------
T ss_pred ------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCCCc
Confidence 779999998887643 689999999999996 99999999999999987654
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=6.9e-19 Score=159.33 Aligned_cols=199 Identities=15% Similarity=0.079 Sum_probs=141.7
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHh------CCCCH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIER------NPEDY 158 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~------~p~~~ 158 (365)
...++..|..+. ..|++++|+.+|++++...+. .+...|++++|+.+|++++.+ .|...
T Consensus 5 ~~~l~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLC-KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHH-HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 456788899994 999999999999999998765 245569999999999999987 45567
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCC-------
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGR------- 225 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~------- 225 (365)
.++..+|.++...|+ +++|+.+|++++++.+.. ..++..+|.++.. .|+
T Consensus 84 ~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~ 145 (338)
T 3ro2_A 84 KASGNLGNTLKVLGN--------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGP 145 (338)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSC
T ss_pred HHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchh
Confidence 899999999999999 999999999999986543 4589999999999 999
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH--------------------
Q 017806 226 -------------TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE-------------------- 272 (365)
Q Consensus 226 -------------~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~-------------------- 272 (365)
+++|+..+++++..+... ...+....++.++|.++...|+++.|..
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 666665544443333221 1123345678888888888888633322
Q ss_pred ----------hhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcC
Q 017806 273 ----------KQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 273 ----------~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
..|++++|+.+|++++.+.+.. ..++.++|.++...|+..++...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2344455555555555554333 44555555555555555544443
No 73
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=3.1e-18 Score=138.87 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+-.+-..|++++.++|+++.+++++|.++.. .|++++|+ ..|++++.++|+++.+|+++|.+|..+|++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~----~g~~~eA~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYN----KGRIEEAE-------VFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHccH
Confidence 5556667888899999999999999999999 99999999 889999999999999999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccH
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 347 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 347 (365)
++|+.+|++++.++|+++.+|+++|.++..+|+. ..|..+|.++..+.|+.
T Consensus 87 ----------~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~-------------------~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 87 ----------QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP-------------------LKAKECFELVIQHSNDE 137 (151)
T ss_dssp ----------HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHCCCH
T ss_pred ----------HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-------------------HHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999966 45667778888888888
Q ss_pred HHHHHHHHhhh
Q 017806 348 SVYSSALRLVR 358 (365)
Q Consensus 348 ~~~~~al~~~~ 358 (365)
+...++-.++.
T Consensus 138 ~~~~~A~~ll~ 148 (151)
T 3gyz_A 138 KLKIKAQSYLD 148 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666654443
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=2.2e-17 Score=142.91 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=145.7
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCHH---HH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDYD---AL 161 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 161 (365)
.+.+++.+|..++ ..|++++|+..|++++...|. +++..|++++|+..|+++++.+|++.. ++
T Consensus 3 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKL-QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 4678899999995 999999999999999987764 356679999999999999999999864 89
Q ss_pred HHHHHHHHHhcCccc----cCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVS----LDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YNWAIAISDRA 220 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~----a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~ 220 (365)
+.+|.++..++...- ..+......|++++|+..|+++++..|++..++ ..+|.++..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-- 159 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-- 159 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999987642100 012222335679999999999999999987554 578888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
.|++.+|+ ..|+++++..|+++ .+++.+|.++.++|++ ++|+..|++++...|++.
T Consensus 160 --~~~~~~A~-------~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~----------~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 160 --RGAWVAVV-------NRVEGMLRDYPDTQATRDALPLMENAYRQMQMN----------AQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HTCHHHHH-------HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHCCSCCC
T ss_pred --cCcHHHHH-------HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhCCCch
Confidence 99999999 78999999999986 7899999999999996 999999999998888753
No 75
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.75 E-value=5.6e-18 Score=135.75 Aligned_cols=131 Identities=15% Similarity=0.053 Sum_probs=118.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
..|++++.++|++..+++.+|.++...|+ +++|+..|++++.++|+++.+|+++|.++.. .|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g 66 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK--------------WDDAQKIFQALCMLDHYDARYFLGLGACRQS----LG 66 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHcc--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----Hh
Confidence 46788889999999999999999999999 9999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
++++|+ .+|++++.++|+++.+++++|.+|..+|++ ++|+.+|++++.++|+++........+
T Consensus 67 ~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 67 LYEQAL-------QSYSYGALMDINEPRFPFHAAECHLQLGDL----------DGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred hHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999 889999999999999999999999999996 999999999999999988776666666
Q ss_pred HHHhhh
Q 017806 305 LYGLAE 310 (365)
Q Consensus 305 ~~~~g~ 310 (365)
...++.
T Consensus 130 ~~~l~~ 135 (142)
T 2xcb_A 130 GAMLEA 135 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 76
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.75 E-value=3.9e-17 Score=160.73 Aligned_cols=136 Identities=17% Similarity=0.036 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
|++++|+..|+++++.+|++..+++++|.++...|+ +++|+..|+++++++|++..+++++|.++.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD--------------TTAGEMAVQRGLALHPGHPEAVARLGRVRW 68 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHTTSTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666 666666666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
. .|++++|+ ..|+++++++|+++.+++++|.+|..+|++ ++|+..|+++++++|++..+
T Consensus 69 ~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~ 127 (568)
T 2vsy_A 69 T----QQRHAEAA-------VLLQQASDAAPEHPGIALWLGHALEDAGQA----------EAAAAAYTRAHQLLPEEPYI 127 (568)
T ss_dssp H----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHH
T ss_pred H----CCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHH
Confidence 6 66666666 555556666666666666666666666664 66666666666666666666
Q ss_pred HHHHHHHHHHh
Q 017806 298 IYNLGTVLYGL 308 (365)
Q Consensus 298 ~~~lg~~~~~~ 308 (365)
+.++|.++..+
T Consensus 128 ~~~l~~~~~~~ 138 (568)
T 2vsy_A 128 TAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 66666666665
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.75 E-value=6.8e-17 Score=145.83 Aligned_cols=214 Identities=7% Similarity=-0.059 Sum_probs=147.3
Q ss_pred hccCCCchHHHHhcCCChhHhhh--cHHHHHHHHHHhhccChhh----------h----hhh---hhHHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAE--QNNAAMELINSVTGVDEEG----------R----SRQ---RILTFAAKRYANAIE 152 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g--~~~~A~~~~~~al~~~~~~----------~----~~~---~~~~~A~~~~~~al~ 152 (365)
+..+|++..+|+.+|.++ ...| ++++++.++..++..+|.. . ... +++++++.++.++++
T Consensus 60 L~~nP~~~taWn~R~~~L-~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 60 INELASHYTIWIYRFNIL-KNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHCTTCHHHHHHHHHHH-HTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHH-HHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 678888899999999888 4777 7777777777777777661 1 112 466777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE--EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
.+|.+..+|++++.++..++. ++ +++++++++++++|.|..+|..++.++.. .|+.. -.
T Consensus 139 ~~pkny~aW~~R~~vl~~l~~--------------~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~----l~~~~-~~ 199 (306)
T 3dra_A 139 SDPKNHHVWSYRKWLVDTFDL--------------HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS----KKHLA-TD 199 (306)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC--------------TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS----SGGGC-CH
T ss_pred hCCCCHHHHHHHHHHHHHhcc--------------cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccccc-hh
Confidence 777777777777777777776 66 77777777777777777777777777766 65510 01
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Q 017806 231 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ---FDFHRAIYNLGTVLYG 307 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~ 307 (365)
..++.++..+.+++..+|++..+|++++.++...|+. ++....++.+++.++ |.++.++..++.++..
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS---------ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC---------GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC---------hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 1233333667777777777777777777777777775 344555666666665 6777777777777775
Q ss_pred hhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHh-cCccHHHHHHH
Q 017806 308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA-LKPSYSVYSSA 353 (365)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~-~~~~~~~~~~a 353 (365)
.|+. ..|..++..+.. ++|-...|..-
T Consensus 271 ~~~~-------------------~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 271 QKKY-------------------NESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp TTCH-------------------HHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cCCH-------------------HHHHHHHHHHHhccChHHHHHHHH
Confidence 5533 445566677665 78887777654
No 78
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.75 E-value=5.6e-18 Score=136.56 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHHHhcCC
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHD-----AFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~~~~~g~ 225 (365)
...+.++|..++..|+ |++|+.+|+++|+++|+ +.. +|+++|.++.. +|+
T Consensus 11 a~~~~~~G~~l~~~g~--------------~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr 72 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGE--------------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRS 72 (159)
T ss_dssp HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCC
Confidence 5568999999999999 99999999999999999 544 99999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQAL----NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~----~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (365)
|++|+..|++|+..|.++++++|+++.+| +++|.++..+|++ ++|+.+|+++++++|++..+...+
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~----------eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------AEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH----------HHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999999999999999999 9999999999996 999999999999999998777777
Q ss_pred HHHHHHhh
Q 017806 302 GTVLYGLA 309 (365)
Q Consensus 302 g~~~~~~g 309 (365)
..+.....
T Consensus 143 ~~~~~~~~ 150 (159)
T 2hr2_A 143 ERMMEVAI 150 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655444
No 79
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.74 E-value=4e-18 Score=141.74 Aligned_cols=147 Identities=10% Similarity=-0.026 Sum_probs=125.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|+++++.+|+++.+++.+|.++...|+ +++|+.+|++++.++| ++..+..++.
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------------~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--------------FELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--------------HHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 456788999999999999999999999999999999999 9999999999999999 8887776665
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.... .+...+|+ ..|+++++.+|+++.+++++|.++...|++ ++|+..|+++++.+|++
T Consensus 82 ~~~~~---~~~~~~a~-------~~~~~al~~~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 82 LELHQ---QAAESPEL-------KRLEQELAANPDNFELACELAVQYNQVGRD----------EEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHH---HHTSCHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTT
T ss_pred HHHHh---hcccchHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCccc
Confidence 54320 23333455 789999999999999999999999999996 99999999999999876
Q ss_pred --HHHHHHHHHHHHHhhhhhhhhc
Q 017806 295 --HRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 295 --~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
+.++.++|.++..+|+..++..
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHH
Confidence 6699999999999997764433
No 80
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=1.9e-16 Score=140.56 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=179.7
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------hhhh----hhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------GRSR----QRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
+|+++.+++.+|.++. ..|++++|+.+|++++..... .+.. .+++++|+.+|+++++.+ ++.+++
T Consensus 2 ~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSY-KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp ---CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCCChHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 5788999999999995 999999999999999985532 3455 789999999999999985 899999
Q ss_pred HHHHHHHH----hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 163 NWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 163 ~lg~~~~~----~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
++|.++.. .++ +++|+.+|+++++.+ ++.+++++|.++.......+++++|+ .
T Consensus 79 ~lg~~~~~g~~~~~~--------------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~-------~ 135 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQN--------------TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAV-------E 135 (273)
T ss_dssp HHHHHHHHTSSSCCC--------------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH-------H
T ss_pred HHHHHHhCCCCcccC--------------HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHH-------H
Confidence 99999999 999 999999999999984 89999999999986111158999999 6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhh
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG----LAE 310 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 310 (365)
+|+++++.+ ++.+++++|.+|.. .+++ ++|+.+|+++++. +++.+++++|.++.. .++
T Consensus 136 ~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~----------~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 136 YFTKACDLN--DGDGCTILGSLYDAGRGTPKDL----------KKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc
Confidence 788888765 68999999999999 8886 9999999999988 468999999999999 999
Q ss_pred hhhhhcCcCCCCCCCcchHHHHHHHHHHH----HHhcCccHHHHHHHHHh
Q 017806 311 DTLRTGGTVNPREVSPNELYSQSAIYIAA----AHALKPSYSVYSSALRL 356 (365)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~----a~~~~~~~~~~~~al~~ 356 (365)
..++...+..+....+...+......+.. ....+.+...+..++.+
T Consensus 202 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 202 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 98888777666666555444444444444 44444455555555543
No 81
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=3.4e-17 Score=161.15 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=126.3
Q ss_pred hhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCc
Q 017806 113 AEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 182 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~ 182 (365)
.|++++|+..|++++..+|. .+...|++++|+.+|+++++++|++..+++++|.++..+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------- 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------- 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC---------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---------
Confidence 46777888888888777765 34556899999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
+++|+.+|+++++++|++..+++++|.++.. .|++++|+ ..|+++++++|++..++.++|.++.
T Consensus 73 -----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 73 -----HAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAA-------AAYTRAHQLLPEEPYITAQLLNWRR 136 (568)
T ss_dssp -----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 7899999999999999999999999
Q ss_pred Hh---cCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 263 EL---SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 263 ~~---~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.+ |++ ++|+..|+++++.+|++...+..++
T Consensus 137 ~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 137 RLCDWRAL----------DVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HTTCCTTH----------HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HhhccccH----------HHHHHHHHHHHhcCCcccChHHHhC
Confidence 99 775 9999999999999998876665554
No 82
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.9e-17 Score=125.89 Aligned_cols=118 Identities=16% Similarity=0.025 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
|..+..|+.+|.++...|+ +++|+.+|+++++++|+++.+|+++|.++.. .|++++|+
T Consensus 1 p~~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~---- 58 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSD--------------WPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAI---- 58 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred CchHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHH----
Confidence 3457789999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYG 307 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~ 307 (365)
..|+++++++|+++.+|+++|.++..+|++ ++|+..|++++.++ |++..++..++.+...
T Consensus 59 ---~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 59 ---ADCNKAIEKDPNFVRAYIRKATAQIAVKEY----------ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp ---HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCCcHHHHHHHHHHHHHHhCH----------HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 889999999999999999999999999996 99999999999999 9999999999888754
No 83
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.73 E-value=2.4e-17 Score=148.21 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=135.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|+++++.+|++..+++.+|.++...|+ +++|+..|++++..+|+....+...+.
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--------------SEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--------------HHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--------------HHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 456889999999999999999999999999999999999 999999999999999988888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.+.. .++.++|+ ..|++++..+|+++.+++++|.+|...|++ ++|+..|+++++.+|++
T Consensus 194 ~l~~----~~~~~~a~-------~~l~~al~~~P~~~~~~~~la~~l~~~g~~----------~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 194 ELLX----QAADTPEI-------QQLQQQVAENPEDAALATQLALQLHQVGRN----------EEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHH----HHTSCHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTG
T ss_pred HHHh----hcccCccH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhccccc
Confidence 8888 88888888 789999999999999999999999999996 99999999999999999
Q ss_pred --HHHHHHHHHHHHHhhhhhhhh
Q 017806 295 --HRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 295 --~~~~~~lg~~~~~~g~~~~a~ 315 (365)
..++.++|.++..+|+...+.
T Consensus 253 ~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTTCHHH
T ss_pred ccchHHHHHHHHHHHcCCCCcHH
Confidence 899999999999999765433
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=1.1e-17 Score=156.39 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=173.5
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC-------C
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE-------D 157 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~-------~ 157 (365)
.++.+|.++. ..|++++|+.+|++++.+... .+...|++++|+.+|.+++++.+. .
T Consensus 105 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 105 FNFFRGMYEL-DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 3455899995 999999999999999987211 355669999999999999998543 3
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..++.++|.++..+|+ +++|+.+|++++++.+.. ..+++++|.++.. +|++++|+.
T Consensus 184 ~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~ 245 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQ--------------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 5689999999999999 999999999999985543 3589999999999 999999996
Q ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-----FDFHRAIYNLGTVL 305 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~ 305 (365)
.|++|+..++.. .+ |..+.+++++|.++..+|++ ++|+.+|++++.+. |.....+..+|.++
T Consensus 246 ~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 246 YFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKI----------DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 655555544431 35 77899999999999999996 99999999999983 44444567799999
Q ss_pred HHhhh---hhhhhcCcCCCCCC-CcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 306 YGLAE---DTLRTGGTVNPREV-SPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 306 ~~~g~---~~~a~~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
...|+ ...+.......... .....+...+.++...+..+.+...+..++.+.+.+
T Consensus 314 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred hCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 88886 33333332222110 111234555566666677777777777777776654
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=2.5e-16 Score=136.22 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=127.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH---
Q 017806 134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--- 207 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 207 (365)
++..|++++|+..|+++++.+|.+ ..+++.+|.++..+|+ +++|+..|+++++++|++..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCcHHH
Confidence 466799999999999999999986 4789999999999999 99999999999999999764
Q ss_pred HHHHHHHHHHHHH--------------HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HH
Q 017806 208 AFYNWAIAISDRA--------------KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NN 256 (365)
Q Consensus 208 ~~~~lg~~~~~~~--------------~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~ 256 (365)
+++.+|.++.... ...|++++|+ ..|+++++.+|++..++ ..
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-------~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF-------SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHH-------HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH-------HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999987600 0024555555 88999999999987655 57
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhhhhhh
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~a 314 (365)
+|.+|...|++ ++|+..|+++++..|+++ .+++.+|.++..+|+...+
T Consensus 153 ~a~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 153 VAEYYTERGAW----------VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHTCH----------HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCcH----------HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 78888888885 999999999999999986 6899999999999977533
No 86
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.72 E-value=2.1e-16 Score=129.49 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=111.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
++.++..++.+|.++...|+ |++|+.+|+++++++|+++.+|+++|.++.. .|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~--- 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE--------------YSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAA--- 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred hhhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHH---
Confidence 35567889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
.+|+++++++|+++.+|+++|.+|..+|++ ++|+.+|+++++++|++..++++++.+.....
T Consensus 66 ----~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 66 ----EDAELATVVDPKYSKAWSRLGLARFDMADY----------KGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp ----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 889999999999999999999999999996 99999999999999999887777766655444
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.71 E-value=8.4e-17 Score=133.43 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=119.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+...|++++|+..|+++++.+|.+..+|+.+|.++...|+ +++|+.+|++++.++|+++.++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~la 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--------------YSNSLLAYRQALQLRGENAELYAALA 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3556889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HH-HHHHHHhcCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 214 IA-ISDRAKMRGRT--KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 214 ~~-~~~~~~~~g~~--~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+ +.. .|++ ++|+ ..|+++++.+|+++.+++++|.++...|++ ++|+..|++++.+
T Consensus 86 ~~l~~~----~~~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~ 144 (177)
T 2e2e_A 86 TVLYYQ----ASQHMTAQTR-------AMIDKALALDSNEITALMLLASDAFMQANY----------AQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHH----TTTCCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHT
T ss_pred HHHHHh----cCCcchHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhh
Confidence 99 778 9998 9999 779999999999999999999999999996 9999999999999
Q ss_pred CCCCHHHHHHH
Q 017806 291 QFDFHRAIYNL 301 (365)
Q Consensus 291 ~p~~~~~~~~l 301 (365)
+|++......+
T Consensus 145 ~p~~~~~~~~~ 155 (177)
T 2e2e_A 145 NSPRINRTQLV 155 (177)
T ss_dssp CCTTSCHHHHH
T ss_pred CCCCccHHHHH
Confidence 99886544333
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.70 E-value=2.5e-16 Score=139.14 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=116.0
Q ss_pred hhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----
Q 017806 134 RSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---- 201 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---- 201 (365)
+...|++++|+.+|++++++ +|....++.++|.++...|+ +++|+.+|++++.+
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------------YKEAEPLCKRALEIREKV 118 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHHHH
Confidence 34457777777777777766 36667899999999999999 99999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchhHHhhhH
Q 017806 202 ----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTI 276 (365)
Q Consensus 202 ----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 276 (365)
+|....++.++|.++.. .|++++|+..|++++..+.+.... +|....++.++|.++..+|++
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------- 185 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY--------- 185 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH---------
T ss_pred cCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH---------
Confidence 46778899999999999 999999997766666655443221 566678999999999999996
Q ss_pred HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHh
Q 017806 277 VRTAISKFRAAIQL---------QFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 277 ~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~ 308 (365)
++|+.+|++++.+ .+.....+..++.+....
T Consensus 186 -~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (283)
T 3edt_B 186 -QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225 (283)
T ss_dssp -HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC
Confidence 9999999999987 344445555555554433
No 89
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=3.1e-15 Score=135.84 Aligned_cols=227 Identities=14% Similarity=0.069 Sum_probs=176.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhc----------HHHHHHHHHHhhccChhhh----------hhhh--hHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQ----------NNAAMELINSVTGVDEEGR----------SRQR--ILTFAAKRYAN 149 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~----------~~~A~~~~~~al~~~~~~~----------~~~~--~~~~A~~~~~~ 149 (365)
+..+|++..+|+.++.++ ...+. +++++.++..++..+|..+ ...+ .+++++.++.+
T Consensus 57 L~~nP~~ytaWn~Rr~iL-~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 135 (331)
T 3dss_A 57 LGANPDFATLWNCRREVL-QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 135 (331)
T ss_dssp HTTCTTCHHHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHH-HHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 789999999999999999 57776 6899999999999998831 1224 58999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 150 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 150 al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
+++.+|.+..+|.+++.+....|. .++++++++.++++.+|.|..+|++++.++.. .+....+
T Consensus 136 ~l~~dprNy~AW~~R~~vl~~l~~-------------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~----l~~~~~~ 198 (331)
T 3dss_A 136 FLEADERNFHCWDYRRFVAAQAAV-------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQ----LHPQPDS 198 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----HSCCC--
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCc-------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hhhcccc
Confidence 999999999999999999999987 04899999999999999999999999999988 6321110
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 230 -------EELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (365)
Q Consensus 230 -------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (365)
...++.++.++.+++..+|++..+|+.+..++... |.........+.++++++++.+++++.|++.. ..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w--~l~ 276 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW--CLL 276 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH--HHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch--HHH
Confidence 13456666999999999999999998665555544 32211233456789999999999999999954 444
Q ss_pred HHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 302 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 302 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
+.++...+-. +...+.....++.++..+||-...+..
T Consensus 277 ~~~~~~~~~~--------------~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 277 TIILLMRALD--------------PLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHHHHHHC--------------TTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHhhc--------------ccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 4444432211 111346788899999999998765543
No 90
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=148.61 Aligned_cols=198 Identities=15% Similarity=0.080 Sum_probs=160.1
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhh-------------------
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRI------------------- 139 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~------------------- 139 (365)
.+....++..+|.++. ..|++++|+.+|.+++.+.+. .+...|+
T Consensus 83 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 4556788999999994 999999999999999988654 3455689
Q ss_pred -HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH------
Q 017806 140 -LTFAAKRYANAIER------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH------ 206 (365)
Q Consensus 140 -~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~------ 206 (365)
+++|+.+|.+++.+ .|....++.++|.++...|+ +++|+.+|++++++.+...
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB--------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999987 34456789999999999999 9999999999999866543
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++.++|.++.. .|++++|+..+++++...... ...+....++.++|.++...|++ ++|+.+|++
T Consensus 228 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~ 292 (406)
T 3sf4_A 228 RAYSNLGNAYIF----LGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLK 292 (406)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcH----------HHHHHHHHH
Confidence 389999999999 999999995555554443321 00011277999999999999996 999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 287 AIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 287 al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
++.+.+.. ..++.++|.++...|+...+...+..++
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99986544 6789999999999998877766544333
No 91
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=5.4e-17 Score=152.32 Aligned_cols=221 Identities=15% Similarity=0.066 Sum_probs=140.5
Q ss_pred ccCCCch----HHHHhcCCChhHhhhcHHHHHHHHHHhhccC------hh----------hhhhhhhHHHHHHHHHHHHH
Q 017806 93 EGEDSVT----DASFSQGNTPHQLAEQNNAAMELINSVTGVD------EE----------GRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 93 ~~~~~~~----~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~------~~----------~~~~~~~~~~A~~~~~~al~ 152 (365)
...|+++ .+++.+|.++. ..|++++|+.+|++++.+. +. .+...|++++|+.+|+++++
T Consensus 76 ~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 76 QAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455554 46777777774 7777777777777777662 21 23444666666666666666
Q ss_pred h------CCCCHHHHHHHHHHHHHhcC-----------------cccc--------------------------CCCCch
Q 017806 153 R------NPEDYDALYNWALVLQESAD-----------------NVSL--------------------------DSTSPS 183 (365)
Q Consensus 153 ~------~p~~~~~~~~lg~~~~~~~~-----------------~~~a--------------------------~~~~~~ 183 (365)
+ .|....++.++|.++...|+ +..+ .+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 234 (411)
T 4a1s_A 155 LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY 234 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5 34445566666666666655 3222 111112
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 184 KDALLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 184 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
..|++++|+.+|++++.+.+... .++.++|.++.. .|++++|+..|++++...... ...+....++.++
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 309 (411)
T 4a1s_A 235 LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVEL-GEREVEAQSCYSL 309 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 22447777777777777655432 267777777777 777777775544444433321 0001126788889
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHH
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 331 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 331 (365)
|.++...|++ ++|+.+|++++.+.+.. ..++..+|.++..+|+..
T Consensus 310 a~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~------------------- 360 (411)
T 4a1s_A 310 GNTYTLLHEF----------NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE------------------- 360 (411)
T ss_dssp HHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-------------------
T ss_pred HHHHHHcCCH----------HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH-------------------
Confidence 9999988885 99999999999885432 568899999999999664
Q ss_pred HHHHHHHHHHhcCccHH
Q 017806 332 QSAIYIAAAHALKPSYS 348 (365)
Q Consensus 332 ~a~~~~~~a~~~~~~~~ 348 (365)
.+..++.++..+.+...
T Consensus 361 ~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 361 RALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 45556666666655543
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.69 E-value=6.6e-15 Score=132.82 Aligned_cols=190 Identities=9% Similarity=0.005 Sum_probs=157.9
Q ss_pred hhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CccccCCCCchhhhHHHH
Q 017806 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA--DNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~a~~~~~~~~~~~~~ 190 (365)
..+|.+++.++...+... ...++|+.++.++|.++|++..+|+.+|.++..++ + +++
T Consensus 29 ~~~y~~~~~~~~a~~~~~-------e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~--------------~~e 87 (306)
T 3dra_A 29 DEDYKQIMGLLLALMKAE-------EYSERALHITELGINELASHYTIWIYRFNILKNLPNRN--------------LYD 87 (306)
T ss_dssp CHHHHHHHHHHHHHHHTT-------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSC--------------HHH
T ss_pred CHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccccc--------------HHH
Confidence 455666777776554432 12368999999999999999999999999999999 7 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR---GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~---g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++.++.+++.++|++..+|+.++.++....... +++++++ ..+.++++.+|++..+|++++.++..++.+
T Consensus 88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL-------~~~~~~l~~~pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF-------DILEAMLSSDPKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999993211116 7888888 889999999999999999999999999986
Q ss_pred chhHHhhhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCc
Q 017806 268 VPAREKQTIVR--TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (365)
Q Consensus 268 ~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 345 (365)
+ ++++++.++++.+|.|..+|++.+.++..++... ....+.....++..+...+|
T Consensus 161 ----------~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~-------------~~~~~~eEl~~~~~aI~~~p 217 (306)
T 3dra_A 161 ----------NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA-------------TDNTIDEELNYVKDKIVKCP 217 (306)
T ss_dssp ----------TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-------------CHHHHHHHHHHHHHHHHHCS
T ss_pred ----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-------------hhhhHHHHHHHHHHHHHhCC
Confidence 7 9999999999999999999999999999887521 22346677777788888888
Q ss_pred cHHHHHHH
Q 017806 346 SYSVYSSA 353 (365)
Q Consensus 346 ~~~~~~~a 353 (365)
.+......
T Consensus 218 ~n~SaW~y 225 (306)
T 3dra_A 218 QNPSTWNY 225 (306)
T ss_dssp SCHHHHHH
T ss_pred CCccHHHH
Confidence 76654433
No 93
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-16 Score=121.29 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=115.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.|....+++.+|.++...|+ +++|+.+|++++.++|++..+++++|.++.. .|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~--- 70 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD--------------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLAL--- 70 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC--------------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHH---
T ss_pred CcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHH---
Confidence 46678899999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
..|+++++.+|+++.+++++|.++...|++ ++|+.+|++++.++|++..++..++.++...|
T Consensus 71 ----~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 71 ----KDCEECIQLEPTFIKGYTRKAAALEAMKDY----------TKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp ----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHhCCCchHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 779999999999999999999999999996 99999999999999999999999999998876
No 94
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.68 E-value=1.1e-15 Score=118.79 Aligned_cols=124 Identities=24% Similarity=0.245 Sum_probs=117.0
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.+|.+..+++.+|.++...|+ +++|+..|++++.++|++..++..+|.++.. .|++++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-- 66 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVEN--------------FEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAV-- 66 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred cchhhhHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHH--
Confidence 345677889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
..+++++..+|+++.+++.+|.++...|++ ++|+.+|++++.++|++..++..+|.++..+|+.
T Consensus 67 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 67 -----QDCERAICIDPAYSKAYGRMGLALSSLNKH----------VEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHhcCccCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 778999999999999999999999999996 9999999999999999999999999999998854
No 95
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.68 E-value=1.3e-16 Score=146.76 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=127.3
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPED---------------YDALYNWAL 166 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 166 (365)
.++++++|+..|++++...+. .++..|++++|+.+|+++++++|.+ ..+|+++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777665554 4567799999999999999999998 699999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++..+|+ +++|+.+|+++++++|+++.+++++|.++.. +|++++|+ ..|++++++
T Consensus 205 ~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~~al~l 259 (336)
T 1p5q_A 205 CHLKLQA--------------FSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELAR-------ADFQKVLQL 259 (336)
T ss_dssp HHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHH
T ss_pred HHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHH
Confidence 9999999 9999999999999999999999999999999 99999999 889999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH-HHHHHHHHHh
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTA-ISKFRAAIQL 290 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 290 (365)
+|++..++.++|.++..+|++ ++| ...|++.+..
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQ----------LAREKKLYANMFER 294 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 999999999999999999996 777 5566666643
No 96
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.68 E-value=3.9e-17 Score=156.59 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=131.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----------
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------- 205 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 205 (365)
.+++++|+..|..++..+|....+++++|.+++..|+ |++|+.+|+++++++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 312 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK--------------YMQAVIQYGKIVSWLEMEYGLSEKESKAS 312 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHhcccccCChHHHHHH
Confidence 3677889999999999999999999999999999999 999999999999999998
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 206 ----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
..+|+++|.++.. +|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+
T Consensus 313 ~~~~~~~~~nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~~g~a~~~~g~~----------~~A~ 371 (457)
T 1kt0_A 313 ESFLLAAFLNLAMCYLK----LREYTKAV-------ECCDKALGLDSANEKGLYRRGEAQLLMNEF----------ESAK 371 (457)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHccCH----------HHHH
Confidence 7999999999999 99999999 889999999999999999999999999996 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
.+|+++++++|++..++.+++.++..+++..++.
T Consensus 372 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 372 GDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999776543
No 97
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.67 E-value=2.3e-16 Score=133.51 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH----------
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---------- 206 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------- 206 (365)
.|+++++.+.+.......+.....+..+|.+++..|+ |++|+..|++++.+.|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNE--------------INEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3455555555555555555667789999999999999 9999999999999999887
Q ss_pred ------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 207 ------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 207 ------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
.+++++|.++.. .|++++|+ .+|+++++++|+++.+++++|.+|..+|++ ++|
T Consensus 83 ~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A 141 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNK----NKDYPKAI-------DHASKVLKIDKNNVKALYKLGVANMYFGFL----------EEA 141 (198)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTCH----------HHH
T ss_pred HHHHHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHcccH----------HHH
Confidence 899999999999 99999999 779999999999999999999999999996 999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 281 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
+.+|++++.++|++..++..++.++..+++..++.
T Consensus 142 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 142 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998776544
No 98
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=142.35 Aligned_cols=171 Identities=19% Similarity=0.167 Sum_probs=145.8
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC--------hh----------hhhhhhhHHHHHHHHHHHHHhC-
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD--------EE----------GRSRQRILTFAAKRYANAIERN- 154 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--------~~----------~~~~~~~~~~A~~~~~~al~~~- 154 (365)
..+....++..+|.++. ..|++++|+.+|++++... +. .+...|++++|+.+|++++++.
T Consensus 64 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 64 DHPDVATMLNILALVYR-DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp SSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 46777889999999994 9999999999999999873 22 3455699999999999999984
Q ss_pred -------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Q 017806 155 -------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 155 -------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~ 219 (365)
|....++.++|.++...|+ +++|+.+|++++.+ .|....++..+|.++..
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~- 207 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGK--------------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK- 207 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-
Confidence 6667889999999999999 99999999999998 67778899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHH------------------------------------------HHHHHhcCCCCHHHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKN------------------------------------------YEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~------------------------------------------~~~al~~~p~~~~~~~~l 257 (365)
.|++++|+..+++++.. +.+++..+|..+.++.++
T Consensus 208 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 284 (311)
T 3nf1_A 208 ---QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNL 284 (311)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 99999999888888764 333344567788999999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
|.+|..+|++ ++|+.+|++++++.|+
T Consensus 285 a~~~~~~g~~----------~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 285 GALYRRQGKF----------EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHTCH----------HHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCCH----------HHHHHHHHHHHHHhhc
Confidence 9999999996 9999999999998875
No 99
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.67 E-value=1.4e-15 Score=119.37 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
.+.++.++|.+++..|+ |++|+.+|+++++++|+++.+|+++|.++.. +|++++|+
T Consensus 7 ~A~a~~~lG~~~~~~~~--------------~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~------ 62 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKD--------------FEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECV------ 62 (127)
T ss_dssp HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred HHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHH------
Confidence 45678999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 237 TKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 237 ~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
..|+++++++|++ +.+++++|.++..+|++ ++|+.+|++++..+|+ +.....|.
T Consensus 63 -~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~----------~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 63 -QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL----------SLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp -HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred -HHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 6677777777665 35788888888888885 9999999999999885 55544443
No 100
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.67 E-value=7.8e-16 Score=123.77 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=100.6
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK---EAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~---~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
..+.++|++|+..|+++++++|+++++|+++|.++.. .++++ +|++.+++|+..|+++++++|+++.+|+++|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456779999999999999999999999999999999 77664 6677888899999999999999999999999
Q ss_pred HHHHHhcCcchh-HHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 259 LALQELSAIVPA-REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
.+|..+|.+.+. ....|+|++|+.+|++|++++|++...+..+..+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999998742111 1234667999999999999999998776666544
No 101
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=2.9e-16 Score=146.46 Aligned_cols=229 Identities=11% Similarity=0.040 Sum_probs=170.9
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC-------C
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE-------D 157 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~-------~ 157 (365)
.++.+|..+. ..|++++|+.+|++++.+... .+...|++++|+.++.+++++.+. .
T Consensus 103 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEF-DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 5778899995 999999999999999987432 355669999999999999997543 2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..++.++|.++..+|+ +++|+.+|++++++.+. ...+++++|.++.. +|++++|+.
T Consensus 182 ~~~~~~lg~~y~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~ 243 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKH--------------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 5678999999999999 99999999999997431 35689999999999 999999997
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-----FDFHRAIYNLGTVLY 306 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~ 306 (365)
.|++|+..++.. .+|..+.+++++|.++..+|++ ++|+.+|++++.+. +.....+..++.++.
T Consensus 244 ~~~~al~~~~~~--~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 244 HFQKAAKVSREK--VPDLLPKVLFGLSWTLCKAGQT----------QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh--CChhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666666655443 5677799999999999999996 99999999999984 444556667777777
Q ss_pred Hhhh---hhhhhcCcCCCCC-CCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 307 GLAE---DTLRTGGTVNPRE-VSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 307 ~~g~---~~~a~~~~~~~~~-~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
..++ ..++......... ......+...+.++...+..+.+...+..++.+.+.+
T Consensus 312 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 6665 3333322211100 0111234445555566666666666777776665543
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.67 E-value=3e-15 Score=127.47 Aligned_cols=134 Identities=11% Similarity=0.104 Sum_probs=116.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|++++ +| ++.+++++|.++...|+ +++|+.+|++++.++|+++.+++++|.
T Consensus 17 ~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--------------MTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45567777777777774 33 68899999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP----------------QALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
++.. .|++++|+ ..|+++++..|++. .+++++|.++..+|++ +
T Consensus 80 ~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~ 138 (213)
T 1hh8_A 80 LYYQ----TEKYDLAI-------KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW----------K 138 (213)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH----------H
T ss_pred HHHH----cccHHHHH-------HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH----------H
Confidence 9999 99999999 77899999888766 9999999999999996 9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 279 TAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+|+.+|++++.++|++.......+....
T Consensus 139 ~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 139 KAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp HHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999999987655554444443
No 103
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.66 E-value=1.6e-14 Score=131.10 Aligned_cols=202 Identities=9% Similarity=0.056 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhhccChhh----------hhhhhh----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Q 017806 116 NNAAMELINSVTGVDEEG----------RSRQRI----------LTFAAKRYANAIERNPEDYDALYNWALVLQESADNV 175 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~----------~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 175 (365)
.++|+.++.+++.++|.. ....+. +++++.++..++..+|.+..+|++++.++..+++
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~-- 123 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE-- 123 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS--
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc--
Confidence 348999999999999872 111122 7899999999999999999999999999999883
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 017806 176 SLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 176 ~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~-~~~A~~~~~~A~~~~~~al~~~p~~~~~~ 254 (365)
..+++++.++.++++++|.|..+|+.++.++.. .|. +++++ ..+.++++.+|.+..+|
T Consensus 124 ----------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel-------~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 124 ----------PNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEEL-------AFTDSLITRNFSNYSSW 182 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHH-------HHHHHHHHHCSCCHHHH
T ss_pred ----------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHH-------HHHHHHHHHCCCCHHHH
Confidence 018999999999999999999999999999999 998 57777 88999999999999999
Q ss_pred HHHHHHHHHhcCcchh----HHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hhhhhhhcCcCCCCCCCcchH
Q 017806 255 NNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNEL 329 (365)
Q Consensus 255 ~~lg~~~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~a~~~~~~~~~~~~~~~ 329 (365)
++++.++..+...... ....+.++++++++.+++..+|+|..+|+.+..++... |... ......+.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~---------~~~~~~~~ 253 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE---------LSVEKSTV 253 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG---------CCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc---------cchHHHHH
Confidence 9999999998432110 01225679999999999999999999998776666554 2110 00011245
Q ss_pred HHHHHHHHHHHHhcCccHHH
Q 017806 330 YSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 330 ~~~a~~~~~~a~~~~~~~~~ 349 (365)
+.....++..+..+.|++.-
T Consensus 254 l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 254 LQSELESCKELQELEPENKW 273 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhhCcccch
Confidence 66777777777777777643
No 104
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.66 E-value=2.7e-15 Score=118.45 Aligned_cols=125 Identities=17% Similarity=0.085 Sum_probs=113.8
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 152 ~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..+|.++..++.+|.++...|+ +++|+.+|++++.++|+++.+++++|.++.. .|++++|+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~- 63 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL- 63 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred CCccccHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHH-
Confidence 4568889999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-----FHRAIYNLGTVLY 306 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~ 306 (365)
..|+++++++|+++.+|+++|.++..+|++ ++|+..|++++.++|+ +..++..+..+..
T Consensus 64 ------~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 64 ------ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred ------HHHHHHHHhCchhHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999996 9999999999999988 7788888887776
Q ss_pred Hhhhh
Q 017806 307 GLAED 311 (365)
Q Consensus 307 ~~g~~ 311 (365)
.....
T Consensus 128 ~~~~~ 132 (137)
T 3q49_B 128 KRWNS 132 (137)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65533
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.66 E-value=5.7e-15 Score=115.04 Aligned_cols=125 Identities=29% Similarity=0.358 Sum_probs=117.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|+++++.+|.+..++..+|.++...|+ +++|+..|++++...|.+..+++.+|.
T Consensus 12 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGN 77 (136)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 456788999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .|++++|+ ..+++++..+|++..++..+|.++...|++ ++|+..|++++..+|++
T Consensus 78 ~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 78 AYYK----QGDYDEAI-------EYYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHSTTC
T ss_pred HHHH----hcCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHHccH----------HHHHHHHHHHHccCCCC
Confidence 9999 99999999 778889999999999999999999999996 99999999999999863
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.66 E-value=2.3e-16 Score=127.40 Aligned_cols=118 Identities=12% Similarity=0.138 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchh
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 270 (365)
+-..|++++.++|++..+++++|.++.. .|++++|+ ..|++++..+|+++.+|+++|.++..+|++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--- 71 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAH-------XVFQALCVLDHYDSRFFLGLGACRQAMGQY--- 71 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHHcCcccHHHHHHHHHHHHHHhhH---
Confidence 3457899999999999999999999999 99999999 779999999999999999999999999996
Q ss_pred HHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHH
Q 017806 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (365)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 348 (365)
++|+.+|++++.++|+++.+++++|.++..+|+.. .+..+|.++..+.|+++
T Consensus 72 -------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~-------------------~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 72 -------DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELA-------------------EAESGLFLAQELIANXP 123 (148)
T ss_dssp -------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH-------------------HHHHHHHHHHHHHTTCG
T ss_pred -------HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH-------------------HHHHHHHHHHHHCcCCC
Confidence 99999999999999999999999999999999764 45556677777666543
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1e-15 Score=150.19 Aligned_cols=149 Identities=7% Similarity=0.026 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESA--DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
+++++.++.++++.+|.+..+|++++.++..++ + ++++++++.++++++|.+..+|+.+|.++.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~--------------~~~el~~~~k~l~~d~~N~~aW~~R~~~l~ 154 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN--------------WARELELCARFLEADERNFHCWDYRRFVAA 154 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc--------------HHHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 899999999999999999999999999999999 6 799999999999999999999999999999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH----HhhhHHHHHHHHHHHHHHhCC
Q 017806 218 DRAKMRG-RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR----EKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 218 ~~~~~~g-~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~~p 292 (365)
. .| .+++++ +++.++++.+|.+..+|+++|.++..++....+. ...+.++++++++.+|+.++|
T Consensus 155 ~----l~~~~~~el-------~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 155 Q----AAVAPAEEL-------AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp H----TCCCHHHHH-------HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred H----cCCChHHHH-------HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 9 99 888888 8899999999999999999999999974431111 123668999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhh
Q 017806 293 DFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~ 313 (365)
++..+|+.++.++...++...
T Consensus 224 ~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 224 NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCSHHHHHHHHHHSCCCCCSC
T ss_pred CCccHHHHHHHHHhcCCCccc
Confidence 999999999999998886443
No 108
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.1e-15 Score=119.30 Aligned_cols=105 Identities=21% Similarity=0.137 Sum_probs=98.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++|+++.+|+++|.
T Consensus 15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 15 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------------FPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 566889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHh
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------WNSPQALNNWGLALQEL 264 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~ 264 (365)
++.. +|++++|+ ..|+++++++ |++..++..++.+...+
T Consensus 81 ~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 81 AQIA----VKEYASAL-------ETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHH----HhCHHHHH-------HHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999 99999999 7788888888 99999999998887653
No 109
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.66 E-value=7.7e-15 Score=112.93 Aligned_cols=122 Identities=29% Similarity=0.365 Sum_probs=112.3
Q ss_pred hCCCC-HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 153 RNPED-YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 153 ~~p~~-~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.+|.. ..+++.+|.++...|+ +++|+..|++++..+|.+..+++.+|.++.. .|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~- 63 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAI- 63 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred CCccccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----hCCHHHHH-
Confidence 35655 7889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
..|++++..+|++..+++++|.++...|++ ++|+.+|++++..+|++..++.++|.++...|
T Consensus 64 ------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 64 ------EYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 778888999999999999999999999996 99999999999999999999999999987654
No 110
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.65 E-value=4.5e-16 Score=140.66 Aligned_cols=188 Identities=16% Similarity=0.113 Sum_probs=151.4
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhh-------------------
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRI------------------- 139 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~------------------- 139 (365)
.+....++..+|.++. ..|++++|+.+|++++.+.+. .+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 4456788999999994 999999999999999887643 3455688
Q ss_pred -HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------H
Q 017806 140 -LTFAAKRYANAIER------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------H 206 (365)
Q Consensus 140 -~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~ 206 (365)
+++|+.+|++++.+ .+....++.++|.++...|+ +++|+.+|++++++.+.. .
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~ 223 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAER 223 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999886 34456789999999999999 999999999999886542 3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++.++|.++.. .|++++|+..+++++...... ...+....++..+|.++...|++ ++|+.+|++
T Consensus 224 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~ 288 (338)
T 3ro2_A 224 RAYSNLGNAYIF----LGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHH
Confidence 489999999999 999999996655554444331 00111277899999999999996 999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHhhhhh
Q 017806 287 AIQLQFDF------HRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 287 al~~~p~~------~~~~~~lg~~~~~~g~~~ 312 (365)
++.+.+.. ..++..+|.++...|+..
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99885532 558889999999998664
No 111
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.65 E-value=2.1e-15 Score=123.31 Aligned_cols=121 Identities=17% Similarity=0.056 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------------------CPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~ 219 (365)
+..+..+|..++..|+ |++|+.+|++++.+ +|.+..+|+++|.++..
T Consensus 11 a~~~~~~G~~~~~~~~--------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~- 75 (162)
T 3rkv_A 11 VEALRQKGNELFVQKD--------------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN- 75 (162)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 5678999999999999 99999999999999 77788999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH-HHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RAI 298 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~ 298 (365)
+|++++|+ .+++++++++|+++.+|+++|.+|..+|++ ++|+..|++++.++|++. .+.
T Consensus 76 ---~~~~~~A~-------~~~~~al~~~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~ 135 (162)
T 3rkv_A 76 ---IGDLHEAE-------ETSSEVLKREETNEKALFRRAKARIAAWKL----------DEAEEDLKLLLRNHPAAASVVA 135 (162)
T ss_dssp ---HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCGGGHHHHH
T ss_pred ---cCcHHHHH-------HHHHHHHhcCCcchHHHHHHHHHHHHHhcH----------HHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999 889999999999999999999999999996 999999999999999999 778
Q ss_pred HHHHHHHHHhhhhhh
Q 017806 299 YNLGTVLYGLAEDTL 313 (365)
Q Consensus 299 ~~lg~~~~~~g~~~~ 313 (365)
..++.+...+.+...
T Consensus 136 ~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 136 REMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887775543
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.65 E-value=1.8e-15 Score=135.95 Aligned_cols=168 Identities=12% Similarity=0.000 Sum_probs=150.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
-|.+...++.+|..+...|+ +++|+..|++++.++|+++.+++++|.++.. .|++++|+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~--- 171 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESN--------------YTDALPLLXDAWQLSNQNGEIGLLLAETLIA----LNRSEDAE--- 171 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred cCCchhhHHHHHHHHHhCCC--------------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHH----CCCHHHHH---
Confidence 48999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
..|++++..+|+....+...+..+...++. ++|+..|++++..+|+++.+++++|.++...|+...
T Consensus 172 ----~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~----------~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~ 237 (287)
T 3qou_A 172 ----AVLXTIPLQDQDTRYQGLVAQIELLXQAAD----------TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEE 237 (287)
T ss_dssp ----HHHTTSCGGGCSHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHhCchhhcchHHHHHHHHHHHHhhccc----------CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence 779999999998888888888889999987 899999999999999999999999999999999998
Q ss_pred hhcCcCCCCCCCcch----HHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 314 RTGGTVNPREVSPNE----LYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 314 a~~~~~~~~~~~~~~----~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
+...+..++..+|+. .+......|...+..++....|.+++..
T Consensus 238 A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 238 ALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 888777776666543 5677777778888888888888877754
No 113
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.65 E-value=6.4e-16 Score=136.49 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=145.5
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC--------hh----------hhhhhhhHHHHHHHHHHHHHh--
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD--------EE----------GRSRQRILTFAAKRYANAIER-- 153 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--------~~----------~~~~~~~~~~A~~~~~~al~~-- 153 (365)
..|..+.+++.+|.++. ..|++++|+.+|++++.+. +. .+...|++++|+.+|.+++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 38 DHPDVATMLNILALVYR-DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp SSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34677889999999994 9999999999999999773 32 355669999999999999998
Q ss_pred ------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Q 017806 154 ------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 154 ------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~ 219 (365)
+|....++.++|.++...|+ +++|+.+|++++.+ .|....++.++|.++..
T Consensus 117 ~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 181 (283)
T 3edt_B 117 KVLGKFHPDVAKQLNNLALLCQNQGK--------------AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK- 181 (283)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-
T ss_pred HHcCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-
Confidence 57778899999999999999 99999999999999 77778999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH------------------------------------------hcCCCCHHHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAV------------------------------------------QLNWNSPQALNNW 257 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al------------------------------------------~~~p~~~~~~~~l 257 (365)
.|++++|+..+++++....... ...|..+.++..+
T Consensus 182 ---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 182 ---QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999988888777644321 1235567799999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
|.+|..+|++ ++|+.+|++++++.
T Consensus 259 a~~~~~~g~~----------~~A~~~~~~al~~~ 282 (283)
T 3edt_B 259 GALYRRQGKL----------EAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHTTCH----------HHHHHHHHHHHTTC
T ss_pred HHHHHHcCCH----------HHHHHHHHHHHHhh
Confidence 9999999996 99999999999763
No 114
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.65 E-value=2.9e-15 Score=120.42 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=93.6
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
.+.+.|++|+..|+++++++|+++++|+++|.++..++++... ....+.+++|+.+|+++|+++|++..+|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g----~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI----SDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchh----hhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4557899999999999999999999999999999999872111 011233679999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
+|........++.++.+.|++|+++|++|++++|++..+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 999821112366777788888889999999999987543
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.65 E-value=5e-16 Score=128.93 Aligned_cols=167 Identities=11% Similarity=-0.041 Sum_probs=139.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
+|...+.++.+|.++...|+ +++|+..|+++++++|+++.+++++|.++.. .|++++|+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~--- 60 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE--------------HAQALNVIQTLSDELQSRGDVKLAKADCLLE----TKQFELAQ--- 60 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC--------------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----CCCHHHHH---
Confidence 45555678899999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQ-ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
..|++++..+| ++..+..++.+.. ..+.. .+|+..|++++.++|+++.+++++|.++...|+..
T Consensus 61 ----~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 125 (176)
T 2r5s_A 61 ----ELLATIPLEYQ-DNSYKSLIAKLELHQQAAE----------SPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125 (176)
T ss_dssp ----HHHTTCCGGGC-CHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHhhhccC-ChHHHHHHHHHHHHhhccc----------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Confidence 77999999999 8887777775533 33333 56899999999999999999999999999999999
Q ss_pred hhhcCcCCCCCCCcc----hHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 313 LRTGGTVNPREVSPN----ELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 313 ~a~~~~~~~~~~~~~----~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
++...+..++..+|. ..+......+...+..+++...|.+++..
T Consensus 126 ~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 126 EALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 998887777777664 25666667778888888888888877653
No 116
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.64 E-value=2.4e-15 Score=116.98 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.++.+|.++...|+ +++|+..|+++++++|+++.+|+.+|.++.. .|++++|+ ..
T Consensus 19 ~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~ 73 (121)
T 1hxi_A 19 NPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAI-------IA 73 (121)
T ss_dssp CHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred hHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence 47899999999999 9999999999999999999999999999999 99999999 88
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
|+++++++|+++.+|+++|.+|...|++ ++|+..|+++++++|++..
T Consensus 74 ~~~al~l~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 74 LNHARMLDPKDIAVHAALAVSHTNEHNA----------NAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHC-------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999996 9999999999999998754
No 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.64 E-value=1.7e-15 Score=124.10 Aligned_cols=105 Identities=23% Similarity=0.220 Sum_probs=96.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|+++.+|+++|.
T Consensus 22 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--------------HEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456778889999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
++.. +|++++|+ .+|+++++++|++..+|++++......
T Consensus 88 ~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 88 ARFD----MADYKGAK-------EAYEKGIEAEGNGGSDAMKRGLETTKR 126 (164)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHH----ccCHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 9999 99999999 889999999999999888877765543
No 118
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=9.5e-16 Score=143.09 Aligned_cols=188 Identities=12% Similarity=0.070 Sum_probs=152.7
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------------hhhhhhhHHHHHHHHHHHHHhCCCC--
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------------GRSRQRILTFAAKRYANAIERNPED-- 157 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~A~~~~~~al~~~p~~-- 157 (365)
....+++.+|.++. ..|++++|+.++.+++.+.+. .+...|++++|+.+|++++++.+..
T Consensus 141 ~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 141 EKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 35688999999995 999999999999999987432 3556699999999999999986543
Q ss_pred ----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 158 ----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-----LC-PTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 158 ----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
..++.++|.++..+|+ +++|+.+|+++++ .+ |....+++++|.++.. +|+++
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 281 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQ--------------YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKID 281 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHH
T ss_pred hHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHH
Confidence 3589999999999999 9999999999999 46 7789999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+|+..+++|+....+. .+|.....+..+|.++...|+. ..+.+|+..+++. ...|....++..+|.++..
T Consensus 282 ~A~~~~~~al~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-------~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 282 KAHEYHSKGMAYSQKA--GDVIYLSEFEFLKSLYLSGPDE-------EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHTSSCCH-------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 9997766666554432 1344445577899999999882 2248888888887 3445556789999999999
Q ss_pred hhhhhh
Q 017806 308 LAEDTL 313 (365)
Q Consensus 308 ~g~~~~ 313 (365)
.|+..+
T Consensus 352 ~g~~~~ 357 (383)
T 3ulq_A 352 RKNFQK 357 (383)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 997653
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.64 E-value=1.3e-15 Score=121.75 Aligned_cols=107 Identities=16% Similarity=-0.013 Sum_probs=96.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+..|++++..+|.++.+|+.+|.++..+|+ +++|+.+|++++.++|+++.+++++|.
T Consensus 29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--------------YEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 456778999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
++.. .|++++|+ .+|+++++++|+++..+..+..+...++.
T Consensus 95 ~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 95 CHLQ----LGDLDGAE-------SGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999 99999999 77999999999888776666665555444
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.63 E-value=4.9e-14 Score=128.59 Aligned_cols=196 Identities=10% Similarity=0.018 Sum_probs=163.5
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CccccCCCCchhhhHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~a~~~~~~~~~~~~~ 190 (365)
-..+|..+..+++..+.... ..++|+..+.++|.++|++..+|+.++.++..++ . +++
T Consensus 49 y~~~y~~~~~~~r~~~~~~e-------~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~--------------l~e 107 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEE-------KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS--------------LED 107 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-------CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--------------HHH
T ss_pred eCHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhh--------------HHH
Confidence 45667777777776655432 2467999999999999999999999999999998 6 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-G-RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-g-~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
++.++++++.++|++..+|+.++.++.. . + ++++++ ..+.++++.+|++..+|+.++.++..++.++
T Consensus 108 EL~~~~~~L~~nPKny~aW~hR~wlL~~----l~~~~~~~EL-------~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 108 ELRLMNEFAVQNLKSYQVWHHRLLLLDR----ISPQDPVSEI-------EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHH----HCCSCCHHHH-------HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCCChHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999998 7 7 888777 7899999999999999999999999999861
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHH
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 348 (365)
.+ ....+.++++++.++++.+|.|..+|++++.++..+++.. .....+.....++.++..++|.+.
T Consensus 177 ~~--~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~------------~~~~~~~eELe~~~~aI~~~P~n~ 242 (349)
T 3q7a_A 177 RI--SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE------------TSSRSLQDELIYILKSIHLIPHNV 242 (349)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC------------CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cc--chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc------------cchHHHHHHHHHHHHHHHhCCCCH
Confidence 00 0111239999999999999999999999999999887421 123457788888899999999887
Q ss_pred HHHHH
Q 017806 349 VYSSA 353 (365)
Q Consensus 349 ~~~~a 353 (365)
....-
T Consensus 243 SaW~Y 247 (349)
T 3q7a_A 243 SAWNY 247 (349)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=2.2e-14 Score=116.62 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
+..++.+|.++...|+ +++|+..|++++.++|.+..+++++|.++.. .|++++|+
T Consensus 13 ~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~------- 67 (166)
T 1a17_A 13 AEELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL------- 67 (166)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred HHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH-------
Confidence 5678999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhhhhhhhh
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV--LYGLAEDTLRT 315 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~a~ 315 (365)
..|++++..+|+++.+|+++|.++..+|++ ++|+.+|++++.++|++..++..++.+ +...|+..++.
T Consensus 68 ~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 68 GDATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999999999996 999999999999999999998666665 66666554433
No 122
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=1.2e-14 Score=141.63 Aligned_cols=184 Identities=9% Similarity=-0.022 Sum_probs=153.9
Q ss_pred hccCCCchHHHHhcCCChhHh-------hhcHH-------HHHHHHHHhhc-cChh----------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQL-------AEQNN-------AAMELINSVTG-VDEE----------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~-------~g~~~-------~A~~~~~~al~-~~~~----------~~~~~~~~~~A~~~ 146 (365)
+...|.++.+|+.+|..+ .. .|+++ +|+..|++++. ..|. .....|++++|+..
T Consensus 265 l~~~p~~~~~w~~~~~~~-~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYL-EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHH-HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 566899999999999988 35 68876 89999999997 6665 12345899999999
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHhcC
Q 017806 147 YANAIERNPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA-ISDRAKMRG 224 (365)
Q Consensus 147 ~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~g 224 (365)
|+++++++|.++ .+|..+|.++...|+ +++|+..|+++++..|.+...+...+.+ +.. .|
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~----~~ 405 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEG--------------IKSGRMIFKKAREDARTRHHVYVTAALMEYYC----SK 405 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----TC
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhccCCchHHHHHHHHHHHHH----cC
Confidence 999999999885 689999999999888 9999999999999988887777776665 345 89
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH----HHHH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR----AIYN 300 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~ 300 (365)
++++|. ..|+++++.+|+++.+|..++.++...|+. ++|..+|++++...|.++. +|..
T Consensus 406 ~~~~A~-------~~~e~al~~~p~~~~~~~~~~~~~~~~g~~----------~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 406 DKSVAF-------KIFELGLKKYGDIPEYVLAYIDYLSHLNED----------NNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp CHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTTTCH----------HHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred ChhHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHhCCCH----------hhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 999999 778888888999999999999999999996 9999999999998766544 7777
Q ss_pred HHHHHHHhhhh
Q 017806 301 LGTVLYGLAED 311 (365)
Q Consensus 301 lg~~~~~~g~~ 311 (365)
........|+.
T Consensus 469 ~~~~e~~~G~~ 479 (530)
T 2ooe_A 469 FLAFESNIGDL 479 (530)
T ss_dssp HHHHHHHSSCH
T ss_pred HHHHHHHcCCH
Confidence 77777766754
No 123
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=1.8e-14 Score=109.76 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
.+..++.+|.++...|+ +++|+.+|++++..+|.++.+++.+|.++.. .|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~------ 58 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN--------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAY------ 58 (118)
T ss_dssp HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH------
T ss_pred hHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHH------
Confidence 35789999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
..++++++.+|+++.+++++|.++...|++ ++|+..|+++++.+|+++.++..++.+.
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 59 -EDGCKTVDLKPDWGKGYSRKAAALEFLNRF----------EEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 779999999999999999999999999996 9999999999999999999999998875
No 124
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.62 E-value=4.3e-14 Score=109.99 Aligned_cols=119 Identities=30% Similarity=0.402 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.+++.+|.++...|+ +++|+..|+++++.+|.+..+++.+|.++.. .|++++|+ .
T Consensus 2 ~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~ 56 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAI-------E 56 (136)
T ss_dssp HHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------H
T ss_pred cHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHH-------H
Confidence 578999999999999 9999999999999999999999999999999 99999999 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
.|++++..+|++..+++.+|.++...|++ ++|+..|++++...|.+..++..+|.++...|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 120 (136)
T 2fo7_A 57 YYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120 (136)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHH
Confidence 78888899999999999999999999996 99999999999999999999999999999988654
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.62 E-value=5.2e-15 Score=134.98 Aligned_cols=179 Identities=11% Similarity=0.027 Sum_probs=146.4
Q ss_pred hhhcHHHHHHHHHHhhccChhh----------hhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-CccccC
Q 017806 112 LAEQNNAAMELINSVTGVDEEG----------RSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQES-A-DNVSLD 178 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~----------~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~-~~~~a~ 178 (365)
..+..++|+..+.+++.++|.. ....+ .+++++.++.++|..+|.+..+|+.++.++..+ + +
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~----- 140 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD----- 140 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC-----
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC-----
Confidence 3444456666666666666651 12234 599999999999999999999999999999998 7 7
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE-AEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~-A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
+++++.++.++++++|.|..+|+.++.++.. .|+++. ....+..++..+.++++.+|.+..+|+++
T Consensus 141 ---------~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R 207 (349)
T 3q7a_A 141 ---------PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR 207 (349)
T ss_dssp ---------CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8999999999999999999999999999998 777761 11223344488999999999999999999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+.++..+++.. .....++++++++++++.++|+|..+|+.+..++...|..
T Consensus 208 ~~lL~~l~~~~---~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 208 WYLRVSRPGAE---TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHTTSTTCC---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhccccc---cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999988620 0123369999999999999999999999999999988765
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=2.6e-14 Score=116.22 Aligned_cols=121 Identities=20% Similarity=0.164 Sum_probs=110.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|++++..+|.+..+++++|.++...|+ +++|+.+|++++.++|.++.+++++|.
T Consensus 24 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 556889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA--LQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
++.. .|++++|+ .+|+++++++|++..++..++.+ +...|+ +++|+..+.++..+
T Consensus 90 ~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVKQKA----------FERAIAGDEHKRSV 146 (166)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHH----hccHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHcccchHHH
Confidence 9999 99999999 78999999999999998666655 666676 49999999987654
No 127
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=1.7e-14 Score=139.29 Aligned_cols=181 Identities=15% Similarity=0.107 Sum_probs=106.5
Q ss_pred CchHHHHhcCCChhHh----hhcHHHHHHHHHHhhccChh--------hhhh----hhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 97 SVTDASFSQGNTPHQL----AEQNNAAMELINSVTGVDEE--------GRSR----QRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~----~g~~~~A~~~~~~al~~~~~--------~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+++.+++.+|.++. . .+++++|+.+|++++..... .+.. .+++++|+.+|+++++. +++.+
T Consensus 181 ~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 257 (490)
T 2xm6_A 181 GNVWSCNQLGYMYS-RGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIA 257 (490)
T ss_dssp TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CCHHHHHHHHHHHh-cCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 45556666666652 4 55666666666666554322 1111 35666666666666554 45666
Q ss_pred HHHHHHHHHH----hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc-----CCHHHHHH
Q 017806 161 LYNWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-----GRTKEAEE 231 (365)
Q Consensus 161 ~~~lg~~~~~----~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-----g~~~~A~~ 231 (365)
++++|.++.. .++ +++|+.+|+++++. .++.++++||.++.. . +++++|+
T Consensus 258 ~~~lg~~y~~g~~~~~d--------------~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~----~~~g~~~~~~~A~- 316 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKE--------------PLKALEWYRKSAEQ--GNSDGQYYLAHLYDK----GAEGVAKNREQAI- 316 (490)
T ss_dssp HHHHHHHHHHTTTSSCC--------------HHHHHHHHHHHHTT--TCHHHHHHHHHHHHH----CBTTBCCCHHHHH-
T ss_pred HHHHHHHHHCCCCCCCC--------------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc----CCCCCcCCHHHHH-
Confidence 6667766666 555 78888888887654 567778888888777 6 7777777
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG---- 307 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 307 (365)
.+|+++++. +++.+++++|.+|...|.. .++++|+.+|+++++. .++.++++||.+|..
T Consensus 317 ------~~~~~a~~~--~~~~a~~~lg~~y~~~g~~-------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 317 ------SWYTKSAEQ--GDATAQANLGAIYFRLGSE-------EEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp ------HHHHHHHHT--TCHHHHHHHHHHHHHSCCH-------HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred ------HHHHHHHhc--CCHHHHHHHHHHHHhCCCc-------ccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Confidence 445555543 3455666666666554311 2245666666666554 445566666666655
Q ss_pred hhhhhhhhcCc
Q 017806 308 LAEDTLRTGGT 318 (365)
Q Consensus 308 ~g~~~~a~~~~ 318 (365)
.++..++...+
T Consensus 380 ~~~~~~A~~~~ 390 (490)
T 2xm6_A 380 KKDEQQAAIWM 390 (490)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44444444433
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=6.5e-15 Score=115.03 Aligned_cols=123 Identities=22% Similarity=0.243 Sum_probs=109.8
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
..|..+.+++.+|.++ ...|++++|+.+|+++++.+|.+..+++.+|.++...|+
T Consensus 11 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 65 (133)
T 2lni_A 11 MNPDLALMVKNKGNEC-------------------------FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65 (133)
T ss_dssp SSSCHHHHHHHHHHHH-------------------------HHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC
T ss_pred cCcccHHHHHHHHHHH-------------------------HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc
Confidence 3456677777777766 345667788888888888899999999999999999999
Q ss_pred ccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 174 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 174 ~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
+++|+.+|+++++++|++..+++++|.++.. .|++++|+ ..|+++++.+|++..+
T Consensus 66 --------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~ 120 (133)
T 2lni_A 66 --------------FQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTKAM-------DVYQKALDLDSSCKEA 120 (133)
T ss_dssp --------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCGGGTHH
T ss_pred --------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHHhCCCchHH
Confidence 9999999999999999999999999999999 99999999 7799999999999999
Q ss_pred HHHHHHHHHHhcC
Q 017806 254 LNNWGLALQELSA 266 (365)
Q Consensus 254 ~~~lg~~~~~~~~ 266 (365)
+..++.++..+|+
T Consensus 121 ~~~l~~~~~~~~~ 133 (133)
T 2lni_A 121 ADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998774
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.60 E-value=4.9e-14 Score=119.88 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
...++++|.++...|+ +++|+..|++++ +| ++.+++++|.++.. .|++++|+
T Consensus 6 ~~~~~~~g~~~~~~~~--------------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~----~g~~~~A~------- 57 (213)
T 1hh8_A 6 AISLWNEGVLAADKKD--------------WKGALDAFSAVQ--DP-HSRICFNIGCMYTI----LKNMTEAE------- 57 (213)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred HHHHHHHHHHHHHhCC--------------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHH----cCCHHHHH-------
Confidence 3457899999999999 999999999995 44 78999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH----------------HHHHHH
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH----------------RAIYNL 301 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l 301 (365)
..|++++.++|+++.+|+++|.++..+|++ ++|+..|++++++.|++. .+++++
T Consensus 58 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 58 KAFTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 779999999999999999999999999996 999999999999888776 999999
Q ss_pred HHHHHHhhhhhhhhcC
Q 017806 302 GTVLYGLAEDTLRTGG 317 (365)
Q Consensus 302 g~~~~~~g~~~~a~~~ 317 (365)
|.++..+|+...+...
T Consensus 128 ~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 128 AFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHccCHHHHHHH
Confidence 9999999977544443
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.60 E-value=2.4e-15 Score=127.17 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=100.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
++..|++++|+.+|.+++.+.|.++ .++.++|.++..+|+ +++|+.+|++
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~ 113 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------------YPKAIDHASK 113 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHH
Confidence 4556778888888888888877776 899999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 198 al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++.++|++..+++++|.++.. +|++++|+ ..|+++++++|++..++..++.++..+++.
T Consensus 114 al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 114 VLKIDKNNVKALYKLGVANMY----FGFLEEAK-------ENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999 889999999999999999999999999885
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=4.8e-14 Score=138.28 Aligned_cols=189 Identities=10% Similarity=-0.006 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
.++|+..+.+++.++|++..+|+.++.++..+++.. ........+++++.+++++++.+|++..+|+.++.++..
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~----~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~- 119 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR- 119 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccccc----chhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 468899999999999999999999999999987610 001112338999999999999999999999999999999
Q ss_pred HHhcC--CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 220 AKMRG--RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 220 ~~~~g--~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
.| ++++++ ..+.++++.+|++..+|+++|.++..+|.. ++++++++.++++.+|++..+
T Consensus 120 ---l~~~~~~~el-------~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~---------~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 120 ---LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVA---------PAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp ---CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTCCC---------HHHHHHHHHTTTTTTCCCHHH
T ss_pred ---cccccHHHHH-------HHHHHHHhhccccccHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHHCCCCccH
Confidence 99 668888 889999999999999999999999999933 599999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
|+++|.++..++....+... ..-....+..+..++.++..++|.+...+..++.+
T Consensus 181 W~~r~~ll~~l~~~~~~~~~-----~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQ-----GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSC-----CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccc-----ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99999999987643211000 01123568889999999999999987666555443
No 132
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-14 Score=113.97 Aligned_cols=119 Identities=18% Similarity=0.102 Sum_probs=112.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
.+|.+...++.+|.++...|+ +++|+.+|+++++++|++ ..+++++|.++.. .|++++|
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A 84 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGD--------------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKA 84 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHH
Confidence 467889999999999999999 999999999999999998 8999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+ ..|+++++.+|+++.+++++|.++..+|++ ++|+.+|++++.++|++..++..++.+..
T Consensus 85 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 85 E-------TEASKAIEKDGGDVKALYRRSQALEKLGRL----------DQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp H-------HHHHHHHHHTSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred H-------HHHHHHHhhCccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9 779999999999999999999999999996 99999999999999999999988887653
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=1.5e-14 Score=112.26 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=101.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+.+|++++.++|++..+++.+|.
T Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--------------YAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--------------hHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 455778888999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++.. .|++++|+ ..|+++++.+|++..++..+|.++..+|++
T Consensus 89 ~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSS----LNKHVEAV-------AYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHH----hCCHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999 99999999 779999999999999999999999999874
No 134
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.59 E-value=1.1e-13 Score=133.68 Aligned_cols=170 Identities=17% Similarity=0.124 Sum_probs=145.4
Q ss_pred cCCCchHHHHhcCCChhHh----hhcHHHHHHHHHHhhccChh--------hhhh----hhhHHHHHHHHHHHHHhCCCC
Q 017806 94 GEDSVTDASFSQGNTPHQL----AEQNNAAMELINSVTGVDEE--------GRSR----QRILTFAAKRYANAIERNPED 157 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~----~g~~~~A~~~~~~al~~~~~--------~~~~----~~~~~~A~~~~~~al~~~p~~ 157 (365)
.+..++.+++.+|.++. . .+++++|+.+|++++..... .+.. .+++++|+.+|+++++. ++
T Consensus 214 ~~~~~~~a~~~lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~ 290 (490)
T 2xm6_A 214 ATSGDELGQLHLADMYY-FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN 290 (490)
T ss_dssp HHTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC
T ss_pred HHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC
Confidence 34567889999999994 5 78999999999999987643 1222 58999999999999865 67
Q ss_pred HHHHHHHHHHHHHh-----cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC---CHHHH
Q 017806 158 YDALYNWALVLQES-----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG---RTKEA 229 (365)
Q Consensus 158 ~~~~~~lg~~~~~~-----~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g---~~~~A 229 (365)
+.+++.+|.++... ++ +++|+.+|+++++. .++.++++||.++.. .| ++++|
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~--------------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~----~g~~~~~~~A 350 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKN--------------REQAISWYTKSAEQ--GDATAQANLGAIYFR----LGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH----SCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCC--------------HHHHHHHHHHHHhc--CCHHHHHHHHHHHHh----CCCcccHHHH
Confidence 89999999999987 77 99999999999986 578899999999988 76 55555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
+ .+|+++++. +++.+++++|.+|.. .+++ ++|+.+|+++++. .++.++++||.+|
T Consensus 351 ~-------~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~----------~~A~~~~~~A~~~--~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 351 V-------EWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE----------QQAAIWMRKAAEQ--GLSAAQVQLGEIY 409 (490)
T ss_dssp H-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred H-------HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 5 888888876 689999999999999 7775 9999999999986 4699999999999
Q ss_pred HH
Q 017806 306 YG 307 (365)
Q Consensus 306 ~~ 307 (365)
..
T Consensus 410 ~~ 411 (490)
T 2xm6_A 410 YY 411 (490)
T ss_dssp HH
T ss_pred Hc
Confidence 87
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.59 E-value=1.2e-14 Score=131.85 Aligned_cols=179 Identities=12% Similarity=0.076 Sum_probs=140.1
Q ss_pred hhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCccccCCCCchhhh
Q 017806 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDA 186 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~ 186 (365)
.++++.|+.+|.++.. .+...|++++|+.+|.+++++.+.. ..++.++|.+|..+|+
T Consensus 29 ~~~~~~A~~~~~~a~~----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~------------- 91 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAV----AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR------------- 91 (307)
T ss_dssp SCCHHHHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred CCCHHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-------------
Confidence 5889999999998843 4556799999999999999986533 5688999999999999
Q ss_pred HHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 187 LLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
+++|+.+|++++++.+. ...++.++|.++ . .|++++|+..|++|+..+... ........++.++|.+
T Consensus 92 -~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~-~----~g~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg~~ 164 (307)
T 2ifu_A 92 -MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-E----PLDLSKAVHLYQQAAAVFENE-ERLRQAAELIGKASRL 164 (307)
T ss_dssp -GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-T----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-H----cCCHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 99999999999998543 246788999888 3 499999996666665555431 0000125789999999
Q ss_pred HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
|..+|++ ++|+.+|++++.+.|++ ..++.++|.++..+|+...+...+..++ ..|
T Consensus 165 ~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 165 LVRQQKF----------DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHcCCH----------HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 9999996 99999999999986544 3478889999999998887777665555 444
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=1.8e-14 Score=128.93 Aligned_cols=154 Identities=17% Similarity=0.015 Sum_probs=105.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|+++++.+|++..+++++|.++..+|+ +++|+..|+++++++|++..+++++|.
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------------PEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456778888888889999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. +|++++|+ ..|+++++++|++...+.......... .++..+........|.+
T Consensus 81 ~~~~----~g~~~~A~-------~~~~~al~l~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 136 (281)
T 2c2l_A 81 CQLE----MESYDEAI-------ANLQRAYSLAKEQRLNFGDDIPSALRI-------------AKKKRWNSIEERRIHQE 136 (281)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCCCSHHHHHHHH-------------HHHHHHHHHHHTCCCCC
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCccchhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhh
Confidence 9999 99999999 667777777775532222121211111 11222222223344555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE 328 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~ 328 (365)
..+...++.++ .|+...+...+..+....|.+
T Consensus 137 ~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 137 SELHSYLTRLI--AAERERELEECQRNHEGHEDD 168 (281)
T ss_dssp CHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhccccch
Confidence 55555555443 455555555555555555543
No 137
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.58 E-value=8.5e-15 Score=132.75 Aligned_cols=163 Identities=12% Similarity=-0.023 Sum_probs=130.2
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC------CH
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE------DY 158 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~------~~ 158 (365)
.+...|.++ ...|++++|+..|.+++.+.+. .+...|++++|+.+|++++++.+. ..
T Consensus 38 ~~~~a~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAF-KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345557778 4999999999999999988643 244558999999999999998543 25
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.++.++|.+|.. |+ +++|+.+|++++.+.|.. ..++.++|.++.. +|++++|+..
T Consensus 117 ~~~~~lg~~~~~-g~--------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~ 177 (307)
T 2ifu_A 117 MALDRAGKLMEP-LD--------------LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAAS 177 (307)
T ss_dssp HHHHHHHHHHTT-TC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHHc-CC--------------HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 688999999998 99 999999999999997653 6789999999999 9999999966
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
|++|+..+...- ..+....++.++|.++..+|++ ++|+.+|++++ ++|++.
T Consensus 178 ~~~al~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 178 LQKEKSMYKEME-NYPTCYKKCIAQVLVQLHRADY----------VAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHh-CCCCCC
Confidence 555554443210 0011245888999999999996 99999999999 999764
No 138
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.58 E-value=6.4e-15 Score=118.69 Aligned_cols=104 Identities=19% Similarity=0.136 Sum_probs=89.2
Q ss_pred hhhhhHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-
Q 017806 135 SRQRILTFAAKRYANAIERNPE-------DYD-----ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL- 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~- 201 (365)
+..|+|++|+.+|+++|+++|+ +.. +|.++|.++..+|+ |++|+.+|+++|++
T Consensus 22 ~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------------~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------------FDEALHSADKALHYF 87 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhh
Confidence 4456677777777777777777 433 99999999999999 99999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 202 ------CPTLHDAF----YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 202 ------~p~~~~~~----~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
+|++..+| +++|.++.. +|++++|+ .+|+++++++|++..++..+..+...
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl-------~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAM-------PEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999 999999999 99999999 88999999999887766665555444
No 139
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=2e-14 Score=140.07 Aligned_cols=172 Identities=12% Similarity=-0.010 Sum_probs=148.3
Q ss_pred HHHHHHHHHhhccChhh----------hhh-------hhhHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHh
Q 017806 117 NAAMELINSVTGVDEEG----------RSR-------QRILT-------FAAKRYANAIE-RNPEDYDALYNWALVLQES 171 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~----------~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~ 171 (365)
..++..|++++...|.. +.. .|+++ +|+..|+++++ .+|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 47888999999988761 111 47766 89999999998 8999999999999999999
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
|+ +++|+..|+++++++|.++ .+|.++|.++.. .|++++|+ ..|+++++..|..
T Consensus 335 g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~-------~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 335 MK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGR-------MIFKKAREDARTR 389 (530)
T ss_dssp TC--------------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHTCTTCC
T ss_pred CC--------------HHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhccCCc
Confidence 99 9999999999999999985 699999999998 99999988 7789999988888
Q ss_pred HHHHHHHHHH-HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 251 PQALNNWGLA-LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 251 ~~~~~~lg~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
...+...+.+ +...|+. ++|...|+++++..|+++.+|.+++.++...|+...+...+..++.
T Consensus 390 ~~~~~~~a~~~~~~~~~~----------~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp THHHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 8877776665 3457885 9999999999999999999999999999999988777666555544
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.58 E-value=7.3e-15 Score=129.97 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=152.2
Q ss_pred hccCCCchHHHHhc-------CCChhHhhhcHHHHHHHHHHhhccChh---------h----------------------
Q 017806 92 SEGEDSVTDASFSQ-------GNTPHQLAEQNNAAMELINSVTGVDEE---------G---------------------- 133 (365)
Q Consensus 92 ~~~~~~~~~a~~~~-------g~~~~~~~g~~~~A~~~~~~al~~~~~---------~---------------------- 133 (365)
...+|+.+++|.++ +.++ ...+++.+++..+++++.+.|. +
T Consensus 33 ~~~dP~~~Daw~g~~a~g~~~~~~L-~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 33 TNYDESACDAWIGRIRCGDTDRVTL-FRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC 111 (282)
T ss_dssp HHHCTTCHHHHHHHHHTTCCCHHHH-HHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred HHhChhhhHHHHhHHHccCCcHHHH-HHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence 57899999999999 8899 5999999999999999998765 2
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-C-HHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-L-HDAFYN 211 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~ 211 (365)
+...|+|++|.+.|..++..+|++. +++.+|.++...++ |++|+.+|++++...+. . ..++++
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r--------------~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER--------------WTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC--------------HHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC--------------HHHHHHHHHHhhccCCcccHHHHHHH
Confidence 2335999999999999999999988 99999999999999 99999999988775322 1 468999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
+|.++.. +|++++|+ .+|++++... |. .+++++++|.++.++|+. ++|...|++++
T Consensus 177 LG~al~~----LG~~~eAl-------~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~----------deA~~~l~~a~ 235 (282)
T 4f3v_A 177 HGVAAAN----LALFTEAE-------RRLTEANDSPAGEACARAIAWYLAMARRSQGNE----------SAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHH----TTCHHHHH-------HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHH
T ss_pred HHHHHHH----CCCHHHHH-------HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Confidence 9999999 99999999 7788887544 65 678999999999999997 99999999999
Q ss_pred HhCCCCHHHHHHHHH
Q 017806 289 QLQFDFHRAIYNLGT 303 (365)
Q Consensus 289 ~~~p~~~~~~~~lg~ 303 (365)
..+|+ ..++..|..
T Consensus 236 a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 236 TTHPE-PKVAAALKD 249 (282)
T ss_dssp HHSCC-HHHHHHHHC
T ss_pred hcCCc-HHHHHHHhC
Confidence 99999 877766643
No 141
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=7.3e-15 Score=136.91 Aligned_cols=160 Identities=13% Similarity=0.006 Sum_probs=133.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---
Q 017806 134 RSRQRILTFAAKRYANAIERNP------EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--- 204 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--- 204 (365)
+...|++++|+.+|++++++.+ ..+.+++++|.++..+|+ +++|+.++++++++.+.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~--------------~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ--------------THVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHHHHHhCCC
Confidence 4566999999999999998742 346789999999999999 99999999999998543
Q ss_pred ----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 205 ----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 205 ----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
...+++++|.++.. .|++++|+..|++|+..+++. ...+....+++++|.+|..+|++ ++|
T Consensus 177 ~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~----------~~A 241 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDD----FKHYDKALPHLEAALELAMDI-QNDRFIAISLLNIANSYDRSGDD----------QMA 241 (378)
T ss_dssp CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------HHH
T ss_pred chhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCCH----------HHH
Confidence 35689999999999 999999997777777665432 11122457899999999999996 999
Q ss_pred HHHHHHHHH-----hCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 281 ISKFRAAIQ-----LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 281 ~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
+.+|++++. .+|..+.++.++|.++..+|+..++...+..++
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999 788889999999999999999887766554433
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.57 E-value=3e-14 Score=117.92 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=109.9
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA- 260 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~- 260 (365)
....|++++|+..|++++..+|+++.+|+.+|.++.. .|++++|+ ..|+++++++|+++.++.++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~l 88 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSL-------LAYRQALQLRGENAELYAALATVL 88 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4456779999999999999999999999999999999 99999999 77999999999999999999999
Q ss_pred HHHhcCcchhHHhhhHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHH
Q 017806 261 LQELSAIVPAREKQTIV--RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA 338 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 338 (365)
+...|+ + ++|+.+|++++..+|++..+++++|.++...|+. ..+..+|.
T Consensus 89 ~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------------------~~A~~~~~ 139 (177)
T 2e2e_A 89 YYQASQ----------HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY-------------------AQAIELWQ 139 (177)
T ss_dssp HHHTTT----------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------------------HHHHHHHH
T ss_pred HHhcCC----------cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH-------------------HHHHHHHH
Confidence 778887 5 9999999999999999999999999999999966 45666667
Q ss_pred HHHhcCccH
Q 017806 339 AAHALKPSY 347 (365)
Q Consensus 339 ~a~~~~~~~ 347 (365)
++..+.|.+
T Consensus 140 ~al~~~p~~ 148 (177)
T 2e2e_A 140 KVMDLNSPR 148 (177)
T ss_dssp HHHHTCCTT
T ss_pred HHHhhCCCC
Confidence 777777765
No 143
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=3.4e-14 Score=121.66 Aligned_cols=177 Identities=14% Similarity=0.065 Sum_probs=141.9
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------hhhhhh----hHHHHHHHHHHHHHhCCCCHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------GRSRQR----ILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~----~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
.+..++.+++.+|.++. ..+++++|+.+|++++..... .+.. + ++++|+.+|+++++ ++++.++
T Consensus 13 a~~g~~~a~~~lg~~~~-~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~ 88 (212)
T 3rjv_A 13 AEAGDRRAQYYLADTWV-SSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGE 88 (212)
T ss_dssp HHTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHH
T ss_pred HHCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHH
Confidence 34578999999999994 999999999999999987532 1222 5 89999999999965 6799999
Q ss_pred HHHHHHHHH----hcCccccCCCCchhhhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 162 YNWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 162 ~~lg~~~~~----~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
++||.+|.. .++ +++|+.+|+++++..+ .++.++++||.+|..-.-..+++++|+
T Consensus 89 ~~Lg~~y~~g~g~~~d--------------~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~----- 149 (212)
T 3rjv_A 89 IVLARVLVNRQAGATD--------------VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS----- 149 (212)
T ss_dssp HHHHHHHTCGGGSSCC--------------HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH-----
T ss_pred HHHHHHHHcCCCCccC--------------HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH-----
Confidence 999999987 677 9999999999999988 459999999999976100124677777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSA--IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
.+|+++++. +.++.+++++|.+|..... . ..++++|+.+|+++++.. +..+...|+.+
T Consensus 150 --~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~------~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 150 --EYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFI------EPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp --HHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTB------CCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred --HHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCC------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 889999988 7788899999999987531 0 012599999999999884 56666666543
No 144
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.57 E-value=3.8e-15 Score=143.39 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=111.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|+++.+++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456778899999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhcCcchhHHhhhHHHHHHHHHH-------
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA--LQELSAIVPAREKQTIVRTAISKFR------- 285 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~~~~~~~~~~~A~~~~~------- 285 (365)
++.. +|++++|+ ..|+++++++|++..++.+++.+ +...|++ ++|++.++
T Consensus 83 ~~~~----~g~~~eA~-------~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~----------~~A~~~~~~~~~~~~ 141 (477)
T 1wao_1 83 SNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVKQKAF----------ERAIAGDEHKRSVVD 141 (477)
T ss_dssp HHHH----HTCHHHHH-------HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH----------CCC------CCSTTT
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----------HHHhccccccchhHh
Confidence 9999 99999999 77999999999999999999999 7777775 99999999
Q ss_pred ----HHHHhCCCCH
Q 017806 286 ----AAIQLQFDFH 295 (365)
Q Consensus 286 ----~al~~~p~~~ 295 (365)
+++.++|++.
T Consensus 142 ~~~~~al~~~~~~~ 155 (477)
T 1wao_1 142 SLDIESMTIEDEYS 155 (477)
T ss_dssp CCTTSSCCCCTTCC
T ss_pred hhhhhhcccccccc
Confidence 8888877653
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.57 E-value=2.6e-14 Score=128.54 Aligned_cols=150 Identities=16% Similarity=0.068 Sum_probs=122.8
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYD------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-- 205 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 205 (365)
+...|++++|+..|++++...+..+. .+..+|.++...++ +++|+.+|++++.+.+..
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------YEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC--------------HHHHHHHHHHHHHTCCCCSC
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC--------------HHHHHHHHHHHHHHhccccc
Confidence 35568899999999999998777655 23358888888888 999999999999975442
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 206 ----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
..+++++|.+|.. .|++++|+.+|++|++.++..-...+....+++++|.+|..+|++ ++|+
T Consensus 151 ~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y----------~~A~ 216 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY----------EESL 216 (293)
T ss_dssp TTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH----------HHHH
Confidence 4479999999999 999999998888887766543122334567999999999999996 9999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhhhh
Q 017806 282 SKFRAAIQLQFDF------HRAIYNLGTVLYGLAED 311 (365)
Q Consensus 282 ~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~ 311 (365)
.+|++++++.+.. +.+++++|.++..+|+.
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 252 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999986443 78999999999999954
No 146
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=7.6e-14 Score=119.50 Aligned_cols=177 Identities=13% Similarity=-0.021 Sum_probs=139.4
Q ss_pred HHHHHHHHhhccCh-h-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CccccCCCCchhh
Q 017806 118 AAMELINSVTGVDE-E-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA----DNVSLDSTSPSKD 185 (365)
Q Consensus 118 ~A~~~~~~al~~~~-~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~----~~~~a~~~~~~~~ 185 (365)
+|+.+|+++..... . .+...+++++|+.+|+++++. +++.++++||.+|.. + +
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~------------ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD------------ 68 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC------------
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC------------
Confidence 46677777776642 2 344569999999999999875 689999999999998 6 6
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW--NSPQALNNWGLALQE 263 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~ 263 (365)
+++|+.+|+++++ +.++.++++||.+|..-.-..+++++|+ .+|+++++..+ +++.++++||.+|..
T Consensus 69 --~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~-------~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 69 --YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAI-------TLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp --HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHH-------HHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHH-------HHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 9999999999965 6799999999999953100145778888 88999999887 459999999999999
Q ss_pred ----hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHH
Q 017806 264 ----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA 339 (365)
Q Consensus 264 ----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 339 (365)
.+++ ++|+.+|+++++. +.++.++++||.+|.....-. . ...+..+..+|.+
T Consensus 138 g~g~~~d~----------~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~---------~----~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 138 GVHGPEDD----------VKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGF---------I----EPNKQKALHWLNV 193 (212)
T ss_dssp TSSSSCCH----------HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTT---------B----CCCHHHHHHHHHH
T ss_pred CCCCCCCH----------HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCC---------C----CCCHHHHHHHHHH
Confidence 6675 9999999999998 777889999999987642100 0 0124668888888
Q ss_pred HHhcC
Q 017806 340 AHALK 344 (365)
Q Consensus 340 a~~~~ 344 (365)
+.+..
T Consensus 194 A~~~g 198 (212)
T 3rjv_A 194 SCLEG 198 (212)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 88774
No 147
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.57 E-value=5.8e-14 Score=109.01 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
..+.+++.+|.++...|+ +++|+.+|++++.++|.++.+++++|.++.. .|++++|+
T Consensus 2 ~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~----- 58 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKD--------------FDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCR----- 58 (131)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-----
T ss_pred hHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHH-----
Confidence 346789999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 236 ATKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 236 A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
..|++++..+|++ ..+++++|.++...|++ ++|+.+|++++.+.| +...+..++.+...+
T Consensus 59 --~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 59 --ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY----------KDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp --HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 6677777777666 89999999999999996 999999999999999 689999999988877
Q ss_pred hhh
Q 017806 309 AED 311 (365)
Q Consensus 309 g~~ 311 (365)
++.
T Consensus 126 ~~~ 128 (131)
T 1elr_A 126 KEQ 128 (131)
T ss_dssp HHC
T ss_pred HHh
Confidence 653
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.56 E-value=1.4e-14 Score=129.76 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
|.++.+++.+|.++...|+ +++|+..|++++.++|+++.+++++|.++.. .|++++|+
T Consensus 1 p~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~---- 58 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL---- 58 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred ChhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHH----
Confidence 5678899999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
..|+++++++|+++.+++++|.+|..+|++ ++|+..|++++.++|++.
T Consensus 59 ---~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 59 ---ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ---HHHHHHTTSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCccch
Confidence 789999999999999999999999999996 999999999999998763
No 149
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.56 E-value=2.6e-14 Score=107.88 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=102.5
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
++|++..+++.+|.++...|+ +++|+.+|+++++++|.+..+++++|.++.. .|++++|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-- 60 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGN--------------YTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAV-- 60 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred CCCCcHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHH--
Confidence 468899999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHh-cCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 233 WKQATKNYEKAVQLNWN--SPQALNNWGLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
..|+++++.+|+ +..+++++|.++..+ |++ ++|+++|++++...|.+
T Consensus 61 -----~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 61 -----DCYNYVINVIEDEYNKDVWAAKADALRYIEGKE----------VEAEIAEARAKLEHHHH 110 (112)
T ss_dssp -----HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCS----------HHHHHHHHHHGGGCCCC
T ss_pred -----HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHhhcccCC
Confidence 789999999999 999999999999999 997 99999999999999875
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.55 E-value=1.4e-13 Score=123.76 Aligned_cols=165 Identities=10% Similarity=-0.027 Sum_probs=132.7
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCCC--
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPED-- 157 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~~-- 157 (365)
|.....+...+..+. ..|++++|+..+.+++...+. .+...|++++|+.+|+++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~-~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 72 IERKKQFKDQVIMLC-KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred hhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556667777784 999999999999999876542 1233479999999999999876543
Q ss_pred ----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHHHhcCCH
Q 017806 158 ----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT---RLCPTLH----DAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 158 ----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~lg~~~~~~~~~~g~~ 226 (365)
..+++++|.+|...|+ +++|+.+|++++ +..|++. .+++++|.++.. +|++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~--------------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y 212 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGY--------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRY 212 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCH
T ss_pred hHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhH
Confidence 6689999999999999 999999999999 4456543 689999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH-HHHHHHHHHh
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA-ISKFRAAIQL 290 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 290 (365)
++|+.++++|+..... .........+++++|.+|..+|++ ++| ..+|++|+.+
T Consensus 213 ~~Al~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~----------~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 213 EESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYE----------EAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHH
Confidence 9999777777665532 122222378999999999999997 999 7889999876
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.55 E-value=1.7e-13 Score=105.27 Aligned_cols=106 Identities=31% Similarity=0.400 Sum_probs=98.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|++++..+|.+..+++.+|.++...|+ +++|+.+|++++.++|.+..+++.+|.
T Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 445778888888899999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
++.. .|++++|+ ..|+++++.+|++..++.++|.++...|
T Consensus 86 ~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYK----QGDYDEAI-------EYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHH----hcCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999 99999999 7799999999999999999999998765
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=3.6e-14 Score=110.31 Aligned_cols=93 Identities=16% Similarity=0.072 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|+++++.+|+++.+|+.+|.++...|+ +++|+.+|+++++++|+++.+++++|.
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLDPKDIAVHAALAV 93 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
++.. .|++++|+ ..|+++++++|++..
T Consensus 94 ~~~~----~g~~~~A~-------~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 94 SHTN----EHNANAAL-------ASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHH----HHHHHHHH-------HHHHHHHC-------
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCcCCCC
Confidence 9999 99999999 789999999998654
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.54 E-value=1.7e-13 Score=106.75 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+++.+|.++...|+ +++|+..|++++..+|++. .+++.+|.++.. .|++++|+
T Consensus 3 ~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~----- 59 (129)
T 2xev_A 3 RTAYNVAFDALKNGK--------------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAE----- 59 (129)
T ss_dssp CCHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred HHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHH-----
Confidence 357899999999999 9999999999999999988 899999999999 99999999
Q ss_pred HHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 236 ATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 236 A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
..|++++..+|++ +.+++++|.++..+|++ ++|+..|++++...|++..+...+..+...
T Consensus 60 --~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 60 --AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN----------TEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp --HHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 7799999999999 89999999999999996 999999999999999998877666555443
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=7.3e-15 Score=140.76 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=112.7
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPED---------------YDALYNWAL 166 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 166 (365)
.++++++|+..|..++...+. .++..|+|++|+.+|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555554433 4566799999999999999999998 699999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++..+|+ |++|+.+|+++++++|+++.+|+++|.++.. +|++++|+ .+|++++++
T Consensus 326 ~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~-------~~~~~al~l 380 (457)
T 1kt0_A 326 CYLKLRE--------------YTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAK-------GDFEKVLEV 380 (457)
T ss_dssp HHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHTT
T ss_pred HHHHhcC--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHh
Confidence 9999999 9999999999999999999999999999999 99999999 889999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCc
Q 017806 247 NWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+|++..++.+++.++..++++
T Consensus 381 ~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 381 NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp C----CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.54 E-value=5e-14 Score=114.95 Aligned_cols=137 Identities=14% Similarity=0.074 Sum_probs=102.3
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccC
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
+..+..+|..++ ..|++++|+..|.+++.+.+....... .... .....+|.+..+|.++|.++..+|+
T Consensus 11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~nla~~~~~~~~----- 78 (162)
T 3rkv_A 11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREK-PGEP-----EWVELDRKNIPLYANMSQCYLNIGD----- 78 (162)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSC-TTSH-----HHHHHHHTHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCC-CCHH-----HHHHHHHHHHHHHHHHHHHHHhcCc-----
Confidence 455666666663 566666666555555554221100000 0000 0012267788999999999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNW 257 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~-~~~~~l 257 (365)
|++|+.+|+++++++|+++.+|+.+|.++.. +|++++|+ ..|+++++++|++. .+...+
T Consensus 79 ---------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~-------~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 79 ---------LHEAEETSSEVLKREETNEKALFRRAKARIA----AWKLDEAE-------EDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp ---------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCGGGHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHH-------HHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 88999999999998 778888
Q ss_pred HHHHHHhcCc
Q 017806 258 GLALQELSAI 267 (365)
Q Consensus 258 g~~~~~~~~~ 267 (365)
+.+...+++.
T Consensus 139 ~~~~~~~~~~ 148 (162)
T 3rkv_A 139 KIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776653
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=7.1e-14 Score=110.17 Aligned_cols=122 Identities=21% Similarity=0.098 Sum_probs=104.6
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN 174 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 174 (365)
++.++..++.+|.++ +..|++++|+.+|.+++..+|.++.+++++|.++..+|+
T Consensus 5 ~~~~~~~~~~~g~~~-------------------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~- 58 (137)
T 3q49_B 5 KSPSAQELKEQGNRL-------------------------FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ- 58 (137)
T ss_dssp -CCCHHHHHHHHHHH-------------------------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred ccccHHHHHHHHHHH-------------------------HHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-
Confidence 455666777777666 456778889999999999999999999999999999999
Q ss_pred cccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC-----
Q 017806 175 VSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN----- 249 (365)
Q Consensus 175 ~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~----- 249 (365)
+++|+.+|+++++++|+++.+++++|.++.. .|++++|+ ..|+++++++|+
T Consensus 59 -------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~ 114 (137)
T 3q49_B 59 -------------PEQALADCRRALELDGQSVKAHFFLGQCQLE----MESYDEAI-------ANLQRAYSLAKEQRLNF 114 (137)
T ss_dssp -------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCC
T ss_pred -------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHHHChhHHHHH
Confidence 9999999999999999999999999999999 99999999 668888877777
Q ss_pred CHHHHHHHHHHHHHhcC
Q 017806 250 SPQALNNWGLALQELSA 266 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~ 266 (365)
+..++..+..+......
T Consensus 115 ~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 115 GDDIPSALRIAKKKRWN 131 (137)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777777665543
No 157
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1.9e-13 Score=130.66 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=126.4
Q ss_pred cCCCchHHHHhcCCChhHhhhcH---HHHHHHHHHhhccChhhh-------hhh-----hhHHHHHHHHHHHHHhCCCCH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQN---NAAMELINSVTGVDEEGR-------SRQ-----RILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~---~~A~~~~~~al~~~~~~~-------~~~-----~~~~~A~~~~~~al~~~p~~~ 158 (365)
.+++++.+++.+|.++. ..|+. ++|+.+|++++..++.++ ... +++++|+.+|+++++.+ ++
T Consensus 30 a~~g~~~A~~~Lg~~y~-~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~ 106 (452)
T 3e4b_A 30 AELGYSEAQVGLADIQV-GTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EG 106 (452)
T ss_dssp HHHTCCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CS
T ss_pred HHCCCHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CH
Confidence 34567899999999995 88888 999999999998865521 111 48899999999998853 34
Q ss_pred HHHHHHHHHHHHhcCcccc--------------------------------------------------------CCCCc
Q 017806 159 DALYNWALVLQESADNVSL--------------------------------------------------------DSTSP 182 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a--------------------------------------------------------~~~~~ 182 (365)
.++++||.+|...+....+ .+..+
T Consensus 107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~ 186 (452)
T 3e4b_A 107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVY 186 (452)
T ss_dssp SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677777777665442222 00011
Q ss_pred hhhh---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 183 SKDA---LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR----GRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 183 ~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~----g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
...| ++++|+.+|+++.+..|..+..+++||.+|.. . +++++|+ .+|+++. |+++.+++
T Consensus 187 ~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~----g~~~~~d~~~A~-------~~~~~aa---~g~~~a~~ 252 (452)
T 3e4b_A 187 QKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGD----ATLGTPDEKTAQ-------ALLEKIA---PGYPASWV 252 (452)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC----GGGSSCCHHHHH-------HHHHHHG---GGSTHHHH
T ss_pred HHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCCCCCHHHHH-------HHHHHHc---CCCHHHHH
Confidence 1124 89999999999999999999999999999966 4 6888888 7788876 88899999
Q ss_pred HHHHHHH---HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----hhhhhhcCcCCCC
Q 017806 256 NWGLALQ---ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA-----EDTLRTGGTVNPR 322 (365)
Q Consensus 256 ~lg~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~a~~~~~~~~ 322 (365)
++|.+|. ..++ +++|+.+|+++++. +++.++++||.+|. .| +..++...+..+.
T Consensus 253 ~Lg~~~~~~~~~~d----------~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 253 SLAQLLYDFPELGD----------VEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHSGGGCC----------HHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCC----------HHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9999844 3444 58888888888754 47888888888887 55 6666666555555
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=1.8e-13 Score=104.15 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=97.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+.+|++++..+|.+..++..+|.++...|+ +++|+..|++++.++|++..+++++|.
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------------YQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456789999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
++.. .|++++|+ ..|+++++.+|++..++..++.+..
T Consensus 81 ~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 81 ALEF----LNRFEEAK-------RTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHH----HhhHHHHH-------HHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999 99999999 7899999999999999999988753
No 159
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1.5e-13 Score=131.43 Aligned_cols=172 Identities=14% Similarity=0.089 Sum_probs=85.6
Q ss_pred hHHHHhcCCChhHhhh----cHHHHHHHHHHhhccChhhhhh-------hh---hHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAE----QNNAAMELINSVTGVDEEGRSR-------QR---ILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~-------~~---~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
+.+++.+|.++. ..+ ..+.+..+++.+...++.+++. .| ++++|+.+|+++++.+|.....++++
T Consensus 141 ~~a~~~Lg~~y~-~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYR-TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHH-HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444444442 333 3344444455555544443221 23 56666666666666666655555666
Q ss_pred HHHHHHh----cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 165 ALVLQES----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 165 g~~~~~~----~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|.+|... ++ +++|+.+|+++. |.++.++++||.+|.. ....+++++|+ .+|
T Consensus 220 g~~y~~g~~~~~d--------------~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~-~~~~~d~~~A~-------~~~ 274 (452)
T 3e4b_A 220 ARVLGDATLGTPD--------------EKTAQALLEKIA---PGYPASWVSLAQLLYD-FPELGDVEQMM-------KYL 274 (452)
T ss_dssp HHHHTCGGGSSCC--------------HHHHHHHHHHHG---GGSTHHHHHHHHHHHH-SGGGCCHHHHH-------HHH
T ss_pred HHHHhCCCCCCCC--------------HHHHHHHHHHHc---CCCHHHHHHHHHHHHh-CCCCCCHHHHH-------HHH
Confidence 6665433 23 566666666655 5556666666665321 00045555555 445
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+++++. +++.+++++|.+|. .|.- -..++++|+.+|++++ +.++.++++||.+|..
T Consensus 275 ~~Aa~~--g~~~A~~~Lg~~y~-~G~g-----~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 275 DNGRAA--DQPRAELLLGKLYY-EGKW-----VPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHHT--TCHHHHHHHHHHHH-HCSS-----SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHHHHC--CCHHHHHHHHHHHH-cCCC-----CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 554432 35555566665555 3300 0001355555555555 5555555555555544
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.53 E-value=5.3e-13 Score=119.86 Aligned_cols=149 Identities=16% Similarity=0.086 Sum_probs=124.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-- 205 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 205 (365)
+...|++++|+..+.++++..+... ..++.+|.++...|+ +++|+.+|++++.+.+..
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------YEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--------------HHHHHHHHHHHHTTCCCSSC
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHHhcCCc
Confidence 4567899999999999999988754 346678888888889 999999999999876543
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 206 ----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
..+++++|.+|.. .|++++|+.+|++|++.++. .|++ ..+++++|.+|..+|++
T Consensus 151 ~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~----~~~~~~~~~~~~~nlg~~y~~~~~y---------- 212 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEA----LHDNEEFDVKVRYNHAKALYLDSRY---------- 212 (293)
T ss_dssp TTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHTTCH----------
T ss_pred hHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHh----cCccccchHHHHHhHHHHHHHHhhH----------
Confidence 6789999999999 99999999776666655443 4443 26999999999999996
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhhhhhh
Q 017806 278 RTAISKFRAAIQLQFD------FHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 278 ~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~a 314 (365)
++|+.+|++++.+.++ .+.+++++|.++..+|+..++
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999988543 278999999999999987654
No 161
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.53 E-value=6.1e-15 Score=130.48 Aligned_cols=177 Identities=11% Similarity=0.014 Sum_probs=137.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhcCccccC--------------------CCC--------
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNW-------ALVLQESADNVSLD--------------------STS-------- 181 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~~~~~~a~--------------------~~~-------- 181 (365)
.+++..|.++|.++++++|+..++|..+ +.++..+++...+. ...
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 3566777777777777777777777777 56666655544330 010
Q ss_pred -------------chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 182 -------------PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 182 -------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
....|+|++|.+.|+.++...|++. .++.+|.++.. .++|++|+ ..|+.++...+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~-------~~l~~a~~~~d 166 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVI-------DQVKSAGKWPD 166 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHH-------HHHTTGGGCSC
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHH-------HHHHHhhccCC
Confidence 1234669999999999999999988 99999999999 99999999 66777766432
Q ss_pred C-C-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 249 N-S-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--FD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 249 ~-~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
. . ..+++++|.++..+|++ ++|+.+|++++... |. ...+++++|.++..+|+.
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~----------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~------------ 224 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALF----------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE------------ 224 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH------------
T ss_pred cccHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH------------
Confidence 2 1 45899999999999996 99999999999654 65 567999999999999976
Q ss_pred CCcchHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 324 VSPNELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 324 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
.++...|.++...+|. ..+..+|.
T Consensus 225 -------deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 225 -------SAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp -------HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred -------HHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 4566777999999999 87777774
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=1.2e-14 Score=139.82 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
+++.+|.++...|+ +++|+..|+++++++|++..+|+++|.++.. +|++++|+ ..
T Consensus 8 ~~~~lg~~~~~~g~--------------~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~ 62 (477)
T 1wao_1 8 ELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------GD 62 (477)
T ss_dssp TSSSSSSSTTTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHH-------HH
Confidence 44555666666666 9999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhhhhhhhhcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV--LYGLAEDTLRTGG 317 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~a~~~ 317 (365)
|+++++++|+++.+|+++|.+|..+|++ ++|+..|+++++++|++..++.+++.+ +...|+..++...
T Consensus 63 ~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~ 132 (477)
T 1wao_1 63 ATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 132 (477)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999996 999999999999999999999999999 8888988888776
Q ss_pred cC
Q 017806 318 TV 319 (365)
Q Consensus 318 ~~ 319 (365)
+.
T Consensus 133 ~~ 134 (477)
T 1wao_1 133 DE 134 (477)
T ss_dssp --
T ss_pred cc
Confidence 65
No 163
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=1.7e-13 Score=127.53 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----------------LCPTLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~~~ 221 (365)
...+..+|.++...|+ |++|+.+|+++++ ++|.+..+|+++|.++..
T Consensus 223 a~~~~~~g~~~~~~g~--------------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--- 285 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQN--------------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK--- 285 (370)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 4568999999999999 9999999999999 788889999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (365)
Q Consensus 222 ~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (365)
+|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+..|+++++++|++..++..+
T Consensus 286 -~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 286 -MSDWQGAV-------DSCLEALEIDPSNTKALYRRAQGWQGLKEY----------DQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp -TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -ccCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999 889999999999999999999999999996 999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhc
Q 017806 302 GTVLYGLAEDTLRTG 316 (365)
Q Consensus 302 g~~~~~~g~~~~a~~ 316 (365)
+.++..+++..++..
T Consensus 348 ~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999997765543
No 164
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=3.7e-13 Score=124.72 Aligned_cols=189 Identities=12% Similarity=-0.034 Sum_probs=146.9
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------hhhhhhhHHHHHHHHHHHHHhCCCC------
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------GRSRQRILTFAAKRYANAIERNPED------ 157 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~A~~~~~~al~~~p~~------ 157 (365)
..++..+|.++. ..|++++|+.++++++...+. .+...|++++|+..+++++.+.|..
T Consensus 14 ~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 356777888884 999999999999999887643 2345699999999999999986543
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
..++.++|.++...|+ +++|+.+|++++.+. |....++.++|.++.. .|++++|
T Consensus 93 ~~~~~~la~~~~~~G~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 154 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGF--------------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEA 154 (373)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHH
Confidence 2347899999999999 999999999999875 3456788899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC--CCHHHHH---
Q 017806 230 EELWKQATKNYEKAVQLNWN-----SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF--DFHRAIY--- 299 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~--- 299 (365)
+ ..+++++.+.+. ...++.++|.++...|++ ++|+.++++++.+.+ .+...+.
T Consensus 155 ~-------~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 155 E-------ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL----------DNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp H-------HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred H-------HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 9 556666666554 356889999999999996 999999999998733 2211121
Q ss_pred --HHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 300 --NLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 300 --~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
.++.++...|+...+......+..
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 344557788888777655444443
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.50 E-value=2.6e-14 Score=131.47 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=78.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY-----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~ 196 (365)
++..|++++|+.+|++++.+.|.+. .+|+++|.++..+|+ |++|+.+|+
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~--------------~~~A~~~~~ 254 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR--------------YDEAIGHCN 254 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC--------------CHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHH
Confidence 3455677888888888888777765 489999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhH
Q 017806 197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276 (365)
Q Consensus 197 ~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 276 (365)
++++++|++..+|+++|.++.. +|++++|+ .+|+++++++|++..++.+++.+.......
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~-------~~l~~al~l~p~~~~a~~~L~~l~~~~~~~--------- 314 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAE----LGQMDSAR-------DDFRKAQKYAPDDKAIRRELRALAEQEKAL--------- 314 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHT----TTCHHHHH-------HHHHHTTC-------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999 99999999 889999999999999999999996655443
Q ss_pred HHHHHHHHHHHHHhCCCCHH
Q 017806 277 VRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~ 296 (365)
++++...|.+++...|+++.
T Consensus 315 ~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhCCCCCCCC
Confidence 48999999999999998754
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=1.9e-13 Score=107.14 Aligned_cols=112 Identities=11% Similarity=0.036 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
.+.++.+||.+++. .|+|++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+..|
T Consensus 7 ~A~a~~~lG~~~~~----~~~~~~A~-------~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYK----QKDFEKAH-------VHYDKAIELDPSNITFYNNKAAVYFEEKKF----------AECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHhHHHHHHHhhhH----------HHHHHHH
Confidence 45678999999999 99999999 789999999999999999999999999996 9999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHH
Q 017806 285 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 285 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 349 (365)
+++++++|++...+..++.++..+|....+.+. |..+..+|.++....|+...
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~------------~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQND------------LSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCcCHHH
Confidence 999999988755444444444444443333332 36677788888888776543
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.50 E-value=4.6e-14 Score=108.75 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRL---CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
|++++|+.+|++++++ +|+++.+++++|.++.. .|++++|+ ..|+++++++|+++.+++++|.++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAE-------AVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4599999999999999 68999999999999999 99999999 8899999999999999999999999
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
.+|++ ++|+..|++++...|+++.+......+....+
T Consensus 73 ~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 73 NLGRY----------EQGVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHTCH----------HHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99996 99999999999999999887665555544443
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.50 E-value=2e-13 Score=122.66 Aligned_cols=158 Identities=11% Similarity=-0.031 Sum_probs=124.2
Q ss_pred hcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCCC------HHHH
Q 017806 104 SQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPED------YDAL 161 (365)
Q Consensus 104 ~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~~------~~~~ 161 (365)
.....+. ..|++++|+..+++++...+. .+...+++++|+.+|++++.+.+.. ..++
T Consensus 80 ~~i~~~~-~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLC-KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3355563 889999999999999886532 1223369999999999999975443 3479
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
.++|.+|..+|+ +++|+.+|++++++ .+....+++++|.++.. +|++++|+.+++
T Consensus 159 ~~lg~~y~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~ 220 (293)
T 3u3w_A 159 NAIANIYAENGY--------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHH
Confidence 999999999999 99999999999953 12245689999999999 999999997666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
+|+...... ...+..+.+++++|.+|..+|+. +++|+.+|++|+.+
T Consensus 221 ~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~---------~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 221 KAIEISCRI-NSMALIGQLYYQRGECLRKLEYE---------EAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHT-TBCTTHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CcHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHH
Confidence 665544331 22233488999999999999953 49999999999976
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.49 E-value=6.1e-14 Score=108.04 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIER---NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
.|++++|+.+|++++++ +|++..+++++|.++..+|+ +++|+.+|+++++++|+++.+++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l~ 68 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------------YRKAEAVLANGVKQFPNHQALRVFYA 68 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 57889999999999999 68899999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
.++.. .|++++|+ ..|++++..+|+++.+......+....+
T Consensus 69 ~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 69 MVLYN----LGRYEQGV-------ELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHH----HTCHHHHH-------HHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999 99999999 7799999999999887654444444433
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.9e-13 Score=107.66 Aligned_cols=119 Identities=16% Similarity=0.037 Sum_probs=101.7
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQE 170 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~ 170 (365)
..+.+...++.+|..++ . .|++++|+.+|+++++.+|++ ..++.++|.++..
T Consensus 23 ~~~~~~~~~~~~a~~~~-~------------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~ 77 (148)
T 2dba_A 23 PGASSVEQLRKEGNELF-K------------------------CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK 77 (148)
T ss_dssp TTCCCHHHHHHHHHHHH-T------------------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-H------------------------hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 34566777888887773 3 455666666677777777766 8899999999999
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
.|+ +++|+.+|++++.++|++..+++++|.++.. .|++++|+ .+|+++++++|++
T Consensus 78 ~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~al~~~p~~ 132 (148)
T 2dba_A 78 LED--------------YDKAETEASKAIEKDGGDVKALYRRSQALEK----LGRLDQAV-------LDLQRCVSLEPKN 132 (148)
T ss_dssp TTC--------------HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCSSC
T ss_pred Hcc--------------HHHHHHHHHHHHhhCccCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCc
Confidence 999 9999999999999999999999999999999 99999999 8899999999999
Q ss_pred HHHHHHHHHHHH
Q 017806 251 PQALNNWGLALQ 262 (365)
Q Consensus 251 ~~~~~~lg~~~~ 262 (365)
..++..++.+..
T Consensus 133 ~~~~~~l~~~~~ 144 (148)
T 2dba_A 133 KVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999988887754
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.48 E-value=1.7e-14 Score=132.68 Aligned_cols=121 Identities=21% Similarity=0.114 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----------------DAFYNWAIAI 216 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~ 216 (365)
.+.....++.+|.+++..|+ |++|+.+|++++.+.|++. .+|+++|.++
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~ 240 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEK--------------LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSC--------------CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34456779999999999999 9999999999999999887 4899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
.. +|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+.+|+++++++|++..
T Consensus 241 ~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~a~~~~g~~----------~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 241 IK----LKRYDEAI-------GHCNIVLTEEEKNPKALFRRGKAKAELGQM----------DSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HT----TTCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHTTC-------
T ss_pred HH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHH
Confidence 99 99999999 789999999999999999999999999996 9999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 017806 297 AIYNLGTVLYGLA 309 (365)
Q Consensus 297 ~~~~lg~~~~~~g 309 (365)
++.+|+.+.....
T Consensus 300 a~~~L~~l~~~~~ 312 (338)
T 2if4_A 300 IRRELRALAEQEK 312 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 9999998855443
No 172
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=4.8e-13 Score=123.96 Aligned_cols=182 Identities=14% Similarity=0.001 Sum_probs=142.5
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhC--------CC
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERN--------PE 156 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~--------p~ 156 (365)
++..+|.++. ..|++++|+.++++++.+.+. .+...|++++|+.+|++++++. |.
T Consensus 55 ~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 55 ATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 6788999994 999999999999999987543 2455699999999999999975 34
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
...++.++|.++...|+ +++|+.++++++.+.+. ...++.++|.++.. .|++++|+.
T Consensus 134 ~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 195 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWAR--------------LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARS 195 (373)
T ss_dssp HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 46678899999999999 99999999999999775 35688999999999 999999995
Q ss_pred HHHHHHHHHHHHHhcC--CCCHHHHH-----HHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC----HHHHHH
Q 017806 232 LWKQATKNYEKAVQLN--WNSPQALN-----NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF----HRAIYN 300 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~--p~~~~~~~-----~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~ 300 (365)
. +++++.+. ++.+..+. .++.++...|++ ++|..++++++...|.. ...+..
T Consensus 196 ~-------l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 196 Q-------LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK----------AAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp H-------HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred H-------HHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH----------HHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 5 55555432 22222222 344557788886 99999999998876643 335678
Q ss_pred HHHHHHHhhhhhhhhcCc
Q 017806 301 LGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 301 lg~~~~~~g~~~~a~~~~ 318 (365)
+|.++...|+..++....
T Consensus 259 la~~~~~~g~~~~A~~~l 276 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVL 276 (373)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 899999888877665543
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=9.1e-13 Score=102.11 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=97.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-------HH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-------HD 207 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 207 (365)
...|++++|+.+|++++..+|.+..+++++|.++...|+ +++|+.+|++++.+.|.+ ..
T Consensus 15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------------YNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHhhccccchhHHHHHH
Confidence 456788999999999999999999999999999999999 999999999999998877 99
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+++++|.++.. .|++++|+ ..|+++++.+| +...+..++.++..+++.
T Consensus 81 ~~~~la~~~~~----~~~~~~A~-------~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 81 AYARIGNSYFK----EEKYKDAI-------HFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----hccHHHHH-------HHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999 99999999 77899999998 689999999988877653
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=5.6e-13 Score=100.44 Aligned_cols=106 Identities=19% Similarity=0.137 Sum_probs=94.4
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN 174 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 174 (365)
+|+++.+++.+|.++ ...|++++|+.+|+++++.+|.+..+++++|.++...|+
T Consensus 2 ~p~~~~~~~~~~~~~-------------------------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~- 55 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQ-------------------------YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER- 55 (112)
T ss_dssp CCSSTTGGGGHHHHH-------------------------HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-
T ss_pred CCCcHHHHHHHHHHH-------------------------HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-
Confidence 466666777777666 345678888888899999999999999999999999999
Q ss_pred cccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 175 VSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 175 ~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~-g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
+++|+.+|+++++++|. +..+++++|.++.. . |++++|+ +.+++++..+|.+
T Consensus 56 -------------~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~-------~~~~~~~~~~p~~ 110 (112)
T 2kck_A 56 -------------YEEAVDCYNYVINVIEDEYNKDVWAAKADALRY----IEGKEVEAE-------IAEARAKLEHHHH 110 (112)
T ss_dssp -------------HHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT----CSSCSHHHH-------HHHHHHGGGCCCC
T ss_pred -------------HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH----HhCCHHHHH-------HHHHHHhhcccCC
Confidence 99999999999999999 99999999999999 9 9999999 7899999998875
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.43 E-value=4.9e-12 Score=98.35 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=95.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HD 207 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 207 (365)
++..|++++|+..|+++++.+|++. .+++.+|.++...|+ +++|+.+|++++..+|++ +.
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~ 77 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--------------FQLAEAQFRDLVSRYPTHDKAAG 77 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTSTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHCCCCcccHH
Confidence 3566889999999999999999988 899999999999999 999999999999999999 89
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+++.+|.++.. .|++++|+ ..|++++..+|++..+...+..+-.-.+
T Consensus 78 ~~~~la~~~~~----~g~~~~A~-------~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 78 GLLKLGLSQYG----EGKNTEAQ-------QTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999 99999999 7799999999999887776665554443
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.41 E-value=1.7e-12 Score=109.08 Aligned_cols=153 Identities=9% Similarity=0.032 Sum_probs=116.6
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------CCCCHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------CPTLHDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~ 208 (365)
+..|++++|+..++......+....++..+|.++...|+ +++|+.+|++++.+ .+....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDR--------------FDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345788888885554444333678899999999999999 99999999999994 4456788
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
+.++|.++.. .|++++|+..+++|+..++. ...++ ....+++++|.++..+|++ ++|+.+|+++
T Consensus 69 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~a 133 (203)
T 3gw4_A 69 LHQVGMVERM----AGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDL----------AGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHH
Confidence 9999999999 99999999777666666542 11022 3467899999999999996 9999999999
Q ss_pred HHhCC--CC----HHHHHHHHHHHHHhhhhhhhhc
Q 017806 288 IQLQF--DF----HRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 288 l~~~p--~~----~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
+.+.+ .+ ..++.++|.++...|+...+..
T Consensus 134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 97632 22 3456899999999997764443
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.40 E-value=1.7e-12 Score=120.78 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=100.9
Q ss_pred hhhhhhhHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIE----------------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~ 196 (365)
.++..|++++|+.+|+++++ ++|.+..+|.++|.++..+|+ +++|+.+|+
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------~~~A~~~~~ 297 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------------WQGAVDSCL 297 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------------HHHHHHHHH
Confidence 34556777777777777777 788889999999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 197 ~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++++++|+++.+++++|.++.. +|++++|+ ..|+++++++|++..++..++.++..+++.
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~-------~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQG----LKEYDQAL-------ADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999 889999999999999999999999999885
No 178
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.38 E-value=1.7e-11 Score=127.17 Aligned_cols=213 Identities=14% Similarity=0.034 Sum_probs=145.9
Q ss_pred cCCChhHhhhcHHHHHHHHHHhhccChh--hhh-hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCC
Q 017806 105 QGNTPHQLAEQNNAAMELINSVTGVDEE--GRS-RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (365)
Q Consensus 105 ~g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~ 181 (365)
.|.++ ...|.+++|...|+++-..... .+. ..+++++|+++++++ +.+.+|+.+|.++...|+
T Consensus 1055 IA~Ia-i~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~-------- 1120 (1630)
T 1xi4_A 1055 IANIA-ISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGM-------- 1120 (1630)
T ss_pred HHHHH-HhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC--------
Confidence 38888 5999999999999998633321 222 347788888777755 679999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------H
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK----------------------N 239 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~----------------------~ 239 (365)
+++|+.+|.++ +++..|..+|.++.+ .|+|++|+++|..|++ .
T Consensus 1121 ------~kEAIdsYiKA-----dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1121 ------VKEAIDSYIKA-----DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred ------HHHHHHHHHhc-----CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH
Confidence 99999999886 889999999999999 9999999988866542 1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH----------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPARE----------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
++..+ +..+...|.++|..+...|+++.|.. +.|+|++|++++++| .+..+|...+.
T Consensus 1186 le~fI--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1186 LEEFI--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCF 1258 (1630)
T ss_pred HHHHH--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 22222 22344566678888888888755554 556677777777776 45577777777
Q ss_pred HHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 304 VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
++...|+...|...... +...+.. +..+..+|...+.++.....++.+++
T Consensus 1259 acve~~Ef~LA~~cgl~-Iiv~~de-Leeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-IVVHADE-LEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-hhcCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77776666666554332 3233332 22333333444444444444444433
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.38 E-value=4e-12 Score=106.80 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=106.2
Q ss_pred hhhhhHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---CCC-
Q 017806 135 SRQRILTFAAKRYANAIE------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---CPT- 204 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---~p~- 204 (365)
...|++++|+.+|++++. ..+....++.++|.++...|+ +++|+.+|++++.+ .++
T Consensus 37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------------WDAARRCFLEERELLASLPED 102 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHcCcc
Confidence 444666777777777766 334557789999999999999 99999999999998 442
Q ss_pred ---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 205 ---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 205 ---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
...++.++|.++.. .|++++|+..+++|+...+.. ........++.++|.++...|++ ++|+
T Consensus 103 ~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~ 167 (203)
T 3gw4_A 103 PLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQA-DDQVAIACAFRGLGDLAQQEKNL----------LEAQ 167 (203)
T ss_dssp HHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHCcCH----------HHHH
Confidence 35679999999999 999999997777766654331 00011245678999999999996 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
.+|++++++...... ....+.++..++
T Consensus 168 ~~~~~al~~~~~~~~-~~~~~~~~~~~~ 194 (203)
T 3gw4_A 168 QHWLRARDIFAELED-SEAVNELMTRLN 194 (203)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHhccc
Confidence 999999988432211 123444444444
No 180
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.38 E-value=9.1e-12 Score=95.19 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch
Q 017806 190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP 269 (365)
Q Consensus 190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 269 (365)
+|+..|+++++.+|+++.+++++|.++.. .|++++|+ ..|+++++++|++..+|+++|.+|...|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~-- 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAAL-------PHLRAALDFDPTYSVAWKWLGKTLQGQGDR-- 69 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCH--
Confidence 57899999999999999999999999999 99999999 779999999999999999999999999996
Q ss_pred hHHhhhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhhhh
Q 017806 270 AREKQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~ 312 (365)
++|+..|++++.++| .+......+...+..+++..
T Consensus 70 --------~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 70 --------AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcccc
Confidence 999999999999987 45677778888887777543
No 181
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.34 E-value=1.3e-11 Score=94.34 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 017806 142 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 142 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 221 (365)
.|+..|+++++.+|+++.+++++|.++...|+ +++|+.+|++++.++|++..+|+++|.++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 65 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------------FDAALPHLRAALDFDPTYSVAWKWLGKTLQG--- 65 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---
Confidence 57899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcC
Q 017806 222 MRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSA 266 (365)
Q Consensus 222 ~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~ 266 (365)
.|++++|+ ..|+++++++|. +......+...+..+++
T Consensus 66 -~g~~~~A~-------~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 66 -QGDRAGAR-------QAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp -HTCHHHHH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHH-------HHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 99999999 667777776663 45666666666666655
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.1e-12 Score=97.50 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
+..+++.+|.++...|+ +++|+.+|+++++++|+++.+++++|.++.. .|++++|+
T Consensus 3 ~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~------ 58 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL--------------YREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAI------ 58 (111)
T ss_dssp HHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred hHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHH------
Confidence 46789999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCc
Q 017806 237 TKNYEKAVQLNWNS------PQALNNWGLALQELSAI 267 (365)
Q Consensus 237 ~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~ 267 (365)
..|+++++++|++ ..+++++|.++..+|++
T Consensus 59 -~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 59 -QMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp -HHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999 99999999999999987
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.31 E-value=2.4e-11 Score=88.13 Aligned_cols=85 Identities=32% Similarity=0.411 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+..+++.+|.++...|+ +++|+.+|++++.++|++..+++++|.++.. .|++++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~----- 63 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAI----- 63 (91)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred ccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHH-----
Confidence 457889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
..|+++++++|+++.++.++|.++...|
T Consensus 64 --~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 64 --EYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 7899999999999999999999998765
No 184
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.31 E-value=1.5e-10 Score=120.26 Aligned_cols=189 Identities=13% Similarity=0.044 Sum_probs=123.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
....+.+.+|+.+|..+ ...|++++|++.|.++ .++. ++...|++++|+++|..+.+..++. .+...+|
T Consensus 1099 Aervn~p~vWsqLAKAq-l~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~La 1174 (1630)
T 1xi4_A 1099 AERCNEPAVWSQLAKAQ-LQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELI 1174 (1630)
T ss_pred HHhcCCHHHHHHHHHHH-HhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHH
Confidence 34567799999999999 6999999999999987 3333 3455699999999999988766431 1122344
Q ss_pred HHHHHhcCcccc--------------CCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 166 LVLQESADNVSL--------------DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 166 ~~~~~~~~~~~a--------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.+|.++++.... .|......|+|++|+.+|.++ ..|..+|.++.+ +|++++|++
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk----Lge~q~AIE 1242 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH----LGEYQAAVD 1242 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH----hCCHHHHHH
Confidence 444444331000 111111112277777777765 367777777777 777777774
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH--------------------hhhHHHHHHHHHHHHHHhC
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE--------------------KQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~--------------------~~~~~~~A~~~~~~al~~~ 291 (365)
. +++| ++..+|...+.++...|++..|.. +.|.|++|+.+|++++.++
T Consensus 1243 a-------arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1243 G-------ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred H-------HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4 4444 334555544444443333322221 4455799999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 017806 292 FDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 292 p~~~~~~~~lg~~~~~~g 309 (365)
+.+...+..||.++.+-.
T Consensus 1311 raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred hhHhHHHHHHHHHHHhCC
Confidence 999999999999988655
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=9.2e-12 Score=99.86 Aligned_cols=147 Identities=14% Similarity=0.016 Sum_probs=108.8
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccC
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
..++..+|.++. ..|++++|+.+|++++...+... +. .....++.++|.++...|+
T Consensus 9 ~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~----~~--------------~~~~~~~~~l~~~~~~~g~----- 64 (164)
T 3ro3_A 9 GRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFG----DK--------------AAERIAYSNLGNAYIFLGE----- 64 (164)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHT----CH--------------HHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhC----Cc--------------hHHHHHHHHHHHHHHHcCC-----
Confidence 355677777773 66666666666666554432210 00 0113578999999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
+++|+.+|++++.+.+.. ..++.++|.++.. .|++++|+..+++++...... ...+....
T Consensus 65 ---------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~ 130 (164)
T 3ro3_A 65 ---------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQEL-KDRIGEGR 130 (164)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHc-cchHhHHH
Confidence 999999999999986543 6789999999999 999999997777776655432 11123467
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
++.++|.++...|++ ++|+.+|++++++...
T Consensus 131 ~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 131 ACWSLGNAYTALGNH----------DQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHH
Confidence 899999999999996 9999999999987543
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.8e-11 Score=92.31 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
++..++.+|.++.. .|++++|+ ..|+++++++|+++.+|+++|.++..+|++ ++|+..|
T Consensus 3 ~~~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK----QGLYREAV-------HCYDQLITAQPQNPVGYSNKAMALIKLGEY----------TQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHH
Confidence 46789999999999 99999999 779999999999999999999999999996 9999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 285 RAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 285 ~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
++++.++|++ ..+++.+|.++..+|+...+...+
T Consensus 62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 9999999999 999999999999999777666544
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=2.9e-11 Score=87.72 Aligned_cols=85 Identities=28% Similarity=0.325 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 204 ~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
.++.+++.+|.++.. .|++++|+ .+|+++++.+|+++.+++++|.++...|++ ++|+.+
T Consensus 7 ~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~ 65 (91)
T 1na3_A 7 NSAEAWYNLGNAYYK----QGDYDEAI-------EYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHH
T ss_pred ccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHhhH----------HHHHHH
Confidence 467899999999999 99999999 779999999999999999999999999996 999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 284 FRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 284 ~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
|++++.++|+++.++.++|.++...|
T Consensus 66 ~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999998764
No 188
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.28 E-value=1.6e-12 Score=121.46 Aligned_cols=200 Identities=14% Similarity=0.038 Sum_probs=82.1
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 169 (365)
+++.+|+.+|..+. ..|++++|++.|.++- ++. .....|++++|+.+++.+++..++ +.+...++.+|.
T Consensus 30 ~~~~vWs~La~A~l-~~g~~~eAIdsfika~--D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQL-QKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHH-HcCCHHHHHHHHHcCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 44579999999994 9999999999998863 333 234459999999999999986444 777889999999
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
++|+ +.+++++++. | +..+|.++|..+.. .|+|++|+ ..|.++
T Consensus 106 Klg~--------------l~e~e~f~~~-----p-n~~a~~~IGd~~~~----~g~yeeA~-------~~Y~~a------ 148 (449)
T 1b89_A 106 KTNR--------------LAELEEFING-----P-NNAHIQQVGDRCYD----EKMYDAAK-------LLYNNV------ 148 (449)
T ss_dssp ---C--------------HHHHTTTTTC-----C---------------------CTTTHH-------HHHHHT------
T ss_pred HhCC--------------HHHHHHHHcC-----C-cHHHHHHHHHHHHH----cCCHHHHH-------HHHHHh------
Confidence 9999 9998888853 4 44699999999999 99999999 556654
Q ss_pred CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchH
Q 017806 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNEL 329 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (365)
..|..+|.++.++|++ ++|++.|+++ +++.+|..++.++...|++..+...... +...|...
T Consensus 149 --~n~~~LA~~L~~Lg~y----------q~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l 210 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEY----------QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL 210 (449)
T ss_dssp --TCHHHHHHHHHTTTCH----------HHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHH
T ss_pred --hhHHHHHHHHHHhccH----------HHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhH
Confidence 5789999999999996 9999999999 5789999999999999999888766553 44555542
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 330 YSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 330 ~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
. .+..+|.+++..+.....++.++++
T Consensus 211 ~-~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 211 E-ELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred H-HHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 2 2333445555554444555555444
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.24 E-value=6.8e-11 Score=94.65 Aligned_cols=127 Identities=16% Similarity=0.090 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..++..+|.++...|+ +++|+.+|++++.+.+.. ..++.++|.++.. .|++++|+.
T Consensus 9 ~~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 70 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASE 70 (164)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 5678999999999999 999999999999986542 2589999999999 999999997
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD------FHRAIYNLGTVL 305 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~ 305 (365)
.+++|+..+... ...+....++.++|.++...|++ ++|+.+|++++.+.+. ...++.++|.++
T Consensus 71 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 71 YYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 777666655442 11111367899999999999996 9999999999987422 256788899999
Q ss_pred HHhhhhhh
Q 017806 306 YGLAEDTL 313 (365)
Q Consensus 306 ~~~g~~~~ 313 (365)
...|+...
T Consensus 140 ~~~g~~~~ 147 (164)
T 3ro3_A 140 TALGNHDQ 147 (164)
T ss_dssp HHHTCHHH
T ss_pred HHccCHHH
Confidence 99886653
No 190
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.24 E-value=1.3e-11 Score=115.25 Aligned_cols=168 Identities=12% Similarity=0.074 Sum_probs=88.0
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
.++.++...+..+ ...|++++|+.+++.++...+. ++.+.|++.++.++++ .| +..+|..+|..
T Consensus 59 ~D~~~y~~V~~~a-e~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~ 131 (449)
T 1b89_A 59 DDPSSYMEVVQAA-NTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDR 131 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-----CC------------
T ss_pred CCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHH
Confidence 4667889999999 6999999999999999875322 5666788988888775 24 34589999999
Q ss_pred HHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 168 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
++..|+ |++|+.+|.++ ..|..+|.++.. +|++++|+ +.|+++
T Consensus 132 ~~~~g~--------------yeeA~~~Y~~a--------~n~~~LA~~L~~----Lg~yq~AV-------ea~~KA---- 174 (449)
T 1b89_A 132 CYDEKM--------------YDAAKLLYNNV--------SNFGRLASTLVH----LGEYQAAV-------DGARKA---- 174 (449)
T ss_dssp -----C--------------TTTHHHHHHHT--------TCHHHHHHHHHT----TTCHHHHH-------HHHHHH----
T ss_pred HHHcCC--------------HHHHHHHHHHh--------hhHHHHHHHHHH----hccHHHHH-------HHHHHc----
Confidence 999999 88888888876 468888888888 88888888 556665
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHH--------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 248 WNSPQALNNWGLALQELSAIVPARE--------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~--------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+++.+|...+.++...|++..|.. +.|.+++|+.++++++.+++.+..++..||.+|.+
T Consensus 175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred -CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 366777777777777776554432 56778999999999999999999999999999976
Q ss_pred hh
Q 017806 308 LA 309 (365)
Q Consensus 308 ~g 309 (365)
-.
T Consensus 254 y~ 255 (449)
T 1b89_A 254 FK 255 (449)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 191
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=3.7e-10 Score=101.08 Aligned_cols=160 Identities=12% Similarity=-0.033 Sum_probs=127.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHH
Q 017806 135 SRQRILTFAAKRYANAIERNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~ 208 (365)
...|++++|++.+.+++..+| ++.+++..++.++..+|+ .+.|.+.+++..+.+|+ +-.+
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--------------~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--------------VSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCccccccchHH
Confidence 445778888888888888886 888999999999999999 99999999999999993 2344
Q ss_pred HHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 209 FYNWAIA--ISDRAKMRG--RTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 209 ~~~lg~~--~~~~~~~~g--~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
...|+.+ ... .| ++.+|. ..|+++.+..|+ ....+++ ++..+|++ ++|.+
T Consensus 177 l~~Laea~v~l~----~g~~~~q~A~-------~~f~El~~~~p~~~~~~lLln---~~~~~g~~----------~eAe~ 232 (310)
T 3mv2_B 177 ILNLAESYIKFA----TNKETATSNF-------YYYEELSQTFPTWKTQLGLLN---LHLQQRNI----------AEAQG 232 (310)
T ss_dssp HHHHHHHHHHHH----HTCSTTTHHH-------HHHHHHHTTSCSHHHHHHHHH---HHHHHTCH----------HHHHH
T ss_pred HHHHHHHHHHHH----hCCccHHHHH-------HHHHHHHHhCCCcccHHHHHH---HHHHcCCH----------HHHHH
Confidence 4555444 555 55 899998 779998887776 2334444 89999996 99999
Q ss_pred HHHHHHHh----------CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 283 KFRAAIQL----------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 283 ~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
.++++++. +|+++.++.|+..+...+|+ .+..++.++...+|+.+....
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---------------------~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL---------------------DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---------------------TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh---------------------HHHHHHHHHHHhCCCChHHHH
Confidence 99988876 58999999999999999985 145677888888888765544
Q ss_pred H
Q 017806 353 A 353 (365)
Q Consensus 353 a 353 (365)
-
T Consensus 292 ~ 292 (310)
T 3mv2_B 292 H 292 (310)
T ss_dssp H
T ss_pred H
Confidence 3
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.19 E-value=1.6e-10 Score=86.06 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=77.9
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 201 ~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
.+|+++.+++++|.++.. .|++++|+ ..|+++++++|+++.+|+++|.+|..+|++ ++|
T Consensus 2 ~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A 60 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK----HDNASRAL-------ALFEELVETDPDYVGTYYHLGKLYERLDRT----------DDA 60 (100)
T ss_dssp ---CCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHH
T ss_pred CCccCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHH
Confidence 479999999999999999 99999999 889999999999999999999999999996 999
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHhhhh
Q 017806 281 ISKFRAAIQLQF--DFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 281 ~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~ 311 (365)
+..|++++++.| .+......+..++...+..
T Consensus 61 ~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHcccc
Confidence 999999999876 4566677777777766643
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.18 E-value=2.2e-10 Score=85.40 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=73.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.+|+++.+++.+|.++...|+ +++|+.+|+++++++|+++.+|+++|.++.. .|++++|+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~-- 61 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDN--------------ASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAI-- 61 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHH--
T ss_pred CCccCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH--
Confidence 479999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcC
Q 017806 233 WKQATKNYEKAVQLNWN--SPQALNNWGLALQELSA 266 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~ 266 (365)
..|++++++.|+ +......+..++...+.
T Consensus 62 -----~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 62 -----DTYAQGIEVAREEGTQKDLSELQDAKLKAEG 92 (100)
T ss_dssp -----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHhhhhcCCchhHHHHHHHHHHHccc
Confidence 556666666543 45555556666655554
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.16 E-value=9.2e-11 Score=86.81 Aligned_cols=92 Identities=24% Similarity=0.294 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.+.+|.++...|+ +++|+..|+++++++|+++. +++++|.++.. .|++++|+ ..
T Consensus 3 ~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~-------~~ 57 (99)
T 2kc7_A 3 QLKTIKELINQGD--------------IENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKAL-------NN 57 (99)
T ss_dssp THHHHHHHHHHTC--------------HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHH-------HH
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence 3678999999999 99999999999999999999 99999999999 99999999 88
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
|+++++++|++..++.+ +. +.+++.+|++++..+|++.
T Consensus 58 ~~~al~~~p~~~~~~~~--------~~----------~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 58 YQSAIELNPDSPALQAR--------KM----------VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHCTTSTHHHHH--------HH----------HHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHhcCCCcHHHHHH--------HH----------HHHHHHHHHHHhccCcccc
Confidence 99999999999998855 34 3888999999888887653
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.3e-10 Score=107.85 Aligned_cols=185 Identities=9% Similarity=-0.062 Sum_probs=133.6
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------hhhhhhhHHHHHHHHHHHHHh
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------------------GRSRQRILTFAAKRYANAIER 153 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------------------~~~~~~~~~~A~~~~~~al~~ 153 (365)
+....|..+. ..|++++|++.|.+++...+. .+...|++++|+++|.+++..
T Consensus 6 ~~l~~a~~l~-~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 6 SKLEEARRLV-NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344444452 677777777777777766543 245669999999999999987
Q ss_pred CCCCHH------HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHH
Q 017806 154 NPEDYD------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP------TLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 154 ~p~~~~------~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~ 221 (365)
.+.... +...+|.++...|+ +++|+.++++++.+.+ ....++.+||.++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 147 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDS--------------LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ--- 147 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSC--------------HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH---
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH---
Confidence 665432 45667788777788 9999999999988633 347789999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC---C----
Q 017806 222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD---F---- 294 (365)
Q Consensus 222 ~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~---- 294 (365)
.|+|.+|+..+++++..+.+. ...+....++.++|.+|..+|++ ++|..+|++++...+. .
T Consensus 148 -~g~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 148 -KKQYKDSLALINDLLREFKKL-DDKPSLVDVHLLESKVYHKLRNL----------AKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp -HTCHHHHHHHHHHHHHHHTTS-SCSTHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred -ccChHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHhhcCCCchHHH
Confidence 999999997766655443321 12344578999999999999996 9999999999987432 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 017806 295 HRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~ 315 (365)
...+..+|.++...++...+.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 234555555555555554443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.15 E-value=1.4e-09 Score=86.23 Aligned_cols=127 Identities=18% Similarity=0.136 Sum_probs=103.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..+++++|+.+|+++.+.+.. .+. +|.+|...+. +++|+.+|+++.+. .++.++++||.+
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~--------------~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 66 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQIN--------------KQKLFQYLSKACEL--NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCC--------------HHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 357899999999999998744 444 9999998888 89999999999987 689999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
|..-.-..+++++|+ .+|+++.+. .++.+++++|.+|.. .+++ ++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~-------~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~----------~~A~~~~~~Aa~~- 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAA-------QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE----------KQAVKTFEKACRL- 126 (138)
T ss_dssp HHHCSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT-
T ss_pred HHcCCCCCccHHHHH-------HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCH----------HHHHHHHHHHHHC-
Confidence 975000036778888 778888876 789999999999999 7775 9999999999987
Q ss_pred CCCHHHHHHHHH
Q 017806 292 FDFHRAIYNLGT 303 (365)
Q Consensus 292 p~~~~~~~~lg~ 303 (365)
.++.+..+|+.
T Consensus 127 -g~~~A~~~l~~ 137 (138)
T 1klx_A 127 -GSEDACGILNN 137 (138)
T ss_dssp -TCHHHHHHC--
T ss_pred -CCHHHHHHHhh
Confidence 46677776654
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.09 E-value=3.8e-10 Score=108.26 Aligned_cols=129 Identities=11% Similarity=-0.066 Sum_probs=107.8
Q ss_pred hhhhhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----
Q 017806 135 SRQRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----- 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----- 201 (365)
..+|+|++|+..|++++++ .|++ ..++.+||.+|..+|+ |++|+.+|++++.+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA--------------YEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHS
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHHc
Confidence 4568899999999999985 3444 5678999999999999 99999999999987
Q ss_pred CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 202 CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 202 ~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
.|++ ...+++||.+|.. +|++++|+.+|++|+..+++.+.-+ |.......+++.++..++.+
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~---------- 451 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWH----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF---------- 451 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH----------
T ss_pred CCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH----------
Confidence 3444 5679999999999 9999999999999999999876432 33456677889999888885
Q ss_pred HHHHHHHHHHHHhC
Q 017806 278 RTAISKFRAAIQLQ 291 (365)
Q Consensus 278 ~~A~~~~~~al~~~ 291 (365)
++|...|+++.+..
T Consensus 452 ~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 452 RQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999986543
No 198
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.07 E-value=3.6e-09 Score=96.38 Aligned_cols=132 Identities=16% Similarity=0.066 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
.++.+|+.+|+++++++|+++.+|..++.++....... ............+... ..++..+|.++.++..++.++.
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~---~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l 288 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH---PLDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSAL 288 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC---CCchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHH
Confidence 56899999999999999999999999999987533200 0011111112223331 1234668999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
. .|++++|+ ..+++|+.++|+ ..+|..+|.++...|++ ++|++.|.+|+.++|...
T Consensus 289 ~----~gd~d~A~-------~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~----------~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 289 V----KGKTDESY-------QAINTGIDLEMS-WLNYVLLGKVYEMKGMN----------REAADAYLTAFNLRPGAN 344 (372)
T ss_dssp H----HTCHHHHH-------HHHHHHHHHCCC-HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCSHH
T ss_pred h----CCCHHHHH-------HHHHHHHhcCCC-HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCcC
Confidence 9 99999999 889999999974 78889999999999996 999999999999999864
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.9e-10 Score=104.97 Aligned_cols=155 Identities=3% Similarity=-0.063 Sum_probs=127.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDY-----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
...|+|++|++.|.++++.+|... .++.++|.+|...|+ +++|+++|.+
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------------~~~a~~~~~~ 80 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------------KDKLREFIPH 80 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------------HHHHHHHHHH
Confidence 456899999999999999988653 368899999999999 9999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH
Q 017806 198 ATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (365)
Q Consensus 198 al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 271 (365)
++.+.+.. ..+...+|.++.. .|+++.|+.++++++..... ....+....++.++|.+|...|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~---- 151 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKR-EKRVFLKHSLSIKLATLHYQKKQY---- 151 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHH-SSCCSSHHHHHHHHHHHHHHHTCH----
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHccCh----
Confidence 99886553 2356778888888 99999999888777776554 233445578999999999999996
Q ss_pred HhhhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 272 EKQTIVRTAISKFRAAIQL------QFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
.+|+..+++++.. .+....++.++|.++..+|+..++...+
T Consensus 152 ------~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 152 ------KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp ------HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 9999999999876 3444789999999999999888776554
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.03 E-value=2.4e-09 Score=93.77 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=101.4
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhc-----C
Q 017806 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMR-----G 224 (365)
Q Consensus 152 ~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~-----g 224 (365)
+.+|++++++++.|.+....-. +........+....|...++++++++|+ +..+|..||.+|.. . |
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~---~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~----vPp~~gG 218 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFA---LTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA----APESFGG 218 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHT---TSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH----SCTTTTC
T ss_pred HcCccccHHHHHHHHHHHHHHh---cCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh----CCCccCC
Confidence 3578899999999998866311 2233455677899999999999999999 67799999999988 8 9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHh-cCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
+.+.|. ++|++|++++|+. ..+++.+|..+... |+. ++|.+++++|+..+|.
T Consensus 219 d~ekA~-------~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~----------~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 219 GMEKAH-------TAFEHLTRYCSAHDPDHHITYADALCIPLNNR----------AGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHH-------HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH----------HHHHHHHHHHHHCCGG
T ss_pred CHHHHH-------HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH----------HHHHHHHHHHHcCCCC
Confidence 999999 8899999999975 99999999999885 885 9999999999999876
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=6.4e-09 Score=93.07 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=131.4
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh--h----------hhhhhhhHHHHHHHHHHHHHhCCC----CHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE--E----------GRSRQRILTFAAKRYANAIERNPE----DYD 159 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~--~----------~~~~~~~~~~A~~~~~~al~~~p~----~~~ 159 (365)
+....+++.+|.++ ...|++++|+.++.+++..++ . .+...|+.+.|.+.+++..+.+|+ +-.
T Consensus 97 ~~~~~~~~~la~i~-~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~ 175 (310)
T 3mv2_B 97 QNSPYELYLLATAQ-AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE 175 (310)
T ss_dssp CCCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCcHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH
Confidence 45566778999999 599999999999999988775 2 356679999999999999999993 233
Q ss_pred HHHHH--HHHHHHhc--CccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 160 ALYNW--ALVLQESA--DNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 160 ~~~~l--g~~~~~~~--~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.+..+ |++....| + +.+|...|+++.+..|+ ....+++ ++.. +|++++|.
T Consensus 176 ~l~~Laea~v~l~~g~~~--------------~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe--- 231 (310)
T 3mv2_B 176 MILNLAESYIKFATNKET--------------ATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQ--- 231 (310)
T ss_dssp HHHHHHHHHHHHHHTCST--------------TTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHH---
T ss_pred HHHHHHHHHHHHHhCCcc--------------HHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHH---
Confidence 34444 55566666 6 99999999999998887 3444444 7888 99999999
Q ss_pred HHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 234 KQATKNYEKAVQL----------NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 234 ~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
..++.+++. +|+++.++.|+..+...+|+ +|.++++++.+.+|+++.+..
T Consensus 232 ----~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk------------~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 232 ----GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL------------DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp ----HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC------------TTHHHHHHHHHTTCCCHHHHH
T ss_pred ----HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh------------HHHHHHHHHHHhCCCChHHHH
Confidence 557666655 58999999999999999885 567999999999999987654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.98 E-value=4.3e-09 Score=101.01 Aligned_cols=112 Identities=14% Similarity=-0.057 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 017806 188 LEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWG 258 (365)
Q Consensus 188 ~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 258 (365)
|++|+..|++++++ .|++ ...+++||.+|.. +|+|++|+.++++|+..+++.+--+ |+-+..+++||
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999987 3444 5679999999999 9999999999999999998876432 44567899999
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhhhhhh
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFH---RAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~ 313 (365)
.+|..+|++ ++|+.+|++|+.+ .|+++ ....+|+.++..++....
T Consensus 401 ~~~~~~G~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 401 LTNWHAGHI----------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCH----------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 9999999999976 56665 456678888888775543
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.97 E-value=1e-07 Score=86.87 Aligned_cols=161 Identities=14% Similarity=0.032 Sum_probs=117.5
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 149 NAIERNPEDYDAL--YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 149 ~al~~~p~~~~~~--~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
++...-|.+..+| +..|..+...++ ...+.+|+.+|++|++++|+++.+|..++.++..+.-..+..
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~-----------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~ 253 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGD-----------DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD 253 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCc
Confidence 3445567776654 556666665543 223799999999999999999999999999886522212122
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
......+..++... .++..+|.++.++..++..+...|++ ++|+..+++|+.++|+ +.+|..+|.++.
T Consensus 254 ~~~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd~----------d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 254 EKQLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVKGKT----------DESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp HHHHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 22233333343421 34577899999999999999999996 9999999999999975 788899999999
Q ss_pred HhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHH
Q 017806 307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
..|+.. .+...|.+|..++|....|.
T Consensus 322 ~~G~~~-------------------eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 322 MKGMNR-------------------EAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HTTCHH-------------------HHHHHHHHHHHHSCSHHHHH
T ss_pred HCCCHH-------------------HHHHHHHHHHhcCCCcChHH
Confidence 999764 45556678888888776543
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.90 E-value=1.4e-08 Score=74.75 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
.+.+|.++.. .|++++|+ ..|+++++.+|+++. +|+++|.+|..+|++ ++|+.+|+++
T Consensus 3 ~~~~a~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~a 61 (99)
T 2kc7_A 3 QLKTIKELIN----QGDIENAL-------QALEEFLQTEPVGKDEAYYLMGNAYRKLGDW----------QKALNNYQSA 61 (99)
T ss_dssp THHHHHHHHH----HTCHHHHH-------HHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence 3578889999 99999999 779999999999999 999999999999996 9999999999
Q ss_pred HHhCCCCHHHH--HHHHHHHH
Q 017806 288 IQLQFDFHRAI--YNLGTVLY 306 (365)
Q Consensus 288 l~~~p~~~~~~--~~lg~~~~ 306 (365)
+.++|++..++ ..++.++.
T Consensus 62 l~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 62 IELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp HHHCTTSTHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHH
Confidence 99999999888 44444443
No 205
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.85 E-value=6.9e-08 Score=96.17 Aligned_cols=184 Identities=12% Similarity=0.034 Sum_probs=149.5
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHH-HHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhC------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAM-ELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERN------ 154 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~-~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~------ 154 (365)
+...|..+..|+..+..+ ...|+.++|+ ..|.+|+...|.. ....|+++.|...|++++...
T Consensus 336 L~~~p~~~~lW~~ya~~~-~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 336 AQHVCFAPEIWFNMANYQ-GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHHTTTCHHHHHHHHHHH-HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 567889999999999988 5889999997 9999999988762 123489999999999999752
Q ss_pred -----CC-----------CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 017806 155 -----PE-----------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLHDAFYNWAIAIS 217 (365)
Q Consensus 155 -----p~-----------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~ 217 (365)
|. ...+|...+.+....|. .+.|...|.+|++. .+....+|...+.+..
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--------------l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--------------LAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 53 34578888888888888 99999999999998 5556778887777776
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC---
Q 017806 218 DRAKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD--- 293 (365)
Q Consensus 218 ~~~~~~g~-~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 293 (365)
. .++ ++.|. +.|+++++..|+++..|..++......|+. +.|..+|++|+...|+
T Consensus 481 ~----~~~d~e~Ar-------~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~----------~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 481 H----ISKDTKTAC-------KVLELGLKYFATDGEYINKYLDFLIYVNEE----------SQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp T----TTSCCHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHTTTSSSTTH
T ss_pred H----hCCCHHHHH-------HHHHHHHHHCCCchHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHhcCCHHH
Confidence 6 654 88998 778888888899999999999999999996 9999999999999883
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 017806 294 FHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~~ 311 (365)
...+|......-...|+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHcCCH
Confidence 345566565555556644
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=4.9e-08 Score=77.47 Aligned_cols=109 Identities=9% Similarity=0.001 Sum_probs=93.7
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG---RTKEAEELWKQATKNYEKAVQLN-W-NSPQALN 255 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g---~~~~A~~~~~~A~~~~~~al~~~-p-~~~~~~~ 255 (365)
.....+....+...|.+.+..++.+.++.+++|.++.+ .+ +..+++ ..++..++.+ | +..++++
T Consensus 7 ~~l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S~~~~~~~~gI-------~lLe~ll~~~~p~~~rd~lY 75 (152)
T 1pc2_A 7 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----SKYNDDIRKGI-------VLLEELLPKGSKEEQRDYVF 75 (152)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----CSSHHHHHHHH-------HHHHHHHHHSCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc----CCCHHHHHHHH-------HHHHHHHhcCCccchHHHHH
Confidence 34455678899999999999999999999999999998 88 555777 7789999888 7 5789999
Q ss_pred HHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 256 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 256 ~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
++|..+++++++ ++|+++++++|+++|+|..+...+..+-....+
T Consensus 76 ~LAv~~~kl~~Y----------~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 76 YLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999995 999999999999999999998877766655543
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.81 E-value=1.6e-07 Score=74.17 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE- 263 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~- 263 (365)
..++++|+.+|+++.+.....+. ||.+|.. .+.+++|+ .+|+++.+. +++.+++++|.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~----g~~~~~A~-------~~~~~Aa~~--g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNS----QINKQKLF-------QYLSKACEL--NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCT----TSCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHc----CCCHHHHH-------HHHHHHHcC--CCHHHHHHHHHHHHcC
Confidence 35599999999999998744444 9999988 88888877 778888876 789999999999998
Q ss_pred ---hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHH
Q 017806 264 ---LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA 340 (365)
Q Consensus 264 ---~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a 340 (365)
.+++ ++|+.+|+++.+. .++.++++||.+|..-. - ....+..+..+|.++
T Consensus 71 ~g~~~d~----------~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~-g--------------~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 71 KYVKKDL----------RKAAQYYSKACGL--NDQDGCLILGYKQYAGK-G--------------VVKNEKQAVKTFEKA 123 (138)
T ss_dssp SSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-S--------------SCCCHHHHHHHHHHH
T ss_pred CCCCccH----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCC-C--------------CCcCHHHHHHHHHHH
Confidence 6775 9999999999987 78999999999998621 0 011246678888888
Q ss_pred HhcCc
Q 017806 341 HALKP 345 (365)
Q Consensus 341 ~~~~~ 345 (365)
.+...
T Consensus 124 a~~g~ 128 (138)
T 1klx_A 124 CRLGS 128 (138)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77743
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.81 E-value=7.1e-08 Score=76.53 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-TLHDAFYNWAIA 215 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~ 215 (365)
+....+.+.|.+.+..++.+.++.+++|+++.+.++ .+.+++++..++..++.+ | ++.+++|+||..
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-----------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 557888999999999999999999999999999773 122889999999999999 7 578999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
+++ +|+|++|. ++++++++++|++..+....-.+-..
T Consensus 81 ~~k----l~~Y~~A~-------~y~~~lL~ieP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 81 NYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKA 117 (152)
T ss_dssp HHH----TSCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH----ccCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999 99999999 88999999999998887665554433
No 209
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.78 E-value=3.2e-07 Score=91.36 Aligned_cols=176 Identities=9% Similarity=-0.017 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhhccChhh----------hhhhhhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchh
Q 017806 116 NNAAMELINSVTGVDEEG----------RSRQRILTFAA-KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSK 184 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~ 184 (365)
.......|++++...|.. ....|+.++|+ ..|++++...|.+...|..++.+....|+
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~----------- 393 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK----------- 393 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-----------
Confidence 345567788888877651 12346778897 99999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 185 DALLEEACKKYDEATRL-----------CPT-----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
++.|...|++++.. .|. ...+|...+.+... .|..+.|. ..|.+
T Consensus 394 ---~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR-------~vf~~ 459 (679)
T 4e6h_A 394 ---IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASR-------KIFGK 459 (679)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHH-------HHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHH-------HHHHH
Confidence 99999999999975 253 34578888888877 88888888 66777
Q ss_pred HHhc-CCCCHHHHHHHHHHHHHhcC-cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 243 AVQL-NWNSPQALNNWGLALQELSA-IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 243 al~~-~p~~~~~~~~lg~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
|++. .+....+|...+.+-.+.++ . +.|...|+++++..|+++..|...+......|+...+...+..
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~----------e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDT----------KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCC----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7776 44557788877777777654 5 9999999999999999999998889888888887776666655
Q ss_pred CCCCCc
Q 017806 321 PREVSP 326 (365)
Q Consensus 321 ~~~~~~ 326 (365)
++...+
T Consensus 530 al~~~~ 535 (679)
T 4e6h_A 530 SIDKIS 535 (679)
T ss_dssp HTTTSS
T ss_pred HHHhcC
Confidence 555444
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.74 E-value=2.8e-07 Score=80.80 Aligned_cols=178 Identities=12% Similarity=0.015 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ccccCC------CCchhhhHHHHHHHHHHHH-------HH-----
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESAD-NVSLDS------TSPSKDALLEEACKKYDEA-------TR----- 200 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~a~~------~~~~~~~~~~~A~~~~~~a-------l~----- 200 (365)
+.-.+..++-.+..+|++...+...|..|..-+. ++...+ ....+...+..|...|.++ +.
T Consensus 48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~ 127 (301)
T 3u64_A 48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPG 127 (301)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4556777778888888887777666666655432 111100 0000111233333333333 32
Q ss_pred -------------------hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 017806 201 -------------------LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGL 259 (365)
Q Consensus 201 -------------------~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~ 259 (365)
.+|+++++++-.|.+....+...+.--.|+.....|...+++++++||+ +..+|..+|.
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~ 207 (301)
T 3u64_A 128 FTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTK 207 (301)
T ss_dssp HHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 2455677777777777552221111224666777888999999999999 6779999999
Q ss_pred HHHHh-----cCcchhHHhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh-hhhhhhhcCcCCCCCCCcchHHHH
Q 017806 260 ALQEL-----SAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNELYSQ 332 (365)
Q Consensus 260 ~~~~~-----~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 332 (365)
+|... |+. ++|..+|++|++++|+. ..+++..|..+... |+. ..
T Consensus 208 lY~~vPp~~gGd~----------ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~-------------------~~ 258 (301)
T 3u64_A 208 FYAAAPESFGGGM----------EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR-------------------AG 258 (301)
T ss_dssp HHHHSCTTTTCCH----------HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH-------------------HH
T ss_pred HHHhCCCccCCCH----------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH-------------------HH
Confidence 99995 786 99999999999999975 99999999998875 543 45
Q ss_pred HHHHHHHHHhcCcc
Q 017806 333 SAIYIAAAHALKPS 346 (365)
Q Consensus 333 a~~~~~~a~~~~~~ 346 (365)
+..++.++....|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66677777777665
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.74 E-value=3.3e-08 Score=93.32 Aligned_cols=99 Identities=12% Similarity=-0.012 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHH
Q 017806 186 ALLEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNN 256 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~ 256 (365)
|+|++|+..|++++++ .|++ ...+++||.+|.. +|+|++|+.++++++..+++.+-. .|+-+..+++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3499999999999986 4555 4679999999999 999999999999999999987643 2445668999
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-----CCCCHHHH
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFHRAI 298 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 298 (365)
+|.+|..+|++ ++|+..|++|+.+ .|+++.+.
T Consensus 388 La~~~~~qg~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 388 LGRLYMGLENK----------AAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHhccCH----------HHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999996 9999999999987 57776553
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.73 E-value=2.8e-08 Score=93.88 Aligned_cols=111 Identities=8% Similarity=-0.151 Sum_probs=91.4
Q ss_pred hhhhhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----
Q 017806 135 SRQRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----- 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----- 201 (365)
..+|+|++|+..|++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--------------~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--------------LEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHS
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhHHHHc
Confidence 4568899999999999985 3454 5678999999999999 99999999999986
Q ss_pred CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhc
Q 017806 202 CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELS 265 (365)
Q Consensus 202 ~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~ 265 (365)
.|++ ...+++||.+|.. +|++++|+.+|++|+..+++.+ .|+++ .++.+|+.+...++
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~----~g~~~eA~~~~~~Al~i~~~~l--G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLH----QGMFPQAMKNLRLAFDIMRVTH--GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHh
Confidence 3444 5679999999999 9999999999999999998876 45554 56677777776553
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.72 E-value=1.4e-07 Score=69.07 Aligned_cols=76 Identities=20% Similarity=0.006 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
+|+++.++..+|.+++..++. ...++|..++++++.++|+++.+++.+|.+++. .|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~-----------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai--- 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ-----------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAI--- 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT-----------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHH---
Confidence 689999999999999876540 115899999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH
Q 017806 234 KQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~ 251 (365)
..++++++.+|.++
T Consensus 64 ----~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 64 ----DTWVLLLDSNDPNL 77 (93)
T ss_dssp ----HHHHHHHTCCCTTC
T ss_pred ----HHHHHHHhhCCCCc
Confidence 78999999998843
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.72 E-value=5.7e-08 Score=91.78 Aligned_cols=107 Identities=11% Similarity=-0.059 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHH
Q 017806 188 LEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWG 258 (365)
Q Consensus 188 ~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg 258 (365)
|++|+..|++++++ .|++ ...+.+||.+|.. +|+|++|+.++++++..+++.+-- .|.-+..++++|
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 99999999999986 3444 5679999999999 999999999999999999987632 244566899999
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHh
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFHR---AIYNLGTVLYGL 308 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~~ 308 (365)
.+|..+|++ ++|+.+|++|+++ .|+++. ++.+|+.+...+
T Consensus 379 ~~~~~~g~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 379 KLQLHQGMF----------PQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999996 9999999999977 567654 456666666544
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.71 E-value=7e-08 Score=91.09 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----CC
Q 017806 137 QRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CP 203 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-----~p 203 (365)
.|+|++|+..|++++++ .|++ ..++.+||.+|..+|+ |++|+.+|++++.+ .|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------------WEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHSCS
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999985 4555 4568999999999999 99999999999986 34
Q ss_pred C---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 017806 204 T---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 204 ~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~ 254 (365)
+ -+..+++||.+|.. +|++++|+.+|++|+..+++.+ .|+++.+.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~----qg~~~eA~~~~~~Al~i~~~~l--G~~Hp~~~ 424 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMG----LENKAAGEKALKKAIAIMEVAH--GKDHPYIS 424 (433)
T ss_dssp SCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHT--CTTCHHHH
T ss_pred CChHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHc--CCCChHHH
Confidence 4 45679999999999 9999999999999999988765 56776554
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.68 E-value=1.2e-07 Score=69.31 Aligned_cols=72 Identities=15% Similarity=-0.026 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 202 CPTLHDAFYNWAIAISDRAKMRGR---TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 202 ~p~~~~~~~~lg~~~~~~~~~~g~---~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
+|+++.++..+|.+++. .++ .++|. ..++++++++|+++.+++.+|..++..|++ +
T Consensus 2 ~p~~~~~~~~~a~al~~----~~~~~~~~~A~-------~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y----------~ 60 (93)
T 3bee_A 2 NAVTATQLAAKATTLYY----LHKQAMTDEVS-------LLLEQALQLEPYNEAALSLIANDHFISFRF----------Q 60 (93)
T ss_dssp CCCCHHHHHHHHHHHHH----TTTTCCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------H
T ss_pred CCCCHHHHHHHHHHHHH----hcCCCCCHHHH-------HHHHHHHHHCcCCHHHHHHHHHHHHHcCCH----------H
Confidence 68999999999999987 665 68888 889999999999999999999999999996 9
Q ss_pred HHHHHHHHHHHhCCCC
Q 017806 279 TAISKFRAAIQLQFDF 294 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~ 294 (365)
+|+.+|+++++.+|.+
T Consensus 61 ~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 61 EAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHhhCCCC
Confidence 9999999999999884
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.66 E-value=3.7e-07 Score=68.19 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-------NWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
++.-++.+|..++. .|+|..|+ .+|+.|++. .+..+.++.++|.++.++|++
T Consensus 4 sa~dc~~lG~~~~~----~~~y~~A~-------~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~---------- 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYT----EADYYHTE-------LWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL---------- 62 (104)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------
T ss_pred CHHHHHHHHHHHHH----ccchHHHH-------HHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH----------
Confidence 45667899999999 99999999 555555553 245688999999999999996
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 278 RTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+.|+..+++++.++|++..+..|++.+-.
T Consensus 63 ~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 99999999999999999999999984433
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.63 E-value=4.5e-07 Score=67.74 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-------PTLHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
.+.-.+.+|..++..++ |..|+.+|++|++.. +....++..||.++.. +|+++.|
T Consensus 4 sa~dc~~lG~~~~~~~~--------------y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A 65 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEAD--------------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKA 65 (104)
T ss_dssp CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHHHccc--------------hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHH
Confidence 35567899999999999 999999999999873 3468899999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
+ ..++++++++|++..+..|++.
T Consensus 66 ~-------~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 66 L-------LLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp H-------HHHHHHHHHCTTCHHHHHHHHH
T ss_pred H-------HHHHHHHhcCCCCHHHHhhHHH
Confidence 9 7899999999999999998883
No 219
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.14 E-value=0.00021 Score=68.55 Aligned_cols=145 Identities=8% Similarity=-0.042 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS-- 217 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-- 217 (365)
.......|++++...|..+..|...+..+...|+ .+.|...|++|+.. |.+...|...+....
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~--------------~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~ 259 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ--------------KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE 259 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh
Confidence 3456789999999999999999999999999999 99999999999999 998777765544310
Q ss_pred ----H---H---------------------------HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 218 ----D---R---------------------------AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 218 ----~---~---------------------------~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
. + ..+.+.. +.|...|.++ ...+....+|...+.+-..
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~-------~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL-------ELFRKLFIEL-GNEGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHH-TTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH-------HHHHHHHHHh-hCCCCChHHHHHHHHHHHH
Confidence 0 0 0002222 3355778888 4333456777777777776
Q ss_pred hc-CcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 264 LS-AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 264 ~~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
.+ +. +.|...|+.+++..|+.+..|...+......|+...+...
T Consensus 332 ~~~d~----------~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 332 ATGSR----------ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHCCS----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HCCCh----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66 45 9999999999999999988877777777777766654433
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.11 E-value=4.6e-05 Score=58.16 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-TLHDAFYNWAIA 215 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~ 215 (365)
..+..+.+.|.+.+..++....+.+++|+++.+... .....++|..++..+..+ | ..-++++.||..
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~-----------~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 557778888999999889999999999999998765 222556999999999887 5 577899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
+++ +|+|..|. ++++..|+.+|++..+......+--+
T Consensus 84 ~yk----lg~Y~~A~-------~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 84 NYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH----hhhHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999 99999999 88999999999999887766555433
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.10 E-value=4.8e-05 Score=58.06 Aligned_cols=103 Identities=10% Similarity=0.015 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHh
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-W-NSPQALNNWGLALQEL 264 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~ 264 (365)
....+...|.+.+..++.+.++.+++|.++.. ..+...-. ++|..++..+..+ | ...+.++.+|..++++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~----S~~~~d~~----~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----TRYNDDIR----KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----SSSHHHHH----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc----CCCHHHHH----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 37788888999988888999999999999988 77666611 2337788888776 5 5778999999999999
Q ss_pred cCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
|++ .+|.++++..|+..|+|..+......+-.+
T Consensus 88 g~Y----------~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 88 KEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp TCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 995 999999999999999999887666555443
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.71 E-value=0.00057 Score=53.40 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=93.7
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHhc
Q 017806 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--------LHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 152 ~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~ 223 (365)
-+.|++++.|..........|+ +...+-.++-++.|++|+..-|- ....|...+.. .. .
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~--------p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e----i 73 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSV--------PLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA----I 73 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTC--------SCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH----H
T ss_pred eeCCCCHHHHHHHHHHHHHcCC--------CchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH----h
Confidence 3679999999999999998888 00002238889999999987664 23455555543 34 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
++.++|. ..|+.++.+..+++.+|...|..-.++|+. ..|.+.+.+|+.+.|...+. ...+.
T Consensus 74 ~D~d~aR-------~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl----------~kARkILg~AiG~~~k~~~~-le~a~ 135 (161)
T 4h7y_A 74 QEPDDAR-------DYFQMARANCKKFAFVHISFAQFELSQGNV----------KKSKQLLQKAVERGAVPLEM-LEIAL 135 (161)
T ss_dssp HCGGGCH-------HHHHHHHHHCTTBHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCBCHHH-HHHHH
T ss_pred cCHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHhccCCCcHHH-HHHHH
Confidence 7888888 667777666778899999999999999997 99999999999999986554 33444
Q ss_pred HHHHhh
Q 017806 304 VLYGLA 309 (365)
Q Consensus 304 ~~~~~g 309 (365)
.-++.|
T Consensus 136 ~nl~~~ 141 (161)
T 4h7y_A 136 RNLNLQ 141 (161)
T ss_dssp HHHHTT
T ss_pred HhhhcC
Confidence 444555
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.61 E-value=0.0015 Score=62.58 Aligned_cols=177 Identities=11% Similarity=-0.039 Sum_probs=116.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhh---hhhHHHHHHHHHHHHHh-------------CC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSR---QRILTFAAKRYANAIER-------------NP 155 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~A~~~~~~al~~-------------~p 155 (365)
+...|..+..|+..+..+ ...|+.+.|...|++|+.. |....- -..+.+-.+.++++... .+
T Consensus 206 l~~~p~~~~lW~~ya~~~-~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 206 LDSFYYAEEVYFFYSEYL-IGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHTTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHH
T ss_pred HHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhccc
Confidence 445577777888777777 4778888888888888888 763110 01110000112222111 01
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWK 234 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g-~~~~A~~~~~ 234 (365)
....+|...+......+. .+.|...|++| ...+.....|...+.+... .+ +.+.|.
T Consensus 284 ~~~~lw~~y~~~~~r~~~--------------~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~----~~~d~~~ar---- 340 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRG--------------LELFRKLFIEL-GNEGVGPHVFIYCAFIEYY----ATGSRATPY---- 340 (493)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------HHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH----HHCCSHHHH----
T ss_pred ccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHh-hCCCCChHHHHHHHHHHHH----HCCChHHHH----
Confidence 123456666666666677 99999999999 4333466777777777766 55 588888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
..|+.+++..|+.+..|..++......|+. +.|...|+++ +.....|......-...|+
T Consensus 341 ---~ife~al~~~~~~~~~~~~yid~e~~~~~~----------~~aR~l~er~----~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 341 ---NIFSSGLLKHPDSTLLKEEFFLFLLRIGDE----------ENARALFKRL----EKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp ---HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred ---HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence 678888888899999998888888888886 8999999987 3455666665555555554
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.55 E-value=0.00036 Score=55.65 Aligned_cols=117 Identities=7% Similarity=-0.069 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---------HDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
+++.-...+...+. |+.|+-....++.+..++ ..++..+|.+++. .|+|..|.
T Consensus 22 ~l~dqik~L~d~~L--------------Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~ 83 (167)
T 3ffl_A 22 NVIDHVRDMAAAGL--------------HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAV 83 (167)
T ss_dssp CHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHhhh--------------HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHH
Confidence 34444555566666 999999999988774333 3478999999999 99999999
Q ss_pred HHHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 231 ELWKQATKNYEKAVQLN------------------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
..|++|++..+...+.. +.+.++.+.++.||.+++++ .+|+..++..- ..-
T Consensus 84 ~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~----------~~Ai~~Le~Ip-~k~ 152 (167)
T 3ffl_A 84 SKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD----------KDAIAILDGIP-SRQ 152 (167)
T ss_dssp HHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH----------HHHHHHHHTSC-GGG
T ss_pred HHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH----------HHHHHHHhcCC-chh
Confidence 99999888666432221 22347889999999999996 99999876532 233
Q ss_pred CCHHHHHHHHHHH
Q 017806 293 DFHRAIYNLGTVL 305 (365)
Q Consensus 293 ~~~~~~~~lg~~~ 305 (365)
..+.+...||..|
T Consensus 153 Rt~kvnm~LakLy 165 (167)
T 3ffl_A 153 RTPKINMLLANLY 165 (167)
T ss_dssp CCHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHh
Confidence 4577777777654
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.49 E-value=0.003 Score=48.33 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAI 216 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 216 (365)
.++....+-|.+-+ .+.-.+.+.+++|+++.+... .....++|..++..+..+|. .-++++.||..+
T Consensus 21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~-----------~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ 88 (134)
T 3o48_A 21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGC 88 (134)
T ss_dssp HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSC-----------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 34555555565543 333467889999999998765 23377899999999999984 588999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
++ +|+|..|. ++.+..++..|++..+......+-.+.
T Consensus 89 yk----lgdY~~Ar-------~y~d~lL~~eP~N~QA~~Lk~~Ie~ki 125 (134)
T 3o48_A 89 YK----LGEYSMAK-------RYVDTLFEHERNNKQVGALKSMVEDKI 125 (134)
T ss_dssp HH----HTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HH----hhhHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 99 99999999 889999999999998877666655444
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.43 E-value=0.0039 Score=47.67 Aligned_cols=108 Identities=8% Similarity=-0.048 Sum_probs=81.1
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Q 017806 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLAL 261 (365)
Q Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 261 (365)
.....+.....-|.+=+ ...-.+.+.++++.++.+ ..+...- .++|..++..++.+| ...+.++.+|..+
T Consensus 18 ~~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~----S~~~~d~----~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ 88 (134)
T 3o48_A 18 LYPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIK----STDVNDE----RLGVKILTDIYKEAESRRRECLYYLTIGC 88 (134)
T ss_dssp CCHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHH----SSCHHHH----HHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHc----CCCHHHH----HHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 33444556666665533 233368999999999988 7655332 244478888888888 4589999999999
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
.++|++ ++|.++.+..|+..|+|..+......+-.+..
T Consensus 89 yklgdY----------~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 89 YKLGEY----------SMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ 126 (134)
T ss_dssp HHHTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHhhhH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 999995 99999999999999999988776666655444
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.35 E-value=0.006 Score=47.25 Aligned_cols=106 Identities=8% Similarity=-0.038 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q 017806 184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQ 262 (365)
Q Consensus 184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 262 (365)
....+.....-|.+-+. +.-..++.++++.++.. ..+...-. ++|..++..+..+| ...+.++.+|..+.
T Consensus 18 ~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~----S~~~~di~----~GI~LLe~l~~~~~~~~RdcLYyLAvg~y 88 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIK----STDVNDER----LGVKILTDIYKEAESRRRECLYYLTIGCY 88 (144)
T ss_dssp CHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHH----SSSHHHHH----HHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHc----CCCHHHHH----HHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 33445555555554322 35578999999999998 76654322 44478888888888 46789999999999
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
++|++ .+|.++.+..|+..|+|..+......+-.+.
T Consensus 89 kl~~Y----------~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 89 KLGEY----------SMAKRYVDTLFEHERNNKQVGALKSMVEDKI 124 (144)
T ss_dssp TTTCH----------HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99995 9999999999999999998876666555444
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.34 E-value=0.023 Score=54.49 Aligned_cols=156 Identities=10% Similarity=-0.010 Sum_probs=119.9
Q ss_pred HhhhcHHHHHHHHHHhhccC--hh--h-------h---------hhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 017806 111 QLAEQNNAAMELINSVTGVD--EE--G-------R---------SRQRILTFAAKRYANAIERNP-EDYDALYNWALVLQ 169 (365)
Q Consensus 111 ~~~g~~~~A~~~~~~al~~~--~~--~-------~---------~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 169 (365)
...|+.++|+.+|.+..... |+ . + ...+.++.|.+.|.+.....- -+...|..+-..|.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 38899999999998876542 22 1 1 123568999999999887642 36778999999999
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-- 246 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-- 246 (365)
..|+ +++|...|++..+.. .-+...|+.+-..|.+ .|+.++|. +.|+...+.
T Consensus 117 ~~g~--------------~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~-------~l~~~M~~~G~ 171 (501)
T 4g26_A 117 AKDD--------------PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAY-------EVDAHMVESEV 171 (501)
T ss_dssp HHTC--------------HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHTTC
T ss_pred hcCC--------------HHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHH-------HHHHHHHhcCC
Confidence 9999 999999999988763 2267788999999999 99999999 556665544
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGT 303 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 303 (365)
.| +..+|+.+-.++.+.|+. ++|.+.|++.-+. .|+ ...+..+-.
T Consensus 172 ~P-d~~ty~~Li~~~~~~g~~----------d~A~~ll~~Mr~~g~~ps-~~T~~~l~~ 218 (501)
T 4g26_A 172 VP-EEPELAALLKVSMDTKNA----------DKVYKTLQRLRDLVRQVS-KSTFDMIEE 218 (501)
T ss_dssp CC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhhCCCH----------HHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence 34 578899999999999996 9999999997764 454 344444433
No 229
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.34 E-value=0.021 Score=54.69 Aligned_cols=157 Identities=10% Similarity=-0.085 Sum_probs=119.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC-CCHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFY 210 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 210 (365)
.+.+.|++++|++.|++..+.+- -+...|..+-.++...+. .......+.++.|...|++.....- -+...|+
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~-----~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA-----ATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC-----CSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc-----hhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34567999999999999988642 246666666656554433 1222345668999999999877642 2677899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
.+-..+.+ .|++++|. ..|+...+. .| +..+|+.+-..|.+.|+. ++|.+.|++..
T Consensus 110 ~lI~~~~~----~g~~~~A~-------~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~----------~~A~~l~~~M~ 167 (501)
T 4g26_A 110 NGARLAVA----KDDPEMAF-------DMVKQMKAFGIQP-RLRSYGPALFGFCRKGDA----------DKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHH----HTCHHHHH-------HHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHH
T ss_pred HHHHHHHh----cCCHHHHH-------HHHHHHHHcCCCC-ccceehHHHHHHHHCCCH----------HHHHHHHHHHH
Confidence 99999999 99999999 556665544 34 578899999999999996 99999999988
Q ss_pred HhC--CCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 289 QLQ--FDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 289 ~~~--p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+.. | +...|..|-.++.+.|+.+++...
T Consensus 168 ~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 168 ESEVVP-EEPELAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HTTCCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCC-CHHHHHHHHHHHhhCCCHHHHHHH
Confidence 763 4 577889999999999987766544
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.32 E-value=0.0055 Score=47.44 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAIS 217 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 217 (365)
++....+-|.+-+. +.-...+.+++|+++..... .....++|..++..+...|. .-++++.||..++
T Consensus 21 eL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~-----------~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y 88 (144)
T 1y8m_A 21 QLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCY 88 (144)
T ss_dssp HHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSS-----------HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 34455555544322 34578899999999998765 23377899999999998884 6789999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
+ +|+|.+|. ++.+..|+.+|++..+......+-.
T Consensus 89 k----l~~Y~~Ar-------~y~d~lL~~eP~n~QA~~Lk~~Ie~ 122 (144)
T 1y8m_A 89 K----LGEYSMAK-------RYVDTLFEHERNNKQVGALKSMVED 122 (144)
T ss_dssp T----TTCHHHHH-------HHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred H----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9 99999999 8899999999999888766555443
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.13 E-value=0.0024 Score=50.86 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=74.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC---
Q 017806 135 SRQRILTFAAKRYANAIERNPED---------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--- 202 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--- 202 (365)
+..+.|+.|+-....++.+..++ ..++..+|.+++..++ |..|...|+++|...
T Consensus 31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e--------------yrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE--------------YRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH--------------HHHHHHHHHHHHHHHHHH
Confidence 34467888888888876654322 3478999999999999 999999999997651
Q ss_pred ---C-------------------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 203 ---P-------------------TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 203 ---p-------------------~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
+ .+.++.+.++.|+.. ++++.+|+ ..++. |-..-..+.+-..||.+
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~----l~~~~~Ai-------~~Le~-Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTV----LKQDKDAI-------AILDG-IPSRQRTPKINMLLANL 164 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHH----TTCHHHHH-------HHHHT-SCGGGCCHHHHHHHHHH
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHH----HCCHHHHH-------HHHhc-CCchhcCHHHHHHHHHH
Confidence 1 113788999999999 99999999 43433 22233467777777776
Q ss_pred H
Q 017806 261 L 261 (365)
Q Consensus 261 ~ 261 (365)
|
T Consensus 165 y 165 (167)
T 3ffl_A 165 Y 165 (167)
T ss_dssp C
T ss_pred h
Confidence 5
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.75 E-value=0.0052 Score=48.04 Aligned_cols=100 Identities=6% Similarity=-0.134 Sum_probs=79.5
Q ss_pred cCCCchHHHHhcCCChhHhhhcH------HHHHHHHHHhhccChhh-----------------hhhhhhHHHHHHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQN------NAAMELINSVTGVDEEG-----------------RSRQRILTFAAKRYANA 150 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~------~~A~~~~~~al~~~~~~-----------------~~~~~~~~~A~~~~~~a 150 (365)
..|.+++.|...-..+ +..|+. +.-++.|++|+..-|.. +...+|.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~ll-E~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKL-EKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHH-HHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH-HHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4577777777666666 566776 88889999998877651 22338899999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 151 IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA 208 (365)
Q Consensus 151 l~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 208 (365)
+.+....+.+|...|..-.++|+ ...|...+.+|+.+.|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgn--------------l~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGN--------------VKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHccc--------------HHHHHHHHHHHhccCCCcHHH
Confidence 99988888888888888888888 999999999999999986553
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.33 E-value=0.18 Score=46.48 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.+...++..+...|+ +.+++..+++++..+|-+..+|..|-.++.. .|+..+|+..|+....
T Consensus 172 ~a~~~~~~~~l~~g~--------------~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~----~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGR--------------ASAVIAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 345667777888888 9999999999999999999999999999999 9999999999999888
Q ss_pred HHHHHHhcCCC
Q 017806 239 NYEKAVQLNWN 249 (365)
Q Consensus 239 ~~~~al~~~p~ 249 (365)
.+..-+.++|.
T Consensus 234 ~L~~eLG~~P~ 244 (388)
T 2ff4_A 234 TLADDLGIDPG 244 (388)
T ss_dssp HHHHHHSCCCC
T ss_pred HHHHHhCCCCC
Confidence 88888888886
No 234
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.28 E-value=0.029 Score=53.39 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.+..||.+...... +..|..+|.+|+.+.|++...++.||.+... .|+.-+|+ -+
T Consensus 154 ~l~~LGDL~RY~~~--------------~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~-------y~ 208 (497)
T 1ya0_A 154 CLVHLGDIARYRNQ--------------TSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTI-------FY 208 (497)
T ss_dssp HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHHcccHHHHHHH--------------HHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHH-------HH
Confidence 45566666666666 8999999999999999999999999999999 99999999 66
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
|.+++....-++.+..|+...+.+.
T Consensus 209 y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 209 YCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhHHHHHHHHHHHH
Confidence 7777766666777777777776653
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.13 Score=51.32 Aligned_cols=117 Identities=13% Similarity=0.025 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCH----------HHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSP----------QALNN 256 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~----------~~~~~ 256 (365)
++.|+..+++....+|.....+......... +...+--+|+....++++.+...+..- +.+. ..+..
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~--~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILD--HIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 6889999999999999765433222111111 002234567777777776665544432 3332 23334
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
-+..+...|+ |+-|+.+-++|+.+.|.....|+.|+.||..+|+.+.|+.
T Consensus 343 Qa~FLl~K~~----------~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 343 QTNFLLNRGD----------YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHTTC----------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccCc----------HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 4555566666 5999999999999999999999999999999999888753
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.45 E-value=0.097 Score=49.81 Aligned_cols=81 Identities=23% Similarity=0.218 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++..||.+... ...+..|. .+|.+|+.+.|++...++.||.+....|+. -+|+-+|.+
T Consensus 153 r~l~~LGDL~RY----~~~~~~A~-------~~Y~~A~~~~P~~G~~~nqLavla~~~~~~----------l~a~y~y~r 211 (497)
T 1ya0_A 153 HCLVHLGDIARY----RNQTSQAE-------SYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHHcccHHHH----HHHHHHHH-------HHHHHHHHhCCCCCchHHHHHHHHhccccc----------HHHHHHHHH
Confidence 467778888888 77777777 889999999999999999999999999996 889999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHh
Q 017806 287 AIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 287 al~~~p~~~~~~~~lg~~~~~~ 308 (365)
++......+.+..||...+...
T Consensus 212 sl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 212 SIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCChhHHHHHHHHHHHH
Confidence 9998877899999999888764
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.18 Score=50.43 Aligned_cols=113 Identities=13% Similarity=0.071 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCccccCCCCchhhhHHHHHHHHHHHHHH--------hCCCCH---
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQE--SADNVSLDSTSPSKDALLEEACKKYDEATR--------LCPTLH--- 206 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~a~~~~~~~~~~~~~A~~~~~~al~--------~~p~~~--- 206 (365)
++.|+..+++..+.+|.... ++..+.+... .++ .--+|+....++++ +.+.+.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~-------------~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIET-------------KELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGG-------------GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 68899999999999997643 3333332221 111 13456666666653 122322
Q ss_pred -------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHH
Q 017806 207 -------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT 279 (365)
Q Consensus 207 -------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 279 (365)
..+..-+..+.. .|+++-|+ +.-++|+.+-|.....|+.|+.+|..+|++ +.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~----K~~~elAL-------~~Ak~AV~~aPseF~tW~~La~vYi~l~d~----------e~ 389 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLN----RGDYELAL-------GVSNTSTELALDSFESWYNLARCHIKKEEY----------EK 389 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHTTCH----------HH
T ss_pred cccCcchHHHHHHHHHHhc----cCcHHHHH-------HHHHHHHhcCchhhHHHHHHHHHHHHhccH----------HH
Confidence 234444566666 89999998 889999999999999999999999999996 88
Q ss_pred HHHHHHHH
Q 017806 280 AISKFRAA 287 (365)
Q Consensus 280 A~~~~~~a 287 (365)
|+-.+..+
T Consensus 390 ALLtLNSc 397 (754)
T 4gns_B 390 ALFAINSM 397 (754)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 87655443
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.25 E-value=0.13 Score=51.62 Aligned_cols=89 Identities=16% Similarity=0.044 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELS 265 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~ 265 (365)
+++|.+..+. -++...|..+|..+.. .|+++.|+.+|.++ ..|..+..+ ..++.+.+..++......|
T Consensus 668 ~~~A~~~~~~-----~~~~~~W~~la~~al~----~~~~~~A~~~y~~~-~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 668 LTLARDLLTD-----ESAEMKWRALGDASLQ----RFNFKLAIEAFTNA-HDLESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHHTT-----CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH-TCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-----hCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc-cChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888776542 3567888888888888 88888888776654 222222211 2445666666676666666
Q ss_pred CcchhHH---hhhHHHHHHHHHHH
Q 017806 266 AIVPARE---KQTIVRTAISKFRA 286 (365)
Q Consensus 266 ~~~~~~~---~~~~~~~A~~~~~~ 286 (365)
++..|.. ..|++++|++.|.+
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCHHHHHHHHHH
Confidence 6643332 34555666666554
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.24 E-value=0.71 Score=39.77 Aligned_cols=119 Identities=12% Similarity=-0.021 Sum_probs=83.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
.++.|++++|+......++.+|.+......+-.++.-.|+ |+.|..-++.+.+++|.....-..+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~--------------w~RA~~QL~~~a~l~p~~~~~a~~yr 72 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 4566889999999999999999999999999999999999 99999999999999998654322211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc---C---CCCHH---HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQL---N---WNSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~---~---p~~~~---~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
. +|.. +.++..+=. . +..+. ....-+......|+. ++|...-
T Consensus 73 ~--------------lI~a-----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~----------~~A~~lr 123 (273)
T 1zbp_A 73 H--------------LVKA-----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY----------EQVSELA 123 (273)
T ss_dssp H--------------HHHH-----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH----------HHHHHHH
T ss_pred H--------------HHHH-----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCH----------HHHHHHH
Confidence 1 1111 223332211 1 12222 333344555556775 9999999
Q ss_pred HHHHHhCCCCH
Q 017806 285 RAAIQLQFDFH 295 (365)
Q Consensus 285 ~~al~~~p~~~ 295 (365)
.+|++..|..+
T Consensus 124 ~~A~e~ap~~~ 134 (273)
T 1zbp_A 124 LQIEELRQEKG 134 (273)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHhcCcccC
Confidence 99999877543
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.86 E-value=0.67 Score=36.94 Aligned_cols=169 Identities=11% Similarity=-0.030 Sum_probs=103.4
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC-----hhhhhhhhhHHHHHHHHHHHHH-----------------hC
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIE-----------------RN 154 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~A~~~~~~al~-----------------~~ 154 (365)
..++--..++.+++ ..|.+..++-++.+.-... ..|+...++|.+|+.+++..++ .+
T Consensus 31 ~~~eY~lL~~I~Ly-yngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 31 CKPEYRMLMSIVLY-LNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp ---CTHHHHHHHHH-HTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred CChHHHhhhhhhhh-hcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 33445555666674 7888888877665432222 2267777999999999999984 23
Q ss_pred CCCHHH-HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHHHHHHh
Q 017806 155 PEDYDA-LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI-----------AISDRAKM 222 (365)
Q Consensus 155 p~~~~~-~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-----------~~~~~~~~ 222 (365)
|.+.+. +..+|.++...|+ .++||.+|.....+.|-.+.+-+.+-. +... .
T Consensus 110 ~~DkEfFy~l~a~lltq~g~--------------r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~---~ 172 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGY--------------REEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQT---G 172 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------
T ss_pred cchHHHHHHHHHHHHHHhcC--------------HHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhh---h
Confidence 555554 4567999999999 999999999999988765443322100 0000 0
Q ss_pred cCC-----HHHHHHHHHHHH--HHHHHHHhcCCCCHHH-HHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 223 RGR-----TKEAEELWKQAT--KNYEKAVQLNWNSPQA-LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 223 ~g~-----~~~A~~~~~~A~--~~~~~al~~~p~~~~~-~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
... +....+ ++..+ ...++-...-|..... ..+.+..|..+|-. ++...+|...-..+|..
T Consensus 173 ~~~i~~~y~~d~~~-lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~----------d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 173 RRGIEEEYVSDSIE-FHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMN----------DKSKACFELVRRKDPMF 241 (242)
T ss_dssp --CHHHHHHHHHHH-HHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTT
T ss_pred hccchhhhhhhHHH-HHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccc----------hhHHHHHHHHHhcCCCc
Confidence 000 011111 11100 1222333344664433 34677889999997 99999999999999863
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.39 E-value=0.49 Score=43.50 Aligned_cols=161 Identities=12% Similarity=0.012 Sum_probs=106.4
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---h-----------hhh--hhhHHHHHHHHHHHHHhCCCCHHHH--
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---G-----------RSR--QRILTFAAKRYANAIERNPEDYDAL-- 161 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---~-----------~~~--~~~~~~A~~~~~~al~~~p~~~~~~-- 161 (365)
.+.+.+|.+| ...|+.++-.+++......-+. + .+. .+..+.-++.+..+++..-+.-..|
T Consensus 20 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELY-KQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHH-HHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888 4888888888888776655433 0 000 1334445556666665432222222
Q ss_pred ----HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 162 ----YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 162 ----~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..+|.+|...|+ |.+|...+.+.+.-... ..+++..-..+|.. .+++..+..
T Consensus 99 ~~l~~kL~~l~~~~~~--------------y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~ 160 (394)
T 3txn_A 99 QSLEARLIALYFDTAL--------------YTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARA 160 (394)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHH
Confidence 378999999999 99999999998874221 24566777777888 999999998
Q ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 232 LWKQATKNYEKAVQLNWN-SPQALNNWGLALQ-ELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+.+|..... ++-.+|. .+.....-|..+. ..+++ .+|..+|-+++.-
T Consensus 161 ~l~~a~~~~~-ai~~~p~i~a~i~~~~Gi~~l~~~rdy----------k~A~~~F~eaf~~ 210 (394)
T 3txn_A 161 ALTSARTTAN-AIYCPPKVQGALDLQSGILHAADERDF----------KTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTTSCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHhhhc-cCCCCHHHHHHHHHHhhHHHHHhccCH----------HHHHHHHHHHHhc
Confidence 7777755433 3323332 2345555677777 67775 9999999999854
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.32 E-value=1.7 Score=34.98 Aligned_cols=97 Identities=12% Similarity=-0.041 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
.|+++.|.+..+.. ++...|..||......|+ ++-|+.+|+++- + +..+..+|
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn--------------~~lAe~cy~~~~-----D---~~~L~~Ly 70 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGN--------------ASLAEMIYQTQH-----S---FDKLSFLY 70 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHTT-----C---HHHHHHHH
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHhC-----C---HHHHHHHH
Confidence 37788887776554 678889999999999999 999999999872 2 33444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.. .|+.+.-. +.-+.+... .+ ++....+++.+|++ +++++.|.+
T Consensus 71 ~~----tg~~e~L~-------kla~iA~~~-g~----~n~af~~~l~lGdv----------~~~i~lL~~ 114 (177)
T 3mkq_B 71 LV----TGDVNKLS-------KMQNIAQTR-ED----FGSMLLNTFYNNST----------KERSSIFAE 114 (177)
T ss_dssp HH----HTCHHHHH-------HHHHHHHHT-TC----HHHHHHHHHHHTCH----------HHHHHHHHH
T ss_pred HH----hCCHHHHH-------HHHHHHHHC-cc----HHHHHHHHHHcCCH----------HHHHHHHHH
Confidence 55 67665544 222222221 11 22334567777885 777777654
No 243
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=93.68 E-value=0.22 Score=34.69 Aligned_cols=45 Identities=27% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
..+.|+....+|++. -. .|++.+|+.+|..|++.|..+++..|+.
T Consensus 15 ~~~~Ai~lv~~Ave~---------------D~----~g~y~eAl~lY~~aie~l~~alk~e~d~ 59 (83)
T 2w2u_A 15 LEEMARKYAINAVKA---------------DK----EGNAEEAITNYKKAIEVLAQLVSLYRDG 59 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHH---------------HH----hccHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 367778777777654 34 9999999999999999999999887654
No 244
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=93.17 E-value=0.29 Score=34.15 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
.+.|+....+|++. -. .|++.+|+.+|..|++.|..+++..|+..
T Consensus 8 ~~~Ai~lv~~Ave~---------------D~----~g~y~eAl~lY~~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 8 EDMARKYAILAVKA---------------DK----EGKVEDAITYYKKAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHH---------------HH----hccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 66788888887654 34 99999999999999999999998876543
No 245
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=93.05 E-value=0.52 Score=33.59 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
....+.|+..+.+|++.+ . .|+|++|+.+|..|+..|..+++..++..
T Consensus 9 ~~~l~~Ai~lv~~Ave~D---------------~----~g~y~eAl~~Y~~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELD---------------A----ESRYQQALVCYQEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp CCHHHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred hHHHHHHHHHHHHHHHHH---------------H----hCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 345778888888886643 4 89999999999999999999999887644
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.76 E-value=0.7 Score=46.29 Aligned_cols=124 Identities=11% Similarity=-0.041 Sum_probs=73.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH--------hCCCCHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--------LCPTLHD 207 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~--------~~p~~~~ 207 (365)
..|+++.|.+..+ ..++...|..+|..+...++ ++.|+.+|.++-. ....+.+
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~--------------~~~A~~~y~~~~d~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN--------------FKLAIEAFTNAHDLESLFLLHSSFNNKE 724 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC--------------HHHHHHHHHHccChhhhHHHHHHcCCHH
Confidence 3477777776643 34678999999999999999 9999999998722 1233444
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
.+..++..... .|++..|. ..|.+. ++.+ ..-.+|.+.++ +++|+..-++
T Consensus 725 ~~~~~~~~a~~----~~~~~~A~-------~~~~~~-----g~~~---~a~~~~~~~~~----------~~~A~~lA~~- 774 (814)
T 3mkq_A 725 GLVTLAKDAET----TGKFNLAF-------NAYWIA-----GDIQ---GAKDLLIKSQR----------FSEAAFLGST- 774 (814)
T ss_dssp HHHHHHHHHHH----TTCHHHHH-------HHHHHH-----TCHH---HHHHHHHHTTC----------HHHHHHHHHH-
T ss_pred HHHHHHHHHHH----cCchHHHH-------HHHHHc-----CCHH---HHHHHHHHcCC----------hHHHHHHHHH-
Confidence 44455555555 55555555 222221 1111 11234555555 5888876554
Q ss_pred HHhCCCC---HHHHHHHHHHHHHhhh
Q 017806 288 IQLQFDF---HRAIYNLGTVLYGLAE 310 (365)
Q Consensus 288 l~~~p~~---~~~~~~lg~~~~~~g~ 310 (365)
..|.. ..+....+.-+...|+
T Consensus 775 --~~~~~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 775 --YGLGDNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred --hCCChHHHHHHHHHHHHHHHhccc
Confidence 45544 2444455555555554
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.30 E-value=2.3 Score=38.98 Aligned_cols=81 Identities=16% Similarity=-0.013 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 188 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
.+.|...+++|+.+.... ..+...++..+.. .|++.+++ ..+..++.
T Consensus 131 ~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~----~g~~~~a~-------~~l~~~~~ 199 (388)
T 2ff4_A 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA----CGRASAVI-------AELEALTF 199 (388)
T ss_dssp HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHH
Confidence 777777777777763210 1223345555556 88888888 77999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 246 ~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
.+|-+-.+|..+-.+|...|+. .+|++.|++.-.
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~----------~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQ----------SDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 9999999999999999999997 888888877654
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.79 E-value=3.2 Score=33.14 Aligned_cols=117 Identities=14% Similarity=0.029 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
.+|+.++=.-.- +-|..++....++.+++-.|+ |..|+-++.+ -+..-+.+.-..++.
T Consensus 16 ~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngE--------------Y~R~Lf~L~~-----lNT~Ts~YYk~LCy~ 73 (242)
T 3kae_A 16 RDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGE--------------YTRALFHLHK-----LNTCTSKYYESLCYK 73 (242)
T ss_dssp TCHHHHHHHHHH---HC----CTHHHHHHHHHHTTC--------------HHHHHHHHHT-----CCBHHHHHHHHHHHH
T ss_pred ccccHHHHHHHH---HccCChHHHhhhhhhhhhcch--------------HhHHHHHHHh-----cchHHHHHHHHHHHH
Confidence 456655432222 334445566788999999999 8888776643 245666777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHh-----------------cCCCCHH-HHHHHHHHHHHhcCcchhHHhhhHHHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQ-----------------LNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVRT 279 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~-----------------~~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~ 279 (365)
. ..+|..|+ ..++..++ .||.+-+ .+..+|.++...|+. ++
T Consensus 74 k----lKdYkkA~-------~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r----------~E 132 (242)
T 3kae_A 74 K----KKDYKKAI-------KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYR----------EE 132 (242)
T ss_dssp H----TTCHHHHH-------HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCH----------HH
T ss_pred H----HHHHHHHH-------HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCH----------HH
Confidence 8 99999999 66777762 2344544 455689999999997 99
Q ss_pred HHHHHHHHHHhCCCCHHH
Q 017806 280 AISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 280 A~~~~~~al~~~p~~~~~ 297 (365)
|+.+|.......|-.+.+
T Consensus 133 aI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 133 GIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred hhhHhhhhcCCccccchH
Confidence 999999999998865443
No 249
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=91.21 E-value=2.3 Score=29.66 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
.|++++|+.+|..|+..|..+++..|+.
T Consensus 29 ~g~y~eAl~lY~~Aie~ll~alk~e~d~ 56 (86)
T 4a5x_A 29 ESRYPQALVCYQEGIDLLLQVLKGTKDN 56 (86)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 9999999999999999999999987764
No 250
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=90.45 E-value=1.4 Score=30.64 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
..+.|+..+.+|++. .. .|++++|+.+|..|+..|..+++..++.
T Consensus 9 ~l~~A~~l~~~Av~~---------------D~----~g~y~eAl~~Y~~aie~l~~a~k~e~~~ 53 (85)
T 2v6x_A 9 FLTKGIELVQKAIDL---------------DT----ATQYEEAYTAYYNGLDYLMLALKYEKNP 53 (85)
T ss_dssp HHHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 367777777777643 34 8999999999999999999999887653
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.94 E-value=0.4 Score=45.46 Aligned_cols=137 Identities=9% Similarity=-0.094 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHH----------HHH
Q 017806 137 QRILTFAAKRYANAI-----------ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC----------KKY 195 (365)
Q Consensus 137 ~~~~~~A~~~~~~al-----------~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~----------~~~ 195 (365)
.+++++|.++-...+ .+|+-.+.+|+..+.++...|+ ..... ..+
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~--------------~~~~~~~~~~~~~ir~~L 214 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLAR--------------SSEEINSDNQNIILRSTM 214 (523)
T ss_dssp --------------------------------------------------------------------CHHHHHHHHTHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcc--------------cccccccccchhhHHHHH
Confidence 355666666555443 1245567788888888888877 44321 122
Q ss_pred HHHHHh-----CCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHH
Q 017806 196 DEATRL-----CPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-------PQALNNWGLALQ 262 (365)
Q Consensus 196 ~~al~~-----~p~-~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~ 262 (365)
-.++.. |+. .+..++.+-..|.. .+.++.|. +...++. .|.. ...++.+|.++.
T Consensus 215 l~~~rta~lr~D~~~qa~l~nllLRnYL~----~~~y~qA~-------~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 215 MKFLKIASLKHDNETKAMLINLILRDFLN----NGEVDSAS-------DFISKLE--YPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp HHHHHHCCSCSSSCHHHHHHHHHHHHHHH----SSCSTTHH-------HHHHHHC--SCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHc----cCcHHHHH-------HHHhcCc--CCcccCCHHHHHHHHHHHHHHHH
Confidence 222222 222 35678888888888 99999999 6666663 3432 567788899999
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhhh
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-------RAIYNLGTVLYGLAE 310 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~ 310 (365)
-++++ .+|.+++..|+...|.+. .++..+-.|-.-+|+
T Consensus 282 ~q~~Y----------~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~ 326 (523)
T 4b4t_S 282 IQLDY----------STANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGD 326 (523)
T ss_dssp HTTCH----------HHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTC
T ss_pred HhccH----------HHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCC
Confidence 99995 999999999999877542 233334444445664
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.81 E-value=1.6 Score=37.55 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
|.++++++.....++.+|.|+.....|-.++.- .|+|+.|. +.++.+.+++|.....
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv----~G~w~RA~-------~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERAD-------EQLMQSIKLFPEYLPG 67 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCGGGHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHhCchhhHH
Confidence 449999999999999999999999999999999 99999999 7799999999986543
No 253
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=89.72 E-value=2.5 Score=31.48 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
.++.|+..+.+|++. -. .|+|++|+.+|..|+..|..+++..+.+..
T Consensus 14 ~l~kAi~lv~~Ave~---------------D~----ag~y~eAl~lY~~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 14 NLQKAIDLASKAAQE---------------DK----AGNYEEALQLYQHAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHHHHH---------------HH----HTCHHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHH---------------HH----ccCHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 477888888888643 34 899999999999999999999998755554
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.40 E-value=1.5 Score=40.81 Aligned_cols=104 Identities=12% Similarity=-0.008 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.....++..+|..|...|+ ++.|.++|.++...... -.+.+...-.++.. .++|..+..
T Consensus 128 ~e~~~~~~~la~~~~~~Gd--------------~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~ 189 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGD--------------KDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKE 189 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCC--------------CTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHH
Confidence 3455678999999999999 99999999999876433 46778888888888 999999996
Q ss_pred HHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 232 LWKQATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
.+++|...+. ...++. .....|..+...++ |.+|...|-.++...
T Consensus 190 ~~~ka~~~~~-----~~~d~~~~~~lk~~~gl~~l~~r~----------f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 190 KLEAVNSMIE-----KGGDWERRNRYKTYYGIHCLAVRN----------FKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHT-----TCCCTHHHHHHHHHHHHGGGGTSC----------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhh-----cCCCHHHHHHHHHHHHHHHHHhCh----------HHHHHHHHHHHhccC
Confidence 6555433221 122333 33344555666666 599999999888654
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.38 E-value=17 Score=37.59 Aligned_cols=99 Identities=9% Similarity=-0.138 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
...+..+-..|.+.|+ .++|...|.+..+. ..-+...|+-|-..|.+ .|++++|.
T Consensus 127 ~~TynaLIdglcK~G~--------------leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----~G~~~eA~--- 185 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQ--------------LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----QGAFKELV--- 185 (1134)
T ss_dssp HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----HTCHHHHH---
T ss_pred HHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----CCCHHHHH---
Confidence 4457888889999999 99999999775432 23367789999999999 99999999
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 234 KQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 234 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
+.|+...+. .| +..+|+.+-.++.+.|+. .++|.++|++..+..
T Consensus 186 ----~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~---------~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 186 ----YVLFMVKDAGLTP-DLLSYAAALQCMGRQDQD---------AGTIERCLEQMSQEG 231 (1134)
T ss_dssp ----HHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcC
Confidence 557666543 35 578888888899999875 368889999988764
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.30 E-value=4.3 Score=37.20 Aligned_cols=176 Identities=10% Similarity=-0.106 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHhcCccccCCCCchhhhHHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALY-----NWALVLQESADNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----~lg~~~~~~~~~~~a~~~~~~~~~~~~~ 190 (365)
.++++...+.++-.-...+...|++++-..++.......+..+.+.. .+-..+....+ ....+++-
T Consensus 11 ~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~---------~~~~~~~~ 81 (394)
T 3txn_A 11 DEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA---------GTGIEVQL 81 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC---------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC---------cHHHHHHH
Confidence 44566667777766666677778888888777766554443333221 11112211111 01222333
Q ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcC
Q 017806 191 ACKKYDEATRLCPTLHD--AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSA 266 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~ 266 (365)
+.++++-+-.-.-.... .-..||.+|.. .|+|.+|.+.+.+..+.+.+ .|.+ -.+++..-..+|..+++
T Consensus 82 ~~~~~~~a~~~~r~flr~~l~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~---~dd~~~llev~lle~~~~~~~~n 154 (394)
T 3txn_A 82 CKDCIEWAKQEKRTFLRQSLEARLIALYFD----TALYTEALALGAQLLRELKK---LDDKNLLVEVQLLESKTYHALSN 154 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTT---SSCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHhcc
Confidence 33333333221111112 33489999999 99999999776665555543 2222 24667777888889998
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhC---CCCHHH----HHHHHHHHH-HhhhhhhhhcC
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQ---FDFHRA----IYNLGTVLY-GLAEDTLRTGG 317 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~----~~~lg~~~~-~~g~~~~a~~~ 317 (365)
+ .++...|.+|.... +.++.. ...-|..+. ..+++..|...
T Consensus 155 ~----------~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~ 203 (394)
T 3txn_A 155 L----------PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSY 203 (394)
T ss_dssp H----------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred H----------HHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHH
Confidence 6 99999999987653 233332 233355555 45555544433
No 257
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=88.20 E-value=2.8 Score=29.34 Aligned_cols=43 Identities=26% Similarity=0.185 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
.+..++..+.. .|+|++||+++.+|..++..|+++- .+..++.
T Consensus 17 ~~~RrAe~ll~----~gkydeAIech~kAa~yL~eAmklt-qs~qa~~ 59 (97)
T 2crb_A 17 QQSRRADRLLA----AGKYEEAISCHRKATTYLSEAMKLT-ESEQAHL 59 (97)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHH
T ss_pred HhhhHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence 34556666777 9999999999999999999999986 4555443
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.70 E-value=9.8 Score=40.10 Aligned_cols=33 Identities=9% Similarity=-0.047 Sum_probs=27.0
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhc
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTG 128 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~ 128 (365)
-+.++..-|.+|.+++ ..|++++|..+|+++..
T Consensus 838 ~~~~~~~~yl~g~~~L-~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYL-KSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp SCCCHHHHHHHHHHHH-HTTCHHHHHHHHHTCCC
T ss_pred ccCCcHHHHHHHHHHH-hcCCHHHHHHHHHHHhh
Confidence 3556666789999995 99999999999998754
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.61 E-value=12 Score=35.53 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=49.1
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHH--------------HHHHh-hccChh-----------hhhhhhhHHHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAME--------------LINSV-TGVDEE-----------GRSRQRILTFAAKR 146 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~--------------~~~~a-l~~~~~-----------~~~~~~~~~~A~~~ 146 (365)
..+.-....||..+.++ +..|+...... .++.+ +..+.. .|...+.+++|...
T Consensus 175 tlD~l~ak~~fY~s~~~-e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~l 253 (523)
T 4b4t_S 175 SLNLINAKLWFYIYLSH-ETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDF 253 (523)
T ss_dssp -----------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHH
Confidence 34555667788888877 67776554321 22222 122222 34555889999999
Q ss_pred HHHHHHhCCCC-------HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 147 YANAIERNPED-------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 147 ~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
..++. +|.. ...++.+|.++...++ |.+|.+++..|+...|.+
T Consensus 254 vsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~--------------Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 254 ISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD--------------YSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTSSCSCS
T ss_pred HhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCcc
Confidence 98884 5543 4567889999999999 999999999999988764
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.06 E-value=12 Score=39.55 Aligned_cols=104 Identities=12% Similarity=-0.096 Sum_probs=73.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HHHHHHHHhc---CCCCHHHHHHHHHHH
Q 017806 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA-------------TKNYEKAVQL---NWNSPQALNNWGLAL 261 (365)
Q Consensus 198 al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A-------------~~~~~~al~~---~p~~~~~~~~lg~~~ 261 (365)
.+...|.++...+.+|.++.. .|++++|..+|.+| +......... ....+..|..+..++
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~----~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LF 909 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKL 909 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHH
T ss_pred HhhhccCCcHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHH
Confidence 445678888888999999999 99999999777664 1122222222 222356677777788
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHhhhhhhhh
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQF-DFHR----AIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~----~~~~lg~~~~~~g~~~~a~ 315 (365)
.+.+.+ +.+++.-+.|++..+ ++.. .|.++=..+..+|+.++|.
T Consensus 910 e~~~~~----------~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 910 FEESAY----------IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HHTSCC----------HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred HHcCCH----------HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 787876 999999999998754 3332 5667777777788776653
No 261
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.89 E-value=3.4 Score=30.45 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+++|..+..++|.++ . .|+-+.|+++|.+.|..++++|.+..+
T Consensus 19 h~~AF~~Is~AL~~D---------------E----~g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTD---------------E----LGQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHH---------------H----HTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHhhhh---------------h----cCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 666666666666654 3 799999999999999999999998764
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.11 E-value=9.6 Score=35.47 Aligned_cols=101 Identities=11% Similarity=-0.050 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-C---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-C---PT--LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-~---p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
......|+.++...|+ +.+|...+.....- . +. -.+.+.....++.. .+++..|..
T Consensus 137 arl~~~La~i~e~~g~--------------~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~----~~d~~~a~~ 198 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGK--------------IDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL----KGDYSQATV 198 (445)
T ss_dssp HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 4556788999999999 99999999987532 1 11 24677778888888 999999996
Q ss_pred HHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 232 LWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+.++... +.. .+.. ...+...|..+...+++ .+|-++|.+++..
T Consensus 199 ~~~ki~~~---~~~-~~~~~~lk~~~~~~~~~~~~~e~~y----------~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 199 LSRKILKK---TFK-NPKYESLKLEYYNLLVKISLHKREY----------LEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHH---HHH-SSCCHHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHh---hcc-cCCcHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhc
Confidence 55444221 222 2333 34666778888888885 9999999988865
No 263
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.75 E-value=18 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
++.|.+..+.. ++...|..||..... .|+++-|+ .+|+++
T Consensus 21 l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~----~gn~~lAe-------~cy~~~ 60 (177)
T 3mkq_B 21 LDAALDEAKKL-----NDSITWERLIQEALA----QGNASLAE-------MIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHH-----CCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHT
T ss_pred HHHHHHHHHHh-----CCHHHHHHHHHHHHH----cCChHHHH-------HHHHHh
Confidence 99999887765 678899999999999 99999999 556654
No 264
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=77.04 E-value=34 Score=35.53 Aligned_cols=84 Identities=7% Similarity=-0.105 Sum_probs=60.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHH
Q 017806 133 GRSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHD 207 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 207 (365)
++.+.|+.++|...|.+.-+. -.-+...|+.|-..|...|+ +++|.+.|++..+.. .-|.-
T Consensus 136 glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~--------------~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA--------------FKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHcCCCCcHH
Confidence 455668888888888654332 12357788888888999998 999999999887753 12566
Q ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRT-KEAEELWK 234 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~-~~A~~~~~ 234 (365)
.|+.+-.++.+ .|+. ++|.++++
T Consensus 202 TYntLI~glcK----~G~~~e~A~~Ll~ 225 (1134)
T 3spa_A 202 SYAAALQCMGR----QDQDAGTIERCLE 225 (1134)
T ss_dssp HHHHHHHHHHH----HTCCHHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCcHHHHHHHHH
Confidence 67777777877 8874 67775543
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.07 E-value=21 Score=34.78 Aligned_cols=80 Identities=11% Similarity=-0.095 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
..++...+.+......++.......+ .... .|++..|. .+|.+.-..........+.+|.++..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r-~Alr----~~d~~~a~-------~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~ 335 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVR-MALG----TGDRRGLN-------TWLARLPMEAKEKDEWRYWQADLLLERGRE 335 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHH-HHHH----HTCHHHHH-------HHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHH-HHHH----CCCHHHHH-------HHHHHccccccccHhHHHHHHHHHHHcCCH
Confidence 34566666665544443333333333 3445 78888888 666654333334577788888888888886
Q ss_pred chhHHhhhHHHHHHHHHHHHHH
Q 017806 268 VPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~ 289 (365)
++|..+|+++..
T Consensus 336 ----------~~a~~~~~~~a~ 347 (618)
T 1qsa_A 336 ----------AEAKEILHQLMQ 347 (618)
T ss_dssp ----------HHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHHhc
Confidence 888888888875
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.89 E-value=46 Score=29.21 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
..++|+++-.+.-...-.++..+..+|..|++.+++
T Consensus 115 fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~ 150 (312)
T 2wpv_A 115 VITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFV 150 (312)
T ss_dssp HHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCH
Confidence 344444555443222346899999999999999997
No 267
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=72.46 E-value=42 Score=28.12 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH---------------H
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRA---------------K 221 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~---------------~ 221 (365)
..-+..++.+..+.++ |++.+.+.+++.+.++. +.+=.+.|..+|-... +
T Consensus 8 re~~v~~AklaeqaeR--------------yddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqk 73 (236)
T 3iqu_A 8 RASLIQKAKLAEQAER--------------YEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQK 73 (236)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 3456778888999999 99999999999999876 4455555555554421 1
Q ss_pred h--cCC--HHHHHHHHH------------HHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 222 M--RGR--TKEAEELWK------------QATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 222 ~--~g~--~~~A~~~~~------------~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
. .|. ....+..|. ..+..+.+-+--...+.+ .+-..|..|..+..+.....+..-.+.|.
T Consensus 74 e~~~~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~ 153 (236)
T 3iqu_A 74 SNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSAR 153 (236)
T ss_dssp HTSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHH
Confidence 1 011 001111111 111222221111122222 24456777777666544444555667888
Q ss_pred HHHHHHHH-----hCCCCHH---HHHHHHHHHH
Q 017806 282 SKFRAAIQ-----LQFDFHR---AIYNLGTVLY 306 (365)
Q Consensus 282 ~~~~~al~-----~~p~~~~---~~~~lg~~~~ 306 (365)
..|++|++ +.|.+|- ...|.+..|+
T Consensus 154 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyy 186 (236)
T 3iqu_A 154 SAYQEAMDISKKEMPPTNPIRLGLALNFSVFHY 186 (236)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHH
Confidence 88888875 4678863 3334444444
No 268
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=69.77 E-value=10 Score=26.08 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=25.1
Q ss_pred hhcHHHHHHHHHHhhccChhhhhhh--hhHHHHHHHHHHHHHhCCC
Q 017806 113 AEQNNAAMELINSVTGVDEEGRSRQ--RILTFAAKRYANAIERNPE 156 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~A~~~~~~al~~~p~ 156 (365)
..-.+.|+.+..+|+..|..+.+.. ..|.+|++.|..+++..|+
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d 58 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRD 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3446788888898888765544222 2344444444455544443
No 269
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=68.70 E-value=12 Score=25.64 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhccChhhhhhh--hhHHHHHHHHHHHHHhCCC
Q 017806 116 NNAAMELINSVTGVDEEGRSRQ--RILTFAAKRYANAIERNPE 156 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~--~~~~~A~~~~~~al~~~p~ 156 (365)
.+.|+.+..+|+..|..+.+.. ..|.+|++.|..+++..|+
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d 50 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPE 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4688888888888765544222 2344444445555554443
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.09 E-value=65 Score=33.13 Aligned_cols=87 Identities=14% Similarity=-0.017 Sum_probs=59.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------HHHHHHHhc-CCC--CHHHHHHHHH
Q 017806 196 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT-------------KNYEKAVQL-NWN--SPQALNNWGL 259 (365)
Q Consensus 196 ~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~-------------~~~~~al~~-~p~--~~~~~~~lg~ 259 (365)
...+...|.++-.-|-+|.++.. .|++++|..+|++|- ......+.. .++ ...+|.....
T Consensus 830 ~eL~~~~~~t~~~~yv~gr~~L~----~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~ 905 (950)
T 4gq2_M 830 MQLIGWLNSDPIAVYLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSK 905 (950)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHH----TTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHhhcCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHH
Confidence 34566788888888999999999 999999998776641 111111211 111 2346666677
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-CCCCHH
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQL-QFDFHR 296 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 296 (365)
++...+- |+-++...+.||+. .+++..
T Consensus 906 LFE~~~a----------~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 906 KLFEESA----------YIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHTTC----------HHHHHHHHHHHHHTCCSCCHH
T ss_pred HHHhcCC----------HHHHHHHHHHHHhhcccCCcc
Confidence 7777776 49999999999975 445544
No 271
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=65.41 E-value=5.8 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+++|..+..++|.++..+ . .|+-++|+.+|.+.+..+.+.+.+.-+
T Consensus 13 h~~AF~~Is~aL~~DE~~------------~----~G~k~~A~~~YkkGi~eL~~Gi~V~~~ 58 (89)
T 3eab_A 13 HKQAFEYISIALRIDEDE------------K----AGQKEQAVEWYKKGIEELEKGIAVIVT 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHS------------C----SSSGGGSHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhhhcc------------c----CCCHHHHHHHHHHHHHHHHhhcCCccC
Confidence 777777777777665321 0 299999999999999999999997643
No 272
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=65.32 E-value=27 Score=24.50 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=25.6
Q ss_pred hcHHHHHHHHHHhhccChhhhhhh--hhHHHHHHHHHHHHHhCCCC
Q 017806 114 EQNNAAMELINSVTGVDEEGRSRQ--RILTFAAKRYANAIERNPED 157 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~ 157 (365)
.-.+.|+.++.+|+..+..+.+.. ..|..|+++|..++...|+.
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~ 55 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKES 55 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 335688888888887765543221 33445555555555555543
No 273
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=64.30 E-value=65 Score=27.18 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH---------------Hh
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRA---------------KM 222 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~---------------~~ 222 (365)
.-+..++.+..+.++ |++.+.+.+++++.++. +.+=.+.|..+|-... +.
T Consensus 5 e~lv~~AklaeqaeR--------------yddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke 70 (248)
T 3uzd_A 5 EQLVQKARLAEQAER--------------YDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKT 70 (248)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Confidence 345678888889999 99999999999998876 4444555555554311 11
Q ss_pred --cCC--HHHHHHHHHH------------HHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 223 --RGR--TKEAEELWKQ------------ATKNYEKAVQLNWNSP------QALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 223 --~g~--~~~A~~~~~~------------A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
.|. ....+..|.+ .+..+.+-+--...++ ..+-..|..|..+-.+.....+..-.+.|
T Consensus 71 ~~~~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a 150 (248)
T 3uzd_A 71 SADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESS 150 (248)
T ss_dssp C---CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 111 1122222211 1222222221111112 23445788888877765555666667888
Q ss_pred HHHHHHHHH-----hCCCCHH---HHHHHHHHHHH
Q 017806 281 ISKFRAAIQ-----LQFDFHR---AIYNLGTVLYG 307 (365)
Q Consensus 281 ~~~~~~al~-----~~p~~~~---~~~~lg~~~~~ 307 (365)
...|++|+. +.|.+|- ...|.+..|+.
T Consensus 151 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYE 185 (248)
T 3uzd_A 151 EKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYE 185 (248)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Confidence 888988875 4677763 33344444443
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.24 E-value=24 Score=32.57 Aligned_cols=87 Identities=13% Similarity=-0.017 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
..+++.+..+++-......-..++..+|..+.. .|++++|.+.|.+..... .-...-.+.+...-.++...+
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~----~~~~~kid~~l~~irl~l~~~ 182 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKA----ISTGAKIDVMLTIARLGFFYN 182 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHH----TCCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHhc
Confidence 335555444433111223345678999999999 999999995544432211 111234678888888888899
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
++ ..+...+.++-.+
T Consensus 183 d~----------~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 183 DQ----------LYVKEKLEAVNSM 197 (429)
T ss_dssp CH----------HHHHHHHHHHHHH
T ss_pred cH----------HHHHHHHHHHHHh
Confidence 96 9999999998765
No 275
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=60.46 E-value=43 Score=24.63 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhccChhhhhhh--hhHHHHHHHHHHHHHhCCCCHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQ--RILTFAAKRYANAIERNPEDYD 159 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~ 159 (365)
.+.|+.++.+|+..+..+.+.. ..|..|+++|..+++..+.+..
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 5678888888876544332111 2233444444444544444443
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.79 E-value=1.3e+02 Score=27.77 Aligned_cols=89 Identities=7% Similarity=-0.021 Sum_probs=64.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH---hCCC
Q 017806 134 RSRQRILTFAAKRYANAIERN--PE----DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR---LCPT 204 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~---~~p~ 204 (365)
+...|++.+|...+.....-. .. -.+.+.....++...++ +..|...++++.. -.+.
T Consensus 147 ~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d--------------~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 147 KKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD--------------YSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHSSC
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhhcccCC
Confidence 345589999999988875421 11 14567788888999999 9999999999743 2333
Q ss_pred C----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 205 L----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 205 ~----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
. ...+...|.++.. .++|.+|-.+|..+...+
T Consensus 213 ~~~lk~~~~~~~~~~~~~----e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLH----KREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp CHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcc
Confidence 3 3456778888888 999999997666554443
No 277
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=54.49 E-value=1e+02 Score=26.23 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHH---------------
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--PT-LHDAFYNWAIAISDRA--------------- 220 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~--------------- 220 (365)
.-+..++.+..+.++ |++.+.+.+++++.+ +. +.+=.+.|..+|-...
T Consensus 9 e~~v~~AkLaeqaeR--------------yddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieq 74 (260)
T 1o9d_A 9 EENVYMAKLAEQAER--------------YEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 74 (260)
T ss_dssp HHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------------HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 445678888889999 999999999999987 54 4444555555553311
Q ss_pred Hh--cCCHH--HHHHHHH------------HHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 221 KM--RGRTK--EAEELWK------------QATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 221 ~~--~g~~~--~A~~~~~------------~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
+. .|+-. .-+..|. ..+..+.+.|--...+ ...+-..|..|..+..+.....+..-.+.|
T Consensus 75 ke~~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 154 (260)
T 1o9d_A 75 KEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 154 (260)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhhccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 11 12211 1111111 1222222222111222 223445687787777765555566667788
Q ss_pred HHHHHHHHH-----hCCCCHH---HHHHHHHHHHH-hhhhhhh
Q 017806 281 ISKFRAAIQ-----LQFDFHR---AIYNLGTVLYG-LAEDTLR 314 (365)
Q Consensus 281 ~~~~~~al~-----~~p~~~~---~~~~lg~~~~~-~g~~~~a 314 (365)
...|++|+. +.|.+|- ...|.+..|+. +++..++
T Consensus 155 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~A 197 (260)
T 1o9d_A 155 LTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA 197 (260)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 889998885 4677763 33444444444 3444433
No 278
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.14 E-value=24 Score=23.91 Aligned_cols=36 Identities=11% Similarity=-0.063 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
...+|+=+.- .|+|+.|+.+|+.+++.+.+-+..-.
T Consensus 15 ~~k~ARe~Al----~GnYdta~~yY~g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 15 NVKLAREYAL----LGNYDSAMVYYQGVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHH----HTCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHH----hcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456777777 99999999999999999888876543
No 279
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.12 E-value=38 Score=22.61 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
..+|..+...|+ +++|..+|-+|+...|.-.+...
T Consensus 21 V~~GE~L~~~g~--------------~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 21 IQLGEELLAQGD--------------YEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHHTTC--------------HHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHCCC--------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 467888999999 99999999999999988655443
No 280
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.05 E-value=53 Score=22.59 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=20.2
Q ss_pred hcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHH
Q 017806 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~ 152 (365)
.+...|+.+..+|+..+..+. |++|+.+|..+++
T Consensus 11 ~~~~~A~~lv~~Ave~D~~g~-----y~eAl~lY~~Aie 44 (86)
T 4a5x_A 11 PQSTAAATVLKRAVELDSESR-----YPQALVCYQEGID 44 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 345677888888877754443 4455555544443
No 281
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=51.94 E-value=1e+02 Score=25.67 Aligned_cols=135 Identities=10% Similarity=0.107 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH---------------Hh
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRA---------------KM 222 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~---------------~~ 222 (365)
+-+..++.+..+.++ |++.+.+.+++++.++. +.+=.+.|..+|-... +.
T Consensus 6 e~~v~~AklaeqaeR--------------yddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~ 71 (234)
T 2br9_A 6 EDLVYQAKLAEQAER--------------YDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE 71 (234)
T ss_dssp HHHHHHHHHHHHHTC--------------HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--------------HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 445678888888999 99999999999998775 4444555555553311 10
Q ss_pred --cCCHH--HHHHHHH------------HHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 223 --RGRTK--EAEELWK------------QATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 223 --~g~~~--~A~~~~~------------~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
.|+-. ..+..|. ..+..+.+.+--...+ .-.+-..|..|..+..+.....+..-.+.|..
T Consensus 72 ~~k~~~~~~~~i~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~ 151 (234)
T 2br9_A 72 ENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLV 151 (234)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHH
Confidence 12211 1111111 1122222222111122 22344578888877777655666667788888
Q ss_pred HHHHHHHh-----CCCCHH---HHHHHHHHHHH
Q 017806 283 KFRAAIQL-----QFDFHR---AIYNLGTVLYG 307 (365)
Q Consensus 283 ~~~~al~~-----~p~~~~---~~~~lg~~~~~ 307 (365)
.|++|+++ .|.+|- ...|.+..|+.
T Consensus 152 aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yE 184 (234)
T 2br9_A 152 AYKAASDIAMTELPPTHPIRLGLALNFSVFYYE 184 (234)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHH
Confidence 99988854 677763 33344444443
No 282
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.21 E-value=62 Score=22.00 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~ 152 (365)
.+.|+.+..+|+..+.. |++++|+.+|..+++
T Consensus 10 l~~A~~l~~~Av~~D~~-----g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTA-----TQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH
Confidence 56788888888765444 345555555555444
No 283
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=46.42 E-value=80 Score=24.26 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
+|+-++-. +.+...+.-++-++..+..+|.+|.+.|+. .+|.+.+.+|-+.
T Consensus 104 ~~KkDqLd-------ki~~~~l~n~~~~~~~l~kia~Ay~Klg~~----------r~a~eLl~~AC~k 154 (172)
T 1wy6_A 104 QGKRDKLE-------EIGREILKNNEVSASILVAIANALRRVGDE----------RDATTLLIEACKK 154 (172)
T ss_dssp TTCHHHHH-------HHHHHHC--CCSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHT
T ss_pred hccHhHHH-------HHHHHHhccCCCChHHHHHHHHHHHHhcch----------hhHHHHHHHHHHh
Confidence 67776655 556665555666799999999999999997 9999999988765
No 284
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.30 E-value=17 Score=26.77 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=27.0
Q ss_pred hhhcHHHHHHHHHHhhccChhhhh--hhhhHHHHHHHHHHHHHhCC
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRS--RQRILTFAAKRYANAIERNP 155 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~A~~~~~~al~~~p 155 (365)
....+++|..+.+++|..+..+.- ....|.+.+..+.++|.+..
T Consensus 15 ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 15 IREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccc
Confidence 446688899999999988875321 12334445555555555544
No 285
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=45.27 E-value=4.5 Score=34.50 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
...|+....+|++.+ . .|+|.+|+.+|..|+..+..+++..|+.
T Consensus 20 ~~~Ai~lv~~AVe~D---------------~----~g~y~eAl~lY~eaIe~Ll~alk~e~d~ 63 (257)
T 2ymb_A 20 STAAATVLKRAVELD---------------S----ESRYPQALVCYQEGIDLLLQVLKGTKDN 63 (257)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 666777777777655 3 8999999999999999999999876653
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.13 E-value=51 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.020 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
....+.+|.++...++ |.+|.+++..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~--------------y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSD--------------FKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhC--------------HHHHHHHHHHHHHHCCHhH
Confidence 4467899999999999 9999999999999988754
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.64 E-value=1.2e+02 Score=31.22 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=53.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-hCCC----------------------C
Q 017806 149 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPT----------------------L 205 (365)
Q Consensus 149 ~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-~~p~----------------------~ 205 (365)
..+..-|.++..-+.+|.++...|+ +++|..+|++|-. +... .
T Consensus 831 eL~~~~~~t~~~~yv~gr~~L~~ge--------------~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~ 896 (950)
T 4gq2_M 831 QLIGWLNSDPIAVYLKALIYLKSKE--------------AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL 896 (950)
T ss_dssp HHGGGCCSSHHHHHHHHHHHHHTTC--------------HHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHH
T ss_pred HHHhhcCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchh
Confidence 3455668888888999999999999 9999999998742 1111 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHH
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQ 252 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~ 252 (365)
...|.....++.. .+-++-++ ...+.|++. .+++..
T Consensus 897 ~~YY~hV~~LFE~----~~a~~~vi-------~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 897 SCYYLHLSKKLFE----ESAYIDAL-------EFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHhhcccCCcc
Confidence 2355666666666 77777777 445666643 344443
No 288
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=42.42 E-value=1.8e+02 Score=25.70 Aligned_cols=123 Identities=11% Similarity=-0.096 Sum_probs=0.0
Q ss_pred hhhhhhH---HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---
Q 017806 134 RSRQRIL---TFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--- 201 (365)
Q Consensus 134 ~~~~~~~---~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--- 201 (365)
....|+| -+|.+.|+-..... .+-.+.++.=+..+...|. +.-|.+...-.++.
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q--------------~~sg~DL~~llvevy~~ 87 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQ--------------GGSGGDLAVLLVDTFRQ 87 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCC--------------cchHHHHHHHHHHHHHH
Q ss_pred --CCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 202 --CPTLHDAFYNWAIAISDRAKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 202 --~p~~~~~~~~lg~~~~~~~~~~g~-~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
-|-+.....++..++.. ... -..=..+.++|++|-.+.=...-.+++.+..+|..|++.+++ .
T Consensus 88 ~~~~~~~~~~~rL~~L~~~----~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~----------~ 153 (336)
T 3lpz_A 88 AGQRVDGASRGKLLGCLRL----FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEF----------E 153 (336)
T ss_dssp HTCCCCHHHHHHHHHHHTT----SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCH----------H
T ss_pred cCCCCCHHHHHHHHHHHHh----CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCH----------H
Q ss_pred HHHHHH
Q 017806 279 TAISKF 284 (365)
Q Consensus 279 ~A~~~~ 284 (365)
+|...|
T Consensus 154 ~Ae~H~ 159 (336)
T 3lpz_A 154 AAEKHL 159 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.92 E-value=2.5e+02 Score=27.16 Aligned_cols=106 Identities=11% Similarity=-0.076 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDA----FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~----~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
.+.|...+.+......-+..- +..++.-+.. .+...++. .++.+......++.......+.+ .+
T Consensus 230 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~e~~~r~A-lr 297 (618)
T 1qsa_A 230 AENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG----NDVTDEQA-------KWRDDAIMRSQSTSLIERRVRMA-LG 297 (618)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS----TTCCHHHH-------HHHHHHHHTCCCHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH----cCCChHHH-------HHHHhccccCCChHHHHHHHHHH-HH
Confidence 677777777665433322222 2222222222 34244555 45555554433333333333444 45
Q ss_pred hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
.|++ ..|...|.+.-..........+.+|.++..+|+...+.
T Consensus 298 ~~d~----------~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~ 339 (618)
T 1qsa_A 298 TGDR----------RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK 339 (618)
T ss_dssp HTCH----------HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCH----------HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence 6885 99999998755544456888999999999998766543
No 290
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=41.56 E-value=82 Score=28.26 Aligned_cols=66 Identities=15% Similarity=0.013 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPTLHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
..+.++.+||.+-...-. .. ...++..|.+|+.. ...+.-.|..+|-.+++ .+++.+|+
T Consensus 253 rYPmALgnLgDLEe~~pt-----~g-------r~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR----~~~~reAl 316 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPT-----PG-------RPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYR----KKKYYEAI 316 (472)
T ss_dssp TCHHHHHHHHHHHHHSCC-----TT-------SCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHH
T ss_pred hCchhhcchhhHHhcCCC-----CC-------CCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhh----cchHHHHH
Confidence 456666666665543221 00 12366667776654 34466778888998888 99999999
Q ss_pred HHHHHHH
Q 017806 231 ELWKQAT 237 (365)
Q Consensus 231 ~~~~~A~ 237 (365)
..|..|-
T Consensus 317 ~~WA~Aa 323 (472)
T 3re2_A 317 ASWVDAG 323 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776653
No 291
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.92 E-value=1.3e+02 Score=23.40 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYN-WAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~-lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
+..|..++..|+ |-+|-+.++.+-...+.. ...+.. ++.++.. .+.|+...|..++.
T Consensus 36 ~~~~i~lFn~g~--------------yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H--~~rgN~~GA~~ll~ 99 (161)
T 2ijq_A 36 VVHGVRLYNSGE--------------FHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKH--FDFEDDDGMRSLFR 99 (161)
T ss_dssp HHHHHHHHHTTC--------------HHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHH
T ss_pred HHHHHHHHhCCC--------------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH--HHhCCHHHHHHHHH
Confidence 456677778888 999999999988776543 222333 3333332 22899999997766
Q ss_pred HHHHHHHH
Q 017806 235 QATKNYEK 242 (365)
Q Consensus 235 ~A~~~~~~ 242 (365)
+|+..+..
T Consensus 100 ~Al~~L~~ 107 (161)
T 2ijq_A 100 TSLQYFRG 107 (161)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 66655543
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.69 E-value=1.5e+02 Score=24.04 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV--QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 203 p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
|....+|...+..+. .+...++. ..|.-.. .+.-..+..|...|..+...|++ .+|
T Consensus 77 ~RYLklWl~Ya~~~~-----~~~~~~p~-------~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~----------~~A 134 (202)
T 3esl_A 77 PRFLKIWIWYINLFL-----SNNFHESE-------NTFKYMFNKGIGTKLSLFYEEFSKLLENAQFF----------LEA 134 (202)
T ss_dssp HHHHHHHHHHHHHHS-----TTCHHHHH-------HHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCH----------HHH
T ss_pred HHHHHHHHHHHHhhc-----ccccCCHH-------HHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH----------HHH
Confidence 334566776666541 23345666 3344443 45567889999999999999996 999
Q ss_pred HHHHHHHHHhCC
Q 017806 281 ISKFRAAIQLQF 292 (365)
Q Consensus 281 ~~~~~~al~~~p 292 (365)
...|+.+++..-
T Consensus 135 ~~Vy~~GI~~~A 146 (202)
T 3esl_A 135 KVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998764
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=39.53 E-value=53 Score=22.99 Aligned_cols=27 Identities=26% Similarity=0.065 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~ 200 (365)
.+-.++..+...|+ |++||++.+++..
T Consensus 17 ~~~RrAe~ll~~gk--------------ydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGK--------------YEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTC--------------HHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCC--------------HHHHHHHHHHHHH
Confidence 34556677777788 9999999988864
No 294
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=39.13 E-value=1.5e+02 Score=30.34 Aligned_cols=170 Identities=12% Similarity=0.021 Sum_probs=88.6
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccC----hh---------hhhhhhhHHHHHHHHHHHHHhCC---C---CH--
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVD----EE---------GRSRQRILTFAAKRYANAIERNP---E---DY-- 158 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~----~~---------~~~~~~~~~~A~~~~~~al~~~p---~---~~-- 158 (365)
.+...+|.++ .|+.++++..+..-+... +. |....|...+++..+...+..+. + ..
T Consensus 377 sA~aSLGlIh---~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~i 453 (963)
T 4ady_A 377 TATASLGVIH---KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVL 453 (963)
T ss_dssp HHHHHHHHHT---SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHHhhhhc---cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHH
Confidence 3445555544 366677888887777521 11 23333444567887777776532 1 11
Q ss_pred --HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 159 --DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 159 --~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
.+-..||.++.-.++ +++++.+...+.-+... ..+-..+|.++.. .|+-+...
T Consensus 454 r~gAaLGLGla~~GS~~---------------eev~e~L~~~L~dd~~~~~~~AalALGli~vG----Tgn~~ai~---- 510 (963)
T 4ady_A 454 LHGASLGIGLAAMGSAN---------------IEVYEALKEVLYNDSATSGEAAALGMGLCMLG----TGKPEAIH---- 510 (963)
T ss_dssp HHHHHHHHHHHSTTCCC---------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT----CCCHHHHH----
T ss_pred HHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc----cCCHHHHH----
Confidence 234466666555454 56777787777644322 1345567777766 67655444
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHhhh
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY----NLGTVLYGLAE 310 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~lg~~~~~~g~ 310 (365)
..+..+.+...+...-...+|..+...|+ +++....-+.+..+. ++...+ -+|.+|...|+
T Consensus 511 ---~LL~~~~e~~~e~vrR~aalgLGll~~g~-----------~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 511 ---DMFTYSQETQHGNITRGLAVGLALINYGR-----------QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHTTTC-----------GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred ---HHHHHHhccCcHHHHHHHHHHHHhhhCCC-----------hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 33444443332222333345555556777 444455545554433 343333 34545555554
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=38.11 E-value=68 Score=26.03 Aligned_cols=35 Identities=11% Similarity=-0.162 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
....+.+|..+...+++ .+|...+.+|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y----------~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDF----------KQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCH----------HHHHHHHHHHHHHCCHhH
Confidence 46788999999999996 999999999999988664
No 296
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=38.08 E-value=1.4e+02 Score=23.00 Aligned_cols=76 Identities=17% Similarity=0.041 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWAL-VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
|++..-+.+|-+. +-.+. +..+|. .+...|+ -++-...+...+.-.+-++..+..+|.+|
T Consensus 75 ~NlKrVi~C~~~~---n~~se--~vd~ALd~lv~~~K--------------kDqLdki~~~~l~n~~~~~~~l~kia~Ay 135 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NTLNE--HVNKALDILVIQGK--------------RDKLEEIGREILKNNEVSASILVAIANAL 135 (172)
T ss_dssp SCTHHHHHHHHHT---TCCCH--HHHHHHHHHHHTTC--------------HHHHHHHHHHHC--CCSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHh---cchHH--HHHHHHHHHHHhcc--------------HhHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 5666666666432 22222 344444 3345566 66666666665566666799999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 017806 217 SDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A 236 (365)
.+ .|+..+|.+++.+|
T Consensus 136 ~K----lg~~r~a~eLl~~A 151 (172)
T 1wy6_A 136 RR----VGDERDATTLLIEA 151 (172)
T ss_dssp HH----TTCHHHHHHHHHHH
T ss_pred HH----hcchhhHHHHHHHH
Confidence 99 99999999665444
No 297
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=37.91 E-value=65 Score=28.90 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 278 RTAISKFRAAIQL-----QFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 278 ~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
..++.+|.+||.. .-.+...|..+|-++++.++..++...
T Consensus 274 ~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~ 318 (472)
T 3re2_A 274 PPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIAS 318 (472)
T ss_dssp CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHH
Confidence 4577788887765 345667788899999999988776654
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.62 E-value=1.6e+02 Score=23.83 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 188 LEEACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 188 ~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
..++...|.-... +.-..+..|...|..+.. .|++.+|. ..|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~----~g~~~~A~-------~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN----AQFFLEAK-------VLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcC
Confidence 5677788877765 456789999999999999 99999999 6677777655
No 299
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=37.13 E-value=52 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA 208 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 208 (365)
..+|..+...|+ ++.|+.+|-+|+...|.-...
T Consensus 24 V~lGE~L~~~g~--------------~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGD--------------YEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTC--------------HHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCC--------------HHHHHHHHHHHHHHcCCHHHH
Confidence 467888889999 999999999999988764443
No 300
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=36.40 E-value=62 Score=29.60 Aligned_cols=40 Identities=5% Similarity=-0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 278 RTAISKFRAAIQL-----QFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 278 ~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
..++.+|.+|+.. .-.+...|..+|-++++.++..++...
T Consensus 296 ~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~ 340 (550)
T 3u84_A 296 PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQA 340 (550)
T ss_dssp CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHH
Confidence 3567777777754 345667788899999999988776654
No 301
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.15 E-value=1.3e+02 Score=27.66 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=32.0
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 191 ACKKYDEATRL-----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 191 A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
++..|.+|+.. ...+.-.|..+|-.+++ .+++.+|+..|..|
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR----~~~~reAl~~WA~A 344 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR----NRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhh----cchHHHHHHHHHHH
Confidence 56666666654 33466778888888888 99999999887665
No 302
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=32.27 E-value=1.1e+02 Score=20.29 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
..+|..+.. .|+++++. .+|-+|+...|+-.+.
T Consensus 21 V~~GE~L~~----~g~~~~~~-------~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLA----QGDYEKGV-------DHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHH----TTCHHHHH-------HHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHH----CCCHHHHH-------HHHHHHHHHcCCHHHH
Confidence 468888888 99999988 7788888888765443
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.80 E-value=1.8e+02 Score=22.64 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC------HHHHHH-HHHHH--HHhcCcchhHHhhhHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS------PQALNN-WGLAL--QELSAIVPAREKQTIVRT 279 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~------~~~~~~-lg~~~--~~~~~~~~~~~~~~~~~~ 279 (365)
-+.-|..++. .|+|=+|- ..++..-...+.. ...+.. ++.++ .+.|+. .-
T Consensus 35 ~~~~~i~lFn----~g~yfeaH-------EvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~----------~G 93 (161)
T 2ijq_A 35 AVVHGVRLYN----SGEFHESH-------DCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDD----------DG 93 (161)
T ss_dssp HHHHHHHHHH----TTCHHHHH-------HHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCH----------HH
T ss_pred HHHHHHHHHh----CCCchHHH-------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCH----------HH
Confidence 3455667777 89999999 5566666554433 233334 43333 445664 99
Q ss_pred HHHHHHHHHHh
Q 017806 280 AISKFRAAIQL 290 (365)
Q Consensus 280 A~~~~~~al~~ 290 (365)
|...+.+++..
T Consensus 94 A~~ll~~Al~~ 104 (161)
T 2ijq_A 94 MRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 304
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=30.90 E-value=1.5e+02 Score=27.22 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHH--HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHhcCCHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEE--ACKKYDEATRL-----CPTLHDAFYNWAIAISDRAKMRGRTKE 228 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~--A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~g~~~~ 228 (365)
..+.++.+||.+-..... ... ++..|.+|+.. ...+.-.|..+|-.+++ .+++.+
T Consensus 260 ~YPmALgnLgDLEei~pt--------------~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R----~~~~~e 321 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPT--------------PGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR----NRNVRE 321 (489)
T ss_dssp TCHHHHHHHHHHHHHSCC--------------TTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH----TTCHHH
T ss_pred hcchhhhcccCHhhcCCC--------------CCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHH----hhhHHH
Q ss_pred HHHHHHHHHHHHHH
Q 017806 229 AEELWKQATKNYEK 242 (365)
Q Consensus 229 A~~~~~~A~~~~~~ 242 (365)
|+..|..|-...++
T Consensus 322 Al~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 322 ALQAWADTATVIQD 335 (489)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhhhhh
No 305
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=29.56 E-value=11 Score=34.95 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
++.|+++..+|++.+ . .|+|++|+.+|..|+..|..+++..
T Consensus 8 ~~~A~~~~~~Av~~D---------------~----~g~~~eA~~~Y~~a~~~l~~~~k~e 48 (444)
T 2zan_A 8 LQKAIDLASKAAQED---------------K----AGNYEEALQLYQHAVQYFLHVVKYE 48 (444)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777777776654 3 8899999999999999999988765
No 306
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=26.96 E-value=3e+02 Score=23.54 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHH---HHhc---Ccchh--HHhhhH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW----NSPQALNNWGLAL---QELS---AIVPA--REKQTI 276 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~---~~~~---~~~~~--~~~~~~ 276 (365)
++.+.+-... .|+.++.+.+++.-|+.+.+.|+... -....|.-+|.++ ..+. .+... ..-..-
T Consensus 25 ly~msre~le----~g~i~~sv~LLNGIIHECDRLLR~~e~~~~Lpd~FhAIYAlALl~lSELa~~a~Fk~ede~~V~eF 100 (346)
T 3qtm_A 25 LYEMSREKLE----NDDIDASVSLVFGTIHEADRILRNTEDISTLPKDFHAAYSSALLAVSELFEIAQKRLKETNTEESY 100 (346)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHH
T ss_pred HHHHHHHHhh----ccCchhhhHHHcChHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhHHHhhHHhhccCchhhhHHHH
Confidence 3444455555 89999999999999999999998543 1344555566666 3333 21100 112345
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 277 VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
++.|++-.+-.++..|++.....-++.+++..-+...
T Consensus 101 FDaALERielGLe~~p~s~~L~la~SKILlqrI~~~~ 137 (346)
T 3qtm_A 101 IDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLV 137 (346)
T ss_dssp HHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999988888888877654433
No 307
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=25.99 E-value=2.3e+02 Score=26.55 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=11.1
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~ 241 (365)
.|..++|..+-..|-+.-+
T Consensus 500 yG~~eqAe~l~~~A~~~~~ 518 (526)
T 2wb7_A 500 NGDLEQAKIDAEKAKEYSN 518 (526)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHH
Confidence 6777777755555544333
No 308
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.08 E-value=1.6e+02 Score=28.67 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.+.....|..... .|+|..|. +....++..+|++..+...++.+|.++|..
T Consensus 449 ~~~~~~~a~~~~~----~g~~~wa~-------~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYA----RGEYRWVV-------EVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 3445556666677 89999888 778999999999999999999999999863
No 309
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.37 E-value=1.7e+02 Score=27.08 Aligned_cols=83 Identities=5% Similarity=-0.056 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHhC-----CC--C-----HH----HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 138 RILTFAAKRYANAIERN-----PE--D-----YD----ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~-----p~--~-----~~----~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
..++++.....++...- |+ . -. ....+-.+|+++++ ..-|...++..-..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~--------------~~lckni~k~i~~~ 205 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIES--------------PQLCSNIFKNFQPK 205 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSC--------------CTTHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHhccC
Confidence 46788888888887752 11 1 11 12344567788888 66666666543222
Q ss_pred CC--C--------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 202 CP--T--------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 202 ~p--~--------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.+ . -...+|.+|..+.. .++|.+|.+.+..|..
T Consensus 206 ~~~p~~~~~p~~q~v~Y~YYlGr~~~~----~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 206 SMLAHFNEYQLDQQIEYRYLLGRYYLL----NSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp CCCSCGGGSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCcChhhCCccceEeeeHHHHHHHHH----HccHHHHHHHHHHHHH
Confidence 21 1 24678999999999 9999999955544443
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.02 E-value=1.4e+02 Score=22.98 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHH--hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 238 KNYEKAV--QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 238 ~~~~~al--~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
..|.-.. .+.-..+..|...|..+...|++ .+|.+.|+.+++.+-.
T Consensus 86 ~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~----------~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 86 QFFEFLYNHGIGTLSSPLYIAWAGHLEAQGEL----------QHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCc
Confidence 3455544 34466788999999999999996 9999999999987543
No 311
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=23.78 E-value=3.3e+02 Score=22.99 Aligned_cols=135 Identities=12% Similarity=0.077 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHHH--------------
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC---PT-LHDAFYNWAIAISDRA-------------- 220 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~lg~~~~~~~-------------- 220 (365)
+-+..++.+..+.++ |++.+.+.+++++.+ +. +.+=.+.|..+|-...
T Consensus 29 e~~v~~AkLaeqaeR--------------yddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissie 94 (260)
T 2npm_A 29 ESNVYMAKLAEQAER--------------YDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVE 94 (260)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 445678888888999 999999999999987 54 4444555555554311
Q ss_pred -Hhc--CCHH--HHHHHHH------------HHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHH
Q 017806 221 -KMR--GRTK--EAEELWK------------QATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRT 279 (365)
Q Consensus 221 -~~~--g~~~--~A~~~~~------------~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 279 (365)
+.. |+-. ..+..|. ..+..+.+.+--...+ .-.+-..|..|..+..+.....+..-.+.
T Consensus 95 qke~~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~ 174 (260)
T 2npm_A 95 QKEHSRNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAED 174 (260)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence 111 2211 1111111 1222222222111122 22344568888877777655666677788
Q ss_pred HHHHHHHHHH----hCCCCHH---HHHHHHHHHHH
Q 017806 280 AISKFRAAIQ----LQFDFHR---AIYNLGTVLYG 307 (365)
Q Consensus 280 A~~~~~~al~----~~p~~~~---~~~~lg~~~~~ 307 (365)
|...|++|++ +.|.+|- ...|.+..|+.
T Consensus 175 a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYE 209 (260)
T 2npm_A 175 ALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYE 209 (260)
T ss_dssp HHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999986 4677763 33444444443
No 312
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=23.71 E-value=62 Score=30.25 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCc
Q 017806 228 EAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.|++.|++|+..++++- .-+++....+.+++.-|...|++
T Consensus 450 kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 450 GAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 56666677777777765 23444556666666666666665
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.48 E-value=2.8e+02 Score=22.83 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 190 EACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 190 ~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
.....|..... +.-..+..|...|..+.. .|++.+|. ..|+..++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~----~g~~~~A~-------~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFES----RGLFQKAD-------EVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcC
Confidence 44556665554 456688889999999999 99999999 5566666654
No 314
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=23.41 E-value=3.7e+02 Score=23.37 Aligned_cols=153 Identities=10% Similarity=-0.053 Sum_probs=82.0
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHH---h--CCCCHHHHHHHHHHHHHhcCccccCCCCchhhh
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIE---R--NPEDYDALYNWALVLQESADNVSLDSTSPSKDA 186 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~---~--~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~ 186 (365)
..+++++|++++..+... +...|++..|.+...-.++ . .|-+......+..++..... ....+..
T Consensus 45 ~~~~~~eAidlL~~ga~~----ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~------~~~~r~~ 114 (312)
T 2wpv_A 45 RSKSYEHAIELISQGALS----FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP------SEPNLKD 114 (312)
T ss_dssp HTTCHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT------TCTTHHH
T ss_pred HhcCHHHHHHHHHHHHHH----HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC------CCchHHH
Confidence 567788888886655332 2233445555444332222 1 23334444455555444322 1122233
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-----H----HHHHHHHHHh---cCCCCHHHH
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-----Q----ATKNYEKAVQ---LNWNSPQAL 254 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~-----~----A~~~~~~al~---~~p~~~~~~ 254 (365)
-...|+.+-.+.-...-.++..+..+|..+.. .|++.+|...|= . +--.++...+ ..|...+.+
T Consensus 115 fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf 190 (312)
T 2wpv_A 115 VITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE----GDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF 190 (312)
T ss_dssp HHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 35555655554423233589999999999999 999999997541 1 1111112222 234445555
Q ss_pred HHHHH-HHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 255 NNWGL-ALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 255 ~~lg~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
..++. .|.-+++. ..|...|..-.
T Consensus 191 ~~RaVL~yL~l~n~----------~~A~~~~~~f~ 215 (312)
T 2wpv_A 191 FSRLVFNYLFISNI----------SFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHTTBH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH----------HHHHHHHHHHH
Confidence 55554 45567775 77777766544
No 315
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=23.36 E-value=82 Score=17.52 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 017806 230 EELWKQATKNYEKAVQLN 247 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~ 247 (365)
|+.|++|+..|..+++.+
T Consensus 15 IKayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 15 IKAYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344666667788777643
No 316
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.34 E-value=1.7e+02 Score=28.52 Aligned_cols=52 Identities=13% Similarity=-0.050 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
.+.....|......|+ |.-|.+....++..+|+|..+...++.+|.++|...
T Consensus 449 ~~~~~~~a~~~~~~g~----------~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGE----------YRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4445556666666777 599999999999999999999999999999999543
No 317
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=22.90 E-value=6.3e+02 Score=25.91 Aligned_cols=179 Identities=10% Similarity=0.003 Sum_probs=93.2
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC---hhhhhhhhhHHHHHHHHHHHHH--------------hCC
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD---EEGRSRQRILTFAAKRYANAIE--------------RNP 155 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~A~~~~~~al~--------------~~p 155 (365)
...|...-+......+|+ .+|++++|+.+--.|=.+. ....+.+--..++++.|.+.-. ++|
T Consensus 64 ~~f~~r~laalvaSkvyy-~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~ 142 (963)
T 4ady_A 64 DTFSDREMAALIASKVYY-NLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDP 142 (963)
T ss_dssp TTCTTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCH
T ss_pred CCcchHHHHHHHHHHHhe-eccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCH
Confidence 344555555556667886 8999999999988753333 3333334444566666654432 122
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH---------HHh--CCCC----HHH-HHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA---------TRL--CPTL----HDA-FYNWAIAISDR 219 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a---------l~~--~p~~----~~~-~~~lg~~~~~~ 219 (365)
.-......+-.-+...+. +.+|+...-++ +.. ..+. ... .|.+..+..-
T Consensus 143 rL~~Lv~~iv~~cl~hna--------------e~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~l- 207 (963)
T 4ady_A 143 KLTSIFERMIEKCLKASE--------------LKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITT- 207 (963)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhcc-
Confidence 212222223333334455 66665544433 221 0111 111 1222222211
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
...-+-=.+.++.++..|.+. -.|+ |.....|+.++++. +.+.+.|.+.+. .++....+
T Consensus 208 ---v~p~~fr~~vLr~l~~Iy~k~--~~~d----y~~a~~~ai~LnD~----------~li~~if~~l~~--~~d~l~ay 266 (963)
T 4ady_A 208 ---VTNSKFRSSILRKSFDFLMNM--PNCD----YLTLNKVVVNLNDA----------GLALQLFKKLKE--ENDEGLSA 266 (963)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHS--SSCC----HHHHHHHHHHHTCH----------HHHHHHHHHHHT--TCCHHHHH
T ss_pred ---CCChHHHHHHHHHHHHHHHhC--Cchh----HHHHHHHHHHcCCH----------HHHHHHHHHHHh--cccHHHHH
Confidence 222111133455555666541 1233 45567888889996 999999999874 45666666
Q ss_pred HHHHHHHHh
Q 017806 300 NLGTVLYGL 308 (365)
Q Consensus 300 ~lg~~~~~~ 308 (365)
.++..+...
T Consensus 267 QiAFdL~~~ 275 (963)
T 4ady_A 267 QIAFDLVSS 275 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 676666654
No 318
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.68 E-value=87 Score=21.12 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
...+|.=|...|+ |+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~Gn--------------Ydta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGN--------------YDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTC--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--------------hHHHHHHHHHHHHH
Confidence 3567777888899 99999999999863
No 319
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=22.34 E-value=3.6e+02 Score=22.82 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH---------------
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRA--------------- 220 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~--------------- 220 (365)
+.+-+..++.+..+.++ |++.+.+.+++++.++. +.+=.+.|..+|-...
T Consensus 30 ~re~lv~~AKLaeqaeR--------------YddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieq 95 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAER--------------YDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 95 (261)
T ss_dssp CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHH
Confidence 34556788899999999 99999999999998876 4444555555553311
Q ss_pred Hh--cCCHH--HHHHHHHH------------HHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 221 KM--RGRTK--EAEELWKQ------------ATKNYEKAVQLNWNSP----QALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 221 ~~--~g~~~--~A~~~~~~------------A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
+. .|.-. ..++.|.+ .+..+.+-+--...+. -.+-..|..|..+..+.....+..-.+.|
T Consensus 96 kee~~g~~~~~~~i~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a 175 (261)
T 3ubw_A 96 KEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENS 175 (261)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHH
Confidence 11 12211 11111111 1222222221112222 22345788888777765555566667888
Q ss_pred HHHHHHHHH-----hCCCCHH---HHHHHHHHHHH
Q 017806 281 ISKFRAAIQ-----LQFDFHR---AIYNLGTVLYG 307 (365)
Q Consensus 281 ~~~~~~al~-----~~p~~~~---~~~~lg~~~~~ 307 (365)
...|++|++ +.|.+|- ...|.+..|+.
T Consensus 176 ~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYE 210 (261)
T 3ubw_A 176 LVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYE 210 (261)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Confidence 888888875 4677763 33444444444
Done!