Query 017808
Match_columns 365
No_of_seqs 267 out of 2046
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:36:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02268 probable polyamine ox 100.0 1.8E-48 3.9E-53 374.9 38.5 334 3-336 101-434 (435)
2 PLN02976 amine oxidase 100.0 4.7E-47 1E-51 385.0 36.6 336 2-337 791-1187(1713)
3 PLN03000 amine oxidase 100.0 1.6E-46 3.5E-51 372.7 34.8 335 2-338 276-625 (881)
4 PLN02529 lysine-specific histo 100.0 5.2E-45 1.1E-49 361.1 35.9 334 2-337 252-599 (738)
5 PLN02328 lysine-specific histo 100.0 3.4E-44 7.3E-49 356.6 34.1 337 2-340 330-683 (808)
6 PLN02568 polyamine oxidase 100.0 2.9E-42 6.2E-47 335.5 34.8 333 2-336 106-535 (539)
7 PLN02676 polyamine oxidase 100.0 4.3E-42 9.4E-47 332.0 35.6 327 2-337 121-474 (487)
8 KOG0685 Flavin-containing amin 100.0 4.7E-43 1E-47 319.5 24.3 334 2-338 115-493 (498)
9 KOG0029 Amine oxidase [Seconda 100.0 6E-37 1.3E-41 293.3 29.7 283 56-338 170-461 (501)
10 COG1231 Monoamine oxidase [Ami 100.0 4.9E-34 1.1E-38 261.0 19.7 239 97-337 203-448 (450)
11 PF01593 Amino_oxidase: Flavin 100.0 5.7E-30 1.2E-34 245.8 22.2 234 98-333 207-450 (450)
12 TIGR03467 HpnE squalene-associ 100.0 4.9E-28 1.1E-32 232.0 24.8 275 33-334 128-419 (419)
13 TIGR00562 proto_IX_ox protopor 100.0 5.4E-28 1.2E-32 234.7 25.2 279 33-336 134-460 (462)
14 PRK12416 protoporphyrinogen ox 100.0 1.6E-27 3.5E-32 231.2 26.4 278 33-336 143-461 (463)
15 PLN02576 protoporphyrinogen ox 100.0 1.8E-26 3.8E-31 225.9 24.3 280 33-337 143-488 (496)
16 PRK11883 protoporphyrinogen ox 99.9 7.2E-26 1.6E-30 219.2 26.7 275 33-334 138-450 (451)
17 TIGR02731 phytoene_desat phyto 99.9 2.3E-25 5E-30 215.6 23.3 278 34-333 146-453 (453)
18 PLN02612 phytoene desaturase 99.9 4E-25 8.7E-30 217.8 23.6 283 34-336 241-548 (567)
19 PRK07233 hypothetical protein; 99.9 3.5E-24 7.6E-29 206.3 20.5 278 34-337 130-432 (434)
20 COG1232 HemY Protoporphyrinoge 99.9 2.5E-23 5.5E-28 195.2 23.2 277 31-333 130-443 (444)
21 PLN02487 zeta-carotene desatur 99.9 3.4E-21 7.3E-26 188.2 23.1 281 33-336 227-553 (569)
22 PRK07208 hypothetical protein; 99.9 8.5E-21 1.8E-25 185.0 23.9 280 33-335 130-460 (479)
23 TIGR02732 zeta_caro_desat caro 99.9 5.4E-21 1.2E-25 185.1 21.1 277 34-333 152-474 (474)
24 TIGR02733 desat_CrtD C-3',4' d 99.8 6E-18 1.3E-22 165.5 24.4 258 72-334 198-490 (492)
25 COG3380 Predicted NAD/FAD-depe 99.8 3E-19 6.6E-24 152.5 11.9 223 96-335 101-330 (331)
26 KOG1276 Protoporphyrinogen oxi 99.7 1.4E-16 3E-21 144.4 19.3 279 31-333 151-490 (491)
27 TIGR02734 crtI_fam phytoene de 99.7 1E-16 2.2E-21 157.3 18.1 260 70-335 185-491 (502)
28 TIGR02730 carot_isom carotene 99.7 2E-15 4.4E-20 147.6 23.6 259 73-335 196-491 (493)
29 KOG4254 Phytoene desaturase [C 99.1 1.4E-09 3E-14 99.9 14.9 236 92-335 253-545 (561)
30 COG1233 Phytoene dehydrogenase 99.1 6.1E-10 1.3E-14 108.5 12.4 80 75-154 195-281 (487)
31 COG2907 Predicted NAD/FAD-bind 99.0 6E-09 1.3E-13 92.9 12.3 144 32-189 147-304 (447)
32 COG3349 Uncharacterized conser 98.6 2E-07 4.4E-12 88.2 10.7 253 73-339 177-466 (485)
33 PF07156 Prenylcys_lyase: Pren 98.6 3.1E-06 6.8E-11 78.9 16.2 97 56-154 80-187 (368)
34 PTZ00363 rab-GDP dissociation 98.0 0.00011 2.3E-09 70.7 12.8 57 95-151 224-287 (443)
35 TIGR00031 UDP-GALP_mutase UDP- 97.7 0.00095 2.1E-08 62.8 14.4 97 56-156 141-249 (377)
36 TIGR01984 UbiH 2-polyprenyl-6- 97.5 0.015 3.3E-07 55.0 19.3 42 112-153 120-161 (382)
37 TIGR01988 Ubi-OHases Ubiquinon 97.4 0.017 3.7E-07 54.6 18.5 41 113-153 122-162 (385)
38 PRK05732 2-octaprenyl-6-methox 97.1 0.056 1.2E-06 51.3 18.4 50 104-153 117-168 (395)
39 PRK09126 hypothetical protein; 97.1 0.061 1.3E-06 51.1 18.6 49 105-153 116-166 (392)
40 PRK07333 2-octaprenyl-6-methox 97.1 0.087 1.9E-06 50.2 19.6 42 112-153 125-166 (403)
41 PRK07494 2-octaprenyl-6-methox 97.0 0.08 1.7E-06 50.2 18.4 186 115-334 128-316 (388)
42 PRK08850 2-octaprenyl-6-methox 97.0 0.1 2.2E-06 49.9 19.0 50 104-153 116-167 (405)
43 PRK08773 2-octaprenyl-3-methyl 97.0 0.15 3.3E-06 48.4 19.9 42 112-153 127-168 (392)
44 PRK08020 ubiF 2-octaprenyl-3-m 96.9 0.14 3.1E-06 48.6 19.4 52 103-154 116-169 (391)
45 PRK05714 2-octaprenyl-3-methyl 96.9 0.19 4.1E-06 48.0 20.1 51 104-154 117-168 (405)
46 PRK08849 2-octaprenyl-3-methyl 96.8 0.15 3.3E-06 48.3 18.3 50 105-154 116-167 (384)
47 COG0654 UbiH 2-polyprenyl-6-me 96.7 0.24 5.1E-06 47.1 18.7 193 113-336 120-316 (387)
48 PRK08013 oxidoreductase; Provi 96.6 0.4 8.7E-06 45.7 20.2 50 104-153 116-167 (400)
49 PRK07364 2-octaprenyl-6-methox 96.6 0.26 5.7E-06 47.1 18.9 42 112-153 136-180 (415)
50 TIGR02032 GG-red-SF geranylger 96.5 0.25 5.3E-06 44.6 17.0 50 104-153 96-147 (295)
51 TIGR02352 thiamin_ThiO glycine 96.5 0.22 4.8E-06 46.0 16.7 51 103-154 137-193 (337)
52 COG2081 Predicted flavoprotein 96.4 0.0093 2E-07 55.3 7.1 52 100-151 108-164 (408)
53 PF13738 Pyr_redox_3: Pyridine 96.4 0.0059 1.3E-07 52.1 5.6 41 112-152 96-136 (203)
54 PRK07608 ubiquinone biosynthes 96.3 0.57 1.2E-05 44.3 19.1 49 104-153 116-166 (388)
55 PRK10015 oxidoreductase; Provi 96.3 0.37 8.1E-06 46.5 17.7 43 112-154 122-164 (429)
56 PRK10157 putative oxidoreducta 96.1 0.28 6.1E-06 47.3 15.9 42 112-153 122-163 (428)
57 PF05834 Lycopene_cycl: Lycope 96.1 0.97 2.1E-05 42.7 19.1 51 103-153 91-141 (374)
58 PRK11259 solA N-methyltryptoph 96.1 0.63 1.4E-05 43.8 17.9 42 112-154 163-204 (376)
59 PRK06996 hypothetical protein; 96.0 0.79 1.7E-05 43.7 18.0 48 104-151 120-171 (398)
60 PF01266 DAO: FAD dependent ox 95.8 0.019 4.1E-07 53.4 6.0 57 97-154 138-203 (358)
61 PF13454 NAD_binding_9: FAD-NA 95.8 0.029 6.4E-07 45.9 6.3 50 102-151 104-154 (156)
62 TIGR03197 MnmC_Cterm tRNA U-34 95.4 0.033 7.2E-07 52.7 6.0 52 103-154 135-190 (381)
63 PRK07045 putative monooxygenas 95.2 1.6 3.4E-05 41.4 17.0 43 112-154 121-165 (388)
64 TIGR01989 COQ6 Ubiquinone bios 95.2 3.3 7.1E-05 40.0 19.3 52 103-154 121-183 (437)
65 PRK06185 hypothetical protein; 94.9 3.6 7.7E-05 39.2 19.3 42 112-153 123-168 (407)
66 PF03486 HI0933_like: HI0933-l 94.8 0.065 1.4E-06 51.1 6.3 52 100-151 106-163 (409)
67 COG0579 Predicted dehydrogenas 94.4 0.12 2.5E-06 49.4 6.7 55 102-156 152-213 (429)
68 PRK07588 hypothetical protein; 94.0 0.12 2.7E-06 49.0 6.3 48 107-154 111-158 (391)
69 COG2509 Uncharacterized FAD-de 93.9 0.14 3E-06 48.5 6.1 41 112-152 187-228 (486)
70 TIGR01373 soxB sarcosine oxida 93.6 6.2 0.00013 37.6 17.2 42 112-154 197-240 (407)
71 PRK06617 2-octaprenyl-6-methox 93.5 6.8 0.00015 36.9 19.3 41 113-154 120-160 (374)
72 COG0644 FixC Dehydrogenases (f 93.3 5.5 0.00012 37.9 16.2 55 99-153 94-151 (396)
73 PRK07236 hypothetical protein; 93.3 0.26 5.5E-06 46.8 7.0 52 101-152 98-152 (386)
74 TIGR03219 salicylate_mono sali 93.2 0.23 5E-06 47.6 6.7 52 103-154 105-159 (414)
75 PTZ00383 malate:quinone oxidor 93.0 0.29 6.2E-06 48.1 6.9 42 113-155 232-274 (497)
76 PRK11728 hydroxyglutarate oxid 93.0 0.29 6.4E-06 46.5 6.9 51 103-154 149-204 (393)
77 PRK06847 hypothetical protein; 92.6 0.35 7.6E-06 45.5 6.9 42 112-153 121-162 (375)
78 PRK05868 hypothetical protein; 92.5 0.28 6.1E-06 46.3 6.1 44 111-154 117-160 (372)
79 PRK06452 sdhA succinate dehydr 92.4 7.1 0.00015 39.2 16.1 43 112-154 150-198 (566)
80 TIGR03862 flavo_PP4765 unchara 92.1 0.43 9.3E-06 45.0 6.6 52 99-152 82-139 (376)
81 PRK06753 hypothetical protein; 92.0 0.45 9.7E-06 44.8 6.8 52 103-154 98-152 (373)
82 TIGR01377 soxA_mon sarcosine o 91.9 0.47 1E-05 44.7 6.9 41 112-153 159-199 (380)
83 TIGR00275 flavoprotein, HI0933 91.8 0.8 1.7E-05 43.7 8.3 51 101-152 103-158 (400)
84 PF00996 GDI: GDP dissociation 91.6 2.4 5.1E-05 40.8 11.1 55 94-149 223-284 (438)
85 PRK06116 glutathione reductase 91.6 0.5 1.1E-05 45.9 6.7 41 112-152 222-263 (450)
86 COG0665 DadA Glycine/D-amino a 91.6 4.3 9.3E-05 38.2 13.1 40 114-154 173-212 (387)
87 PRK07846 mycothione reductase; 91.5 0.52 1.1E-05 45.8 6.8 42 111-152 219-260 (451)
88 TIGR03452 mycothione_red mycot 91.3 0.64 1.4E-05 45.2 7.1 43 110-152 221-263 (452)
89 PRK09897 hypothetical protein; 91.2 0.53 1.1E-05 46.6 6.5 40 113-152 124-164 (534)
90 PRK06834 hypothetical protein; 91.2 0.6 1.3E-05 45.8 6.9 42 112-153 114-155 (488)
91 PRK01747 mnmC bifunctional tRN 91.2 0.44 9.6E-06 48.7 6.2 52 103-154 408-463 (662)
92 TIGR03329 Phn_aa_oxid putative 91.1 0.54 1.2E-05 45.8 6.5 40 112-153 197-236 (460)
93 PLN02172 flavin-containing mon 91.1 0.64 1.4E-05 45.3 6.9 51 103-153 111-172 (461)
94 PRK00711 D-amino acid dehydrog 90.9 0.64 1.4E-05 44.4 6.8 42 112-154 215-257 (416)
95 PRK07190 hypothetical protein; 90.5 0.71 1.5E-05 45.3 6.7 43 112-154 123-165 (487)
96 PRK04965 NADH:flavorubredoxin 90.5 0.74 1.6E-05 43.5 6.7 41 112-152 197-237 (377)
97 PLN02507 glutathione reductase 90.5 0.79 1.7E-05 45.1 7.0 41 112-152 258-298 (499)
98 PF00070 Pyr_redox: Pyridine n 90.3 0.45 9.9E-06 33.8 3.9 35 104-138 45-80 (80)
99 PRK05249 soluble pyridine nucl 90.2 0.85 1.8E-05 44.4 6.9 41 112-152 230-270 (461)
100 PRK13339 malate:quinone oxidor 90.1 0.78 1.7E-05 45.0 6.5 53 102-154 187-247 (497)
101 PRK08163 salicylate hydroxylas 90.1 0.75 1.6E-05 43.7 6.4 51 104-154 114-166 (396)
102 PRK12409 D-amino acid dehydrog 90.0 0.81 1.8E-05 43.7 6.6 43 112-154 211-258 (410)
103 TIGR01424 gluta_reduc_2 glutat 89.9 0.93 2E-05 43.9 6.9 41 112-152 221-261 (446)
104 PRK07845 flavoprotein disulfid 89.6 0.99 2.1E-05 44.1 6.9 41 112-152 232-272 (466)
105 PRK06416 dihydrolipoamide dehy 89.5 0.9 2E-05 44.2 6.5 41 112-152 227-270 (462)
106 TIGR03378 glycerol3P_GlpB glyc 89.2 1.2 2.5E-05 42.6 6.7 50 104-153 268-321 (419)
107 PRK09754 phenylpropionate diox 89.1 1.1 2.3E-05 42.7 6.6 40 112-152 200-239 (396)
108 PRK05257 malate:quinone oxidor 89.1 0.96 2.1E-05 44.5 6.4 52 103-154 187-246 (494)
109 TIGR01350 lipoamide_DH dihydro 89.1 1.1 2.4E-05 43.5 6.9 41 112-152 225-267 (461)
110 PLN02927 antheraxanthin epoxid 89.0 1.2 2.6E-05 45.2 7.0 52 103-154 194-248 (668)
111 PRK08294 phenol 2-monooxygenas 88.7 30 0.00066 35.3 17.8 50 105-154 147-210 (634)
112 TIGR01292 TRX_reduct thioredox 88.6 1.4 3E-05 39.8 6.7 41 112-153 71-111 (300)
113 PF06039 Mqo: Malate:quinone o 88.4 1.3 2.8E-05 42.5 6.4 55 102-156 180-246 (488)
114 PRK13977 myosin-cross-reactive 88.2 3.5 7.7E-05 41.0 9.5 34 301-334 487-522 (576)
115 COG1249 Lpd Pyruvate/2-oxoglut 87.1 1.5 3.3E-05 42.4 6.2 46 106-151 221-269 (454)
116 PRK06184 hypothetical protein; 87.1 1.5 3.3E-05 43.2 6.4 50 105-154 115-168 (502)
117 TIGR03140 AhpF alkyl hydropero 86.5 2.1 4.5E-05 42.4 7.0 42 112-153 281-322 (515)
118 PRK05329 anaerobic glycerol-3- 86.3 2.3 4.9E-05 40.9 6.9 41 112-152 273-316 (422)
119 PLN02463 lycopene beta cyclase 86.3 1.9 4.2E-05 41.7 6.5 41 112-153 128-168 (447)
120 TIGR02485 CobZ_N-term precorri 86.3 2.5 5.4E-05 40.8 7.3 55 98-152 118-181 (432)
121 TIGR01320 mal_quin_oxido malat 86.1 1.9 4.1E-05 42.3 6.4 52 103-154 178-240 (483)
122 PRK08010 pyridine nucleotide-d 85.8 2.2 4.9E-05 41.2 6.7 40 112-152 213-252 (441)
123 KOG2820 FAD-dependent oxidored 85.7 2.1 4.5E-05 39.3 5.8 45 112-156 167-214 (399)
124 TIGR01421 gluta_reduc_1 glutat 85.7 2.4 5.1E-05 41.2 6.8 41 112-152 221-263 (450)
125 PRK15317 alkyl hydroperoxide r 85.6 2.4 5.2E-05 42.0 7.0 42 112-153 280-321 (517)
126 TIGR03364 HpnW_proposed FAD de 85.5 1.7 3.8E-05 40.7 5.7 47 103-154 149-197 (365)
127 PRK14727 putative mercuric red 85.1 2.6 5.7E-05 41.3 6.9 41 112-153 242-282 (479)
128 PRK06327 dihydrolipoamide dehy 84.8 2.4 5.3E-05 41.4 6.5 41 112-152 238-282 (475)
129 TIGR01423 trypano_reduc trypan 84.8 2.7 5.9E-05 41.3 6.8 41 112-152 245-286 (486)
130 PRK07818 dihydrolipoamide dehy 84.7 2.5 5.4E-05 41.2 6.6 41 112-152 227-271 (466)
131 PTZ00052 thioredoxin reductase 84.7 2.8 6E-05 41.4 6.9 41 112-152 236-276 (499)
132 PF00743 FMO-like: Flavin-bind 84.6 2.8 6.1E-05 41.6 6.8 52 103-154 84-150 (531)
133 PRK06183 mhpA 3-(3-hydroxyphen 84.5 2.2 4.8E-05 42.5 6.2 43 112-154 128-174 (538)
134 PRK11445 putative oxidoreducta 83.8 3.4 7.4E-05 38.6 6.8 44 110-153 110-156 (351)
135 PRK07251 pyridine nucleotide-d 83.0 3.5 7.7E-05 39.8 6.8 40 112-152 212-251 (438)
136 PRK06475 salicylate hydroxylas 83.0 3.3 7.1E-05 39.4 6.5 43 112-154 122-167 (400)
137 TIGR02374 nitri_red_nirB nitri 82.6 3.1 6.8E-05 43.5 6.6 41 112-152 196-236 (785)
138 PRK14694 putative mercuric red 82.3 3.8 8.2E-05 40.0 6.7 40 112-152 232-271 (468)
139 PF13434 K_oxygenase: L-lysine 81.9 2.5 5.4E-05 39.4 5.0 39 113-151 294-338 (341)
140 TIGR03862 flavo_PP4765 unchara 81.6 1.9 4.1E-05 40.7 4.1 39 297-335 333-374 (376)
141 PRK12831 putative oxidoreducta 81.4 1.8 3.8E-05 42.3 4.0 41 296-338 422-462 (464)
142 PRK12266 glpD glycerol-3-phosp 81.3 3.6 7.9E-05 40.6 6.2 44 111-154 168-216 (508)
143 PF01134 GIDA: Glucose inhibit 80.8 5.2 0.00011 37.9 6.7 52 100-152 95-150 (392)
144 PRK06370 mercuric reductase; V 80.6 4.9 0.00011 39.1 6.8 41 112-152 226-269 (463)
145 TIGR01438 TGR thioredoxin and 80.4 4.9 0.00011 39.5 6.7 41 112-152 234-277 (484)
146 PRK13748 putative mercuric red 80.2 4.7 0.0001 40.3 6.7 40 112-152 324-363 (561)
147 TIGR01813 flavo_cyto_c flavocy 80.0 5.1 0.00011 38.6 6.7 42 112-153 144-191 (439)
148 PRK06467 dihydrolipoamide dehy 79.7 5 0.00011 39.2 6.6 46 107-152 223-272 (471)
149 PRK12775 putative trifunctiona 79.1 3.6 7.8E-05 44.2 5.7 41 296-338 716-756 (1006)
150 PRK13369 glycerol-3-phosphate 79.1 4.7 0.0001 39.7 6.2 44 111-154 168-215 (502)
151 TIGR02053 MerA mercuric reduct 79.0 5.6 0.00012 38.7 6.6 41 112-152 221-264 (463)
152 COG0562 Glf UDP-galactopyranos 78.6 7.7 0.00017 35.5 6.7 91 56-156 141-243 (374)
153 PRK08244 hypothetical protein; 78.6 5.6 0.00012 39.1 6.6 42 112-153 114-158 (493)
154 PTZ00318 NADH dehydrogenase-li 78.5 5.1 0.00011 38.6 6.1 37 112-152 242-278 (424)
155 TIGR03385 CoA_CoA_reduc CoA-di 78.3 5.6 0.00012 38.2 6.4 39 112-152 193-231 (427)
156 PRK06115 dihydrolipoamide dehy 78.2 5.7 0.00012 38.8 6.4 41 112-152 229-274 (466)
157 PRK06481 fumarate reductase fl 78.2 6.8 0.00015 38.7 7.0 40 112-151 204-248 (506)
158 KOG1346 Programmed cell death 78.1 1.8 3.9E-05 40.7 2.7 41 112-152 407-447 (659)
159 TIGR03169 Nterm_to_SelD pyridi 78.0 4.8 0.0001 37.7 5.7 37 112-152 205-241 (364)
160 PRK06175 L-aspartate oxidase; 77.6 6.6 0.00014 37.9 6.6 50 103-152 132-187 (433)
161 TIGR01790 carotene-cycl lycope 77.6 7.2 0.00016 36.8 6.8 42 112-154 99-141 (388)
162 PRK06126 hypothetical protein; 77.5 5.2 0.00011 39.9 6.0 43 112-154 141-188 (545)
163 PF00890 FAD_binding_2: FAD bi 77.5 5.2 0.00011 38.2 5.9 53 101-153 139-202 (417)
164 PRK14989 nitrite reductase sub 77.1 6.6 0.00014 41.4 6.8 41 112-152 201-243 (847)
165 PRK06912 acoL dihydrolipoamide 76.8 7.9 0.00017 37.7 7.0 40 112-152 225-266 (458)
166 PRK09564 coenzyme A disulfide 76.7 7.2 0.00016 37.6 6.7 40 112-152 205-244 (444)
167 PRK08274 tricarballylate dehyd 74.9 7.9 0.00017 37.7 6.4 54 99-152 127-190 (466)
168 PRK07538 hypothetical protein; 74.7 7.1 0.00015 37.3 6.0 41 114-154 120-165 (413)
169 PRK05976 dihydrolipoamide dehy 74.6 9.7 0.00021 37.2 7.0 42 112-153 235-280 (472)
170 TIGR03377 glycerol3P_GlpA glyc 74.3 7.6 0.00016 38.4 6.2 43 112-154 142-190 (516)
171 PRK04176 ribulose-1,5-biphosph 73.4 4.2 9.1E-05 36.2 3.7 38 300-337 213-255 (257)
172 PF01494 FAD_binding_3: FAD bi 73.3 6.9 0.00015 36.0 5.4 43 112-154 125-172 (356)
173 PRK06134 putative FAD-binding 73.2 9.9 0.00021 38.3 6.7 42 112-153 231-277 (581)
174 PF13434 K_oxygenase: L-lysine 72.8 4 8.6E-05 38.1 3.6 46 106-151 101-156 (341)
175 PRK06292 dihydrolipoamide dehy 72.8 10 0.00023 36.8 6.7 41 112-152 223-266 (460)
176 PRK11101 glpA sn-glycerol-3-ph 72.7 9.2 0.0002 38.2 6.3 43 112-154 163-211 (546)
177 COG2072 TrkA Predicted flavopr 72.5 8 0.00017 37.5 5.7 39 114-152 100-142 (443)
178 PRK08132 FAD-dependent oxidore 72.4 10 0.00022 37.9 6.6 50 105-154 131-185 (547)
179 PRK13512 coenzyme A disulfide 72.3 9.2 0.0002 37.0 6.1 44 105-152 195-239 (438)
180 COG1635 THI4 Ribulose 1,5-bisp 72.2 4.2 9.1E-05 35.1 3.2 38 300-337 218-260 (262)
181 PRK12845 3-ketosteroid-delta-1 72.1 11 0.00023 37.9 6.6 54 98-152 213-276 (564)
182 TIGR03385 CoA_CoA_reduc CoA-di 72.0 7.6 0.00017 37.3 5.5 41 112-152 58-101 (427)
183 PRK09754 phenylpropionate diox 71.7 7 0.00015 37.2 5.1 41 111-153 71-111 (396)
184 TIGR00292 thiazole biosynthesi 71.4 5.6 0.00012 35.4 4.1 37 300-336 212-253 (254)
185 PLN02697 lycopene epsilon cycl 71.4 11 0.00023 37.5 6.4 42 112-154 206-248 (529)
186 COG1252 Ndh NADH dehydrogenase 71.3 8 0.00017 36.8 5.2 43 107-153 217-261 (405)
187 PRK12809 putative oxidoreducta 71.2 6.3 0.00014 40.2 4.9 42 296-339 596-637 (639)
188 PRK12810 gltD glutamate syntha 71.1 6.3 0.00014 38.5 4.7 40 296-337 426-465 (471)
189 PF00732 GMC_oxred_N: GMC oxid 70.9 7.3 0.00016 35.2 4.9 48 105-152 199-256 (296)
190 TIGR01316 gltA glutamate synth 70.4 5.3 0.00011 38.8 4.0 38 296-335 411-448 (449)
191 PRK08071 L-aspartate oxidase; 69.8 8.4 0.00018 38.1 5.3 46 107-152 138-188 (510)
192 PRK08243 4-hydroxybenzoate 3-m 69.8 11 0.00024 35.7 6.0 43 112-154 117-163 (392)
193 PRK12769 putative oxidoreducta 69.7 6.7 0.00015 40.1 4.7 40 296-337 613-652 (654)
194 KOG2404 Fumarate reductase, fl 69.6 9 0.0002 35.1 4.8 40 113-152 160-204 (477)
195 PRK09564 coenzyme A disulfide 69.1 9.8 0.00021 36.7 5.6 42 112-153 70-114 (444)
196 PTZ00058 glutathione reductase 69.0 14 0.00031 37.0 6.7 40 112-151 292-333 (561)
197 COG0492 TrxB Thioredoxin reduc 68.7 13 0.00028 34.1 5.9 42 296-338 261-302 (305)
198 TIGR01789 lycopene_cycl lycope 68.3 10 0.00023 35.7 5.4 47 103-153 89-137 (370)
199 PRK12842 putative succinate de 67.9 15 0.00032 37.0 6.7 41 297-337 521-568 (574)
200 PF03275 GLF: UDP-galactopyran 67.7 0.96 2.1E-05 38.5 -1.5 78 69-156 7-95 (204)
201 TIGR02374 nitri_red_nirB nitri 66.9 8.7 0.00019 40.2 5.0 40 112-153 68-107 (785)
202 PRK11749 dihydropyrimidine deh 66.7 8.6 0.00019 37.4 4.6 40 297-338 414-453 (457)
203 PRK12843 putative FAD-binding 66.5 16 0.00034 36.8 6.6 41 297-337 526-573 (578)
204 TIGR00551 nadB L-aspartate oxi 65.3 14 0.00031 36.2 5.9 51 104-154 133-189 (488)
205 TIGR01816 sdhA_forward succina 64.9 9.2 0.0002 38.4 4.5 42 112-153 133-180 (565)
206 KOG2614 Kynurenine 3-monooxyge 64.2 76 0.0017 30.2 9.9 39 114-152 117-161 (420)
207 PRK10262 thioredoxin reductase 64.1 14 0.00031 33.8 5.4 41 112-152 199-246 (321)
208 TIGR01292 TRX_reduct thioredox 63.9 6.8 0.00015 35.2 3.2 37 298-335 263-299 (300)
209 KOG1335 Dihydrolipoamide dehyd 63.7 18 0.00039 34.1 5.6 41 112-152 266-312 (506)
210 PRK09078 sdhA succinate dehydr 63.4 10 0.00023 38.3 4.6 39 298-336 383-428 (598)
211 TIGR01318 gltD_gamma_fam gluta 63.3 12 0.00025 36.6 4.8 38 297-336 428-465 (467)
212 TIGR01317 GOGAT_sm_gam glutama 63.3 9.7 0.00021 37.4 4.3 40 296-337 440-479 (485)
213 COG2081 Predicted flavoprotein 62.8 8.2 0.00018 36.3 3.4 39 297-335 365-406 (408)
214 PRK05192 tRNA uridine 5-carbox 62.8 20 0.00044 36.1 6.4 41 112-153 115-156 (618)
215 PRK12771 putative glutamate sy 62.8 11 0.00023 37.8 4.6 40 297-338 406-445 (564)
216 PLN02546 glutathione reductase 62.6 22 0.00047 35.7 6.6 41 112-152 307-348 (558)
217 KOG1439 RAB proteins geranylge 62.4 20 0.00042 33.9 5.7 56 95-150 224-285 (440)
218 PRK12770 putative glutamate sy 62.2 13 0.00029 34.6 4.8 38 298-337 313-350 (352)
219 PRK07843 3-ketosteroid-delta-1 62.0 22 0.00049 35.6 6.7 38 297-334 511-555 (557)
220 TIGR03140 AhpF alkyl hydropero 61.9 17 0.00038 35.9 5.8 47 106-152 394-448 (515)
221 PRK07573 sdhA succinate dehydr 61.8 22 0.00048 36.3 6.6 41 112-152 184-230 (640)
222 PLN02661 Putative thiazole syn 61.7 11 0.00024 35.2 4.0 39 300-338 286-329 (357)
223 KOG1399 Flavin-containing mono 61.6 21 0.00045 34.6 6.1 51 103-153 90-152 (448)
224 PRK04965 NADH:flavorubredoxin 61.6 13 0.00029 34.9 4.8 39 112-153 72-110 (377)
225 PRK13512 coenzyme A disulfide 61.3 14 0.00031 35.7 5.0 42 112-153 72-116 (438)
226 PF07992 Pyr_redox_2: Pyridine 61.0 8.7 0.00019 32.2 3.1 50 104-153 63-121 (201)
227 COG0578 GlpA Glycerol-3-phosph 60.9 1.8E+02 0.0039 28.9 17.1 49 107-155 173-226 (532)
228 PRK12778 putative bifunctional 60.7 11 0.00023 39.4 4.2 39 297-337 712-750 (752)
229 PF03486 HI0933_like: HI0933-l 60.0 8.7 0.00019 36.8 3.2 33 298-330 373-408 (409)
230 TIGR02028 ChlP geranylgeranyl 60.0 14 0.00031 35.2 4.6 36 301-336 270-308 (398)
231 TIGR03169 Nterm_to_SelD pyridi 59.6 11 0.00024 35.2 3.9 40 112-154 68-107 (364)
232 PRK12842 putative succinate de 59.5 10 0.00022 38.2 3.7 51 103-153 214-274 (574)
233 PRK12779 putative bifunctional 59.4 12 0.00027 39.9 4.5 39 297-337 589-627 (944)
234 TIGR03143 AhpF_homolog putativ 59.2 15 0.00032 36.8 4.8 44 297-341 270-313 (555)
235 PRK12834 putative FAD-binding 59.2 27 0.00058 34.9 6.7 38 297-334 501-548 (549)
236 PRK08205 sdhA succinate dehydr 59.2 14 0.00031 37.1 4.8 40 297-336 372-418 (583)
237 PRK05945 sdhA succinate dehydr 58.9 27 0.00058 35.1 6.6 42 112-153 149-196 (575)
238 PLN00128 Succinate dehydrogena 58.6 15 0.00031 37.5 4.7 39 298-336 421-466 (635)
239 PRK12814 putative NADPH-depend 58.3 15 0.00032 37.7 4.7 41 296-338 462-502 (652)
240 PRK07512 L-aspartate oxidase; 58.1 18 0.00039 35.8 5.2 42 112-153 151-196 (513)
241 PRK07121 hypothetical protein; 57.9 33 0.00072 33.7 7.0 51 102-152 176-237 (492)
242 TIGR01812 sdhA_frdA_Gneg succi 57.5 31 0.00067 34.6 6.8 42 112-153 143-190 (566)
243 PRK14989 nitrite reductase sub 57.4 16 0.00036 38.5 4.9 40 112-153 73-112 (847)
244 PRK05335 tRNA (uracil-5-)-meth 56.8 16 0.00035 35.1 4.3 36 299-337 329-364 (436)
245 TIGR00292 thiazole biosynthesi 56.1 44 0.00094 29.7 6.8 42 112-153 114-169 (254)
246 PTZ00153 lipoamide dehydrogena 56.1 30 0.00066 35.4 6.4 43 111-153 367-426 (659)
247 PTZ00139 Succinate dehydrogena 55.6 15 0.00033 37.3 4.3 39 298-336 400-445 (617)
248 PLN02464 glycerol-3-phosphate 55.3 2.5E+02 0.0053 28.7 20.4 43 112-154 246-296 (627)
249 PRK08401 L-aspartate oxidase; 55.3 31 0.00067 33.7 6.2 49 104-154 121-175 (466)
250 PRK12837 3-ketosteroid-delta-1 55.2 33 0.00072 33.9 6.5 41 112-152 188-233 (513)
251 PRK06069 sdhA succinate dehydr 55.2 16 0.00035 36.8 4.3 51 103-153 141-199 (577)
252 KOG1336 Monodehydroascorbate/f 55.0 23 0.00049 34.2 4.9 43 112-154 269-313 (478)
253 PRK12844 3-ketosteroid-delta-1 54.8 32 0.0007 34.4 6.4 39 297-335 504-549 (557)
254 PRK04176 ribulose-1,5-biphosph 54.3 37 0.00081 30.2 6.1 42 112-153 118-172 (257)
255 PRK08958 sdhA succinate dehydr 54.1 19 0.00042 36.3 4.7 39 298-336 378-423 (588)
256 TIGR02360 pbenz_hydroxyl 4-hyd 53.3 33 0.00072 32.5 6.0 43 112-154 117-163 (390)
257 PRK13984 putative oxidoreducta 52.7 20 0.00043 36.3 4.6 39 296-337 564-602 (604)
258 TIGR02485 CobZ_N-term precorri 52.5 19 0.00041 34.7 4.2 39 297-335 384-429 (432)
259 TIGR01812 sdhA_frdA_Gneg succi 52.4 21 0.00045 35.8 4.6 40 298-337 357-403 (566)
260 TIGR01810 betA choline dehydro 52.1 21 0.00046 35.4 4.6 41 112-152 208-253 (532)
261 PLN00093 geranylgeranyl diphos 51.4 21 0.00046 34.6 4.4 37 300-336 308-347 (450)
262 PRK05675 sdhA succinate dehydr 51.2 23 0.0005 35.6 4.7 51 103-153 126-188 (570)
263 PRK06069 sdhA succinate dehydr 51.2 39 0.00084 34.0 6.3 40 298-337 369-415 (577)
264 TIGR02023 BchP-ChlP geranylger 51.0 24 0.00052 33.3 4.6 36 301-336 264-302 (388)
265 TIGR00275 flavoprotein, HI0933 50.8 12 0.00025 35.8 2.4 32 298-329 365-399 (400)
266 PRK09231 fumarate reductase fl 50.6 40 0.00088 34.0 6.3 41 112-152 148-194 (582)
267 TIGR01811 sdhA_Bsu succinate d 50.2 46 0.001 33.7 6.7 40 297-336 380-425 (603)
268 COG0446 HcaD Uncharacterized N 50.1 39 0.00084 31.8 5.9 41 112-152 192-235 (415)
269 PRK07804 L-aspartate oxidase; 50.1 38 0.00083 33.8 6.0 42 112-153 158-209 (541)
270 PRK12844 3-ketosteroid-delta-1 49.7 19 0.0004 36.1 3.8 42 112-153 222-268 (557)
271 PRK12839 hypothetical protein; 49.7 19 0.00041 36.2 3.8 39 297-335 522-567 (572)
272 PRK05945 sdhA succinate dehydr 49.6 25 0.00053 35.4 4.6 40 297-336 367-413 (575)
273 TIGR03315 Se_ygfK putative sel 49.6 19 0.00042 38.6 4.0 37 297-335 802-838 (1012)
274 PRK09231 fumarate reductase fl 49.4 24 0.00053 35.5 4.5 41 297-337 368-415 (582)
275 PRK09853 putative selenate red 49.3 21 0.00046 38.3 4.2 39 297-337 804-842 (1019)
276 TIGR01816 sdhA_forward succina 49.3 43 0.00094 33.6 6.3 39 298-336 351-396 (565)
277 PRK07843 3-ketosteroid-delta-1 49.2 19 0.00041 36.1 3.7 41 112-152 222-267 (557)
278 PRK12835 3-ketosteroid-delta-1 49.2 49 0.0011 33.4 6.7 40 297-336 524-570 (584)
279 KOG1336 Monodehydroascorbate/f 49.2 27 0.00059 33.7 4.5 40 112-153 141-180 (478)
280 PRK08641 sdhA succinate dehydr 49.1 25 0.00054 35.5 4.6 41 297-337 365-411 (589)
281 PRK06263 sdhA succinate dehydr 49.1 24 0.00053 35.2 4.5 42 112-153 148-196 (543)
282 PRK06481 fumarate reductase fl 49.0 19 0.0004 35.6 3.6 40 297-336 458-503 (506)
283 PRK12839 hypothetical protein; 48.8 52 0.0011 33.1 6.7 41 112-152 228-274 (572)
284 PRK06134 putative FAD-binding 48.5 18 0.00039 36.5 3.4 40 297-336 525-571 (581)
285 PRK06175 L-aspartate oxidase; 48.5 27 0.00059 33.7 4.6 38 298-335 342-386 (433)
286 PRK08275 putative oxidoreducta 48.5 50 0.0011 33.0 6.6 40 296-336 365-404 (554)
287 PRK06263 sdhA succinate dehydr 48.2 41 0.00088 33.6 5.9 40 297-336 358-403 (543)
288 PRK07121 hypothetical protein; 48.2 21 0.00046 35.0 3.9 38 297-334 446-489 (492)
289 PRK12835 3-ketosteroid-delta-1 48.0 25 0.00054 35.5 4.3 41 112-152 227-273 (584)
290 PRK08205 sdhA succinate dehydr 47.9 52 0.0011 33.2 6.6 42 112-153 154-205 (583)
291 PRK12845 3-ketosteroid-delta-1 47.8 20 0.00043 36.0 3.6 38 297-334 519-563 (564)
292 PRK10262 thioredoxin reductase 47.7 14 0.0003 33.9 2.4 42 296-338 275-316 (321)
293 PRK09077 L-aspartate oxidase; 47.5 26 0.00057 34.9 4.4 40 297-336 363-409 (536)
294 TIGR02462 pyranose_ox pyranose 47.3 41 0.00089 33.5 5.7 43 112-154 228-279 (544)
295 PRK07803 sdhA succinate dehydr 47.1 46 0.001 33.9 6.2 40 113-152 166-211 (626)
296 PRK07803 sdhA succinate dehydr 47.0 16 0.00034 37.2 2.8 39 298-336 403-447 (626)
297 PRK12810 gltD glutamate syntha 46.9 45 0.00097 32.6 5.9 43 110-152 341-398 (471)
298 PRK06854 adenylylsulfate reduc 46.7 55 0.0012 33.2 6.6 44 295-338 390-433 (608)
299 COG3486 IucD Lysine/ornithine 46.7 29 0.00063 32.9 4.2 40 114-153 294-339 (436)
300 PRK09078 sdhA succinate dehydr 46.0 58 0.0013 33.0 6.6 42 112-153 163-211 (598)
301 PRK12843 putative FAD-binding 46.0 24 0.00052 35.5 3.9 42 112-153 235-281 (578)
302 PRK07512 L-aspartate oxidase; 45.7 31 0.00068 34.1 4.6 39 298-336 352-397 (513)
303 COG1251 NirB NAD(P)H-nitrite r 45.7 18 0.0004 36.9 2.9 41 112-152 201-241 (793)
304 PRK08274 tricarballylate dehyd 45.4 27 0.00058 34.0 4.1 39 298-336 416-461 (466)
305 PRK12834 putative FAD-binding 45.3 24 0.00052 35.3 3.8 41 112-152 166-225 (549)
306 PTZ00318 NADH dehydrogenase-li 45.1 30 0.00065 33.3 4.3 40 298-337 306-348 (424)
307 PRK07057 sdhA succinate dehydr 44.8 29 0.00063 35.1 4.3 39 298-336 381-426 (591)
308 TIGR00551 nadB L-aspartate oxi 44.6 31 0.00068 33.8 4.4 39 297-335 343-388 (488)
309 PRK08626 fumarate reductase fl 44.4 60 0.0013 33.3 6.5 42 112-153 172-219 (657)
310 TIGR00136 gidA glucose-inhibit 43.4 72 0.0016 32.3 6.6 41 113-154 112-154 (617)
311 TIGR01176 fum_red_Fp fumarate 43.2 31 0.00068 34.7 4.2 41 112-152 147-193 (580)
312 PRK12814 putative NADPH-depend 43.0 67 0.0014 32.9 6.6 49 104-152 367-435 (652)
313 KOG0405 Pyridine nucleotide-di 42.9 47 0.001 31.0 4.8 54 99-152 225-285 (478)
314 PRK06116 glutathione reductase 42.9 31 0.00067 33.4 4.1 37 296-334 291-327 (450)
315 TIGR00136 gidA glucose-inhibit 42.7 35 0.00076 34.5 4.4 41 294-337 350-391 (617)
316 PF04820 Trp_halogenase: Trypt 42.6 55 0.0012 31.9 5.7 54 100-154 154-211 (454)
317 TIGR02023 BchP-ChlP geranylger 42.5 57 0.0012 30.8 5.8 41 112-153 106-154 (388)
318 PRK13984 putative oxidoreducta 42.2 57 0.0012 33.0 6.0 50 103-152 467-536 (604)
319 TIGR01421 gluta_reduc_1 glutat 42.2 33 0.00072 33.3 4.1 36 296-333 291-326 (450)
320 PRK12837 3-ketosteroid-delta-1 42.1 21 0.00047 35.3 2.8 38 297-334 466-510 (513)
321 PRK15458 tagatose 6-phosphate 42.1 65 0.0014 30.7 5.7 80 262-345 42-126 (426)
322 COG1251 NirB NAD(P)H-nitrite r 41.9 33 0.00072 35.1 4.0 40 112-153 73-112 (793)
323 PTZ00306 NADH-dependent fumara 41.9 68 0.0015 35.4 6.8 42 298-339 858-905 (1167)
324 COG1252 Ndh NADH dehydrogenase 41.6 50 0.0011 31.5 5.0 39 300-338 291-333 (405)
325 KOG2844 Dimethylglycine dehydr 41.5 45 0.00097 33.9 4.7 84 70-154 145-243 (856)
326 PF12831 FAD_oxidored: FAD dep 41.4 8.8 0.00019 37.0 0.0 56 102-157 92-153 (428)
327 PRK11749 dihydropyrimidine deh 41.3 53 0.0012 31.9 5.4 42 111-152 324-385 (457)
328 PRK15052 D-tagatose-1,6-bispho 41.1 70 0.0015 30.5 5.8 80 262-345 39-123 (421)
329 TIGR01176 fum_red_Fp fumarate 40.8 74 0.0016 32.1 6.5 40 297-336 367-413 (580)
330 PRK15317 alkyl hydroperoxide r 40.7 24 0.00052 34.9 3.0 43 296-339 472-514 (517)
331 PRK08071 L-aspartate oxidase; 40.6 39 0.00084 33.5 4.4 39 297-335 342-387 (510)
332 TIGR01424 gluta_reduc_2 glutat 39.8 36 0.00078 32.9 4.0 37 296-334 289-325 (446)
333 TIGR02810 agaZ_gatZ D-tagatose 39.3 79 0.0017 30.1 5.8 80 262-345 38-122 (420)
334 PRK14727 putative mercuric red 37.9 36 0.00079 33.3 3.7 37 296-334 309-345 (479)
335 PF01134 GIDA: Glucose inhibit 37.8 35 0.00075 32.4 3.3 35 300-337 355-389 (392)
336 PTZ00139 Succinate dehydrogena 37.6 98 0.0021 31.5 6.8 41 112-152 180-227 (617)
337 KOG1346 Programmed cell death 37.5 47 0.001 31.7 4.0 49 103-153 262-310 (659)
338 TIGR01811 sdhA_Bsu succinate d 37.3 53 0.0011 33.3 4.8 41 112-152 147-194 (603)
339 COG2509 Uncharacterized FAD-de 37.0 37 0.00079 32.7 3.3 39 296-336 445-483 (486)
340 COG0445 GidA Flavin-dependent 36.8 20 0.00044 35.3 1.6 38 117-154 119-158 (621)
341 PRK02106 choline dehydrogenase 36.7 57 0.0012 32.7 4.9 41 112-152 215-260 (560)
342 TIGR03143 AhpF_homolog putativ 36.5 94 0.002 31.1 6.4 40 112-153 74-113 (555)
343 PRK12770 putative glutamate sy 36.4 79 0.0017 29.4 5.6 49 104-152 215-284 (352)
344 PRK07395 L-aspartate oxidase; 36.0 61 0.0013 32.5 5.0 41 112-152 149-195 (553)
345 PRK11445 putative oxidoreducta 35.9 51 0.0011 30.6 4.2 35 301-335 264-301 (351)
346 TIGR01423 trypano_reduc trypan 35.9 46 0.001 32.7 4.0 37 296-334 314-350 (486)
347 PRK13748 putative mercuric red 35.2 42 0.0009 33.6 3.7 36 296-333 391-426 (561)
348 PRK08401 L-aspartate oxidase; 35.1 54 0.0012 32.0 4.4 38 297-334 320-364 (466)
349 PRK08626 fumarate reductase fl 34.4 62 0.0013 33.2 4.8 39 299-337 385-430 (657)
350 PRK14694 putative mercuric red 34.4 46 0.00099 32.5 3.8 37 296-334 298-334 (468)
351 TIGR01372 soxA sarcosine oxida 34.2 86 0.0019 34.0 6.0 41 112-152 365-409 (985)
352 COG3486 IucD Lysine/ornithine 34.2 48 0.001 31.5 3.6 51 101-151 99-154 (436)
353 PRK06854 adenylylsulfate reduc 33.9 69 0.0015 32.5 5.0 41 113-153 148-194 (608)
354 PRK08275 putative oxidoreducta 33.3 59 0.0013 32.6 4.4 51 103-153 141-199 (554)
355 PRK06370 mercuric reductase; V 33.1 54 0.0012 31.9 4.0 37 296-334 297-333 (463)
356 PRK07818 dihydrolipoamide dehy 32.9 51 0.0011 32.1 3.8 37 296-334 299-335 (466)
357 PRK05675 sdhA succinate dehydr 32.9 1.1E+02 0.0024 30.7 6.3 39 298-336 360-405 (570)
358 PRK05249 soluble pyridine nucl 32.4 51 0.0011 32.0 3.7 36 296-333 298-333 (461)
359 PTZ00306 NADH-dependent fumara 32.4 49 0.0011 36.5 3.9 41 112-152 561-618 (1167)
360 PRK08958 sdhA succinate dehydr 32.0 1.4E+02 0.003 30.3 6.8 50 104-153 144-205 (588)
361 PLN02507 glutathione reductase 31.8 54 0.0012 32.3 3.8 37 296-334 326-362 (499)
362 PLN02661 Putative thiazole syn 31.4 1.4E+02 0.003 28.0 6.1 49 103-151 176-241 (357)
363 PF08013 Tagatose_6_P_K: Tagat 30.8 64 0.0014 30.7 3.8 81 261-345 41-126 (424)
364 PRK06292 dihydrolipoamide dehy 30.8 55 0.0012 31.7 3.7 37 296-334 294-330 (460)
365 PLN02815 L-aspartate oxidase 30.5 72 0.0016 32.3 4.5 40 297-336 387-433 (594)
366 PRK06467 dihydrolipoamide dehy 30.3 56 0.0012 31.9 3.6 37 296-334 300-336 (471)
367 COG0029 NadB Aspartate oxidase 30.2 84 0.0018 30.7 4.6 55 102-156 136-199 (518)
368 TIGR01316 gltA glutamate synth 29.6 1.5E+02 0.0032 28.8 6.4 42 111-152 322-385 (449)
369 PRK12771 putative glutamate sy 29.3 1.6E+02 0.0035 29.5 6.7 50 103-152 310-378 (564)
370 COG1249 Lpd Pyruvate/2-oxoglut 29.1 72 0.0016 31.0 4.1 36 297-334 299-334 (454)
371 COG0492 TrxB Thioredoxin reduc 29.0 60 0.0013 29.7 3.3 50 103-154 61-115 (305)
372 PRK06327 dihydrolipoamide dehy 28.6 67 0.0014 31.4 3.8 37 296-334 310-346 (475)
373 PRK06416 dihydrolipoamide dehy 28.6 66 0.0014 31.2 3.8 37 296-334 297-333 (462)
374 PRK07057 sdhA succinate dehydr 28.1 1.5E+02 0.0033 29.9 6.4 50 104-153 149-210 (591)
375 PF01494 FAD_binding_3: FAD bi 27.6 94 0.002 28.3 4.5 36 301-336 291-329 (356)
376 TIGR00137 gid_trmFO tRNA:m(5)U 27.4 86 0.0019 30.3 4.2 41 293-336 321-362 (433)
377 TIGR01350 lipoamide_DH dihydro 27.4 71 0.0015 31.0 3.8 36 297-334 296-331 (461)
378 PLN00128 Succinate dehydrogena 27.3 1.5E+02 0.0032 30.4 6.1 42 112-153 201-249 (635)
379 PRK06115 dihydrolipoamide dehy 27.2 69 0.0015 31.2 3.6 37 296-334 301-337 (466)
380 PRK07573 sdhA succinate dehydr 27.1 1E+02 0.0022 31.5 4.9 36 297-332 416-457 (640)
381 TIGR02053 MerA mercuric reduct 26.9 74 0.0016 30.9 3.8 37 296-334 292-328 (463)
382 PRK12831 putative oxidoreducta 26.6 2E+02 0.0043 28.1 6.7 45 108-152 328-394 (464)
383 PRK07845 flavoprotein disulfid 26.6 75 0.0016 30.9 3.8 37 296-334 300-336 (466)
384 TIGR03452 mycothione_red mycot 25.9 77 0.0017 30.7 3.7 37 296-334 291-327 (452)
385 TIGR01318 gltD_gamma_fam gluta 25.6 1.6E+02 0.0035 28.7 5.9 43 110-152 332-396 (467)
386 PRK07846 mycothione reductase; 25.4 83 0.0018 30.5 3.8 37 296-334 288-324 (451)
387 PRK07804 L-aspartate oxidase; 25.3 1E+02 0.0022 30.7 4.5 39 297-335 367-412 (541)
388 PLN02815 L-aspartate oxidase 25.3 1.3E+02 0.0027 30.6 5.1 41 112-152 170-220 (594)
389 TIGR01438 TGR thioredoxin and 25.2 93 0.002 30.5 4.1 38 296-334 306-343 (484)
390 PRK09077 L-aspartate oxidase; 25.2 1.7E+02 0.0037 29.1 6.1 50 104-153 143-206 (536)
391 TIGR01372 soxA sarcosine oxida 24.9 94 0.002 33.6 4.4 35 300-337 438-472 (985)
392 COG1206 Gid NAD(FAD)-utilizing 24.4 84 0.0018 29.2 3.3 29 301-331 335-366 (439)
393 PLN02546 glutathione reductase 24.1 86 0.0019 31.5 3.7 37 296-334 376-412 (558)
394 PRK06912 acoL dihydrolipoamide 23.4 90 0.002 30.3 3.6 36 296-333 293-328 (458)
395 TIGR02061 aprA adenosine phosp 23.3 1.2E+02 0.0026 30.9 4.5 41 113-153 141-190 (614)
396 PRK09853 putative selenate red 23.2 1.7E+02 0.0038 31.7 5.8 48 105-153 714-778 (1019)
397 COG3573 Predicted oxidoreducta 23.2 16 0.00035 33.7 -1.4 35 297-332 503-548 (552)
398 PRK08243 4-hydroxybenzoate 3-m 23.1 1.3E+02 0.0027 28.5 4.5 35 301-335 279-316 (392)
399 PRK07395 L-aspartate oxidase; 22.8 1.1E+02 0.0023 30.7 4.1 36 298-333 358-400 (553)
400 PRK13800 putative oxidoreducta 22.6 1.1E+02 0.0023 32.9 4.2 39 297-336 371-409 (897)
401 PF02736 Myosin_N: Myosin N-te 22.4 1.4E+02 0.003 18.1 3.1 18 125-142 20-37 (42)
402 KOG0404 Thioredoxin reductase 22.2 1.6E+02 0.0036 25.7 4.4 50 103-154 70-124 (322)
403 PF03550 LolB: Outer membrane 21.9 1.4E+02 0.003 24.2 3.9 28 117-144 41-68 (157)
404 COG0029 NadB Aspartate oxidase 21.8 1.2E+02 0.0026 29.7 3.9 40 297-336 351-397 (518)
405 PLN02852 ferredoxin-NADP+ redu 21.7 98 0.0021 30.5 3.5 41 297-338 383-423 (491)
406 PRK06184 hypothetical protein; 21.2 1.1E+02 0.0025 30.0 3.9 33 301-333 281-316 (502)
407 PLN02172 flavin-containing mon 21.2 80 0.0017 30.8 2.8 21 133-153 267-287 (461)
408 TIGR03315 Se_ygfK putative sel 20.9 2.2E+02 0.0048 30.9 6.0 47 104-152 711-774 (1012)
No 1
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=1.8e-48 Score=374.94 Aligned_cols=334 Identities=82% Similarity=1.328 Sum_probs=289.9
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHhhhhhcCCCCcccCh
Q 017808 3 GNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISL 82 (365)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~S~ 82 (365)
+.++|++....+...+.++.+...+.......|+|+.+++++++.+.+..+.+++.++++++++.++.++++.+++++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 180 (435)
T PLN02268 101 GNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISL 180 (435)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCch
Confidence 45788888888888888888877765554567899999998776554333334588889988877778889999999999
Q ss_pred hccccccccCCCceeccCChHHHHHHHhccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccc
Q 017808 83 KSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKF 162 (365)
Q Consensus 83 ~~~~~~~~~~g~~~~~~gG~~~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f 162 (365)
..+.....+.|++..+.+||++|+++|+++++|++|++|++|.+.+++|.|++.+|+++.||+||+|+|++++++..+.|
T Consensus 181 ~~~~~~~~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f 260 (435)
T PLN02268 181 KSWDQEELLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKF 260 (435)
T ss_pred hhcCCccccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCccee
Confidence 88765444566677899999999999999999999999999999999999999999889999999999999998766889
Q ss_pred cCCCcHHHHHHHhhcCCccccEEEEEcCCCCCCCCCcceeecCCCCceeEeeeccCCCCCceEEEEecchhhHHHhcCCH
Q 017808 163 EPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSD 242 (365)
Q Consensus 163 ~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ 242 (365)
.|+||+.+++++++++||+..|+++.|+++||++..++|.+.++...+.++.+.....+.++|++++.|+.+..+..+++
T Consensus 261 ~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ 340 (435)
T PLN02268 261 EPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSD 340 (435)
T ss_pred cCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCH
Confidence 99999999999999999999999999999999876777877654444555555555566778999999998999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHH
Q 017808 243 EAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAF 322 (365)
Q Consensus 243 ~e~~~~~~~~L~~~~~~~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~ 322 (365)
+++++.++++|+++||...+|..+..++|.++||++|+|++..||+....++.+++|+++||||||+|+..|+|+||||+
T Consensus 341 ~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~ 420 (435)
T PLN02268 341 EAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAY 420 (435)
T ss_pred HHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHH
Confidence 99999999999999987778999999999999999999999889987778889999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHH
Q 017808 323 STGLMAAEDCRMRV 336 (365)
Q Consensus 323 ~SG~~aA~~i~~~l 336 (365)
+||+|||++|++.|
T Consensus 421 ~sG~raA~~v~~~l 434 (435)
T PLN02268 421 STGVMAAEECRMRL 434 (435)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 2
>PLN02976 amine oxidase
Probab=100.00 E-value=4.7e-47 Score=384.96 Aligned_cols=336 Identities=36% Similarity=0.631 Sum_probs=276.0
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHccCc------h---------------------
Q 017808 2 DGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRP------E--------------------- 51 (365)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~s~~~~~~~~~~~~~------~--------------------- 51 (365)
+|.++|.+..+++...|+++++....... ....++|++++|...+.+.. +
T Consensus 791 ~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 870 (1713)
T PLN02976 791 TGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGV 870 (1713)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcc
Confidence 68999999999999999999987764322 23458899999885442110 0
Q ss_pred -----------hhhhhHHHHHHHHHHHhhhhhcCCCCcccChhcccc---ccccCCCceeccCChHHHHHHHhccCCeec
Q 017808 52 -----------LRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDK---EELLPGGHGLMVRGYLPVINTLAKGLDIRL 117 (365)
Q Consensus 52 -----------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~S~~~~~~---~~~~~g~~~~~~gG~~~L~~~L~~~l~I~l 117 (365)
.-+....+.+++|++..+...++.+++++|+.+|.. +..+.|..+.+.|||++|+++|++.+.|+|
T Consensus 871 ~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrL 950 (1713)
T PLN02976 871 DGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHL 950 (1713)
T ss_pred cccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeec
Confidence 001123345566665544344588999999988763 223566788899999999999999999999
Q ss_pred CceeEEEEec----------CCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhcCCccccEEEE
Q 017808 118 GHRVTKITRH----------YIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIM 187 (365)
Q Consensus 118 ~~~V~~I~~~----------~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l 187 (365)
|++|++|.+. +++|.|+|.+|+++.||+||+|+|+++|+...|.|.|+||..++++|++++||.+.||+|
T Consensus 951 NtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~L 1030 (1713)
T PLN02976 951 NHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVL 1030 (1713)
T ss_pred CCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEE
Confidence 9999999984 467999999999999999999999999987778999999999999999999999999999
Q ss_pred EcCCCCCCC-CCcceeecCC---CCceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcCC--CC
Q 017808 188 HFDKVFWPN-VEFLGVVSDT---SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--AS 261 (365)
Q Consensus 188 ~~~~~~w~~-~~~~g~~~~~---~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~--~~ 261 (365)
.|+++||++ ..++|..... ...+..+++...+.+.++|++|+.|..+..+..++++++++.+++.|+++||. .+
T Consensus 1031 eFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iP 1110 (1713)
T PLN02976 1031 EFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVP 1110 (1713)
T ss_pred EeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCccccc
Confidence 999999964 4667755432 11223344544455678999999999898999999999999999999999985 46
Q ss_pred CccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCC-EEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 262 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 262 ~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~-l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
.|..+.+++|.++||++|+|++..||.....++.+++|+++ ||||||+|+..|+||||||+.||+|||++|+..+.
T Consensus 1111 dPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1111 DPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred CcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999877788899999976 99999999999999999999999999999998764
No 3
>PLN03000 amine oxidase
Probab=100.00 E-value=1.6e-46 Score=372.71 Aligned_cols=335 Identities=32% Similarity=0.503 Sum_probs=273.0
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHhhhhhcCCCCc
Q 017808 2 DGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAE 78 (365)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (365)
+|.+++++....+...++.+++.+.+++. ....|+|+++++..+... ..........++++|.+..++..++.+..
T Consensus 276 ~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~SLg~aLe~~~~~-~g~~~t~e~~~Ll~w~lanLE~~~as~ls 354 (881)
T PLN03000 276 DGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQV-SGNDVATEEMGLFNWHLANLEYANAGLVS 354 (881)
T ss_pred CCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCCcHHHHHHHHHHH-HcccCCHHHHHHHHHHHHHHhcccccCHH
Confidence 57888888777777778888777655432 345688988866532111 11111122345667766666667788888
Q ss_pred ccChhccccc--cccCCCceeccCChHHHHHHHhccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhh
Q 017808 79 TISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 156 (365)
Q Consensus 79 ~~S~~~~~~~--~~~~g~~~~~~gG~~~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~ 156 (365)
.+|+..|.+. ..+.|..+.++|||++|+++|++.++|++|++|++|.+.+++|.|++.+ +++.||+||+|+|+++|+
T Consensus 355 ~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk 433 (881)
T PLN03000 355 KLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLK 433 (881)
T ss_pred HHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCCcccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHh
Confidence 8888776532 2245667889999999999999999999999999999999999998765 489999999999999999
Q ss_pred cCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCC-CCCcceeecCCCC---ceeEeeeccCCCCCceEEEEecch
Q 017808 157 ARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQ 232 (365)
Q Consensus 157 ~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~-~~~~~g~~~~~~~---~~~~~~~~~~~~g~~~l~~~~~g~ 232 (365)
+..|.|.|+||++++++|++++||.+.||++.|+++||+ +..++|.+.+... ....+++..+..+.++|++|+.|+
T Consensus 434 ~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd 513 (881)
T PLN03000 434 NGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGE 513 (881)
T ss_pred hCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCc
Confidence 878999999999999999999999999999999999995 4477888754321 123344555445677999999999
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHhcCC----CCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCC--CCEEEe
Q 017808 233 LARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFA 306 (365)
Q Consensus 233 ~a~~~~~~~~~e~~~~~~~~L~~~~~~----~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~--~~l~~a 306 (365)
.+..++.++++++++.++++|+++|+. .++|+.+.+++|.+|||++|+|++..+|+....++.+++|+ ++||||
T Consensus 514 ~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFA 593 (881)
T PLN03000 514 AAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFA 593 (881)
T ss_pred hhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEe
Confidence 999999999999999999999999962 46889999999999999999999999998888899999996 589999
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 307 GEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 307 G~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
||+|+..|+||||||++||+|||++|+..+..
T Consensus 594 GEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 594 GEATTRRYPATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred ehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence 99999989999999999999999999987653
No 4
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=5.2e-45 Score=361.06 Aligned_cols=334 Identities=33% Similarity=0.523 Sum_probs=270.5
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHhhhhhcCCCCc
Q 017808 2 DGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAE 78 (365)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (365)
+|.+++.+....+...|+++++...++.. ....|+|+++++.+.... .........+++++|++..++..++.+++
T Consensus 252 ~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~-~~~~~t~~e~~ll~~~~~~le~a~~~~~s 330 (738)
T PLN02529 252 DGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQL-YGVARSTEERQLLDWHLANLEYANAGCLS 330 (738)
T ss_pred CCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhh-hccCCCHHHHHHHHHHHHHhceecCCChH
Confidence 67888888777777777777776654332 234688999998753211 11011234567888887666677788899
Q ss_pred ccChhccccc--cccCCCceeccCChHHHHHHHhccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhh
Q 017808 79 TISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 156 (365)
Q Consensus 79 ~~S~~~~~~~--~~~~g~~~~~~gG~~~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~ 156 (365)
.+|+..|.+. ..+.|.++.+.|||++|+++|+++++|+||++|++|.+.+++|+|++. ++++.||+||+|+|+++|+
T Consensus 331 ~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk 409 (738)
T PLN02529 331 DLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLK 409 (738)
T ss_pred HhhhhHhhhccccccCCceEEECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHH
Confidence 9999887643 234566788999999999999999999999999999999999999864 4589999999999999999
Q ss_pred cCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCCC-CCcceeecCCC--C-ceeEeeeccCCCCCceEEEEecch
Q 017808 157 ARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTS--Y-GCSYFLNLHKATGHCVLVYMPAGQ 232 (365)
Q Consensus 157 ~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~~--~-~~~~~~~~~~~~g~~~l~~~~~g~ 232 (365)
+..+.|.|+||+.++++|++++||++.||++.|+++||+. .+.+|.+.... . ....+++.+...+.++|++|+.|+
T Consensus 410 ~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~ 489 (738)
T PLN02529 410 KRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGE 489 (738)
T ss_pred hccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECch
Confidence 7778999999999999999999999999999999999954 45777764321 1 122333444334557899999999
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHhcCC----CCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCC-CCEEEec
Q 017808 233 LARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAG 307 (365)
Q Consensus 233 ~a~~~~~~~~~e~~~~~~~~L~~~~~~----~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~-~~l~~aG 307 (365)
.+..++.++++++++.++++|+++|+. .++|..+..++|.+|||++|+|++..++.....++.+++|+ ++|||||
T Consensus 490 ~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAG 569 (738)
T PLN02529 490 AAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAG 569 (738)
T ss_pred hhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEE
Confidence 999999999999999999999999963 35788999999999999999999988877665677888885 8899999
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 308 EATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 308 ~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
|+|+..|+|+||||++||+|||++|++.+.
T Consensus 570 EaTs~~~pgtVeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 570 EATTRQYPATMHGAFLSGLREASRILHVAR 599 (738)
T ss_pred HHHhCCCCeEeHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998764
No 5
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=3.4e-44 Score=356.63 Aligned_cols=337 Identities=31% Similarity=0.506 Sum_probs=272.4
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHhhhhhcCCC
Q 017808 2 DGNQVPQELVTKVGEAFESILKETDKVREE-----HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAAD 76 (365)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 76 (365)
+|..++.+..+.+..+++.+++...+++.. ...|+|++++++++. ...+...+...+.+++|.+..++..++.+
T Consensus 330 dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~-~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ 408 (808)
T PLN02328 330 DGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFR-HVYKVAEDPQERMLLNWHLANLEYANASL 408 (808)
T ss_pred CCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHh-hhhccCCCHHHHHHHHHHHHHHhccchhh
Confidence 577777777777777788888776554321 335889999987432 11111112344567787766666777888
Q ss_pred CcccChhccccc--cccCCCceeccCChHHHHHHHhccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 77 AETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 77 ~~~~S~~~~~~~--~~~~g~~~~~~gG~~~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
...+|+..|.+. ....|..+.+.|||++|+++|++.++|++|++|++|.+.+++|.| +.+|+++.||+||+|+|+++
T Consensus 409 ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~v 487 (808)
T PLN02328 409 MSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGV 487 (808)
T ss_pred HHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHH
Confidence 888998776542 223456788999999999999999999999999999999999988 45688899999999999999
Q ss_pred hhcCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCC-CCCcceeecCCCC---ceeEeeeccCCCCCceEEEEec
Q 017808 155 LKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPA 230 (365)
Q Consensus 155 l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~-~~~~~g~~~~~~~---~~~~~~~~~~~~g~~~l~~~~~ 230 (365)
|++..|.|.|+||++++++|++++||++.||++.|+++||+ +...+|.+.+... ....+++.....+.++|++|++
T Consensus 488 Lk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~ 567 (808)
T PLN02328 488 LKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVA 567 (808)
T ss_pred HhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEec
Confidence 99777899999999999999999999999999999999995 3466777654221 1233444443455679999999
Q ss_pred chhhHHHhcCCHHHHHHHHHHHHHHhcCC----CCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCC--CCEE
Q 017808 231 GQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLF 304 (365)
Q Consensus 231 g~~a~~~~~~~~~e~~~~~~~~L~~~~~~----~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~--~~l~ 304 (365)
|+.+..+..++++++++.++++|+++|+. .+.|..+..++|.++||++|+|++..+|+....++.+++|+ ++||
T Consensus 568 G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~ 647 (808)
T PLN02328 568 GDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVF 647 (808)
T ss_pred ChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEE
Confidence 99999999999999999999999999973 35789999999999999999999999998767788899986 5899
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 017808 305 FAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 340 (365)
Q Consensus 305 ~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~~ 340 (365)
||||+|+..|+|+||||+.||+|||++|++.+..+.
T Consensus 648 FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~ 683 (808)
T PLN02328 648 FAGEATNKQYPATMHGAFLSGMREAANILRVARRRS 683 (808)
T ss_pred EEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999998999999999999999999999876553
No 6
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.9e-42 Score=335.47 Aligned_cols=333 Identities=30% Similarity=0.410 Sum_probs=253.5
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHH---------------h------hCCCCCCHHHHHHHHHccCc----hh----
Q 017808 2 DGNQVPQELVTKVGEAFESILKETDKVR---------------E------EHDEDMSIQRAISIVFDRRP----EL---- 52 (365)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~------~~~~d~s~~~~~~~~~~~~~----~~---- 52 (365)
+|..++++..+.+.+++..+++.+.... . ....+.|+++|+++.+.+.. +.
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~ 185 (539)
T PLN02568 106 GGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGLDAYWDSVSADEQIK 185 (539)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHHHHHHhhcccchhhc
Confidence 5788999999999999999987665211 0 01235689999987553210 00
Q ss_pred ----hhhh-HHHHHHHHHHHhhhhhcCCCCcccChhccc---cccccCCCceeccCChHHHHHHHhccCC---eecCcee
Q 017808 53 ----RLEG-LAHKVLQWYLCRMEGWFAADAETISLKSWD---KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRV 121 (365)
Q Consensus 53 ----~~~~-~~~~~~~~~~~~~~~~~g~~~~~~S~~~~~---~~~~~~g~~~~~~gG~~~L~~~L~~~l~---I~l~~~V 121 (365)
...+ ..+.++.++.. ++. ...++.++|...+. .+..+.|....+.||+++|+++|++.++ |++|++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~-~e~-~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V 263 (539)
T PLN02568 186 GYGGWSRKLLEEAIFTMHEN-TQR-TYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKV 263 (539)
T ss_pred cccchhHHHHHHHHHHHHHH-hhc-cccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeE
Confidence 0001 11233333322 221 23455555554432 2334566788899999999999999885 9999999
Q ss_pred EEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcC----CccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCCC-
Q 017808 122 TKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR----TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN- 196 (365)
Q Consensus 122 ~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~----~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~- 196 (365)
++|.+.+++|+|++.+|+++.||+||+|+|+++|++. .+.|.|+||+.++++|++++||.++|+++.|+++||..
T Consensus 264 ~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~ 343 (539)
T PLN02568 264 TRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSP 343 (539)
T ss_pred EEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcc
Confidence 9999999999999999989999999999999999864 35799999999999999999999999999999999842
Q ss_pred -----CCcceeecCCCC------ceeEee----eccC-CCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcCC-
Q 017808 197 -----VEFLGVVSDTSY------GCSYFL----NLHK-ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD- 259 (365)
Q Consensus 197 -----~~~~g~~~~~~~------~~~~~~----~~~~-~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~- 259 (365)
...++.+..... ...++. +..+ ..+.++|++|+.|+.+..++.++++++++.+++.|+++||.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~ 423 (539)
T PLN02568 344 EDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRR 423 (539)
T ss_pred cccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCc
Confidence 112222211110 011111 1111 23567999999999999999999999999999999999974
Q ss_pred C----------------------CCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCC-------------CEE
Q 017808 260 A----------------------SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------------NLF 304 (365)
Q Consensus 260 ~----------------------~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~-------------~l~ 304 (365)
. ..|..+..++|.+|||++|+|++.++|.....++.+++|++ +||
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~ 503 (539)
T PLN02568 424 VAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLL 503 (539)
T ss_pred ccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEE
Confidence 1 36889999999999999999999999988778889999975 699
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 305 FAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 305 ~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
||||+|+..|+||||||++||+|||++|++..
T Consensus 504 FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 504 FAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred EeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998753
No 7
>PLN02676 polyamine oxidase
Probab=100.00 E-value=4.3e-42 Score=332.01 Aligned_cols=327 Identities=28% Similarity=0.423 Sum_probs=249.2
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHhh----CCCCCCHHHH--HHHHHccCchhhhhhHHHHHHHHHHHhhhhhcCC
Q 017808 2 DGNQVPQELVTKVGEAFESILKETDKVREE----HDEDMSIQRA--ISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAA 75 (365)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 75 (365)
+|..++.+..+++...+..+.+.++.+... ...++|+.+. +.+.+ .. ........++. ....++.
T Consensus 121 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~~----~~~~~~~~~~~--~~~~~~~ 191 (487)
T PLN02676 121 DGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQRLFGQV---PK----TPLEMVIDYYN--YDYEFAE 191 (487)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHhhC---CC----CHHHHHHHHHh--ccceecc
Confidence 566777777777777777777655554322 2346676443 22221 00 11112222221 1123688
Q ss_pred CCcccChhcccc---ccccCCCceec--cCChHHHHHHHhccC-----------CeecCceeEEEEecCCeeEEEEcCCc
Q 017808 76 DAETISLKSWDK---EELLPGGHGLM--VRGYLPVINTLAKGL-----------DIRLGHRVTKITRHYIGVKVTVEGGK 139 (365)
Q Consensus 76 ~~~~~S~~~~~~---~~~~~g~~~~~--~gG~~~L~~~L~~~l-----------~I~l~~~V~~I~~~~~~v~V~~~~g~ 139 (365)
+++++|+..+.. +....+..+++ ++|+++|+++|++.+ +|+||++|++|.+++++|+|+|.+|+
T Consensus 192 ~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~ 271 (487)
T PLN02676 192 PPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGS 271 (487)
T ss_pred CccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCC
Confidence 999999987652 11223345555 689999999999854 49999999999999999999999999
Q ss_pred EEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCCCC-CcceeecCC-CCc-eeEeeec
Q 017808 140 TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDT-SYG-CSYFLNL 216 (365)
Q Consensus 140 ~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~-~~~g~~~~~-~~~-~~~~~~~ 216 (365)
++.||+||+|+|+++|+...+.|.|+||+.+++++++++||.+.|+++.|+++||++. ......... ... ...+...
T Consensus 272 ~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (487)
T PLN02676 272 VYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHL 351 (487)
T ss_pred EEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhc
Confidence 9999999999999999876799999999999999999999999999999999999652 222221111 110 1111111
Q ss_pred c-CCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcCC-CCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHH
Q 017808 217 H-KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYE 294 (365)
Q Consensus 217 ~-~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~-~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~ 294 (365)
. ...+.++|++++.++.+..+..+++++..+.+++.|+++||. .++|+.+..++|.+|||++|+|++.+||......+
T Consensus 352 ~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~ 431 (487)
T PLN02676 352 ENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFD 431 (487)
T ss_pred ccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHH
Confidence 1 123446888899898889999999999999999999999975 66889999999999999999999989998877788
Q ss_pred HHhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 295 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 295 ~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
.+++|+++||||||+|+..|.|+||||++||+|||++|++.+.
T Consensus 432 ~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 432 QIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred HHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998764
No 8
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.7e-43 Score=319.47 Aligned_cols=334 Identities=29% Similarity=0.393 Sum_probs=267.5
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHccC---ch-hh-hhhHHHHHHHHHHHhhhhhcCC-
Q 017808 2 DGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRR---PE-LR-LEGLAHKVLQWYLCRMEGWFAA- 75 (365)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~~~~~~~~~g~- 75 (365)
+|+.|+++..+++.+++..+....++.... ....|+++++.+.+++. ++ .+ ...+..++++.++.....+.|+
T Consensus 115 ~g~~V~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~SvG~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d 193 (498)
T KOG0685|consen 115 NGEVVPEELLDELNEITVTLSDKLREAEIA-HDEGSVGEYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGAD 193 (498)
T ss_pred cCccCcHHHHHHHHHHHHhhhhhccccccc-CccccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccC
Confidence 689999999999999999888877663222 34568999988544331 11 11 1245667777777766666665
Q ss_pred CCcccChhccccccccCC--CceeccCChHHHHHHHhccC-----------CeecCceeEEEEecC-CeeEEEEcCCcEE
Q 017808 76 DAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGL-----------DIRLGHRVTKITRHY-IGVKVTVEGGKTF 141 (365)
Q Consensus 76 ~~~~~S~~~~~~~~~~~g--~~~~~~gG~~~L~~~L~~~l-----------~I~l~~~V~~I~~~~-~~v~V~~~~g~~~ 141 (365)
+.+++|+..+..+..+.| .....+.||..+++.|++.+ +|+++++|.+|.+.+ +.|.|+|.||+.+
T Consensus 194 ~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~ 273 (498)
T KOG0685|consen 194 NLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVF 273 (498)
T ss_pred chhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEE
Confidence 679999999887777777 46667899999999999854 266669999999986 5599999999999
Q ss_pred EcCEEEEecChhhhhcCC-ccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCCC-CCcceeecCCCC-----------
Q 017808 142 VADAVVVAVPLGVLKART-IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSY----------- 208 (365)
Q Consensus 142 ~ad~VI~t~p~~~l~~~~-i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~~~----------- 208 (365)
.|||||||+|+++|++.. -.|.|+||..|++||+++++|+++|+||.|++|||+. ...+..+.....
T Consensus 274 ~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w 353 (498)
T KOG0685|consen 274 HADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAW 353 (498)
T ss_pred eccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHH
Confidence 999999999999999743 4599999999999999999999999999999999964 444444432211
Q ss_pred --ceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcCC--CCCccEEEeccCCCCCCCCCcCCCC
Q 017808 209 --GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYD 284 (365)
Q Consensus 209 --~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~--~~~p~~~~~~~W~~~~~~~g~y~~~ 284 (365)
....|..... ...+|.+|+.|..+..++.++|+++.+.+...|++++++ +++|..+.++.|.++||++|+|||.
T Consensus 354 ~~~~~~f~~v~~--~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~ 431 (498)
T KOG0685|consen 354 EEDIMGFQPVSW--APNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYR 431 (498)
T ss_pred HhhceEEEEcCc--chhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEe
Confidence 0122222221 225999999999999999999999999999999999984 8899999999999999999999999
Q ss_pred CCCCCHHHHHHHhCCC--------CCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 285 TVGKSHDLYERLRIPV--------DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 285 ~~g~~~~~~~~l~~p~--------~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
++|+.......++.|+ +.+.||||+|+..+++|+|||++||+|+|++++.....
T Consensus 432 svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 432 SVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred eccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHh
Confidence 9998766666666653 25899999999999999999999999999999885543
No 9
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-37 Score=293.28 Aligned_cols=283 Identities=48% Similarity=0.793 Sum_probs=248.7
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCcccChhccccccccCC--CceeccCChHHHHHHHhccCCeecCceeEEEEecCCe-eE
Q 017808 56 GLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG-VK 132 (365)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~g~~~~~~S~~~~~~~~~~~g--~~~~~~gG~~~L~~~L~~~l~I~l~~~V~~I~~~~~~-v~ 132 (365)
.....+++|++..++..+....++++...|.+...+.+ .+..+.+|+..++..|+.+++|+++++|.+|.+.+++ +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~~~~ 249 (501)
T KOG0029|consen 170 GEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDGAVK 249 (501)
T ss_pred hhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecCCceE
Confidence 34556788888778888888888999988886544433 3578899999999999999999999999999998877 35
Q ss_pred EEEcCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCC-CCCCcceeecCCCCcee
Q 017808 133 VTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS 211 (365)
Q Consensus 133 V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w-~~~~~~g~~~~~~~~~~ 211 (365)
|++.++..+.+|+||+|+|+++|+...|.|.|+||.++.++|+++++|.+.||.+.|+..|| ++.+++|.+..+.....
T Consensus 250 ~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~ 329 (501)
T KOG0029|consen 250 VTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRG 329 (501)
T ss_pred EEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccc
Confidence 55555656999999999999999988899999999999999999999999999999999999 67789998876654333
Q ss_pred --EeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcC--CCCCccEEEeccCCCCCCCCCcCCCCCCC
Q 017808 212 --YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVG 287 (365)
Q Consensus 212 --~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~--~~~~p~~~~~~~W~~~~~~~g~y~~~~~g 287 (365)
.|++..+..+.++++.++.+..+..+..++++++++.++..|+++|+ ..+.|+++.+++|..++++.|+|++..++
T Consensus 330 ~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~ 409 (501)
T KOG0029|consen 330 LFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVG 409 (501)
T ss_pred hhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCC
Confidence 55677676777789999999889999999999999999999999999 47899999999999999999999999888
Q ss_pred CCHHHHHHHhCCCCC-EEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 288 KSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 288 ~~~~~~~~l~~p~~~-l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
.....++.+++|+.+ +||||++|...|.|+|+||+.||.++|..|+..+..
T Consensus 410 ~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 410 SDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred CChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 877778999999988 999999999999999999999999999999998773
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=260.96 Aligned_cols=239 Identities=27% Similarity=0.384 Sum_probs=204.1
Q ss_pred eccCChHHHHHHHhccC--CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHH
Q 017808 97 LMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 174 (365)
Q Consensus 97 ~~~gG~~~L~~~L~~~l--~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai 174 (365)
...|||+.|++++++.+ .|+++++|.+|.+.+++|+|++.+..++.+|+||||+|+.++. .|.|.|.+|+.+++++
T Consensus 203 ~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~ 280 (450)
T COG1231 203 QRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAA 280 (450)
T ss_pred ccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHh
Confidence 34499999999999988 5999999999999999999999995589999999999999987 6889999999999999
Q ss_pred hhcCCccccEEEEEcCCCCCCCCC-cceeecCCCCc-eeEeeeccCCCCCceEEE-EecchhhHHHhcCCHHHHHHHHHH
Q 017808 175 DDLGVGIENKIIMHFDKVFWPNVE-FLGVVSDTSYG-CSYFLNLHKATGHCVLVY-MPAGQLARDIEKMSDEAAANFAFT 251 (365)
Q Consensus 175 ~~~~~~~~~kv~l~~~~~~w~~~~-~~g~~~~~~~~-~~~~~~~~~~~g~~~l~~-~~~g~~a~~~~~~~~~e~~~~~~~ 251 (365)
+.++|++.+|+.+.|++|||++.+ +.|....+... ..++++....+|..+|.. |..|..+..|..+++++.++.++.
T Consensus 281 ~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~ 360 (450)
T COG1231 281 KGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLA 360 (450)
T ss_pred cCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHH
Confidence 999999999999999999997665 55544333222 223333323356677776 666888999999999999999999
Q ss_pred HHHHhcCC-CCCccEE-EeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHHHHHHHHH
Q 017808 252 QLKKILPD-ASSPIQY-LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 329 (365)
Q Consensus 252 ~L~~~~~~-~~~p~~~-~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA 329 (365)
.+.++||+ ...+.+. ...+|.++||+.|+|..+.+|+.....+.+..|.++|+|||+.+.+.++|+++||++||++||
T Consensus 361 ~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA 440 (450)
T COG1231 361 RLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAA 440 (450)
T ss_pred hHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHH
Confidence 99999995 5566666 788999999999988888999988888999999999999997777778999999999999999
Q ss_pred HHHHHHHH
Q 017808 330 EDCRMRVL 337 (365)
Q Consensus 330 ~~i~~~l~ 337 (365)
.+|.+.+.
T Consensus 441 ~ei~~~l~ 448 (450)
T COG1231 441 AEIHALLS 448 (450)
T ss_pred HHHHHhhc
Confidence 99987653
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.97 E-value=5.7e-30 Score=245.77 Aligned_cols=234 Identities=37% Similarity=0.548 Sum_probs=193.4
Q ss_pred ccCChHHHHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHh
Q 017808 98 MVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 175 (365)
Q Consensus 98 ~~gG~~~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~ 175 (365)
..|++..+...+.+ +.+|++|++|++|+.++++|.|++.+|+++.||+||+|+|+..+.+ +.+.|++|..++++++
T Consensus 207 ~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~ 284 (450)
T PF01593_consen 207 GMGGLSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIE 284 (450)
T ss_dssp ETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHH
T ss_pred cccchhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhccccccccccccc
Confidence 45566666666655 4589999999999999999999999999999999999999999984 6789999999999999
Q ss_pred hcCCccccEEEEEcCCCCCCCC-CcceeecCCC-Ccee-EeeeccCC--CCCceEEEEecchhhHHHhcCCHHHHHHHHH
Q 017808 176 DLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS-YGCS-YFLNLHKA--TGHCVLVYMPAGQLARDIEKMSDEAAANFAF 250 (365)
Q Consensus 176 ~~~~~~~~kv~l~~~~~~w~~~-~~~g~~~~~~-~~~~-~~~~~~~~--~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~ 250 (365)
+++++++.||++.|+.+||+.. ..++.+..+. .... +......+ .+..+++.++.++.+..+..++++++.+.++
T Consensus 285 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 364 (450)
T PF01593_consen 285 NLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVL 364 (450)
T ss_dssp TEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHH
Confidence 9999999999999999999654 5667665543 1122 22222222 2456888888888778899999999999999
Q ss_pred HHHHHhcCC--CCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCC-CCEEEeccccCCCCcchhHHHHHHHHH
Q 017808 251 TQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLM 327 (365)
Q Consensus 251 ~~L~~~~~~--~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~-~~l~~aG~~~~~~~~g~v~gA~~SG~~ 327 (365)
++|+++++. .++|..+.+++|.++++..|+|++..++.....++.+.+|+ +||||||+++++++.|+++||+.||++
T Consensus 365 ~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~ 444 (450)
T PF01593_consen 365 DDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRR 444 (450)
T ss_dssp HHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHH
Confidence 999999983 56778889999999999999999887776545788899999 599999999999877999999999999
Q ss_pred HHHHHH
Q 017808 328 AAEDCR 333 (365)
Q Consensus 328 aA~~i~ 333 (365)
||++|+
T Consensus 445 aA~~il 450 (450)
T PF01593_consen 445 AAEEIL 450 (450)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999986
No 12
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.96 E-value=4.9e-28 Score=231.97 Aligned_cols=275 Identities=23% Similarity=0.281 Sum_probs=195.5
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhccccc--c-cc----CCCceeccCChHH
Q 017808 33 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE--E-LL----PGGHGLMVRGYLP 104 (365)
Q Consensus 33 ~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~~--~-~~----~g~~~~~~gG~~~ 104 (365)
..++|+.+++++++ +++++.+.++.+ +.+.++.+++++|+.++... . .. .....+++||+++
T Consensus 128 ~~~~s~~~~l~~~~----------~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 197 (419)
T TIGR03467 128 LDDTTVGDWLQAAG----------QSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSE 197 (419)
T ss_pred cCCCCHHHHHHHcC----------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHH
Confidence 45789999988642 355666767776 57789999999999875421 1 11 1135677899988
Q ss_pred HHHH-Hhc-----cCCeecCceeEEEEecCCeeEEEE-cCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhc
Q 017808 105 VINT-LAK-----GLDIRLGHRVTKITRHYIGVKVTV-EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 177 (365)
Q Consensus 105 L~~~-L~~-----~l~I~l~~~V~~I~~~~~~v~V~~-~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~ 177 (365)
++.. |++ +.+|++|++|++|..++++|.+.. .+|+++.||+||+|+|++++++.. |. +.+.++++++
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll----~~--~~~~~~l~~~ 271 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLL----PG--EDLGALLTAL 271 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhC----CC--chHHHHHhhc
Confidence 7644 654 557999999999999988876543 467789999999999999987531 22 1456788999
Q ss_pred CCccccEEEEEcCCCCCCCCCcceeecCCCCceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhc
Q 017808 178 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL 257 (365)
Q Consensus 178 ~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~ 257 (365)
+|+++.++++.|++++|.+.+.++..... ....+.....++...++..++.+ +..+..++++++.+.++++|+++|
T Consensus 272 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~ 347 (419)
T TIGR03467 272 GYSPITTVHLRLDRAVRLPAPMVGLVGGL--AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAF 347 (419)
T ss_pred CCcceEEEEEEeCCCcCCCCCeeeecCCc--eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998555555654322 11122222222223455555543 456778899999999999999999
Q ss_pred CCC--CCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 258 PDA--SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 258 ~~~--~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
|.. ..+....+.+|.+.. |.+ .+|.. ...+.+.+|.++||||||+++++++++||||+.||.+||++|++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~-----~~~-~~g~~-~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 348 PRVAGAKPLWARVIKEKRAT-----FAA-TPGLN-RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CccccCCccceEEEEccCCc-----ccc-CCccc-ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 863 345555666775422 322 23332 23344567889999999999998889999999999999998863
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=5.4e-28 Score=234.70 Aligned_cols=279 Identities=20% Similarity=0.261 Sum_probs=213.1
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhcccc-----c-c---------c------
Q 017808 33 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK-----E-E---------L------ 90 (365)
Q Consensus 33 ~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~-----~-~---------~------ 90 (365)
..|+|+.+|+++. +++++.+.++.+ +.++|+.+++++|+.+... . . .
T Consensus 134 ~~d~s~~e~l~~~-----------~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 202 (462)
T TIGR00562 134 GKDESVEEFVRRR-----------FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQ 202 (462)
T ss_pred CCCcCHHHHHHHh-----------cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCc
Confidence 4578999998863 456677777777 6789999999999875220 0 0 0
Q ss_pred ------c---CCC-ceeccCChHHHHHHHhccC---CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhc
Q 017808 91 ------L---PGG-HGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 157 (365)
Q Consensus 91 ------~---~g~-~~~~~gG~~~L~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~ 157 (365)
+ .+. ..++.||+++|+++|++.+ +|++|++|++|.+++++|.|++.+|+++.||+||+|+|++.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ 282 (462)
T TIGR00562 203 GSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG 282 (462)
T ss_pred cccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH
Confidence 0 011 3568999999999999876 49999999999999999999998888899999999999999874
Q ss_pred CCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCCC-CCcceeecCCCC---c-eeEeeec----cCCCCCceEEEE
Q 017808 158 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSY---G-CSYFLNL----HKATGHCVLVYM 228 (365)
Q Consensus 158 ~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~~~---~-~~~~~~~----~~~~g~~~l~~~ 228 (365)
. .|++|+...++++++.|+++.++.+.|++++|+. ...+|++.+... . ...+++. ..+.+..+++++
T Consensus 283 l----l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~ 358 (462)
T TIGR00562 283 L----LSELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAY 358 (462)
T ss_pred H----hcccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEE
Confidence 3 3668888889999999999999999999998853 355777765431 1 1122221 123456688888
Q ss_pred ecchhhHHHhcCCHHHHHHHHHHHHHHhcCCCCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHH----HHhCCCCCEE
Q 017808 229 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYE----RLRIPVDNLF 304 (365)
Q Consensus 229 ~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~----~l~~p~~~l~ 304 (365)
+.+..+..+.+++++++++.++++|+++++...+|....+++|. ++ |+.+.+|+. ...+ .+..+.++|+
T Consensus 359 ~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~---~a---~P~~~~g~~-~~~~~i~~~l~~~~~~l~ 431 (462)
T TIGR00562 359 IGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWH---RA---IPQYHVGHD-QRLKEARELLESAYPGVF 431 (462)
T ss_pred eCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEcc---cc---CCCCCCChH-HHHHHHHHHHHhhCCCEE
Confidence 88877777888999999999999999999864458889999994 33 444445652 2222 3445567999
Q ss_pred EeccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 305 FAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 305 ~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
+||+++.. .++++|+.||.++|++|++.+
T Consensus 432 l~G~~~~g---~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 432 LTGNSFEG---VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred EeccccCC---CcHHHHHHHHHHHHHHHHHhh
Confidence 99999874 489999999999999998764
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.96 E-value=1.6e-27 Score=231.24 Aligned_cols=278 Identities=15% Similarity=0.195 Sum_probs=204.1
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhccc-c---c----c-----------cc-
Q 017808 33 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD-K---E----E-----------LL- 91 (365)
Q Consensus 33 ~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~-~---~----~-----------~~- 91 (365)
..++|+.+++++. +++++.+.++.+ +.++|+++++++|+.+.. . . . ..
T Consensus 143 ~~~~sv~~~l~~~-----------~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 211 (463)
T PRK12416 143 TKDTSLALFLESF-----------LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQ 211 (463)
T ss_pred CCCCCHHHHHHHh-----------cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccC
Confidence 3578999998863 455677777777 578899999999986411 1 0 0 00
Q ss_pred -C--CCceeccCChHHHHHHHhccC---CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccCC
Q 017808 92 -P--GGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 165 (365)
Q Consensus 92 -~--g~~~~~~gG~~~L~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~ 165 (365)
. ....+++|||++|+++|++.+ +|++|++|++|+.++++|.|++.+|+++.||+||+|+|++++.. +.+.|+
T Consensus 212 ~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~ 289 (463)
T PRK12416 212 SAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNE 289 (463)
T ss_pred CCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcc
Confidence 1 124578999999999999987 49999999999999999999988888899999999999999864 445665
Q ss_pred CcHHHHHHHhhcCCccccEEEEEcCCCCCC-CCCcceeecCCCCce----eEeee-ccC--CCCCceEEE-Eec--chhh
Q 017808 166 LPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSYGC----SYFLN-LHK--ATGHCVLVY-MPA--GQLA 234 (365)
Q Consensus 166 Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~-~~~~~g~~~~~~~~~----~~~~~-~~~--~~g~~~l~~-~~~--g~~a 234 (365)
++ +.++++.+.++.++++.|+.++|. +...+|++.+..... ..+.+ .++ ..+..+++. ++. ++.+
T Consensus 290 l~----~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (463)
T PRK12416 290 LN----EQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVY 365 (463)
T ss_pred hh----HHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCc
Confidence 54 456788899999999999988773 335678876543311 11221 111 123344444 443 3567
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCccEEEeccCCCCCCCCCcCCCCCCCCCHH---HHHHHhCCCCCEEEeccccC
Q 017808 235 RDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHD---LYERLRIPVDNLFFAGEATS 311 (365)
Q Consensus 235 ~~~~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~---~~~~l~~p~~~l~~aG~~~~ 311 (365)
..+..++++++.+.++++|+++||...+|..+.+++|.. +.+.| .+++... ..+.+..+.++|++||+++.
T Consensus 366 ~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~---a~P~y---~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~ 439 (463)
T PRK12416 366 ETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKD---LMPKY---HLEHNQAVQSLQEKMMNLYPNIYLAGASYY 439 (463)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccc---cCCCc---CcCHHHHHHHHHHHHHhhCCCeEEeccccc
Confidence 778889999999999999999998766899999999954 33333 3444221 12345556689999999987
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 312 MSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 312 ~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
. .+|++|+.||+++|++|++.+
T Consensus 440 g---~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 440 G---VGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred c---ccHHHHHHHHHHHHHHHHHHh
Confidence 6 369999999999999998764
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=99.95 E-value=1.8e-26 Score=225.92 Aligned_cols=280 Identities=19% Similarity=0.230 Sum_probs=205.0
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhccccc-----------------ccc---
Q 017808 33 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE-----------------ELL--- 91 (365)
Q Consensus 33 ~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~~-----------------~~~--- 91 (365)
..|+|+.+|+++. +++++.+.++.+ +.++|+.+++++|+...... ...
T Consensus 143 ~~~~sv~~~l~~~-----------~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~ 211 (496)
T PLN02576 143 GREESVGEFVRRH-----------LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAK 211 (496)
T ss_pred CCCCcHHHHHHHh-----------cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhc
Confidence 4678999999863 566788888887 68899999999999753210 000
Q ss_pred ---------------C-CCceeccCChHHHHHHHhccCC---eecCceeEEEEecCCe-eEEEE--cCC-cEEEcCEEEE
Q 017808 92 ---------------P-GGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIG-VKVTV--EGG-KTFVADAVVV 148 (365)
Q Consensus 92 ---------------~-g~~~~~~gG~~~L~~~L~~~l~---I~l~~~V~~I~~~~~~-v~V~~--~~g-~~~~ad~VI~ 148 (365)
. +..+++++||++|+++|++.+. |++|++|++|++.+++ |.|++ .+| +++.||+||+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~ 291 (496)
T PLN02576 212 KNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVM 291 (496)
T ss_pred ccccccccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEE
Confidence 0 1246789999999999999774 9999999999998886 65544 355 3699999999
Q ss_pred ecChhhhhcCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCCC-------CCcceeecCCCCc---e-eEeee-c
Q 017808 149 AVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-------VEFLGVVSDTSYG---C-SYFLN-L 216 (365)
Q Consensus 149 t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-------~~~~g~~~~~~~~---~-~~~~~-~ 216 (365)
|+|+.+++... +++++...++++++.|.++.+|.+.|++++|.. ...+|.+.+.... . ..+.+ .
T Consensus 292 a~P~~~l~~ll----~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~ 367 (496)
T PLN02576 292 TAPLYVVSEML----RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSL 367 (496)
T ss_pred CCCHHHHHHHh----cccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCc
Confidence 99999988542 334566788999999999999999999998853 2355665433211 1 12221 2
Q ss_pred cC---CCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcCCC--CCccEEEeccCCCCCCCCCcCCCCCCCCCHH
Q 017808 217 HK---ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPIQYLVSHWGTDANSLGSYSYDTVGKSHD 291 (365)
Q Consensus 217 ~~---~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~~--~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~ 291 (365)
.+ +.+..+++.|+.+..+..+.+++++++.+.++++|++++|.. ..|.....++|.. +++.+.+|+..
T Consensus 368 ~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~------a~P~~~~g~~~- 440 (496)
T PLN02576 368 FPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK------AIPQYLLGHLD- 440 (496)
T ss_pred CCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc------ccCCCCcCHHH-
Confidence 11 345557788998887788888999999999999999999852 3677777889953 33333455432
Q ss_pred HHHHHh---CCC--CCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 292 LYERLR---IPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 292 ~~~~l~---~p~--~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
..+.+. .+. ++|++||+++.. .++++|+.||.++|++|+..+.
T Consensus 441 ~~~~~~~~l~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 441 VLEAAEKMEKDLGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred HHHHHHHHHHhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 222222 223 699999999985 4899999999999999988753
No 16
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.95 E-value=7.2e-26 Score=219.15 Aligned_cols=275 Identities=21% Similarity=0.249 Sum_probs=197.3
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhcccc--------cc---------c----
Q 017808 33 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--------EE---------L---- 90 (365)
Q Consensus 33 ~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~--------~~---------~---- 90 (365)
..|+|+.+++.+. +++.+++.++.+ +.++|+++++++|+..... +. .
T Consensus 138 ~~~~s~~e~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (451)
T PRK11883 138 GQDQSVGAFFRRR-----------FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEK 206 (451)
T ss_pred CCCcCHHHHHHHh-----------ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccC
Confidence 3578999998763 455677777777 5788999999999865320 00 0
Q ss_pred -cCCC-ceeccCChHHHHHHHhccCC---eecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccCC
Q 017808 91 -LPGG-HGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 165 (365)
Q Consensus 91 -~~g~-~~~~~gG~~~L~~~L~~~l~---I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~ 165 (365)
..+. ..++++||++|+++|++.++ |++|++|++|..++++|.|++.+|+++.||+||+|+|++++... .+.
T Consensus 207 ~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~~~-- 282 (451)
T PRK11883 207 KKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FVA-- 282 (451)
T ss_pred CCCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--ccC--
Confidence 0122 34789999999999998774 99999999999999999999989999999999999999998854 222
Q ss_pred CcHHHHHHHhhcCCccccEEEEEcCCCCCCCCCcceeecCC--CCc-eeE-eee-c---cCCCCCceEEEEecchhhHHH
Q 017808 166 LPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT--SYG-CSY-FLN-L---HKATGHCVLVYMPAGQLARDI 237 (365)
Q Consensus 166 Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~--~~~-~~~-~~~-~---~~~~g~~~l~~~~~g~~a~~~ 237 (365)
+...++++++.|+++.|+++.|+++++.....++++.+. ... ... +.+ . ..+.+..++..+.+.......
T Consensus 283 --~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~ 360 (451)
T PRK11883 283 --PPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAV 360 (451)
T ss_pred --hhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchh
Confidence 234678899999999999999999864333445555432 111 111 221 1 123344444444444334445
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCC---CCCEEEeccccCCCC
Q 017808 238 EKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP---VDNLFFAGEATSMSY 314 (365)
Q Consensus 238 ~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p---~~~l~~aG~~~~~~~ 314 (365)
..++++++++.++++|++++|...+|....+++|.. +|+.+.+++ ......+..+ +++|||||+++.+
T Consensus 361 ~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~------a~p~~~~~~-~~~~~~l~~~l~~~~~l~~aG~~~~g-- 431 (451)
T PRK11883 361 VDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKE------AMPQYGVGH-IERVAELRAGLPHYPGLYVAGASFEG-- 431 (451)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCc------cCCCCCccH-HHHHHHHHHhhhhCCCEEEECcccCC--
Confidence 678999999999999999998655778888999953 344445555 2333333333 5699999999864
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 017808 315 PGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 315 ~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++++|+.||+++|++|++
T Consensus 432 -~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 432 -VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred -ccHHHHHHHHHHHHHHHHh
Confidence 4799999999999999875
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.94 E-value=2.3e-25 Score=215.59 Aligned_cols=278 Identities=19% Similarity=0.237 Sum_probs=187.8
Q ss_pred CCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhccccc--ccc---CCCc-eeccCC-hHHH
Q 017808 34 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE--ELL---PGGH-GLMVRG-YLPV 105 (365)
Q Consensus 34 ~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~~--~~~---~g~~-~~~~gG-~~~L 105 (365)
+++|+.+++++. .+++.+.+.++.+ ..+.++.+++++|+.++... ..+ .+.. .+..|| ++.+
T Consensus 146 ~~~s~~~~l~~~----------~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l 215 (453)
T TIGR02731 146 DKYTVTEWLRKQ----------GVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERL 215 (453)
T ss_pred ccCCHHHHHHHc----------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHH
Confidence 578999988752 3444555555555 46778899999999875421 111 1111 123333 3445
Q ss_pred HHHHhc-----cCCeecCceeEEEEecCCe-e-EEEEcCCc-----EEEcCEEEEecChhhhhcCCccccCCCc-HHHHH
Q 017808 106 INTLAK-----GLDIRLGHRVTKITRHYIG-V-KVTVEGGK-----TFVADAVVVAVPLGVLKARTIKFEPRLP-DWKEA 172 (365)
Q Consensus 106 ~~~L~~-----~l~I~l~~~V~~I~~~~~~-v-~V~~~~g~-----~~~ad~VI~t~p~~~l~~~~i~f~p~Lp-~~~~~ 172 (365)
++.|.+ +.+|++|++|++|...+++ + .|++.+|+ ++.||+||+|+|++.+.+.+ .+.++ ....+
T Consensus 216 ~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL---~~~~~~~~~~~ 292 (453)
T TIGR02731 216 CQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLL---PQPWKQMPFFQ 292 (453)
T ss_pred HHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhC---chhhhcCHHHH
Confidence 555543 5579999999999875554 4 36666665 78999999999999876431 12222 23446
Q ss_pred HHhhcCCccccEEEEEcCCCCCCCCCcceeecC-CCCceeEee-e----ccCCCCCceEEEEecchhhHHHhcCCHHHHH
Q 017808 173 AIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSD-TSYGCSYFL-N----LHKATGHCVLVYMPAGQLARDIEKMSDEAAA 246 (365)
Q Consensus 173 ai~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~-~~~~~~~~~-~----~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~ 246 (365)
.++++.++++.|+++.|++++|... +.+.+ ......... + ...+.+..++.+++. .+..+..+++++++
T Consensus 293 ~~~~~~~~~~~~v~l~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ee~~ 367 (453)
T TIGR02731 293 KLNGLEGVPVINVHIWFDRKLTTVD---HLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFA--PAADWIGRSDEEII 367 (453)
T ss_pred HhhcCCCCcEEEEEEEEccccCCCC---ceeeeCCCcceeecchhhhChhhcCCCCeEEEEEec--ChhhhhcCCHHHHH
Confidence 6777888899999999999988432 22211 111111010 0 011223334444333 23567889999999
Q ss_pred HHHHHHHHHhcCCC---CCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHHH
Q 017808 247 NFAFTQLKKILPDA---SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFS 323 (365)
Q Consensus 247 ~~~~~~L~~~~~~~---~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~ 323 (365)
+.++++|+++||.. .++.++..++|.++||+. |. ..|| .....+.+.+|++||||||++++..|+|+||||++
T Consensus 368 ~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg-~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~ 443 (453)
T TIGR02731 368 DATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YK-TTPG-RQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVL 443 (453)
T ss_pred HHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--ec-cCCC-ChhhCccccCccCCEEEeehhccCcccccHHHHHH
Confidence 99999999999852 257778888999999984 42 4466 34566778899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 017808 324 TGLMAAEDCR 333 (365)
Q Consensus 324 SG~~aA~~i~ 333 (365)
||++||++|+
T Consensus 444 SG~~AA~~v~ 453 (453)
T TIGR02731 444 SGKLCAQAIV 453 (453)
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 18
>PLN02612 phytoene desaturase
Probab=99.94 E-value=4e-25 Score=217.82 Aligned_cols=283 Identities=18% Similarity=0.199 Sum_probs=183.8
Q ss_pred CCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhcccc--ccccC---CC-ceeccCCh-HHH
Q 017808 34 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--EELLP---GG-HGLMVRGY-LPV 105 (365)
Q Consensus 34 ~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~--~~~~~---g~-~~~~~gG~-~~L 105 (365)
+++|+.+++++. .+.+.+.+.++.+ +.+.++.+++++|+.+++. ...+. +. ..++.|+. +.|
T Consensus 241 d~~Sv~e~l~~~----------~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l 310 (567)
T PLN02612 241 DGLSVKEWMRKQ----------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERL 310 (567)
T ss_pred CcCcHHHHHHhc----------CCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHH
Confidence 468899988753 2333444444444 4567788999999987552 11111 21 22344443 455
Q ss_pred HHHHhc-----cCCeecCceeEEEEecCCe--eEEEEcCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhcC
Q 017808 106 INTLAK-----GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG 178 (365)
Q Consensus 106 ~~~L~~-----~l~I~l~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~ 178 (365)
++.|++ +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..++.+.-... .+....+.++++.
T Consensus 311 ~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~~~~l~~l~ 388 (567)
T PLN02612 311 CMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPYFKKLDKLV 388 (567)
T ss_pred HHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHHHHHHHhcC
Confidence 555544 5579999999999987666 347778898999999999999999875321111 1223445667788
Q ss_pred CccccEEEEEcCCCCCCCCCcceeecCCCCceeEeeec------cCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHH
Q 017808 179 VGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNL------HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ 252 (365)
Q Consensus 179 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~------~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~ 252 (365)
+.++.++++.|++++|.... +.+.........+.+. +.+.+..++.+. .+ .+.+|..++++++++.++++
T Consensus 389 ~~~v~~v~l~~dr~~~~~~~--~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~-~~-~a~~~~~~sdeei~e~vl~~ 464 (567)
T PLN02612 389 GVPVINVHIWFDRKLKNTYD--HLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELV-FA-PAEEWISRSDEDIIDATMKE 464 (567)
T ss_pred CCCeEEEEEEECcccCCCCC--ceeecCCCCceeehhhhhcchhhcCCCCeEEEEE-EE-cChhhhcCCHHHHHHHHHHH
Confidence 88899999999999984322 1222211111111110 112344444433 33 46788899999999999999
Q ss_pred HHHhcCCCCCc----cEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHHHHHHHH
Q 017808 253 LKKILPDASSP----IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 328 (365)
Q Consensus 253 L~~~~~~~~~p----~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~a 328 (365)
|+++||....+ .......+...|++. |.. .++. ...++.+.+|++|||||||+|..+|+++|+||+.||++|
T Consensus 465 L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~--~~~-~pg~-~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~A 540 (567)
T PLN02612 465 LAKLFPDEISADQSKAKILKYHVVKTPRSV--YKT-VPNC-EPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLC 540 (567)
T ss_pred HHHHCCcccccccCCceEEEEEEeccCCce--EEe-CCCC-cccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHH
Confidence 99999863221 222333444455532 322 2332 123455678999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 017808 329 AEDCRMRV 336 (365)
Q Consensus 329 A~~i~~~l 336 (365)
|++|++.+
T Consensus 541 A~~I~~~~ 548 (567)
T PLN02612 541 AQSIVQDY 548 (567)
T ss_pred HHHHHHHh
Confidence 99999875
No 19
>PRK07233 hypothetical protein; Provisional
Probab=99.92 E-value=3.5e-24 Score=206.31 Aligned_cols=278 Identities=19% Similarity=0.182 Sum_probs=189.0
Q ss_pred CCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhccccc---ccc------CCCceeccCChH
Q 017808 34 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE---ELL------PGGHGLMVRGYL 103 (365)
Q Consensus 34 ~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~~---~~~------~g~~~~~~gG~~ 103 (365)
.++|+.+++.+.+ +.++++.++.+ +...++.+++++|+.++... ... .....+++||++
T Consensus 130 ~~~s~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 198 (434)
T PRK07233 130 DKVPAEEWLRRWS-----------GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFA 198 (434)
T ss_pred ccccHHHHHHHhc-----------CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHH
Confidence 4688888887632 33455556665 57789999999999764321 000 123557899999
Q ss_pred HHHHHHhcc-----CCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhcC
Q 017808 104 PVINTLAKG-----LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG 178 (365)
Q Consensus 104 ~L~~~L~~~-----l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~ 178 (365)
.|+++|++. .+|++|++|++|..+++++.+.+.+|+++.||+||+|+|+..+... .|++++...++++++.
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~l----l~~~~~~~~~~~~~~~ 274 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARL----VPDLPADVLARLRRID 274 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhh----cCCCcHHHHhhhcccC
Confidence 999999874 4699999999999988887755567778999999999999988743 2667777778889999
Q ss_pred CccccEEEEEcCCCCCCCCCcceeecCC-CCce-eEee-ecc---CCCCCceE--EEEecchhhHHHhcCCHHHHHHHHH
Q 017808 179 VGIENKIIMHFDKVFWPNVEFLGVVSDT-SYGC-SYFL-NLH---KATGHCVL--VYMPAGQLARDIEKMSDEAAANFAF 250 (365)
Q Consensus 179 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~-~~~~-~~~~-~~~---~~~g~~~l--~~~~~g~~a~~~~~~~~~e~~~~~~ 250 (365)
+.+..++++.|+++.++ .+.-..... .... .... +.. .+++..++ .+++.+.. .+..++++++++.++
T Consensus 275 ~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 350 (434)
T PRK07233 275 YQGVVCMVLKLRRPLTD--YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFL 350 (434)
T ss_pred ccceEEEEEEecCCCCC--CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHH
Confidence 98888899999987532 110011111 0111 1111 111 12344443 33444332 355678999999999
Q ss_pred HHHHHhcCCCC--CccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHHHHHHHH
Q 017808 251 TQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 328 (365)
Q Consensus 251 ~~L~~~~~~~~--~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~a 328 (365)
++|++++|... .+... +|.+.+++.+.| .+|. ....+.+.+|++||||||+++...+.++|++|+.||++|
T Consensus 351 ~~L~~~~p~~~~~~~~~~---~~~r~~~a~~~~---~~g~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~a 423 (434)
T PRK07233 351 SYLRKMFPDFDRDDVRAV---RISRAPYAQPIY---EPGY-LDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRV 423 (434)
T ss_pred HHHHHhCCCCChhheeeE---EEEEeccccccc---cCch-hhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHH
Confidence 99999998532 23343 344446665543 3442 234455677889999999965555567999999999999
Q ss_pred HHHHHHHHH
Q 017808 329 AEDCRMRVL 337 (365)
Q Consensus 329 A~~i~~~l~ 337 (365)
|++|++.++
T Consensus 424 A~~i~~~~~ 432 (434)
T PRK07233 424 AREILEDRR 432 (434)
T ss_pred HHHHhhhhc
Confidence 999988764
No 20
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.92 E-value=2.5e-23 Score=195.16 Aligned_cols=277 Identities=22% Similarity=0.254 Sum_probs=205.6
Q ss_pred hCCCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhccc-cc-------ccc----------
Q 017808 31 EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD-KE-------ELL---------- 91 (365)
Q Consensus 31 ~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~-~~-------~~~---------- 91 (365)
....|.|+++|+++ ++++++++.++.| +.++|+++++++|+..+. .. ...
T Consensus 130 ~~~~d~sv~~f~r~-----------~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~ 198 (444)
T COG1232 130 EPKQDISVGEFIRR-----------RFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLP 198 (444)
T ss_pred CCCCCcCHHHHHHH-----------HHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCc
Confidence 45678999999987 5788999999998 799999999999998422 10 000
Q ss_pred -----CCCceeccCChHHHHHHHhccC--CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccC
Q 017808 92 -----PGGHGLMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEP 164 (365)
Q Consensus 92 -----~g~~~~~~gG~~~L~~~L~~~l--~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p 164 (365)
.+...+++||+++|+++|++.+ +|+++++|++|.++.+++.+.+.+|+.+.||.||+|+|++.+...+ +
T Consensus 199 ~~~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll----~ 274 (444)
T COG1232 199 KQSLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLL----G 274 (444)
T ss_pred ccccccccccccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHc----C
Confidence 1124568999999999999976 4889999999999988888888899999999999999999987542 2
Q ss_pred CCcHHHHHHHhhcCCccccEEEEEcCCCCC-CCCCcceeecCCCCc----eeEeeecc---CCCCCceEEEEecchhhHH
Q 017808 165 RLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG----CSYFLNLH---KATGHCVLVYMPAGQLARD 236 (365)
Q Consensus 165 ~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w-~~~~~~g~~~~~~~~----~~~~~~~~---~~~g~~~l~~~~~g~~a~~ 236 (365)
+ ........++.+.++..|.+.++++-- ...+.+|++.++... +.+..+.. .+.|+.++.+++.......
T Consensus 275 ~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~ 352 (444)
T COG1232 275 D--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDES 352 (444)
T ss_pred C--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcc
Confidence 2 223467888888777778888887522 233456666543322 22222332 2456778888887776666
Q ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCccEEEeccCCCCCCCCCcCCCCCCCCCHHH---HHHHhCCCCCEEEeccccCCC
Q 017808 237 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL---YERLRIPVDNLFFAGEATSMS 313 (365)
Q Consensus 237 ~~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~---~~~l~~p~~~l~~aG~~~~~~ 313 (365)
...++|||+++.++++|.++++...+|..+.++|| +++.+ .+.+|+.... +..+..-++++..+|.+...
T Consensus 353 ~~~~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~---~~~~P---qY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g- 425 (444)
T COG1232 353 VSTMSDEELVAAVLDDLKKLGGINGDPVFVEVTRW---KYAMP---QYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG- 425 (444)
T ss_pred hhccCHHHHHHHHHHHHHHHcCcCcchhheeeeec---cccCC---ccchhHHHHHHHHHHhhccccCCeEEeccCCCC-
Confidence 77889999999999999999988778888899999 33444 3456653222 22333323689999999865
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 017808 314 YPGSVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 314 ~~g~v~gA~~SG~~aA~~i~ 333 (365)
-++++++.+|..||++++
T Consensus 426 --~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 426 --VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred --CCchHHHHHHHHHHHHhh
Confidence 279999999999999875
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.88 E-value=3.4e-21 Score=188.17 Aligned_cols=281 Identities=16% Similarity=0.068 Sum_probs=188.1
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhcccc--cc---ccC-CCceeccCChHH-
Q 017808 33 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--EE---LLP-GGHGLMVRGYLP- 104 (365)
Q Consensus 33 ~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~--~~---~~~-g~~~~~~gG~~~- 104 (365)
..++|+.++++++. ..+++++.+|.+ +.+.++.+++++|+.++.. .. ... +...+++||++.
T Consensus 227 ~d~~sv~~~l~r~~----------g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~ 296 (569)
T PLN02487 227 LDDISFSDWFTSHG----------GTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVR 296 (569)
T ss_pred ccCCcHHHHHHHhC----------CCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHH
Confidence 34689999988643 233478888888 6788999999999987542 11 111 225677999995
Q ss_pred HHHHHhc-----cCCeecCceeEEEEecC--Ce---e-EEEE---cCCcEEEcCEEEEecChhhhhcCCccccCCCcHH-
Q 017808 105 VINTLAK-----GLDIRLGHRVTKITRHY--IG---V-KVTV---EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW- 169 (365)
Q Consensus 105 L~~~L~~-----~l~I~l~~~V~~I~~~~--~~---v-~V~~---~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~- 169 (365)
|++.+++ +.+|+++++|++|..+. ++ + .|++ .+++++.||+||+|+|+..++++. |+..+.
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Ll----p~~~~~~ 372 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLL----PEQWREY 372 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhC----Cchhhcc
Confidence 8887765 45799999999999863 32 3 3555 344578999999999999987542 443221
Q ss_pred -HHHHHhhcCCccccEEEEEcCCCCCCCC---------Ccceeec----CCCCceeEee---e----ccCCCCCceEEEE
Q 017808 170 -KEAAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGVVS----DTSYGCSYFL---N----LHKATGHCVLVYM 228 (365)
Q Consensus 170 -~~~ai~~~~~~~~~kv~l~~~~~~w~~~---------~~~g~~~----~~~~~~~~~~---~----~~~~~g~~~l~~~ 228 (365)
..+.+.++...++..++|.|+++.-... ...|... .+....++.+ + .+.......+-++
T Consensus 373 ~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~v 452 (569)
T PLN02487 373 EFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAV 452 (569)
T ss_pred HHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEE
Confidence 2467778878888889999997543111 1122110 1111111111 0 1111112455555
Q ss_pred ecchhhHHHhcCCHHHHHHHHHHHHHHhcCCCC--CccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEe
Q 017808 229 PAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFA 306 (365)
Q Consensus 229 ~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~~~--~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~a 306 (365)
+.. +..+..++++++++.++++|+++||... ++.+..+.+..+.- |. ..||.. ..++..++|++|||+|
T Consensus 453 is~--a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at-----~~-~~pg~~-~~RP~~~T~~~nl~LA 523 (569)
T PLN02487 453 LTP--GDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSL-----YR-EAPGMD-PFRPDQKTPISNFFLA 523 (569)
T ss_pred EcC--CccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCce-----ec-cCCCcc-ccCCCCCCCCCCEEEe
Confidence 553 3567889999999999999999998632 34444444444433 32 234431 2346668889999999
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 307 GEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 307 G~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
||||..+|+.++|||++||.+||+.|++..
T Consensus 524 GD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 524 GSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988764
No 22
>PRK07208 hypothetical protein; Provisional
Probab=99.88 E-value=8.5e-21 Score=185.04 Aligned_cols=280 Identities=18% Similarity=0.114 Sum_probs=185.4
Q ss_pred CCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhccccccc-----------c---------
Q 017808 33 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKEEL-----------L--------- 91 (365)
Q Consensus 33 ~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~~~~-----------~--------- 91 (365)
.+++|+.+++.+. +++++.+.++.+ ..++|+.+++++|+.+.+.... +
T Consensus 130 ~~~~s~~e~l~~~-----------~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (479)
T PRK07208 130 KEEDSFEDWVINR-----------FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRR 198 (479)
T ss_pred CCCCCHHHHHHHh-----------hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhccccccc
Confidence 3579999998863 566777777776 5788999999999975331100 0
Q ss_pred --------CCCceeccCChHHHHHHHhcc-----CCeecCceeEEEEecCCee-E-EEE--cCCc--EEEcCEEEEecCh
Q 017808 92 --------PGGHGLMVRGYLPVINTLAKG-----LDIRLGHRVTKITRHYIGV-K-VTV--EGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 92 --------~g~~~~~~gG~~~L~~~L~~~-----l~I~l~~~V~~I~~~~~~v-~-V~~--~~g~--~~~ad~VI~t~p~ 152 (365)
.....+++||+++|+++|++. .+|++|++|++|..+++++ . ++. .+|+ ++.||+||+|+|+
T Consensus 199 ~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 199 NKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred CCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 012345689999999999874 4699999999999987763 2 332 2453 5899999999999
Q ss_pred hhhhcCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCCCCCCcceeecCCCCc---eeEeee---ccCCCCCc-eE
Q 017808 153 GVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG---CSYFLN---LHKATGHC-VL 225 (365)
Q Consensus 153 ~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~---~~~~~~---~~~~~g~~-~l 225 (365)
..+... +.|++|+...++++++++.++.++++.|+++.+.... ..++.+.... ...+.+ ...|.|.. .+
T Consensus 279 ~~l~~~---l~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l 354 (479)
T PRK07208 279 RELVAA---LDPPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDN-WIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWL 354 (479)
T ss_pred HHHHHh---cCCCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCc-eEEecCCCCccceecccccCCcccCCCCCceEE
Confidence 988743 2366888888889999999999999999987542211 1222221110 111111 11234442 22
Q ss_pred E-EEecchhhHHHhcCCHHHHHHHHHHHHHHhcCC-CCCccEEEeccCCCCCCCCCcCCCCCCCCCHHH--HHHHhCCCC
Q 017808 226 V-YMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL--YERLRIPVD 301 (365)
Q Consensus 226 ~-~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~-~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~--~~~l~~p~~ 301 (365)
. .+... .......++++++++.++++|+++... ...+....+.+| +++.+.| .+++.... ...+.++.+
T Consensus 355 ~~~~~~~-~~~~~~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~---~~a~P~y---~~~~~~~~~~~~~~~~~~~ 427 (479)
T PRK07208 355 GLEYFCF-EGDDLWNMSDEDLIALAIQELARLGLIRPADVEDGFVVRV---PKAYPVY---DGTYERNVEIIRDLLDHFP 427 (479)
T ss_pred EEEEEcc-CCCccccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEe---cCcccCC---CchHHHHHHHHHHHHHhcC
Confidence 2 12221 122355789999999999999997322 334566667777 3344433 34442221 122446678
Q ss_pred CEEEeccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 017808 302 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 302 ~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
||++||+.....| .++++|+.||.++|++|++.
T Consensus 428 ~l~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 428 NLHLVGRNGMHRY-NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred Cceeecccccccc-CChhHHHHHHHHHHHHHhcC
Confidence 9999998866554 49999999999999988765
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.88 E-value=5.4e-21 Score=185.10 Aligned_cols=277 Identities=18% Similarity=0.125 Sum_probs=178.1
Q ss_pred CCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhcccc--c---cccCC-CceeccCChH---
Q 017808 34 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--E---ELLPG-GHGLMVRGYL--- 103 (365)
Q Consensus 34 ~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~--~---~~~~g-~~~~~~gG~~--- 103 (365)
.++|+.++++++. ..+.+++.+|.+ +.+.++.+++++|+..+.. . ....+ ...+++||++
T Consensus 152 ~~~t~~~~l~~~~----------~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l 221 (474)
T TIGR02732 152 DKISFAEWFLSHG----------GSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYL 221 (474)
T ss_pred ccccHHHHHHHcC----------CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhH
Confidence 4689999988642 334578888888 6788999999999987532 1 11111 2345566644
Q ss_pred --HHHHHHhc-cCCeecCceeEEEEecC--Ce---e-EEEEcCC---cEEEcCEEEEecChhhhhcCCccccCCCc--HH
Q 017808 104 --PVINTLAK-GLDIRLGHRVTKITRHY--IG---V-KVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLP--DW 169 (365)
Q Consensus 104 --~L~~~L~~-~l~I~l~~~V~~I~~~~--~~---v-~V~~~~g---~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp--~~ 169 (365)
.|++.|.+ +.+|+++++|++|..++ ++ + .|.+.+| +++.||+||+|+|+..++++. |+++ ..
T Consensus 222 ~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll----~~~~~~~~ 297 (474)
T TIGR02732 222 TKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLL----PQEWRQFE 297 (474)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhC----ChhhhcCH
Confidence 46667765 56899999999998754 22 3 2445444 568999999999999987542 3322 12
Q ss_pred HHHHHhhcCCccccEEEEEcCCCCCCCC---------Cccee---ecCCCCceeEeee-----c--cCCCCCc-eEEEEe
Q 017808 170 KEAAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGV---VSDTSYGCSYFLN-----L--HKATGHC-VLVYMP 229 (365)
Q Consensus 170 ~~~ai~~~~~~~~~kv~l~~~~~~w~~~---------~~~g~---~~~~~~~~~~~~~-----~--~~~~g~~-~l~~~~ 229 (365)
..+.+.++++.++..|+|.|+++.-... ...+. +........++.+ . +.+.+.. ++.+.+
T Consensus 298 ~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (474)
T TIGR02732 298 EFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVL 377 (474)
T ss_pred HHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEE
Confidence 4567888898999999999987533110 00110 0001100111111 0 1112222 344444
Q ss_pred cchhhHHHhcCCHHHHHHHHHHHHHHhcCCCC--CccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEec
Q 017808 230 AGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAG 307 (365)
Q Consensus 230 ~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~~~--~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG 307 (365)
.. +..+..++++++++.++++|+++||... ++.+..+.+..+.-|. ..||.. ..++...+|++|||+||
T Consensus 378 ~~--~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~------~~pg~~-~~~P~~~t~~~~l~lAG 448 (474)
T TIGR02732 378 TP--GDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYR------EAPGMD-PFRPDQKTPISNFFLAG 448 (474)
T ss_pred eC--hhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceec------cCCCCc-ccCCCCCCCCCCeEEec
Confidence 43 3467779999999999999999998632 3444444444332222 234442 23455678889999999
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHH
Q 017808 308 EATSMSYPGSVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 308 ~~~~~~~~g~v~gA~~SG~~aA~~i~ 333 (365)
||+..+|+.++|||++||++||+.|+
T Consensus 449 D~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 449 SYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cccccCchHHHhHHHHHHHHHHHHhC
Confidence 99999999999999999999999763
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.81 E-value=6e-18 Score=165.49 Aligned_cols=258 Identities=15% Similarity=0.076 Sum_probs=159.1
Q ss_pred hcCCCCcccChhccc---cccccCCCceeccCChHHHHHHHhccC-----CeecCceeEEEEecCCee-EEEEcCC----
Q 017808 72 WFAADAETISLKSWD---KEELLPGGHGLMVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIGV-KVTVEGG---- 138 (365)
Q Consensus 72 ~~g~~~~~~S~~~~~---~~~~~~g~~~~~~gG~~~L~~~L~~~l-----~I~l~~~V~~I~~~~~~v-~V~~~~g---- 138 (365)
+.+.++++.++.+.. .+....++.++++||+++|+++|++.+ +|++|++|++|..+++++ .|.+.+|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~ 277 (492)
T TIGR02733 198 YSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQE 277 (492)
T ss_pred hccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCc
Confidence 345667788876532 222233457789999999999998744 699999999999887753 2444443
Q ss_pred -cEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhcCCcc-ccEEEEEcCCCC--CCCCCcceeecCCCCceeE-e
Q 017808 139 -KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI-ENKIIMHFDKVF--WPNVEFLGVVSDTSYGCSY-F 213 (365)
Q Consensus 139 -~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~-~~kv~l~~~~~~--w~~~~~~g~~~~~~~~~~~-~ 213 (365)
+++.||+||+|+|+..+.++ ...+.+|+...+.++++++.+ ..++++.+++.. +.....+..+......... .
T Consensus 278 ~~~~~ad~VI~~~~~~~~~~l--l~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 355 (492)
T TIGR02733 278 DLNVKADDVVANLPPQSLLEL--LGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSI 355 (492)
T ss_pred eEEEECCEEEECCCHHHHHHh--cCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceEEEEe
Confidence 57899999999999988742 234677877777888888866 447889998732 1111112222221111110 0
Q ss_pred ---eeccCCCCCceEEEEecchh-------hHHHhcCCHHHHHHHHHHHHHHhcCCCCCccEEEe----ccCCCCCC-CC
Q 017808 214 ---LNLHKATGHCVLVYMPAGQL-------ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLV----SHWGTDAN-SL 278 (365)
Q Consensus 214 ---~~~~~~~g~~~l~~~~~g~~-------a~~~~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~----~~W~~~~~-~~ 278 (365)
++...|.|+.++++.+..+. ..+|... ++++.+.+++.|++.+|+..+-+.... ..|.+... ..
T Consensus 356 ~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~-k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~ 434 (492)
T TIGR02733 356 SQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAK-KKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQ 434 (492)
T ss_pred CCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCC
Confidence 11223556667655443322 1223332 566888999999999987544333222 12322111 12
Q ss_pred Cc-CCCCC-CCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 279 GS-YSYDT-VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 279 g~-y~~~~-~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
|+ |.... +.+.........+|++||||||++++++ +++.||+.||+.+|+.|++
T Consensus 435 G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 435 GIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred cEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 33 32211 2221111122257899999999999983 6899999999999999875
No 25
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.80 E-value=3e-19 Score=152.47 Aligned_cols=223 Identities=18% Similarity=0.156 Sum_probs=163.2
Q ss_pred eeccCChHHHHHHHhccCCeecCceeEEEEecCCeeEEEEcCC-cEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHH
Q 017808 96 GLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 174 (365)
Q Consensus 96 ~~~~gG~~~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g-~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai 174 (365)
|.-.-||.+|++.|+..++|+++++|++|.+.++.|++++++| +...+|.||+|+|.+++..++....-.+|...+.++
T Consensus 101 yvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~ 180 (331)
T COG3380 101 YVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAAL 180 (331)
T ss_pred cccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhh
Confidence 4446799999999999999999999999999999999999766 567999999999999987543222346888889999
Q ss_pred hhcCCccccEEEEEcCCCCCCCCCcceeecCCCCceeEee-e-c---cCCCCCceEEEEecchhhHHHhcCCHHHHHHHH
Q 017808 175 DDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL-N-L---HKATGHCVLVYMPAGQLARDIEKMSDEAAANFA 249 (365)
Q Consensus 175 ~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~-~-~---~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~ 249 (365)
..+.|.++..+.+.|+.+--. +..|...+ .....+.. + . +.+.+. ++++-.+.+++....+.++++.+..+
T Consensus 181 a~V~y~Pc~s~~lg~~q~l~~--P~~G~~vd-g~~laWla~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l 256 (331)
T COG3380 181 ADVVYAPCWSAVLGYPQPLDR--PWPGNFVD-GHPLAWLARDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVAL 256 (331)
T ss_pred ccceehhHHHHHhcCCccCCC--CCCCcccC-CCeeeeeeccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHH
Confidence 999999999899999876321 22222221 12222221 1 1 113333 67777777888888888988888777
Q ss_pred HHHHHHhcCC-CCCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHHHHHHHH
Q 017808 250 FTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 328 (365)
Q Consensus 250 ~~~L~~~~~~-~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~a 328 (365)
......+.+. .++|.....++| +|+.+.-....+ .....+-.+||+||||+++ |-+|||+.||..+
T Consensus 257 ~aA~~~~~~~~~~~p~~s~~H~W---rYA~P~~~~~~~-------~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAa 323 (331)
T COG3380 257 RAAAQELDGDRLPEPDWSDAHRW---RYAIPNDAVAGP-------PLDADRELPLYACGDWCAG---GRVEGAVLSGLAA 323 (331)
T ss_pred HHhhhhccCCCCCcchHHHhhcc---ccccccccccCC-------ccccCCCCceeeecccccC---cchhHHHhccHHH
Confidence 7777777774 678888888999 565432211000 1112334579999999987 6899999999999
Q ss_pred HHHHHHH
Q 017808 329 AEDCRMR 335 (365)
Q Consensus 329 A~~i~~~ 335 (365)
|++|+..
T Consensus 324 A~~i~~~ 330 (331)
T COG3380 324 ADHILNG 330 (331)
T ss_pred HHHHHhc
Confidence 9999864
No 26
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.75 E-value=1.4e-16 Score=144.38 Aligned_cols=279 Identities=18% Similarity=0.166 Sum_probs=198.1
Q ss_pred hCCCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhcccc-----ccc------------c-
Q 017808 31 EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK-----EEL------------L- 91 (365)
Q Consensus 31 ~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~-----~~~------------~- 91 (365)
....|+|+.+|+++ +|++++.++++++ +.|+|++|+.++|++.... +.. +
T Consensus 151 ~~~~dESV~sF~~R-----------rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~ 219 (491)
T KOG1276|consen 151 DPSADESVESFARR-----------RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFA 219 (491)
T ss_pred CCCccccHHHHHHH-----------hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34568999999887 4688999999998 6899999999999986321 000 0
Q ss_pred ------------------CCCceeccCChHHHHHHHhccC-----CeecCceeEEEEecC-CeeEEEEc--CCc-EEEcC
Q 017808 92 ------------------PGGHGLMVRGYLPVINTLAKGL-----DIRLGHRVTKITRHY-IGVKVTVE--GGK-TFVAD 144 (365)
Q Consensus 92 ------------------~g~~~~~~gG~~~L~~~L~~~l-----~I~l~~~V~~I~~~~-~~v~V~~~--~g~-~~~ad 144 (365)
....+.++||++.++++|.+.+ .|.++.++..+.... ++|.+++. ++. ....+
T Consensus 220 ~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~ 299 (491)
T KOG1276|consen 220 RKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVS 299 (491)
T ss_pred hhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeecc
Confidence 0113457899999999998866 478888998888654 44766554 443 35567
Q ss_pred EEEEecChhhhhcCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCC-CCCCCCcceeecCCC--C---ce-eEeeec-
Q 017808 145 AVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV-FWPNVEFLGVVSDTS--Y---GC-SYFLNL- 216 (365)
Q Consensus 145 ~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~-~w~~~~~~g~~~~~~--~---~~-~~~~~~- 216 (365)
++..|+|..++.... |.+.+....++..++|.++..|.+.|.++ .-.+...||.+.|.. . .. ..|++.
T Consensus 300 ~~~~t~~~~k~a~ll----~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~ 375 (491)
T KOG1276|consen 300 YDAATLPAVKLAKLL----RGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSML 375 (491)
T ss_pred ccccccchHHhhhhc----cccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeeccc
Confidence 777799999987643 55666667899999999999999999886 334567899987732 1 12 234332
Q ss_pred cC-CCCCceEEEEecchhhHHH--hcCCHHHHHHHHHHHHHHhcCCCCCccEEEeccCCCCCCCCCcCCCCCCCCCHHH-
Q 017808 217 HK-ATGHCVLVYMPAGQLARDI--EKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL- 292 (365)
Q Consensus 217 ~~-~~g~~~l~~~~~g~~a~~~--~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~- 292 (365)
.+ ..+.+.++++++|.+...+ ...+.+++++.+.++|.++++...+|....++-|.+ |.+.+.+|+....
T Consensus 376 Fp~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~------ciPqy~vGh~~~le 449 (491)
T KOG1276|consen 376 FPDRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKN------CIPQYTVGHDDVLE 449 (491)
T ss_pred CCCCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhh------cccceecchHHHHH
Confidence 22 2334477777777665543 346899999999999999998766787777776633 4555567764322
Q ss_pred -HHH-HhCC-CCCEEEeccccCCCCcchhHHHHHHHHHHHHHHH
Q 017808 293 -YER-LRIP-VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 293 -~~~-l~~p-~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~ 333 (365)
.+. +... -.+|++||.+..+ -.+..+|.||+++|.+++
T Consensus 450 ~a~~~l~~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 450 AAKSMLTDSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred HHHHHHHhCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 122 2222 2489999999987 379999999999998764
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.73 E-value=1e-16 Score=157.29 Aligned_cols=260 Identities=16% Similarity=0.106 Sum_probs=157.0
Q ss_pred hhhcCCCCcccChhccc-cccccCCCceeccCChHHHHHHHhc-----cCCeecCceeEEEEecCCe-eEEEEcCCcEEE
Q 017808 70 EGWFAADAETISLKSWD-KEELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFV 142 (365)
Q Consensus 70 ~~~~g~~~~~~S~~~~~-~~~~~~g~~~~~~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~~~~g~~~~ 142 (365)
..++|.++.+.++.+.. ......++.+++.||++.++++|++ +++|+++++|++|..++++ +.|++.+|+++.
T Consensus 185 ~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 185 ALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLD 264 (502)
T ss_pred ceeeccCcccchHHHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEE
Confidence 34677888887765433 2223346677889999999999977 4579999999999988776 568889998899
Q ss_pred cCEEEEecChhhhhcCCccccCCC-cHHHHHHHhhcCCc-cccEEEEEcC---CCCCCCCCccee-e-------------
Q 017808 143 ADAVVVAVPLGVLKARTIKFEPRL-PDWKEAAIDDLGVG-IENKIIMHFD---KVFWPNVEFLGV-V------------- 203 (365)
Q Consensus 143 ad~VI~t~p~~~l~~~~i~f~p~L-p~~~~~ai~~~~~~-~~~kv~l~~~---~~~w~~~~~~g~-~------------- 203 (365)
||+||+|+++..+...++ .+.. ++...+.++++.++ +..++++.++ ++ |+......+ +
T Consensus 265 ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 341 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGH-WPQLAHHTLCFGPRYKELFDEIFR 341 (502)
T ss_pred CCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCeeeEEEEeeccccCc-CCCcCceeEecCcCHHHHHHHHhc
Confidence 999999999877654332 2332 32334556666653 5566888887 33 222111111 1
Q ss_pred ----cCCCCceeEe----eeccCCCCCceEEEEecchhh----HHHhcCCHHHHHHHHHHHHHHh-cCCCCCccEEEe--
Q 017808 204 ----SDTSYGCSYF----LNLHKATGHCVLVYMPAGQLA----RDIEKMSDEAAANFAFTQLKKI-LPDASSPIQYLV-- 268 (365)
Q Consensus 204 ----~~~~~~~~~~----~~~~~~~g~~~l~~~~~g~~a----~~~~~~~~~e~~~~~~~~L~~~-~~~~~~p~~~~~-- 268 (365)
...+...... ++...|.|+.++.+++..+.. ..|.. .++++.+.+++.|++. +|+..+-+....
T Consensus 342 ~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~ 420 (502)
T TIGR02734 342 KGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTF 420 (502)
T ss_pred CCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEc
Confidence 1011111111 112235666666555543221 12332 2567889999999998 877543332222
Q ss_pred --ccCCCCCC-CCCc-CCCC-CCCCCHHHHHH-HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 017808 269 --SHWGTDAN-SLGS-YSYD-TVGKSHDLYER-LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 269 --~~W~~~~~-~~g~-y~~~-~~g~~~~~~~~-l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
..|.+... ..|+ |... ...+....++. ..+|++|||+||++++++ +++.||+.||+.+|+.|++.
T Consensus 421 TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 421 TPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhh
Confidence 12222111 1233 2211 11111111121 246789999999999883 68999999999999999875
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.71 E-value=2e-15 Score=147.56 Aligned_cols=259 Identities=18% Similarity=0.172 Sum_probs=152.6
Q ss_pred cCCC-CcccChhccc-c-ccccCCCceeccCChHHHHHHHhc-----cCCeecCceeEEEEecCCee-EEEEcCCcEEEc
Q 017808 73 FAAD-AETISLKSWD-K-EELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVA 143 (365)
Q Consensus 73 ~g~~-~~~~S~~~~~-~-~~~~~g~~~~~~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v-~V~~~~g~~~~a 143 (365)
++.. +.+.++.... . .....++.+++.||++.|+++|.+ +++|+++++|++|..+++++ .|++.+|+++.|
T Consensus 196 ~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~a 275 (493)
T TIGR02730 196 WSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYA 275 (493)
T ss_pred ccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEc
Confidence 4433 4566554322 1 112335667899999999999977 45799999999999876654 588889988999
Q ss_pred CEEEEecChhhhhcCCccccCCCcHHHHHHHhhcCCc-cccEEEEEcCCCCCCCC-CcceeecC------CCCc-ee-Ee
Q 017808 144 DAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVG-IENKIIMHFDKVFWPNV-EFLGVVSD------TSYG-CS-YF 213 (365)
Q Consensus 144 d~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~-~~~kv~l~~~~~~w~~~-~~~g~~~~------~~~~-~~-~~ 213 (365)
|+||+|+.+..+...++. ...+++.....++++.++ +..++++.++...-++. .....+.+ .... +. ..
T Consensus 276 d~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ 354 (493)
T TIGR02730 276 KRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSI 354 (493)
T ss_pred CEEEECCChHHHHHHhCC-ccccchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEe
Confidence 999999977654332221 122444434455666554 46678999987432210 00011100 0011 11 11
Q ss_pred ----eeccCCCCCceEEEEecchhh-------HHHhcCCHHHHHHHHHHHHHHhcCCCCCccEEEec----cCCCC-CCC
Q 017808 214 ----LNLHKATGHCVLVYMPAGQLA-------RDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVS----HWGTD-ANS 277 (365)
Q Consensus 214 ----~~~~~~~g~~~l~~~~~g~~a-------~~~~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~~----~W~~~-~~~ 277 (365)
++...|.|+.++.+++..+.. .+|... ++++.+.+++.|++++|+..+-+..... .|.+- ...
T Consensus 355 ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~-k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~ 433 (493)
T TIGR02730 355 PTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAK-KEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRD 433 (493)
T ss_pred CCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHH-HHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCC
Confidence 112235677677666542221 123222 5668899999999999874443322221 22211 112
Q ss_pred CCcCCCCCCCCCHHHH--HHHhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 017808 278 LGSYSYDTVGKSHDLY--ERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 278 ~g~y~~~~~g~~~~~~--~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
.|+|...+........ +...+|++|||+||++++++ +++.||+.||+.+|+.|++.
T Consensus 434 ~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 434 SGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhh
Confidence 4555321111100111 12457899999999999883 68999999999999999864
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.14 E-value=1.4e-09 Score=99.95 Aligned_cols=236 Identities=19% Similarity=0.145 Sum_probs=136.4
Q ss_pred CCCceeccCChHHHHHHHhccC-----CeecCceeEEEEecCCee-EEEEcCCcEEEcCEEEEecChhhhhcCCccccCC
Q 017808 92 PGGHGLMVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 165 (365)
Q Consensus 92 ~g~~~~~~gG~~~L~~~L~~~l-----~I~l~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~ 165 (365)
.|+-.|+.|||+.++.++++++ +|.+++.|++|..+++++ -|...||+++.+..||+++.+...-..+ .-.-.
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kL-lp~e~ 331 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKL-LPGEA 331 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHh-CCCcc
Confidence 3445689999999999998854 699999999999888764 4999999999999999999887754222 11224
Q ss_pred CcHHHHHHHhhcCC-ccccE----EEEEcCCCCCCCCCccee---e-cC----------C-------CCc--e----eEe
Q 017808 166 LPDWKEAAIDDLGV-GIENK----IIMHFDKVFWPNVEFLGV---V-SD----------T-------SYG--C----SYF 213 (365)
Q Consensus 166 Lp~~~~~ai~~~~~-~~~~k----v~l~~~~~~w~~~~~~g~---~-~~----------~-------~~~--~----~~~ 213 (365)
||+.- .++++.+ .++.| .|+..+..--...+..++ + .+ + ... . +..
T Consensus 332 LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~l 409 (561)
T KOG4254|consen 332 LPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSL 409 (561)
T ss_pred CCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccccc
Confidence 77664 5666643 33443 333322211000000111 0 00 0 000 0 112
Q ss_pred eeccCCCCCceEEEEecchhhHHHhcCC-------HHHHHHHHHHHHHHhcCCCCCccEE-Ee-ccCCCCCC---CCCcC
Q 017808 214 LNLHKATGHCVLVYMPAGQLARDIEKMS-------DEAAANFAFTQLKKILPDASSPIQY-LV-SHWGTDAN---SLGSY 281 (365)
Q Consensus 214 ~~~~~~~g~~~l~~~~~g~~a~~~~~~~-------~~e~~~~~~~~L~~~~~~~~~p~~~-~~-~~W~~~~~---~~g~y 281 (365)
++...+.+++++..|+.... ..|+... +++..+.+++.+++++|+...-+.. .+ +--....| .+|.|
T Consensus 410 Dptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn~ 488 (561)
T KOG4254|consen 410 DPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGNI 488 (561)
T ss_pred CCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCcc
Confidence 22334567778887776533 3444433 4568888999999999874332211 11 11111111 13433
Q ss_pred CCCCCCCCHH--HHH-----HHhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 017808 282 SYDTVGKSHD--LYE-----RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 282 ~~~~~g~~~~--~~~-----~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
-..+.+.... .++ ..++|+++||+||+.++++ |+|-+|- |+.+|...+..
T Consensus 489 ~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~ 545 (561)
T KOG4254|consen 489 FHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILD 545 (561)
T ss_pred cCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhh
Confidence 2211111100 122 2378999999999999994 5676654 88888766543
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=6.1e-10 Score=108.52 Aligned_cols=80 Identities=29% Similarity=0.253 Sum_probs=64.4
Q ss_pred CCCcccChhc-cccccccCCCceeccCChHHHHHHHhc-----cCCeecCceeEEEEecCC-eeEEEEcCCcEEEcCEEE
Q 017808 75 ADAETISLKS-WDKEELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVV 147 (365)
Q Consensus 75 ~~~~~~S~~~-~~~~~~~~g~~~~~~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~-~v~V~~~~g~~~~ad~VI 147 (365)
.++.+.++.. +.......++..+++|||++|+++|++ +++|+++++|++|..+++ ++.|++.+|+.+++|.||
T Consensus 195 ~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv 274 (487)
T COG1233 195 APPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVV 274 (487)
T ss_pred CCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeE
Confidence 6677776322 223445667788999999999999987 568999999999998877 477888888789999999
Q ss_pred EecChhh
Q 017808 148 VAVPLGV 154 (365)
Q Consensus 148 ~t~p~~~ 154 (365)
+++....
T Consensus 275 ~~~~~~~ 281 (487)
T COG1233 275 SNADPAL 281 (487)
T ss_pred ecCchhh
Confidence 9999843
No 31
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.99 E-value=6e-09 Score=92.88 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=111.1
Q ss_pred CCCCCCHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCcccChhc---ccccc------ccCCC-ce-ecc
Q 017808 32 HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKS---WDKEE------LLPGG-HG-LMV 99 (365)
Q Consensus 32 ~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~---~~~~~------~~~g~-~~-~~~ 99 (365)
...+.|+++|+++. .+++.+.+.++.| .++++.++..+++..- ++.+. ...+. .+ .+.
T Consensus 147 ~~~~~tl~~~L~~~----------~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ 216 (447)
T COG2907 147 GQGDTTLAQYLKQR----------NFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVA 216 (447)
T ss_pred cCCCccHHHHHHhc----------CccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcc
Confidence 45688999999863 6888899999998 5789999988888643 22111 11222 23 578
Q ss_pred CChHHHHHHHhccCC--eecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhc
Q 017808 100 RGYLPVINTLAKGLD--IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 177 (365)
Q Consensus 100 gG~~~L~~~L~~~l~--I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~ 177 (365)
||...-+++|+.++. |+++++|++|..-.+||.|+..+|++-++|+||+++-+.+...++ ++-+++.++.+..+
T Consensus 217 ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL----~e~sp~e~qll~a~ 292 (447)
T COG2907 217 GGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL----DEPSPEERQLLGAL 292 (447)
T ss_pred cchHHHHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc----CCCCHHHHHHHHhh
Confidence 999999999999985 999999999999999999998899999999999999998865322 33345556799999
Q ss_pred CCccccEEEEEc
Q 017808 178 GVGIENKIIMHF 189 (365)
Q Consensus 178 ~~~~~~kv~l~~ 189 (365)
.|.....|....
T Consensus 293 ~Ys~n~aVlhtd 304 (447)
T COG2907 293 RYSANTAVLHTD 304 (447)
T ss_pred hhhhceeEEeec
Confidence 998877555443
No 32
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2e-07 Score=88.21 Aligned_cols=253 Identities=19% Similarity=0.135 Sum_probs=136.5
Q ss_pred cCCCCcccChhcccccc------ccCCC-ceeccCCh-----HHHHHHHhc-cCCeecCceeEEEEecCCe-----eEEE
Q 017808 73 FAADAETISLKSWDKEE------LLPGG-HGLMVRGY-----LPVINTLAK-GLDIRLGHRVTKITRHYIG-----VKVT 134 (365)
Q Consensus 73 ~g~~~~~~S~~~~~~~~------~~~g~-~~~~~gG~-----~~L~~~L~~-~l~I~l~~~V~~I~~~~~~-----v~V~ 134 (365)
...+++..|++.++... ..++. ...+.+++ ..+.+.+-+ +.+++++.+|+.|...... +.+.
T Consensus 177 ~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~ 256 (485)
T COG3349 177 TFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGD 256 (485)
T ss_pred cccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeee
Confidence 45788999987755210 11111 22233332 344455543 4579999999999876521 2233
Q ss_pred EcCCcE---EEcCEEEEecChhhhhcCCccccCC-Cc-HHHHHHHhhcCCccccEEEEEcCCCCC-CCC--Cccee---e
Q 017808 135 VEGGKT---FVADAVVVAVPLGVLKARTIKFEPR-LP-DWKEAAIDDLGVGIENKIIMHFDKVFW-PNV--EFLGV---V 203 (365)
Q Consensus 135 ~~~g~~---~~ad~VI~t~p~~~l~~~~i~f~p~-Lp-~~~~~ai~~~~~~~~~kv~l~~~~~~w-~~~--~~~g~---~ 203 (365)
.. +.. ..++.|+.+.....++... |. .+ ..-.+.+..+..-++.++++.|+..-| ... .-++. +
T Consensus 257 ~~-~~~~e~~~~~~~~~~~~v~~~~~~~----ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~ 331 (485)
T COG3349 257 VT-GPEQEQQAALAVVDAFAVQRFKRDL----PSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLL 331 (485)
T ss_pred ec-CcceEeeehhhhhcccccchHhhcC----cccccccccccccccccccceeEEEEeecCccccccccchhhhhhccc
Confidence 33 433 3455555555555554321 21 12 112245566677788899999986433 111 10010 0
Q ss_pred cCCCCceeEeee-------ccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcCC-CCCccEEEeccCCCCC
Q 017808 204 SDTSYGCSYFLN-------LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDA 275 (365)
Q Consensus 204 ~~~~~~~~~~~~-------~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~-~~~p~~~~~~~W~~~~ 275 (365)
.........+.. +..+.....+..... .+..+...+++++...+.+.+...+|. ........+.+=
T Consensus 332 ~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~---- 405 (485)
T COG3349 332 WSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVN---- 405 (485)
T ss_pred cccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHHHHHHHHhhhcCCchhcccccccceec----
Confidence 100000111111 111111111111111 133456678889999999999988775 212211111110
Q ss_pred CCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 017808 276 NSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 339 (365)
Q Consensus 276 ~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~ 339 (365)
.++.| ...||. ...++...+|++|+++|||++...+.++||+|..||++||+.|++.+...
T Consensus 406 -~q~~~-~~~pgs-~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~ 466 (485)
T COG3349 406 -QQSLY-GLAPGS-YHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHH 466 (485)
T ss_pred -ccccc-ccCCCc-cccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhc
Confidence 11222 223433 23456667889999999999998889999999999999999999887644
No 33
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.56 E-value=3.1e-06 Score=78.89 Aligned_cols=97 Identities=23% Similarity=0.255 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHh-hhhhcCCCCcccChhcccc-ccccCCCceeccCChHHHHHHHhc--cCCeecCceeEEE-EecCCe
Q 017808 56 GLAHKVLQWYLCR-MEGWFAADAETISLKSWDK-EELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKI-TRHYIG 130 (365)
Q Consensus 56 ~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~-~~~~~g~~~~~~gG~~~L~~~L~~--~l~I~l~~~V~~I-~~~~~~ 130 (365)
++++.+.+.++.. +..-||.+. ++++..-.. .....++.+.++||..+|.+.|.+ +.++ +|++|++| ...+++
T Consensus 80 gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~ 157 (368)
T PF07156_consen 80 GISERFINELVQAATRVNYGQNV-NIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDG 157 (368)
T ss_pred CCCHHHHHHHHHhheEeeccccc-chhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCC
Confidence 4555566555554 566688763 455544221 111346688999999999999976 5678 99999999 444444
Q ss_pred ---eEEEEcC--C-cEEEcCEEEEecChhh
Q 017808 131 ---VKVTVEG--G-KTFVADAVVVAVPLGV 154 (365)
Q Consensus 131 ---v~V~~~~--g-~~~~ad~VI~t~p~~~ 154 (365)
+.|+..+ + ..-.+|.||+|+|+..
T Consensus 158 ~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 158 YSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred ceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 3455443 2 2335799999999954
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.98 E-value=0.00011 Score=70.70 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=47.9
Q ss_pred ceeccCChHHHHHHHhc-----cCCeecCceeEEEEecCCe--eEEEEcCCcEEEcCEEEEecC
Q 017808 95 HGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVP 151 (365)
Q Consensus 95 ~~~~~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~t~p 151 (365)
..++.+|++.|+++|++ +..++|+++|++|..++++ +.|++.+|+++.|++||+..+
T Consensus 224 ~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 224 FIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred ceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 45678999999999985 4479999999999987644 568999999999999999544
No 35
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.73 E-value=0.00095 Score=62.75 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHh-hhhhcCCCCcccChhcccc--------ccccC-CCceeccCChHHHHHHHhcc--CCeecCceeEE
Q 017808 56 GLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--------EELLP-GGHGLMVRGYLPVINTLAKG--LDIRLGHRVTK 123 (365)
Q Consensus 56 ~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~--------~~~~~-g~~~~~~gG~~~L~~~L~~~--l~I~l~~~V~~ 123 (365)
.+++.+.+.++.+ ..-.||.+++++++.++.. ...+. .-.+++++|+.+|.++|.+. ++|+||+.+..
T Consensus 141 ~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~ 220 (377)
T TIGR00031 141 LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHINL 220 (377)
T ss_pred HHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccce
Confidence 5889999999886 6678999999999876431 01111 12456899999999999975 89999998888
Q ss_pred EEecCCeeEEEEcCCcEEEcCEEEEecChhhhh
Q 017808 124 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 156 (365)
Q Consensus 124 I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~ 156 (365)
+...++++.+. ++ .+. +.||.|.|+..+-
T Consensus 221 ~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 221 LKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred eeccccceeec--cc-ccc-CcEEEecCchHHH
Confidence 87655555442 22 333 8899999998753
No 36
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.50 E-value=0.015 Score=54.97 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=38.0
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++++++|++|..++++|+|++.+|+++.||.||.|....
T Consensus 120 gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 120 NIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 567999999999999888999999899889999999999865
No 37
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.41 E-value=0.017 Score=54.59 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=36.4
Q ss_pred CCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 113 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
++|+++++|++|..++++|.|++.+|+++.+|.||.|....
T Consensus 122 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 122 VTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred cEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 67999999999999888999999999899999999887643
No 38
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.10 E-value=0.056 Score=51.34 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=40.7
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 104 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
.|.+.+.+ +++|+++++|++|..++++|.|++.+|.++.+|.||.|.-..
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 34444443 467999999999998888999999899889999999998754
No 39
>PRK09126 hypothetical protein; Provisional
Probab=97.10 E-value=0.061 Score=51.09 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=40.5
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 105 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 105 L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
|.+.+.+ +++|+++++|++++.+++++.|++.+|+++.||.||.|....
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 3444432 568999999999998888888988899999999999998864
No 40
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.09 E-value=0.087 Score=50.19 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=37.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++|+++++|++|..+++++.|++.+|+++.||.||.|....
T Consensus 125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 568999999999999999999999899899999999998653
No 41
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.00 E-value=0.08 Score=50.21 Aligned_cols=186 Identities=14% Similarity=0.107 Sum_probs=94.3
Q ss_pred eecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhcCCccccEEEEEcCCCCC
Q 017808 115 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 194 (365)
Q Consensus 115 I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w 194 (365)
.+++++|++|..+++++.|++.+|++++||.||.|.-..-.-+..+. .+. ....|+... +.+.++.+.
T Consensus 128 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g--~~~--------~~~~~~~~~-~~~~v~~~~- 195 (388)
T PRK07494 128 TRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAG--IGV--------RTWSYPQKA-LVLNFTHSR- 195 (388)
T ss_pred EEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcC--CCc--------eecCCCCEE-EEEEEeccC-
Confidence 48899999999999999999999989999999998876431111111 100 011122211 222332221
Q ss_pred CCCCcceeecCCCCceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcCCCCCccEEEeccCCCC
Q 017808 195 PNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTD 274 (365)
Q Consensus 195 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~~~W~~~ 274 (365)
+................ +... +++...++.....+....+...+++++.+.+.+.+..+++.. . ...+
T Consensus 196 ~~~~~~~~~~~~~g~~~-~~Pl--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~--~~~~--- 263 (388)
T PRK07494 196 PHQNVSTEFHTEGGPFT-QVPL--PGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGKL----T--LEPG--- 263 (388)
T ss_pred CCCCEEEEEeCCCCcEE-EEEC--CCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCe----E--EccC---
Confidence 11111111111111111 1121 222222332333333345566778888877777676666531 0 1100
Q ss_pred CCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCC---CCcchhHHHHHHHHHHHHHHHH
Q 017808 275 ANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 275 ~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~---~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
...|+. .. ...+... -+|+.++||+.|. ..+.+++.|++.+...|+.+..
T Consensus 264 ---~~~~~l---~~--~~~~~~~--~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~ 316 (388)
T PRK07494 264 ---RQAWPL---SG--QVAHRFA--AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED 316 (388)
T ss_pred ---CcEeec---hH--HHHHhhc--cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence 011111 00 0111222 2699999999664 2234888888888888877653
No 42
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.99 E-value=0.1 Score=49.92 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=41.3
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 104 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
.|.+++.+ +++|+++++|++|..+++++.|++.+|++++||.||.|--.+
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGAN 167 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 34444443 467999999999999888999999999999999999998764
No 43
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.96 E-value=0.15 Score=48.41 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=37.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++|+++++|++|..+++++.|++.+|+++.||.||.|.-..
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 168 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAA 168 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 567999999999999888999998889899999999998764
No 44
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.93 E-value=0.14 Score=48.57 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=41.5
Q ss_pred HHHHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..|.+.+.+ +++|+.+++|++|..+++++.|++.+|++++||.||.|.-..-
T Consensus 116 ~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 116 LALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 344444433 5678999999999988888999988998999999999987643
No 45
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.91 E-value=0.19 Score=48.02 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=41.1
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 104 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 104 ~L~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
.|.+++.+ +++|+.+++|.+|+.++++|.|++.+|+++.||.||.|.-..-
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 33444433 5679999999999999899999999998899999999987644
No 46
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.78 E-value=0.15 Score=48.27 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=41.2
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 105 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 105 L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
|.+++.+ +++|+++++|++++.+++++.|++.+|++++||.||.|.-..-
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCc
Confidence 3344433 4679999999999999999999999999999999999987644
No 47
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.67 E-value=0.24 Score=47.08 Aligned_cols=193 Identities=17% Similarity=0.164 Sum_probs=97.0
Q ss_pred CCeecCceeEEEEecCCeeEEEEc-CCcEEEcCEEEEecChhhhhcCCccccCCCcHHHHHHHhhcCCccccEEEEEcCC
Q 017808 113 LDIRLGHRVTKITRHYIGVKVTVE-GGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDK 191 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~~~v~V~~~-~g~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~ 191 (365)
++++.+++|+.++.+++.|.|+.. ||++++||.||-|=-.+-.-+.... .+. .....|.... +.+.++.
T Consensus 120 v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~-~~~--------~~~~~y~~~~-l~~~~~~ 189 (387)
T COG0654 120 VTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG-IAE--------FSGRDYGQTA-LVANVEP 189 (387)
T ss_pred cEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcC-CCC--------ccCCCCCceE-EEEEeec
Confidence 589999999999999999988888 9999999999988765433221111 000 1111222222 2222222
Q ss_pred CCCCCCCcceeecCCCCceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhcCCCCCccEEEeccC
Q 017808 192 VFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHW 271 (365)
Q Consensus 192 ~~w~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~~~~~L~~~~~~~~~p~~~~~~~W 271 (365)
..+..........+. .... +.+. ++....++.+.....+.....+++++. ...|.+.++............|
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~-~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~ 261 (387)
T COG0654 190 EEPHEGRAGERFTHA-GPFA-LLPL--PDNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGERDPLGRVTLVSS 261 (387)
T ss_pred CCCCCCeEEEEecCC-CceE-EEec--CCCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCcccccceEEEccc
Confidence 111111111111111 1111 1111 112223344444445556667777665 5566666765211111111122
Q ss_pred CCCCCCCCcCCCCCCCCCHHHHHHHhCCCCCEEEeccccCC---CCcchhHHHHHHHHHHHHHHHHHH
Q 017808 272 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 272 ~~~~~~~g~y~~~~~g~~~~~~~~l~~p~~~l~~aG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
.. .|. ... ...+.... +++.++||+-|. ..+.+++-+++-+...|+.+....
T Consensus 262 ~~------~~p---l~~--~~a~~~~~--~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~ 316 (387)
T COG0654 262 RS------AFP---LSL--RVAERYRR--GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAP 316 (387)
T ss_pred cc------ccc---ccc--hhhhheec--CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 11 111 111 11122222 689999999764 233478888888888887776554
No 48
>PRK08013 oxidoreductase; Provisional
Probab=96.65 E-value=0.4 Score=45.71 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=40.9
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 104 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
.|.+.+.+ +++|+++++|+.|+.++++|.|+..+|++++||.||-|--..
T Consensus 116 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 116 ALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGAN 167 (400)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCC
Confidence 34444443 468999999999999889999998999999999999887754
No 49
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.63 E-value=0.26 Score=47.13 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=33.8
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcC-C--cEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEG-G--KTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~-g--~~~~ad~VI~t~p~~ 153 (365)
+++++++++|++|..+++++.|++.+ + .+++||.||.|--..
T Consensus 136 ~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~ 180 (415)
T PRK07364 136 NITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGAR 180 (415)
T ss_pred CcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCC
Confidence 46789999999999888888887653 2 369999999987653
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.50 E-value=0.25 Score=44.58 Aligned_cols=50 Identities=28% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCeeEEEEcC-CcEEEcCEEEEecChh
Q 017808 104 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEG-GKTFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~-g~~~~ad~VI~t~p~~ 153 (365)
.|.+.+.+ +++++++++|++|..+++++.+...+ +.+++||.||.|....
T Consensus 96 ~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 96 QLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 33444433 56899999999999988887766543 4579999999999864
No 51
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.45 E-value=0.22 Score=45.99 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=40.6
Q ss_pred HHHHHHHhc-----cCCeecCceeEEEEecCCeeE-EEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..++..|++ +++|+.+++|++|...+++|. |.+.+| ++.||+||+|+.+..
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 555555543 568999999999998877764 777777 899999999999865
No 52
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.45 E-value=0.0093 Score=55.33 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=47.1
Q ss_pred CChHHHHHHHhc-----cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecC
Q 017808 100 RGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 151 (365)
Q Consensus 100 gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p 151 (365)
...+.|+++|.+ +++|+++++|.+|+.++.+..|.+.+|+++.||.+|+|+-
T Consensus 108 dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 108 DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 678899998866 4579999999999999989999999999999999999986
No 53
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.45 E-value=0.0059 Score=52.14 Aligned_cols=41 Identities=41% Similarity=0.551 Sum_probs=32.2
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|++|.+.+++|.|++.+++++.||+||+|+-.
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 45799999999999999999999999988999999999984
No 54
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.35 E-value=0.57 Score=44.33 Aligned_cols=49 Identities=20% Similarity=0.093 Sum_probs=38.7
Q ss_pred HHHHHHhc-c-CCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 104 PVINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~-~-l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
.|.+++.+ + ++++ ++.|++|...++++.|++.+|+++.||.||.|.-..
T Consensus 116 ~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 116 ALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred HHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCC
Confidence 34444443 2 5677 999999998888899999899889999999988764
No 55
>PRK10015 oxidoreductase; Provisional
Probab=96.30 E-value=0.37 Score=46.47 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=33.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+++|+.+++|+.|..+++++.+...++.++.||.||.|.-..-
T Consensus 122 Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 122 GAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred CCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 6789999999999887777763334456899999999987543
No 56
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.13 E-value=0.28 Score=47.30 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=34.2
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++|+.+++|++|..+++++.+.+.+|+++.||.||.|.-..
T Consensus 122 Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 122 GAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 678999999999988777775445567789999999998653
No 57
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.11 E-value=0.97 Score=42.71 Aligned_cols=51 Identities=35% Similarity=0.296 Sum_probs=42.2
Q ss_pred HHHHHHHhccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 103 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+.+.+.+.+...+++++.|++|...++++.|++.+|++++|+.||-+.++.
T Consensus 91 ~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 91 EFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 444555554446899999999999999999999999999999999998854
No 58
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.09 E-value=0.63 Score=43.79 Aligned_cols=42 Identities=33% Similarity=0.392 Sum_probs=37.3
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|++|..+++++.|++.+| ++.||+||+|+....
T Consensus 163 gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 163 GAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred CCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 678999999999999888888998888 799999999998754
No 59
>PRK06996 hypothetical protein; Provisional
Probab=95.96 E-value=0.79 Score=43.67 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=37.1
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCeeEEEEcCC---cEEEcCEEEEecC
Q 017808 104 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVP 151 (365)
Q Consensus 104 ~L~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~t~p 151 (365)
.|.+++.+ +++++++++|+.|+.++++|+|+..+| ++++||.||-|--
T Consensus 120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 120 ALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 33344433 457999999999999999999987754 5899999999855
No 60
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.78 E-value=0.019 Score=53.35 Aligned_cols=57 Identities=33% Similarity=0.340 Sum_probs=44.7
Q ss_pred eccCC---hHHHHHHHhc-----cCCeecCceeEEEEecCCeeE-EEEcCCcEEEcCEEEEecChhh
Q 017808 97 LMVRG---YLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 97 ~~~gG---~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
...+| ...+++.|.+ +++|+++++|++|..++++|+ |.+.+|+ +.||+||+|+.+..
T Consensus 138 ~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 138 FPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred ccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 34555 5677777654 568999999999999999998 9999996 99999999997754
No 61
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.76 E-value=0.029 Score=45.89 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=39.1
Q ss_pred hHHHHHHHhccCCe-ecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecC
Q 017808 102 YLPVINTLAKGLDI-RLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 151 (365)
Q Consensus 102 ~~~L~~~L~~~l~I-~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p 151 (365)
++.+.+.+..+++| +...+|+.|...++++.|.+.+|..+.||+||+|+-
T Consensus 104 ~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 104 FDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred HHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 34444444344443 467899999999999999999999999999999974
No 62
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.36 E-value=0.033 Score=52.73 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=42.7
Q ss_pred HHHHHHHhc----cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAK----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~----~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..++.+|.+ +++|+.+++|.+|+.+++++.|+|.+|..+.||+||+|+....
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 445555543 5679999999999988888999999997799999999988765
No 63
>PRK07045 putative monooxygenase; Reviewed
Probab=95.22 E-value=1.6 Score=41.37 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=35.8
Q ss_pred cCCeecCceeEEEEecCCe--eEEEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|+.|..++++ +.|++.+|+++.+|.||.|-...-
T Consensus 121 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 121 NVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred CeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 3579999999999987766 368888999999999998887653
No 64
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.17 E-value=3.3 Score=40.04 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=39.8
Q ss_pred HHHHHHHhc----cCCeecCceeEEEEec-------CCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAK----GLDIRLGHRVTKITRH-------YIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~----~l~I~l~~~V~~I~~~-------~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..|.+.+.+ .++++++++|..|+.. +++|+|++.+|++++||.||-|--..-
T Consensus 121 ~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 121 NSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred HHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence 344555544 2679999999999753 467889999999999999998876543
No 65
>PRK06185 hypothetical protein; Provisional
Probab=94.93 E-value=3.6 Score=39.19 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=33.0
Q ss_pred cCCeecCceeEEEEecCCee---EEEEcCCc-EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGV---KVTVEGGK-TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v---~V~~~~g~-~~~ad~VI~t~p~~ 153 (365)
+++++.+++|+++..+++++ .+.+.+|+ +++||.||.|.-..
T Consensus 123 ~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~ 168 (407)
T PRK06185 123 NFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRH 168 (407)
T ss_pred CcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCc
Confidence 46799999999999887765 34445664 79999999998754
No 66
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=94.83 E-value=0.065 Score=51.14 Aligned_cols=52 Identities=29% Similarity=0.467 Sum_probs=36.8
Q ss_pred CChHHHHHHHhc-----cCCeecCceeEEEEecCCe-eEEEEcCCcEEEcCEEEEecC
Q 017808 100 RGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVP 151 (365)
Q Consensus 100 gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~t~p 151 (365)
.-..++++.|.+ +++|+++++|.+|..++++ +.|.+.+++.+.||+||+|+-
T Consensus 106 ~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 106 DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp --HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence 346777777754 5689999999999998888 778887777999999999975
No 67
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.36 E-value=0.12 Score=49.36 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=43.3
Q ss_pred hHHHHHHHhc-----cCCeecCceeEEEEecCCe-eEEEEcCCcE-EEcCEEEEecChhhhh
Q 017808 102 YLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKT-FVADAVVVAVPLGVLK 156 (365)
Q Consensus 102 ~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~~~~g~~-~~ad~VI~t~p~~~l~ 156 (365)
+..+..+|++ +.+|+||++|+.|+..+++ ..+.+.+|++ ++|+.||.+.....+.
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 4555555544 5689999999999999985 4577888876 9999999999976643
No 68
>PRK07588 hypothetical protein; Provisional
Probab=94.01 E-value=0.12 Score=48.99 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=40.4
Q ss_pred HHHhccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 107 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 107 ~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+++..+++|+++++|++|+.++++|.|++.+|++++||.||.|--..-
T Consensus 111 ~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 111 TAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 334445789999999999999999999999999999999999887643
No 69
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.93 E-value=0.14 Score=48.46 Aligned_cols=41 Identities=32% Similarity=0.318 Sum_probs=36.2
Q ss_pred cCCeecCceeEEEEecCCee-EEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|++++.|..|...++.+ .|.+.+|+++.+|+||+|+--
T Consensus 187 G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 187 GGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred CcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 46899999999999998865 488899999999999999864
No 70
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=93.62 E-value=6.2 Score=37.57 Aligned_cols=42 Identities=33% Similarity=0.204 Sum_probs=33.0
Q ss_pred cCCeecCceeEEEEec-CCee-EEEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRH-YIGV-KVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~-~~~v-~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
++++..+++|++|... ++++ .|++.+| ++.|++||+++....
T Consensus 197 Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 197 GVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred CCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 6789999999999864 4554 4888888 799999988876543
No 71
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.52 E-value=6.8 Score=36.92 Aligned_cols=41 Identities=2% Similarity=0.054 Sum_probs=35.3
Q ss_pred CCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 113 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
++++++++|++|..++++|.|++.++ +++||.||.|--..-
T Consensus 120 v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S 160 (374)
T PRK06617 120 ITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANS 160 (374)
T ss_pred cEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCc
Confidence 56889999999999889999988777 899999999887543
No 72
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=93.32 E-value=5.5 Score=37.91 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=39.2
Q ss_pred cCChHHHHHHHh--ccCCeecCceeEEEEecCCeeEEE-EcCCcEEEcCEEEEecChh
Q 017808 99 VRGYLPVINTLA--KGLDIRLGHRVTKITRHYIGVKVT-VEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 99 ~gG~~~L~~~L~--~~l~I~l~~~V~~I~~~~~~v~V~-~~~g~~~~ad~VI~t~p~~ 153 (365)
+.-+.......+ .+.+++.+++|..+..+++++.+. ..++.++.|+.||.|.-++
T Consensus 94 R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 94 RAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred hHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 344566333333 367899999999999998886544 3344689999999999643
No 73
>PRK07236 hypothetical protein; Provisional
Probab=93.27 E-value=0.26 Score=46.79 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=44.2
Q ss_pred ChHHHHHHHhccC---CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 101 GYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 101 G~~~L~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++..+.+.|.+.+ +|+++++|++|+.++++|+|++.+|+++.||.||.|--.
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 5667777777654 599999999999998999999999999999999999554
No 74
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.23 E-value=0.23 Score=47.61 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=43.4
Q ss_pred HHHHHHHhccC---CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..|.+.|.+.+ .|+++++|++|..++++|.|++.+|+++.||.||.|--..-
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 45667776654 48999999999998889999999999999999999987654
No 75
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=92.99 E-value=0.29 Score=48.08 Aligned_cols=42 Identities=29% Similarity=0.219 Sum_probs=35.3
Q ss_pred CCeecCceeEEEEec-CCeeEEEEcCCcEEEcCEEEEecChhhh
Q 017808 113 LDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVL 155 (365)
Q Consensus 113 l~I~l~~~V~~I~~~-~~~v~V~~~~g~~~~ad~VI~t~p~~~l 155 (365)
++|+++++|+.|... ++.+.|+|.+| ++.||+||+++-....
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 568999999999987 44578988888 7999999999987653
No 76
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.95 E-value=0.29 Score=46.52 Aligned_cols=51 Identities=31% Similarity=0.433 Sum_probs=41.3
Q ss_pred HHHHHHHhc-----cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..+.++|.+ +++|+++++|.+|...++++.|.+.+| ++.||.||+|+....
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 555555543 568999999999998888888888877 799999999988753
No 77
>PRK06847 hypothetical protein; Provisional
Probab=92.59 E-value=0.35 Score=45.54 Aligned_cols=42 Identities=45% Similarity=0.428 Sum_probs=37.9
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++|+++++|++|+.+++++.|++.+|+++.||.||.|....
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 568999999999999888899999999999999999998764
No 78
>PRK05868 hypothetical protein; Validated
Probab=92.55 E-value=0.28 Score=46.33 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=38.2
Q ss_pred ccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 111 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 111 ~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
.+++|+++++|+.|+.++++|+|+..||++++||.||-|--..-
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S 160 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS 160 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc
Confidence 35679999999999988889999999999999999998876543
No 79
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.40 E-value=7.1 Score=39.19 Aligned_cols=43 Identities=16% Similarity=-0.019 Sum_probs=31.5
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEc---CCc--EEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVE---GGK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~---~g~--~~~ad~VI~t~p~~~ 154 (365)
+++|.++++|+++..+++.|. |... +|+ .+.|+.||+|+--..
T Consensus 150 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 150 NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 568999999999998766654 4332 343 578999999997543
No 80
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.06 E-value=0.43 Score=44.96 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=40.2
Q ss_pred cCChHHHHHHHhc-----cCCeecCceeEEEEecCCeeEEEEcCC-cEEEcCEEEEecCh
Q 017808 99 VRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPL 152 (365)
Q Consensus 99 ~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~V~~~~g-~~~~ad~VI~t~p~ 152 (365)
.+-.++++++|.. +++|+++++|++| +++++.|.+.++ +.+.||+||+|+--
T Consensus 82 S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 4567888888864 5689999999999 344577776543 46999999999975
No 81
>PRK06753 hypothetical protein; Provisional
Probab=92.00 E-value=0.45 Score=44.79 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=42.3
Q ss_pred HHHHHHHhccC---CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..|.+.|.+.+ +|+++++|++|..++++|.|++.+|+++.+|.||-|-...-
T Consensus 98 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 98 QTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred HHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 44555565543 59999999999988889999999999999999999887543
No 82
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.95 E-value=0.47 Score=44.69 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=35.7
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++.+++|++|..+++++.|++.+| ++.||+||+|+...
T Consensus 159 g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred CCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 568999999999998888888888777 79999999999864
No 83
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=91.78 E-value=0.8 Score=43.71 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=40.2
Q ss_pred ChHHHHHHHhc-----cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 101 GYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 101 G~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
....+.+.|.+ +++|+++++|++|..+++.+.|++ +++++.||+||+|+..
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGG 158 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCC
Confidence 34566666644 567999999999988777788877 4568999999999985
No 84
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=91.58 E-value=2.4 Score=40.85 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=39.7
Q ss_pred CceeccCChHHHHHHHhc-----cCCeecCceeEEEEecCCe-eE-EEEcCCcEEEcCEEEEe
Q 017808 94 GHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VK-VTVEGGKTFVADAVVVA 149 (365)
Q Consensus 94 ~~~~~~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~-V~~~~g~~~~ad~VI~t 149 (365)
...++.-|.+.|++++.+ +....||++|.+|..++++ +. |.+ +|+++.|++||+.
T Consensus 223 PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 223 PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 355667789999999977 4468999999999985544 43 554 8889999999964
No 85
>PRK06116 glutathione reductase; Validated
Probab=91.58 E-value=0.5 Score=45.89 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=35.0
Q ss_pred cCCeecCceeEEEEecCCe-eEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|.+|..++++ +.|++.+|+++.||.||+++..
T Consensus 222 GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 222 GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 5789999999999876655 7788888989999999999853
No 86
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.58 E-value=4.3 Score=38.21 Aligned_cols=40 Identities=35% Similarity=0.314 Sum_probs=33.1
Q ss_pred CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 114 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 114 ~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
.+..+++|..+....+.+.|.|.+|+ +.||+||+|+-...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 173 IIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred EEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 47779999999985345779999885 99999999998765
No 87
>PRK07846 mycothione reductase; Reviewed
Probab=91.52 E-value=0.52 Score=45.77 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=36.3
Q ss_pred ccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 111 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 111 ~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
.+++++++++|++|+..++++.|++.+|+++.||.||+++..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 260 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR 260 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC
Confidence 456799999999998877778888888889999999999874
No 88
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.26 E-value=0.64 Score=45.20 Aligned_cols=43 Identities=40% Similarity=0.540 Sum_probs=36.7
Q ss_pred hccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 110 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 110 ~~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
..++++++++.|++|..+++++.|++.+|+++.+|.||+++..
T Consensus 221 ~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 221 KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 3457799999999999877778888888888999999999974
No 89
>PRK09897 hypothetical protein; Provisional
Probab=91.24 E-value=0.53 Score=46.62 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=34.3
Q ss_pred CCeecCceeEEEEecCCeeEEEEcC-CcEEEcCEEEEecCh
Q 017808 113 LDIRLGHRVTKITRHYIGVKVTVEG-GKTFVADAVVVAVPL 152 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~~~v~V~~~~-g~~~~ad~VI~t~p~ 152 (365)
+.|+.+++|+.|...++++.|++.+ |..+.||+||+|+--
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 4678899999999999999998865 467999999999974
No 90
>PRK06834 hypothetical protein; Provisional
Probab=91.21 E-value=0.6 Score=45.84 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=37.3
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++|+++++|++|..++++|.|++.+|++++||+||.|.-..
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 567999999999999999999988888889999999998654
No 91
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.20 E-value=0.44 Score=48.74 Aligned_cols=52 Identities=27% Similarity=0.362 Sum_probs=42.2
Q ss_pred HHHHHHHhc----cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAK----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~----~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..++++|.+ +++|+.+++|++|...+++|.|.+.+|..+.||+||+|+-...
T Consensus 408 ~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 355555543 4678999999999988888999998887788999999998764
No 92
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=91.11 E-value=0.54 Score=45.82 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=33.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++|+.+++|++|.. ++.+.|+|.+| ++.||+||+|+-..
T Consensus 197 Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 197 GVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred CCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 678999999999985 45577888888 69999999998754
No 93
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.11 E-value=0.64 Score=45.29 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=38.8
Q ss_pred HHHHHHHhc-----cCC--eecCceeEEEEecCCeeEEEEcCC--c--EEEcCEEEEecChh
Q 017808 103 LPVINTLAK-----GLD--IRLGHRVTKITRHYIGVKVTVEGG--K--TFVADAVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L~~-----~l~--I~l~~~V~~I~~~~~~v~V~~~~g--~--~~~ad~VI~t~p~~ 153 (365)
..+.+.|.+ ++. |++|++|++|...+++|.|++.++ . +..+|+||+|+-..
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCC
Confidence 556666643 344 899999999999888899887643 2 45799999999853
No 94
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=90.94 E-value=0.64 Score=44.45 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=34.9
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|++|..+++++. |++.++ ++.||+||+|+....
T Consensus 215 G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 215 GVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 568999999999998888764 777655 799999999998753
No 95
>PRK07190 hypothetical protein; Provisional
Probab=90.52 E-value=0.71 Score=45.33 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=38.2
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|+.|..++++|.|++.+|++++|++||.|.-..-
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 5789999999999999999988888888999999999988644
No 96
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=90.51 E-value=0.74 Score=43.49 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=36.1
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++++++++|++|..+++++.|++.+|+++.||.||+++..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 56899999999999877778888889999999999999864
No 97
>PLN02507 glutathione reductase
Probab=90.46 E-value=0.79 Score=45.15 Aligned_cols=41 Identities=32% Similarity=0.523 Sum_probs=35.9
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|...++++.|.+.+|+++.||.||+++..
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 57899999999998777788888888888999999999874
No 98
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.28 E-value=0.45 Score=33.80 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=27.8
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCeeEEEEcCC
Q 017808 104 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG 138 (365)
Q Consensus 104 ~L~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~g 138 (365)
.+.+.|.+ +++|++|+.|++|..++++++|++.||
T Consensus 45 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 45 ILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 34445543 678999999999999998877888886
No 99
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=90.16 E-value=0.85 Score=44.40 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=35.8
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|++|...++++.+++.+|+++.||.||+++..
T Consensus 230 gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 270 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR 270 (461)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC
Confidence 56899999999999877788888888888999999999874
No 100
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=90.15 E-value=0.78 Score=45.01 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=39.7
Q ss_pred hHHHHHHHh-c-cCCeecCceeEEEEec-CCeeEEE---EcCCc--EEEcCEEEEecChhh
Q 017808 102 YLPVINTLA-K-GLDIRLGHRVTKITRH-YIGVKVT---VEGGK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 102 ~~~L~~~L~-~-~l~I~l~~~V~~I~~~-~~~v~V~---~~~g~--~~~ad~VI~t~p~~~ 154 (365)
+.+|.+.+. . +++|+++++|+.|... +++|+|+ +.+|+ ++.||+||+|+-...
T Consensus 187 ~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 187 TRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 345555553 2 5789999999999987 6678775 44553 689999999998766
No 101
>PRK08163 salicylate hydroxylase; Provisional
Probab=90.10 E-value=0.75 Score=43.66 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=40.7
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 104 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 104 ~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
.|.+.+.+ +++++++++|++|..++++|.|++.+|+++.||.||.|.-..-
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcCh
Confidence 34444433 2679999999999988888999999998999999999986543
No 102
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.99 E-value=0.81 Score=43.71 Aligned_cols=43 Identities=37% Similarity=0.515 Sum_probs=34.6
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCC-----cEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGG-----KTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g-----~~~~ad~VI~t~p~~~ 154 (365)
+++|+.+++|++|..++++|.|.+.++ .+++||+||+|+-+..
T Consensus 211 G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 211 GVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 568999999999998888877654433 3689999999998764
No 103
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=89.87 E-value=0.93 Score=43.95 Aligned_cols=41 Identities=37% Similarity=0.472 Sum_probs=35.7
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++++++++.|.+|...++++.|++.+|+++.+|.||+++..
T Consensus 221 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 57899999999998877778888878888999999999874
No 104
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=89.63 E-value=0.99 Score=44.06 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=35.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|.+|+.+++++.|.+.+|+++.+|.||+++..
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC
Confidence 56799999999998777788888888989999999998764
No 105
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.51 E-value=0.9 Score=44.23 Aligned_cols=41 Identities=41% Similarity=0.588 Sum_probs=34.7
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCC---cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~t~p~ 152 (365)
+++|++|++|++|..+++++.|.+.+| +++.||.||+++..
T Consensus 227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 568999999999998777888877666 67999999999864
No 106
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=89.17 E-value=1.2 Score=42.62 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCeeE-EEEcCC--cEEEcCEEEEecChh
Q 017808 104 PVINTLAK-GLDIRLGHRVTKITRHYIGVK-VTVEGG--KTFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~-~l~I~l~~~V~~I~~~~~~v~-V~~~~g--~~~~ad~VI~t~p~~ 153 (365)
.|.+++.+ +.+|..+++|.++..++++++ |.+.++ ..+.||+||+|+-..
T Consensus 268 aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 268 ALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 34444433 457999999999999888876 666665 479999999997654
No 107
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.13 E-value=1.1 Score=42.72 Aligned_cols=40 Identities=25% Similarity=0.455 Sum_probs=34.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|++|.. ++.+.|++.+|+++.||.||+++..
T Consensus 200 GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 200 GVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 678999999999986 5567788889999999999998864
No 108
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=89.11 E-value=0.96 Score=44.46 Aligned_cols=52 Identities=35% Similarity=0.502 Sum_probs=37.2
Q ss_pred HHHHHHHhc-c-CCeecCceeEEEEecCCe-eEEEEc---CCc--EEEcCEEEEecChhh
Q 017808 103 LPVINTLAK-G-LDIRLGHRVTKITRHYIG-VKVTVE---GGK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~-~-l~I~l~~~V~~I~~~~~~-v~V~~~---~g~--~~~ad~VI~t~p~~~ 154 (365)
..|.+.+.+ + ++|+++++|++|+.++++ |.|++. +|+ ++.|++||+++....
T Consensus 187 ~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 187 RQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 333444433 3 689999999999986665 766643 353 689999999998765
No 109
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=89.10 E-value=1.1 Score=43.52 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=35.0
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCC--cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g--~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|..+++++.|.+.+| +++.+|.||+++..
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC
Confidence 568999999999998888888877777 47999999999874
No 110
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=88.97 E-value=1.2 Score=45.22 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=43.4
Q ss_pred HHHHHHHhccC---CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..|.+.|.+.+ .|+++++|++|+..+++|+|++.+|+++.+|.||.|--..-
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 45677776655 27899999999999999999999998999999999887644
No 111
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=88.65 E-value=30 Score=35.25 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=34.5
Q ss_pred HHHHHhc-c--CCeecCceeEEEEecCC---eeEEEEc------CC--cEEEcCEEEEecChhh
Q 017808 105 VINTLAK-G--LDIRLGHRVTKITRHYI---GVKVTVE------GG--KTFVADAVVVAVPLGV 154 (365)
Q Consensus 105 L~~~L~~-~--l~I~l~~~V~~I~~~~~---~v~V~~~------~g--~~~~ad~VI~t~p~~~ 154 (365)
|.+.|.+ + ++++++++|+.++.+++ +|+|+.. +| ++++||+||-|=-..-
T Consensus 147 L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 147 FLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred HHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch
Confidence 4444543 2 36789999999987643 4776654 35 5799999998876543
No 112
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=88.62 E-value=1.4 Score=39.84 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=35.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
++++++ +.|.+|...++.+.|++.+|+++.+|+||+|+-..
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 467888 89999999888888988888899999999999763
No 113
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=88.44 E-value=1.3 Score=42.45 Aligned_cols=55 Identities=29% Similarity=0.402 Sum_probs=41.9
Q ss_pred hHHHHHHHhc------cCCeecCceeEEEEecCCe-eEEEEc-----CCcEEEcCEEEEecChhhhh
Q 017808 102 YLPVINTLAK------GLDIRLGHRVTKITRHYIG-VKVTVE-----GGKTFVADAVVVAVPLGVLK 156 (365)
Q Consensus 102 ~~~L~~~L~~------~l~I~l~~~V~~I~~~~~~-v~V~~~-----~g~~~~ad~VI~t~p~~~l~ 156 (365)
++.|.+.|.+ ++++++|++|+.|++.+++ |.|++. +..++.|+.|++..--+.|.
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 5666666644 4579999999999999887 887753 23579999999998766543
No 114
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=88.24 E-value=3.5 Score=40.98 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=25.7
Q ss_pred CCEEEeccccCCCCc--chhHHHHHHHHHHHHHHHH
Q 017808 301 DNLFFAGEATSMSYP--GSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 301 ~~l~~aG~~~~~~~~--g~v~gA~~SG~~aA~~i~~ 334 (365)
.||-|.|.-+-.... =+++-++++|+.|+-.++.
T Consensus 487 ~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 487 TNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred ceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 489999988664211 3889999999999987653
No 115
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=87.11 E-value=1.5 Score=42.42 Aligned_cols=46 Identities=43% Similarity=0.586 Sum_probs=37.3
Q ss_pred HHHHhc-cCCeecCceeEEEEecCCeeEEEEcCCc--EEEcCEEEEecC
Q 017808 106 INTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGK--TFVADAVVVAVP 151 (365)
Q Consensus 106 ~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~g~--~~~ad~VI~t~p 151 (365)
.+.|.+ +++++++++|++++..++++.|++.+|+ ++++|+|++|+-
T Consensus 221 ~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 221 TKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred HHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC
Confidence 333333 3569999999999998888888888886 688999999986
No 116
>PRK06184 hypothetical protein; Provisional
Probab=87.08 E-value=1.5 Score=43.16 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHhc-cCCeecCceeEEEEecCCeeEEEE---cCCcEEEcCEEEEecChhh
Q 017808 105 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 105 L~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~---~~g~~~~ad~VI~t~p~~~ 154 (365)
|.+.+.+ +++|+++++|++|+.++++|.|+. .++++++||+||.|.-..-
T Consensus 115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 3444433 568999999999999888888776 5667899999999987654
No 117
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.51 E-value=2.1 Score=42.39 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=37.0
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++++++|++|...++.+.|++.+|+.+.+|+||+|+...
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 467999999999998877788888888889999999999864
No 118
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=86.33 E-value=2.3 Score=40.92 Aligned_cols=41 Identities=20% Similarity=0.002 Sum_probs=32.4
Q ss_pred cCCeecCceeEEEEecCCeeEE-EEcCC--cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKV-TVEGG--KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V-~~~~g--~~~~ad~VI~t~p~ 152 (365)
+++|+++++|.++...++++.+ .+.+| ..+.||+||+|+-.
T Consensus 273 Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 273 GGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 5689999999999988777763 44455 35899999999874
No 119
>PLN02463 lycopene beta cyclase
Probab=86.31 E-value=1.9 Score=41.74 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=34.9
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++ +.+|++|...++++.|++.+|++++||.||.|.-..
T Consensus 128 GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 128 GVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred CCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 45564 579999999988899999999899999999998653
No 120
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=86.30 E-value=2.5 Score=40.78 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=39.0
Q ss_pred ccCChHHHHHHHhc-----cCCeecCceeEEEEec--CCeeE-EEEc-CCcEEEcCEEEEecCh
Q 017808 98 MVRGYLPVINTLAK-----GLDIRLGHRVTKITRH--YIGVK-VTVE-GGKTFVADAVVVAVPL 152 (365)
Q Consensus 98 ~~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~--~~~v~-V~~~-~g~~~~ad~VI~t~p~ 152 (365)
..++...+++.|.+ +++|+++++|++|..+ ++.|. |.+. ++.++.|+.||+|+--
T Consensus 118 ~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 118 LRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 34555667777754 4689999999999876 34443 4443 3457899999999983
No 121
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=86.10 E-value=1.9 Score=42.30 Aligned_cols=52 Identities=31% Similarity=0.386 Sum_probs=37.4
Q ss_pred HHHHHHHhc-----cCCeecCceeEEEEecCC-eeEEEE---cCC--cEEEcCEEEEecChhh
Q 017808 103 LPVINTLAK-----GLDIRLGHRVTKITRHYI-GVKVTV---EGG--KTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~-----~l~I~l~~~V~~I~~~~~-~v~V~~---~~g--~~~~ad~VI~t~p~~~ 154 (365)
..+.++|.+ +++|+++++|++|..+++ +|.|++ .+| .+++||+||+|+....
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 555555543 568999999999998654 566653 334 3689999999998654
No 122
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=85.80 E-value=2.2 Score=41.21 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=33.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++++++++.|++|..+++++.|.+.+| ++.||.||+++..
T Consensus 213 gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 213 GVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 578999999999998777787877666 5899999999753
No 123
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=85.73 E-value=2.1 Score=39.27 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=38.0
Q ss_pred cCCeecCceeEEEEe---cCCeeEEEEcCCcEEEcCEEEEecChhhhh
Q 017808 112 GLDIRLGHRVTKITR---HYIGVKVTVEGGKTFVADAVVVAVPLGVLK 156 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~---~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~ 156 (365)
++.++.+..|..|+. ++..|.|.|.+|..|.|+.+|+|+-+...+
T Consensus 167 G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 167 GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred CeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 446999999999885 345688999999889999999999998754
No 124
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=85.68 E-value=2.4 Score=41.23 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=33.5
Q ss_pred cCCeecCceeEEEEecCCe-eEEEEcCC-cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIG-VKVTVEGG-KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~-v~V~~~~g-~~~~ad~VI~t~p~ 152 (365)
++++++++.|++|..++++ +.|++.+| +.+.||.||+++..
T Consensus 221 gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 221 GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence 5789999999999876544 67777777 57999999999864
No 125
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.64 E-value=2.4 Score=42.00 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=37.3
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++++++|.+|...++.+.|++.+|+++.||+||+|+...
T Consensus 280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 467999999999999888888888888889999999999874
No 126
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=85.54 E-value=1.7 Score=40.67 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHHhc--cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..|.+++.+ +++|+.+++|.+|+.. .|+|.+| .+.||+||+|+-...
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 456666543 6789999999999743 5778777 578999999998754
No 127
>PRK14727 putative mercuric reductase; Provisional
Probab=85.05 E-value=2.6 Score=41.26 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=34.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++|+++++|++|..+++++.|.+.++ ++.||.||+++...
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 568999999999998777787877666 68999999999754
No 128
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=84.84 E-value=2.4 Score=41.45 Aligned_cols=41 Identities=34% Similarity=0.550 Sum_probs=32.9
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcC--C--cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEG--G--KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~--g--~~~~ad~VI~t~p~ 152 (365)
+++|+++++|++|..+++++.|+..+ | +++.+|.||+++..
T Consensus 238 gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred CcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 57899999999999877777766544 3 46899999999864
No 129
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=84.81 E-value=2.7 Score=41.27 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=33.4
Q ss_pred cCCeecCceeEEEEecCCe-eEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|...+++ +.|++.+|+++.+|.||+++-.
T Consensus 245 GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 245 GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 5679999999999876554 5677778888999999998763
No 130
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.73 E-value=2.5 Score=41.22 Aligned_cols=41 Identities=34% Similarity=0.467 Sum_probs=32.3
Q ss_pred cCCeecCceeEEEEecCCeeEEEEc--CC--cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~--~g--~~~~ad~VI~t~p~ 152 (365)
+++|++|++|++|...++++.|++. +| +++.||.||+++..
T Consensus 227 gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 227 GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 5789999999999877666665543 66 46999999999763
No 131
>PTZ00052 thioredoxin reductase; Provisional
Probab=84.70 E-value=2.8 Score=41.37 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=34.8
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++++++++.|.+|...++.+.|.+.+|+++.+|.||+++..
T Consensus 236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR 276 (499)
T ss_pred CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC
Confidence 57899999999998766667777778888999999999874
No 132
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=84.58 E-value=2.8 Score=41.59 Aligned_cols=52 Identities=33% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHHh---cc--C--CeecCceeEEEEecC-----CeeEEEEcCC---cEEEcCEEEEecChhh
Q 017808 103 LPVINTLA---KG--L--DIRLGHRVTKITRHY-----IGVKVTVEGG---KTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~---~~--l--~I~l~~~V~~I~~~~-----~~v~V~~~~g---~~~~ad~VI~t~p~~~ 154 (365)
..+.+.|. +. + .|++|++|++|++.+ ++|.|++.++ ++..+|+||+|+-...
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 55666664 33 3 399999999999865 3588887644 2356999999987543
No 133
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=84.53 E-value=2.2 Score=42.47 Aligned_cols=43 Identities=35% Similarity=0.411 Sum_probs=36.0
Q ss_pred cCCeecCceeEEEEecCCeeEEEEc--CC--cEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~--~g--~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|++|+.++++|+|++. +| ++++||.||-|--..-
T Consensus 128 gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 128 HVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANS 174 (538)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCch
Confidence 5689999999999999999888765 56 4789999999887654
No 134
>PRK11445 putative oxidoreductase; Provisional
Probab=83.80 E-value=3.4 Score=38.57 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=36.1
Q ss_pred hccCCeecCceeEEEEecCCeeEEEE-cCCc--EEEcCEEEEecChh
Q 017808 110 AKGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 110 ~~~l~I~l~~~V~~I~~~~~~v~V~~-~~g~--~~~ad~VI~t~p~~ 153 (365)
..++++++++.|++|...++++.|++ .+|+ +++||.||.|.-..
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 34678999999999999888888775 5664 68999999988764
No 135
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=83.05 E-value=3.5 Score=39.78 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=32.8
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++++++++|++|..+++++.+++ +|+++.+|.||+++..
T Consensus 212 GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 212 GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 678999999999988766676654 5668999999998753
No 136
>PRK06475 salicylate hydroxylase; Provisional
Probab=83.03 E-value=3.3 Score=39.44 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=34.2
Q ss_pred cCCeecCceeEEEEecCCeeEEEE---cCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~---~~g~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|+++..++++|.|+. .+++++.||.||-|--..-
T Consensus 122 ~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 122 GIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred CcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 357999999999998888887765 3345789999998877654
No 137
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=82.62 E-value=3.1 Score=43.47 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=34.7
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|..++....|++.||+++.||.||+++..
T Consensus 196 GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 196 GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 67899999999998655555688889999999999999874
No 138
>PRK14694 putative mercuric reductase; Provisional
Probab=82.33 E-value=3.8 Score=39.99 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=32.8
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++++++++.|++|..+++.+.+.+.++ ++.+|.||+++..
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 271 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGR 271 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCC
Confidence 567999999999988777677776555 7999999999864
No 139
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=81.92 E-value=2.5 Score=39.43 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCeecCceeEEEEecCC-eeEEEEcC-----CcEEEcCEEEEecC
Q 017808 113 LDIRLGHRVTKITRHYI-GVKVTVEG-----GKTFVADAVVVAVP 151 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~~-~v~V~~~~-----g~~~~ad~VI~t~p 151 (365)
+.|+.+++|+.++..++ ++.+++.+ ..++.+|+||+||-
T Consensus 294 ~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred eEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 46899999999999885 88887765 24689999999985
No 140
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=81.59 E-value=1.9 Score=40.71 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=30.2
Q ss_pred hCCCCCEEEeccccCC-CCcc--hhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM-SYPG--SVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~-~~~g--~v~gA~~SG~~aA~~i~~~ 335 (365)
..-+++||||||-+.. +..| .++-|+.||..|++.+...
T Consensus 333 Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~ 374 (376)
T TIGR03862 333 LKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSW 374 (376)
T ss_pred cccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4457899999999774 2233 6889999999999887654
No 141
>PRK12831 putative oxidoreductase; Provisional
Probab=81.42 E-value=1.8 Score=42.28 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=34.1
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
+.+..+++|.+||...+ +..+..|+..|+.||..|.+.|..
T Consensus 422 ~~Ts~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 422 GLTSKEGVFAGGDAVTG--AATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CccCCCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHhcC
Confidence 34557899999999865 458899999999999999888754
No 142
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=81.34 E-value=3.6 Score=40.63 Aligned_cols=44 Identities=36% Similarity=0.284 Sum_probs=35.4
Q ss_pred ccCCeecCceeEEEEecCCeeEEEEcC---Cc--EEEcCEEEEecChhh
Q 017808 111 KGLDIRLGHRVTKITRHYIGVKVTVEG---GK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 111 ~~l~I~l~~~V~~I~~~~~~v~V~~~~---g~--~~~ad~VI~t~p~~~ 154 (365)
.+++|+++++|++|..+++.+.|++.+ |+ ++.|+.||.|+.+..
T Consensus 168 ~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 168 RGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred cCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 367899999999999887777776553 53 689999999998754
No 143
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=80.83 E-value=5.2 Score=37.87 Aligned_cols=52 Identities=29% Similarity=0.316 Sum_probs=38.3
Q ss_pred CChHHHHHHHhcc---CCeecCceeEEEEecCCeeE-EEEcCCcEEEcCEEEEecCh
Q 017808 100 RGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 100 gG~~~L~~~L~~~---l~I~l~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~t~p~ 152 (365)
.-+...++...+. +.| ....|+.|..++++|. |.+.+|+.+.||.||+|+-.
T Consensus 95 ~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 95 DKYSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 3455555544443 455 4678999999888875 99999999999999999987
No 144
>PRK06370 mercuric reductase; Validated
Probab=80.57 E-value=4.9 Score=39.13 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=31.7
Q ss_pred cCCeecCceeEEEEecCCeeEEEE--c-CCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTV--E-GGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~--~-~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|.+|...++++.|+. . ++.++.+|.||+++..
T Consensus 226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 568999999999998776655443 2 3457999999999864
No 145
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=80.43 E-value=4.9 Score=39.45 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=33.0
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCC---cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|...++++.|+..+| +++.||.||+++..
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 568999999999987776766766555 37999999999874
No 146
>PRK13748 putative mercuric reductase; Provisional
Probab=80.16 E-value=4.7 Score=40.33 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=33.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|++|..+++.+.+.+.++ ++.+|.||+++..
T Consensus 324 gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC
Confidence 568999999999988777777777666 6999999999864
No 147
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=80.02 E-value=5.1 Score=38.64 Aligned_cols=42 Identities=31% Similarity=0.287 Sum_probs=30.8
Q ss_pred cCCeecCceeEEEEecCC-e---eEEEEcCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYI-G---VKVTVEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~-~---v~V~~~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|+++++|++|..+++ + |.+.+.+++ .+.++.||+|+-..
T Consensus 144 gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 144 GIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred CCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 578999999999998643 3 344445554 46899999998643
No 148
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=79.70 E-value=5 Score=39.21 Aligned_cols=46 Identities=35% Similarity=0.405 Sum_probs=34.6
Q ss_pred HHHhccCCeecCceeEEEEecCCeeEEEEcCC----cEEEcCEEEEecCh
Q 017808 107 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGG----KTFVADAVVVAVPL 152 (365)
Q Consensus 107 ~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g----~~~~ad~VI~t~p~ 152 (365)
+.|.+.++|++++.|++|+..++++.|++.++ +++.||.||+++..
T Consensus 223 ~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 223 KRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred HHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 33433467999999999998777777765432 36999999999875
No 149
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=79.12 E-value=3.6 Score=44.22 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=34.5
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
+.+.++++|.+||.+.+ +.++..|+..|++||..|.+.|..
T Consensus 716 ~~Ts~pgVFAaGDv~~G--~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTG--GATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCCC--ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667899999999865 458899999999999999988764
No 150
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.08 E-value=4.7 Score=39.75 Aligned_cols=44 Identities=25% Similarity=0.127 Sum_probs=36.0
Q ss_pred ccCCeecCceeEEEEecCCeeEEEEcCC----cEEEcCEEEEecChhh
Q 017808 111 KGLDIRLGHRVTKITRHYIGVKVTVEGG----KTFVADAVVVAVPLGV 154 (365)
Q Consensus 111 ~~l~I~l~~~V~~I~~~~~~v~V~~~~g----~~~~ad~VI~t~p~~~ 154 (365)
.+.+|+.+++|++|..+++.+.|++.++ .++.|+.||.|+.+..
T Consensus 168 ~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 168 RGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred CCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 3678999999999998887777776554 3589999999999754
No 151
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=78.97 E-value=5.6 Score=38.72 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=32.0
Q ss_pred cCCeecCceeEEEEecCCeeEEEEc---CCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVE---GGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~---~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|++|..+++++.|++. +++++.+|.||+++..
T Consensus 221 gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 221 GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 5789999999999887666655543 2357999999999863
No 152
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=78.64 E-value=7.7 Score=35.47 Aligned_cols=91 Identities=13% Similarity=0.256 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHh-hhhhcCCCCcccChhcccc--------ccccCCC-ceeccCChHHHHHHHhc--cCCeecCceeEE
Q 017808 56 GLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--------EELLPGG-HGLMVRGYLPVINTLAK--GLDIRLGHRVTK 123 (365)
Q Consensus 56 ~~~~~~~~~~~~~-~~~~~g~~~~~~S~~~~~~--------~~~~~g~-~~~~~gG~~~L~~~L~~--~l~I~l~~~V~~ 123 (365)
-+++.+.+.++.. ..--||.+|+++.+...-. ...+... ...+++|+-.+.+.|.+ .++|+||+.-..
T Consensus 141 ~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~ 220 (374)
T COG0562 141 LVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTDFFD 220 (374)
T ss_pred HHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCCCceEEecCcHHH
Confidence 3677788877775 5667999999998854320 1122222 34678999999999998 789999987776
Q ss_pred EEecCCeeEEEEcCCcEEEcCEEEEecChhhhh
Q 017808 124 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 156 (365)
Q Consensus 124 I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~l~ 156 (365)
|.....+ ..+..||.|.|+..+-
T Consensus 221 ~~~~~~~----------~~~~~VvytG~iD~~F 243 (374)
T COG0562 221 VKDQLRA----------IPFAPVVYTGPIDAYF 243 (374)
T ss_pred Hhhhhcc----------cCCCceEEecchHhhh
Confidence 6533221 4566999999988753
No 153
>PRK08244 hypothetical protein; Provisional
Probab=78.57 E-value=5.6 Score=39.07 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=34.1
Q ss_pred cCCeecCceeEEEEecCCeeEEEEc--CC-cEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVE--GG-KTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~--~g-~~~~ad~VI~t~p~~ 153 (365)
+++|+++++|++|..++++|.|+.. +| ++++||.||.|--..
T Consensus 114 gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 114 GVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred CCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 5689999999999998888876643 46 479999999988653
No 154
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=78.49 E-value=5.1 Score=38.56 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|++|.. ++ |++.+|+++.||.||+++..
T Consensus 242 gV~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 242 GVDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccCC
Confidence 678999999999964 33 55778999999999999763
No 155
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=78.31 E-value=5.6 Score=38.23 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=31.6
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++++++++.|.+|..++ .+ +.+.+|+++.||.||++++.
T Consensus 193 gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 193 EINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGI 231 (427)
T ss_pred CCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCc
Confidence 57899999999997643 33 45567889999999999875
No 156
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.25 E-value=5.7 Score=38.78 Aligned_cols=41 Identities=39% Similarity=0.532 Sum_probs=31.6
Q ss_pred cCCeecCceeEEEEecCCeeEEEEc-----CCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVE-----GGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~-----~g~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|..+++++.++.. +++++.+|.||+++..
T Consensus 229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC
Confidence 5789999999999877667655432 2357999999999864
No 157
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=78.19 E-value=6.8 Score=38.69 Aligned_cols=40 Identities=38% Similarity=0.405 Sum_probs=30.7
Q ss_pred cCCeecCceeEEEEecCCee---EEEEcCC--cEEEcCEEEEecC
Q 017808 112 GLDIRLGHRVTKITRHYIGV---KVTVEGG--KTFVADAVVVAVP 151 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v---~V~~~~g--~~~~ad~VI~t~p 151 (365)
+++|+++++|++|..++++| .+...+| .++.||.||+|+-
T Consensus 204 gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 204 KIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred CCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 57899999999998766654 3444454 3689999999996
No 158
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=78.06 E-value=1.8 Score=40.73 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=37.2
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++.|+-|+.|+++......+.+...||.+++.|.||+++-.
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence 56899999999999988889999999999999999999853
No 159
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=78.00 E-value=4.8 Score=37.66 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=30.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++++++++.|++|.. + .|++.+|+++.+|.||++++.
T Consensus 205 gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 205 GIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 678999999999853 2 466678889999999999874
No 160
>PRK06175 L-aspartate oxidase; Provisional
Probab=77.60 E-value=6.6 Score=37.93 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=34.4
Q ss_pred HHHHHHHhc--cCCeecCceeEEEEecCCeeE-EE-EcCCc--EEEcCEEEEecCh
Q 017808 103 LPVINTLAK--GLDIRLGHRVTKITRHYIGVK-VT-VEGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 103 ~~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V~-~~~g~--~~~ad~VI~t~p~ 152 (365)
..|.+.+.+ +++|+++++|+.|..++++|. |. ..+|+ .+.|+.||+|+--
T Consensus 132 ~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 132 KILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 344444442 578999999999987666542 22 23444 5899999999875
No 161
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=77.55 E-value=7.2 Score=36.82 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=33.8
Q ss_pred cCCeecCceeEEEEec-CCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~-~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
++++ ++..|..+..+ ++.+.|++.+|++++||.||.|....-
T Consensus 99 gv~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 99 GVLW-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred CcEE-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 3455 46688888877 566788888888899999999999764
No 162
>PRK06126 hypothetical protein; Provisional
Probab=77.54 E-value=5.2 Score=39.88 Aligned_cols=43 Identities=40% Similarity=0.543 Sum_probs=34.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEc---CCc--EEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVE---GGK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~---~g~--~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|++|..++++|.++.. +|+ ++.||.||.|.-..-
T Consensus 141 ~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 141 GVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 4689999999999998888776643 354 689999999987654
No 163
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=77.50 E-value=5.2 Score=38.22 Aligned_cols=53 Identities=36% Similarity=0.414 Sum_probs=35.8
Q ss_pred ChHHHHHHHhc-----cCCeecCceeEEEEecCCeeE-EEE---cCCc--EEEcCEEEEecChh
Q 017808 101 GYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTV---EGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 101 G~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~---~~g~--~~~ad~VI~t~p~~ 153 (365)
+...+++.|.+ +++|+++++|+++..++++|+ |.. .+|+ .+.|++||+|+--.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~ 202 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGF 202 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence 44566666655 358999999999999888764 443 3564 57899999998643
No 164
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=77.06 E-value=6.6 Score=41.44 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=33.8
Q ss_pred cCCeecCceeEEEEecCC--eeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYI--GVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~--~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|..+++ ...|++.+|+++.+|.||+++..
T Consensus 201 GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 201 GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 678999999999986532 34577889999999999999964
No 165
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=76.82 E-value=7.9 Score=37.67 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=31.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCC--cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g--~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|+..++.+.+.. +| .++.||.||+++..
T Consensus 225 GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 225 GVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred CCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCC
Confidence 578999999999987666665554 34 36899999999874
No 166
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=76.70 E-value=7.2 Score=37.64 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=30.2
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|+++++|.+|..+++.+.+.+.++ ++.||.||+++..
T Consensus 205 gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~ 244 (444)
T PRK09564 205 GVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGV 244 (444)
T ss_pred CCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCC
Confidence 578999999999975443334555544 7999999998874
No 167
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=74.95 E-value=7.9 Score=37.69 Aligned_cols=54 Identities=26% Similarity=0.268 Sum_probs=37.6
Q ss_pred cCChHHHHHHHhc-----cCCeecCceeEEEEecCCeeE-EEE--cCC--cEEEcCEEEEecCh
Q 017808 99 VRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTV--EGG--KTFVADAVVVAVPL 152 (365)
Q Consensus 99 ~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~--~~g--~~~~ad~VI~t~p~ 152 (365)
.+|...+.+.|.+ +++|+++++|++|..++++|. |.+ .+| ..+.|+.||+|+-.
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 3444556665643 568999999999988766654 444 233 35799999999863
No 168
>PRK07538 hypothetical protein; Provisional
Probab=74.72 E-value=7.1 Score=37.31 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=32.3
Q ss_pred CeecCceeEEEEecCCeeEEEEcCC-----cEEEcCEEEEecChhh
Q 017808 114 DIRLGHRVTKITRHYIGVKVTVEGG-----KTFVADAVVVAVPLGV 154 (365)
Q Consensus 114 ~I~l~~~V~~I~~~~~~v~V~~~~g-----~~~~ad~VI~t~p~~~ 154 (365)
.|+++++|+++..+++++.+.+.++ ++++||.||-|--..-
T Consensus 120 ~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 120 AVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred EEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 5999999999998888766665443 4799999998887644
No 169
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=74.59 E-value=9.7 Score=37.18 Aligned_cols=42 Identities=36% Similarity=0.414 Sum_probs=31.5
Q ss_pred cCCeecCceeEEEEe-cCCeeE-EEEcCC--cEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITR-HYIGVK-VTVEGG--KTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~-~~~~v~-V~~~~g--~~~~ad~VI~t~p~~ 153 (365)
+++|++++.|++|.. .++++. +.+.+| +++.+|.||+++...
T Consensus 235 gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 578999999999986 234444 445566 368999999999754
No 170
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=74.34 E-value=7.6 Score=38.45 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=33.3
Q ss_pred cCCeecCceeEEEEecCCeeE-EEE---cCC--cEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTV---EGG--KTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~---~~g--~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|++|..+++++. |++ .+| .++.|+.||.|+.+..
T Consensus 142 Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 142 GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 678999999999998777643 443 234 3689999999998764
No 171
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=73.42 E-value=4.2 Score=36.23 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCCEEEeccccCC-----CCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 300 VDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 300 ~~~l~~aG~~~~~-----~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
+|+||.||-+..- ..+...-|-+.||++||+.|++.|.
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 5899999988653 2223566678899999999998875
No 172
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=73.28 E-value=6.9 Score=35.95 Aligned_cols=43 Identities=44% Similarity=0.528 Sum_probs=32.0
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcC---C--cEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEG---G--KTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~---g--~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|..+..+.+++.+...+ | ++++||.||-|--..-
T Consensus 125 gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 125 GVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp TEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred hhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 46799999999999998887655433 3 3689999998876543
No 173
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=73.20 E-value=9.9 Score=38.30 Aligned_cols=42 Identities=26% Similarity=0.189 Sum_probs=30.7
Q ss_pred cCCeecCceeEEEEecCCee---EEEEcCCc-EEEc-CEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGV---KVTVEGGK-TFVA-DAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v---~V~~~~g~-~~~a-d~VI~t~p~~ 153 (365)
+++|+++++|++|..++++| .+.+.++. ++.| +.||+|+-..
T Consensus 231 Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 231 GVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 56899999999988766654 33334443 4788 9999998654
No 174
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=72.83 E-value=4 Score=38.06 Aligned_cols=46 Identities=35% Similarity=0.484 Sum_probs=31.9
Q ss_pred HHHHhccC--CeecCceeEEEEecCCe----eEEEEc----CCcEEEcCEEEEecC
Q 017808 106 INTLAKGL--DIRLGHRVTKITRHYIG----VKVTVE----GGKTFVADAVVVAVP 151 (365)
Q Consensus 106 ~~~L~~~l--~I~l~~~V~~I~~~~~~----v~V~~~----~g~~~~ad~VI~t~p 151 (365)
.+-.++.+ .++++++|++|....++ +.|++. +++++.|++||+++.
T Consensus 101 l~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 101 LRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred HHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 33334444 39999999999987653 788873 457899999999886
No 175
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=72.77 E-value=10 Score=36.75 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=30.6
Q ss_pred cCCeecCceeEEEEecCC-eeEEEEcCC--cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYI-GVKVTVEGG--KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~-~v~V~~~~g--~~~~ad~VI~t~p~ 152 (365)
.++|+++++|.+|+..++ ++.++..+| +++.+|.||+++..
T Consensus 223 ~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 223 EFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred ccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 377999999999987654 455543333 56999999998764
No 176
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=72.66 E-value=9.2 Score=38.20 Aligned_cols=43 Identities=33% Similarity=0.200 Sum_probs=33.3
Q ss_pred cCCeecCceeEEEEecCCeeE-EEE---cCC--cEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTV---EGG--KTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~---~~g--~~~~ad~VI~t~p~~~ 154 (365)
+++|+++++|++|..++++|. |++ .+| .++.||.||.|+.+..
T Consensus 163 Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 163 GAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 678999999999998877653 443 233 3689999999998764
No 177
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=72.47 E-value=8 Score=37.48 Aligned_cols=39 Identities=36% Similarity=0.249 Sum_probs=32.5
Q ss_pred CeecCceeEEEEecCC--eeEEEEcCCcEE--EcCEEEEecCh
Q 017808 114 DIRLGHRVTKITRHYI--GVKVTVEGGKTF--VADAVVVAVPL 152 (365)
Q Consensus 114 ~I~l~~~V~~I~~~~~--~v~V~~~~g~~~--~ad~VI~t~p~ 152 (365)
.|++++.|+.+.++.+ .|+|++.+|.+. .||.||+|+-.
T Consensus 100 ~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 100 QIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred EEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 5999999999887764 589999988664 59999999976
No 178
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=72.43 E-value=10 Score=37.88 Aligned_cols=50 Identities=28% Similarity=0.392 Sum_probs=37.1
Q ss_pred HHHHHhc--cCCeecCceeEEEEecCCeeEEEE--cCCc-EEEcCEEEEecChhh
Q 017808 105 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTV--EGGK-TFVADAVVVAVPLGV 154 (365)
Q Consensus 105 L~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~--~~g~-~~~ad~VI~t~p~~~ 154 (365)
|.+++.+ +++|+++++|++++.++++|.++. .+|. +++||.||.|....-
T Consensus 131 L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 131 LVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARS 185 (547)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCc
Confidence 3444443 467999999999999988877654 3554 689999999987543
No 179
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=72.34 E-value=9.2 Score=36.97 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=32.9
Q ss_pred HHHHHhc-cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 105 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 105 L~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+.+.|.+ +++++++++|++|.. . .|++.+|+++.+|.||++++.
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC
Confidence 3444433 578999999999963 2 456677888999999999874
No 180
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=72.21 E-value=4.2 Score=35.11 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCCEEEeccccCC-----CCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 300 VDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 300 ~~~l~~aG~~~~~-----~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
.+|||+||-+.+- ..+...-|-+.||+.+|+.|+++|.
T Consensus 218 ~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 218 YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 5899999988652 2223566678999999999998875
No 181
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=72.08 E-value=11 Score=37.95 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=35.7
Q ss_pred ccCChHHHHHHHhc-----cCCeecCceeEEEEecCCeeE-EE-EcCCc--EEEc-CEEEEecCh
Q 017808 98 MVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VT-VEGGK--TFVA-DAVVVAVPL 152 (365)
Q Consensus 98 ~~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~-~~~g~--~~~a-d~VI~t~p~ 152 (365)
..+| ..|+..|.+ +++|+++++|+++..++++|. |. ..+|+ .+.| +.||+|+--
T Consensus 213 ~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGG 276 (564)
T PRK12845 213 AAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGG 276 (564)
T ss_pred cCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCC
Confidence 3455 777777754 568999999999886555543 32 23443 3556 579998864
No 182
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=72.02 E-value=7.6 Score=37.30 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=33.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcC-CcEEE--cCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEG-GKTFV--ADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~-g~~~~--ad~VI~t~p~ 152 (365)
++++++++.|++|...++.+.+...+ ++++. +|+||+|+-.
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC
Confidence 66788999999999888877776543 45778 9999999975
No 183
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=71.69 E-value=7 Score=37.16 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=33.6
Q ss_pred ccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 111 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 111 ~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
.++++++++.|..|..... .|++.+|+++.+|++|+|+-..
T Consensus 71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCC
Confidence 4678999999999987654 3556788899999999999754
No 184
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=71.43 E-value=5.6 Score=35.37 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCCEEEeccccCC-----CCcchhHHHHHHHHHHHHHHHHHH
Q 017808 300 VDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 300 ~~~l~~aG~~~~~-----~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
+|+||.||-+..- ..+...-|-+.||++||+.|++.|
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 5899999988653 222366667889999999999875
No 185
>PLN02697 lycopene epsilon cyclase
Probab=71.37 E-value=11 Score=37.49 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=33.8
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
++++ ++++|++|..+++++. |++.+|.++.|+.||.|.-..-
T Consensus 206 GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 206 GVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred CCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 4556 7889999998877765 4567888999999999988754
No 186
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=71.31 E-value=8 Score=36.81 Aligned_cols=43 Identities=40% Similarity=0.604 Sum_probs=32.7
Q ss_pred HHHhc-cCCeecCceeEEEEecCCeeEEEEcCCc-EEEcCEEEEecChh
Q 017808 107 NTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLG 153 (365)
Q Consensus 107 ~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~g~-~~~ad~VI~t~p~~ 153 (365)
+.|.+ +++|+++++|++|+.+ + |++.+|+ ++.++.||.|+-..
T Consensus 217 ~~L~~~GV~v~l~~~Vt~v~~~--~--v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 217 RALEKLGVEVLLGTPVTEVTPD--G--VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHCCCEEEcCCceEEECCC--c--EEEccCCeeEecCEEEEcCCCc
Confidence 34443 6789999999999754 3 5556676 59999999998754
No 187
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.24 E-value=6.3 Score=40.19 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=34.5
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 339 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~ 339 (365)
+++..+++|.+||...+ ...+.-|+..|++||..|...|.+.
T Consensus 596 ~~Ts~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred cccCCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567899999998865 4578899999999999999887543
No 188
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=71.14 E-value=6.3 Score=38.55 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=33.3
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
+.+..+++|.+||.+.+ ...+..|+..|+.||..|.+.|.
T Consensus 426 ~~Ts~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 426 YQTSNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccCCCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHh
Confidence 44567899999999875 34788999999999999998875
No 189
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=70.87 E-value=7.3 Score=35.18 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=33.1
Q ss_pred HHHHHhc-cCCeecCceeEEEEec--CCe---eEEEEcCCc----EEEcCEEEEecCh
Q 017808 105 VINTLAK-GLDIRLGHRVTKITRH--YIG---VKVTVEGGK----TFVADAVVVAVPL 152 (365)
Q Consensus 105 L~~~L~~-~l~I~l~~~V~~I~~~--~~~---v~V~~~~g~----~~~ad~VI~t~p~ 152 (365)
|..++.+ .++|++++.|++|..+ +.+ |.+...++. .+.++.||++.-.
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGa 256 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGA 256 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHH
T ss_pred cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCC
Confidence 4555555 6789999999999664 433 455555554 4678999999864
No 190
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=70.38 E-value=5.3 Score=38.79 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=31.1
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
+++..+++|.+||.+.. +..+.-|+..|+.||..|.+.
T Consensus 411 ~~Ts~~~VfA~GD~~~g--~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILG--AATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CccCCCCEEEecCCCCC--cHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999864 457889999999999998764
No 191
>PRK08071 L-aspartate oxidase; Provisional
Probab=69.78 E-value=8.4 Score=38.09 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHHhccCCeecCceeEEEEecCCeeE-EEE--cCCc--EEEcCEEEEecCh
Q 017808 107 NTLAKGLDIRLGHRVTKITRHYIGVK-VTV--EGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 107 ~~L~~~l~I~l~~~V~~I~~~~~~v~-V~~--~~g~--~~~ad~VI~t~p~ 152 (365)
+.+..+++|+.+++|.+|..+++.|. |.+ .+|+ .+.|+.||+|+--
T Consensus 138 ~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 138 QELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 33334678999999999987666543 433 3443 5789999999965
No 192
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=69.75 E-value=11 Score=35.65 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=32.8
Q ss_pred cCCeecCceeEEEEe-cCCeeEEEE-cCCc--EEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITR-HYIGVKVTV-EGGK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~-~~~~v~V~~-~~g~--~~~ad~VI~t~p~~~ 154 (365)
+++++++++|++|+. +++++.|+. .+|+ +++||.||-|--..-
T Consensus 117 gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 117 GGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred CCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCC
Confidence 568999999999987 566676766 4664 689998888776543
No 193
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.66 E-value=6.7 Score=40.11 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=33.4
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
+.+..+++|.+||...+ ...+..|+..|+.||..|.+.|.
T Consensus 613 ~~Ts~~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cccCCCCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhC
Confidence 35567899999999865 45788999999999999988764
No 194
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=69.62 E-value=9 Score=35.07 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCeecCceeEEEEecCCeeE-EEE--cCC--cEEEcCEEEEecCh
Q 017808 113 LDIRLGHRVTKITRHYIGVK-VTV--EGG--KTFVADAVVVAVPL 152 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~~~v~-V~~--~~g--~~~~ad~VI~t~p~ 152 (365)
++|.+|++|+.|..++++|. |.+ .+| ..+.+|+||+++--
T Consensus 160 ~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 160 VKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred HhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCC
Confidence 36999999999998887764 443 345 35789999998864
No 195
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=69.14 E-value=9.8 Score=36.73 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=33.8
Q ss_pred cCCeecCceeEEEEecCCeeEEEEc-CCcEEE--cCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVE-GGKTFV--ADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~-~g~~~~--ad~VI~t~p~~ 153 (365)
++++++++.|.+|..+++.|.+... +|+++. +|++|+|+-..
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 6778899999999988888877652 355676 99999999764
No 196
>PTZ00058 glutathione reductase; Provisional
Probab=69.02 E-value=14 Score=36.96 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=30.9
Q ss_pred cCCeecCceeEEEEecCC-eeEEEEcCC-cEEEcCEEEEecC
Q 017808 112 GLDIRLGHRVTKITRHYI-GVKVTVEGG-KTFVADAVVVAVP 151 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~-~v~V~~~~g-~~~~ad~VI~t~p 151 (365)
+++|++++.|.+|...++ ++.+...++ +++.+|.||+++.
T Consensus 292 GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G 333 (561)
T PTZ00058 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG 333 (561)
T ss_pred CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC
Confidence 578999999999987544 466554444 5799999999976
No 197
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=68.75 E-value=13 Score=34.08 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=33.1
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
+++.++++|-|||-+...+. -+-.|.-.|-.||..+.+.+..
T Consensus 261 ~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 261 METSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred cccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhh
Confidence 56778999999999987543 5677788899999888777643
No 198
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=68.34 E-value=10 Score=35.69 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHhccC--CeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 103 LPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L~~~l--~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
..+.+.|.+.+ .|+++++|.+| +.++|++ .+|+++.||.||-+.+..
T Consensus 89 ~~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 89 TRFHEGLLQAFPEGVILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHHHhhcccEEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCC
Confidence 33444443322 38889999999 4555555 688899999999999865
No 199
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=67.87 E-value=15 Score=36.96 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=31.1
Q ss_pred hCCCCCEEEeccccCC----CCc--c-hhHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~~~l~ 337 (365)
-+|+++||-||+.+.. .|+ | ++-.|+.+|+.|++.+.+...
T Consensus 521 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 521 GTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred CCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 4689999999987542 222 2 577799999999999877654
No 200
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=67.66 E-value=0.96 Score=38.46 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=47.9
Q ss_pred hhhhcCCCCcccChhccc---c-----ccccCCC-ceeccCChHHHHHHHh--ccCCeecCceeEEEEecCCeeEEEEcC
Q 017808 69 MEGWFAADAETISLKSWD---K-----EELLPGG-HGLMVRGYLPVINTLA--KGLDIRLGHRVTKITRHYIGVKVTVEG 137 (365)
Q Consensus 69 ~~~~~g~~~~~~S~~~~~---~-----~~~~~g~-~~~~~gG~~~L~~~L~--~~l~I~l~~~V~~I~~~~~~v~V~~~~ 137 (365)
..-.||.+++++++...- . ...+... ...+++|+..+.+.|. ..++|+||+....+.. .
T Consensus 7 T~KQWg~~p~eL~~~v~~RvPvr~~~d~~YF~d~yQgiP~~GYT~~fe~mL~h~~I~v~l~td~~~~~~----------~ 76 (204)
T PF03275_consen 7 TKKQWGVDPEELDASVIKRVPVRFSYDDRYFNDKYQGIPKDGYTKMFENMLDHPNIEVRLNTDFFDIIE----------F 76 (204)
T ss_dssp HHHHHTSSGGGSBCCCCSCS-BBSSS--BS--SSEEEEETTHHHHHHHHHC-STTEEEECS--GGGCHH----------H
T ss_pred CHHHcCCChHHCCHHHhcCCceeeCCCCccccChhhhCchhCHHHHHHHHhCCCceEEEcCCCHHHhhc----------c
Confidence 344578888888874321 1 1112222 3467999999999998 4778999885554433 1
Q ss_pred CcEEEcCEEEEecChhhhh
Q 017808 138 GKTFVADAVVVAVPLGVLK 156 (365)
Q Consensus 138 g~~~~ad~VI~t~p~~~l~ 156 (365)
+....+++||.|.|+..+-
T Consensus 77 ~~~~~~~~viyTG~iDe~F 95 (204)
T PF03275_consen 77 GGEPYADKVIYTGPIDEYF 95 (204)
T ss_dssp HCCCTEEEEEE-S-HHHHT
T ss_pred cccccCCeEEEeCCHHHHh
Confidence 1234579999999999874
No 201
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=66.92 E-value=8.7 Score=40.23 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=33.7
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++++++|++|..... .|++.+|+++.+|++|+|+-..
T Consensus 68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence 678999999999987643 4677889899999999999854
No 202
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=66.72 E-value=8.6 Score=37.38 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=32.9
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
.+..+++|.+||...+ ...+.-|+..|+.||..|.+.|.+
T Consensus 414 ~Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 414 RTSLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred ccCCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456899999998854 357888999999999999988754
No 203
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=66.49 E-value=16 Score=36.81 Aligned_cols=41 Identities=27% Similarity=0.508 Sum_probs=30.0
Q ss_pred hCCCCCEEEeccccCC----CCc--c-hhHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~~~l~ 337 (365)
-+|++|||-||+.+.. .|. | ++-.|+..|+.|++.+.+.+.
T Consensus 526 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 526 GQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 4689999999987643 222 2 455689999999998876643
No 204
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=65.27 E-value=14 Score=36.23 Aligned_cols=51 Identities=24% Similarity=0.117 Sum_probs=35.2
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecCCeeE-EEEcC-C--cEEEcCEEEEecChhh
Q 017808 104 PVINTLAK--GLDIRLGHRVTKITRHYIGVK-VTVEG-G--KTFVADAVVVAVPLGV 154 (365)
Q Consensus 104 ~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V~~~~-g--~~~~ad~VI~t~p~~~ 154 (365)
.|.+.+.+ +++|++++.|++|..++++|. |.+.+ + ..+.|+.||+|+-...
T Consensus 133 ~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 133 TLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 34444443 578999999999987666554 44332 3 3689999999997643
No 205
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=64.93 E-value=9.2 Score=38.38 Aligned_cols=42 Identities=21% Similarity=0.066 Sum_probs=31.0
Q ss_pred cCCeecCceeEEEEecCCeeE-EE---EcCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~---~~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|..+++|+++..++++|. |. ..+|+ .+.|++||+|+--.
T Consensus 133 gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 133 DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 568999999999887665543 33 23564 57899999999753
No 206
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=64.21 E-value=76 Score=30.20 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=29.5
Q ss_pred CeecCc------eeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 114 DIRLGH------RVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 114 ~I~l~~------~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
.|+++. .+.+|+..+....|++.||.++++|-+|-+=-.
T Consensus 117 ~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa 161 (420)
T KOG2614|consen 117 TIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGA 161 (420)
T ss_pred eeecccccccccccceeeecccccceecCCCcEEEeeEEEEcCch
Confidence 377774 666777777778899999999999987744433
No 207
>PRK10262 thioredoxin reductase; Provisional
Probab=64.08 E-value=14 Score=33.83 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=29.0
Q ss_pred cCCeecCceeEEEEecCCee-EEEEcC------CcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGV-KVTVEG------GKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v-~V~~~~------g~~~~ad~VI~t~p~ 152 (365)
++++++++.|++|..+++++ .|++.+ .+++.+|.||+++..
T Consensus 199 gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 199 NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 45789999999998765443 244332 146899999998864
No 208
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=63.93 E-value=6.8 Score=35.22 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
+..+++|.+||..... +..+..|+..|..||..|.+.
T Consensus 263 t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 263 TSVPGVFAAGDVRDKG-YRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred cCCCCEEEeecccCcc-hhhhhhhhhhHHHHHHHHHhh
Confidence 3467999999998732 346888999999999988764
No 209
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=63.73 E-value=18 Score=34.06 Aligned_cols=41 Identities=37% Similarity=0.627 Sum_probs=31.9
Q ss_pred cCCeecCceeEEEEecCCe-eEEEEcC---C--cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIG-VKVTVEG---G--KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~-v~V~~~~---g--~~~~ad~VI~t~p~ 152 (365)
+++++|+++|..++.++++ |.|+..+ | ++++||.+.+++--
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 5679999999999999884 5555432 2 57899999988864
No 210
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=63.35 E-value=10 Score=38.29 Aligned_cols=39 Identities=28% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCCCEEEeccccCCCCcc-------hhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++||-|||.+..+..| ++-.|+..|++|++.+.+.+
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 5799999999986522222 67789999999999887654
No 211
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=63.30 E-value=12 Score=36.62 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=31.3
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
.+..+++|.+||...+ ...+..|+..|+.||..|.+.|
T Consensus 428 ~T~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred cCCCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHh
Confidence 4457899999999865 3467889999999999988765
No 212
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=63.30 E-value=9.7 Score=37.39 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.8
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
+.+..+++|.+||...+ ...+..|+..|+.||..|.+.|.
T Consensus 440 ~~Ts~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred ceECCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557899999998764 34778899999999999998875
No 213
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=62.81 E-value=8.2 Score=36.34 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=29.3
Q ss_pred hCCCCCEEEeccccCC-CCcc--hhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM-SYPG--SVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~-~~~g--~v~gA~~SG~~aA~~i~~~ 335 (365)
.+-+++||||||-+.- +|-| .+.-|+.||+.|++.+.+.
T Consensus 365 sk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~ 406 (408)
T COG2081 365 SKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAW 406 (408)
T ss_pred hhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 3557899999998664 3333 5678999999999877654
No 214
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=62.79 E-value=20 Score=36.12 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=33.3
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~t~p~~ 153 (365)
++.+ +...|..|..++++|. |.+.+|..+.|+.||+|+-..
T Consensus 115 nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 115 NLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 3555 5678999888777765 888999999999999999863
No 215
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=62.78 E-value=11 Score=37.85 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=33.5
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
.+.++++|.+||.... +.++..|+..|++||..|.+.|..
T Consensus 406 ~ts~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 406 MTGRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred cCCCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHcC
Confidence 4457899999999864 468899999999999999988753
No 216
>PLN02546 glutathione reductase
Probab=62.60 E-value=22 Score=35.68 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=30.8
Q ss_pred cCCeecCceeEEEEecCC-eeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~-~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++|++++.|.+|...++ .+.|.+.+++...+|.||+++..
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~ 348 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR 348 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecc
Confidence 578999999999986544 45676666654558999999864
No 217
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=62.42 E-value=20 Score=33.90 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=39.2
Q ss_pred ceeccCChHHHHHHHhc-----cCCeecCceeEEEEecCCeeEEEEcC-CcEEEcCEEEEec
Q 017808 95 HGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEG-GKTFVADAVVVAV 150 (365)
Q Consensus 95 ~~~~~gG~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~V~~~~-g~~~~ad~VI~t~ 150 (365)
..++..|.+.|++..++ +....||+++.+|....++..+...+ ++...+..||+-.
T Consensus 224 ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dp 285 (440)
T KOG1439|consen 224 YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDP 285 (440)
T ss_pred ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecC
Confidence 34678899999999987 45799999999999855454333333 3456677666543
No 218
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=62.20 E-value=13 Score=34.64 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=31.5
Q ss_pred CCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
+..+++|.+||.+.. +..+..|+..|..||..|.+.|.
T Consensus 313 t~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 313 TSREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred cCCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHHh
Confidence 446799999998764 35788999999999999988763
No 219
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=62.04 E-value=22 Score=35.56 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=28.9
Q ss_pred hCCCCCEEEeccccCC----CCc--c-hhHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~~ 334 (365)
-+|+++||-||+.+.. .|. | ++-.|+.+|+.|++.+.+
T Consensus 511 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 511 GSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 4689999999999742 232 2 456789999999998754
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=61.92 E-value=17 Score=35.91 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=33.3
Q ss_pred HHHHh--ccCCeecCceeEEEEecCCeeE-EEEcC---C--cEEEcCEEEEecCh
Q 017808 106 INTLA--KGLDIRLGHRVTKITRHYIGVK-VTVEG---G--KTFVADAVVVAVPL 152 (365)
Q Consensus 106 ~~~L~--~~l~I~l~~~V~~I~~~~~~v~-V~~~~---g--~~~~ad~VI~t~p~ 152 (365)
.+.|. .+++|++++.|++|..+++++. |++.+ | +++.||.||+++..
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 44444 3678999999999987656553 55432 2 46899999998864
No 221
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=61.78 E-value=22 Score=36.28 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.0
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEc---CCc--EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVE---GGK--TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~---~g~--~~~ad~VI~t~p~ 152 (365)
+++|++++.|+++..++++|. |... +|+ .+.|+.||+|+--
T Consensus 184 gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 184 TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 578999999999987666543 4432 453 5789999999975
No 222
>PLN02661 Putative thiazole synthesis
Probab=61.66 E-value=11 Score=35.21 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=30.7
Q ss_pred CCCEEEeccccCC-----CCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 300 VDNLFFAGEATSM-----SYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 300 ~~~l~~aG~~~~~-----~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
+++||.+|-+..- ..+...-|-+.||+++|+.|++.|..
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 6899999998663 22236667789999999999999863
No 223
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.60 E-value=21 Score=34.63 Aligned_cols=51 Identities=25% Similarity=0.204 Sum_probs=39.5
Q ss_pred HHHHHHH---hccC----CeecCceeEEEEecC-CeeEEEEcCC----cEEEcCEEEEecChh
Q 017808 103 LPVINTL---AKGL----DIRLGHRVTKITRHY-IGVKVTVEGG----KTFVADAVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L---~~~l----~I~l~~~V~~I~~~~-~~v~V~~~~g----~~~~ad~VI~t~p~~ 153 (365)
..+.+.| ++.. .|++++.|.++.... +.|.|.+.++ +...+|.||+|+--.
T Consensus 90 ~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 90 REVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred HHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 4555555 4544 399999999999888 6899988655 367899999998765
No 224
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=61.59 E-value=13 Score=34.93 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=30.9
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++++++|++|..+... |++ +|+.+.+|++|+|+-..
T Consensus 72 gv~~~~~~~V~~id~~~~~--v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQV--VKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred CCEEECCCEEEEEECCCCE--EEE-CCeEEeCCEEEECCCCC
Confidence 5678899999999876553 444 56689999999999853
No 225
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=61.32 E-value=14 Score=35.66 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=33.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcC-Cc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEG-GK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~-g~--~~~ad~VI~t~p~~ 153 (365)
+++++++++|.+|..++..|.+.+.+ ++ ++.+|++|+|+-..
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 67889999999999988888877643 23 36899999999754
No 226
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=60.96 E-value=8.7 Score=32.18 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=36.7
Q ss_pred HHHHHH-hccCCeecCceeEEEEecCCe-----eEE---EEcCCcEEEcCEEEEecChh
Q 017808 104 PVINTL-AKGLDIRLGHRVTKITRHYIG-----VKV---TVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L-~~~l~I~l~~~V~~I~~~~~~-----v~V---~~~~g~~~~ad~VI~t~p~~ 153 (365)
.+.+.+ ..++++++++.|.+|...... +.+ .+.++.++.+|+||+|+-..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 555555 346688999999999888773 222 34456789999999999843
No 227
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=60.94 E-value=1.8e+02 Score=28.93 Aligned_cols=49 Identities=31% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHhccCCeecCceeEEEEecCCeeEEEEcC---Cc--EEEcCEEEEecChhhh
Q 017808 107 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEG---GK--TFVADAVVVAVPLGVL 155 (365)
Q Consensus 107 ~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~---g~--~~~ad~VI~t~p~~~l 155 (365)
++-..+.+|+..++|+++..+++-+.|.+.| |+ +++|+.||-|+-+.+=
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 3334466899999999999998843465544 32 4899999999998763
No 228
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=60.74 E-value=11 Score=39.40 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=32.8
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
.+..+++|.+||...+ +.++.-|+..|++||..|.+.|.
T Consensus 712 ~Ts~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 712 QSSIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556899999999865 45889999999999999988764
No 229
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=60.00 E-value=8.7 Score=36.79 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=24.7
Q ss_pred CCCCCEEEeccccCC-CCcc--hhHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSM-SYPG--SVHGAFSTGLMAAE 330 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~-~~~g--~v~gA~~SG~~aA~ 330 (365)
..++|||||||-+.. +..| .++-|+.||..|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 447899999999874 2222 58999999999986
No 230
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=59.99 E-value=14 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=29.7
Q ss_pred CCEEEeccccC---CCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 301 DNLFFAGEATS---MSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 301 ~~l~~aG~~~~---~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
+|+.++||+-+ |-.++++.-|+.||..||+.+.+.+
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~ 308 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEES 308 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 68999999855 3345799999999999999988654
No 231
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=59.64 E-value=11 Score=35.21 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=31.1
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+++++.+ +|++|..+++ .|.+.+|+++.+|++|+|+-...
T Consensus 68 gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 68 GARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred CCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 5677664 7999987766 46677888899999999997543
No 232
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=59.53 E-value=10 Score=38.17 Aligned_cols=51 Identities=27% Similarity=0.249 Sum_probs=34.3
Q ss_pred HHHHHHHhc-----cCCeecCceeEEEEecCCeeE-EEE--cCCc-EEEcC-EEEEecChh
Q 017808 103 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTV--EGGK-TFVAD-AVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~--~~g~-~~~ad-~VI~t~p~~ 153 (365)
..|.+.|.+ +++|+++++|++|..++++|. |.. .++. .+.++ .||+|+-..
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~ 274 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGF 274 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCc
Confidence 345555533 568999999999998777543 433 3343 46786 799888643
No 233
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=59.39 E-value=12 Score=39.92 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=32.7
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
.+..+++|.+||...+ ...+.-|+..|+.||..|.+.|.
T Consensus 589 ~Ts~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 589 RTSIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred ccCCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999865 45889999999999999987654
No 234
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=59.25 E-value=15 Score=36.83 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=33.3
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhC
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYG 341 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~~~ 341 (365)
++..+++|.+||.+... ...+..|+..|..||..|.+.+.....
T Consensus 270 ~Ts~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~~l~~~~~ 313 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAERYVKELKE 313 (555)
T ss_pred ccCCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHHHHHhhhh
Confidence 34568999999987542 235678999999999999888765443
No 235
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=59.23 E-value=27 Score=34.91 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=28.3
Q ss_pred hCCCCCEEEeccccC------CCC----cchhHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATS------MSY----PGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~------~~~----~g~v~gA~~SG~~aA~~i~~ 334 (365)
-+|+++||-||+... .++ +.++-.|+.+|+.|++.+.+
T Consensus 501 g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 501 GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 368999999999973 112 23567789999999997653
No 236
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.22 E-value=14 Score=37.14 Aligned_cols=40 Identities=25% Similarity=0.195 Sum_probs=30.3
Q ss_pred hCCCCCEEEeccccCCCCcc-------hhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 336 (365)
.+++++||-|||.+..+..| ++-.|+..|++|++.+.+..
T Consensus 372 ~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 372 TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 36799999999986532222 67779999999999887654
No 237
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.92 E-value=27 Score=35.14 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=31.2
Q ss_pred cCCeecCceeEEEEecCCeeE-E---EEcCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-V---TVEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V---~~~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|..++.|.++..++++|. | ...+|+ .+.|++||+|+--.
T Consensus 149 gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 149 GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 568999999999987666543 2 334564 58999999999754
No 238
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=58.56 E-value=15 Score=37.55 Aligned_cols=39 Identities=28% Similarity=0.224 Sum_probs=30.0
Q ss_pred CCCCCEEEeccccCCCCcc-------hhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++||-|||.+..+..| ++-.|+..|++|++.+.+.+
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 6799999999986422222 67888999999999877654
No 239
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=58.29 E-value=15 Score=37.67 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.9
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
+.+..+++|.+||.... +..+..|+..|+.||..|.+.|..
T Consensus 462 ~~Ts~pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 462 LQTSVAGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CcCCCCCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567899999998865 457889999999999999988864
No 240
>PRK07512 L-aspartate oxidase; Provisional
Probab=58.06 E-value=18 Score=35.78 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=30.1
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEc-CCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVE-GGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~-~g~--~~~ad~VI~t~p~~ 153 (365)
+++|+.+++|++|..+++.|. |... +++ .+.|+.||+|+--.
T Consensus 151 gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 151 SITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred CCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 578999999999876666543 3332 232 58999999999753
No 241
>PRK07121 hypothetical protein; Validated
Probab=57.91 E-value=33 Score=33.69 Aligned_cols=51 Identities=29% Similarity=0.307 Sum_probs=34.2
Q ss_pred hHHHHHHHhc-----cCCeecCceeEEEEecCC-eeE-EEEc-CCc--EEEc-CEEEEecCh
Q 017808 102 YLPVINTLAK-----GLDIRLGHRVTKITRHYI-GVK-VTVE-GGK--TFVA-DAVVVAVPL 152 (365)
Q Consensus 102 ~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~-~v~-V~~~-~g~--~~~a-d~VI~t~p~ 152 (365)
...+.+.|.+ +++|+++++|++|..+++ +|. |... +++ .+.| +.||+|+-.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 3445555543 568999999999987643 443 4332 332 4788 999999874
No 242
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=57.53 E-value=31 Score=34.60 Aligned_cols=42 Identities=24% Similarity=0.161 Sum_probs=31.8
Q ss_pred cCCeecCceeEEEEecCCeeE-EE---EcCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~---~~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|+++++|++|..++++|. |. ..+|+ .+.|+.||+|+-..
T Consensus 143 gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 143 GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 678999999999987766653 32 24564 57999999999754
No 243
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=57.44 E-value=16 Score=38.53 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=33.1
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++++++|.+|..... .|++.+|+++.+|++|+|+-..
T Consensus 73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCC
Confidence 678999999999987543 4667888889999999999753
No 244
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=56.75 E-value=16 Score=35.10 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=26.9
Q ss_pred CCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 299 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 299 p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
.++||||||+-+.. -|+. -|..+|..|+..+...+.
T Consensus 329 ~~~~l~~AGqi~g~--~Gy~-ea~a~G~~Ag~n~~~~~~ 364 (436)
T PRK05335 329 KRPNLFFAGQITGV--EGYV-ESAASGLLAGINAARLAL 364 (436)
T ss_pred CCCCEEeeeeecCc--hHHH-HHHHHHHHHHHHHHHHhc
Confidence 35799999999965 2444 677889999987766543
No 245
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=56.14 E-value=44 Score=29.68 Aligned_cols=42 Identities=26% Similarity=0.198 Sum_probs=30.6
Q ss_pred cCCeecCceeEEEEecCC--eeE-EEEc-----------CCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYI--GVK-VTVE-----------GGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~--~v~-V~~~-----------~g~~~~ad~VI~t~p~~ 153 (365)
+++|+.++.|..|..+++ +|. |.+. +..++.|+.||.|+...
T Consensus 114 GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 114 GAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred CCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 568999999999987766 232 3332 22478999999999843
No 246
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=56.13 E-value=30 Score=35.40 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=31.3
Q ss_pred ccCCeecCceeEEEEecCCe--eEEEEcC-------C--------cEEEcCEEEEecChh
Q 017808 111 KGLDIRLGHRVTKITRHYIG--VKVTVEG-------G--------KTFVADAVVVAVPLG 153 (365)
Q Consensus 111 ~~l~I~l~~~V~~I~~~~~~--v~V~~~~-------g--------~~~~ad~VI~t~p~~ 153 (365)
.+++|++++.|.+|...+++ +.|++.+ + +++.+|.||+++-..
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 46789999999999876543 6665321 1 269999999998643
No 247
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=55.63 E-value=15 Score=37.25 Aligned_cols=39 Identities=31% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCCCCEEEeccccCCCCcc-------hhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++||-|||....+..| ++-.|+..|++|++.+.+..
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 5799999999986422122 67788999999999887653
No 248
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=55.32 E-value=2.5e+02 Score=28.72 Aligned_cols=43 Identities=21% Similarity=0.078 Sum_probs=31.3
Q ss_pred cCCeecCceeEEEEecC--CeeE-EEE---cCCc--EEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHY--IGVK-VTV---EGGK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~--~~v~-V~~---~~g~--~~~ad~VI~t~p~~~ 154 (365)
+++|+.+++|++|..++ +++. |+. .+|+ ++.||.||+|+.+..
T Consensus 246 Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 246 GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 56799999999998763 4432 333 2344 579999999999864
No 249
>PRK08401 L-aspartate oxidase; Provisional
Probab=55.29 E-value=31 Score=33.69 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=33.3
Q ss_pred HHHHHHhc-----cCCeecCceeEEEEecCCeeE-EEEcCCcEEEcCEEEEecChhh
Q 017808 104 PVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 104 ~L~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
.+.+.|.+ ++++..+ .|+.+..++++|. |.+ +|+.+.|+.||+|+-...
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 45555543 4567665 7888876666654 544 566899999999997643
No 250
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=55.22 E-value=33 Score=33.92 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.4
Q ss_pred cCCeecCceeEEEEecCCeeE-EE-EcCCc--EEEcC-EEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VT-VEGGK--TFVAD-AVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~-~~~g~--~~~ad-~VI~t~p~ 152 (365)
+++|+++++|++|..+++.|. |. ..+|+ .+.|+ .||+|+--
T Consensus 188 gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 188 NARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGG 233 (513)
T ss_pred CCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCC
Confidence 578999999999887766553 32 23443 47886 79998865
No 251
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.18 E-value=16 Score=36.77 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHHHHhc--cCCeecCceeEEEEecCCeeE-E---EEcCCc--EEEcCEEEEecChh
Q 017808 103 LPVINTLAK--GLDIRLGHRVTKITRHYIGVK-V---TVEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V---~~~~g~--~~~ad~VI~t~p~~ 153 (365)
..|.+.+.+ +++|+.++.|.++..+++.|. | ...+|+ .+.|+.||+|+--.
T Consensus 141 ~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 141 HTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 344554433 568999999999987666543 2 234564 57999999999764
No 252
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=55.05 E-value=23 Score=34.20 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=35.6
Q ss_pred cCCeecCceeEEEEecCCe-e-EEEEcCCcEEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYIG-V-KVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~-v-~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
++++++++.|.++.-+.+| | .|...||+++.||-||+-+-...
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 4579999999999977644 4 48899999999999999887543
No 253
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=54.79 E-value=32 Score=34.44 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=29.8
Q ss_pred hCCCCCEEEeccccCC----CCc---chhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SYP---GSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~~---g~v~gA~~SG~~aA~~i~~~ 335 (365)
-+|+++||-||+.+.. .|. .++-.|+.+|+.|++.+.+.
T Consensus 504 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 504 GSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 4689999999987642 222 26778999999999987654
No 254
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=54.26 E-value=37 Score=30.16 Aligned_cols=42 Identities=29% Similarity=0.176 Sum_probs=29.9
Q ss_pred cCCeecCceeEEEEecCC-eeE-EEEc-----------CCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYI-GVK-VTVE-----------GGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~-~v~-V~~~-----------~g~~~~ad~VI~t~p~~ 153 (365)
+++|++++.|..|..+++ .+. |.+. +..++.|+.||.|+-..
T Consensus 118 Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 118 GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred CCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 568999999999987655 332 2221 22478999999998643
No 255
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.06 E-value=19 Score=36.29 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=29.4
Q ss_pred CCCCCEEEeccccCCC-Cc------chhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~-~~------g~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++||-|||.+..+ ++ .++-+|+..|++|++.+.+.+
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999976421 11 256778999999999887654
No 256
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=53.30 E-value=33 Score=32.47 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=31.1
Q ss_pred cCCeecCceeEEEEe-cCCeeEEEEc-CCc--EEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITR-HYIGVKVTVE-GGK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~-~~~~v~V~~~-~g~--~~~ad~VI~t~p~~~ 154 (365)
++.+++++.++.+.. +++++.|+.. +|+ +++||.||-|--..-
T Consensus 117 g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 117 GLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred CCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence 457899999888765 5556667664 775 689998887776543
No 257
>PRK13984 putative oxidoreductase; Provisional
Probab=52.70 E-value=20 Score=36.29 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=31.0
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
++++++++|.+||.+.. . .+-.|+..|+.||..|.+.|.
T Consensus 564 ~~Ts~~gVfAaGD~~~~--~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHG--P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CccCCCCEEEecCcCCc--h-HHHHHHHHHHHHHHHHHHHhc
Confidence 34567899999999875 2 345689999999999988764
No 258
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=52.47 E-value=19 Score=34.66 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=28.5
Q ss_pred hCCCCCEEEeccccCC-----CC--cchhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM-----SY--PGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~-----~~--~g~v~gA~~SG~~aA~~i~~~ 335 (365)
-+|+++||-||+.+.. .| +.++-.|+..|+.|++.+.+.
T Consensus 384 g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 4689999999986531 12 225677899999999987654
No 259
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=52.35 E-value=21 Score=35.85 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCCCCEEEeccccCC-CCc------chhHHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
+++++||-|||.... .++ .++-+|+.+|++|++.+.+.+.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 789999999997642 121 2677889999999999876653
No 260
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=52.10 E-value=21 Score=35.45 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=30.2
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEcCC-c---EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVEGG-K---TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~~g-~---~~~ad~VI~t~p~ 152 (365)
.++|+.++.|++|..++++++ |++.++ . ...++.||++.-.
T Consensus 208 nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 208 NLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred CeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 478999999999998766543 554332 2 3578999999865
No 261
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=51.37 E-value=21 Score=34.64 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=30.0
Q ss_pred CCCEEEeccccC---CCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 300 VDNLFFAGEATS---MSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 300 ~~~l~~aG~~~~---~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
-+|+.++||+.+ |--++++.-|+.||..||+.+.+.+
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 358999999855 3345699999999999999988654
No 262
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=51.20 E-value=23 Score=35.58 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHHHHHHhc-----cCCeecCceeEEEEec-CCeeE-EE---EcCCc--EEEcCEEEEecChh
Q 017808 103 LPVINTLAK-----GLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L~~-----~l~I~l~~~V~~I~~~-~~~v~-V~---~~~g~--~~~ad~VI~t~p~~ 153 (365)
..|.+.|.+ +++|..+++++++..+ +++|. |. ..+|+ .+.|++||+|+--.
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 188 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGA 188 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCc
Confidence 345555543 5689999999999875 44443 33 24564 47899999999753
No 263
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=51.15 E-value=39 Score=34.02 Aligned_cols=40 Identities=28% Similarity=0.236 Sum_probs=29.9
Q ss_pred CCCCCEEEeccccCC-CCc------chhHHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
+|+++||-|||.+.. .++ .++-.|+.+|++|++.+.+.+.
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 579999999998652 121 2577789999999998876543
No 264
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=50.97 E-value=24 Score=33.34 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCEEEeccccCC---CCcchhHHHHHHHHHHHHHHHHHH
Q 017808 301 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 301 ~~l~~aG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
++++++||+-+. -.++++.-|+.||..+|+.|.+.+
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l 302 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYL 302 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 579999999664 334689999999999999988765
No 265
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=50.77 E-value=12 Score=35.83 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=24.6
Q ss_pred CCCCCEEEeccccCC-CCcc--hhHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSM-SYPG--SVHGAFSTGLMAA 329 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~-~~~g--~v~gA~~SG~~aA 329 (365)
.-+++||||||-+.. +..| .++-|+.||..|+
T Consensus 365 k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 365 KLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred cCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 346899999998764 2233 6888999999886
No 266
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=50.64 E-value=40 Score=33.96 Aligned_cols=41 Identities=24% Similarity=0.121 Sum_probs=30.9
Q ss_pred cCCeecCceeEEEEecCCeeE----EEEcCCc--EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK----VTVEGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~----V~~~~g~--~~~ad~VI~t~p~ 152 (365)
+++|..++.|+++..++++|. +...+|+ .+.|+.||+|+--
T Consensus 148 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 148 QIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred CcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 467899999999987766553 2335663 6899999999965
No 267
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=50.23 E-value=46 Score=33.72 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=29.5
Q ss_pred hCCCCCEEEeccccCCCCc------chhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~------g~v~gA~~SG~~aA~~i~~~l 336 (365)
.+++++||.|||.....++ .++-+|+..|++|++.+....
T Consensus 380 ~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 380 MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999997533221 367788999999999877654
No 268
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=50.12 E-value=39 Score=31.79 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=34.0
Q ss_pred cCCeecCceeEEEEecCCeeE---EEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK---VTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~---V~~~~g~~~~ad~VI~t~p~ 152 (365)
+++++++..|.+|....+.+. +...++..+.+|.|+++++.
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecc
Confidence 457899999999998876643 57778889999999999874
No 269
>PRK07804 L-aspartate oxidase; Provisional
Probab=50.05 E-value=38 Score=33.77 Aligned_cols=42 Identities=26% Similarity=0.145 Sum_probs=29.9
Q ss_pred cCCeecCceeEEEEecCC-e---eEEE-----EcCC-cEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYI-G---VKVT-----VEGG-KTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~-~---v~V~-----~~~g-~~~~ad~VI~t~p~~ 153 (365)
+++|+.++.|.+|..+++ . +.+. ..++ ..+.|+.||+|+--.
T Consensus 158 gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 158 PLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred CCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 468999999999987654 3 3333 1233 368999999999753
No 270
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=49.71 E-value=19 Score=36.14 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=29.8
Q ss_pred cCCeecCceeEEEEecCCeeE-EEE-cCCc--EEEcC-EEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTV-EGGK--TFVAD-AVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~-~~g~--~~~ad-~VI~t~p~~ 153 (365)
+++|+++++|++|..++++|. |.. .+|+ .+.|+ .||+|+---
T Consensus 222 gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~ 268 (557)
T PRK12844 222 GVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGF 268 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCc
Confidence 568999999999988766653 333 3453 46785 799988643
No 271
>PRK12839 hypothetical protein; Provisional
Probab=49.66 E-value=19 Score=36.23 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=29.4
Q ss_pred hCCCCCEEEeccccCC----CC---cchhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SY---PGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~---~g~v~gA~~SG~~aA~~i~~~ 335 (365)
-+|+++||-||+.+.. .| +.++-.|+.+|+.|++.+.+.
T Consensus 522 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 522 DTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 4689999999996532 22 226778999999999987653
No 272
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.65 E-value=25 Score=35.42 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=30.2
Q ss_pred hCCCCCEEEeccccCCC-C------cchhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMS-Y------PGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~-~------~g~v~gA~~SG~~aA~~i~~~l 336 (365)
.+++++||-|||.+..+ + ..++-.|+..|++|++.+.+..
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 35799999999986521 2 1257788999999999887654
No 273
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=49.62 E-value=19 Score=38.59 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=30.6
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
.+..+++|.+||.... ++++..|+..|+.||..|+..
T Consensus 802 ~Ts~pgVFAaGD~a~G--P~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 802 ETNITNVFVIGDANRG--PATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred ccCCCCEEEEeCcCCC--ccHHHHHHHHHHHHHHHHhcc
Confidence 3456799999998754 468999999999999999754
No 274
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=49.40 E-value=24 Score=35.54 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=30.4
Q ss_pred hCCCCCEEEeccccCCC-Cc------chhHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~-~~------g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
++++++||-|||....+ ++ .++-.|+..|++|++.+.+.+.
T Consensus 368 ~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 368 ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred ccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 47899999999975421 11 2677789999999998876653
No 275
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=49.34 E-value=21 Score=38.28 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=32.0
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
++..+++|.+||.... ++++..|+..|+.||..|+....
T Consensus 804 qTs~pgVFAaGD~a~G--p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 804 ETSLTNVYMIGDVQRG--PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred ccCCCCEEEEeccccC--chHHHHHHHHHHHHHHHHhhhcC
Confidence 4556899999998754 46889999999999999987543
No 276
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=49.26 E-value=43 Score=33.61 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=29.9
Q ss_pred CCCCCEEEeccccCCCCcc-------hhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++||-|||.+..+..| ++-+|+.+|++|++.+.+..
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~ 396 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYA 396 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999986422222 67788999999999887654
No 277
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=49.21 E-value=19 Score=36.12 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=29.3
Q ss_pred cCCeecCceeEEEEecCCeeE-EEE-cCCc--EEEcC-EEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTV-EGGK--TFVAD-AVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~-~~g~--~~~ad-~VI~t~p~ 152 (365)
+++|+++++|++|..++++|. |.. .+|+ .+.|+ .||+|+.-
T Consensus 222 gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 222 GVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 578999999999988766654 433 2443 47786 69997764
No 278
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=49.19 E-value=49 Score=33.39 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=30.1
Q ss_pred hCCCCCEEEeccccCC----CCc--c-hhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~~~l 336 (365)
-+|+++||-||+.... .|. | ++-.|+.+|+.|++.+.+..
T Consensus 524 g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 524 DSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred CCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 4689999999988542 222 2 46778999999999887654
No 279
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=49.19 E-value=27 Score=33.67 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=34.5
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
++++++++.|+++...... |.+.+|+++.+++.|+|+-..
T Consensus 141 gIe~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATGSS 180 (478)
T ss_pred CceEEEcceeEEeeccccE--EEeCCCceeecceEEEeecCc
Confidence 4679999999999987665 778899999999999999773
No 280
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.13 E-value=25 Score=35.52 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=30.4
Q ss_pred hCCCCCEEEeccccCCCCc------chhHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~------g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
.+++++||-|||.+...++ .++-.|+..|++|++.+.+.+.
T Consensus 365 ~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 365 MTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred CeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 5779999999997633211 2567788999999998876653
No 281
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.05 E-value=24 Score=35.17 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=31.1
Q ss_pred cCCeecCceeEEEEecCCe-eE-EE--E-cCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIG-VK-VT--V-EGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~-v~-V~--~-~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|+++++|+++..++++ |. |. . .+|+ .+.|+.||+|+--.
T Consensus 148 gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 148 RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 5789999999999876554 43 32 2 4564 58899999999753
No 282
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=49.03 E-value=19 Score=35.63 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=29.7
Q ss_pred hCCCCCEEEeccccCCCC------cchhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSY------PGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~------~g~v~gA~~SG~~aA~~i~~~l 336 (365)
-+|+++||-||+.+...+ +.++-.|+.+|+.|++.+.+..
T Consensus 458 g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 458 GSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred CCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 368999999999754321 1256678999999999887653
No 283
>PRK12839 hypothetical protein; Provisional
Probab=48.77 E-value=52 Score=33.12 Aligned_cols=41 Identities=29% Similarity=0.360 Sum_probs=28.1
Q ss_pred cCCeecCceeEEEEec-CCee---EEEEcCCc-EE-EcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRH-YIGV---KVTVEGGK-TF-VADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~-~~~v---~V~~~~g~-~~-~ad~VI~t~p~ 152 (365)
+++|+++++|++|..+ +++| .+...+|+ .+ .++.||+|+--
T Consensus 228 Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGG 274 (572)
T PRK12839 228 GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGG 274 (572)
T ss_pred CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCC
Confidence 5789999999999765 3443 33444554 23 45899999854
No 284
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=48.54 E-value=18 Score=36.48 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=29.5
Q ss_pred hCCCCCEEEeccccCC----CC--cc-hhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SY--PG-SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~--~g-~v~gA~~SG~~aA~~i~~~l 336 (365)
-+|+++||-||+.+.. .| .| ++-.|+.+|+.|++.+.+.+
T Consensus 525 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 525 GQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 4689999999985422 12 12 66778999999999887543
No 285
>PRK06175 L-aspartate oxidase; Provisional
Probab=48.50 E-value=27 Score=33.68 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=28.7
Q ss_pred CCCCCEEEeccccC-CCC------cchhHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATS-MSY------PGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 298 ~p~~~l~~aG~~~~-~~~------~g~v~gA~~SG~~aA~~i~~~ 335 (365)
+|+++||-|||.+. ..+ ..++-.++..|++|++.+...
T Consensus 342 t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 342 TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999864 211 125677899999999987643
No 286
>PRK08275 putative oxidoreductase; Provisional
Probab=48.49 E-value=50 Score=33.05 Aligned_cols=40 Identities=30% Similarity=0.441 Sum_probs=31.0
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
..+++++||-|||....+ ..++-+|+..|++|++.+.+.+
T Consensus 365 ~~t~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 365 AETTVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CccCCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999976543 2367778999999999877654
No 287
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.22 E-value=41 Score=33.59 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=30.1
Q ss_pred hCCCCCEEEeccccCCCC------cchhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSY------PGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~------~g~v~gA~~SG~~aA~~i~~~l 336 (365)
++|+++||-|||.+...+ +.++-.|+.+|++|++.+.+.+
T Consensus 358 ~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 358 ETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred cccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 378999999999754321 1256678999999999987654
No 288
>PRK07121 hypothetical protein; Validated
Probab=48.20 E-value=21 Score=35.04 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=28.6
Q ss_pred hCCCCCEEEeccccCCC----C--cchhHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMS----Y--PGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~----~--~g~v~gA~~SG~~aA~~i~~ 334 (365)
-+|+++||-||+.+..- | +.++-.|+.+|+.|++.+.+
T Consensus 446 g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 446 GAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred CCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 46899999999975421 1 23567799999999998764
No 289
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=48.00 E-value=25 Score=35.50 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=28.7
Q ss_pred cCCeecCceeEEEEecC-CeeE-EEE-cCCc--EEEcC-EEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHY-IGVK-VTV-EGGK--TFVAD-AVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~-~~v~-V~~-~~g~--~~~ad-~VI~t~p~ 152 (365)
+++|+++++|++|..++ ++|. |.. .+|+ .+.|+ .||+|+--
T Consensus 227 gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 227 GVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGG 273 (584)
T ss_pred CceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCc
Confidence 57899999999999864 4443 332 3443 46787 69998864
No 290
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.93 E-value=52 Score=33.21 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=30.3
Q ss_pred cCCeecCceeEEEEecC----CeeE-EE---EcCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHY----IGVK-VT---VEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~----~~v~-V~---~~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|..++.|++|..++ ++|. |. ..+|+ .+.|+.||+|+--.
T Consensus 154 gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 154 GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 56899999999998654 4432 33 24554 57899999999754
No 291
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=47.84 E-value=20 Score=35.98 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=28.9
Q ss_pred hCCCCCEEEeccccCC----CCcc---hhHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SYPG---SVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~~g---~v~gA~~SG~~aA~~i~~ 334 (365)
-+|+++||-||+.+.. .|.+ ++-.|+.+|+.|++.+.+
T Consensus 519 g~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 519 GSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 4689999999987642 2332 677799999999998753
No 292
>PRK10262 thioredoxin reductase; Provisional
Probab=47.74 E-value=14 Score=33.89 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=32.7
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
+.+.++++|.|||-+...+ ..+-.|+-.|..||..|.+.+.+
T Consensus 275 ~~t~~~~VyA~GD~~~~~~-~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIY-RQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred cccCCCCEEECeeccCCCc-ceEEEEehhHHHHHHHHHHHHHh
Confidence 4566789999999986532 35556899999999999888754
No 293
>PRK09077 L-aspartate oxidase; Provisional
Probab=47.52 E-value=26 Score=34.85 Aligned_cols=40 Identities=30% Similarity=0.342 Sum_probs=29.9
Q ss_pred hCCCCCEEEeccccCC-CC------cchhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM-SY------PGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~-~~------~g~v~gA~~SG~~aA~~i~~~l 336 (365)
++++++||-|||.... .+ ..++-.|+..|++|++.+.+..
T Consensus 363 ~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 363 RTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred ccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 3689999999998642 22 1367778899999999887653
No 294
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=47.28 E-value=41 Score=33.55 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=30.5
Q ss_pred cCCeecCceeEEEEecCC---eeE---EEEc-CCc--EEEcCEEEEecChhh
Q 017808 112 GLDIRLGHRVTKITRHYI---GVK---VTVE-GGK--TFVADAVVVAVPLGV 154 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~---~v~---V~~~-~g~--~~~ad~VI~t~p~~~ 154 (365)
.++|++++.|.+|..+++ +|+ +.+. +|+ ++.|+.||+|+..=.
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIe 279 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVH 279 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchh
Confidence 368999999999998643 333 3333 353 479999999987433
No 295
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.10 E-value=46 Score=33.89 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=30.1
Q ss_pred CCeecCceeEEEEecCCeeE-EE---EcCCc--EEEcCEEEEecCh
Q 017808 113 LDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~~~v~-V~---~~~g~--~~~ad~VI~t~p~ 152 (365)
++|.++++|.++..+++.|. |. ..+|+ .+.|++||+|+--
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 78999999999987666543 22 23554 5799999999985
No 296
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.02 E-value=16 Score=37.25 Aligned_cols=39 Identities=26% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCCCEEEeccccCCCCc------chhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~~~------g~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++||-|||.+...++ .++-+|+..|++|++.+....
T Consensus 403 t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 403 ATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred eecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 579999999997543211 267788999999999887654
No 297
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=46.90 E-value=45 Score=32.59 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=30.9
Q ss_pred hccCCeecCceeEEEEecCCeeE-EEE-----cCC---------cEEEcCEEEEecCh
Q 017808 110 AKGLDIRLGHRVTKITRHYIGVK-VTV-----EGG---------KTFVADAVVVAVPL 152 (365)
Q Consensus 110 ~~~l~I~l~~~V~~I~~~~~~v~-V~~-----~~g---------~~~~ad~VI~t~p~ 152 (365)
.+++++++++.+++|..++++|. |+. .+| .++.||.||+++..
T Consensus 341 ~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 45789999999999976555543 332 122 46899999999873
No 298
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=46.73 E-value=55 Score=33.20 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=33.2
Q ss_pred HHhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 295 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 295 ~l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
...+.+++||-|||....+..+...+++..|+.+++.+...+..
T Consensus 390 ~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 390 NRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34677899999999875433456778888999999888766543
No 299
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.66 E-value=29 Score=32.89 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=32.1
Q ss_pred CeecCceeEEEEecCCe-eEEEEcC-----CcEEEcCEEEEecChh
Q 017808 114 DIRLGHRVTKITRHYIG-VKVTVEG-----GKTFVADAVVVAVPLG 153 (365)
Q Consensus 114 ~I~l~~~V~~I~~~~~~-v~V~~~~-----g~~~~ad~VI~t~p~~ 153 (365)
.++.++.|+.++..++| +.+.+.. .++++.|+||+||--.
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 58899999999999877 7666432 2578999999999865
No 300
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.04 E-value=58 Score=32.98 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=30.8
Q ss_pred cCCeecCceeEEEEecC-CeeE-EE---EcCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHY-IGVK-VT---VEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~-~~v~-V~---~~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|.++++|+++..++ ++|. |. ..+|+ .+.|+.||+|+--.
T Consensus 163 gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 163 NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 57899999999988765 4443 33 34664 67899999999753
No 301
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=46.03 E-value=24 Score=35.54 Aligned_cols=42 Identities=29% Similarity=0.193 Sum_probs=29.6
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEc-CCc--EEEc-CEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVE-GGK--TFVA-DAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~-~g~--~~~a-d~VI~t~p~~ 153 (365)
+++|+++++|+++..++++|. |... +|+ .+.| +.||+|+-..
T Consensus 235 Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~ 281 (578)
T PRK12843 235 GVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGF 281 (578)
T ss_pred CCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCc
Confidence 568999999999887666554 4433 443 4676 6899988653
No 302
>PRK07512 L-aspartate oxidase; Provisional
Probab=45.73 E-value=31 Score=34.13 Aligned_cols=39 Identities=31% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCCEEEeccccCCCCcc-------hhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++||-|||....+..| ++-.|+..|++|++.+.+..
T Consensus 352 t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 352 SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred cccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999986321111 46667889999999887654
No 303
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=45.66 E-value=18 Score=36.86 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=35.0
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
++++++++.+++|...+....|..+||..+.||-||+++-.
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc
Confidence 56799999999998855556799999999999999999864
No 304
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=45.44 E-value=27 Score=33.97 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCCCEEEeccccCC-----CC--cchhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSM-----SY--PGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~-----~~--~g~v~gA~~SG~~aA~~i~~~l 336 (365)
+|+++||-||+.+.. .| ..++-.|+..|+.|++.+.+..
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~ 461 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHA 461 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 589999999987532 12 1356678999999999887654
No 305
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=45.35 E-value=24 Score=35.29 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=29.7
Q ss_pred cCCeecCceeEEEEecCCeeE-EEE---cC--------------C-cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTV---EG--------------G-KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~---~~--------------g-~~~~ad~VI~t~p~ 152 (365)
+++|+++++++++..++++|. |.. .+ + ..+.|+.||+|+--
T Consensus 166 gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 166 LVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred CceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 479999999999887666554 442 11 1 25789999999864
No 306
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=45.11 E-value=30 Score=33.25 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=31.7
Q ss_pred CCCCCEEEeccccCC---CCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
+..+++|.+||.... ..+....-|+..|..+|+.|...+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 346899999998864 2344677799999999999988875
No 307
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.77 E-value=29 Score=35.08 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=29.6
Q ss_pred CCCCCEEEeccccCCC-Cc------chhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~-~~------g~v~gA~~SG~~aA~~i~~~l 336 (365)
++++|||-|||.+..+ ++ .++-.|+..|++|++.+.+..
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999986421 21 267789999999999887653
No 308
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=44.58 E-value=31 Score=33.83 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=29.1
Q ss_pred hCCCCCEEEeccccCC-CC------cchhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM-SY------PGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~-~~------~g~v~gA~~SG~~aA~~i~~~ 335 (365)
+++++|||-|||.... .+ ..++-.|+..|++|++.+.+.
T Consensus 343 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 343 RTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 4689999999998532 11 125677899999999988654
No 309
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=44.44 E-value=60 Score=33.30 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=31.3
Q ss_pred cCCeecCceeEEEEecCCe---eEEEE-cCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIG---VKVTV-EGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~---v~V~~-~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|+.+++|.+|..++++ +.+.+ .+|+ .+.|+.||+|+--.
T Consensus 172 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~ 219 (657)
T PRK08626 172 GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGY 219 (657)
T ss_pred CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence 5789999999999877665 33443 4664 46899999999743
No 310
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=43.36 E-value=72 Score=32.31 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCeecCceeEEEEec-CCee-EEEEcCCcEEEcCEEEEecChhh
Q 017808 113 LDIRLGHRVTKITRH-YIGV-KVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 113 l~I~l~~~V~~I~~~-~~~v-~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+.++ ...|+.+..+ ++.+ .|.+.+|..+.||.||+|+-...
T Consensus 112 V~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 112 LSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred cEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 4454 4567777654 4444 58888998999999999998764
No 311
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=43.16 E-value=31 Score=34.73 Aligned_cols=41 Identities=27% Similarity=0.097 Sum_probs=30.6
Q ss_pred cCCeecCceeEEEEecCCeeE-E---EEcCC--cEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-V---TVEGG--KTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V---~~~~g--~~~~ad~VI~t~p~ 152 (365)
++++..++.|..+..++++|. | ...+| ..+.|+.||+|+--
T Consensus 147 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 147 QIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred CCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 467889999999987766654 2 23466 35789999999965
No 312
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=42.99 E-value=67 Score=32.94 Aligned_cols=49 Identities=29% Similarity=0.385 Sum_probs=34.0
Q ss_pred HHHHHHhccCCeecCceeEEEEecCCeeEEEE---c---------------CCc--EEEcCEEEEecCh
Q 017808 104 PVINTLAKGLDIRLGHRVTKITRHYIGVKVTV---E---------------GGK--TFVADAVVVAVPL 152 (365)
Q Consensus 104 ~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~---~---------------~g~--~~~ad~VI~t~p~ 152 (365)
.+.+++.++++|++++.+.+|..+++++.++. . +|+ ++.+|.||+++..
T Consensus 367 ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 367 EIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred HHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 45556667889999999999887666543321 1 232 5899999999874
No 313
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.94 E-value=47 Score=30.99 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=39.4
Q ss_pred cCChHHHHHHHh------ccCCeecCceeEEEEecCCe-eEEEEcCCcEEEcCEEEEecCh
Q 017808 99 VRGYLPVINTLA------KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 152 (365)
Q Consensus 99 ~gG~~~L~~~L~------~~l~I~l~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~t~p~ 152 (365)
..|++.++..+. +++++|.++.|+++...+++ ..+.+..|....+|.++.|+--
T Consensus 225 LR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR 285 (478)
T KOG0405|consen 225 LRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR 285 (478)
T ss_pred hcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecC
Confidence 356665554442 25689999999999988777 4566667766679999999863
No 314
>PRK06116 glutathione reductase; Validated
Probab=42.90 E-value=31 Score=33.40 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=29.5
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. ....+-|+..|+.+|+.|+.
T Consensus 291 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGR--VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCCC--cCcHHHHHHHHHHHHHHHhC
Confidence 34557899999998754 34788999999999998863
No 315
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=42.75 E-value=35 Score=34.46 Aligned_cols=41 Identities=29% Similarity=0.524 Sum_probs=28.6
Q ss_pred HHHhCC-CCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 294 ERLRIP-VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 294 ~~l~~p-~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
..+... ++||||||+-... -| .+.|..+|..|+-.+...+.
T Consensus 350 ~~le~k~~~gLf~AGqi~Gt--~G-y~eAaa~Gl~Ag~naa~~~~ 391 (617)
T TIGR00136 350 PTLETKLIQGLFFAGQINGT--TG-YEEAAAQGLMAGINAALKLQ 391 (617)
T ss_pred hhheeCCCCCeEEccccCCc--ch-HHHHHHHHHHHHHHHHHHhc
Confidence 344433 7899999996654 33 56788899999877665543
No 316
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=42.58 E-value=55 Score=31.85 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=35.9
Q ss_pred CChHHHHHHHhc--cCCeecCceeEEEEecCCe-e-EEEEcCCcEEEcCEEEEecChhh
Q 017808 100 RGYLPVINTLAK--GLDIRLGHRVTKITRHYIG-V-KVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 100 gG~~~L~~~L~~--~l~I~l~~~V~~I~~~~~~-v-~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
.-++.+....+. +++++.++ |+.|..++++ + .|++.+|++++||.||=|+-..-
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 345665555443 67877774 7777776665 3 58999999999999999987643
No 317
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=42.51 E-value=57 Score=30.77 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=30.8
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcC------C--cEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEG------G--KTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~------g--~~~~ad~VI~t~p~~ 153 (365)
+++++.+ .|++|..+++++.|++.+ | .+++||.||.|.-..
T Consensus 106 G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~ 154 (388)
T TIGR02023 106 GAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGAN 154 (388)
T ss_pred CCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCC
Confidence 5678654 699999888888777653 2 368999999988753
No 318
>PRK13984 putative oxidoreductase; Provisional
Probab=42.21 E-value=57 Score=33.02 Aligned_cols=50 Identities=24% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHHHHhccCCeecCceeEEEEecCCeeE-EEEc-------------------CCcEEEcCEEEEecCh
Q 017808 103 LPVINTLAKGLDIRLGHRVTKITRHYIGVK-VTVE-------------------GGKTFVADAVVVAVPL 152 (365)
Q Consensus 103 ~~L~~~L~~~l~I~l~~~V~~I~~~~~~v~-V~~~-------------------~g~~~~ad~VI~t~p~ 152 (365)
..+.+.+.++++|++++.+.+|..+++++. |++. ++.++.+|.||+++..
T Consensus 467 ~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~ 536 (604)
T PRK13984 467 EEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQ 536 (604)
T ss_pred HHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCC
Confidence 344455566888999988888865555443 2221 1236899999999764
No 319
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=42.15 E-value=33 Score=33.26 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=29.4
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~ 333 (365)
+++..+++|.+||.+.. ....+-|+..|+.+|+.|+
T Consensus 291 ~~T~~p~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGK--VELTPVAIAAGRKLSERLF 326 (450)
T ss_pred CcCCCCCEEEEEecCCC--cccHHHHHHHHHHHHHHHh
Confidence 34457899999998865 3578899999999999876
No 320
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=42.09 E-value=21 Score=35.27 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=28.5
Q ss_pred hCCCCCEEEeccccCC----CCc--c-hhHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~~ 334 (365)
-+|+++||-||+.+.. .|+ | ++-.|+..|+.|++.+..
T Consensus 466 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 466 GRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 3689999999997532 232 2 378899999999997753
No 321
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=42.06 E-value=65 Score=30.74 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=47.2
Q ss_pred CccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhC----CCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH-
Q 017808 262 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI----PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV- 336 (365)
Q Consensus 262 ~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~----p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l- 336 (365)
.|+-++.++=--|. .|+|..+.|.....+...++. |..+++|+||+..|. .|-+--...+...|++++...
T Consensus 42 ~pvLiEAT~NQVnq--~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn--~Wq~lpa~eAM~~A~~li~ayV 117 (426)
T PRK15458 42 SPLLIEATSNQVDQ--FGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPN--RWQNLPAAQAMANADDLIKSYV 117 (426)
T ss_pred CcEEEEeccccccc--cCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHH
Confidence 45555554332223 388987777655555444443 345799999999983 244555566666676665554
Q ss_pred HHHhCCCCC
Q 017808 337 LERYGELDL 345 (365)
Q Consensus 337 ~~~~~~~~~ 345 (365)
..-|.+++.
T Consensus 118 ~AGF~kIHL 126 (426)
T PRK15458 118 AAGFKKIHL 126 (426)
T ss_pred HcCCceEEe
Confidence 334555554
No 322
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=41.92 E-value=33 Score=35.10 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=33.4
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+++++++.+|.+|...... |++++|.++.+|.+|+|+-..
T Consensus 73 ~i~L~~~~~v~~idr~~k~--V~t~~g~~~~YDkLilATGS~ 112 (793)
T COG1251 73 GITLYTGEKVIQIDRANKV--VTTDAGRTVSYDKLIIATGSY 112 (793)
T ss_pred CcEEEcCCeeEEeccCcce--EEccCCcEeecceeEEecCcc
Confidence 5679999999999876554 788899999999999988643
No 323
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=41.86 E-value=68 Score=35.41 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=31.1
Q ss_pred CCCCCEEEeccccCCC----C--cchhHHHHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMS----Y--PGSVHGAFSTGLMAAEDCRMRVLER 339 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~----~--~g~v~gA~~SG~~aA~~i~~~l~~~ 339 (365)
+|+++||-||+.+... | +.++-.|+..|+.|++.+.+.+.++
T Consensus 858 ~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~ 905 (1167)
T PTZ00306 858 RPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKK 905 (1167)
T ss_pred ceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999975421 1 2245568999999999988876543
No 324
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=41.60 E-value=50 Score=31.54 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=33.0
Q ss_pred CCCEEEeccccCCC----CcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 300 VDNLFFAGEATSMS----YPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 300 ~~~l~~aG~~~~~~----~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
.+++|.+||-.... .+++.+.|++.|..+|+.|.+.+..
T Consensus 291 ~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 291 HPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 57899999987653 3689999999999999999988754
No 325
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=41.54 E-value=45 Score=33.90 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=56.8
Q ss_pred hhhcCCCCcccChhccc------cccccCCCceeccCC---hHHHHHHHhc-----cCCeecCceeEEEEecCCe-eEEE
Q 017808 70 EGWFAADAETISLKSWD------KEELLPGGHGLMVRG---YLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVT 134 (365)
Q Consensus 70 ~~~~g~~~~~~S~~~~~------~~~~~~g~~~~~~gG---~~~L~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~ 134 (365)
..++|...+-+|-.-.. +-....|+.+.+.+| -..+..+|+. +..|.-|++|++|....++ +.|.
T Consensus 145 g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVe 224 (856)
T KOG2844|consen 145 GKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVE 224 (856)
T ss_pred hhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCcccee
Confidence 34566666666654322 112234555556555 3556666654 4569999999999976665 4599
Q ss_pred EcCCcEEEcCEEEEecChhh
Q 017808 135 VEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 135 ~~~g~~~~ad~VI~t~p~~~ 154 (365)
|..| .+++.+||-++-...
T Consensus 225 T~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 225 TPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred ccCc-ceecceEEechhHHH
Confidence 9999 689999999987755
No 326
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=41.44 E-value=8.8 Score=37.01 Aligned_cols=56 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred hHHHHHHHhc--cCCeecCceeEEEEecCCeeE-EEEc--CC-cEEEcCEEEEecChhhhhc
Q 017808 102 YLPVINTLAK--GLDIRLGHRVTKITRHYIGVK-VTVE--GG-KTFVADAVVVAVPLGVLKA 157 (365)
Q Consensus 102 ~~~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V~~~--~g-~~~~ad~VI~t~p~~~l~~ 157 (365)
+..+.+.|.+ +++|++++.|..+..++++|. |++. +| .++.|+.||=|+--+.|..
T Consensus 92 ~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~ 153 (428)
T PF12831_consen 92 FKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAA 153 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444444443 689999999999999886643 4443 34 5789999999998666553
No 327
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=41.26 E-value=53 Score=31.88 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=29.9
Q ss_pred ccCCeecCceeEEEEecCCe---eEEEE-----------------cCCcEEEcCEEEEecCh
Q 017808 111 KGLDIRLGHRVTKITRHYIG---VKVTV-----------------EGGKTFVADAVVVAVPL 152 (365)
Q Consensus 111 ~~l~I~l~~~V~~I~~~~~~---v~V~~-----------------~~g~~~~ad~VI~t~p~ 152 (365)
++++|++++.|.+|..++++ |.+.. .+++++.||.||+++..
T Consensus 324 ~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 324 EGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred CCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 36789999999999866544 44321 12347899999999864
No 328
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=41.11 E-value=70 Score=30.46 Aligned_cols=80 Identities=8% Similarity=0.109 Sum_probs=45.5
Q ss_pred CccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhC----CCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH-
Q 017808 262 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI----PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV- 336 (365)
Q Consensus 262 ~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~----p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l- 336 (365)
.|+-++.++=--|. .|+|..+.|.....+...++. |..+++|+||+..|. -|-+.-...+...|++++...
T Consensus 39 ~pvLiEAT~NQVdq--~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn--~Wq~~pa~eAM~~A~~li~ayV 114 (421)
T PRK15052 39 RKVLIEATSNQVNQ--FGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLGPN--CWQQEPADAAMEKSVELVKAYV 114 (421)
T ss_pred CcEEEEeccccccc--cCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHH
Confidence 45555554332233 388987777655555444443 334799999999982 233334455555666655443
Q ss_pred HHHhCCCCC
Q 017808 337 LERYGELDL 345 (365)
Q Consensus 337 ~~~~~~~~~ 345 (365)
..-|.+++.
T Consensus 115 ~AGF~kIHL 123 (421)
T PRK15052 115 RAGFSKIHL 123 (421)
T ss_pred HcCCceEEe
Confidence 344665554
No 329
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=40.80 E-value=74 Score=32.09 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=29.9
Q ss_pred hCCCCCEEEeccccCCC-Cc------chhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~-~~------g~v~gA~~SG~~aA~~i~~~l 336 (365)
++++++||-|||..+.+ ++ .++-+|+..|++|++.+....
T Consensus 367 ~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 367 ETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred ccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 36899999999975422 21 267778999999999887654
No 330
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=40.68 E-value=24 Score=34.92 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=33.6
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 339 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~ 339 (365)
+++.++++|.|||.+...+ ..+.-|+.+|..||..+.+.|..+
T Consensus 472 l~Ts~p~IyAaGDv~~~~~-k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 472 GATSVPGVFAAGDCTTVPY-KQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred CCCCCCCEEECccccCCCC-CEEEEhhhhHHHHHHHHHHHHhhc
Confidence 3455789999999987532 357788999999999988877643
No 331
>PRK08071 L-aspartate oxidase; Provisional
Probab=40.55 E-value=39 Score=33.46 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=28.2
Q ss_pred hCCCCCEEEeccccCC-CC----c--chhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSM-SY----P--GSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~-~~----~--g~v~gA~~SG~~aA~~i~~~ 335 (365)
++++++||-|||.... .+ . .++-.|+..|++|++.+...
T Consensus 342 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 342 ETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 3789999999998642 11 1 25677888999999887543
No 332
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=39.77 E-value=36 Score=32.94 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=30.2
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. ....+-|+..|+.+|+.|+.
T Consensus 289 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDR--INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHhc
Confidence 45567899999999865 35788999999999998863
No 333
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=39.27 E-value=79 Score=30.10 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=45.6
Q ss_pred CccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhC----CCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH-
Q 017808 262 SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI----PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV- 336 (365)
Q Consensus 262 ~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~----p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l- 336 (365)
.|+-++.++=--|. .|+|..+.|.....+...++. |..+++++||+..|. -|-+--...+...|++++...
T Consensus 38 ~pvLiEAT~NQVnq--~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn--~Wq~lpa~eAM~~A~~li~ayV 113 (420)
T TIGR02810 38 TPVLIEATSNQVNQ--FGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPN--PWQHLPADEAMAKAAALVDAYV 113 (420)
T ss_pred CcEEEEeccccccc--cCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHH
Confidence 45555554332233 388987777655555444443 334799999999983 233433455555666655544
Q ss_pred HHHhCCCCC
Q 017808 337 LERYGELDL 345 (365)
Q Consensus 337 ~~~~~~~~~ 345 (365)
..-|.+++.
T Consensus 114 ~AGF~kIHL 122 (420)
T TIGR02810 114 EAGFTKIHL 122 (420)
T ss_pred HcCCceEEe
Confidence 344665554
No 334
>PRK14727 putative mercuric reductase; Provisional
Probab=37.89 E-value=36 Score=33.29 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=30.2
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|-+||.+.. +..++-|+..|+.||+.|+.
T Consensus 309 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 309 METSAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred eecCCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 45567899999998864 45788999999999998763
No 335
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=37.78 E-value=35 Score=32.44 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=25.2
Q ss_pred CCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 300 VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 300 ~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
++||||||+-+.. -|+.+ |..+|..|+..+...+.
T Consensus 355 ~~~lf~AGqi~G~--~Gy~e-aaa~G~~ag~na~~~~~ 389 (392)
T PF01134_consen 355 IPGLFFAGQINGT--EGYEE-AAAQGLIAGINAARRLQ 389 (392)
T ss_dssp SBTEEE-GGGGTB---SHHH-HHHHHHHHHHHHHHHHT
T ss_pred CCCceECCCCcch--hHHHH-HHHHHHHHHHHHHHHHc
Confidence 7899999999876 34555 55689999888776553
No 336
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=37.63 E-value=98 Score=31.51 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=29.8
Q ss_pred cCCeecCceeEEEEe-cCCeeE-EE---EcCCc--EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITR-HYIGVK-VT---VEGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~-~~~~v~-V~---~~~g~--~~~ad~VI~t~p~ 152 (365)
+++|..+++|+++.. ++++|. |. ..+|+ .+.|+.||+|+--
T Consensus 180 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 180 DCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred CCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 578999999999876 455443 33 24564 5789999999954
No 337
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=37.48 E-value=47 Score=31.74 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=37.7
Q ss_pred HHHHHHHhccCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 103 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+.|+++--.++-+..+..|.+|...++. |..+||.++.+|.+++++-..
T Consensus 262 eDLp~~~nGGvAvl~G~kvvkid~~d~~--V~LnDG~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 262 EDLPKAVNGGVAVLRGRKVVKIDEEDKK--VILNDGTTIGYDKCLIATGVR 310 (659)
T ss_pred hHCcccccCceEEEeccceEEeecccCe--EEecCCcEeehhheeeecCcC
Confidence 3344444446679999999999988776 555799999999999998754
No 338
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=37.27 E-value=53 Score=33.33 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=29.5
Q ss_pred cCCeecCceeEEEEecCC-eeE-EEE---cCCc--EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYI-GVK-VTV---EGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~-~v~-V~~---~~g~--~~~ad~VI~t~p~ 152 (365)
+++|+++++|+++..+++ +|. |.. .+|+ .+.|+.||+|+--
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 478999999999987543 433 332 2453 5789999999964
No 339
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=36.96 E-value=37 Score=32.75 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=32.7
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
+...+.+||-|||.... .+++..|-.+|..+|+.|+.+.
T Consensus 445 ~~t~i~gLy~aGdGAG~--argI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 445 LSTSIKGLYPAGDGAGL--ARGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred ceeeecceEEccccccc--cchhHHHhhhhHHHHHHHHHHh
Confidence 55668899999998754 5789999999999999988764
No 340
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=36.81 E-value=20 Score=35.33 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=28.1
Q ss_pred cCceeEEEEecCC-ee-EEEEcCCcEEEcCEEEEecChhh
Q 017808 117 LGHRVTKITRHYI-GV-KVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 117 l~~~V~~I~~~~~-~v-~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
+...|..+..+++ .| .|.|.+|..+.|++||+|+---.
T Consensus 119 ~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 119 LQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred hHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 3445666666555 34 48999999999999999997543
No 341
>PRK02106 choline dehydrogenase; Validated
Probab=36.66 E-value=57 Score=32.66 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=29.6
Q ss_pred cCCeecCceeEEEEecCCeeE-EEEc--CCc--EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYIGVK-VTVE--GGK--TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~-V~~~--~g~--~~~ad~VI~t~p~ 152 (365)
.++|++++.|++|..+++++. |++. ++. .+.++.||++.-.
T Consensus 215 nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGa 260 (560)
T PRK02106 215 NLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGA 260 (560)
T ss_pred CcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCC
Confidence 478999999999998866532 5443 332 3578999998863
No 342
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=36.50 E-value=94 Score=31.14 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=30.7
Q ss_pred cCCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~ 153 (365)
++++ ++++|..|...++.+.|.+.+| .+.+|+||+|+-..
T Consensus 74 gv~~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 74 GVKF-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred CCEE-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCc
Confidence 3455 4778999988776677888776 68999999998653
No 343
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=36.41 E-value=79 Score=29.41 Aligned_cols=49 Identities=20% Similarity=0.073 Sum_probs=31.5
Q ss_pred HHHHHHhc-cCCeecCceeEEEEecCCeeEEEE--------------------cCCcEEEcCEEEEecCh
Q 017808 104 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTV--------------------EGGKTFVADAVVVAVPL 152 (365)
Q Consensus 104 ~L~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~--------------------~~g~~~~ad~VI~t~p~ 152 (365)
.+.+.|.+ ++++++++.|.+|..++....|+. .+++++.+|.||+++..
T Consensus 215 ~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 215 YEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 34455543 678999999999875532222321 23357899999998864
No 344
>PRK07395 L-aspartate oxidase; Provisional
Probab=35.98 E-value=61 Score=32.46 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=29.5
Q ss_pred cCCeecCceeEEEEecC--CeeE-EE-EcCCc--EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHY--IGVK-VT-VEGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~--~~v~-V~-~~~g~--~~~ad~VI~t~p~ 152 (365)
+++|+++++|.++..++ +.|. |. ..+|+ .+.|+.||+|+--
T Consensus 149 gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 149 NIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred CcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 57899999999998753 3332 32 23554 3789999999976
No 345
>PRK11445 putative oxidoreductase; Provisional
Probab=35.94 E-value=51 Score=30.64 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCEEEeccccC---CCCcchhHHHHHHHHHHHHHHHHH
Q 017808 301 DNLFFAGEATS---MSYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 301 ~~l~~aG~~~~---~~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
+|+++.||+.+ |..++++..|+.+|..+|+.|.+.
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ 301 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc
Confidence 58999999965 444568999999999999998764
No 346
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=35.88 E-value=46 Score=32.70 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=30.2
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||-+.. +..++-|+..|..+|+.|+.
T Consensus 314 l~Ts~~~IyA~GDv~~~--~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTDR--VMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 34557899999999875 35788899999999998863
No 347
>PRK13748 putative mercuric reductase; Provisional
Probab=35.23 E-value=42 Score=33.56 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=29.8
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~ 333 (365)
+++.++++|.+||.+.. +..++-|+..|+.||..|+
T Consensus 391 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQ--PQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred cccCCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHc
Confidence 45567899999999865 4578889999999999876
No 348
>PRK08401 L-aspartate oxidase; Provisional
Probab=35.06 E-value=54 Score=31.97 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=27.2
Q ss_pred hCCCCCEEEeccccC-CCCc------chhHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATS-MSYP------GSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~-~~~~------g~v~gA~~SG~~aA~~i~~ 334 (365)
++++++||-|||.+. ..++ .++-.|+..|++|++.+.+
T Consensus 320 ~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 320 RTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 378999999999864 2111 1345578899999998764
No 349
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=34.44 E-value=62 Score=33.22 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=28.9
Q ss_pred CCCCEEEeccccCCCCc-------chhHHHHHHHHHHHHHHHHHHH
Q 017808 299 PVDNLFFAGEATSMSYP-------GSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 299 p~~~l~~aG~~~~~~~~-------g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
++++||-|||....+.. .++-+|+..|++|++.+.+.+.
T Consensus 385 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 385 GLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred ccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999998642111 1567788999999998876653
No 350
>PRK14694 putative mercuric reductase; Provisional
Probab=34.35 E-value=46 Score=32.45 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=30.1
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. +..++-|...|..||..|+.
T Consensus 298 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQ--PQFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cccCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHhcC
Confidence 44567899999999865 45788999999999998763
No 351
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=34.19 E-value=86 Score=33.96 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=29.7
Q ss_pred cCCeecCceeEEEEecCC--eeEEEE--cCCcEEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHYI--GVKVTV--EGGKTFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~~--~v~V~~--~~g~~~~ad~VI~t~p~ 152 (365)
+++|++++.|++|..++. +|.+.. .+++++.||.|+++...
T Consensus 365 GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 365 GIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred CCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 578999999999976543 244442 24567999999999753
No 352
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.19 E-value=48 Score=31.52 Aligned_cols=51 Identities=27% Similarity=0.345 Sum_probs=35.7
Q ss_pred ChHHHHHHHhccCC-eecCceeEEEEecC--CeeE--EEEcCCcEEEcCEEEEecC
Q 017808 101 GYLPVINTLAKGLD-IRLGHRVTKITRHY--IGVK--VTVEGGKTFVADAVVVAVP 151 (365)
Q Consensus 101 G~~~L~~~L~~~l~-I~l~~~V~~I~~~~--~~v~--V~~~~g~~~~ad~VI~t~p 151 (365)
=|..-.+--++.++ +++|++|+.|...+ ..++ |.+.++.+++|+.+|+.+-
T Consensus 99 Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G 154 (436)
T COG3486 99 EYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG 154 (436)
T ss_pred HHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC
Confidence 34444444455564 99999999884322 2233 7788888999999999875
No 353
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=33.86 E-value=69 Score=32.50 Aligned_cols=41 Identities=22% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCeecCceeEEEEecCCeeE-E---EEcCCc--EEEcCEEEEecChh
Q 017808 113 LDIRLGHRVTKITRHYIGVK-V---TVEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~~~v~-V---~~~~g~--~~~ad~VI~t~p~~ 153 (365)
++|+.+++|..|..++++|. | .+.+|+ .+.|+.||+|+-..
T Consensus 148 V~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 148 DNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 78999999999987666543 3 234553 68999999999853
No 354
>PRK08275 putative oxidoreductase; Provisional
Probab=33.26 E-value=59 Score=32.56 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=34.1
Q ss_pred HHHHHHHhc-cCCeecCceeEEEEec-CCeeE-EE---EcCCc--EEEcCEEEEecChh
Q 017808 103 LPVINTLAK-GLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 103 ~~L~~~L~~-~l~I~l~~~V~~I~~~-~~~v~-V~---~~~g~--~~~ad~VI~t~p~~ 153 (365)
..|.+.+.+ +++|++++.|++|..+ ++.+. |. ..+|+ .+.|+.||+|+--.
T Consensus 141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 141 KVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 334443332 5789999999999876 44432 32 34564 47899999999753
No 355
>PRK06370 mercuric reductase; Validated
Probab=33.10 E-value=54 Score=31.86 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.0
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. +...+.|...|+.+|+.|+.
T Consensus 297 l~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 297 LRTTNPGIYAAGDCNGR--GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 45567899999999865 34678899999999998864
No 356
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.94 E-value=51 Score=32.11 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=30.0
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. ....+-|...|+.||+.|+.
T Consensus 299 ~~Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 299 MRTNVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cccCCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 44567899999999864 45788999999999998863
No 357
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.88 E-value=1.1e+02 Score=30.74 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=29.2
Q ss_pred CCCCCEEEeccccCCC-Cc------chhHHHHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~-~~------g~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++||-|||....+ ++ .++-.|+..|++|++.+.+.+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4799999999976421 11 256778999999999887654
No 358
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=32.43 E-value=51 Score=31.96 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=29.1
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~ 333 (365)
+++..+++|.+||.+.. +...+.|+..|..+|+.|+
T Consensus 298 ~~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 298 YQTAVPHIYAVGDVIGF--PSLASASMDQGRIAAQHAV 333 (461)
T ss_pred cccCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHc
Confidence 34557899999998753 3468889999999999886
No 359
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=32.39 E-value=49 Score=36.49 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=29.9
Q ss_pred cCCeecCceeEEEEecC-----C----eeE-EE--Ec---CCc--EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHY-----I----GVK-VT--VE---GGK--TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~-----~----~v~-V~--~~---~g~--~~~ad~VI~t~p~ 152 (365)
+++|+++++|+++..++ + +|. |. .. +|+ .+.|+.||+|+--
T Consensus 561 gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGG 618 (1167)
T PTZ00306 561 RVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGG 618 (1167)
T ss_pred CcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCC
Confidence 67899999999998753 1 333 33 33 564 5789999999974
No 360
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.05 E-value=1.4e+02 Score=30.26 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHHHHHhc-----cCCeecCceeEEEEec-CCeeE-EE---EcCCc--EEEcCEEEEecChh
Q 017808 104 PVINTLAK-----GLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~-----~l~I~l~~~V~~I~~~-~~~v~-V~---~~~g~--~~~ad~VI~t~p~~ 153 (365)
.|...|.+ +++|.+++.|+++..+ +++|. |. ..+|+ .+.|+.||+|+--.
T Consensus 144 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 45555543 4679999999999875 44443 33 23564 57899999998754
No 361
>PLN02507 glutathione reductase
Probab=31.85 E-value=54 Score=32.32 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=30.0
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++.++++|.+||-+.. ....+-|...|+.+|+.|+.
T Consensus 326 ~~Ts~p~IyAiGDv~~~--~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 326 SRTNIPSIWAIGDVTNR--INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CcCCCCCEEEeeEcCCC--CccHHHHHHHHHHHHHHHcC
Confidence 44567899999999875 34788999999999998763
No 362
>PLN02661 Putative thiazole synthesis
Probab=31.35 E-value=1.4e+02 Score=28.03 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=33.2
Q ss_pred HHHHHHHhc--cCCeecCceeEEEEecCCeeE-EEE------cC--C------cEEEcCEEEEecC
Q 017808 103 LPVINTLAK--GLDIRLGHRVTKITRHYIGVK-VTV------EG--G------KTFVADAVVVAVP 151 (365)
Q Consensus 103 ~~L~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V~~------~~--g------~~~~ad~VI~t~p 151 (365)
..|.++..+ +++|+.++.|..+..+++++. |.. .+ + ..+.|++||+|+-
T Consensus 176 stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 176 STIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 345554443 568999999999988776642 331 11 1 2689999999997
No 363
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=30.78 E-value=64 Score=30.73 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=43.8
Q ss_pred CCccEEEeccCCCCCCCCCcCCCCCCCCCHHHHHHHhC----CCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 261 SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI----PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 261 ~~p~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~l~~----p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
..|+-+..++=--|. .|+|+...|.....+...++. |.++++|+||+..|. .|-+---..+..-|++++...
T Consensus 41 ~~pvLiEAT~NQVnq--~GGYTGmtP~dF~~~V~~iA~~~g~~~~~iiLGGDHLGP~--~w~~lpaeeAM~~A~~li~ay 116 (424)
T PF08013_consen 41 DSPVLIEATSNQVNQ--FGGYTGMTPADFRDFVREIADEVGFPRDRIILGGDHLGPN--PWQHLPAEEAMAKAKELIRAY 116 (424)
T ss_dssp -S-EEEEEETTTCST--T-TTTTB-HHHHHHHHHHHHHHCT--GGGEEEEEEEESSC--CCTTSBHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccccccc--cCCcCCCCHHHHHHHHHHHHHHcCCchhhEEecCCCCCcc--cccCCCHHHHHHHHHHHHHHH
Confidence 356655655433233 488886665444444444433 345799999999993 244444567777777776665
Q ss_pred HH-HhCCCCC
Q 017808 337 LE-RYGELDL 345 (365)
Q Consensus 337 ~~-~~~~~~~ 345 (365)
.+ -|.+|+.
T Consensus 117 v~AGF~KIHL 126 (424)
T PF08013_consen 117 VEAGFTKIHL 126 (424)
T ss_dssp HCTT--EEEE
T ss_pred HHcCCceEee
Confidence 43 3555554
No 364
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=30.76 E-value=55 Score=31.71 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=29.7
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. +...+-|+..|+.||..|..
T Consensus 294 ~~ts~~~IyA~GD~~~~--~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 294 TQTSVPGIYAAGDVNGK--PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cccCCCCEEEEEecCCC--ccchhHHHHHHHHHHHHhcC
Confidence 34567899999999865 34678899999999998864
No 365
>PLN02815 L-aspartate oxidase
Probab=30.48 E-value=72 Score=32.30 Aligned_cols=40 Identities=20% Similarity=0.138 Sum_probs=29.3
Q ss_pred hCCCCCEEEeccccC-CCC------cchhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATS-MSY------PGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~-~~~------~g~v~gA~~SG~~aA~~i~~~l 336 (365)
+++++|||-|||... ..+ ..++-.|+..|++|++.+...+
T Consensus 387 ~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 387 ETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred ceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999864 211 1256778889999999876543
No 366
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.34 E-value=56 Score=31.91 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=29.5
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. +...+-|...|+.+|+.|+.
T Consensus 300 ~~t~~p~VyAiGDv~~~--~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQ--PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCCCEEEehhhcCC--cccHHHHHHHHHHHHHHHcC
Confidence 34567899999998754 34788999999999998763
No 367
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=30.17 E-value=84 Score=30.73 Aligned_cols=55 Identities=29% Similarity=0.353 Sum_probs=36.4
Q ss_pred hHHHHHHHhc--cCCeecCceeEEEEecCC-ee-EEEE--cCC--cEEEcCEEEEecC-hhhhh
Q 017808 102 YLPVINTLAK--GLDIRLGHRVTKITRHYI-GV-KVTV--EGG--KTFVADAVVVAVP-LGVLK 156 (365)
Q Consensus 102 ~~~L~~~L~~--~l~I~l~~~V~~I~~~~~-~v-~V~~--~~g--~~~~ad~VI~t~p-~~~l~ 156 (365)
|..|.++..+ .++|.-++.+..|..+++ ++ -|.+ .++ .++.+++||+|+- .+.|.
T Consensus 136 ~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 136 MTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred HHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 4455555554 567888888888888887 44 2433 333 4688999999985 45544
No 368
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=29.57 E-value=1.5e+02 Score=28.79 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=28.9
Q ss_pred ccCCeecCceeEEEEecC-CeeE-EEEc---------CC-----------cEEEcCEEEEecCh
Q 017808 111 KGLDIRLGHRVTKITRHY-IGVK-VTVE---------GG-----------KTFVADAVVVAVPL 152 (365)
Q Consensus 111 ~~l~I~l~~~V~~I~~~~-~~v~-V~~~---------~g-----------~~~~ad~VI~t~p~ 152 (365)
++++|++++.+.+|..++ ++++ |++. +| .++.||.||+++..
T Consensus 322 ~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 322 EGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred CCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 477899999999997643 3342 3322 22 26899999998864
No 369
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=29.28 E-value=1.6e+02 Score=29.53 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=32.7
Q ss_pred HHHHHHHhccCCeecCceeEEEEecCCee---E---EEE----cCC---------cEEEcCEEEEecCh
Q 017808 103 LPVINTLAKGLDIRLGHRVTKITRHYIGV---K---VTV----EGG---------KTFVADAVVVAVPL 152 (365)
Q Consensus 103 ~~L~~~L~~~l~I~l~~~V~~I~~~~~~v---~---V~~----~~g---------~~~~ad~VI~t~p~ 152 (365)
..+.+...++++|++++.+.+|..+++++ . +.. .+| .++.||.||+++..
T Consensus 310 ~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 310 EEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred HHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 33444445678899999999997665442 1 221 122 36899999999874
No 370
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=29.11 E-value=72 Score=31.05 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=30.7
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
++.++++|-+||.+... ...|-|...|+.||+.|+.
T Consensus 299 ~Tnvp~IyA~GDV~~~~--~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 299 TTNVPGIYAIGDVIGGP--MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccCCCCEEEeeccCCCc--ccHhHHHHHHHHHHHHHhC
Confidence 44478999999998774 3899999999999999886
No 371
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.03 E-value=60 Score=29.72 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=36.2
Q ss_pred HHHHHHHhcc-----CCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAKG-----LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~~-----l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..|.+.+.+. +++.. ..|.+++..++.+.|+|.+|. ++|++||+|+-...
T Consensus 61 ~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 61 PELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 4455555542 23333 677778777667789999996 99999999998765
No 372
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=28.63 E-value=67 Score=31.39 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=29.3
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. +...+-|...|..+|+.|..
T Consensus 310 ~~Ts~~~VyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRG--PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CccCCCCEEEEEeccCC--cchHHHHHHHHHHHHHHHcC
Confidence 34557899999998864 24788899999999998753
No 373
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.61 E-value=66 Score=31.23 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=29.9
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|-+||.+.. +...+-|+..|+.+|+.|+.
T Consensus 297 ~~t~~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGG--PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CccCCCCEEEeeecCCC--cchHHHHHHHHHHHHHHHcC
Confidence 34567899999998864 35788899999999998864
No 374
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.15 E-value=1.5e+02 Score=29.91 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHHHhc-----cCCeecCceeEEEEecC-CeeE-EEE---cCCc--EEEcCEEEEecChh
Q 017808 104 PVINTLAK-----GLDIRLGHRVTKITRHY-IGVK-VTV---EGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~-----~l~I~l~~~V~~I~~~~-~~v~-V~~---~~g~--~~~ad~VI~t~p~~ 153 (365)
.|.+.|.+ +++|..++.|.++..++ ++|. |.. .+|+ .+.|+.||+|+--.
T Consensus 149 ~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 149 ALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 45555543 56899999999988753 4432 332 3554 57899999998753
No 375
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=27.55 E-value=94 Score=28.31 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=27.6
Q ss_pred CCEEEeccccCC---CCcchhHHHHHHHHHHHHHHHHHH
Q 017808 301 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 301 ~~l~~aG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
+++.+.||+.+. ..+.+++-|+++|...|+.|...+
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~ 329 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAAL 329 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHh
Confidence 589999999774 334489999999999998877654
No 376
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=27.39 E-value=86 Score=30.30 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=26.5
Q ss_pred HHHHh-CCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 293 YERLR-IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 293 ~~~l~-~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
.+.+. +.++||||||.-+.. -|++|. ..+|..|+-.+...+
T Consensus 321 ~~~l~~k~~~~lf~AGQi~G~--~GY~Ea-aa~Gl~agina~~~~ 362 (433)
T TIGR00137 321 TASLHFKDRQTLFFAGQLTGV--EGYVAS-TAGGWLAGINAARLA 362 (433)
T ss_pred hHHhccCCCCCEEECcccccc--hHHHHH-HHHHHHHHHHHHHHH
Confidence 34444 336799999999876 356654 466777776555444
No 377
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=27.37 E-value=71 Score=30.96 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.2
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
++..+++|.+||.+.. ....+-|+..|+.+|+.|..
T Consensus 296 ~t~~~~IyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGG--PMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred ccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4456899999998864 34788899999999998864
No 378
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=27.29 E-value=1.5e+02 Score=30.36 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=30.1
Q ss_pred cCCeecCceeEEEEec-CCeeE-EE--E-cCCc--EEEcCEEEEecChh
Q 017808 112 GLDIRLGHRVTKITRH-YIGVK-VT--V-EGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~-~~~v~-V~--~-~~g~--~~~ad~VI~t~p~~ 153 (365)
+++|..++.|.++..+ +++|. |. . .+|+ .+.|+.||+|+--.
T Consensus 201 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 201 NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 5789999999997765 44443 33 2 3563 57899999999753
No 379
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.15 E-value=69 Score=31.20 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=30.1
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||-+.. +...+-|...|+.+|+.|+.
T Consensus 301 ~~Ts~~~IyA~GD~~~~--~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 301 HRTSVPGVWVIGDVTSG--PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred eecCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45567899999999865 34788999999999998864
No 380
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.07 E-value=1e+02 Score=31.52 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=25.8
Q ss_pred hCCCCCEEEeccccCCCCcc------hhHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPG------SVHGAFSTGLMAAEDC 332 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g------~v~gA~~SG~~aA~~i 332 (365)
++.++|||-|||.+...|+. ++-+|+..|++|++.+
T Consensus 416 ~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~~ 457 (640)
T PRK07573 416 MSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPYT 457 (640)
T ss_pred ccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHHH
Confidence 46689999999975432222 3667788899998763
No 381
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=26.88 E-value=74 Score=30.90 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=30.0
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|-+||-+.. +...+-|...|+.||..|+.
T Consensus 292 ~~Ts~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 292 LRTSNPGIYAAGDVTGG--LQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred ccCCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHhcC
Confidence 45667899999999875 34678899999999998864
No 382
>PRK12831 putative oxidoreductase; Provisional
Probab=26.63 E-value=2e+02 Score=28.07 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=29.9
Q ss_pred HHhccCCeecCceeEEEEecCC-eeE-EEEc------------------CCc--EEEcCEEEEecCh
Q 017808 108 TLAKGLDIRLGHRVTKITRHYI-GVK-VTVE------------------GGK--TFVADAVVVAVPL 152 (365)
Q Consensus 108 ~L~~~l~I~l~~~V~~I~~~~~-~v~-V~~~------------------~g~--~~~ad~VI~t~p~ 152 (365)
...++++|++++.+.+|..+++ .|. |.+. +|+ ++.||.||+++..
T Consensus 328 a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 328 AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 3455788999999999876443 332 2221 222 5899999999864
No 383
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=26.60 E-value=75 Score=30.95 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=29.7
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.. ....+-|...|..||..++.
T Consensus 300 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 300 SRTSVPGIYAAGDCTGV--LPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred cccCCCCEEEEeeccCC--ccchhHHHHHHHHHHHHHcC
Confidence 34567899999999865 34788999999999988763
No 384
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=25.89 E-value=77 Score=30.74 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=29.4
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||-+.+ ....+-|...|+.+|+.|+.
T Consensus 291 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 291 GRTSARGVWALGDVSSP--YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred cccCCCCEEEeecccCc--ccChhHHHHHHHHHHHHhcC
Confidence 44567899999999875 34677899999999998864
No 385
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=25.59 E-value=1.6e+02 Score=28.72 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=28.7
Q ss_pred hccCCeecCceeEEEEecC-CeeE-EEE---c------CC-----------cEEEcCEEEEecCh
Q 017808 110 AKGLDIRLGHRVTKITRHY-IGVK-VTV---E------GG-----------KTFVADAVVVAVPL 152 (365)
Q Consensus 110 ~~~l~I~l~~~V~~I~~~~-~~v~-V~~---~------~g-----------~~~~ad~VI~t~p~ 152 (365)
.+++++++++.+.+|..++ +.+. |++ . +| .++.||.||+++..
T Consensus 332 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 4578899999999997543 3332 221 1 12 36899999998763
No 386
>PRK07846 mycothione reductase; Reviewed
Probab=25.36 E-value=83 Score=30.53 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=29.3
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||.+.+ ....+-|...|+.+|+.|+.
T Consensus 288 ~~Ts~p~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 288 QRTSAEGVFALGDVSSP--YQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred cccCCCCEEEEeecCCC--ccChhHHHHHHHHHHHHHcC
Confidence 44567899999999876 34677889999999988763
No 387
>PRK07804 L-aspartate oxidase; Provisional
Probab=25.32 E-value=1e+02 Score=30.72 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=27.2
Q ss_pred hCCCCCEEEeccccCCC-Cc------chhHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~-~~------g~v~gA~~SG~~aA~~i~~~ 335 (365)
++++++||-|||.+..+ ++ .++-.++..|++|++.+.+.
T Consensus 367 ~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~ 412 (541)
T PRK07804 367 RTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAH 412 (541)
T ss_pred cccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999986421 11 24555677888888877654
No 388
>PLN02815 L-aspartate oxidase
Probab=25.28 E-value=1.3e+02 Score=30.58 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=28.6
Q ss_pred cCCeecCceeEEEEecC-Ce---eE-EE---EcCCc--EEEcCEEEEecCh
Q 017808 112 GLDIRLGHRVTKITRHY-IG---VK-VT---VEGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 112 ~l~I~l~~~V~~I~~~~-~~---v~-V~---~~~g~--~~~ad~VI~t~p~ 152 (365)
+++|..+++|.++..++ ++ |. |. ..+|+ .+.|+.||+|+--
T Consensus 170 ~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG 220 (594)
T PLN02815 170 NITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGG 220 (594)
T ss_pred CCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCc
Confidence 46799999999988643 32 32 33 23564 4689999999974
No 389
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=25.20 E-value=93 Score=30.55 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=29.4
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++..+++|.+||-+... ....+-|+..|+.+|+.|+.
T Consensus 306 ~~Ts~p~IyA~GDv~~~~-~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILEDK-QELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecCCC-ccchHHHHHHHHHHHHHHhc
Confidence 445678999999987532 34677899999999998864
No 390
>PRK09077 L-aspartate oxidase; Provisional
Probab=25.16 E-value=1.7e+02 Score=29.12 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=32.7
Q ss_pred HHHHHHhc--cCCeecCceeEEEEecC------CeeE-EE--E-cCCc--EEEcCEEEEecChh
Q 017808 104 PVINTLAK--GLDIRLGHRVTKITRHY------IGVK-VT--V-EGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 104 ~L~~~L~~--~l~I~l~~~V~~I~~~~------~~v~-V~--~-~~g~--~~~ad~VI~t~p~~ 153 (365)
.|.+.+.+ +++|..+++|..+..++ ++|. |. . .+|+ .+.|+.||+|+--.
T Consensus 143 ~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 143 TLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 34444433 57899999999887643 4443 33 2 3454 57899999999653
No 391
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=24.94 E-value=94 Score=33.65 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017808 300 VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 337 (365)
Q Consensus 300 ~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 337 (365)
++++|.|||.+.. +.+..|+.+|..||..|+..+.
T Consensus 438 v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 438 VQGCILAGAANGL---FGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred CCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcC
Confidence 5799999998754 4677799999999998877653
No 392
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=24.36 E-value=84 Score=29.15 Aligned_cols=29 Identities=45% Similarity=0.643 Sum_probs=19.1
Q ss_pred CCEEEeccccCCCCcchhHHH---HHHHHHHHHH
Q 017808 301 DNLFFAGEATSMSYPGSVHGA---FSTGLMAAED 331 (365)
Q Consensus 301 ~~l~~aG~~~~~~~~g~v~gA---~~SG~~aA~~ 331 (365)
++|+|||.-|... |+++.| +..|+.||+.
T Consensus 335 p~l~fAGQitG~E--GYveSaA~Gllag~naa~~ 366 (439)
T COG1206 335 PNLFFAGQITGVE--GYVESAASGLLAGINAARL 366 (439)
T ss_pred CCcEEeeeeecch--hhhHHhhhhHHHhhHHHHH
Confidence 5999999999773 566654 3444455543
No 393
>PLN02546 glutathione reductase
Probab=24.07 E-value=86 Score=31.48 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=29.7
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 334 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 334 (365)
+++.++++|-+||-+.. ....+-|+..|..+|+.|+.
T Consensus 376 l~Ts~p~IYAaGDv~~~--~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 376 SRTSVPSIWAVGDVTDR--INLTPVALMEGGALAKTLFG 412 (558)
T ss_pred ceeCCCCEEEeeccCCC--cccHHHHHHHHHHHHHHHcC
Confidence 34567899999999875 35788899999999988763
No 394
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=23.36 E-value=90 Score=30.29 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=28.9
Q ss_pred HhCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHH
Q 017808 296 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 296 l~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~ 333 (365)
+++..+++|.+||.+.. ....+-|+..|+.||..+.
T Consensus 293 ~~ts~~~VyA~GD~~~~--~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 293 MQTNVPHIYACGDVIGG--IQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred eecCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHc
Confidence 34557899999999864 3578889999999998875
No 395
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=23.26 E-value=1.2e+02 Score=30.90 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=29.7
Q ss_pred CCeecCceeEEEEecC---CeeE-EE---EcCCc--EEEcCEEEEecChh
Q 017808 113 LDIRLGHRVTKITRHY---IGVK-VT---VEGGK--TFVADAVVVAVPLG 153 (365)
Q Consensus 113 l~I~l~~~V~~I~~~~---~~v~-V~---~~~g~--~~~ad~VI~t~p~~ 153 (365)
++|..++.|.++..++ ++|. |. ..+|+ .+.|+.||+|+-..
T Consensus 141 ~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 141 GDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred CeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 5899999999998754 3432 32 24564 57899999999764
No 396
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=23.24 E-value=1.7e+02 Score=31.67 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=30.8
Q ss_pred HHHHHhccCCeecCceeEEEEecCCeeE-----------------EEEcCCcEEEcCEEEEecChh
Q 017808 105 VINTLAKGLDIRLGHRVTKITRHYIGVK-----------------VTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 105 L~~~L~~~l~I~l~~~V~~I~~~~~~v~-----------------V~~~~g~~~~ad~VI~t~p~~ 153 (365)
+-+++.+++++++++.+.+|..+ +++. +.+.++.++.||.||+++...
T Consensus 714 le~AleeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 714 YEEALEDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHHHHHcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 34444557778888888888532 2221 223344679999999998753
No 397
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=23.23 E-value=16 Score=33.65 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=24.1
Q ss_pred hCCCCCEEEeccccCCCCcchhH-----------HHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVH-----------GAFSTGLMAAEDC 332 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~-----------gA~~SG~~aA~~i 332 (365)
-+|+++||-|||....+ .|++| ||+-||+.|.+.+
T Consensus 503 GqPvpgLyAaGEvAGFG-GGG~HGY~ALEGTFLGgCiFSGRaAGRaa 548 (552)
T COG3573 503 GQPVPGLYAAGEVAGFG-GGGVHGYRALEGTFLGGCIFSGRAAGRAA 548 (552)
T ss_pred CCCCcchhhcchhcccC-CCcccchhhhccceecceeecchhhhhhh
Confidence 37899999999987653 23444 4677777766554
No 398
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=23.13 E-value=1.3e+02 Score=28.47 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=27.8
Q ss_pred CCEEEeccccCC---CCcchhHHHHHHHHHHHHHHHHH
Q 017808 301 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMR 335 (365)
Q Consensus 301 ~~l~~aG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~ 335 (365)
+|++++||+.|. ..+.+++.|++.|...|+.+.+.
T Consensus 279 grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~ 316 (392)
T PRK08243 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEF 316 (392)
T ss_pred CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 689999999774 33348999999999999877653
No 399
>PRK07395 L-aspartate oxidase; Provisional
Probab=22.79 E-value=1.1e+02 Score=30.71 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCCCCEEEeccccCCC-Ccc------hhHHHHHHHHHHHHHHH
Q 017808 298 IPVDNLFFAGEATSMS-YPG------SVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 298 ~p~~~l~~aG~~~~~~-~~g------~v~gA~~SG~~aA~~i~ 333 (365)
+++++||-|||.+..+ |+. ++-.++..|++|++.+.
T Consensus 358 t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 358 TSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred ccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999976421 111 34446777888888765
No 400
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.60 E-value=1.1e+02 Score=32.85 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=30.7
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 336 (365)
.+.++|||-|||.....+ .++-+|+..|.+|++.+.+.+
T Consensus 371 ~T~v~GLfAaGE~a~~~~-nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 371 RTTVPGLYAAGDLACVPH-NYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred cccCCCeEechhccCcch-hhhhhHHHhHHHHHHHHHHHH
Confidence 456899999999765433 477788999999999887654
No 401
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=22.37 E-value=1.4e+02 Score=18.09 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=13.5
Q ss_pred EecCCeeEEEEcCCcEEE
Q 017808 125 TRHYIGVKVTVEGGKTFV 142 (365)
Q Consensus 125 ~~~~~~v~V~~~~g~~~~ 142 (365)
...++.++|.+.+|++..
T Consensus 20 ~~~g~~vtV~~~~G~~~t 37 (42)
T PF02736_consen 20 EEEGDKVTVKTEDGKEVT 37 (42)
T ss_dssp EEESSEEEEEETTTEEEE
T ss_pred EEcCCEEEEEECCCCEEE
Confidence 456788999999987543
No 402
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=22.21 E-value=1.6e+02 Score=25.71 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHhcc-----CCeecCceeEEEEecCCeeEEEEcCCcEEEcCEEEEecChhh
Q 017808 103 LPVINTLAKG-----LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 154 (365)
Q Consensus 103 ~~L~~~L~~~-----l~I~l~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~t~p~~~ 154 (365)
..|.+.|.+. .+|.. ..|.++..+....+|.|+.+ .+.||+||+++-...
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~t-EtVskv~~sskpF~l~td~~-~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIIT-ETVSKVDLSSKPFKLWTDAR-PVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHHHhhcceeee-eehhhccccCCCeEEEecCC-ceeeeeEEEecccce
Confidence 4567777652 24433 45788888888888877554 789999999998754
No 403
>PF03550 LolB: Outer membrane lipoprotein LolB; InterPro: IPR004565 This protein, LolB, is known so far only in the gamma subdivision of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 []. Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane.; GO: 0015031 protein transport, 0009279 cell outer membrane; PDB: 1IWM_B 1IWN_A.
Probab=21.86 E-value=1.4e+02 Score=24.21 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=20.8
Q ss_pred cCceeEEEEecCCeeEEEEcCCcEEEcC
Q 017808 117 LGHRVTKITRHYIGVKVTVEGGKTFVAD 144 (365)
Q Consensus 117 l~~~V~~I~~~~~~v~V~~~~g~~~~ad 144 (365)
|+..+.+|..+++.+++...+|+.+.++
T Consensus 41 lG~~~~~l~~~~~~~~L~~~~g~~~~a~ 68 (157)
T PF03550_consen 41 LGQTVARLEGDPQGATLIDSDGQTYQAD 68 (157)
T ss_dssp TS-EEEEEEEETTEEEEE-TTS-EEEES
T ss_pred CCccEEEEEECCCEEEEEECCCcEEecC
Confidence 6778899999999999998888877653
No 404
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=21.77 E-value=1.2e+02 Score=29.73 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=29.0
Q ss_pred hCCCCCEEEeccccCCCCcc-------hhHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 336 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 336 (365)
++.+++||-+||-.+.+..| ++--++..|.++|+.|...+
T Consensus 351 rTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 351 RTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred cccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 46688999999998774322 33335678899999888765
No 405
>PLN02852 ferredoxin-NADP+ reductase
Probab=21.74 E-value=98 Score=30.52 Aligned_cols=41 Identities=7% Similarity=0.023 Sum_probs=33.2
Q ss_pred hCCCCCEEEeccccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017808 297 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 338 (365)
Q Consensus 297 ~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 338 (365)
.++++++|.||+...+. .|.+-.++..|..+|+.|++.+..
T Consensus 383 ~T~ipGvyAaGDi~~Gp-~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 383 ADTEPGLYVVGWLKRGP-TGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ccCCCCEEEeeeEecCC-CCeeeecHhhHHHHHHHHHHHHHc
Confidence 35678999999998753 357778899999999999988754
No 406
>PRK06184 hypothetical protein; Provisional
Probab=21.23 E-value=1.1e+02 Score=29.97 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=24.3
Q ss_pred CCEEEeccccCCC--Cc-chhHHHHHHHHHHHHHHH
Q 017808 301 DNLFFAGEATSMS--YP-GSVHGAFSTGLMAAEDCR 333 (365)
Q Consensus 301 ~~l~~aG~~~~~~--~~-g~v~gA~~SG~~aA~~i~ 333 (365)
++++++||+.|.. +. -+++.+++.+...|.++.
T Consensus 281 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa 316 (502)
T PRK06184 281 GRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLA 316 (502)
T ss_pred CcEEEeccccccCCCcccccccchHHHHHHHHHHHH
Confidence 6999999997752 22 378888888887776654
No 407
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=21.15 E-value=80 Score=30.82 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=17.7
Q ss_pred EEEcCCcEEEcCEEEEecChh
Q 017808 133 VTVEGGKTFVADAVVVAVPLG 153 (365)
Q Consensus 133 V~~~~g~~~~ad~VI~t~p~~ 153 (365)
|+..||+++.+|.||+++...
T Consensus 267 V~f~DG~~~~~D~Ii~~TGy~ 287 (461)
T PLN02172 267 IVFKNGKVVYADTIVHCTGYK 287 (461)
T ss_pred EEECCCCCccCCEEEECCcCC
Confidence 667889889999999998753
No 408
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=20.86 E-value=2.2e+02 Score=30.94 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=29.3
Q ss_pred HHHHHHhccCCeecCceeEEEEecCCeeEEE---------------EcCCc--EEEcCEEEEecCh
Q 017808 104 PVINTLAKGLDIRLGHRVTKITRHYIGVKVT---------------VEGGK--TFVADAVVVAVPL 152 (365)
Q Consensus 104 ~L~~~L~~~l~I~l~~~V~~I~~~~~~v~V~---------------~~~g~--~~~ad~VI~t~p~ 152 (365)
.+-+++.++++++++..+.+|. ++++.+. ..+|+ ++.||.||+++..
T Consensus 711 El~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~ 774 (1012)
T TIGR03315 711 ELEEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGE 774 (1012)
T ss_pred HHHHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCC
Confidence 3444555677788887777776 2333221 11233 6899999999875
Done!