BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017810
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 262 RQHELPPKSDLLITDERYPHIVRTEWETMDNIRNKASSVIGDQTIDLEEKMIRGLTQVP 320
RQ EL S + I+ + P +V+T E +N R++ G + +D RGL +VP
Sbjct: 204 RQAELVVTSTVDISAQARPSLVKTA-EAFENARSQVEPFXGAEGLDRXIATFRGLAEVP 261
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 11 FSTSTKPPPEHLIIMVNGLIGSAADWRFAAEQFVKKVPDKVIVHRSECNSSKLTFDGVDL 70
F+ T P L+++V+GL+GS ADW+ P + R++C + L G
Sbjct: 9 FAKPTARTP--LVVLVHGLLGSGADWQ----------PVLSHLARTQCAALTLDLPGHGT 56
Query: 71 MGERLA---AEVLAVVKRRPEVQKIS-----FVAHSLGGLIARYAIGR 110
ER AE + +++ + S V +SLGG + + + +
Sbjct: 57 NPERHCDNFAEAVEXIEQTVQAHVTSEVPVILVGYSLGGRLIXHGLAQ 104
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 15 TKPPPEHLIIMVNGLIGS-----AADWRFAAEQFVKKVPDKVIVHRSECNSSKLTFDGVD 69
T + +I+V+GL G+ D+ + + ++ KV V S DG +
Sbjct: 2 TYAATRYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSD---DGPN 58
Query: 70 LMGERLAAEVLAVVKRRPEVQKISFVAHSLGGLIARYAIGRLYEHSPEHRPIGIP 124
GE+L A V V+ K++ + HS GGL +RY + IG P
Sbjct: 59 GRGEQLLAYVKQVLAATGAT-KVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 112
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 15 TKPPPEHLIIMVNGLIGS-----AADWRFAAEQFVKKVPDKVIVHRSECNSSKLTFDGVD 69
T + +I+V+GL G+ D+ + + ++ KV V S DG +
Sbjct: 3 TYAATRYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSD---DGPN 59
Query: 70 LMGERLAAEVLAVVKRRPEVQKISFVAHSLGGLIARYAIGRLYEHSPEHRPIGIP 124
GE+L A V V+ K++ + HS GGL +RY + IG P
Sbjct: 60 GRGEQLLAYVKQVLAATGAT-KVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 113
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 23 IIMVNGLIGS-----AADWRFAAEQFVKKVPDKVIVHRSECNSSKLTFDGVDLMGERLAA 77
+I+V+GL G+ D+ + + ++ KV V S DG + GE+L A
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSD---DGPNGRGEQLLA 67
Query: 78 EVLAVVKRRPEVQKISFVAHSLGGLIARY 106
V V+ K++ + HS GGL +RY
Sbjct: 68 YVKQVLAATGAT-KVNLIGHSQGGLTSRY 95
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 23 IIMVNGLIGS------AADWRFAAEQFVKKVPDKVIVHRSECNSSKLTFDGVDLMGERLA 76
II+V+GL G+ W E ++ + + S S DG + GE+L
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSD----DGPNGRGEQLL 66
Query: 77 AEVLAVVKRRPEVQKISFVAHSLGGLIARY 106
A V V+ K++ V HS GGL +RY
Sbjct: 67 AYVKTVLAAT-GATKVNLVGHSQGGLTSRY 95
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 23 IIMVNGLIGS------AADWRFAAEQFVKKVPDKVIVHRSECNSSKLTFDGVDLMGERLA 76
II+V+GL G+ W E ++ + + S S DG + GE+L
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSD----DGPNGRGEQLL 66
Query: 77 AEVLAVVKRRPEVQKISFVAHSLGGLIARY 106
A V V+ K++ V HS GGL +RY
Sbjct: 67 AYVKTVLAAT-GATKVNLVGHSQGGLTSRY 95
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 48 PDKVIVHRSECNSSKLTFDGVDLMGERLAAEVLAVVKRR----PEVQKISFVAHSLGGLI 103
P + R+ +T GV +M LA E++ + + E + + H + G +
Sbjct: 497 PTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL 556
Query: 104 ARYAIGRLYEHSPEHRPIGIPKVAGIPTIATTEEHRNDSVQSLEHP 149
++I +L + EH P PKV A T+ ++LEHP
Sbjct: 557 HNFSILKLETPAYEHCPACSPKVIE----AFTDLGWEFVKKALEHP 598
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 48 PDKVIVHRSECNSSKLTFDGVDLMGERLAAEVLAVVKRR----PEVQKISFVAHSLGGLI 103
P + R+ +T GV +M LA E++ + + E + + H + G +
Sbjct: 496 PTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL 555
Query: 104 ARYAIGRLYEHSPEHRPIGIPKVAGIPTIATTEEHRNDSVQSLEHPCK-ARIAGL 157
++I +L + EH P PKV A T+ ++LEHP I+GL
Sbjct: 556 HNFSILKLETPAYEHCPACSPKVIE----AFTDLGWEFVKKALEHPLYLEEISGL 606
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 48 PDKVIVHRSECNSSKLTFDGVDLMGERLAAEVLAVVKRR----PEVQKISFVAHSLGGLI 103
P + R+ +T GV +M LA E++ + + E + + H + G +
Sbjct: 497 PTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL 556
Query: 104 ARYAIGRLYEHSPEHRPIGIPKVAGIPTIATTEEHRNDSVQSLEHPCK-ARIAGL 157
++I +L + EH P PKV A T+ ++LEHP I+GL
Sbjct: 557 HNFSILKLETPAYEHCPACSPKVIE----AFTDLGWEFVKKALEHPLYLEEISGL 607
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 48 PDKVIVHRSECNSSKLTFDGVDLMGERLAAEVLAVVKRR----PEVQKISFVAHSLGGLI 103
P + R+ +T GV +M LA E++ + + E + + H + G +
Sbjct: 496 PTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL 555
Query: 104 ARYAIGRLYEHSPEHRPIGIPKVAGIPTIATTEEHRNDSVQSLEHPCK-ARIAGL 157
++I +L + EH P PKV A T+ ++LEHP I+GL
Sbjct: 556 HNFSILKLETPAYEHCPACSPKVIE----AFTDLGWEFVKKALEHPLYLEEISGL 606
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 48 PDKVIVHRSECNSSKLTFDGVDLMGERLAAEVLAVVKRR----PEVQKISFVAHSLGGLI 103
P + R+ +T GV +M LA E++ + + E + + H + G +
Sbjct: 208 PTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL 267
Query: 104 ARYAIGRLYEHSPEHRPIGIPKVAGIPTIATTEEHRNDSVQSLEHPCK-ARIAGL 157
++I +L + EH P PKV A T+ ++LEHP I+GL
Sbjct: 268 HNFSILKLETPAYEHCPACSPKVIE----AFTDLGWEFVKKALEHPLYLEEISGL 318
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 48 PDKVIVHRSECNSSKLTFDGVDLMGERLAAEVLAVVKRR----PEVQKISFVAHSLGGLI 103
P + R+ +T GV +M LA E++ + + E + + H + G +
Sbjct: 204 PTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL 263
Query: 104 ARYAIGRLYEHSPEHRPIGIPKVAGIPTIATTEEHRNDSVQSLEHPCK-ARIAGL 157
++I +L + EH P PKV A T+ ++LEHP I+GL
Sbjct: 264 HNFSILKLETPAYEHCPACSPKVIE----AFTDLGWEFVKKALEHPLYLEEISGL 314
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 76 AAEVLAVVKRRPEVQKISFVAHSLGGLIARYAIG 109
A +L VK P V+ I V HS GG++A G
Sbjct: 105 ANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAG 138
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 228 NLKFISALRAFKRRVAYANANYDHMVGWRTSSIRRQHELPPKS------DLLITDERYPH 281
N + AL+ + A D ++ WR R +++PP S I D RY H
Sbjct: 112 NERHYGALQGLNKSETAAKYGEDKVLIWR-----RSYDVPPXSLDESDDRHPIKDPRYKH 166
Query: 282 IVRTEWETMDNIRNKASSVIGDQTIDLEEKMIRG 315
I + E + + +++ + VI T ++ ++++ G
Sbjct: 167 IPKRELPSTECLKDTVARVIPYWTDEIAKEVLEG 200
>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain
Length = 425
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 200 GRTGKHLFLNDRDDGKPPLLLQMVNDSDN 228
G+T ++F D +DGKPPL L +N SDN
Sbjct: 92 GKTYDYVFDVDIEDGKPPLKLP-INVSDN 119
>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain
Length = 425
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 200 GRTGKHLFLNDRDDGKPPLLLQMVNDSDN 228
G+T ++F D +DGKPPL L +N SDN
Sbjct: 92 GKTYDYVFDVDIEDGKPPLKLP-INVSDN 119
>pdb|3L3F|X Chain X, Crystal Structure Of A Pfu-Pul Domain Pair Of
Saccharomyces Cerevisiae Doa1UFD3
Length = 362
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 200 GRTGKHLFLNDRDDGKPPLLLQMVNDSDN 228
G+T ++F D +DGKPPL L +N SDN
Sbjct: 29 GKTYDYVFDVDIEDGKPPLKLP-INVSDN 56
>pdb|2QBV|A Chain A, Crystal Structure Of Intracellular Chorismate Mutase
From Mycobacterium Tuberculosis
pdb|2VKL|A Chain A, X-Ray Crystal Structure Of The Intracellular Chorismate
Mutase From Mycobactrerium Tuberculosis In Complex With
Malate
pdb|2W19|C Chain C, Non-Covalent Complex Between Dahp Synthase And
Chorismate Mutase From Mycobacterium Tuberculosis
pdb|2W19|D Chain D, Non-Covalent Complex Between Dahp Synthase And
Chorismate Mutase From Mycobacterium Tuberculosis
pdb|2W1A|C Chain C, Non-Covalent Complex Between Dahp Synthase And
Chorismate Mutase From Mycobacterium Tuberculosis With
Bound Tsa
pdb|2W1A|D Chain D, Non-Covalent Complex Between Dahp Synthase And
Chorismate Mutase From Mycobacterium Tuberculosis With
Bound Tsa
Length = 90
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 73 ERLAAEVLAVVKRRPEVQK 91
+RL AE+LA+VKRR EV K
Sbjct: 22 DRLDAEILALVKRRAEVSK 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,719,284
Number of Sequences: 62578
Number of extensions: 423964
Number of successful extensions: 987
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 19
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)