Query 017811
Match_columns 365
No_of_seqs 365 out of 3420
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 2.1E-55 4.5E-60 404.5 33.8 318 35-362 65-389 (397)
2 KOG0545 Aryl-hydrocarbon recep 100.0 1.7E-37 3.7E-42 266.7 16.3 280 51-331 9-329 (329)
3 KOG0544 FKBP-type peptidyl-pro 100.0 3.1E-30 6.7E-35 187.7 10.8 105 53-161 2-107 (108)
4 COG0545 FkpA FKBP-type peptidy 100.0 3.6E-30 7.8E-35 217.1 11.2 128 19-161 77-204 (205)
5 KOG0549 FKBP-type peptidyl-pro 99.9 1E-24 2.2E-29 179.9 12.3 110 52-165 68-179 (188)
6 PRK11570 peptidyl-prolyl cis-t 99.9 9.3E-25 2E-29 190.6 12.1 124 23-161 82-205 (206)
7 KOG0552 FKBP-type peptidyl-pro 99.9 3.8E-23 8.2E-28 179.0 14.1 109 48-161 116-225 (226)
8 PRK10902 FKBP-type peptidyl-pr 99.9 1.4E-22 3E-27 183.3 12.8 130 21-166 124-253 (269)
9 TIGR03516 ppisom_GldI peptidyl 99.9 3.1E-22 6.7E-27 170.6 14.2 113 45-162 62-176 (177)
10 KOG0553 TPR repeat-containing 99.9 9.7E-22 2.1E-26 175.3 13.6 128 174-318 73-200 (304)
11 KOG4234 TPR repeat-containing 99.8 2.8E-20 6E-25 156.4 14.5 135 177-323 90-224 (271)
12 PF00254 FKBP_C: FKBP-type pep 99.8 8.7E-20 1.9E-24 140.6 11.4 91 66-159 4-94 (94)
13 KOG0543 FKBP-type peptidyl-pro 99.8 2.9E-17 6.2E-22 152.4 19.6 260 60-339 1-328 (397)
14 KOG0550 Molecular chaperone (D 99.8 2.7E-18 5.9E-23 158.4 10.6 157 177-350 244-403 (486)
15 KOG0547 Translocase of outer m 99.7 3.5E-17 7.5E-22 153.8 14.4 129 170-315 103-232 (606)
16 KOG0548 Molecular co-chaperone 99.7 7.1E-17 1.5E-21 153.6 12.6 117 181-314 357-473 (539)
17 KOG4648 Uncharacterized conser 99.7 8.7E-17 1.9E-21 145.4 10.1 123 173-312 88-210 (536)
18 PLN03088 SGT1, suppressor of 99.6 4E-15 8.7E-20 142.0 14.9 118 183-317 3-120 (356)
19 TIGR00990 3a0801s09 mitochondr 99.6 9E-15 1.9E-19 149.9 18.2 136 144-301 93-228 (615)
20 KOG0551 Hsp90 co-chaperone CNS 99.6 2.4E-15 5.3E-20 135.6 11.4 108 180-300 79-186 (390)
21 PRK15095 FKBP-type peptidyl-pr 99.6 3.6E-15 7.8E-20 124.8 8.9 72 66-139 4-75 (156)
22 PRK15359 type III secretion sy 99.6 3.4E-14 7.3E-19 118.2 14.3 113 185-314 27-139 (144)
23 KOG0548 Molecular co-chaperone 99.5 4E-14 8.6E-19 135.0 11.1 113 182-311 2-114 (539)
24 TIGR02552 LcrH_SycD type III s 99.5 1.2E-12 2.6E-17 107.3 14.5 116 181-313 16-131 (135)
25 KOG4642 Chaperone-dependent E3 99.5 1.2E-13 2.5E-18 119.6 8.3 115 180-311 8-127 (284)
26 KOG0624 dsRNA-activated protei 99.5 3.3E-13 7.2E-18 122.4 11.4 163 176-354 263-428 (504)
27 PRK15363 pathogenicity island 99.5 1.5E-12 3.2E-17 107.5 13.7 103 181-300 34-136 (157)
28 KOG0376 Serine-threonine phosp 99.4 2.1E-13 4.4E-18 129.2 7.9 120 181-317 3-122 (476)
29 COG1047 SlpA FKBP-type peptidy 99.4 7.1E-13 1.5E-17 110.5 9.3 71 67-139 3-73 (174)
30 TIGR00990 3a0801s09 mitochondr 99.4 5E-12 1.1E-16 129.7 15.6 155 181-336 330-501 (615)
31 KOG4626 O-linked N-acetylgluco 99.4 1.2E-12 2.7E-17 126.5 10.2 140 181-338 251-390 (966)
32 PRK10737 FKBP-type peptidyl-pr 99.4 1.3E-12 2.8E-17 112.5 8.8 70 67-139 3-72 (196)
33 PRK11189 lipoprotein NlpI; Pro 99.4 1E-11 2.2E-16 115.9 15.5 106 180-302 62-167 (296)
34 PRK15359 type III secretion sy 99.4 1.1E-11 2.3E-16 103.2 12.4 118 202-340 13-130 (144)
35 KOG4626 O-linked N-acetylgluco 99.4 6.2E-12 1.3E-16 121.7 12.4 105 233-338 388-492 (966)
36 COG3063 PilF Tfp pilus assembl 99.3 2.2E-11 4.9E-16 105.3 13.9 173 179-353 32-223 (250)
37 KOG0546 HSP90 co-chaperone CPR 99.3 2E-12 4.4E-17 118.1 6.9 156 175-330 215-372 (372)
38 PRK10370 formate-dependent nit 99.3 2.9E-11 6.2E-16 106.0 13.8 112 180-308 71-185 (198)
39 TIGR02795 tol_pal_ybgF tol-pal 99.3 5.5E-11 1.2E-15 94.6 12.2 112 183-308 3-117 (119)
40 PF13414 TPR_11: TPR repeat; P 99.3 8.7E-12 1.9E-16 89.9 6.6 65 234-298 4-69 (69)
41 PRK10370 formate-dependent nit 99.3 9.6E-11 2.1E-15 102.7 13.6 127 194-338 51-180 (198)
42 KOG1155 Anaphase-promoting com 99.2 1.7E-10 3.7E-15 108.6 14.2 129 187-333 335-463 (559)
43 KOG0624 dsRNA-activated protei 99.2 1E-10 2.2E-15 106.4 12.0 116 180-312 36-154 (504)
44 KOG1126 DNA-binding cell divis 99.2 4.9E-11 1.1E-15 116.7 10.4 136 182-335 421-556 (638)
45 PRK12370 invasion protein regu 99.2 2.5E-10 5.4E-15 115.6 14.9 120 195-332 317-436 (553)
46 PRK09782 bacteriophage N4 rece 99.2 3.2E-10 7E-15 120.4 16.2 110 186-312 613-722 (987)
47 PRK02603 photosystem I assembl 99.2 4.2E-10 9.1E-15 96.4 13.3 110 177-300 30-153 (172)
48 PRK09782 bacteriophage N4 rece 99.2 8.4E-10 1.8E-14 117.3 18.3 124 196-338 590-713 (987)
49 TIGR03302 OM_YfiO outer membra 99.2 5E-10 1.1E-14 100.7 14.2 113 181-307 32-155 (235)
50 TIGR02552 LcrH_SycD type III s 99.2 3.4E-10 7.3E-15 92.6 11.8 122 203-342 4-125 (135)
51 KOG1155 Anaphase-promoting com 99.2 7.7E-10 1.7E-14 104.3 15.3 133 182-332 364-496 (559)
52 KOG0547 Translocase of outer m 99.2 3.9E-10 8.4E-15 106.9 13.0 141 179-337 323-463 (606)
53 KOG1126 DNA-binding cell divis 99.2 2.6E-10 5.7E-15 111.6 12.2 136 184-337 491-626 (638)
54 PRK11189 lipoprotein NlpI; Pro 99.2 5.4E-10 1.2E-14 104.3 14.0 127 196-336 40-166 (296)
55 PRK12370 invasion protein regu 99.2 8.7E-10 1.9E-14 111.7 16.6 134 184-335 340-474 (553)
56 PF13432 TPR_16: Tetratricopep 99.2 1.5E-10 3.3E-15 82.3 7.7 65 237-301 1-65 (65)
57 PF12895 Apc3: Anaphase-promot 99.2 1.3E-10 2.8E-15 87.3 7.5 83 195-293 2-84 (84)
58 TIGR02521 type_IV_pilW type IV 99.1 1.4E-09 3.1E-14 95.9 15.5 149 182-331 31-198 (234)
59 cd00189 TPR Tetratricopeptide 99.1 4.8E-10 1E-14 83.6 10.6 98 185-299 3-100 (100)
60 PF13414 TPR_11: TPR repeat; P 99.1 1.3E-10 2.8E-15 83.7 6.0 67 181-264 2-69 (69)
61 PRK15179 Vi polysaccharide bio 99.1 1.1E-09 2.4E-14 112.2 14.9 138 181-336 85-222 (694)
62 PRK15174 Vi polysaccharide exp 99.1 9.6E-10 2.1E-14 113.4 14.3 129 189-335 219-351 (656)
63 TIGR02521 type_IV_pilW type IV 99.1 3.6E-09 7.8E-14 93.3 16.1 137 183-319 66-221 (234)
64 CHL00033 ycf3 photosystem I as 99.1 3E-09 6.5E-14 90.7 14.3 110 178-301 31-154 (168)
65 PRK15331 chaperone protein Sic 99.1 2E-09 4.4E-14 89.4 12.4 106 182-305 37-142 (165)
66 PLN02789 farnesyltranstransfer 99.0 6.3E-09 1.4E-13 97.6 15.6 141 181-338 70-219 (320)
67 PRK15174 Vi polysaccharide exp 99.0 3E-09 6.4E-14 109.8 14.0 133 184-334 248-384 (656)
68 KOG1308 Hsp70-interacting prot 99.0 2.2E-10 4.8E-15 104.4 4.8 109 174-299 106-214 (377)
69 KOG0553 TPR repeat-containing 99.0 1.7E-09 3.7E-14 97.3 10.4 101 236-337 84-184 (304)
70 COG5010 TadD Flp pilus assembl 99.0 4.8E-09 1E-13 92.7 12.7 124 183-323 101-224 (257)
71 PRK10803 tol-pal system protei 99.0 9.9E-09 2.2E-13 93.6 14.0 114 183-310 143-260 (263)
72 KOG1125 TPR repeat-containing 99.0 9.3E-10 2E-14 106.3 7.0 96 187-299 435-530 (579)
73 PRK11788 tetratricopeptide rep 99.0 2.2E-08 4.8E-13 96.7 16.7 133 185-336 183-316 (389)
74 TIGR02917 PEP_TPR_lipo putativ 99.0 1.2E-08 2.7E-13 107.7 15.9 137 180-334 123-259 (899)
75 KOG2076 RNA polymerase III tra 99.0 3.2E-08 7E-13 100.0 17.6 135 181-333 138-272 (895)
76 PRK11447 cellulose synthase su 99.0 1.6E-08 3.4E-13 111.0 16.8 126 183-311 304-429 (1157)
77 KOG4555 TPR repeat-containing 99.0 3.5E-08 7.5E-13 78.2 14.0 115 176-309 37-155 (175)
78 PRK11447 cellulose synthase su 99.0 7.8E-09 1.7E-13 113.3 14.4 133 187-337 274-420 (1157)
79 PLN02789 farnesyltranstransfer 99.0 1.4E-08 2.9E-13 95.4 14.1 128 192-337 47-177 (320)
80 PLN03088 SGT1, suppressor of 99.0 7.3E-09 1.6E-13 99.1 12.5 114 236-350 5-118 (356)
81 KOG1173 Anaphase-promoting com 99.0 5.9E-09 1.3E-13 100.6 11.6 80 233-312 455-534 (611)
82 PRK10866 outer membrane biogen 98.9 2.8E-08 6E-13 89.9 15.3 132 182-327 32-187 (243)
83 PF13371 TPR_9: Tetratricopept 98.9 5.3E-09 1.1E-13 76.0 8.2 71 239-309 1-71 (73)
84 KOG0550 Molecular chaperone (D 98.9 1.4E-08 3.1E-13 94.7 12.9 157 180-342 201-361 (486)
85 COG3063 PilF Tfp pilus assembl 98.9 1.8E-08 3.8E-13 87.6 12.4 118 231-349 33-150 (250)
86 PF13429 TPR_15: Tetratricopep 98.9 3.9E-09 8.5E-14 97.6 9.0 131 181-329 145-275 (280)
87 TIGR02917 PEP_TPR_lipo putativ 98.9 2.2E-08 4.7E-13 105.8 15.7 132 184-335 705-836 (899)
88 PF13512 TPR_18: Tetratricopep 98.9 2.3E-08 5E-13 81.4 10.9 111 182-306 10-138 (142)
89 PF14559 TPR_19: Tetratricopep 98.9 6.2E-09 1.3E-13 74.5 6.8 68 243-310 1-68 (68)
90 TIGR03302 OM_YfiO outer membra 98.9 4E-08 8.6E-13 88.3 13.7 131 183-328 71-229 (235)
91 PF13525 YfiO: Outer membrane 98.9 5.9E-08 1.3E-12 85.4 14.3 133 181-327 4-153 (203)
92 cd00189 TPR Tetratricopeptide 98.9 4.6E-08 1E-12 72.7 11.7 97 235-332 2-98 (100)
93 PRK10049 pgaA outer membrane p 98.9 3.5E-08 7.6E-13 103.8 14.8 113 183-313 50-162 (765)
94 KOG2003 TPR repeat-containing 98.8 1.7E-08 3.7E-13 95.1 10.3 141 184-342 492-632 (840)
95 PRK11788 tetratricopeptide rep 98.8 1.2E-07 2.5E-12 91.7 16.6 124 177-300 30-174 (389)
96 KOG1125 TPR repeat-containing 98.8 2.9E-08 6.3E-13 96.1 12.0 157 172-328 309-525 (579)
97 KOG2002 TPR-containing nuclear 98.8 6.5E-08 1.4E-12 98.6 14.9 149 185-349 273-425 (1018)
98 PRK15363 pathogenicity island 98.8 3.8E-08 8.2E-13 81.5 10.4 96 235-331 37-132 (157)
99 PF13432 TPR_16: Tetratricopep 98.8 1.5E-08 3.2E-13 72.0 6.2 64 187-267 2-65 (65)
100 COG4235 Cytochrome c biogenesi 98.8 7.8E-08 1.7E-12 87.1 12.2 117 179-312 153-272 (287)
101 COG4785 NlpI Lipoprotein NlpI, 98.8 9.7E-09 2.1E-13 88.3 5.8 134 146-302 35-168 (297)
102 PRK15179 Vi polysaccharide bio 98.8 1.3E-07 2.7E-12 97.3 15.0 104 179-299 117-220 (694)
103 COG1729 Uncharacterized protei 98.8 8.4E-08 1.8E-12 85.9 11.5 114 183-310 142-258 (262)
104 CHL00033 ycf3 photosystem I as 98.8 9E-08 1.9E-12 81.6 11.4 136 188-338 5-156 (168)
105 PRK01490 tig trigger factor; P 98.7 1.1E-06 2.3E-11 86.6 20.0 88 66-165 157-244 (435)
106 TIGR02795 tol_pal_ybgF tol-pal 98.7 9.9E-08 2.2E-12 75.6 10.3 102 235-337 4-111 (119)
107 PRK10049 pgaA outer membrane p 98.7 1.9E-07 4E-12 98.3 14.6 132 188-338 21-152 (765)
108 PRK14574 hmsH outer membrane p 98.7 2E-07 4.3E-12 97.6 14.3 155 182-338 34-205 (822)
109 TIGR00115 tig trigger factor. 98.7 1.4E-07 3E-12 92.1 12.2 88 66-165 146-233 (408)
110 PF14559 TPR_19: Tetratricopep 98.7 6.3E-08 1.4E-12 69.2 7.3 67 192-275 1-67 (68)
111 COG5010 TadD Flp pilus assembl 98.7 2.8E-07 6E-12 81.7 12.3 105 236-340 103-207 (257)
112 PF06552 TOM20_plant: Plant sp 98.7 3.2E-07 7E-12 77.1 11.9 110 197-323 6-136 (186)
113 PRK02603 photosystem I assembl 98.7 2.9E-07 6.3E-12 78.8 12.0 103 233-335 35-153 (172)
114 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 3.1E-07 6.7E-12 88.0 13.0 63 235-297 77-142 (453)
115 KOG2002 TPR-containing nuclear 98.7 1.6E-07 3.6E-12 95.7 11.7 144 184-335 454-597 (1018)
116 KOG1310 WD40 repeat protein [G 98.7 9.5E-08 2.1E-12 91.6 9.4 119 175-310 367-488 (758)
117 KOG4162 Predicted calmodulin-b 98.7 1.6E-07 3.5E-12 93.7 11.1 103 182-301 684-788 (799)
118 PF09976 TPR_21: Tetratricopep 98.6 3E-07 6.5E-12 76.4 10.9 134 178-327 7-143 (145)
119 KOG1173 Anaphase-promoting com 98.6 5.2E-07 1.1E-11 87.4 12.0 166 182-348 346-535 (611)
120 COG4783 Putative Zn-dependent 98.6 1E-06 2.2E-11 84.2 13.8 128 184-328 308-435 (484)
121 PF13371 TPR_9: Tetratricopept 98.6 2.7E-07 5.9E-12 66.9 7.8 70 189-275 2-71 (73)
122 PRK14720 transcript cleavage f 98.6 4.8E-07 1E-11 94.2 12.5 134 181-333 30-180 (906)
123 PF13424 TPR_12: Tetratricopep 98.6 9.3E-08 2E-12 70.4 5.2 65 233-297 5-76 (78)
124 KOG2076 RNA polymerase III tra 98.6 1.5E-06 3.2E-11 88.3 15.0 104 180-299 412-515 (895)
125 KOG2003 TPR repeat-containing 98.6 1.6E-07 3.4E-12 88.7 7.2 98 186-296 241-338 (840)
126 KOG1128 Uncharacterized conser 98.5 4.9E-07 1.1E-11 89.9 10.5 135 181-333 484-618 (777)
127 PF09976 TPR_21: Tetratricopep 98.5 4.8E-06 1E-10 69.1 15.0 96 184-294 50-145 (145)
128 PF13429 TPR_15: Tetratricopep 98.5 2.7E-07 5.8E-12 85.3 8.1 138 183-336 111-248 (280)
129 PF12688 TPR_5: Tetratrico pep 98.5 1.6E-06 3.6E-11 69.2 11.0 98 184-295 3-103 (120)
130 COG2956 Predicted N-acetylgluc 98.5 3.9E-06 8.5E-11 76.5 14.5 142 171-333 99-245 (389)
131 cd05804 StaR_like StaR_like; a 98.5 3.3E-06 7.1E-11 80.5 14.6 148 184-332 45-216 (355)
132 COG4235 Cytochrome c biogenesi 98.5 6.1E-06 1.3E-10 74.9 15.3 131 197-345 137-270 (287)
133 KOG1840 Kinesin light chain [C 98.5 1.8E-06 4E-11 85.1 12.9 146 178-333 237-398 (508)
134 PF13424 TPR_12: Tetratricopep 98.5 6.3E-07 1.4E-11 65.9 7.2 73 180-262 3-75 (78)
135 PF12569 NARP1: NMDA receptor- 98.4 1.8E-05 4E-10 78.8 19.0 98 235-334 196-293 (517)
136 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.8E-06 3.8E-11 82.9 11.3 72 178-263 71-142 (453)
137 KOG1129 TPR repeat-containing 98.4 6.4E-07 1.4E-11 81.6 7.4 143 185-328 293-455 (478)
138 PF12895 Apc3: Anaphase-promot 98.3 1.1E-06 2.4E-11 65.8 5.8 77 246-323 2-80 (84)
139 PF03704 BTAD: Bacterial trans 98.3 2.1E-05 4.6E-10 65.2 14.2 113 183-295 7-124 (146)
140 COG4783 Putative Zn-dependent 98.3 8.1E-06 1.8E-10 78.2 12.5 107 187-310 345-451 (484)
141 KOG3060 Uncharacterized conser 98.3 2.2E-05 4.7E-10 69.5 14.1 131 185-315 89-239 (289)
142 PRK10803 tol-pal system protei 98.3 4.4E-06 9.6E-11 76.3 10.3 104 234-338 143-253 (263)
143 TIGR00540 hemY_coli hemY prote 98.3 3E-05 6.5E-10 75.8 16.6 138 176-331 78-216 (409)
144 COG0544 Tig FKBP-type peptidyl 98.3 4.1E-06 8.9E-11 81.6 10.3 87 67-165 158-244 (441)
145 KOG1156 N-terminal acetyltrans 98.3 1.6E-05 3.5E-10 78.4 14.1 120 184-320 9-128 (700)
146 PRK10747 putative protoheme IX 98.3 3.9E-05 8.5E-10 74.7 16.8 140 176-333 78-218 (398)
147 cd05804 StaR_like StaR_like; a 98.3 8.3E-06 1.8E-10 77.7 11.7 99 183-298 115-217 (355)
148 COG2956 Predicted N-acetylgluc 98.3 1.8E-05 3.9E-10 72.2 12.9 124 184-319 143-267 (389)
149 PRK10153 DNA-binding transcrip 98.2 2.2E-05 4.9E-10 78.5 14.6 120 182-302 339-488 (517)
150 PRK14574 hmsH outer membrane p 98.2 1.5E-05 3.3E-10 83.7 13.6 112 184-313 104-215 (822)
151 TIGR00540 hemY_coli hemY prote 98.2 1.2E-05 2.7E-10 78.4 11.8 132 181-329 262-397 (409)
152 PF12688 TPR_5: Tetratrico pep 98.2 2.5E-05 5.4E-10 62.5 11.4 89 235-323 3-97 (120)
153 PRK11906 transcriptional regul 98.2 1.7E-05 3.7E-10 76.3 12.2 123 198-338 274-408 (458)
154 PF00515 TPR_1: Tetratricopept 98.2 2.9E-06 6.2E-11 51.7 4.6 33 268-300 2-34 (34)
155 PF14938 SNAP: Soluble NSF att 98.2 1.4E-05 3E-10 74.1 11.2 110 180-300 112-229 (282)
156 PRK14720 transcript cleavage f 98.2 2E-05 4.4E-10 82.3 13.4 135 184-336 67-203 (906)
157 COG4105 ComL DNA uptake lipopr 98.2 7.3E-05 1.6E-09 66.7 14.6 143 182-338 34-203 (254)
158 KOG4151 Myosin assembly protei 98.2 6.3E-06 1.4E-10 83.1 8.6 126 173-311 44-171 (748)
159 KOG1129 TPR repeat-containing 98.2 1.3E-05 2.8E-10 73.3 9.6 100 187-304 228-327 (478)
160 KOG1840 Kinesin light chain [C 98.1 2.9E-05 6.4E-10 76.7 12.8 110 179-297 280-397 (508)
161 PF13431 TPR_17: Tetratricopep 98.1 2.2E-06 4.8E-11 52.4 2.9 33 255-287 1-33 (34)
162 KOG1128 Uncharacterized conser 98.1 2.1E-05 4.5E-10 78.6 10.9 105 233-338 485-589 (777)
163 KOG4234 TPR repeat-containing 98.1 1.9E-05 4.1E-10 67.5 8.9 99 239-338 101-204 (271)
164 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 2.7E-05 5.9E-10 74.9 10.7 99 188-303 206-304 (395)
165 PF07719 TPR_2: Tetratricopept 98.1 9.7E-06 2.1E-10 49.2 5.0 34 267-300 1-34 (34)
166 PF14938 SNAP: Soluble NSF att 98.1 3.2E-05 6.9E-10 71.7 10.7 160 179-351 32-209 (282)
167 KOG4162 Predicted calmodulin-b 98.1 4.8E-05 1E-09 76.5 12.2 135 183-335 651-787 (799)
168 PF00515 TPR_1: Tetratricopept 98.0 4.2E-06 9E-11 51.0 3.0 32 235-266 3-34 (34)
169 PRK10747 putative protoheme IX 98.0 5.1E-05 1.1E-09 73.8 12.2 125 184-330 265-389 (398)
170 PF15015 NYD-SP12_N: Spermatog 98.0 6.3E-05 1.4E-09 70.9 11.8 115 181-295 175-290 (569)
171 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 3E-10 51.9 5.1 40 269-308 3-42 (44)
172 KOG4648 Uncharacterized conser 98.0 1.5E-05 3.3E-10 73.2 7.0 98 236-334 100-197 (536)
173 KOG3060 Uncharacterized conser 98.0 0.00028 6E-09 62.6 14.0 90 180-286 152-244 (289)
174 PF13525 YfiO: Outer membrane 97.9 0.00036 7.8E-09 61.3 14.5 115 184-312 44-186 (203)
175 PRK11906 transcriptional regul 97.9 0.00014 3.1E-09 70.1 12.5 90 195-301 317-406 (458)
176 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00013 2.8E-09 70.3 12.3 107 195-321 182-288 (395)
177 PF04733 Coatomer_E: Coatomer 97.9 5.4E-05 1.2E-09 70.3 9.4 119 190-327 139-261 (290)
178 KOG1174 Anaphase-promoting com 97.9 0.00014 3E-09 68.6 11.9 135 182-316 232-383 (564)
179 COG1729 Uncharacterized protei 97.9 7.7E-05 1.7E-09 67.1 9.9 102 236-338 144-251 (262)
180 KOG1174 Anaphase-promoting com 97.9 7.9E-05 1.7E-09 70.2 10.2 138 182-336 300-438 (564)
181 PF13428 TPR_14: Tetratricopep 97.9 2.1E-05 4.5E-10 51.1 4.6 42 235-276 3-44 (44)
182 COG4785 NlpI Lipoprotein NlpI, 97.9 2.4E-05 5.1E-10 67.7 5.8 75 232-306 64-138 (297)
183 PF12569 NARP1: NMDA receptor- 97.9 0.00025 5.4E-09 70.8 13.9 56 268-323 195-250 (517)
184 PRK10153 DNA-binding transcrip 97.9 9.7E-05 2.1E-09 74.0 11.0 36 234-269 454-489 (517)
185 KOG1127 TPR repeat-containing 97.9 0.00012 2.6E-09 75.6 11.2 136 188-323 498-652 (1238)
186 PRK15331 chaperone protein Sic 97.8 9.9E-05 2.1E-09 61.7 8.6 94 236-330 40-133 (165)
187 PF12968 DUF3856: Domain of Un 97.8 0.0011 2.3E-08 52.1 13.5 106 186-296 13-129 (144)
188 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 0.00013 2.8E-09 49.2 7.5 48 268-315 2-49 (53)
189 PRK10866 outer membrane biogen 97.8 0.00059 1.3E-08 61.8 14.2 70 235-304 34-106 (243)
190 KOG4555 TPR repeat-containing 97.8 0.00031 6.6E-09 56.1 10.4 91 237-328 47-141 (175)
191 COG4700 Uncharacterized protei 97.8 0.00068 1.5E-08 57.6 12.5 101 184-301 91-194 (251)
192 KOG1156 N-terminal acetyltrans 97.8 0.00043 9.3E-09 68.6 13.0 98 183-297 76-173 (700)
193 PF07719 TPR_2: Tetratricopept 97.7 4.1E-05 8.9E-10 46.3 3.7 32 235-266 3-34 (34)
194 KOG4814 Uncharacterized conser 97.7 0.0017 3.6E-08 64.5 16.3 103 184-297 356-458 (872)
195 PF04733 Coatomer_E: Coatomer 97.7 0.00019 4.1E-09 66.7 9.2 92 197-305 182-274 (290)
196 PRK10941 hypothetical protein; 97.7 0.00043 9.3E-09 63.3 11.1 80 231-310 179-258 (269)
197 KOG4507 Uncharacterized conser 97.7 0.00013 2.8E-09 71.4 7.9 108 189-312 614-721 (886)
198 KOG1130 Predicted G-alpha GTPa 97.6 7.8E-05 1.7E-09 70.2 5.7 110 178-298 191-306 (639)
199 PF13181 TPR_8: Tetratricopept 97.6 8.7E-05 1.9E-09 44.9 4.1 33 268-300 2-34 (34)
200 KOG1586 Protein required for f 97.6 0.0076 1.7E-07 53.1 17.1 152 184-357 115-277 (288)
201 KOG0495 HAT repeat protein [RN 97.6 0.00079 1.7E-08 66.9 12.2 148 185-333 587-750 (913)
202 KOG1127 TPR repeat-containing 97.6 0.00023 4.9E-09 73.6 8.6 111 184-311 564-674 (1238)
203 KOG3785 Uncharacterized conser 97.6 0.00043 9.4E-09 64.1 9.0 99 190-308 30-128 (557)
204 KOG0495 HAT repeat protein [RN 97.5 0.0014 3.1E-08 65.2 12.7 126 186-328 655-780 (913)
205 KOG4642 Chaperone-dependent E3 97.5 0.0004 8.7E-09 61.1 7.2 85 239-323 16-100 (284)
206 PF13512 TPR_18: Tetratricopep 97.4 0.00074 1.6E-08 55.2 8.1 70 235-304 12-84 (142)
207 PF13431 TPR_17: Tetratricopep 97.4 0.00012 2.7E-09 44.5 2.5 33 204-253 1-33 (34)
208 KOG1130 Predicted G-alpha GTPa 97.4 0.00068 1.5E-08 64.0 8.6 103 183-296 236-344 (639)
209 KOG2376 Signal recognition par 97.4 0.0033 7.1E-08 62.0 13.4 118 184-301 112-258 (652)
210 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00051 1.1E-08 46.3 5.4 41 235-275 3-43 (53)
211 COG2976 Uncharacterized protei 97.3 0.0047 1E-07 52.9 11.7 100 184-300 91-192 (207)
212 PF13181 TPR_8: Tetratricopept 97.3 0.00025 5.5E-09 42.8 3.1 32 235-266 3-34 (34)
213 COG3118 Thioredoxin domain-con 97.3 0.012 2.5E-07 53.8 14.8 111 185-312 137-283 (304)
214 KOG3785 Uncharacterized conser 97.2 0.0026 5.7E-08 59.1 9.8 137 186-340 61-223 (557)
215 KOG2376 Signal recognition par 97.2 0.0072 1.6E-07 59.6 13.1 117 183-302 13-145 (652)
216 KOG0549 FKBP-type peptidyl-pro 97.2 0.00038 8.1E-09 58.5 3.7 40 100-140 1-40 (188)
217 KOG1941 Acetylcholine receptor 97.2 0.0026 5.5E-08 59.3 9.2 139 181-319 5-180 (518)
218 KOG3364 Membrane protein invol 97.2 0.0031 6.7E-08 50.7 8.5 80 233-312 32-116 (149)
219 COG0457 NrfG FOG: TPR repeat [ 97.1 0.017 3.7E-07 49.0 14.1 133 183-333 96-233 (291)
220 PF06552 TOM20_plant: Plant sp 97.1 0.0024 5.1E-08 54.1 7.9 89 249-337 7-115 (186)
221 KOG3081 Vesicle coat complex C 97.1 0.0093 2E-07 53.5 11.8 133 187-319 113-259 (299)
222 PF13174 TPR_6: Tetratricopept 97.1 0.001 2.2E-08 39.7 3.9 31 269-299 2-32 (33)
223 COG3071 HemY Uncharacterized e 97.1 0.023 5.1E-07 53.6 14.6 128 175-319 77-205 (400)
224 KOG2053 Mitochondrial inherita 97.0 0.033 7.1E-07 57.6 16.6 114 191-322 18-131 (932)
225 COG0457 NrfG FOG: TPR repeat [ 97.0 0.017 3.7E-07 49.0 12.6 129 191-334 139-268 (291)
226 KOG0376 Serine-threonine phosp 97.0 0.0016 3.4E-08 62.8 6.3 115 236-355 7-121 (476)
227 KOG2796 Uncharacterized conser 96.9 0.0078 1.7E-07 53.9 9.6 117 184-300 179-319 (366)
228 PF13174 TPR_6: Tetratricopept 96.9 0.0011 2.4E-08 39.5 3.1 32 235-266 2-33 (33)
229 smart00028 TPR Tetratricopepti 96.8 0.0019 4.1E-08 37.2 3.6 29 236-264 4-32 (34)
230 smart00028 TPR Tetratricopepti 96.8 0.0022 4.9E-08 36.9 3.9 33 268-300 2-34 (34)
231 KOG0551 Hsp90 co-chaperone CNS 96.8 0.019 4.1E-07 53.1 11.3 68 182-266 119-186 (390)
232 PF13176 TPR_7: Tetratricopept 96.8 0.0016 3.4E-08 40.1 3.0 24 236-259 2-25 (36)
233 KOG0545 Aryl-hydrocarbon recep 96.7 0.017 3.7E-07 51.2 10.2 104 233-337 178-299 (329)
234 PF13176 TPR_7: Tetratricopept 96.7 0.0031 6.7E-08 38.8 4.1 29 269-297 1-29 (36)
235 COG4105 ComL DNA uptake lipopr 96.7 0.07 1.5E-06 47.9 14.1 127 235-361 36-181 (254)
236 PF08631 SPO22: Meiosis protei 96.7 0.072 1.6E-06 49.2 14.7 124 172-298 25-152 (278)
237 KOG3824 Huntingtin interacting 96.7 0.0079 1.7E-07 55.0 7.8 73 236-308 119-191 (472)
238 PF10300 DUF3808: Protein of u 96.6 0.012 2.6E-07 58.5 9.8 101 184-298 269-378 (468)
239 KOG4340 Uncharacterized conser 96.6 0.035 7.5E-07 50.8 11.4 86 192-294 20-105 (459)
240 KOG1941 Acetylcholine receptor 96.6 0.021 4.6E-07 53.4 10.2 126 187-323 127-268 (518)
241 KOG1308 Hsp70-interacting prot 96.5 0.00088 1.9E-08 61.9 1.1 108 243-352 124-231 (377)
242 KOG4507 Uncharacterized conser 96.5 0.011 2.5E-07 58.2 8.4 103 185-302 215-318 (886)
243 PF03704 BTAD: Bacterial trans 96.5 0.056 1.2E-06 44.5 11.5 106 237-342 10-143 (146)
244 COG2912 Uncharacterized conser 96.5 0.022 4.9E-07 51.5 9.5 77 230-306 178-254 (269)
245 KOG1915 Cell cycle control pro 96.5 0.15 3.2E-06 49.5 15.3 125 194-333 378-502 (677)
246 KOG2396 HAT (Half-A-TPR) repea 96.4 0.19 4.1E-06 49.1 16.0 115 198-329 87-202 (568)
247 PLN03081 pentatricopeptide (PP 96.3 0.027 5.9E-07 59.0 10.9 115 182-296 426-557 (697)
248 KOG2796 Uncharacterized conser 96.3 0.1 2.3E-06 46.9 12.7 105 233-338 212-322 (366)
249 COG3629 DnrI DNA-binding trans 96.3 0.063 1.4E-06 49.2 11.7 107 189-296 110-216 (280)
250 PF05843 Suf: Suppressor of fo 96.3 0.094 2E-06 48.5 13.0 109 189-314 8-120 (280)
251 KOG3824 Huntingtin interacting 96.3 0.012 2.7E-07 53.8 6.8 84 178-278 112-195 (472)
252 PF09986 DUF2225: Uncharacteri 96.3 0.093 2E-06 46.4 12.2 102 188-299 83-197 (214)
253 PF04184 ST7: ST7 protein; In 96.3 0.062 1.3E-06 52.5 11.7 139 172-310 181-339 (539)
254 KOG1586 Protein required for f 96.2 0.055 1.2E-06 47.8 10.1 104 191-305 82-192 (288)
255 COG4700 Uncharacterized protei 96.2 0.13 2.8E-06 44.1 11.8 107 194-318 68-177 (251)
256 PF14561 TPR_20: Tetratricopep 96.2 0.035 7.5E-07 41.9 7.7 65 252-316 7-73 (90)
257 COG4976 Predicted methyltransf 96.0 0.012 2.5E-07 51.8 4.8 62 241-302 3-64 (287)
258 PLN03077 Protein ECB2; Provisi 95.9 0.14 3E-06 55.1 14.0 130 184-335 556-690 (857)
259 PRK04841 transcriptional regul 95.9 0.13 2.8E-06 55.5 13.8 65 234-298 532-604 (903)
260 KOG2610 Uncharacterized conser 95.9 0.19 4.1E-06 46.9 12.5 112 183-294 104-236 (491)
261 KOG4340 Uncharacterized conser 95.9 0.068 1.5E-06 48.9 9.6 123 184-323 46-200 (459)
262 PLN03081 pentatricopeptide (PP 95.9 0.095 2.1E-06 54.9 12.2 146 181-329 390-555 (697)
263 PLN03218 maturation of RBCL 1; 95.9 0.21 4.6E-06 54.6 14.9 62 235-296 581-643 (1060)
264 PLN03218 maturation of RBCL 1; 95.8 0.18 3.8E-06 55.2 14.0 95 234-330 615-712 (1060)
265 PF10300 DUF3808: Protein of u 95.7 0.14 3.1E-06 50.9 12.2 96 195-307 246-345 (468)
266 KOG1915 Cell cycle control pro 95.7 0.43 9.3E-06 46.5 14.4 129 187-334 78-206 (677)
267 KOG3081 Vesicle coat complex C 95.7 0.18 3.9E-06 45.5 11.2 69 234-302 208-277 (299)
268 PLN03077 Protein ECB2; Provisi 95.6 0.16 3.5E-06 54.6 12.9 115 190-321 597-711 (857)
269 KOG1070 rRNA processing protei 95.6 0.2 4.3E-06 54.5 13.0 122 196-336 1511-1634(1710)
270 COG3071 HemY Uncharacterized e 95.6 0.11 2.3E-06 49.3 9.9 92 188-299 269-360 (400)
271 PRK04841 transcriptional regul 95.5 0.11 2.3E-06 56.1 11.3 97 188-296 458-560 (903)
272 PF10602 RPN7: 26S proteasome 95.5 0.23 4.9E-06 42.6 11.0 101 182-296 36-142 (177)
273 KOG1585 Protein required for f 95.2 0.22 4.8E-06 44.4 10.0 132 188-332 116-253 (308)
274 COG3947 Response regulator con 95.1 0.19 4.2E-06 45.9 9.7 73 222-294 268-340 (361)
275 PF13374 TPR_10: Tetratricopep 95.1 0.025 5.5E-07 35.3 3.1 28 235-262 4-31 (42)
276 PF10579 Rapsyn_N: Rapsyn N-te 95.1 0.13 2.8E-06 37.4 6.9 68 180-261 4-71 (80)
277 KOG0686 COP9 signalosome, subu 95.0 0.32 6.9E-06 46.4 11.2 138 184-335 152-308 (466)
278 KOG2471 TPR repeat-containing 95.0 0.063 1.4E-06 52.2 6.6 75 236-310 286-378 (696)
279 PF04781 DUF627: Protein of un 95.0 0.22 4.7E-06 38.9 8.4 102 188-296 2-107 (111)
280 KOG1070 rRNA processing protei 94.8 0.7 1.5E-05 50.5 14.3 115 233-348 1564-1680(1710)
281 PF05843 Suf: Suppressor of fo 94.8 0.4 8.7E-06 44.3 11.2 106 236-342 4-111 (280)
282 PF02259 FAT: FAT domain; Int 94.7 0.37 8.1E-06 45.5 11.4 114 186-299 188-341 (352)
283 KOG2471 TPR repeat-containing 94.7 0.037 8E-07 53.7 4.3 95 185-280 286-382 (696)
284 COG2976 Uncharacterized protei 94.7 1.1 2.3E-05 38.7 12.5 142 189-334 38-191 (207)
285 PF07079 DUF1347: Protein of u 94.6 0.45 9.8E-06 46.1 11.2 134 178-315 375-544 (549)
286 KOG3364 Membrane protein invol 94.5 0.21 4.5E-06 40.4 7.2 43 233-275 71-113 (149)
287 PF08631 SPO22: Meiosis protei 94.4 3 6.5E-05 38.4 16.3 109 192-310 3-131 (278)
288 KOG1585 Protein required for f 94.4 0.93 2E-05 40.6 11.8 126 187-323 36-172 (308)
289 KOG2053 Mitochondrial inherita 94.4 0.45 9.8E-06 49.6 11.2 89 245-334 21-109 (932)
290 COG4976 Predicted methyltransf 94.3 0.067 1.5E-06 47.1 4.6 61 190-267 3-63 (287)
291 PF04184 ST7: ST7 protein; In 94.3 0.51 1.1E-05 46.3 10.9 116 191-323 177-317 (539)
292 PRK10941 hypothetical protein; 94.3 0.35 7.6E-06 44.3 9.4 77 184-277 183-259 (269)
293 PF13374 TPR_10: Tetratricopep 93.9 0.15 3.2E-06 31.7 4.5 30 267-296 2-31 (42)
294 PF10516 SHNi-TPR: SHNi-TPR; 93.7 0.11 2.3E-06 32.4 3.4 29 268-296 2-30 (38)
295 PF14561 TPR_20: Tetratricopep 93.7 0.8 1.7E-05 34.5 8.9 65 201-282 7-73 (90)
296 KOG2300 Uncharacterized conser 93.5 1.4 3.1E-05 43.1 12.1 99 182-297 367-475 (629)
297 KOG4814 Uncharacterized conser 93.2 1.1 2.4E-05 45.2 11.2 80 234-313 355-440 (872)
298 PRK13184 pknD serine/threonine 93.0 0.81 1.8E-05 49.1 10.9 109 187-310 480-595 (932)
299 PF12862 Apc5: Anaphase-promot 93.0 0.37 8E-06 36.6 6.2 65 191-263 7-71 (94)
300 KOG2610 Uncharacterized conser 92.9 0.54 1.2E-05 43.9 8.1 91 194-301 187-283 (491)
301 PF10373 EST1_DNA_bind: Est1 D 92.9 1.2 2.6E-05 40.6 10.7 62 252-313 1-62 (278)
302 PF04910 Tcf25: Transcriptiona 92.0 3.1 6.8E-05 39.9 12.6 106 195-305 7-142 (360)
303 PF09613 HrpB1_HrpK: Bacterial 92.0 1.6 3.5E-05 36.5 9.2 78 236-313 13-90 (160)
304 PF07720 TPR_3: Tetratricopept 91.9 0.58 1.3E-05 28.7 4.9 33 268-300 2-36 (36)
305 PF12862 Apc5: Anaphase-promot 91.9 1.3 2.8E-05 33.5 8.0 58 242-299 7-73 (94)
306 PF02259 FAT: FAT domain; Int 91.8 3.4 7.3E-05 38.9 12.6 122 180-314 144-305 (352)
307 COG5191 Uncharacterized conser 91.3 0.42 9.2E-06 44.1 5.4 75 235-309 109-184 (435)
308 PF13281 DUF4071: Domain of un 91.2 3.5 7.7E-05 39.5 11.8 65 235-299 181-258 (374)
309 PF09613 HrpB1_HrpK: Bacterial 91.0 8.4 0.00018 32.3 14.3 112 182-312 10-121 (160)
310 PF09986 DUF2225: Uncharacteri 91.0 2.4 5.1E-05 37.5 9.8 88 178-276 121-209 (214)
311 PF12968 DUF3856: Domain of Un 90.9 0.66 1.4E-05 36.7 5.5 74 182-261 55-128 (144)
312 cd02682 MIT_AAA_Arch MIT: doma 90.9 1.3 2.8E-05 32.1 6.5 35 180-214 4-38 (75)
313 KOG1550 Extracellular protein 90.7 3.7 7.9E-05 41.9 12.2 90 187-297 293-394 (552)
314 TIGR03504 FimV_Cterm FimV C-te 90.5 1 2.3E-05 28.9 5.2 25 271-295 3-27 (44)
315 PF04212 MIT: MIT (microtubule 90.3 1.6 3.4E-05 30.9 6.7 36 179-214 2-37 (69)
316 COG3118 Thioredoxin domain-con 90.3 1.6 3.6E-05 40.1 8.3 55 238-292 139-193 (304)
317 PF10516 SHNi-TPR: SHNi-TPR; 90.3 0.44 9.4E-06 29.6 3.2 29 235-263 3-31 (38)
318 cd02681 MIT_calpain7_1 MIT: do 90.1 1.2 2.7E-05 32.3 5.9 35 180-214 4-38 (76)
319 PF10952 DUF2753: Protein of u 89.9 1.5 3.3E-05 34.9 6.7 118 184-310 3-125 (140)
320 KOG2300 Uncharacterized conser 89.4 3.1 6.7E-05 40.9 9.7 102 180-291 44-151 (629)
321 PF10602 RPN7: 26S proteasome 89.3 9.1 0.0002 32.7 11.8 74 234-307 37-115 (177)
322 PF11817 Foie-gras_1: Foie gra 88.9 1.4 2.9E-05 40.0 6.8 63 187-260 183-245 (247)
323 PF06957 COPI_C: Coatomer (COP 88.9 1.8 3.9E-05 42.2 7.8 126 178-305 200-338 (422)
324 PF13281 DUF4071: Domain of un 88.8 8 0.00017 37.2 12.1 117 233-354 141-273 (374)
325 COG4455 ImpE Protein of avirul 88.6 4.6 0.0001 35.7 9.3 72 241-312 9-80 (273)
326 PF10345 Cohesin_load: Cohesin 88.1 25 0.00053 36.4 16.2 110 182-291 301-428 (608)
327 PF07721 TPR_4: Tetratricopept 88.0 0.71 1.5E-05 25.8 2.8 22 269-290 3-24 (26)
328 KOG0530 Protein farnesyltransf 87.9 12 0.00027 34.0 11.8 106 192-314 53-160 (318)
329 KOG3617 WD40 and TPR repeat-co 87.9 12 0.00027 39.3 13.2 85 235-319 860-985 (1416)
330 cd02683 MIT_1 MIT: domain cont 87.7 2.8 6.1E-05 30.5 6.5 35 180-214 4-38 (77)
331 PF08424 NRDE-2: NRDE-2, neces 87.6 25 0.00055 33.1 16.5 62 249-310 47-108 (321)
332 COG3914 Spy Predicted O-linked 87.5 6.5 0.00014 39.5 10.8 99 195-310 80-185 (620)
333 COG3914 Spy Predicted O-linked 86.9 6.2 0.00013 39.7 10.2 95 201-310 50-145 (620)
334 PF07721 TPR_4: Tetratricopept 86.3 1 2.3E-05 25.1 2.9 23 235-257 3-25 (26)
335 PF10373 EST1_DNA_bind: Est1 D 86.2 3.6 7.9E-05 37.4 8.1 62 201-279 1-62 (278)
336 COG3898 Uncharacterized membra 86.2 9.8 0.00021 36.6 10.7 123 189-334 270-395 (531)
337 cd02684 MIT_2 MIT: domain cont 86.1 2.7 5.8E-05 30.4 5.7 36 179-214 3-38 (75)
338 PF10255 Paf67: RNA polymerase 85.9 1.3 2.8E-05 42.9 5.0 60 236-295 125-192 (404)
339 PF15015 NYD-SP12_N: Spermatog 85.6 8 0.00017 37.5 9.9 78 272-349 233-313 (569)
340 cd02679 MIT_spastin MIT: domai 85.4 3.7 8E-05 30.1 6.1 68 179-246 5-76 (79)
341 KOG2047 mRNA splicing factor [ 85.0 15 0.00033 37.5 11.9 153 180-333 423-581 (835)
342 COG2912 Uncharacterized conser 85.0 3.9 8.5E-05 37.2 7.3 72 188-276 187-258 (269)
343 KOG1550 Extracellular protein 84.8 14 0.00029 37.8 12.1 103 194-312 261-371 (552)
344 COG0790 FOG: TPR repeat, SEL1 84.7 23 0.00049 32.5 12.8 104 185-308 112-230 (292)
345 KOG2422 Uncharacterized conser 84.6 36 0.00079 34.4 14.2 88 175-267 284-377 (665)
346 PF08424 NRDE-2: NRDE-2, neces 84.2 8 0.00017 36.4 9.6 80 254-334 6-97 (321)
347 COG3898 Uncharacterized membra 84.0 17 0.00038 34.9 11.3 71 235-307 232-302 (531)
348 PF10345 Cohesin_load: Cohesin 83.6 28 0.00061 35.9 14.0 117 180-308 57-182 (608)
349 KOG0985 Vesicle coat protein c 83.5 11 0.00024 40.6 10.5 105 185-314 1197-1326(1666)
350 PF14863 Alkyl_sulf_dimr: Alky 83.3 7.4 0.00016 31.9 7.7 49 235-283 72-120 (141)
351 TIGR03504 FimV_Cterm FimV C-te 83.2 1.9 4.2E-05 27.7 3.4 27 236-262 2-28 (44)
352 PF04781 DUF627: Protein of un 83.2 20 0.00044 28.0 10.2 85 239-323 2-100 (111)
353 cd02677 MIT_SNX15 MIT: domain 83.0 6.6 0.00014 28.4 6.5 36 179-214 3-38 (75)
354 PF07720 TPR_3: Tetratricopept 82.9 2.4 5.2E-05 25.9 3.6 31 236-266 4-36 (36)
355 cd02680 MIT_calpain7_2 MIT: do 82.9 2.3 5.1E-05 30.8 4.1 35 180-214 4-38 (75)
356 TIGR02561 HrpB1_HrpK type III 82.6 11 0.00023 31.3 8.2 65 246-310 23-87 (153)
357 PF14863 Alkyl_sulf_dimr: Alky 81.7 2.9 6.3E-05 34.3 4.8 54 265-318 68-121 (141)
358 PF07163 Pex26: Pex26 protein; 81.4 38 0.00083 31.2 12.0 30 186-215 39-68 (309)
359 cd02678 MIT_VPS4 MIT: domain c 81.3 2.7 6E-05 30.3 4.1 35 179-213 3-37 (75)
360 KOG3617 WD40 and TPR repeat-co 81.2 13 0.00028 39.2 9.9 63 234-296 913-996 (1416)
361 KOG1839 Uncharacterized protei 80.6 22 0.00048 39.2 12.0 110 179-297 970-1087(1236)
362 KOG2047 mRNA splicing factor [ 80.5 75 0.0016 32.8 15.0 131 185-329 390-538 (835)
363 PRK13184 pknD serine/threonine 80.4 16 0.00034 39.6 10.8 73 236-310 555-634 (932)
364 PF10579 Rapsyn_N: Rapsyn N-te 80.4 11 0.00024 27.5 6.8 58 237-294 10-70 (80)
365 PF09670 Cas_Cas02710: CRISPR- 80.3 21 0.00045 34.6 10.9 101 181-296 130-270 (379)
366 KOG1497 COP9 signalosome, subu 79.9 37 0.0008 31.8 11.5 95 230-325 100-208 (399)
367 KOG2561 Adaptor protein NUB1, 79.2 67 0.0014 31.5 13.6 112 178-295 159-295 (568)
368 cd02677 MIT_SNX15 MIT: domain 78.5 17 0.00038 26.2 7.4 48 280-330 19-72 (75)
369 PF11817 Foie-gras_1: Foie gra 77.6 19 0.0004 32.5 9.2 84 199-293 155-244 (247)
370 KOG0529 Protein geranylgeranyl 77.5 49 0.0011 32.1 12.0 89 244-332 86-179 (421)
371 smart00745 MIT Microtubule Int 77.4 4.3 9.3E-05 29.3 4.1 36 179-214 5-40 (77)
372 PF10255 Paf67: RNA polymerase 77.3 10 0.00022 36.9 7.7 110 190-308 130-242 (404)
373 cd02656 MIT MIT: domain contai 77.2 4.4 9.5E-05 29.1 4.1 36 179-214 3-38 (75)
374 PRK15180 Vi polysaccharide bio 75.8 33 0.00071 34.0 10.4 98 189-303 296-393 (831)
375 PF04910 Tcf25: Transcriptiona 75.7 23 0.00049 34.0 9.6 101 183-299 104-225 (360)
376 KOG1118 Lysophosphatidic acid 75.4 16 0.00035 33.7 7.9 107 256-362 95-241 (366)
377 KOG0292 Vesicle coat complex C 75.1 34 0.00073 36.4 10.9 127 178-306 987-1123(1202)
378 KOG2041 WD40 repeat protein [G 75.0 44 0.00095 34.7 11.4 30 263-292 848-877 (1189)
379 COG0790 FOG: TPR repeat, SEL1 74.3 46 0.001 30.4 11.2 79 199-299 172-269 (292)
380 KOG2581 26S proteasome regulat 74.0 12 0.00027 36.0 7.0 67 235-301 211-281 (493)
381 cd02682 MIT_AAA_Arch MIT: doma 73.8 23 0.00049 25.7 6.9 22 236-257 9-30 (75)
382 PF11846 DUF3366: Domain of un 73.4 19 0.00041 31.0 7.8 51 249-300 127-177 (193)
383 PHA02537 M terminase endonucle 73.0 11 0.00025 33.6 6.3 117 193-316 94-226 (230)
384 KOG0530 Protein farnesyltransf 72.4 32 0.00069 31.4 8.9 103 248-354 58-161 (318)
385 COG3947 Response regulator con 72.4 16 0.00035 33.8 7.1 50 267-316 279-328 (361)
386 COG4941 Predicted RNA polymera 71.3 51 0.0011 31.2 10.2 76 235-310 331-408 (415)
387 COG3629 DnrI DNA-binding trans 71.0 14 0.0003 34.1 6.5 55 265-319 151-205 (280)
388 KOG1464 COP9 signalosome, subu 70.7 13 0.00028 34.0 6.1 51 245-295 39-93 (440)
389 KOG0529 Protein geranylgeranyl 70.3 64 0.0014 31.3 10.9 105 191-312 84-194 (421)
390 KOG1310 WD40 repeat protein [G 69.2 22 0.00048 35.6 7.7 77 246-322 387-466 (758)
391 KOG1839 Uncharacterized protei 68.7 25 0.00054 38.9 8.7 106 181-296 931-1044(1236)
392 PF09205 DUF1955: Domain of un 68.2 45 0.00098 27.2 8.0 38 259-296 112-149 (161)
393 PF15469 Sec5: Exocyst complex 67.5 38 0.00082 28.8 8.3 25 190-214 94-118 (182)
394 smart00386 HAT HAT (Half-A-TPR 67.0 18 0.00038 20.3 4.4 28 281-308 1-28 (33)
395 KOG0739 AAA+-type ATPase [Post 66.7 21 0.00046 33.3 6.7 37 178-214 6-42 (439)
396 COG4649 Uncharacterized protei 66.6 84 0.0018 27.0 11.5 98 185-295 97-195 (221)
397 PRK15180 Vi polysaccharide bio 66.5 15 0.00033 36.2 6.0 62 238-299 362-423 (831)
398 PF11207 DUF2989: Protein of u 65.9 22 0.00047 31.0 6.4 51 266-317 140-194 (203)
399 COG2909 MalT ATP-dependent tra 65.7 74 0.0016 34.0 11.1 95 187-293 463-565 (894)
400 KOG2396 HAT (Half-A-TPR) repea 65.6 98 0.0021 30.9 11.3 89 249-337 87-175 (568)
401 PF11207 DUF2989: Protein of u 65.5 11 0.00025 32.7 4.6 56 185-254 144-199 (203)
402 KOG0546 HSP90 co-chaperone CPR 63.6 5.3 0.00012 37.7 2.3 51 233-283 309-359 (372)
403 COG5159 RPN6 26S proteasome re 63.5 69 0.0015 29.7 9.2 100 187-295 8-153 (421)
404 COG5091 SGT1 Suppressor of G2 63.4 24 0.00053 32.1 6.3 104 190-300 3-112 (368)
405 KOG1463 26S proteasome regulat 63.3 62 0.0014 30.7 9.1 113 186-312 213-329 (411)
406 KOG2422 Uncharacterized conser 62.6 1E+02 0.0023 31.3 11.0 116 186-306 239-382 (665)
407 COG1747 Uncharacterized N-term 60.5 1.8E+02 0.004 29.3 12.1 55 246-300 218-292 (711)
408 COG1747 Uncharacterized N-term 59.7 86 0.0019 31.5 9.7 91 235-329 68-158 (711)
409 PF12652 CotJB: CotJB protein; 59.1 59 0.0013 23.7 6.7 55 275-333 3-57 (78)
410 TIGR02561 HrpB1_HrpK type III 57.9 1.1E+02 0.0024 25.4 13.3 80 187-283 15-94 (153)
411 smart00745 MIT Microtubule Int 57.7 52 0.0011 23.4 6.4 14 286-299 34-47 (77)
412 PF01239 PPTA: Protein prenylt 57.3 27 0.00058 20.1 3.9 28 252-279 2-29 (31)
413 COG2909 MalT ATP-dependent tra 57.3 2.8E+02 0.006 29.9 15.6 105 185-297 418-527 (894)
414 PF04053 Coatomer_WDAD: Coatom 57.0 38 0.00083 33.5 7.2 91 182-287 307-409 (443)
415 PF10475 DUF2450: Protein of u 56.3 1.2E+02 0.0027 27.9 10.2 96 181-294 126-224 (291)
416 cd02681 MIT_calpain7_1 MIT: do 55.9 65 0.0014 23.3 6.4 25 271-295 10-34 (76)
417 PF08238 Sel1: Sel1 repeat; I 55.6 28 0.00061 20.7 4.1 30 267-296 1-37 (39)
418 PF12854 PPR_1: PPR repeat 54.7 37 0.0008 20.0 4.3 27 266-292 6-32 (34)
419 KOG3783 Uncharacterized conser 54.6 50 0.0011 33.1 7.4 70 187-272 272-341 (546)
420 PF08311 Mad3_BUB1_I: Mad3/BUB 53.9 1.1E+02 0.0024 24.3 10.8 81 200-294 44-126 (126)
421 smart00671 SEL1 Sel1-like repe 53.6 28 0.00062 20.2 3.8 28 268-295 2-33 (36)
422 KOG3783 Uncharacterized conser 53.6 1.1E+02 0.0024 30.8 9.5 65 236-300 452-524 (546)
423 TIGR02710 CRISPR-associated pr 53.5 1.7E+02 0.0037 28.3 10.6 63 183-257 131-195 (380)
424 PF12739 TRAPPC-Trs85: ER-Golg 53.4 1.4E+02 0.003 29.2 10.5 102 184-296 210-329 (414)
425 PF07079 DUF1347: Protein of u 53.1 1.3E+02 0.0029 29.8 9.7 100 185-296 9-108 (549)
426 COG4455 ImpE Protein of avirul 52.4 1.4E+02 0.003 26.7 8.9 103 189-308 8-128 (273)
427 PF01535 PPR: PPR repeat; Int 51.9 23 0.00051 19.6 3.1 26 236-261 3-28 (31)
428 KOG1914 mRNA cleavage and poly 51.7 74 0.0016 32.1 8.0 48 248-295 34-81 (656)
429 KOG1258 mRNA processing protei 51.1 1.4E+02 0.003 30.5 9.8 117 236-353 300-416 (577)
430 PF09797 NatB_MDM20: N-acetylt 50.2 70 0.0015 30.6 7.7 46 246-291 196-241 (365)
431 COG5191 Uncharacterized conser 48.3 48 0.001 31.1 5.8 94 259-352 99-193 (435)
432 KOG3807 Predicted membrane pro 47.5 2.2E+02 0.0049 27.0 10.0 99 198-296 232-340 (556)
433 KOG0276 Vesicle coat complex C 47.2 95 0.0021 31.8 8.0 75 241-320 645-727 (794)
434 cd02679 MIT_spastin MIT: domai 46.9 42 0.0009 24.6 4.3 21 239-259 14-34 (79)
435 PF00244 14-3-3: 14-3-3 protei 46.6 40 0.00086 30.2 5.1 54 198-260 142-196 (236)
436 cd02656 MIT MIT: domain contai 44.8 75 0.0016 22.5 5.4 15 280-294 19-33 (75)
437 TIGR00756 PPR pentatricopeptid 44.5 47 0.001 18.6 3.7 26 236-261 3-28 (35)
438 PF04053 Coatomer_WDAD: Coatom 44.4 1.2E+02 0.0026 30.0 8.4 47 244-295 329-375 (443)
439 KOG2114 Vacuolar assembly/sort 44.0 94 0.002 33.0 7.7 33 182-214 368-400 (933)
440 PF10938 YfdX: YfdX protein; 43.4 1E+02 0.0022 25.7 6.7 72 180-261 73-145 (155)
441 KOG4563 Cell cycle-regulated h 43.2 34 0.00073 32.6 4.1 54 236-289 44-105 (400)
442 KOG0985 Vesicle coat protein c 42.7 2.5E+02 0.0055 31.0 10.5 103 187-296 1053-1162(1666)
443 KOG4459 Membrane-associated pr 42.7 1.8E+02 0.0039 28.7 8.9 124 185-311 34-177 (471)
444 PF13812 PPR_3: Pentatricopept 40.7 56 0.0012 18.4 3.6 25 236-260 4-28 (34)
445 PF08969 USP8_dimer: USP8 dime 40.5 78 0.0017 24.7 5.4 43 170-212 26-68 (115)
446 PF02064 MAS20: MAS20 protein 40.1 73 0.0016 25.4 5.0 40 176-215 57-96 (121)
447 KOG1258 mRNA processing protei 39.4 4.4E+02 0.0095 27.0 13.6 156 182-337 297-476 (577)
448 cd02683 MIT_1 MIT: domain cont 39.3 1.5E+02 0.0032 21.5 7.5 14 285-298 31-44 (77)
449 PRK11619 lytic murein transgly 38.8 2E+02 0.0044 30.0 9.4 54 242-295 321-374 (644)
450 KOG3616 Selective LIM binding 38.6 2.7E+02 0.0058 29.6 9.7 46 246-292 745-790 (1636)
451 COG4649 Uncharacterized protei 38.6 75 0.0016 27.3 5.0 49 231-280 165-213 (221)
452 PF04212 MIT: MIT (microtubule 37.1 1.4E+02 0.0031 20.7 8.5 25 271-295 9-33 (69)
453 PF10952 DUF2753: Protein of u 36.4 2.3E+02 0.0049 22.8 8.1 79 236-314 4-106 (140)
454 KOG1914 mRNA cleavage and poly 36.4 1.7E+02 0.0037 29.6 7.9 95 239-335 59-170 (656)
455 KOG1464 COP9 signalosome, subu 36.3 3E+02 0.0065 25.5 8.8 105 187-296 150-260 (440)
456 KOG1463 26S proteasome regulat 36.2 3E+02 0.0064 26.3 8.9 126 228-353 123-261 (411)
457 PF13041 PPR_2: PPR repeat fam 35.8 1.2E+02 0.0025 19.3 6.1 27 269-295 5-31 (50)
458 KOG3677 RNA polymerase I-assoc 35.4 71 0.0015 31.1 5.0 74 237-310 276-352 (525)
459 KOG3807 Predicted membrane pro 34.6 4.1E+02 0.009 25.3 11.5 106 192-298 194-306 (556)
460 KOG0276 Vesicle coat complex C 34.4 4.7E+02 0.01 27.1 10.5 18 276-293 730-747 (794)
461 PF07219 HemY_N: HemY protein 34.4 2.1E+02 0.0046 21.9 7.3 47 236-282 62-108 (108)
462 KOG2041 WD40 repeat protein [G 33.3 99 0.0022 32.3 5.8 46 232-285 795-840 (1189)
463 COG3014 Uncharacterized protei 33.1 4.4E+02 0.0096 25.2 10.9 117 179-300 122-246 (449)
464 KOG2460 Signal recognition par 33.1 2.5E+02 0.0054 28.4 8.3 101 194-295 302-450 (593)
465 smart00101 14_3_3 14-3-3 homol 33.0 1.2E+02 0.0026 27.4 5.9 54 198-260 144-198 (244)
466 KOG3677 RNA polymerase I-assoc 32.8 87 0.0019 30.6 5.1 55 237-295 239-300 (525)
467 KOG0889 Histone acetyltransfer 32.7 4.3E+02 0.0094 33.2 11.4 107 229-338 2808-2922(3550)
468 KOG4563 Cell cycle-regulated h 32.7 1.4E+02 0.0031 28.6 6.4 68 177-253 36-103 (400)
469 PF02184 HAT: HAT (Half-A-TPR) 32.4 84 0.0018 18.7 3.2 17 283-299 3-19 (32)
470 PF02064 MAS20: MAS20 protein 32.1 1.3E+02 0.0028 24.0 5.3 27 273-299 69-95 (121)
471 cd09239 BRO1_HD-PTP_like Prote 32.0 4.6E+02 0.01 25.1 11.7 27 269-295 254-280 (361)
472 cd07642 BAR_ASAP2 The Bin/Amph 31.8 3.6E+02 0.0079 23.8 9.7 95 235-329 27-124 (215)
473 cd00280 TRFH Telomeric Repeat 31.7 93 0.002 26.9 4.6 36 275-311 119-154 (200)
474 PF04190 DUF410: Protein of un 31.0 4.1E+02 0.0088 24.1 10.8 28 264-291 87-114 (260)
475 cd02680 MIT_calpain7_2 MIT: do 30.6 71 0.0015 23.1 3.3 24 273-296 12-35 (75)
476 COG1278 CspC Cold shock protei 30.3 85 0.0019 22.2 3.5 42 60-105 12-55 (67)
477 PF07219 HemY_N: HemY protein 29.7 2E+02 0.0044 22.0 6.1 40 175-214 52-91 (108)
478 PF08626 TRAPPC9-Trs120: Trans 29.5 55 0.0012 36.8 3.8 37 178-214 238-274 (1185)
479 PF04010 DUF357: Protein of un 29.3 1.7E+02 0.0036 21.1 5.0 40 173-212 26-65 (75)
480 TIGR00985 3a0801s04tom mitocho 28.4 1.6E+02 0.0035 24.3 5.4 42 174-215 82-124 (148)
481 KOG0739 AAA+-type ATPase [Post 27.6 3.3E+02 0.0071 25.7 7.7 70 198-292 7-77 (439)
482 PF11846 DUF3366: Domain of un 27.4 1.9E+02 0.0042 24.6 6.2 31 234-264 145-175 (193)
483 KOG4151 Myosin assembly protei 27.1 71 0.0015 33.5 3.7 82 188-286 99-180 (748)
484 PF03745 DUF309: Domain of unk 25.1 2.3E+02 0.0051 19.4 5.4 58 187-255 4-61 (62)
485 PF03097 BRO1: BRO1-like domai 24.7 3.8E+02 0.0082 25.6 8.3 27 269-295 241-267 (377)
486 KOG3616 Selective LIM binding 24.5 4E+02 0.0087 28.3 8.3 36 178-213 721-756 (1636)
487 KOG0890 Protein kinase of the 24.2 1.4E+03 0.03 28.0 14.3 64 232-297 1669-1732(2382)
488 cd02678 MIT_VPS4 MIT: domain c 24.1 2.7E+02 0.0058 19.7 8.9 24 272-295 11-34 (75)
489 KOG2709 Uncharacterized conser 23.6 1.2E+02 0.0027 29.5 4.4 27 236-262 25-51 (560)
490 COG5600 Transcription-associat 23.6 2E+02 0.0042 27.8 5.6 61 238-299 182-252 (413)
491 PF12753 Nro1: Nuclear pore co 23.1 1E+02 0.0022 29.8 3.8 33 249-283 334-366 (404)
492 KOG0890 Protein kinase of the 23.0 6.9E+02 0.015 30.4 10.6 103 181-302 1669-1790(2382)
493 PF14689 SPOB_a: Sensor_kinase 22.7 2.6E+02 0.0056 19.1 5.3 26 236-261 26-51 (62)
494 COG2178 Predicted RNA-binding 22.5 5.2E+02 0.011 22.5 10.5 99 184-293 31-147 (204)
495 KOG1538 Uncharacterized conser 22.3 2.1E+02 0.0045 29.8 5.8 62 242-310 782-843 (1081)
496 KOG2997 F-box protein FBX9 [Ge 22.2 95 0.0021 29.2 3.2 38 177-214 14-51 (366)
497 PF09122 DUF1930: Domain of un 22.0 1.3E+02 0.0028 20.8 3.1 22 110-131 35-56 (68)
498 cd09034 BRO1_Alix_like Protein 21.9 6.6E+02 0.014 23.5 10.0 28 269-296 253-280 (345)
499 COG3014 Uncharacterized protei 21.7 7.2E+02 0.016 23.9 11.3 28 269-296 127-154 (449)
500 PF05957 DUF883: Bacterial pro 21.5 1.8E+02 0.0039 21.7 4.2 37 325-361 58-94 (94)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-55 Score=404.49 Aligned_cols=318 Identities=37% Similarity=0.508 Sum_probs=278.7
Q ss_pred CCCCCCCCCCCc--eeeeCCCeEEEEEecCCC-C-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhh
Q 017811 35 QDGDGPPKVDSE--VEVLHEKVTKQIIKEGHG-Q-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110 (365)
Q Consensus 35 ~~~~~~~~~~~~--~~~~~~gv~k~v~~~G~g-~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~ 110 (365)
....+|+..+.. +.+++++|.|+|+++|.| . .|..|..|+|||.|++.+ + +|+++. .+|.|.+|++..||.
T Consensus 65 ~pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~-~-~f~~~~---~~fe~~~Ge~~~vi~ 139 (397)
T KOG0543|consen 65 SPPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELED-G-VFDQRE---LRFEFGEGEDIDVIE 139 (397)
T ss_pred CCCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC-c-ceeccc---cceEEecCCccchhH
Confidence 333344444443 344499999999999999 3 999999999999999986 4 888763 348888888437999
Q ss_pred hHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCcccccCCCCCHHHHHHHHHHhhhhhh
Q 017811 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGN 190 (365)
Q Consensus 111 g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~ 190 (365)
||+.||++|++||++.|+|+|.|+||+.+.. ++.||||++|.|+|+|+++.... ...|.+..++++..|...++.||
T Consensus 140 Gle~al~~M~~GE~a~v~i~~~YayG~~~~~-~p~IPPnA~l~yEVeL~~f~~~~--~~s~~~~~~e~l~~A~~~ke~Gn 216 (397)
T KOG0543|consen 140 GLEIALRMMKVGEVALVTIDPKYAYGEEGGE-PPLIPPNATLLYEVELLDFELKE--DESWKMFAEERLEAADRKKERGN 216 (397)
T ss_pred HHHHHHHhcCccceEEEEeCcccccCCCCCC-CCCCCCCceEEEEEEEEeeecCc--ccccccchHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999954432 68999999999999999999333 24899999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHH
Q 017811 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL 270 (365)
Q Consensus 191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~ 270 (365)
.+|+.|+|..|+..|.+|+..++....++ .++......++..||+|+|.||+|+++|.+|+..|++||+++|+|+||+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~--~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFD--EEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCC--HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999998765543 4667788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc---chhHHHHHH
Q 017811 271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK---KNWLIIFWQ 347 (365)
Q Consensus 271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~---~~~~~~~~~ 347 (365)
||+|+|++.+++|+.|+.+|++|++++|+|++++.+|..|.++.++++.++|++|.+||.......++ ..++...|.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~s~~~~~~~~~ 374 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTKSEAALEDKPK 374 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999866555 777778888
Q ss_pred HHHHHHHHHHhhhcc
Q 017811 348 LLVSLVLGLFKRKRV 362 (365)
Q Consensus 348 ~~~~~~~~~~~~~~~ 362 (365)
|..+.....+...+-
T Consensus 375 ~~~~~~~~~~~~~~~ 389 (397)
T KOG0543|consen 375 EQEGLTKDKDGTARL 389 (397)
T ss_pred chhcchhhhcchhhh
Confidence 888777766655543
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=266.71 Aligned_cols=280 Identities=25% Similarity=0.358 Sum_probs=236.5
Q ss_pred CCCeEEEEEecCCCCCCC--CCCEEEEEEEEEEcCC-CeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEE
Q 017811 51 HEKVTKQIIKEGHGQKPS--KYSTCFLHYRAWAEST-RHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALL 127 (365)
Q Consensus 51 ~~gv~k~v~~~G~g~~p~--~g~~v~v~y~~~~~~~-g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~ 127 (365)
..||.|+|+..|.|..|. +|+.|++||.....++ ++++|+|+..++|.++++|..|+ .+-||.+|.+|.++|++.|
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFk-L~VwE~il~tM~v~EvaqF 87 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFK-LEVWEIILTTMRVHEVAQF 87 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccc-cHHHHHHHHHHhhhhHHHh
Confidence 469999999999999764 7999999999887653 57999999999999999999864 6899999999999999999
Q ss_pred Eeccc--------------cccCCCCCC------CCC---------------CCCCCCcEEEEEEEEeeecCccc-ccCC
Q 017811 128 HVGWE--------------LGYGKEGSF------SFP---------------NVSPMADLVYEVVLIGFDETKEG-KARS 171 (365)
Q Consensus 128 ~i~~~--------------~~yg~~g~~------~~~---------------~ip~~~~l~~~iel~~~~~~~~~-~~~~ 171 (365)
.|.-. .+-|..... +.. ....-++|+|.|+|+.+..+.++ .+.|
T Consensus 88 ~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~W 167 (329)
T KOG0545|consen 88 WCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETW 167 (329)
T ss_pred hhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccc
Confidence 88632 111211000 000 01123579999999999988775 5699
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh-hhhhhHHHHHHHhhchhhhHHHHHHHHhcCHH
Q 017811 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-QLFGKYRDMALAVKNPCHLNMAACLLKLKRYE 250 (365)
Q Consensus 172 ~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~ 250 (365)
.|+.+++++.+..++.+||.+|+.|+|.+|+..|..||..+..-..- ..-+.++..+..+...+++|.+.|++..++|.
T Consensus 168 qlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y 247 (329)
T KOG0545|consen 168 QLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY 247 (329)
T ss_pred cCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999887542111 11234556677788899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811 251 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KSIARELRLLAEHEKAVYKKQKEIYKGIF 329 (365)
Q Consensus 251 ~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-~~~~~~l~~l~~~~~~~~~~~k~~y~kmf 329 (365)
++++.|..+|..+|.|+||||+||+|+....+-++|..+|.++|+++|.- ..+.++|+.+..++.+.++..|..|++||
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~kmf 327 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKMF 327 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999985 55778999999999999999999999999
Q ss_pred CC
Q 017811 330 GP 331 (365)
Q Consensus 330 ~~ 331 (365)
+.
T Consensus 328 s~ 329 (329)
T KOG0545|consen 328 SQ 329 (329)
T ss_pred CC
Confidence 73
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=187.66 Aligned_cols=105 Identities=32% Similarity=0.535 Sum_probs=101.2
Q ss_pred CeEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEecc
Q 017811 53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW 131 (365)
Q Consensus 53 gv~k~v~~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~ 131 (365)
|+.+.+|+.|+|. .|..|++|++||++.+.| |+.||||.+++.||.|.+|.| +||.|||+++.+|.+||+++++|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~d-G~kfDSs~dr~kPfkf~IGkg-eVIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQD-GKKFDSSRDRGKPFKFKIGKG-EVIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecC-CcEeecccccCCCeeEEecCc-ceeechhhcchhccccccceeeecc
Confidence 7889999999996 999999999999999998 999999999999999999999 9999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811 132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161 (365)
Q Consensus 132 ~~~yg~~g~~~~~~ip~~~~l~~~iel~~~ 161 (365)
++|||..|. +..||||++|+|+|||+.+
T Consensus 80 d~aYG~~G~--p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGH--PGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCC--CCccCCCcEEEEEEEEEec
Confidence 999999996 5789999999999999976
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-30 Score=217.05 Aligned_cols=128 Identities=29% Similarity=0.455 Sum_probs=114.6
Q ss_pred cchhhccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcc
Q 017811 19 SEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPL 98 (365)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~ 98 (365)
.....+...|+..++... .+.++++||+|.+++.|.|..|..|++|+|||+|++.| |++||||+.+++|+
T Consensus 77 ~~~~~~~~~f~~~~~k~~---------~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg~p~ 146 (205)
T COG0545 77 AANAAEGKAFLEKNAKEK---------GVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRGQPA 146 (205)
T ss_pred HHhHHhHHHHHhhhcccC---------CceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC-CCccccccccCCCc
Confidence 334444555666665555 38999999999999999999999999999999999998 99999999999999
Q ss_pred eeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811 99 EMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161 (365)
Q Consensus 99 ~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~ 161 (365)
.|.|| +||+||+++|.+|++|++++++|||++|||..|. +..||||++|+|+|+|+++
T Consensus 147 ~f~l~---~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~--~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 147 EFPLG---GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV--PGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eeecC---CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC--CCCCCCCCeEEEEEEEEec
Confidence 99999 6999999999999999999999999999999996 3459999999999999986
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-24 Score=179.91 Aligned_cols=110 Identities=26% Similarity=0.459 Sum_probs=97.9
Q ss_pred CCeEEEEEecC--CCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEe
Q 017811 52 EKVTKQIIKEG--HGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHV 129 (365)
Q Consensus 52 ~gv~k~v~~~G--~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i 129 (365)
+++...+++.= -..+...||.+.+||++.++| |+.||||+.++.|++|+||.+ +||+|||.+|.+|++||++.++|
T Consensus 68 ~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leD-Gt~fdSS~~rg~P~~f~LG~g-qVIkG~Dqgl~gMCvGEkRkl~I 145 (188)
T KOG0549|consen 68 EELQIGVLKKPEECPEKAKKGDTLHVHYTGSLED-GTKFDSSYSRGAPFTFTLGTG-QVIKGWDQGLLGMCVGEKRKLII 145 (188)
T ss_pred CceeEEEEECCccccccccCCCEEEEEEEEEecC-CCEEeeeccCCCCEEEEeCCC-ceeccHhHHhhhhCcccceEEec
Confidence 45555565552 223667899999999999998 999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCc
Q 017811 130 GWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK 165 (365)
Q Consensus 130 ~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~ 165 (365)
||+++||+.|. ++.||++++|+|+|||+.+....
T Consensus 146 Pp~LgYG~~G~--~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 146 PPHLGYGERGA--PPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred CccccCccCCC--CCCCCCCeeEEEEEEEEEeecCC
Confidence 99999999998 46799999999999999998764
No 6
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=9.3e-25 Score=190.61 Aligned_cols=124 Identities=22% Similarity=0.409 Sum_probs=112.9
Q ss_pred hccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeec
Q 017811 23 TEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVL 102 (365)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~l 102 (365)
..+..|++.+.... .+.++++|++++|+++|+|..|..||.|+|||++++.+ |++||+|+.++.|++|.+
T Consensus 82 ~~~~~fl~~~~k~~---------gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~d-G~vfdss~~~g~P~~f~l 151 (206)
T PRK11570 82 AEGVKFLEENAKKE---------GVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLID-GTVFDSSVARGEPAEFPV 151 (206)
T ss_pred HHHHHHHHHhhhcC---------CcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECC-CCEEEeccCCCCCeEEEe
Confidence 34556766666655 48899999999999999999999999999999999987 999999998889999999
Q ss_pred CCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811 103 GKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161 (365)
Q Consensus 103 g~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~ 161 (365)
| ++|+||+++|.+|++|+++.|.|||+++||+.|. .+.|||+++|+|+|+|+++
T Consensus 152 ~---~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~--~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 152 N---GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA--GASIPPFSTLVFEVELLEI 205 (206)
T ss_pred e---chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC--CCCcCCCCeEEEEEEEEEE
Confidence 7 6899999999999999999999999999999987 4689999999999999987
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.8e-23 Score=179.02 Aligned_cols=109 Identities=27% Similarity=0.484 Sum_probs=102.7
Q ss_pred eeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcce-eecCCCCchhhhHHHHHhcCCcCcEEE
Q 017811 48 EVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLE-MVLGKEKKEMTGLAIGVSSMKAGEHAL 126 (365)
Q Consensus 48 ~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~-f~lg~~~~~i~g~e~~l~~Mk~GE~~~ 126 (365)
.++.+||++..++.|+|+.|..|+.|.|||.|++..+|++||+++. +.|+. |++|.+ +||+||+.+|.+|++|.+++
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g-~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSG-EVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCC-CCCchHHHhhhhhccCCeeE
Confidence 5789999999999999999999999999999999955999999964 57888 999999 99999999999999999999
Q ss_pred EEeccccccCCCCCCCCCCCCCCCcEEEEEEEEee
Q 017811 127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161 (365)
Q Consensus 127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~ 161 (365)
|+|||.+|||..+. +.||||++|+|+|+|+.+
T Consensus 194 viIPp~lgYg~~g~---~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VIIPPELGYGKKGV---PEIPPNSTLVFDVELLSV 225 (226)
T ss_pred EEeCccccccccCc---CcCCCCCcEEEEEEEEec
Confidence 99999999999996 799999999999999976
No 8
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=1.4e-22 Score=183.30 Aligned_cols=130 Identities=23% Similarity=0.426 Sum_probs=117.0
Q ss_pred hhhccccccCCCCCCCCCCCCCCCCceeeeCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCccee
Q 017811 21 IVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEM 100 (365)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~k~v~~~G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f 100 (365)
....+.+|+..+....+ +.++++||+|+|+++|+|..|..||.|+|||++++.+ |++||+++.++.|+.|
T Consensus 124 ~~~~~~~fl~~~~k~~g---------v~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f 193 (269)
T PRK10902 124 NEAKGKKYREKFAKEKG---------VKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSF 193 (269)
T ss_pred HHHHHHHHHHHhccCCC---------cEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCC-CCEeeccccCCCceEE
Confidence 34456678887777764 7889999999999999999999999999999999987 9999999988899999
Q ss_pred ecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeeecCcc
Q 017811 101 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166 (365)
Q Consensus 101 ~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~~~~~ 166 (365)
.++ ++|+||+++|.+|++|+++.|+||+.++||..|. +.||||++|+|+|+|+++.....
T Consensus 194 ~l~---~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~---~gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 194 RLD---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred ecC---CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC---CCCCCCCcEEEEEEEEEeccCcc
Confidence 997 6899999999999999999999999999999885 57999999999999999976543
No 9
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.89 E-value=3.1e-22 Score=170.65 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=102.1
Q ss_pred CceeeeCCCeEEEEEec--CCCCCCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcC
Q 017811 45 SEVEVLHEKVTKQIIKE--GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAG 122 (365)
Q Consensus 45 ~~~~~~~~gv~k~v~~~--G~g~~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~G 122 (365)
..+..+++|+.+.+++. |+|..|..||.|++||++++.+ |++|++++. ..|+.|.+|.+ ++++||+++|.+|++|
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d-G~v~~ss~~-~~P~~f~vg~~-~vi~Gl~e~L~~Mk~G 138 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD-GDVIYSEEE-LGPQTYKVDQQ-DLFSGLRDGLKLMKEG 138 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC-CCEEEeCCC-CCCEEEEeCCc-chhHHHHHHHcCCCCC
Confidence 34677889999999876 6666999999999999999998 899999876 45999999998 8999999999999999
Q ss_pred cEEEEEeccccccCCCCCCCCCCCCCCCcEEEEEEEEeee
Q 017811 123 EHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (365)
Q Consensus 123 E~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~~~ 162 (365)
|+++|.|||.+|||..|. ...||||++|+|+|+|+++.
T Consensus 139 e~~~~~iP~~~AYG~~g~--~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 139 ETATFLFPSHKAYGYYGD--QNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CEEEEEECHHHcCCCCCC--CCCcCcCCcEEEEEEEEEec
Confidence 999999999999999986 36799999999999999885
No 10
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=9.7e-22 Score=175.28 Aligned_cols=128 Identities=30% Similarity=0.393 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (365)
Q Consensus 174 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 253 (365)
+..+....|+.+|.+||.+++.++|.+|+..|.+||.++|.+.-+ |+|+|.+|.++|+|+.|+
T Consensus 73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy-----------------ycNRAAAy~~Lg~~~~AV 135 (304)
T KOG0553|consen 73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY-----------------YCNRAAAYSKLGEYEDAV 135 (304)
T ss_pred ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH-----------------HHHHHHHHHHhcchHHHH
Confidence 333678899999999999999999999999999999999998665 999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 017811 254 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY 318 (365)
Q Consensus 254 ~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~ 318 (365)
.+|..+|.+||.+.|+|-|+|.||..+|+|++|+..|++||+++|+|......|+.+...+++..
T Consensus 136 kDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 136 KDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999998876665543
No 11
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2.8e-20 Score=156.37 Aligned_cols=135 Identities=30% Similarity=0.360 Sum_probs=124.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHH
Q 017811 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 256 (365)
Q Consensus 177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 256 (365)
..+..+..+|..||.+|+.|+|.+|...|..||.+.|... ..+++-||.|+|.|+++++.|+.||.+|
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~------------~e~rsIly~Nraaa~iKl~k~e~aI~dc 157 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS------------TEERSILYSNRAAALIKLRKWESAIEDC 157 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc------------HHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence 4578899999999999999999999999999999999753 2456778999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 257 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
.++|+++|.+.||+.|||.+|..+..|++|+.+|++.++++|.+..++..+.++.....+.+++.|.
T Consensus 158 sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 158 SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877777766654
No 12
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.82 E-value=8.7e-20 Score=140.64 Aligned_cols=91 Identities=33% Similarity=0.557 Sum_probs=84.7
Q ss_pred CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (365)
Q Consensus 66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ 145 (365)
.|+.||.|+|||++++.+ |++|++++....|++|.+|.+ ++|+||+.+|.+|++||++.|.||+.++||+.+.. ...
T Consensus 4 ~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~~~~~~~~g~~-~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~-~~~ 80 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLED-GKVFDSSYQEGEPFEFRLGSG-QVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLE-PPK 80 (94)
T ss_dssp SBSTTSEEEEEEEEEETT-SEEEEETTTTTSEEEEETTSS-SSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBC-TTT
T ss_pred cCCCCCEEEEEEEEEECC-CcEEEEeeecCcceeeeeccC-ccccchhhhcccccCCCEeeeEeCChhhcCccccC-CCC
Confidence 589999999999999985 999999988889999999999 89999999999999999999999999999998863 245
Q ss_pred CCCCCcEEEEEEEE
Q 017811 146 VSPMADLVYEVVLI 159 (365)
Q Consensus 146 ip~~~~l~~~iel~ 159 (365)
||++++|+|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999986
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.9e-17 Score=152.43 Aligned_cols=260 Identities=18% Similarity=0.209 Sum_probs=174.6
Q ss_pred ecCCCC-CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCC
Q 017811 60 KEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE 138 (365)
Q Consensus 60 ~~G~g~-~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~ 138 (365)
++|.|+ .|..|+.|.+||++++.+ |+.||||.+ +.|+.|.+|.| ++|.||+.++.+|+. |+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~d-gt~fdss~d-~~~~~~~lg~g-~vi~~~~~gv~tm~~--------------g~~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLD-GTKFDSSRD-GDPFKFDLGKG-SVIKGWDLGVATMKK--------------GEA 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecC-CeecccccC-CCceeeecCCC-ccccccccccccccc--------------ccc
Confidence 478998 999999999999999998 999999988 89999999999 999999999999998 555
Q ss_pred CCCCCCCCCCCCcEEEEEEEE------eeecCcccc--cCCCCC-HHH----HHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 017811 139 GSFSFPNVSPMADLVYEVVLI------GFDETKEGK--ARSDMT-VEE----RIGAADRRKMDGNALFKEEKLEEAMQQY 205 (365)
Q Consensus 139 g~~~~~~ip~~~~l~~~iel~------~~~~~~~~~--~~~~~~-~~e----~~~~a~~~k~~G~~~~~~~~y~~A~~~y 205 (365)
+. +|.||++++|.|+++|+ .+.....++ .+..-. ..- .+..-......=+..|..|+=..-+.-.
T Consensus 64 ~~--pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~~~vi~Gl 141 (397)
T KOG0543|consen 64 GS--PPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDGVFDQRELRFEFGEGEDIDVIEGL 141 (397)
T ss_pred CC--CCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCcceeccccceEEecCCccchhHHH
Confidence 55 68899999999999974 222221110 000000 000 0000000000001122333311222223
Q ss_pred HHHHHhh----------ccchhhhh--------------------------hhhHHHHHHH---hhchhhhHHHHHHHHh
Q 017811 206 EMAIAYM----------GDDFMFQL--------------------------FGKYRDMALA---VKNPCHLNMAACLLKL 246 (365)
Q Consensus 206 ~~al~~~----------~~~~~~~~--------------------------~~~~~~~~~~---~~~~~~~nla~~~~kl 246 (365)
..|+... +..+.|+. .......... -.+...--.|..|++.
T Consensus 142 e~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~ 221 (397)
T KOG0543|consen 142 EIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKE 221 (397)
T ss_pred HHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhh
Confidence 3333222 11111110 0000011111 1122355678899999
Q ss_pred cCHHHHHHHHHHHHhCCC----C-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 247 KRYEEAIGQCSLVLGEDE----N-----------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 247 ~~~~~A~~~~~~aL~~~p----~-----------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
|+|..|..-|++|+..=. . -..++.+++.||+.+++|.+|+....++|.++|+|.-+....+.+.
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~ 301 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL 301 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 999999999999875421 1 1248999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCccccc
Q 017811 312 EHEKAVYKKQKEIYKGIFGPRPEPKQKK 339 (365)
Q Consensus 312 ~~~~~~~~~~k~~y~kmf~~~~~~~~~~ 339 (365)
..+.+++.+ +..|.+++...|.+....
T Consensus 302 l~~~e~~~A-~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 302 LALGEYDLA-RDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HhhccHHHH-HHHHHHHHHhCCCcHHHH
Confidence 888888755 556999999999986653
No 14
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.7e-18 Score=158.39 Aligned_cols=157 Identities=24% Similarity=0.250 Sum_probs=138.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHH
Q 017811 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 256 (365)
Q Consensus 177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 256 (365)
...+..+.++..||..|++|+|..|.++|+.||.+.|.+.. ..+.||.|+|.+..++|+..+|+.+|
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-------------~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-------------TNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-------------hhHHHHHHhHhhhcccCCchhhhhhh
Confidence 45677888999999999999999999999999999998633 35778999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811 257 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 336 (365)
Q Consensus 257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~ 336 (365)
+.|+.+||...|||.++|+|++.+++|++|..+|++|+++.-+ ..+++.+......+++ ..|+.|.++++.....+
T Consensus 311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk---SkRkd~ykilGi~~~as 386 (486)
T KOG0550|consen 311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK---SKRKDWYKILGISRNAS 386 (486)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH---hhhhhHHHHhhhhhhcc
Confidence 9999999999999999999999999999999999999999876 7788888766555554 56788999998888665
Q ss_pred cc---chhHHHHHHHHH
Q 017811 337 QK---KNWLIIFWQLLV 350 (365)
Q Consensus 337 ~~---~~~~~~~~~~~~ 350 (365)
.. .+|+++.+.|..
T Consensus 387 ~~eikkayrk~AL~~Hp 403 (486)
T KOG0550|consen 387 DDEIKKAYRKLALVHHP 403 (486)
T ss_pred cchhhhHHHHHHHHhCC
Confidence 44 899999988864
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.5e-17 Score=153.81 Aligned_cols=129 Identities=31% Similarity=0.428 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH
Q 017811 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY 249 (365)
Q Consensus 170 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~ 249 (365)
.-.++.+++.+.|..+|.+||.+|+.|+|++||++|+.||.+.|+.+-| |.|+|.||..+|+|
T Consensus 103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF-----------------YsNraAcY~~lgd~ 165 (606)
T KOG0547|consen 103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF-----------------YSNRAACYESLGDW 165 (606)
T ss_pred hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh-----------------hhhHHHHHHHHhhH
Confidence 4467788999999999999999999999999999999999999986555 99999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHH
Q 017811 250 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP-EDKSIARELRLLAEHEK 315 (365)
Q Consensus 250 ~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P-~n~~~~~~l~~l~~~~~ 315 (365)
.+.+++|+++|+++|+++|||+||+.|+..+|++++|+.+..-..-++. +|..+.-.+.++...+.
T Consensus 166 ~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 166 EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875444333 34444444554444333
No 16
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.1e-17 Score=153.57 Aligned_cols=117 Identities=30% Similarity=0.396 Sum_probs=110.9
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+...+..||.+|+.|+|..|+..|++||...|++.. +|.|+|.||.+++++..|+.+|+.++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~-----------------lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR-----------------LYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3667788999999999999999999999999998744 59999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
+++|+++++|+|.|.|+..+.+|++|+..|+++++++|++.++...+.+|...+
T Consensus 420 eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 420 ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999997765
No 17
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.69 E-value=8.7e-17 Score=145.36 Aligned_cols=123 Identities=29% Similarity=0.406 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHH
Q 017811 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252 (365)
Q Consensus 173 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A 252 (365)
.-.++.+..+..++++||.||++|+|++||.+|.+++...|.+... +.|+|.+|++++.|..|
T Consensus 88 ~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~-----------------~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 88 PIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY-----------------HINRALAYLKQKSFAQA 150 (536)
T ss_pred HHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc-----------------hhhHHHHHHHHHHHHHH
Confidence 3356778888899999999999999999999999999999987543 89999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 253 ~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
..+|+.|+.+|..++|||-|||.|...||+..+|.++++.+|.|+|++.+.++.+..+..
T Consensus 151 E~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 151 EEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999888888777744
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.63 E-value=4e-15 Score=142.01 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=110.6
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..++.+|+.+|..++|..|+.+|.+||.+.|.+.. +|+++|.||+++|+|++|+.+++++|.+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~-----------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE-----------------LYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999998744 4999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 017811 263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 317 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~ 317 (365)
+|.+..+|+++|.+|+.+|+|++|+..|++++.++|++..+...+..|..+++..
T Consensus 66 ~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 66 DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999997777543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=9e-15 Score=149.93 Aligned_cols=136 Identities=25% Similarity=0.274 Sum_probs=119.4
Q ss_pred CCCCCCCcEEEEEEEEeeecCcccccCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhh
Q 017811 144 PNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK 223 (365)
Q Consensus 144 ~~ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~ 223 (365)
+.+|++..+....++..+... ..|.++.+++...+..++..|+.+|+.|+|.+|+..|++||.+.|+. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~-~------ 161 (615)
T TIGR00990 93 STAPKNAPVEPADELPEIDES----SVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-V------ 161 (615)
T ss_pred CCCCCCCCCCccccccccchh----hcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-H------
Confidence 345666666666666555443 26899999999999999999999999999999999999999998852 1
Q ss_pred HHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811 224 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301 (365)
Q Consensus 224 ~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~ 301 (365)
.|+|+|.||+++|+|++|+.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 162 -----------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 162 -----------YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred -----------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 3899999999999999999999999999999999999999999999999999999999988877554
No 20
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.4e-15 Score=135.57 Aligned_cols=108 Identities=26% Similarity=0.292 Sum_probs=96.7
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
+.|..+++.||.||+.++|..|+..|+++|...-.+.. +.+.+|.|+|.|++.+|+|..|+.+|.+|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-------------lnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-------------LNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999998766643 45778999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
+.++|.+.||+||-|+|++.|.++++|..+....+.++-++
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999999999999999999888887777666665443
No 21
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.60 E-value=3.6e-15 Score=124.84 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=67.1
Q ss_pred CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCC
Q 017811 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 139 (365)
Q Consensus 66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g 139 (365)
.++.|+.|++||++++.+ |++||+|+..+.|+.|.+|.+ ++++||+.+|.+|++|+++.|.|||+.|||+..
T Consensus 4 ~i~~~~~V~v~Y~~~~~d-G~v~dst~~~~~P~~f~~G~g-~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDD-GSTAESTRNNGKPALFRLGDG-SLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCC-CCEEEECCCCCCCEEEEeCCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 457899999999999987 899999987789999999999 899999999999999999999999999999763
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=3.4e-14 Score=118.23 Aligned_cols=113 Identities=20% Similarity=0.226 Sum_probs=104.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
+...|..++..|+|.+|+..|.+++.+.|.+.. ++.++|.++..+|++++|+..|.+++.++|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR-----------------AHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456799999999999999999999999998755 499999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
+++.+++++|.++..+|++++|+..|.+++.+.|++......++.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887777665443
No 23
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4e-14 Score=135.01 Aligned_cols=113 Identities=23% Similarity=0.248 Sum_probs=107.4
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
+..+++.||..|..|+|+.|+.+|..||.+.|.+.. +|.|+..||.++|+|.+|+.+..+..+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv-----------------lySnrsaa~a~~~~~~~al~da~k~~~ 64 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV-----------------LYSNRSAAYASLGSYEKALKDATKTRR 64 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc-----------------hhcchHHHHHHHhhHHHHHHHHHHHHh
Confidence 456789999999999999999999999999998744 599999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
++|..+|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....|....
T Consensus 65 l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 65 LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999999999999999999999888776
No 24
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.2e-12 Score=107.32 Aligned_cols=116 Identities=21% Similarity=0.285 Sum_probs=105.2
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+......|..++..|+|.+|+..|++++...|.+.. ++.++|.|+.++|++++|+..+++++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR-----------------YWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999987644 48999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 313 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~ 313 (365)
.++|.++..++.+|.++..+|++++|+..|+++++++|++.........+...
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877666655443
No 25
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.2e-13 Score=119.64 Aligned_cols=115 Identities=27% Similarity=0.287 Sum_probs=102.4
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+.++++.||.+|..++|..|+.+|.+||.+.|....+ |.|+|.||+++++|+.+..+|.++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y-----------------~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY-----------------YTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh-----------------hhhHHHHHHHhhhhhhhhhhHHHH
Confidence 457899999999999999999999999999999987555 899999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHH
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP-----EDKSIARELRLLA 311 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P-----~n~~~~~~l~~l~ 311 (365)
|+++|+.+|++|.+|.+++....|++|+..|++|+.+.- .-.++...|..++
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999976632 1245666666553
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.47 E-value=3.3e-13 Score=122.38 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=138.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 255 (365)
Q Consensus 176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 255 (365)
-.++..+....+.+......++|.+++..+++.++..|..... +...+--+..||-.-+++.+||..
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-------------r~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-------------RYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-------------eeeeeheeeecccccCCHHHHHHH
Confidence 3456666667778888889999999999999999988874322 233455677899999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
|+.+|.++|+++.+|..||.||+.-..|+.|+.+|++|++++|+|..++..+...++.+++ ..|+.|+|+|+..++.
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq---s~kRDYYKILGVkRnA 406 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ---SGKRDYYKILGVKRNA 406 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH---hccchHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999977555544 6788899999999988
Q ss_pred ccc---chhHHHHHHHHHHHHH
Q 017811 336 KQK---KNWLIIFWQLLVSLVL 354 (365)
Q Consensus 336 ~~~---~~~~~~~~~~~~~~~~ 354 (365)
... ++|+++...|.=-.|.
T Consensus 407 sKqEI~KAYRKlAqkWHPDNFq 428 (504)
T KOG0624|consen 407 SKQEITKAYRKLAQKWHPDNFQ 428 (504)
T ss_pred cHHHHHHHHHHHHHhcCCcccc
Confidence 766 8999999999755443
No 27
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.46 E-value=1.5e-12 Score=107.54 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=96.7
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
..+.+...|..++..|+|++|...|+-...++|.+..+ ++|||.|+..+|+|.+|+..|..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y-----------------~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY-----------------WFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-----------------HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35678899999999999999999999999999998766 9999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
.++|+++.++++.|.|++.+|+.+.|.+.|+.|+...-.+
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987433
No 28
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.44 E-value=2.1e-13 Score=129.21 Aligned_cols=120 Identities=25% Similarity=0.315 Sum_probs=113.0
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.|+..+.+++.+|+.+.|+.|+..|.+||++.|++..+ +.|+|.++++.++|..|+.++.+|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~-----------------~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY-----------------FANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee-----------------echhhhhheeechhhhHHHHHHhhh
Confidence 46778999999999999999999999999999987443 8999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 317 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~ 317 (365)
+++|.+.|+|+|+|.+.+.+++|.+|+.+|++...+.|+++.+.+.+..|.....++
T Consensus 66 e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 66 ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998777663
No 29
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.1e-13 Score=110.54 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=66.5
Q ss_pred CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCC
Q 017811 67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 139 (365)
Q Consensus 67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g 139 (365)
...|+.|+++|++++.+ |++||+|.....|+.|.+|.| ++|+|||.||.+|.+|++..|.|||+.|||...
T Consensus 3 i~k~~~V~i~Y~~~~~d-g~v~Dtt~e~~~P~~~i~G~g-~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 3 IEKGDVVSLHYTLKVED-GEVVDTTDENYGPLTFIVGAG-QLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred ccCCCEEEEEEEEEecC-CcEEEcccccCCCeEEEecCC-CcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 46799999999999998 999999977578999999999 999999999999999999999999999999864
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.40 E-value=5e-12 Score=129.72 Aligned_cols=155 Identities=14% Similarity=0.052 Sum_probs=116.6
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh--------hhhhHHHHH------HH---hhchhhhHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMA------LA---VKNPCHLNMAACL 243 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~------~~---~~~~~~~nla~~~ 243 (365)
.+..+...|..++..|++++|+..|++++.+.|.....- ..+...+.. .. -...+++++|.++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445577889999999999999999999999998754210 001111111 11 1135788888888
Q ss_pred HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
+.+|+|++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++.+.|++..+...++.+....++..++ ..
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A-~~ 488 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA-IE 488 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH-HH
Confidence 88888888888888888888888888888888888888888888888888888888888888888887777766544 44
Q ss_pred HHhcccCCCCCcc
Q 017811 324 IYKGIFGPRPEPK 336 (365)
Q Consensus 324 ~y~kmf~~~~~~~ 336 (365)
.|.+.+...|...
T Consensus 489 ~~~~Al~l~p~~~ 501 (615)
T TIGR00990 489 KFDTAIELEKETK 501 (615)
T ss_pred HHHHHHhcCCccc
Confidence 5888777766543
No 31
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.40 E-value=1.2e-12 Score=126.47 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=103.2
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+..+.+.||.|-..+.|++|+.+|.+|+.+.|... .++.|+|.+|...|..+-||..|+++|
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-----------------~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-----------------VAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-----------------hhccceEEEEeccccHHHHHHHHHHHH
Confidence 345677888888888888888888888888887643 347777777777777777777777777
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
+++|+.+.||.++|.|+..+|+..+|..+|++||.+.|+.+++...|+.++..+..-..+ ...|.+.|...|.....
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A-~~ly~~al~v~p~~aaa 390 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA-TRLYLKALEVFPEFAAA 390 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH-HHHHHHHHhhChhhhhh
Confidence 777777777777777777777777777777777777777777777777776665555443 34477777766654433
No 32
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.39 E-value=1.3e-12 Score=112.45 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=64.7
Q ss_pred CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCC
Q 017811 67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 139 (365)
Q Consensus 67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g 139 (365)
...++.|+|+|++++.+ |++||+|.. ..|+.|.+|.+ +++|||+.+|.+|.+|++..|+|+|+.|||+..
T Consensus 3 I~~~~vV~l~Y~l~~~d-G~v~dst~~-~~Pl~~~~G~g-~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 3 VAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred cCCCCEEEEEEEEEeCC-CCEEEecCC-CCCeEEEeCCC-cchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 46789999999999987 999999964 67999999999 999999999999999999999999999999864
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=1e-11 Score=115.93 Aligned_cols=106 Identities=20% Similarity=0.093 Sum_probs=99.9
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+..+..+|..+...|++.+|+..|++|+.+.|++.. +|+++|.++..+|+|++|+..++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD-----------------AYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34667889999999999999999999999999998644 4999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~ 302 (365)
++++|++..+++++|.++...|++++|+.+|++++.++|+++.
T Consensus 125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999874
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=1.1e-11 Score=103.18 Aligned_cols=118 Identities=6% Similarity=-0.080 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 017811 202 MQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG 281 (365)
Q Consensus 202 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~ 281 (365)
...|++|+++.|.+ +.++|.++...|++++|+.+|..++.++|.+..+++.+|.++..+|
T Consensus 13 ~~~~~~al~~~p~~--------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 13 EDILKQLLSVDPET--------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHcCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 46788899988763 5689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccch
Q 017811 282 QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 340 (365)
Q Consensus 282 ~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~ 340 (365)
++++|+..|.+++.++|++..+...++.+....++..++... |.+.+...|+....-.
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~-~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA-FQTAIKMSYADASWSE 130 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHH
Confidence 999999999999999999999999999998888877765554 8888888776655533
No 35
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.36 E-value=6.2e-12 Score=121.73 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=95.0
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
..+++|||.+|...|++++|+.+|+.||.++|..+.||.++|..|..+|+.+.|+.+|.+|+.++|...++...|+.+++
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 313 HEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 313 ~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
-.+.-.++... |+-.+..+|+-...
T Consensus 468 DsGni~~AI~s-Y~~aLklkPDfpdA 492 (966)
T KOG4626|consen 468 DSGNIPEAIQS-YRTALKLKPDFPDA 492 (966)
T ss_pred ccCCcHHHHHH-HHHHHccCCCCchh
Confidence 66665555444 99999999887765
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=2.2e-11 Score=105.35 Aligned_cols=173 Identities=19% Similarity=0.116 Sum_probs=111.3
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhH---HHHH------HHhhchhhhHHHH
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKY---RDMA------LAVKNPCHLNMAA 241 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~---~~~~------~~~~~~~~~nla~ 241 (365)
-..+......|..|+..|++..|....++||+++|..+..-. .++. .+.. ..-...+++|.|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 345677788899999999999999999999999988654310 0000 0000 0001234555555
Q ss_pred HHHHhcCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811 242 CLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 319 (365)
Q Consensus 242 ~~~kl~~~~~A~~~~~~aL~~--~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~ 319 (365)
-+...|+|++|...|++|+.. .|.-..++-++|.|.+..|+++.|..+|+++|+++|+++....++...+-..+++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~- 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA- 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch-
Confidence 555555555555555555541 23345577778888888888888888888888888888888877777655555543
Q ss_pred HHHHHHhcccCCCCCccccchhHHHHHHHHHHHH
Q 017811 320 KQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLV 353 (365)
Q Consensus 320 ~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~ 353 (365)
....|...+...-..+....|+++.+...+|--
T Consensus 191 -~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 191 -PARLYLERYQQRGGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred -HHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence 333344444444446666889999888887743
No 37
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2e-12 Score=118.07 Aligned_cols=156 Identities=28% Similarity=0.349 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchh-hhhhhhH-HHHHHHhhchhhhHHHHHHHHhcCHHHH
Q 017811 175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-FQLFGKY-RDMALAVKNPCHLNMAACLLKLKRYEEA 252 (365)
Q Consensus 175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~nla~~~~kl~~~~~A 252 (365)
....+..++..++.|+..|++++|..|...|.++++....... ......+ ......++..++.|++.|-++++.+..|
T Consensus 215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a 294 (372)
T KOG0546|consen 215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA 294 (372)
T ss_pred cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence 3456777888999999999999999999999999998863110 0001111 2335566778899999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811 253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 330 (365)
Q Consensus 253 ~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~ 330 (365)
+..+..+++.++...+||||++++++.+.++++|+.+++.+....|++..+...+.......+++..++++.+.+||+
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984
No 38
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.33 E-value=2.9e-11 Score=106.00 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=86.9
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHH-HHhcC--HHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL-LKLKR--YEEAIGQC 256 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~kl~~--~~~A~~~~ 256 (365)
+.+..+...|..+...|+|+.|+..|.+|+.+.|++.. +++++|.++ ...|+ +++|+..+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~-----------------~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE-----------------LYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 34456777888888888888888888888888887644 378888874 56676 48888888
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811 257 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308 (365)
Q Consensus 257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~ 308 (365)
+++++++|+++.+++.+|.++..+|+|++|+..++++++++|.+..-...+.
T Consensus 134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 8888888888888888888888888888888888888888887654444443
No 39
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.29 E-value=5.5e-11 Score=94.65 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=98.8
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..+...|..+++.|+|.+|+..|.+++...|++.. ...+++++|.++++.++++.|+..+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY--------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 45678899999999999999999999998886422 1235889999999999999999999999999
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811 263 DENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308 (365)
Q Consensus 263 ~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~ 308 (365)
+|++ ..+++.+|.++..++++++|+..|.+++...|++..+...+.
T Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 69 YPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred CCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 9886 678999999999999999999999999999999987665543
No 40
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.28 E-value=8.7e-12 Score=89.87 Aligned_cols=65 Identities=34% Similarity=0.431 Sum_probs=63.0
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAP 298 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~-~~~~A~~~l~~al~l~P 298 (365)
.++.++|.+++.+++|++|+.+|+++|+++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 358999999999999999999999999999999999999999999999 79999999999999998
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.26 E-value=9.6e-11 Score=102.69 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=114.5
Q ss_pred hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 017811 194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR 273 (365)
Q Consensus 194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~ 273 (365)
..++..+++..|++++...|++.. .+.++|.+|+.+|+++.|+..|++++.++|++..+++.+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~-----------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l 113 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSE-----------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL 113 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 467789999999999999999754 499999999999999999999999999999999999999
Q ss_pred HHHH-HHcCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 274 GKAR-AELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 274 g~a~-~~l~~--~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
|.++ ...|+ +++|...|.++++++|++..++..++.+....+++.++... |++++...+..+++
T Consensus 114 A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~-~~~aL~l~~~~~~r 180 (198)
T PRK10370 114 ATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL-WQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCccH
Confidence 9986 67787 59999999999999999999999999998888888766655 99999888876665
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.7e-10 Score=108.61 Aligned_cols=129 Identities=17% Similarity=0.081 Sum_probs=114.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
-.||-|--+++++.|+..|++|++++|.- ..++.-+|.=|+.+++-..|+..|+.|++++|.+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~-----------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKY-----------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcch-----------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence 37888889999999999999999999984 3458889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811 267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 333 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~ 333 (365)
-+|||-+|++|.-++...-|+-+|++|+.+-|+|..++..|+.|+.++....++.+. |++......
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC-ykrai~~~d 463 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC-YKRAILLGD 463 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH-HHHHHhccc
Confidence 999999999999999999999999999999999999999999999888888777766 766654443
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=1e-10 Score=106.40 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=104.4
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+..+.+.|+.++..|+|..|+..|..|++.+|+++. +++.+|.+|+.+|+-..|+.++.++
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~-----------------aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ-----------------AIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH-----------------HHHHHHHHHhhhcCCccchhhHHHH
Confidence 45778999999999999999999999999999998755 4899999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHH
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIARELRLLAE 312 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~---~~~~~l~~l~~ 312 (365)
|++.|+..-|...||.+++.+|+++.|..+|..+|..+|++. +++..+..+.+
T Consensus 99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999764 44544544433
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=4.9e-11 Score=116.65 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=79.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
-+.|...||.+--+++++.||++|++||.++|.... +|.-+|.=+....+|+.|..+|+.||.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-----------------ayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-----------------AYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-----------------hhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 456889999999999999999999999999996422 244444444445555555555555555
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
.+|.+-.|||-+|.+|+.+++++.|.-.|++|+.++|.|..+.-.++....++++.+++ -.+|.+.+-.++.+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A-L~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA-LQLYEKAIHLDPKN 556 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH-HHHHHHHHhcCCCC
Confidence 55555555555555555555555555555555555555555555555444444433322 23344444444433
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=2.5e-10 Score=115.62 Aligned_cols=120 Identities=8% Similarity=-0.075 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG 274 (365)
Q Consensus 195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g 274 (365)
.+++.+|+..+++|+++.|.+.. ++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 379 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQ-----------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG 379 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35589999999999999998754 4889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811 275 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR 332 (365)
Q Consensus 275 ~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~ 332 (365)
.++..+|++++|+..|+++++++|.+......+..+....+++ +.....+.+++...
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~-eeA~~~~~~~l~~~ 436 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI-DDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH-HHHHHHHHHHHHhc
Confidence 9999999999999999999999999876654444333444444 34444577776553
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.20 E-value=3.2e-10 Score=120.43 Aligned_cols=110 Identities=5% Similarity=-0.072 Sum_probs=58.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 017811 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265 (365)
Q Consensus 186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~ 265 (365)
...|..+.+.|++++|+..|.+++.+.|++.. +++|+|.++..+|++++|+..+.++++++|+
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~-----------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSN-----------------YQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 33444444444444444444444444444322 2555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
++.+++.+|.++..+|++++|+..|++++.++|++..+......+..
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 55555555555555555555555555555555555555555544433
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.18 E-value=4.2e-10 Score=96.44 Aligned_cols=110 Identities=20% Similarity=0.162 Sum_probs=96.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHH
Q 017811 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 256 (365)
Q Consensus 177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~ 256 (365)
.....+..+...|..+...|+|++|+.+|++++...++... ...++.++|.++.++|+|++|+..+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND--------------RSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch--------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35567778899999999999999999999999998765321 1235899999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCc
Q 017811 257 SLVLGEDENNVKALFRRGKARAELGQ--------------TDAAREDFLKAGKFAPED 300 (365)
Q Consensus 257 ~~aL~~~p~n~ka~~~~g~a~~~l~~--------------~~~A~~~l~~al~l~P~n 300 (365)
.+++.++|.+..+++.+|.++..+|+ +++|+..+++++.++|+|
T Consensus 96 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 96 HQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999999999999998 677888888888888876
No 48
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.18 E-value=8.4e-10 Score=117.28 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811 196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 275 (365)
Q Consensus 196 ~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~ 275 (365)
|++.+|+..|.+|+.+.|. ..++.|+|.++.++|++++|+..+.+++.++|+++.+++.+|.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~------------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS------------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5555555555555555553 2358999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 276 ARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 276 a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
++..+|++++|+..|+++++++|++..+...++.+....++..+... .|++.+...|+..+.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~Al~l~P~~a~i 713 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLVIDDIDNQALI 713 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCCchh
Confidence 99999999999999999999999999999999999988888776665 599999988876555
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.18 E-value=5e-10 Score=100.72 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=99.7
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+..+...|..++..|+|..|+..|.+++...|.+... ..+++++|.+|+++++|++|+..+++++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA--------------EQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999875421 2358999999999999999999999999
Q ss_pred hCCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811 261 GEDENNVK---ALFRRGKARAEL--------GQTDAAREDFLKAGKFAPEDKSIAREL 307 (365)
Q Consensus 261 ~~~p~n~k---a~~~~g~a~~~l--------~~~~~A~~~l~~al~l~P~n~~~~~~l 307 (365)
+.+|+++. ++|.+|.++..+ +++++|+..|++++..+|++..+...+
T Consensus 98 ~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 98 RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 99998876 799999999987 889999999999999999987655443
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=3.4e-10 Score=92.64 Aligned_cols=122 Identities=12% Similarity=0.036 Sum_probs=105.3
Q ss_pred HHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 017811 203 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 282 (365)
Q Consensus 203 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~ 282 (365)
..|.+++...|.+.. +++++|.+++..|++++|+..+++++.++|.+..+++++|.++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 66 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE-----------------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE 66 (135)
T ss_pred hhHHHHHcCChhhHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 467888888887533 388999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhH
Q 017811 283 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWL 342 (365)
Q Consensus 283 ~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~ 342 (365)
+++|...|++++.++|.+......++.+....++..+.. +.|.+.+...|+......+.
T Consensus 67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGENPEYSELK 125 (135)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccccchHHHHH
Confidence 999999999999999999999999999988877765554 45888888887665544333
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7.7e-10 Score=104.30 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=121.4
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
+..|--+|.+++..++-..|+..|++|++++|.|+. +++.||++|--++.+-=|+-++++|++
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR-----------------AWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR-----------------AWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH-----------------HHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 345567999999999999999999999999999865 499999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811 262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR 332 (365)
Q Consensus 262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~ 332 (365)
+.|++...|--+|.||..+++.++|+++|++|+.....+..+...|+.+++.+++.+++. ++|.+.+...
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v~~~ 496 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYVEVS 496 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999888999999999999999887654 4588877644
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.9e-10 Score=106.89 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=105.5
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 258 (365)
...|..+.-.|..+|-.|++..|...+.++|.+.|.+.. +|..||..|+..++..+-..++++
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-----------------lyI~~a~~y~d~~~~~~~~~~F~~ 385 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-----------------LYIKRAAAYADENQSEKMWKDFNK 385 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-----------------HHHHHHHHHhhhhccHHHHHHHHH
Confidence 445778889999999999999999999999999988633 477888888888888888888888
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811 259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 337 (365)
Q Consensus 259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~ 337 (365)
|..+||+|+..||.||++++-+++|++|+.+|++|+.|+|+|.-...++.-+.-++.+..+. ...|...-.+-|.+..
T Consensus 386 A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~-m~~Fee~kkkFP~~~E 463 (606)
T KOG0547|consen 386 AEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES-MKTFEEAKKKFPNCPE 463 (606)
T ss_pred HHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCch
Confidence 88888888888888888888888888888888888888888766665555444444433322 2335444344444443
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=2.6e-10 Score=111.63 Aligned_cols=136 Identities=17% Similarity=0.147 Sum_probs=112.0
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
+|...|..|.++++|+.|.-+|++|++++|.+. .+..-+|..+.++|+.++|+..+++|+.+|
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns-----------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS-----------------VILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccch-----------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 455677788888888888888888888887752 346778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 337 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~ 337 (365)
|.|+-+.|.+|.++..+++|++|+..|+..-++-|++..+...++++.++.+....+.+. |.=+.+.+|...+
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~-f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH-FSWALDLDPKGAQ 626 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh-hHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999988888887766665 7777777776555
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=5.4e-10 Score=104.27 Aligned_cols=127 Identities=14% Similarity=-0.006 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811 196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 275 (365)
Q Consensus 196 ~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~ 275 (365)
+..+.++..+.++|...+.+.. .....|+++|.+|..+|++.+|+.+|+++++++|+++.+|+.+|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~-------------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 106 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDE-------------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGI 106 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcH-------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4667899999999975543211 123459999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811 276 ARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 336 (365)
Q Consensus 276 a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~ 336 (365)
++..+|++++|+..|.++++++|++..+...++.+....++..+... .|.+.+...|+..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~~P~~~ 166 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQDDPNDP 166 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCH
Confidence 99999999999999999999999999999999988777666665544 4777777777654
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=8.7e-10 Score=111.66 Aligned_cols=134 Identities=10% Similarity=-0.129 Sum_probs=116.0
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+...|..+...|++++|+..|++|+++.|++.. +++++|.++..+|++++|+..++++++++
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD-----------------IKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4556788899999999999999999999998744 48999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~-P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
|.++.+++.++.+++..|++++|+..+++++... |+++.+...++.+....++..++... +.++....+..
T Consensus 403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~-~~~~~~~~~~~ 474 (553)
T PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL-TKEISTQEITG 474 (553)
T ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH-HHHhhhccchh
Confidence 9999988888888999999999999999999885 78888888899888777776655554 77777666643
No 56
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.16 E-value=1.5e-10 Score=82.33 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=61.0
Q ss_pred hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301 (365)
Q Consensus 237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~ 301 (365)
+.+|..+++.|+|++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999985
No 57
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.15 E-value=1.3e-10 Score=87.31 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG 274 (365)
Q Consensus 195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g 274 (365)
+|+|+.|+..|++++...|.+.. ...++++|.||+++|+|++|+..+++ +..+|.+...++.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~---------------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN---------------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH---------------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChh---------------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHH
Confidence 58999999999999999986321 22478899999999999999999999 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 017811 275 KARAELGQTDAAREDFLKA 293 (365)
Q Consensus 275 ~a~~~l~~~~~A~~~l~~a 293 (365)
+|+..+|+|++|+..|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=1.4e-09 Score=95.88 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=91.3
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHH---HH---H---hhchhhhHHHHHHH
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDM---AL---A---VKNPCHLNMAACLL 244 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~---~~---~---~~~~~~~nla~~~~ 244 (365)
+..+...|..++..|+|++|+..|.+++...|.+...-. .+...+. .. . -...++.++|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 444555566666666666666666666665554322100 0000000 00 0 00124677788888
Q ss_pred HhcCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 017811 245 KLKRYEEAIGQCSLVLGED--ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK 322 (365)
Q Consensus 245 kl~~~~~A~~~~~~aL~~~--p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k 322 (365)
..|++++|+..+.+++... +.....++.+|.++...|++++|...|.+++..+|++..+...+..+....++..+..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~- 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR- 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH-
Confidence 8888888888888877643 4556677778888888888888888888888888887777777777766666655443
Q ss_pred HHHhcccCC
Q 017811 323 EIYKGIFGP 331 (365)
Q Consensus 323 ~~y~kmf~~ 331 (365)
..+.++...
T Consensus 190 ~~~~~~~~~ 198 (234)
T TIGR02521 190 AYLERYQQT 198 (234)
T ss_pred HHHHHHHHh
Confidence 346665554
No 59
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.15 E-value=4.8e-10 Score=83.64 Aligned_cols=98 Identities=33% Similarity=0.415 Sum_probs=89.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
+...|..++..|++.+|+..|.+++...|.+. .+++++|.|+...+++++|+..+..++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA-----------------DAYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56788899999999999999999999988753 2488999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
.+..+++.+|.++...|+++.|...+.+++.++|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999998874
No 60
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.12 E-value=1.3e-10 Score=83.66 Aligned_cols=67 Identities=28% Similarity=0.342 Sum_probs=62.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLV 259 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~a 259 (365)
.|..+...|..++..|+|.+|+..|++||++.|.+.. +++|+|.||.++| ++.+|+.+++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-----------------~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE-----------------AYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH-----------------HHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3678899999999999999999999999999998644 5999999999999 799999999999
Q ss_pred HhCCC
Q 017811 260 LGEDE 264 (365)
Q Consensus 260 L~~~p 264 (365)
|+++|
T Consensus 65 l~l~P 69 (69)
T PF13414_consen 65 LKLDP 69 (69)
T ss_dssp HHHST
T ss_pred HHcCc
Confidence 99998
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.12 E-value=1.1e-09 Score=112.23 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=124.0
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+..+...|......|+|++|...+..++++.|++.. ++.++|.++.+++++++|+..++++|
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-----------------a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE-----------------AFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 3566778999999999999999999999999999743 59999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 336 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~ 336 (365)
..+|+|..+++.+|.++.++|+|++|+..|++++..+|++..++-.++.+.+..++..++.. .|.+.+.......
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~-~~~~a~~~~~~~~ 222 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD-VLQAGLDAIGDGA 222 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhhCcch
Confidence 99999999999999999999999999999999999999999999999999887777765554 4888877666554
No 62
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.11 E-value=9.6e-10 Score=113.40 Aligned_cols=129 Identities=16% Similarity=0.074 Sum_probs=105.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHH----HHHHHHHHHhCCC
Q 017811 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE----AIGQCSLVLGEDE 264 (365)
Q Consensus 189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~----A~~~~~~aL~~~p 264 (365)
|..++..|++.+|+..|.+++...|.+. .+++++|.+|..+|++++ |+..|++++.++|
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~-----------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGA-----------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 5566677777777777777777776643 247889999999999885 7899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
+++.+++.+|.++..+|++++|+..|++++.++|++..+...+..+....++..+.... |.+++...|..
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~-l~~al~~~P~~ 351 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE-FVQLAREKGVT 351 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHhCccc
Confidence 99999999999999999999999999999999999998888888888777777655444 78887776653
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=3.6e-09 Score=93.27 Aligned_cols=137 Identities=15% Similarity=0.014 Sum_probs=104.5
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHH---HHHH--------hhchhhhHHHHHH
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRD---MALA--------VKNPCHLNMAACL 243 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~---~~~~--------~~~~~~~nla~~~ 243 (365)
..+...|..++..|++++|+..|.+++...|.+...-. .+...+ .... ....++.++|.|+
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 45556777888888888888888888887776432100 000000 0000 1124688999999
Q ss_pred HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811 244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 319 (365)
Q Consensus 244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~ 319 (365)
...|++++|+..+.+++..+|.+..+++.+|.++...|++++|...+++++.+.|.+......+..+....+...+
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999888877777777665555443
No 64
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=3e-09 Score=90.73 Aligned_cols=110 Identities=20% Similarity=0.101 Sum_probs=93.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
....+..+...|..++..|+|++|+..|.+|+.+.++... ...+++|+|.+|..+|++++|+..|.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~--------------~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD--------------RSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh--------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3457888999999999999999999999999998765321 12369999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCcH
Q 017811 258 LVLGEDENNVKALFRRGKARA-------ELGQTD-------AAREDFLKAGKFAPEDK 301 (365)
Q Consensus 258 ~aL~~~p~n~ka~~~~g~a~~-------~l~~~~-------~A~~~l~~al~l~P~n~ 301 (365)
+++.++|.+..+++.+|.++. .+|+++ +|+..|++++.++|.+.
T Consensus 97 ~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 97 QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999999999999999 777766 56666667888888654
No 65
>PRK15331 chaperone protein SicA; Provisional
Probab=99.08 E-value=2e-09 Score=89.43 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=96.5
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
.+.....|-.+|..|+|.+|...|+-...+.+.+..+ ++.||.|+..+++|++|+..|..+..
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y-----------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY-----------------TMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999998888887665 89999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811 262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 305 (365)
Q Consensus 262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~ 305 (365)
++++++..+|+.|+||+.+|+.+.|+..|..++. .|.+..++.
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 9999999999999999999999999999999998 566555443
No 66
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=6.3e-09 Score=97.64 Aligned_cols=141 Identities=13% Similarity=0.010 Sum_probs=108.9
Q ss_pred HHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH--HHHHHHHH
Q 017811 181 AADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY--EEAIGQCS 257 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~--~~A~~~~~ 257 (365)
....+..+|..+...+ ++.+|+..+.+++..+|+++. ++++++.++.+++.. .+++.+++
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-----------------aW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-----------------IWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH-----------------HhHHHHHHHHHcCchhhHHHHHHHH
Confidence 3445566677777766 567788888888877777643 488999999888874 78899999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH------HHHHHHHHHHHhcccCC
Q 017811 258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE------KAVYKKQKEIYKGIFGP 331 (365)
Q Consensus 258 ~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~------~~~~~~~k~~y~kmf~~ 331 (365)
++|+++|.|..||+.|+.++..+|+|++|+..+.++++++|.|..+......+.... ....+.+-....+++..
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888887765433 11224566656677777
Q ss_pred CCCcccc
Q 017811 332 RPEPKQK 338 (365)
Q Consensus 332 ~~~~~~~ 338 (365)
.|.+...
T Consensus 213 ~P~N~Sa 219 (320)
T PLN02789 213 NPRNESP 219 (320)
T ss_pred CCCCcCH
Confidence 6655443
No 67
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.03 E-value=3e-09 Score=109.79 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=100.9
Q ss_pred HhhhhhhhhhhhhhHHH----HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 184 RRKMDGNALFKEEKLEE----AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
.+...|..++..|++.+ |+..|++++.+.|.+.. ++.++|.++...|++++|+..++++
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR-----------------IVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44567888899999985 89999999999887643 4788888888888888888888888
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 334 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~ 334 (365)
+.++|++..+++.+|.++..+|++++|+..|++++..+|++......+..+....++..+. ...|.+.+...|+
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA-~~~l~~al~~~P~ 384 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA-ESVFEHYIQARAS 384 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhChh
Confidence 8888888888888888888888888888888888888888766555555554444444333 3336665555544
No 68
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.03 E-value=2.2e-10 Score=104.40 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (365)
Q Consensus 174 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 253 (365)
..++.++.|...+..+...+..|.++.|+..|..||.+.|... .+|.++|.++++++++..|+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a-----------------~l~~kr~sv~lkl~kp~~ai 168 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA-----------------ILYAKRASVFLKLKKPNAAI 168 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh-----------------hhcccccceeeeccCCchhh
Confidence 4567899999999999999999999999999999999999853 35999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 254 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 254 ~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
.+|..+++++|+..+-|-.+|.++..+|+|++|..+|..+++++-+
T Consensus 169 rD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 169 RDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999998744
No 69
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.7e-09 Score=97.25 Aligned_cols=101 Identities=22% Similarity=0.205 Sum_probs=95.2
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
+-+-|.-+++.++|.+|+..|++||+++|.|+-.|.+||.||..||+|+.|+++.+.|+.+||....+...|+.++..+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCccc
Q 017811 316 AVYKKQKEIYKGIFGPRPEPKQ 337 (365)
Q Consensus 316 ~~~~~~k~~y~kmf~~~~~~~~ 337 (365)
++.++... |+|.+..+|.+..
T Consensus 164 k~~~A~~a-ykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 164 KYEEAIEA-YKKALELDPDNES 184 (304)
T ss_pred cHHHHHHH-HHhhhccCCCcHH
Confidence 99988888 9999999998873
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=4.8e-09 Score=92.70 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=113.5
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..++..|...+..|+|..|+..+++|..+.|.++.+ ++-+|.||.++|+++.|...|.+++++
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~-----------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA-----------------WNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh-----------------hhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 345559999999999999999999999999998764 999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
.|+++.++.++|..|+-.|+++.|...+..+...-+.|..+...|..+...+......++-
T Consensus 164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 9999999999999999999999999999999998888999999999988777776655544
No 71
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.99 E-value=9.9e-09 Score=93.59 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=96.7
Q ss_pred HHhhhhhhhh-hhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 183 DRRKMDGNAL-FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 183 ~~~k~~G~~~-~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
......+..+ ++.|+|.+|+..|+..+...|+... ...+++.+|.+|+..|+|++|+..|..++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--------------QPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555555 5679999999999999999998532 133589999999999999999999999999
Q ss_pred CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 262 EDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 262 ~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
..|++ +.+++.+|.++..+|++++|...|+++++..|++..+.....++
T Consensus 209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 88875 67999999999999999999999999999999988766555544
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=9.3e-10 Score=106.32 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=91.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
..|..|+-.++|++|+.+|+.||...|.|+. +++.||..+..-.+..+||..|++||++.|..
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-----------------lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-----------------LWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCchHH-----------------HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 4788899999999999999999999999854 49999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
+.+.|++|.+++.+|.|.+|...|-.||.+.++
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999876
No 73
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.97 E-value=2.2e-08 Score=96.69 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=97.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
+...|..++..|++.+|+..|.++++..|.. ..+++.+|.+|.+.|++++|+..+++++..+|
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQC-----------------VRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 3445566666677777777777776665543 22477888889999999999999999988888
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811 265 NN-VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 336 (365)
Q Consensus 265 ~n-~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~ 336 (365)
.+ ..++..++.+|..+|++++|...+++++.++|++..+ ..+..+....++.. .....+.+++...|+..
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~-~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE-AAQALLREQLRRHPSLR 316 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH-HHHHHHHHHHHhCcCHH
Confidence 76 4567788889999999999999999999888877544 55666655555554 44556877877766554
No 74
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.96 E-value=1.2e-08 Score=107.72 Aligned_cols=137 Identities=25% Similarity=0.310 Sum_probs=105.1
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+..+...|..++..|+|++|+..|.+++...|.+.. +++.+|.+++..|++++|+..++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY-----------------AKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----------------hHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567788999999999999999999999999887533 3777888888888888888888888
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 334 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~ 334 (365)
+..+|.+..+++.+|.++...|++++|...|++++.++|++..+...+..+....++..+. ...+..+....|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A-~~~~~~~~~~~~~ 259 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA-EKHADALLKKAPN 259 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCC
Confidence 8888888888888888888888888888888888888888877777776666555544433 3445555555444
No 75
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.96 E-value=3.2e-08 Score=100.04 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=124.2
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+..+..+||.+|..|++++|...+..+|+..|.+.. +|..||.||-.+|+..+|+...-.|-
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~-----------------ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI-----------------AYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh-----------------hHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3678899999999999999999999999999998644 49999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 333 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~ 333 (365)
-++|.+..-|.+.+.....+|+++.|.-+|.+|++++|.|.........+.++.++...+.. .|..+|...|
T Consensus 201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~-~f~~l~~~~p 272 (895)
T KOG2076|consen 201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME-TFLQLLQLDP 272 (895)
T ss_pred hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH-HHHHHHhhCC
Confidence 99999999999999999999999999999999999999999998888888888887765554 4999999888
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.96 E-value=1.6e-08 Score=110.96 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=89.6
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..+...|..+++.|++++|+..|+++++..|.+.... .....+......++.++|.++++.|++++|+..|++++.+
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~---~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD---KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh---HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455677788888888888888888888777643210 0011111111223456677888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
+|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888877766665543
No 77
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.96 E-value=3.5e-08 Score=78.23 Aligned_cols=115 Identities=24% Similarity=0.268 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 255 (365)
Q Consensus 176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 255 (365)
...++....+-.+|..+...|+.+.|++.|.++|.+.|.. .++|+|+|.++--.|+.++|+.+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-----------------aSayNNRAQa~RLq~~~e~ALdD 99 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER-----------------ASAYNNRAQALRLQGDDEEALDD 99 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-----------------hHhhccHHHHHHHcCChHHHHHH
Confidence 3567788888899999999999999999999999999986 44699999999999999999999
Q ss_pred HHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811 256 CSLVLGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 309 (365)
Q Consensus 256 ~~~aL~~~p~n----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~ 309 (365)
.+++|++...- ..+|..+|..|..+|+-+.|..+|..|.++-. +-++.+|-.
T Consensus 100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS--~FAr~QLV~ 155 (175)
T KOG4555|consen 100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS--KFAREQLVE 155 (175)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC--HHHHHHHHh
Confidence 99999987554 35899999999999999999999999999865 344444443
No 78
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.96 E-value=7.8e-09 Score=113.35 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=116.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
..|..++..|++++|+..|++++...|.+.. ++.++|.+|+++|++++|+.+++++++++|++
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~-----------------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE-----------------ALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4588999999999999999999999998643 48999999999999999999999999999987
Q ss_pred HH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811 267 VK--------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR 332 (365)
Q Consensus 267 ~k--------------a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~ 332 (365)
.. .+..+|.++...|++++|+..|++++.++|++..+...+..+....++..++.+ .|.+++...
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL~~~ 415 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQALRMD 415 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC
Confidence 53 234568899999999999999999999999999999999999888877766654 499999888
Q ss_pred CCccc
Q 017811 333 PEPKQ 337 (365)
Q Consensus 333 ~~~~~ 337 (365)
|....
T Consensus 416 p~~~~ 420 (1157)
T PRK11447 416 PGNTN 420 (1157)
T ss_pred CCCHH
Confidence 76543
No 79
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=1.4e-08 Score=95.40 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=113.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHHHHHhCCCCCHHHH
Q 017811 192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGEDENNVKAL 270 (365)
Q Consensus 192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~aL~~~p~n~ka~ 270 (365)
+...+++.+|+..+.++|.++|.++. ++.+++.++.+++ .+.+++..++++++.+|+|..+|
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~yt-----------------aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW 109 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYT-----------------VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW 109 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHH-----------------HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence 55678899999999999999999754 4999999999999 68999999999999999999999
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811 271 FRRGKARAELGQT--DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 337 (365)
Q Consensus 271 ~~~g~a~~~l~~~--~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~ 337 (365)
+.|+.++..+++. ++++..+.++++++|+|-.+....+.+....+.+.+ +-..+.++++.++.+..
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHCCCchh
Confidence 9999999999984 788999999999999999999999999888877664 56668899887776543
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.96 E-value=7.3e-09 Score=99.07 Aligned_cols=114 Identities=13% Similarity=0.022 Sum_probs=102.3
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
+...|...+..++|.+|+..|+++|+++|++..+|+.+|.+|..+|+|++|+.++++++.++|++..++..++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhcccCCCCCccccchhHHHHHHHHH
Q 017811 316 AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLV 350 (365)
Q Consensus 316 ~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~ 350 (365)
++.++... |.+.+...|+......|...+-..+.
T Consensus 85 ~~~eA~~~-~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 EYQTAKAA-LEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 88766655 99999999988877777766655553
No 81
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=5.9e-09 Score=100.58 Aligned_cols=80 Identities=29% Similarity=0.316 Sum_probs=75.1
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
.+.+.|||.++-+++.|.+||.+++++|.+.|.++.++-..|.+|..+|+++.|+..|.++|-++|+|..+...|+.+..
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999999988888886544
No 82
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.95 E-value=2.8e-08 Score=89.87 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=107.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
+..+...|..++..|+|.+|+..|++++...|.... ...+.+++|.+|+++++|.+|+..+++.++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~--------------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY--------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345678899999999999999999999999997532 234578999999999999999999999999
Q ss_pred CCCCCH---HHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHHHH
Q 017811 262 EDENNV---KALFRRGKARAELGQ------------------TDAAREDFLKAGKFAPED---KSIARELRLLAEHEKAV 317 (365)
Q Consensus 262 ~~p~n~---ka~~~~g~a~~~l~~------------------~~~A~~~l~~al~l~P~n---~~~~~~l~~l~~~~~~~ 317 (365)
.+|+++ .|+|.+|.++..++. ..+|+..|+..++..|+. +++...+..|+.++.++
T Consensus 98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 999875 589999999866651 257889999999999986 45666677777777776
Q ss_pred HHHHHHHHhc
Q 017811 318 YKKQKEIYKG 327 (365)
Q Consensus 318 ~~~~k~~y~k 327 (365)
+-...+.|.+
T Consensus 178 e~~ia~~Y~~ 187 (243)
T PRK10866 178 ELSVAEYYTK 187 (243)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 83
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.93 E-value=5.3e-09 Score=76.03 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=65.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 309 (365)
Q Consensus 239 la~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~ 309 (365)
|...|++.++|++|+.+++.++.++|+++.+++.+|.++..+|+|.+|+.+|.++++++|++..+......
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999998887765554
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.4e-08 Score=94.69 Aligned_cols=157 Identities=14% Similarity=0.070 Sum_probs=127.6
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+..++.+|..++-..+.+.|+.+|+++|.+.|+....... .-.... ....-+.|.-.++.|+|..|...|+.+
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~---~~~~k~--le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA---SMMPKK--LEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH---hhhHHH--HHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 456778889999999999999999999999999986543211 111111 123667888899999999999999999
Q ss_pred HhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 260 LGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 260 L~~~p~n----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
|.+||+| ++.|++||.+...+|+..+|+.+...|+.|+|.-..+....+.|+..+.++..+.+. |.+..+...+.
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d-~~~a~q~~~s~ 354 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED-YEKAMQLEKDC 354 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccc
Confidence 9999986 568999999999999999999999999999999888888888998888888776655 88887777765
Q ss_pred cccchhH
Q 017811 336 KQKKNWL 342 (365)
Q Consensus 336 ~~~~~~~ 342 (365)
..++.|+
T Consensus 355 e~r~~l~ 361 (486)
T KOG0550|consen 355 EIRRTLR 361 (486)
T ss_pred chHHHHH
Confidence 5554443
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=1.8e-08 Score=87.59 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=105.0
Q ss_pred hhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 231 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 231 ~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
....++..||.-|+..|++..|...+++||+.||++..+|.-+|.+|..+|+.+.|.+.|++|+.++|+|.++....+-.
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccccchhHHHHHHHH
Q 017811 311 AEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL 349 (365)
Q Consensus 311 ~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~ 349 (365)
...+++..+.. ++|.+.+..+-=..+...|..+.||.+
T Consensus 113 LC~qg~~~eA~-q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 113 LCAQGRPEEAM-QQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHhCCChHHHH-HHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 77777665554 558888877777777788888888888
No 86
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.92 E-value=3.9e-09 Score=97.60 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=98.1
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+..+...|..+.+.|++++|+..|++|++..|++.. +..+++.+++..|+++++...+....
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~-----------------~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD-----------------ARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH-----------------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 3445677899999999999999999999999998754 37788899999999999888888888
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf 329 (365)
...|.++..+..+|.++..+|++++|+..|++++..+|+|+.+...+..+....+...++.. ++++.+
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~ 275 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQAL 275 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 87788888899999999999999999999999999999999999999998777766655443 344444
No 87
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.92 E-value=2.2e-08 Score=105.84 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=88.6
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+...|..++..|+|.+|+..|.+++...|.+. .+.+++.++.++|++++|+..+.++++.+
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ------------------NAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345578888899999999999999998877641 24566666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
|+++.+++.+|.++..+|++++|+..|++++..+|++..+...+..+....++ .+...++.+++...|+.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD--PRALEYAEKALKLAPNI 836 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc--HHHHHHHHHHHhhCCCC
Confidence 66666666666666666666666666666666666666666666655554444 23555566665555443
No 88
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.88 E-value=2.3e-08 Score=81.38 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=96.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
+..+...|...++.|+|..|+..++......|..... ..+.+.|+-+|++.++|.+|+..+++-|+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya--------------~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA--------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc--------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3567788999999999999999999999888875332 34688999999999999999999999999
Q ss_pred CCCCCHH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCcHHHHHH
Q 017811 262 EDENNVK---ALFRRGKARAELGQ---------------TDAAREDFLKAGKFAPEDKSIARE 306 (365)
Q Consensus 262 ~~p~n~k---a~~~~g~a~~~l~~---------------~~~A~~~l~~al~l~P~n~~~~~~ 306 (365)
++|.+++ |+|.+|.+++.+.. ...|..+|+..+...|++.-+...
T Consensus 76 LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 76 LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999875 99999999999987 889999999999999998655443
No 89
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.88 E-value=6.2e-09 Score=74.54 Aligned_cols=68 Identities=26% Similarity=0.276 Sum_probs=62.3
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 243 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 243 ~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
+++.|+|++|+..+++++..+|+|..+++.+|.+|+..|++++|...+.+++..+|+++.+...+..|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 36789999999999999999999999999999999999999999999999999999998888776643
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=4e-08 Score=88.33 Aligned_cols=131 Identities=12% Similarity=-0.053 Sum_probs=107.4
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh--------cCHHHHHH
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL--------KRYEEAIG 254 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~ 254 (365)
..+...|..++..|+|.+|+..|.++++..|++... ..+++++|.|+..+ +++++|+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~ 136 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA--------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFE 136 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch--------------HHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 346778999999999999999999999999976432 12478899999887 89999999
Q ss_pred HHHHHHhCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHH
Q 017811 255 QCSLVLGEDENNVKAL-----------------FRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELRLLAEHE 314 (365)
Q Consensus 255 ~~~~aL~~~p~n~ka~-----------------~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~l~~l~~~~ 314 (365)
.+++++..+|++..++ +.+|..++..|++.+|+..|++++...|++ ..++..+..+....
T Consensus 137 ~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 137 AFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence 9999999999986542 467889999999999999999999998765 46777888888877
Q ss_pred HHHHHHHHHHHhcc
Q 017811 315 KAVYKKQKEIYKGI 328 (365)
Q Consensus 315 ~~~~~~~k~~y~km 328 (365)
++..+... .+..+
T Consensus 217 g~~~~A~~-~~~~l 229 (235)
T TIGR03302 217 GLKDLAQD-AAAVL 229 (235)
T ss_pred CCHHHHHH-HHHHH
Confidence 77765554 34433
No 91
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.87 E-value=5.9e-08 Score=85.44 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=103.6
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+..+...|..++..|+|.+|+..|++.+...|..... ..+.+.+|.++++.|+|..|+..++..+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a--------------~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA--------------PQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999875432 3468999999999999999999999999
Q ss_pred hCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHHHHHHHHHH
Q 017811 261 GEDENNV---KALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPED---KSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 261 ~~~p~n~---ka~~~~g~a~~~l~~-----------~~~A~~~l~~al~l~P~n---~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
...|+++ .|+|.+|.+++.+.. ..+|+..|+..+...|+. ..+...+..|..++.+++-...+
T Consensus 70 ~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 70 KLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999875 599999999877643 358999999999999997 45666677777776666655555
Q ss_pred HHhc
Q 017811 324 IYKG 327 (365)
Q Consensus 324 ~y~k 327 (365)
.|.+
T Consensus 150 ~Y~~ 153 (203)
T PF13525_consen 150 FYYK 153 (203)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 5544
No 92
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=4.6e-08 Score=72.66 Aligned_cols=97 Identities=25% Similarity=0.283 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
+++++|.++...|++.+|+..+.+++...|.+..+++.+|.++...+++++|+..|++++.+.|.+..+...+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999998888888887777
Q ss_pred HHHHHHHHHHHhcccCCC
Q 017811 315 KAVYKKQKEIYKGIFGPR 332 (365)
Q Consensus 315 ~~~~~~~k~~y~kmf~~~ 332 (365)
++..... ..+...+...
T Consensus 82 ~~~~~a~-~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEAL-EAYEKALELD 98 (100)
T ss_pred HhHHHHH-HHHHHHHccC
Confidence 7655443 4455555433
No 93
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.87 E-value=3.5e-08 Score=103.76 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=103.9
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..+...|..+...|++.+|+..|++++...|.+.. ++.++|.++...|++++|+..+.+++..
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-----------------YQRGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34777889999999999999999999999998744 3789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811 263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 313 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~ 313 (365)
+|++.. ++.+|.++...|++++|+..|+++++++|++..+...+..+...
T Consensus 113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999998888776553
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.7e-08 Score=95.09 Aligned_cols=141 Identities=20% Similarity=0.207 Sum_probs=119.4
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+-+.||..|..|+|++|...|+.||.-...+ ..+++|+|..+-++|+.++|+.+|-+.-.+-
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-----------------~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASC-----------------TEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHH-----------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999876554 2359999999999999999999999987777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhH
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWL 342 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~ 342 (365)
-+|+.+++.++.+|..+.+...|+++|.++..+-|+++.+...|..++.+..+.-++....| .-+..-|-+....-|+
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y-dsyryfp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY-DSYRYFPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh-hcccccCcchHHHHHH
Confidence 78999999999999999999999999999999999999999999999988888777776644 3333335555444444
No 95
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.85 E-value=1.2e-07 Score=91.66 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHH---HHH----------hhchh
Q 017811 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDM---ALA----------VKNPC 235 (365)
Q Consensus 177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~---~~~----------~~~~~ 235 (365)
+....+......|..+...|++++|+..|.+++...|.+...-. .+...+. ... ....+
T Consensus 30 ~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 30 KESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred hhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 33444555666777777888888888888888887776532100 0000000 000 01123
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
+.++|.+|.+.|++++|+..+.++++.+|.+..++..++.++...|++++|+..+++++...|.+
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 55666666666666666666666666666666666666666666666666666666666665544
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.9e-08 Score=96.13 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=129.2
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------h----------------------
Q 017811 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------F---------------------- 221 (365)
Q Consensus 172 ~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~---------------------- 221 (365)
+..+.+..+.++.|...|......++=..||..+++|+++.|.+...-. .
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~ 388 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH 388 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh
Confidence 3445567888999999999999999999999999999999987543100 0
Q ss_pred ----------h------------hHHHHHHH--------hhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHH
Q 017811 222 ----------G------------KYRDMALA--------VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF 271 (365)
Q Consensus 222 ----------~------------~~~~~~~~--------~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~ 271 (365)
+ ...+.+.+ .-..++.-||..|.-.++|++|+++|+.||..+|+|...|.
T Consensus 389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWN 468 (579)
T KOG1125|consen 389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWN 468 (579)
T ss_pred ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHH
Confidence 0 00000000 11357788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811 272 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 328 (365)
Q Consensus 272 ~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km 328 (365)
|+|-++..-.+.++|+..|.+||+|.|+...++..|+...--++.++++.+-...-+
T Consensus 469 RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 469 RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888999988877755543
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.84 E-value=6.5e-08 Score=98.57 Aligned_cols=149 Identities=18% Similarity=0.205 Sum_probs=116.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
+...++.+|-.|+|..+...+..|+..... ..+.+..++++|.+|..+|+|++|..+|-+++..+|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~--------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTEN--------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 334666777777777777777777765422 234456699999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHhcccCCCCCccccch
Q 017811 265 NN-VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK---AVYKKQKEIYKGIFGPRPEPKQKKN 340 (365)
Q Consensus 265 ~n-~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~---~~~~~~k~~y~kmf~~~~~~~~~~~ 340 (365)
+| +-+++.+|+.|+..|+++.|...|.++++..|++.+....|+.++.... ...++...+..+.+...+. +..+
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~--d~~a 416 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV--DSEA 416 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc--cHHH
Confidence 99 8999999999999999999999999999999999999999999887662 3444556666676666643 3355
Q ss_pred hHHHHHHHH
Q 017811 341 WLIIFWQLL 349 (365)
Q Consensus 341 ~~~~~~~~~ 349 (365)
|..+..-|.
T Consensus 417 ~l~laql~e 425 (1018)
T KOG2002|consen 417 WLELAQLLE 425 (1018)
T ss_pred HHHHHHHHH
Confidence 555554443
No 98
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.82 E-value=3.8e-08 Score=81.54 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
..+.+|.-++..|++++|...|+.+..+||.|...||.+|.|+..+|+|.+|+..|.+|+.++|+|+.....++.|....
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhcccCC
Q 017811 315 KAVYKKQKEIYKGIFGP 331 (365)
Q Consensus 315 ~~~~~~~k~~y~kmf~~ 331 (365)
++.....+. |+..+..
T Consensus 117 G~~~~A~~a-F~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKA-LKAVVRI 132 (157)
T ss_pred CCHHHHHHH-HHHHHHH
Confidence 887766555 6655433
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.79 E-value=1.5e-08 Score=71.95 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=57.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
..|..++..|+|++|+..|++++...|.+.. +++.+|.|+..+|++++|+..++++++++|+|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE-----------------AWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999998644 49999999999999999999999999999998
Q ss_pred H
Q 017811 267 V 267 (365)
Q Consensus 267 ~ 267 (365)
+
T Consensus 65 p 65 (65)
T PF13432_consen 65 P 65 (65)
T ss_dssp H
T ss_pred C
Confidence 5
No 100
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.8e-08 Score=87.11 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=100.8
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHHHHHH
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQ 255 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~ 255 (365)
...++.|.-.|..|+..|++..|...|.+|+++.|++... +.-+|.+++... .-.++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~-----------------~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI-----------------LLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHhcCCcccHHHHHH
Confidence 3445567789999999999999999999999999998653 667777776654 57789999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
++++|.+||.|+.+++.+|..+++.|+|.+|...++..+.+.|.+..-+..+.....
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988777766665433
No 101
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=9.7e-09 Score=88.28 Aligned_cols=134 Identities=22% Similarity=0.114 Sum_probs=111.0
Q ss_pred CCCCCcEEEEEEEEeeecCcccccCCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHH
Q 017811 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYR 225 (365)
Q Consensus 146 ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~ 225 (365)
+|-.+++.-+|.+..+...-. ...++.++ .|.-+.++|+.|-..|-+..|...|.+++.+.|+.+.
T Consensus 35 ~~~qp~lqqEV~iarlsqlL~---~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~-------- 100 (297)
T COG4785 35 VPLQPTLQQEVILARMSQILA---SRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE-------- 100 (297)
T ss_pred ccCCccHHHHHHHHHHHHHHH---hccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH--------
Confidence 344444444444333332211 34555554 4788999999999999999999999999999998644
Q ss_pred HHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811 226 DMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302 (365)
Q Consensus 226 ~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~ 302 (365)
+++-+|..+...|+|+.|.+.++.++++||.+.-|+.+||.+++--|+|.-|..++.+-..-||+|+-
T Consensus 101 ---------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 101 ---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ---------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 48899999999999999999999999999999999999999999999999999999999999999864
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=1.3e-07 Score=97.32 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=96.5
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 258 (365)
.+.+..+...++.+++.+++++|+..+++++...|++... ++++|.|+.++|+|++|+..|++
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~-----------------~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE-----------------ILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH-----------------HHHHHHHHHHhcchHHHHHHHHH
Confidence 4455677789999999999999999999999999997554 99999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
++..+|++++++..+|.++..+|+.++|...|++|+.....
T Consensus 180 ~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 180 LSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999998654
No 103
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=8.4e-08 Score=85.89 Aligned_cols=114 Identities=19% Similarity=0.165 Sum_probs=101.2
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
....+.+-.+++.|+|..|...|..-|...|.... ...+++.||.|++.+|+|..|...|..+.+-
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--------------cchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 34888999999999999999999999999998533 2457999999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 263 DENNV---KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 263 ~p~n~---ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
.|.++ .++|.+|.+...+|+.++|...|+.+++-.|+...+...-..+
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 88875 4799999999999999999999999999999988776554443
No 104
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=9e-08 Score=81.59 Aligned_cols=136 Identities=11% Similarity=0.094 Sum_probs=103.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC-
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN- 266 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n- 266 (365)
..+.+|-...|..+...+...++..+.+ -...+++++|.++..+++|++|+..+++++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~ 69 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGE---------------KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY 69 (168)
T ss_pred cccccccccccccchhhhhHhccCCchh---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch
Confidence 3456666677777777775555443332 134569999999999999999999999999987763
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-------HH------HHHHHHHHhcccCC
Q 017811 267 --VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK-------AV------YKKQKEIYKGIFGP 331 (365)
Q Consensus 267 --~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~-------~~------~~~~k~~y~kmf~~ 331 (365)
..+++++|.++..+|++++|+..|++++.++|.+......+..+...+. +. ..+....|++.++.
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 4599999999999999999999999999999999888888777766332 22 22334567777777
Q ss_pred CCCcccc
Q 017811 332 RPEPKQK 338 (365)
Q Consensus 332 ~~~~~~~ 338 (365)
.|.....
T Consensus 150 ~p~~~~~ 156 (168)
T CHL00033 150 APGNYIE 156 (168)
T ss_pred CcccHHH
Confidence 7755533
No 105
>PRK01490 tig trigger factor; Provisional
Probab=98.75 E-value=1.1e-06 Score=86.56 Aligned_cols=88 Identities=16% Similarity=0.265 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (365)
Q Consensus 66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ 145 (365)
.+..||.|+|+|.+.. + |.+|+++. ..++.|.+|.+ ++++||+.+|.+|++|++..|.+++...|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~-g~~~~~~~--~~~~~~~lg~~-~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-D-GEEFEGGK--AEDFSLELGSG-RFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-C-CEECcCCC--CCceEEEEcCC-CcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence 3678999999999997 4 88998753 46899999999 8999999999999999999999988777765332
Q ss_pred CCCCCcEEEEEEEEeeecCc
Q 017811 146 VSPMADLVYEVVLIGFDETK 165 (365)
Q Consensus 146 ip~~~~l~~~iel~~~~~~~ 165 (365)
.|.++.|.|.+..+....
T Consensus 227 --agk~~~f~v~v~~V~~~~ 244 (435)
T PRK01490 227 --AGKEATFKVTVKEVKEKE 244 (435)
T ss_pred --CCCeEEEEEEEEEeccCC
Confidence 578899999999998654
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.74 E-value=9.9e-08 Score=75.63 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELR 308 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~l~ 308 (365)
.++++|..+++.|+|++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|+.++..+|++ ..+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 48999999999999999999999999999877 6799999999999999999999999999999986 56677777
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811 309 LLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 337 (365)
Q Consensus 309 ~l~~~~~~~~~~~k~~y~kmf~~~~~~~~ 337 (365)
.+....++..+.. ..|..++...|++..
T Consensus 84 ~~~~~~~~~~~A~-~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAK-ATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHH-HHHHHHHHHCcCChh
Confidence 7776666655444 558888777776543
No 107
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.72 E-value=1.9e-07 Score=98.32 Aligned_cols=132 Identities=14% Similarity=0.025 Sum_probs=115.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV 267 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ 267 (365)
--....-.|++.+|+..|.+++...|... .++.++|.++...|++.+|+..|+++|.++|.++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a-----------------~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~ 83 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPA-----------------RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND 83 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 33456678999999999999988666542 2489999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
.+++.+|.++...|++++|+..+++++..+|++.. ...+..+....++..++ -..|.+++...|+....
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~A-l~~l~~al~~~P~~~~~ 152 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDE-LRAMTQALPRAPQTQQY 152 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHH-HHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999 88888888777766554 45599999988876655
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.71 E-value=2e-07 Score=97.62 Aligned_cols=155 Identities=11% Similarity=0.036 Sum_probs=115.1
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh--------hhhhhHHHHHH---H------hhchhhhHHHHHHH
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFGKYRDMAL---A------VKNPCHLNMAACLL 244 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~--------~~~~~~~~~~~---~------~~~~~~~nla~~~~ 244 (365)
+...+..+...++.|+|..|+..|.++++..|.+... ...+...+... . .....+..+|.+|.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 4467889999999999999999999999999986311 11111111111 1 11223444477999
Q ss_pred HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI 324 (365)
Q Consensus 245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~ 324 (365)
.+|+|++|+..|+++++.+|+|+.+++-++.++...+++++|+..++++..++|.+... ..+..+.....+..+ +-..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHHH
Confidence 99999999999999999999999999999999999999999999999999999987665 445555444344433 5666
Q ss_pred HhcccCCCCCcccc
Q 017811 325 YKGIFGPRPEPKQK 338 (365)
Q Consensus 325 y~kmf~~~~~~~~~ 338 (365)
|++++...|+..+.
T Consensus 192 ~ekll~~~P~n~e~ 205 (822)
T PRK14574 192 SSEAVRLAPTSEEV 205 (822)
T ss_pred HHHHHHhCCCCHHH
Confidence 99999888876644
No 109
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.71 E-value=1.4e-07 Score=92.14 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=76.0
Q ss_pred CCCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCC
Q 017811 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (365)
Q Consensus 66 ~p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~ 145 (365)
.+..||.|+|+|+++. + |..|+++. ..++.|.+|.+ .+++||+.+|.+|++|++..|.+++...|+..+.
T Consensus 146 ~~~~gD~V~v~~~~~~-d-g~~~~~~~--~~~~~~~lg~~-~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-D-GEAFEGGK--AENFSLELGSG-QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-C-CEECcCCC--CCCeEEEECCC-CcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence 4678999999999976 4 89998763 56899999998 8999999999999999999999998888875442
Q ss_pred CCCCCcEEEEEEEEeeecCc
Q 017811 146 VSPMADLVYEVVLIGFDETK 165 (365)
Q Consensus 146 ip~~~~l~~~iel~~~~~~~ 165 (365)
+|.++.|.|++.++....
T Consensus 216 --~gk~~~f~v~i~~I~~~~ 233 (408)
T TIGR00115 216 --AGKEATFKVTVKEVKEKE 233 (408)
T ss_pred --CCCeEEEEEEEEEeccCC
Confidence 688999999999998654
No 110
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.70 E-value=6.3e-08 Score=69.22 Aligned_cols=67 Identities=27% Similarity=0.321 Sum_probs=59.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHH
Q 017811 192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF 271 (365)
Q Consensus 192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~ 271 (365)
+++.|+|.+|+..|++++...|.+.. +++++|.||++.|++++|...+.+++..+|+++..+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE-----------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH-----------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 46889999999999999999998754 4889999999999999999999999999999877776
Q ss_pred HHHH
Q 017811 272 RRGK 275 (365)
Q Consensus 272 ~~g~ 275 (365)
-+++
T Consensus 64 l~a~ 67 (68)
T PF14559_consen 64 LLAQ 67 (68)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=2.8e-07 Score=81.69 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=91.4
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
+.-+|..++..|+|..|+..+.++..++|+++++|.-+|.+|.++|++++|...|.+++++.|+++.+...+....-...
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhcccCCCCCccccch
Q 017811 316 AVYKKQKEIYKGIFGPRPEPKQKKN 340 (365)
Q Consensus 316 ~~~~~~k~~y~kmf~~~~~~~~~~~ 340 (365)
+.+.+++-+-.-.+....+....++
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHH
Confidence 8877777765555555544444433
No 112
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.68 E-value=3.2e-07 Score=77.14 Aligned_cols=110 Identities=27% Similarity=0.229 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh----------cCHHHHHHHHHHHHhCCCCC
Q 017811 197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----------KRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----------~~~~~A~~~~~~aL~~~p~n 266 (365)
-|+.|.+.|+.....+|.+.+. ++|=|.+++.+ .-+++|+.-++.||.++|+.
T Consensus 6 ~FE~ark~aea~y~~nP~Dadn-----------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADN-----------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHH-----------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhCcHhHHH-----------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence 4778999999999999987543 55555555554 34778999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 267 VKALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~-----------~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
..|++.+|.||..++. |++|..+|++|...+|+|...+..|....+.-.-+.+-.|.
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~ 136 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999998866 79999999999999999999999999887766666555554
No 113
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.68 E-value=2.9e-07 Score=78.80 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=84.0
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 309 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~ 309 (365)
..+++++|.++...|++++|+.+|++++.+.|+. ..+++.+|.++..+|++++|+..|.+++.++|++......+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4469999999999999999999999999887653 5799999999999999999999999999999999988888877
Q ss_pred HHHHHHHH-------------HHHHHHHHhcccCCCCCc
Q 017811 310 LAEHEKAV-------------YKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 310 l~~~~~~~-------------~~~~k~~y~kmf~~~~~~ 335 (365)
+...+.+. .....+.+.+.+...|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 76554432 223444566666666544
No 114
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=3.1e-07 Score=87.98 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA---LFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka---~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
.++|+|.+|+++|+|++|+..|+++|+++|++..+ ||++|.+|..+|++++|+.+|++|+++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999965 9999999999999999999999999983
No 115
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.6e-07 Score=95.71 Aligned_cols=144 Identities=15% Similarity=0.094 Sum_probs=118.2
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
-+.+.|..+|..|.+..|...+..|+..+......+ .-....+++.+|+|.|+-.++++..|...|..++...
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d-------e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD-------EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc-------ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 456788999999999999999999998843211100 0012235668999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
|.++.+|.|+|......++..+|...++.++.++..|+.++..++.++....+.....+. |..+|+.....
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~-f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK-FETILKKTSTK 597 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH-HHHHHhhhccC
Confidence 999999999998888899999999999999999999999999999998776666555444 77777666655
No 116
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=9.5e-08 Score=91.62 Aligned_cols=119 Identities=26% Similarity=0.216 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHH
Q 017811 175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEE 251 (365)
Q Consensus 175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~ 251 (365)
.-+....++..+.+||..|.......|+..|.+++...|.... +|.|+|.++++.+ +-..
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~-----------------~l~nraa~lmkRkW~~d~~~ 429 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIY-----------------LLENRAAALMKRKWRGDSYL 429 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhH-----------------HHHhHHHHHHhhhccccHHH
Confidence 3567888999999999999999999999999999999987543 5999999999975 6778
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 252 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
|+.+|..||+++|...||+||++.++..++++.+|+.+...+....|.+.+......-+
T Consensus 430 AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l 488 (758)
T KOG1310|consen 430 ALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCL 488 (758)
T ss_pred HHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999998999776665554433
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=1.6e-07 Score=93.73 Aligned_cols=103 Identities=26% Similarity=0.205 Sum_probs=81.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH--HHHHH
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG--QCSLV 259 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~--~~~~a 259 (365)
+..+...|..+..+|++.+|...|..|+.++|++.. +...+|.|+++.|+..-|.. ....+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~-----------------s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP-----------------SMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH-----------------HHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 344567778888888888888888888888887643 36778888888887766666 78888
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~ 301 (365)
+++||.|.+|||.+|.++..+|+.+.|..+|..|+++++.++
T Consensus 747 lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 747 LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 888888888888888888888888888888888888887765
No 118
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=3e-07 Score=76.40 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=86.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
....+..........+..+++..+...+...+.-.|.... ...+.+.+|.+++..|++++|+..++
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y--------------a~~A~l~lA~~~~~~g~~~~A~~~l~ 72 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY--------------AALAALQLAKAAYEQGDYDEAKAALE 72 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--------------HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4455666666666666777777777777777777766421 13346777777777777777777777
Q ss_pred HHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017811 258 LVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKG 327 (365)
Q Consensus 258 ~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~k 327 (365)
.++...|+. ..+.+|+|.+++..|+|++|+..|..+ .-.+-.+.+...++.+....++..++.. .|.+
T Consensus 73 ~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~-~y~~ 143 (145)
T PF09976_consen 73 KALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARA-AYQK 143 (145)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHH-HHHH
Confidence 777766544 347777777777777777777777552 2233345566666677666655544433 3543
No 119
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=5.2e-07 Score=87.39 Aligned_cols=166 Identities=17% Similarity=0.148 Sum_probs=115.6
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-hh-hH-----HHHHHHhh----------chhhhHHHHHHH
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FG-KY-----RDMALAVK----------NPCHLNMAACLL 244 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-~~-~~-----~~~~~~~~----------~~~~~nla~~~~ 244 (365)
+..|..-|..+.-.+..++|+.+|..|-++.+....-.+ .+ +. ......+. .-++.-+|.+.+
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 334555666666666666666666666666654321000 00 00 00000000 124778899999
Q ss_pred HhcCHHHHHHHHHHHHhC----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 017811 245 KLKRYEEAIGQCSLVLGE----DEN---NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 317 (365)
Q Consensus 245 kl~~~~~A~~~~~~aL~~----~p~---n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~ 317 (365)
..+.|.+|+.++..+|.. .+. ..-.+.++|.++..++.|++|+..|+++|.+.|.+..+...++.+...++..
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 999999999999999832 221 2345889999999999999999999999999999999999999998877766
Q ss_pred HHHHHHHHhcccCCCCCccccchhHHHHHHH
Q 017811 318 YKKQKEIYKGIFGPRPEPKQKKNWLIIFWQL 348 (365)
Q Consensus 318 ~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~ 348 (365)
. +.-..|-|.|...|++.-..-.++..++-
T Consensus 506 d-~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 506 D-KAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred H-HHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 5 45566899999999887665555555543
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1e-06 Score=84.23 Aligned_cols=128 Identities=16% Similarity=0.037 Sum_probs=111.6
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
..+..+..++..+.++.|.......+...|+|..+ ..-++.++++.|+.++|++.+++++.++
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~-----------------~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY-----------------LELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 45567777888888999999998888888988665 5567889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 328 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km 328 (365)
|++.-..+.+|++|++.|++.+|+..++..+.-+|+|+..+..|...+..+++..+.....-..+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877666555544444
No 121
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.58 E-value=2.7e-07 Score=66.90 Aligned_cols=70 Identities=30% Similarity=0.362 Sum_probs=63.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 268 (365)
Q Consensus 189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k 268 (365)
.+.++..++|..|+..+++++.+.|.+.. ++.++|.|+.++|+|.+|+.+++++++..|++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE-----------------LWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch-----------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 46789999999999999999999998754 4999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 017811 269 ALFRRGK 275 (365)
Q Consensus 269 a~~~~g~ 275 (365)
+..-++.
T Consensus 65 ~~~~~a~ 71 (73)
T PF13371_consen 65 ARALRAM 71 (73)
T ss_pred HHHHHHh
Confidence 8776654
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=4.8e-07 Score=94.21 Aligned_cols=134 Identities=14% Similarity=-0.044 Sum_probs=96.5
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH-----
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ----- 255 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~----- 255 (365)
....+....+.+...+++++|+..+..++...|....+ |+.+|..+++.+++..+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~-----------------yy~~G~l~~q~~~~~~~~lv~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA-----------------LYISGILSLSRRPLNDSNLLNLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh-----------------HHHHHHHHHhhcchhhhhhhhhhhh
Confidence 34566677788889999999999999999999986443 66666666666555544443
Q ss_pred ------------HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 256 ------------CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 256 ------------~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
+...+...+.|-.|++.+|.||..+|++++|...|+++++++|+|+.+...++...... ..++...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~ 170 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAIT 170 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHH
Confidence 22222223444478888888888888888888888888888888888888888776666 5666677
Q ss_pred HHhcccCCCC
Q 017811 324 IYKGIFGPRP 333 (365)
Q Consensus 324 ~y~kmf~~~~ 333 (365)
+|++.+..--
T Consensus 171 m~~KAV~~~i 180 (906)
T PRK14720 171 YLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHH
Confidence 7776654433
No 123
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.57 E-value=9.3e-08 Score=70.41 Aligned_cols=65 Identities=25% Similarity=0.278 Sum_probs=56.6
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhC----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGE----DE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~----~p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
..++.|+|.+|..+|+|++|+.++++++++ .+ .-..+++++|.++..+|++++|+..|++|+++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 457999999999999999999999999965 22 236799999999999999999999999999863
No 124
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.57 E-value=1.5e-06 Score=88.26 Aligned_cols=104 Identities=22% Similarity=0.166 Sum_probs=85.4
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+.-+.+.+..+...|+|.+|+.+|..++...+... .-+|+++|.||+.+|.+++|+.+|.+|
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~----------------~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN----------------AFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc----------------hhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455677888888899999999999988877665532 235889999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
|.++|+|..+...++..+..+|+.++|+..+.....-||.
T Consensus 476 l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 476 LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 9999999999999999999999999999888877644433
No 125
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=1.6e-07 Score=88.68 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=89.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 017811 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265 (365)
Q Consensus 186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~ 265 (365)
.+.||.+|++.+|.+|++.|+.||...|.-. .+++++++.|+|..+.++|.|+.||..|+.+++..|
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsin------------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p- 307 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSIN------------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP- 307 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccc------------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-
Confidence 3689999999999999999999999998631 456788999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 266 NVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
|.++-+++-.|++..|+-++-.+.|++.+.+
T Consensus 308 n~~a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 308 NFIAALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred cHHhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 7888889999999999999999999999875
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=4.9e-07 Score=89.87 Aligned_cols=135 Identities=14% Similarity=0.128 Sum_probs=107.4
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+.+++..|+..+.+++|.+|.++++..++++|--. ..|+++|.|.++++++..|..+|..++
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~-----------------~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQL-----------------GTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccch-----------------hHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 344455666667778999999999999999987643 349999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811 261 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 333 (365)
Q Consensus 261 ~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~ 333 (365)
.++|+|..+|.+++.+|+.+++-.+|...++.|++-+-++..+..+...+........++.+. |.+++.-+.
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A-~~rll~~~~ 618 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA-YHRLLDLRK 618 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH-HHHHHHhhh
Confidence 999999999999999999999999999999999998877777776666665655555544443 555544333
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=4.8e-06 Score=69.12 Aligned_cols=96 Identities=24% Similarity=0.257 Sum_probs=81.4
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.....|..++..|+|++|+..|+.++...++. .+...+.++||.+++..|+|++|+..+.. +.-.
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~--------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDP--------------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence 45568899999999999999999999977543 22345689999999999999999999966 3445
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al 294 (365)
+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5567788899999999999999999999885
No 128
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.53 E-value=2.7e-07 Score=85.35 Aligned_cols=138 Identities=16% Similarity=0.080 Sum_probs=101.5
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..+......+...+++.++...+.++....+... ...++..+|.++.+.|++++|+.+++++|++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD---------------SARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T----------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444555677888999999999888775432110 1224889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811 263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 336 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~ 336 (365)
+|+|..++..++.++...|+++++...+.......|.|+.+...++.+...+++..++. ..|.+.+...|++.
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al-~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL-EYLEKALKLNPDDP 248 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH-HHHHHHHHHSTT-H
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc-cccccccccccccc
Confidence 99999999999999999999999999999988888999899999999988888766544 45888877666443
No 129
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.51 E-value=1.6e-06 Score=69.24 Aligned_cols=98 Identities=24% Similarity=0.120 Sum_probs=84.9
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+.+.|..+-..|+..+|+..|++|+..-.... ....++.++|.++..+|++++|+..+++++...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~--------------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGA--------------DRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456788888999999999999999999644321 124468999999999999999999999999988
Q ss_pred CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 264 EN---NVKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 264 p~---n~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
|+ +......++.++..+|++++|+..+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 888888899999999999999999988875
No 130
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=3.9e-06 Score=76.47 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=77.8
Q ss_pred CCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHH
Q 017811 171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE 250 (365)
Q Consensus 171 ~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~ 250 (365)
.+++.+++ ...+...|..|+..|-|++|...|...+..-.- ...++-.|..+|.+..+|+
T Consensus 99 pdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-----------------a~~AlqqLl~IYQ~treW~ 158 (389)
T COG2956 99 PDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-----------------AEGALQQLLNIYQATREWE 158 (389)
T ss_pred CCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-----------------hHHHHHHHHHHHHHhhHHH
Confidence 34555544 566788899999999999999999876653211 1122344444555555555
Q ss_pred HHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 251 EAIGQCSLVLGEDENN-----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY 325 (365)
Q Consensus 251 ~A~~~~~~aL~~~p~n-----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y 325 (365)
+||+..++...+.+.. +..|..+|+.++...+++.|+..+++|++-+|++..+--.++.+....+++.+..+. |
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~-~ 237 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA-L 237 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH-H
Confidence 5555555555444432 224444555555555555555555555555555555555555554444444433333 4
Q ss_pred hcccCCCC
Q 017811 326 KGIFGPRP 333 (365)
Q Consensus 326 ~kmf~~~~ 333 (365)
..+++.++
T Consensus 238 e~v~eQn~ 245 (389)
T COG2956 238 ERVLEQNP 245 (389)
T ss_pred HHHHHhCh
Confidence 44444443
No 131
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.48 E-value=3.3e-06 Score=80.51 Aligned_cols=148 Identities=13% Similarity=0.030 Sum_probs=110.4
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-----------hhhHHHHHHHh---------hchhhhHHHHHH
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----------FGKYRDMALAV---------KNPCHLNMAACL 243 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-----------~~~~~~~~~~~---------~~~~~~nla~~~ 243 (365)
....+|..++..|++.+|+..+.+++...|.+...-. .+........+ ...++.++|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 3456788999999999999999999999998652200 01110111100 012456788999
Q ss_pred HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----HHHHHHHHHHHHHHHH
Q 017811 244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI----ARELRLLAEHEKAVYK 319 (365)
Q Consensus 244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~----~~~l~~l~~~~~~~~~ 319 (365)
..+|++++|+..++++++++|+++.+++.+|.++...|++++|+..+.+++.+.|.+... ...+..+....++..+
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999998854332 3356677666666655
Q ss_pred HHHHHHhcccCCC
Q 017811 320 KQKEIYKGIFGPR 332 (365)
Q Consensus 320 ~~k~~y~kmf~~~ 332 (365)
.. ..|...+...
T Consensus 205 A~-~~~~~~~~~~ 216 (355)
T cd05804 205 AL-AIYDTHIAPS 216 (355)
T ss_pred HH-HHHHHHhccc
Confidence 44 4467665433
No 132
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.1e-06 Score=74.92 Aligned_cols=131 Identities=14% Similarity=0.072 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 017811 197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA 276 (365)
Q Consensus 197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a 276 (365)
..+.-+...+.-|..+|.|..- +.-||.+|+.+|++..|...|.+++++.|+|+..+.-+|.+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~eg-----------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aea 199 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEG-----------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEA 199 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchh-----------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455667777788888887543 88999999999999999999999999999999999999999
Q ss_pred HHHcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhHHHH
Q 017811 277 RAELGQ---TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIF 345 (365)
Q Consensus 277 ~~~l~~---~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~ 345 (365)
++...+ -.++...|++++.+||.|..++..|..-....+++.+.. ..|++|++..|..++........
T Consensus 200 L~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 200 LYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCCchHHHHHHH
Confidence 988755 578999999999999999999999999877777776655 45999999999888775544333
No 133
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.48 E-value=1.8e-06 Score=85.15 Aligned_cols=146 Identities=18% Similarity=0.114 Sum_probs=112.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
.+..+..++..|..|...++|.+|+..|++|+.+...... +. ..-.+..+.|||..|.+.|+|.+|..+|+
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-----~~----h~~va~~l~nLa~ly~~~GKf~EA~~~~e 307 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-----ED----HPAVAATLNNLAVLYYKQGKFAEAEEYCE 307 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-----CC----CHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 3445556667999999999999999999999998863211 00 11135569999999999999999999999
Q ss_pred HHHhCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCc---HHHHHHHHHHHHHHHHHHHHH
Q 017811 258 LVLGED--------ENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-----PED---KSIARELRLLAEHEKAVYKKQ 321 (365)
Q Consensus 258 ~aL~~~--------p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~-----P~n---~~~~~~l~~l~~~~~~~~~~~ 321 (365)
.|+++- |.-...+...+.++..++++++|...|++++++- +.| ..+...|+.+....+++.+++
T Consensus 308 ~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 308 RALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 999763 3345688899999999999999999999999873 233 556777888888888877655
Q ss_pred HHHHhcccCCCC
Q 017811 322 KEIYKGIFGPRP 333 (365)
Q Consensus 322 k~~y~kmf~~~~ 333 (365)
.+|++.+....
T Consensus 388 -~~~k~ai~~~~ 398 (508)
T KOG1840|consen 388 -ELYKKAIQILR 398 (508)
T ss_pred -HHHHHHHHHHH
Confidence 45777755443
No 134
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.47 E-value=6.3e-07 Score=65.91 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=59.3
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+..+...|..++..|+|++|+..|++|+.+....... ......++.|+|.||..+|++++|+.+++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD----------HPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH----------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467788999999999999999999999999884221110 1123567999999999999999999999999
Q ss_pred HhC
Q 017811 260 LGE 262 (365)
Q Consensus 260 L~~ 262 (365)
+++
T Consensus 73 l~i 75 (78)
T PF13424_consen 73 LDI 75 (78)
T ss_dssp HHH
T ss_pred Hhh
Confidence 975
No 135
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.44 E-value=1.8e-05 Score=78.80 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
+++.+|++|..+|++++|+.+.++||+..|..+..|+.+|++|.+.|++.+|...+..|..+|+.|.-+.....+...+-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 56888999999999999999999999999999999999999999999999999999999999999988887776665555
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 017811 315 KAVYKKQKEIYKGIFGPRPE 334 (365)
Q Consensus 315 ~~~~~~~k~~y~kmf~~~~~ 334 (365)
.+.+++++ --++|-+...
T Consensus 276 ~~~e~A~~--~~~~Ftr~~~ 293 (517)
T PF12569_consen 276 GRIEEAEK--TASLFTREDV 293 (517)
T ss_pred CCHHHHHH--HHHhhcCCCC
Confidence 54443333 2345555554
No 136
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.44 E-value=1.8e-06 Score=82.87 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=63.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
..+.+..+.+.|..|++.|+|++|+..|++||++.|++... ..+|+|+|.||.++|++++|+.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA--------------~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA--------------QAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH--------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567889999999999999999999999999999986421 1359999999999999999999999
Q ss_pred HHHhCC
Q 017811 258 LVLGED 263 (365)
Q Consensus 258 ~aL~~~ 263 (365)
+||++.
T Consensus 137 rALels 142 (453)
T PLN03098 137 TALRDY 142 (453)
T ss_pred HHHHhc
Confidence 999984
No 137
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=6.4e-07 Score=81.58 Aligned_cols=143 Identities=13% Similarity=0.164 Sum_probs=108.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-------hhhHHHH-------HHHhh---chhhhHHHHHHHHhc
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-------FGKYRDM-------ALAVK---NPCHLNMAACLLKLK 247 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-------~~~~~~~-------~~~~~---~~~~~nla~~~~kl~ 247 (365)
+-.++..+-..+++++|+++|+.+++..|.+...-- -+...++ +..+. ..+++|+|.|.+-.+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 445777777888889999999999888876543100 0011111 11111 357999999999999
Q ss_pred CHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 248 RYEEAIGQCSLVLGEDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI 324 (365)
Q Consensus 248 ~~~~A~~~~~~aL~~~p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~ 324 (365)
+++-++..+.+|+..-. .-...||++|.+....|++.-|..+|+-||..||++.++...|..+..+.++-. ..|..
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~-~Arsl 451 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL-GARSL 451 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH-HHHHH
Confidence 99999999999997543 346799999999999999999999999999999999999999999976655543 34454
Q ss_pred Hhcc
Q 017811 325 YKGI 328 (365)
Q Consensus 325 y~km 328 (365)
+...
T Consensus 452 l~~A 455 (478)
T KOG1129|consen 452 LNAA 455 (478)
T ss_pred HHHh
Confidence 5443
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=1.1e-06 Score=65.75 Aligned_cols=77 Identities=22% Similarity=0.155 Sum_probs=68.1
Q ss_pred hcCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 246 LKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 246 l~~~~~A~~~~~~aL~~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
.++|+.|+..++++++.+|. +...++.+|.||+.+|+|++|+..+++ +..+|.+..+...++.|...+++++++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999999995 466788899999999999999999999 999999999999999999999998877665
No 139
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.33 E-value=2.1e-05 Score=65.16 Aligned_cols=113 Identities=22% Similarity=0.173 Sum_probs=88.5
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhh-----hhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLF-----GKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
..+...|......++...++..|.+++.+...+...+.. ...+..+......+...++.++...|++++|+..|.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344555667777788999999999999988664432222 244556677778889999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 258 ~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
.++.++|-+..++..+-.+|..+|++.+|+..|.++..
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987754
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=8.1e-06 Score=78.23 Aligned_cols=107 Identities=24% Similarity=0.186 Sum_probs=93.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
..|..+++.+++.+|++.+++++...|.... +..|+|.+|++.|++.+|+...+..+..+|++
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-----------------l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSPL-----------------LQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCccH-----------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 4777899999999999999999999998533 48899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
+..|..+|++|..+|+-.+|...+-..+.+..+-..+...+...
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999888888888888876655555544444
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=2.2e-05 Score=69.49 Aligned_cols=131 Identities=18% Similarity=0.099 Sum_probs=80.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHHHHH-------hh--chhhhHHHHHHHHhc
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDMALA-------VK--NPCHLNMAACLLKLK 247 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~~~~-------~~--~~~~~nla~~~~kl~ 247 (365)
.+-.|..+-..|+|++|+..|...|+-+|.+...-. .++..+.+.. +. ..++..+|..|+.+|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 345677788899999999999999998887643200 0111111111 11 135666677777777
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ---TDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 248 ~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~---~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
+|.+|+-++++++-+.|.|+-.+-|+|.+++-+|- +.-|.++|.++++++|.|......+-.|-..+.
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 77777777777777777777666677766666543 455666777777776655555444444443333
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.31 E-value=4.4e-06 Score=76.26 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=85.2
Q ss_pred hhhhHHHHHH-HHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHH
Q 017811 234 PCHLNMAACL-LKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARE 306 (365)
Q Consensus 234 ~~~~nla~~~-~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~ 306 (365)
...++.|..+ ++.|+|++|+..|...+...|++ +.++|++|.+|+..|+|++|+..|++++...|++ .++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3578888887 66799999999999999999998 5899999999999999999999999999999985 556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 307 LRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 307 l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
++.+...+++ ..+.+..|..+...-|+....
T Consensus 223 lg~~~~~~g~-~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGD-TAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHCcCCHHH
Confidence 6666655544 446667788888777765543
No 143
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.30 E-value=3e-05 Score=75.75 Aligned_cols=138 Identities=12% Similarity=0.021 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 255 (365)
Q Consensus 176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 255 (365)
..+.+.+...-.+|-..+..|+|..|.+...++.+..|.... .+.-.|.++..+|+++.|..+
T Consensus 78 ~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~-----------------~~llaA~aa~~~g~~~~A~~~ 140 (409)
T TIGR00540 78 GRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL-----------------NLIKAAEAAQQRGDEARANQH 140 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHH
Confidence 345667788888999999999999999999999988776422 255667777788888888888
Q ss_pred HHHHHhCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 017811 256 CSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP 331 (365)
Q Consensus 256 ~~~aL~~~p~n~-ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~ 331 (365)
+.++++..|++. .+...++.+++..|+++.|+..+++.++..|+|+.+...+..+....++..+.. ..+..+.+.
T Consensus 141 l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~-~~l~~l~k~ 216 (409)
T TIGR00540 141 LEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD-DIIDNMAKA 216 (409)
T ss_pred HHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHc
Confidence 888887777764 344446888888888888888888888888888888877777777776665433 335555444
No 144
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.1e-06 Score=81.60 Aligned_cols=87 Identities=15% Similarity=0.274 Sum_probs=70.1
Q ss_pred CCCCCEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCCCCCCCC
Q 017811 67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNV 146 (365)
Q Consensus 67 p~~g~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~~~~~~i 146 (365)
...||.|+|+|.|+.. |..|.+. ..+.+.|.||.| ++||||+.+|.||++|+...|.+.....|.....
T Consensus 158 a~~gD~v~IDf~g~iD--g~~fegg--~ae~~~l~lGs~-~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------ 226 (441)
T COG0544 158 AENGDRVTIDFEGSVD--GEEFEGG--KAENFSLELGSG-RFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------ 226 (441)
T ss_pred cccCCEEEEEEEEEEc--CeeccCc--cccCeEEEEcCC-CchhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence 7789999999999763 7888774 356799999999 9999999999999999998876655544543322
Q ss_pred CCCCcEEEEEEEEeeecCc
Q 017811 147 SPMADLVYEVVLIGFDETK 165 (365)
Q Consensus 147 p~~~~l~~~iel~~~~~~~ 165 (365)
.|....|.|.+..+....
T Consensus 227 -aGK~a~F~V~vkeVk~~e 244 (441)
T COG0544 227 -AGKEATFKVKVKEVKKRE 244 (441)
T ss_pred -CCCceEEEEEEEEEeecC
Confidence 567889999999887664
No 145
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.28 E-value=1.6e-05 Score=78.36 Aligned_cols=120 Identities=15% Similarity=0.052 Sum_probs=106.7
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+..+...+|..++|...++..+..|.-.|.+.+. +.-.|..+..+|+-++|...+..++..|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges-----------------lAmkGL~L~~lg~~~ea~~~vr~glr~d 71 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES-----------------LAMKGLTLNCLGKKEEAYELVRLGLRND 71 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh-----------------HHhccchhhcccchHHHHHHHHHHhccC
Confidence 45566777889999999999999999988876442 6667888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK 320 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~ 320 (365)
+.+.-+|.-+|..+..-.+|++|+++|+.|+.++|+|..+.+.+..++..++++.--
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999999999999999999999999999999998877776543
No 146
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.28 E-value=3.9e-05 Score=74.68 Aligned_cols=140 Identities=11% Similarity=-0.000 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 255 (365)
Q Consensus 176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 255 (365)
..+.+.+......|-..+..|+|..|.+...++-+..+.. .. .|...|.+..+.|+++.|..+
T Consensus 78 ~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l----------------~~llaA~aA~~~g~~~~A~~~ 140 (398)
T PRK10747 78 GRKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQP-VV----------------NYLLAAEAAQQRGDEARANQH 140 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccch-HH----------------HHHHHHHHHHHCCCHHHHHHH
Confidence 3466678888899999999999999997776655543221 10 144446666899999999999
Q ss_pred HHHHHhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811 256 CSLVLGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 333 (365)
Q Consensus 256 ~~~aL~~~p~n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~ 333 (365)
+.++.+.+|++.- .....+..+...|+++.|+..+++.++.+|+|+.+...+..++...++..+.. ..+..+-+...
T Consensus 141 l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~-~~l~~l~k~~~ 218 (398)
T PRK10747 141 LERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL-DILPSMAKAHV 218 (398)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHcCC
Confidence 9999999998854 44566999999999999999999999999999999999998888777765543 33555544433
No 147
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.27 E-value=8.3e-06 Score=77.73 Aligned_cols=99 Identities=15% Similarity=-0.001 Sum_probs=86.6
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..+...|..+...|++.+|+..|++++...|.+.. ++..+|.++...|++++|+..+.+++..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW-----------------AVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH-----------------HHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 34456778899999999999999999999998633 4889999999999999999999999998
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811 263 DENNV----KALFRRGKARAELGQTDAAREDFLKAGKFAP 298 (365)
Q Consensus 263 ~p~n~----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P 298 (365)
.|.+. ..++.+|.++..+|++++|+..|++++...|
T Consensus 178 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 178 WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 87432 4567899999999999999999999987777
No 148
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=1.8e-05 Score=72.24 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=103.1
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+...-+.|-...+|++||..-++...+.+.+..++ ....|+.||..++...+++.|.....+|++.|
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------IAQFYCELAQQALASSDVDRARELLKKALQAD 210 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC
Confidence 344566778888999999999998888887765432 24568999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHHHHHH
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KSIARELRLLAEHEKAVYK 319 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-~~~~~~l~~l~~~~~~~~~ 319 (365)
|+++.|-..+|++++..|+|..|++.++.+++-+|.. +++...|..|+..+.+-.+
T Consensus 211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999975 5677777777776665444
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.25 E-value=2.2e-05 Score=78.49 Aligned_cols=120 Identities=14% Similarity=0.019 Sum_probs=84.4
Q ss_pred HHHhhhhhhhhhhh---hhHHHHHHHHHHHHHhhccchhh--h----------hh---hhH----HHHHHH--------h
Q 017811 182 ADRRKMDGNALFKE---EKLEEAMQQYEMAIAYMGDDFMF--Q----------LF---GKY----RDMALA--------V 231 (365)
Q Consensus 182 a~~~k~~G~~~~~~---~~y~~A~~~y~~al~~~~~~~~~--~----------~~---~~~----~~~~~~--------~ 231 (365)
|-.+.-+|..++.. +.+..|+.+|++|+++.|+.... . .. +.. ...... .
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 44555677777654 44889999999999999985321 0 00 000 000000 0
Q ss_pred hchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302 (365)
Q Consensus 232 ~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~ 302 (365)
...+|.-+|..+...|++++|...+++|+.++| +..+|+.+|+++...|++++|...|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 113466677777788888888888888888888 5788888888888888888888888888888888764
No 150
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.23 E-value=1.5e-05 Score=83.66 Aligned_cols=112 Identities=10% Similarity=0.033 Sum_probs=92.2
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+...|..+...|+|.+|+..|+++++..|.+.. ++.-++.+|...+++++|+..+.+++..+
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~-----------------~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPD-----------------LISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 3444577888899999999999999999999744 36678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 313 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~ 313 (365)
|.+... .-++.++..++++.+|+..|+++++++|++.++...+-.+...
T Consensus 167 p~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 167 PTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred cchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 985554 4445555557778779999999999999999887776655443
No 151
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.21 E-value=1.2e-05 Score=78.44 Aligned_cols=132 Identities=12% Similarity=0.009 Sum_probs=103.1
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
........|..+...|+++.|+....++++..|++.... ...-+....+..++...++..+++++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~---------------~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS---------------LPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch---------------hHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 445556678889999999999999999999999863210 01222333445678899999999999
Q ss_pred hCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811 261 GEDENNV--KALFRRGKARAELGQTDAAREDFL--KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329 (365)
Q Consensus 261 ~~~p~n~--ka~~~~g~a~~~l~~~~~A~~~l~--~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf 329 (365)
+.+|+|+ ..+..+|.+++..|+|++|...|+ .+++.+|++.... .+..+....++..+ .+.+|++-+
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~-A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAE-AAAMRQDSL 397 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHH-HHHHHHHHH
Confidence 9999999 888899999999999999999999 6888999876644 88888777777544 466677643
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.21 E-value=2.5e-05 Score=62.48 Aligned_cols=89 Identities=20% Similarity=0.090 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---cHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELR 308 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~---n~~~~~~l~ 308 (365)
+.+++|.++-.+|+.++|+..|++++...... ..++..+|.++..+|++++|+..|++++.-.|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 58899999999999999999999999975444 679999999999999999999999999999898 777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 017811 309 LLAEHEKAVYKKQKE 323 (365)
Q Consensus 309 ~l~~~~~~~~~~~k~ 323 (365)
.+....++.++....
T Consensus 83 l~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 83 LALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHCCCHHHHHHH
Confidence 666665655554444
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=98.21 E-value=1.7e-05 Score=76.27 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHH---HhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh---------cCHHHHHHHHHHHHhCCCC
Q 017811 198 LEEAMQQYEMAI---AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL---------KRYEEAIGQCSLVLGEDEN 265 (365)
Q Consensus 198 y~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl---------~~~~~A~~~~~~aL~~~p~ 265 (365)
...|+.++.+|+ .+.|.. ..+|.-+|.||+.. .+-.+|.....+|+++||.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~-----------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLK-----------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHHHhhcccCCccc-----------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 457888888998 666553 44688889998876 2456788899999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
++.|++.+|.++...++++.|...|++|+.++|+...+....+.+...-++.. .......+.+..+|--...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~-~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE-EARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH-HHHHHHHHHhccCchhhHH
Confidence 99999999999999999999999999999999999999988888765555544 3444577777777644433
No 154
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.21 E-value=2.9e-06 Score=51.72 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
++|+++|.+|..+|++++|+..|++|++++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 566677777777777777777777777776653
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.20 E-value=1.4e-05 Score=74.09 Aligned_cols=110 Identities=22% Similarity=0.178 Sum_probs=86.0
Q ss_pred HHHHHhhhhhhhhhhh-hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~-~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 258 (365)
..|..+...|..+... ++++.|+..|++|+.+...... ......++.++|.++.++++|++|+..|.+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-----------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-----------PHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4566777888888888 9999999999999999765321 122356789999999999999999999999
Q ss_pred HHhCCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 259 VLGEDEN------NVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 259 aL~~~p~------n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
+....-+ +++ .+++.+.|++..|++..|...|++....+|.-
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8864321 344 55788999999999999999999999999964
No 156
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=2e-05 Score=82.31 Aligned_cols=135 Identities=14% Similarity=0.104 Sum_probs=98.1
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhh--chhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK--NPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
.+.-.|..++..+++..|... .++...+.+..+...+-....+.+.. ..+++.||.||-++|++++|...++++|+
T Consensus 67 ~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 67 ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 345577777888888877777 77777766543322222222111111 13689999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811 262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 336 (365)
Q Consensus 262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~ 336 (365)
+||+|+-++.++|..|... +.++|+..+.+|+...= ..++.......|.+++...++.-
T Consensus 145 ~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i---------------~~kq~~~~~e~W~k~~~~~~~d~ 203 (906)
T PRK14720 145 ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI---------------KKKQYVGIEEIWSKLVHYNSDDF 203 (906)
T ss_pred cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH---------------hhhcchHHHHHHHHHHhcCcccc
Confidence 9999999999999999999 99999999999988711 11233455666777776666543
No 157
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.18 E-value=7.3e-05 Score=66.65 Aligned_cols=143 Identities=13% Similarity=0.089 Sum_probs=108.2
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
+..+.+.|...+..|+|.+|++.|+......|..... ..+.+.++.++++.++|+.|+...++=+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--------------EQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--------------HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5678999999999999999999999999888875432 34588999999999999999999999999
Q ss_pred CCCCCHH---HHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHHHHHHH-------
Q 017811 262 EDENNVK---ALFRRGKARAELGQ--------TDAAREDFLKAGKFAPED---KSIARELRLLAEHEKAVYKK------- 320 (365)
Q Consensus 262 ~~p~n~k---a~~~~g~a~~~l~~--------~~~A~~~l~~al~l~P~n---~~~~~~l~~l~~~~~~~~~~------- 320 (365)
+.|.++. ++|-+|.++...=+ -.+|...|+..+...|+. +++...+..+..++..++-.
T Consensus 100 lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k 179 (254)
T COG4105 100 LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK 179 (254)
T ss_pred hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998764 88899998776533 367899999999999986 34444444444444443332
Q ss_pred ------HHHHHhcccCCCCCcccc
Q 017811 321 ------QKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 321 ------~k~~y~kmf~~~~~~~~~ 338 (365)
....++.|++.-++....
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred hcChHHHHHHHHHHHhccccccch
Confidence 233366677775544433
No 158
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.16 E-value=6.3e-06 Score=83.08 Aligned_cols=126 Identities=29% Similarity=0.419 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh--cCHH
Q 017811 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL--KRYE 250 (365)
Q Consensus 173 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--~~~~ 250 (365)
.+....+..+...+.+||.+|.+++|..|.-.|..++.+.|.+.. ....++.|.+.||+.+ ++|.
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-------------~~a~~~~~~~s~~m~~~l~~~~ 110 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-------------VVATLRSNQASCYMQLGLGEYP 110 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-------------hhhhHHHHHHHHHhhcCccchh
Confidence 355667888999999999999999999999999999999996432 1355789999999876 5999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 251 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 251 ~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
.++..|.-++...|...+++++++.+|..++.++-|+.++......+|++.++..-+..++
T Consensus 111 ~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 111 KAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred hhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999977666555443
No 159
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=1.3e-05 Score=73.26 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=75.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
..|..|++.|-+.+|...++.+|...|-.. .++-|+.+|.++.++..|+..+...|+.-|.+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~d------------------TfllLskvY~ridQP~~AL~~~~~gld~fP~~ 289 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------------------TFLLLSKVYQRIDQPERALLVIGEGLDSFPFD 289 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchh------------------HHHHHHHHHHHhccHHHHHHHHhhhhhcCCch
Confidence 578899999999999999999998877532 25666777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811 267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA 304 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~ 304 (365)
+..+.-.|+++.+++++++|++.|+.+++++|.|.++.
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEai 327 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAI 327 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceee
Confidence 77777777777777777777777777777777665444
No 160
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.15 E-value=2.9e-05 Score=76.73 Aligned_cols=110 Identities=21% Similarity=0.097 Sum_probs=91.3
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 258 (365)
...|..+.+.|..|.+.|+|.+|..+|.+|+++....... . ..-....+.|++..+..++++++|+.++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-----~----~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA-----S----HPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc-----C----hHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4667788899999999999999999999999998651110 0 111244589999999999999999999999
Q ss_pred HHhCC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 259 VLGED-----E---NNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 259 aL~~~-----p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
++++. + .-++.+-++|.+|+.+|+|.+|...|++|+.+.
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 98652 2 346889999999999999999999999999875
No 161
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.13 E-value=2.2e-06 Score=52.36 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=31.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017811 255 QCSLVLGEDENNVKALFRRGKARAELGQTDAAR 287 (365)
Q Consensus 255 ~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~ 287 (365)
.|+++|+++|+|+.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999996
No 162
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=2.1e-05 Score=78.63 Aligned_cols=105 Identities=17% Similarity=0.124 Sum_probs=88.5
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
..+...+|.-.+..++|.+|..+++..++++|-....||++|.|..+++++..|..+|..++.++|+|.++.+.+...+-
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 34444555555667999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 313 HEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 313 ~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
+.++..++-+. .+..++..-++++.
T Consensus 565 ~~~~k~ra~~~-l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 565 RLKKKKRAFRK-LKEALKCNYQHWQI 589 (777)
T ss_pred HHhhhHHHHHH-HHHHhhcCCCCCee
Confidence 77776655544 66667766666655
No 163
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=1.9e-05 Score=67.52 Aligned_cols=99 Identities=22% Similarity=0.161 Sum_probs=83.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811 239 MAACLLKLKRYEEAIGQCSLVLGEDENNV-----KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 313 (365)
Q Consensus 239 la~~~~kl~~~~~A~~~~~~aL~~~p~n~-----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~ 313 (365)
-|.-+++.|+|.+|...|..||++.|.-. -.|.++|.|++.++.++.|+.+..++++|+|.+..+....+.++..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 35567899999999999999999998754 3677999999999999999999999999999988777777777777
Q ss_pred HHHHHHHHHHHHhcccCCCCCcccc
Q 017811 314 EKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 314 ~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
...+. ..-..|++++..+|...+.
T Consensus 181 ~ek~e-ealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 181 MEKYE-EALEDYKKILESDPSRREA 204 (271)
T ss_pred hhhHH-HHHHHHHHHHHhCcchHHH
Confidence 75544 4556699999999976643
No 164
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=2.7e-05 Score=74.89 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=76.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV 267 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ 267 (365)
.+..++..++-.+|++...++|...|.+.. ++.-.|..+++.++++.|+..+++++.+.|.+.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~-----------------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSE-----------------LLNLQAEFLLSKKKYELALEIAKKAVELSPSEF 268 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH
Confidence 455566666777888888888877776532 366778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI 303 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~ 303 (365)
++|+.++.+|..+|+|+.|+..++.+--+-++++..
T Consensus 269 ~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~ 304 (395)
T PF09295_consen 269 ETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK 304 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence 999999999999999999998887654443344333
No 165
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.07 E-value=9.7e-06 Score=49.19 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
+++++.+|.++..+|+|++|+..|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3577788888888888888888888888888765
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.07 E-value=3.2e-05 Score=71.69 Aligned_cols=160 Identities=19% Similarity=0.084 Sum_probs=108.9
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 258 (365)
-..+..+..-|+.+-..++|.+|...|.+|..+...... ......+|.+.+.||.+. ++.+|+.++++
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~ 99 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD-----------KFEAAKAYEEAANCYKKG-DPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence 345667777788777889999999999999887653211 011245688889998766 99999999999
Q ss_pred HHhCC--CC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 259 VLGED--EN----NVKALFRRGKARAEL-GQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIY 325 (365)
Q Consensus 259 aL~~~--p~----n~ka~~~~g~a~~~l-~~~~~A~~~l~~al~l~P~n------~~~~~~l~~l~~~~~~~~~~~k~~y 325 (365)
|+.+. .+ -.+++.++|.+|... +++++|+..|++|+.+...+ ..+...+..+....+++.++ ...|
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A-~~~~ 178 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA-IEIY 178 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH-HHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH-HHHH
Confidence 98763 22 257999999999998 99999999999999974321 23445566676777777655 4447
Q ss_pred hcccCCCCCcc-----ccchhHHHHHHHHHH
Q 017811 326 KGIFGPRPEPK-----QKKNWLIIFWQLLVS 351 (365)
Q Consensus 326 ~kmf~~~~~~~-----~~~~~~~~~~~~~~~ 351 (365)
.++........ .+..++...+++|..
T Consensus 179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence 77644332222 224556666666654
No 167
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.06 E-value=4.8e-05 Score=76.49 Aligned_cols=135 Identities=13% Similarity=0.019 Sum_probs=112.8
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..+...+..+.+.++-++|..+..+|-.+.|.. ...|+-+|.++...|++.+|...|..|+.+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-----------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-----------------ASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-----------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 344556666667777888888999988887764 335899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 263 DENNVKALFRRGKARAELGQTDAARE--DFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l~~~~~A~~--~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
||+++..+.-+|.++...|+-.-|.. .+..++++||.|.+++..++.+.+.+++..++ ...|.-.+...+.+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A-aecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA-AECFQAALQLEESN 787 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH-HHHHHHHHhhccCC
Confidence 99999999999999999999777777 99999999999999999999999888887644 44476665555433
No 168
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.04 E-value=4.2e-06 Score=50.99 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
+|+++|.||+.+++|++|+.+|+++|+++|+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 59999999999999999999999999999974
No 169
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.04 E-value=5.1e-05 Score=73.85 Aligned_cols=125 Identities=14% Similarity=-0.025 Sum_probs=98.1
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.....+..+...|+++.|.....++++..+ +.. .-+...++..+++++++..++..++.+
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~-------------------l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER-------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH-------------------HHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 334557788899999999999999988433 211 111223334599999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 330 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~ 330 (365)
|+|+..++.+|++++..++|++|...|++++++.|++.... .+..+.....+..+. ...|++-+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~~~g~~~~A-~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALDRLHKPEEA-AAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHHHHh
Confidence 99999999999999999999999999999999999976634 688887777776655 555776544
No 170
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.03 E-value=6.3e-05 Score=70.87 Aligned_cols=115 Identities=11% Similarity=0.173 Sum_probs=93.1
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-hhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
........|..+|++++|..|+-.|..||++..+....+. .....+....+.+-+-..|..||+++++.+.|+....+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 3444556888999999999999999999999876433222 222233444555566789999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
+-++|.+..-+.|.|-|+..+.+|.+|...+.-+.-
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877766554
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.01 E-value=1.4e-05 Score=51.86 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~ 308 (365)
+++.+|.+|..+|++++|+..|+++++.+|+|..++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555566666666666666666666666666655555443
No 172
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.00 E-value=1.5e-05 Score=73.19 Aligned_cols=98 Identities=17% Similarity=0.049 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
+-..|.-|+++|.|++||.+|.+++..+|.|+-.+.+||.||+.+..|..|..+...|+.|+-....+.......+..++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999999999999999999998765555554444444444
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 017811 316 AVYKKQKEIYKGIFGPRPE 334 (365)
Q Consensus 316 ~~~~~~k~~y~kmf~~~~~ 334 (365)
... ..++.|...|...|.
T Consensus 180 ~~~-EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNM-EAKKDCETVLALEPK 197 (536)
T ss_pred hHH-HHHHhHHHHHhhCcc
Confidence 433 445568888777775
No 173
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00028 Score=62.62 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=74.5
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQC 256 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~ 256 (365)
...+.|.+.+..|+..|+|..|.-+|++.+-+.|-++.. +..+|.+++-+| ++.-|..+|
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~-----------------f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY-----------------FQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH-----------------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445578889999999999999999999999999987553 778888888776 788899999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 017811 257 SLVLGEDENNVKALFRRGKARAELGQTDAA 286 (365)
Q Consensus 257 ~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A 286 (365)
.++|+++|.|..++|-+-.|--++-+...+
T Consensus 215 ~~alkl~~~~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred HHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999888777666544433
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.94 E-value=0.00036 Score=61.34 Aligned_cols=115 Identities=19% Similarity=0.121 Sum_probs=88.2
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-----------CHHHH
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-----------RYEEA 252 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----------~~~~A 252 (365)
.....|..+++.|+|..|+..|++.+...|.+... ..+++.+|.|++++. ...+|
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~--------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA--------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH--------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 45678999999999999999999999999986442 235888888887764 34589
Q ss_pred HHHHHHHHhCCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 253 IGQCSLVLGEDENNVK-----------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 253 ~~~~~~aL~~~p~n~k-----------------a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
+..++..+...|++.- --+..|.-|...|.|..|+.-++.+++-.|+.+.+...+..+..
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 9999999999998742 22346888999999999999999999999998776665555444
No 175
>PRK11906 transcriptional regulator; Provisional
Probab=97.93 E-value=0.00014 Score=70.09 Aligned_cols=90 Identities=10% Similarity=-0.056 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG 274 (365)
Q Consensus 195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g 274 (365)
...-.+|.+.-.+|+++.+.|.. ++..+|.++...++++.|+..+++|+.++|+.+.++|..|
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~-----------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~ 379 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGK-----------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRA 379 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHH
Confidence 34556778888888888887744 4889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811 275 KARAELGQTDAAREDFLKAGKFAPEDK 301 (365)
Q Consensus 275 ~a~~~l~~~~~A~~~l~~al~l~P~n~ 301 (365)
..+...|+.++|...+.+|++++|.-.
T Consensus 380 ~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 380 LVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 999999999999999999999999743
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00013 Score=70.28 Aligned_cols=107 Identities=16% Similarity=0.042 Sum_probs=97.7
Q ss_pred hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG 274 (365)
Q Consensus 195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g 274 (365)
.++|+.|+..+++.....|.. ..-+|.+++..++-.+|+....++|...|.+...+.-.+
T Consensus 182 t~~~~~ai~lle~L~~~~pev--------------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa 241 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV--------------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQA 241 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH--------------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 467899999999988777652 456899999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811 275 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 321 (365)
Q Consensus 275 ~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~ 321 (365)
..++..++++.|+...+++..+.|++-..+..|..++...++++.+.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999988763
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.92 E-value=5.4e-05 Score=70.25 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=83.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH--hc--CHHHHHHHHHHHHhCCCC
Q 017811 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--LK--RYEEAIGQCSLVLGEDEN 265 (365)
Q Consensus 190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--l~--~~~~A~~~~~~aL~~~p~ 265 (365)
..+++.++++.|.+.++.+-++.++. +..++|.++.. .| .+.+|...|+......+.
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~-------------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDS-------------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCH-------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcH-------------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 35666777777777776665554332 35566554444 44 689999999998888788
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017811 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKG 327 (365)
Q Consensus 266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~k 327 (365)
+++.+..+|.|++.+|+|++|...++.++..+|+|+++...+..|....++......+....
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999999999999999999999999999998888877766666553334443333
No 178
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00014 Score=68.60 Aligned_cols=135 Identities=18% Similarity=0.130 Sum_probs=100.5
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh--------hhhh---hHHHHHHHhhchh------hhHHHHHHH
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFG---KYRDMALAVKNPC------HLNMAACLL 244 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~--------~~~~---~~~~~~~~~~~~~------~~nla~~~~ 244 (365)
..-+-..|..+|..|++.+|+..|+++..++|.+... ...+ ........+.... ++--+....
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 4456678999999999999999999999999875331 0000 0011111111111 222244455
Q ss_pred HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811 245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA 316 (365)
Q Consensus 245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~ 316 (365)
..++|..|+.+..++|..+|.|+.+|.-.|.++.++++.++|.-.|+.|..+.|.+-++...|-.++...+.
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 678999999999999999999999999999999999999999999999999999887777776666554433
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=7.7e-05 Score=67.07 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=86.4
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNV---KALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELRL 309 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~---ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n---~~~~~~l~~ 309 (365)
++|.|.-+++.|+|..|...|..=+...|++. .|+||+|.+++.+|+|++|...|..+.+-.|++ +++.-.|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 78999999999999999999999999999874 699999999999999999999999999998876 566666777
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 310 LAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 310 l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
+..++++.. ..+..|+.+.+.-|+....
T Consensus 224 ~~~~l~~~d-~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTD-EACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHH-HHHHHHHHHHHHCCCCHHH
Confidence 766665544 5566688888877776654
No 180
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.9e-05 Score=70.16 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=99.1
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
+..+...|..+|..++|..|+.+-.++|...|.+.. .|.--|..+..+++..+|+-.|+.|..
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~-----------------alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE-----------------ALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch-----------------HHHhccHHHHhccchHHHHHHHHHHHh
Confidence 344556777888899999999999999999887643 366667777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811 262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR-LLAEHEKAVYKKQKEIYKGIFGPRPEPK 336 (365)
Q Consensus 262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~-~l~~~~~~~~~~~k~~y~kmf~~~~~~~ 336 (365)
+.|..-..|--+-.+|++.|.+.+|...-+.++..-|++......++ .+..---.-+++.|+.|.+-+...|+-.
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 77777777777777777777777777777777777777777666664 3322222334466777777777777544
No 181
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.91 E-value=2.1e-05 Score=51.08 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA 276 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a 276 (365)
+++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 488999999999999999999999999999999999998863
No 182
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=2.4e-05 Score=67.75 Aligned_cols=75 Identities=16% Similarity=0.036 Sum_probs=69.5
Q ss_pred hchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 017811 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE 306 (365)
Q Consensus 232 ~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~ 306 (365)
+..+++.+|..|-.+|-|.-|..+++++|.+.|.-+.++..+|.-+..-|+|+.|.+.|..++++||.+.-+...
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 566799999999999999999999999999999999999999999999999999999999999999997655544
No 183
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.88 E-value=0.00025 Score=70.81 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
+++|.+|+.|..+|++++|+..+.+|+...|...+.....+++.++.++..++...
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 68899999999999999999999999999999999999999998888887776654
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=9.7e-05 Score=73.99 Aligned_cols=36 Identities=6% Similarity=-0.164 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA 269 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka 269 (365)
..|..+|.++...|++++|+..|.+|+.++|.++.-
T Consensus 454 ~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 454 LNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 358899999999999999999999999999998863
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.86 E-value=0.00012 Score=75.58 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=104.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh-------hhhHHHHHHH------------hhchhhhHHHHHHHHhcC
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-------FGKYRDMALA------------VKNPCHLNMAACLLKLKR 248 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~-------~~~~~~~~~~------------~~~~~~~nla~~~~kl~~ 248 (365)
.|..|-..-+..+|..+|.+|.++++.+..... ...+.++... ...-.+..+|..|++.++
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n 577 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHN 577 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccc
Confidence 555555555777899999999999887543211 0111121111 112234558999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
+..|+..++.+|..+|.+..+|.-+|.+|...|.|.-|++.|.+|..++|.+.-.+.....+.....++++....
T Consensus 578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888877777777777665433
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=97.84 E-value=9.9e-05 Score=61.66 Aligned_cols=94 Identities=12% Similarity=-0.108 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
.+..|.-++..|++++|...|+-...+||.|.+.++-+|-|+..+++|++|+..|-.|..++++|+...-..+.|...++
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhcccC
Q 017811 316 AVYKKQKEIYKGIFG 330 (365)
Q Consensus 316 ~~~~~~k~~y~kmf~ 330 (365)
+...+... |.-...
T Consensus 120 ~~~~A~~~-f~~a~~ 133 (165)
T PRK15331 120 KAAKARQC-FELVNE 133 (165)
T ss_pred CHHHHHHH-HHHHHh
Confidence 87766554 655555
No 187
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.84 E-value=0.0011 Score=52.06 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=78.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh----
Q 017811 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG---- 261 (365)
Q Consensus 186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~---- 261 (365)
...|...+..|-|.+|...|++|.......+.-+-. +. ..+-.-||..|+.++..+|+|++++.....+|.
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaF--Dh---~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAF--DH---DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-----H---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhc--cc---ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 346667788899999999999999886442210000 01 222345899999999999999999999999883
Q ss_pred ---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 262 ---EDEN----NVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 262 ---~~p~----n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
++.+ .+.+.|++|.++..+|+.++|+..|+++-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4444 4668999999999999999999999988653
No 188
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.83 E-value=0.00013 Score=49.15 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
..+|.+|.++..+|+|++|......+|+++|+|..+......+..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999888877777655443
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.00059 Score=61.76 Aligned_cols=70 Identities=13% Similarity=-0.033 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK---ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA 304 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k---a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~ 304 (365)
.++..|.-++..|+|++|+..++.++...|.... +.+++|.+|+.+++|++|+..+++.++++|+++.+-
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 3778999999999999999999999999998865 459999999999999999999999999999875443
No 190
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.81 E-value=0.00031 Score=56.15 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=70.9
Q ss_pred hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HH---HHHHHHHHHH
Q 017811 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KS---IARELRLLAE 312 (365)
Q Consensus 237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-~~---~~~~l~~l~~ 312 (365)
---|.+....|+.+.|++.|.++|.+-|.++.+|.++++++.-.|+.++|+.++.+|+++.... .. +.-+.+.+++
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3446778889999999999999999999999999999999999999999999999999997543 22 2222344433
Q ss_pred HHHHHHHHHHHHHhcc
Q 017811 313 HEKAVYKKQKEIYKGI 328 (365)
Q Consensus 313 ~~~~~~~~~k~~y~km 328 (365)
+.....+.|..|...
T Consensus 127 -l~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 127 -LLGNDDAARADFEAA 141 (175)
T ss_pred -HhCchHHHHHhHHHH
Confidence 334445566666655
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.77 E-value=0.00068 Score=57.55 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=88.0
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhc-cchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMG-DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
.....|+.+...|+|.+|..+|.+++.-.= .+ ..+++.+|.+++.++++..|....+++.+.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-----------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHD-----------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-----------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 456789999999999999999999986432 22 224889999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811 263 DEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301 (365)
Q Consensus 263 ~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~ 301 (365)
+|. .+..+.-.|++|..+|.+.+|...|+.++...|+-.
T Consensus 154 ~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 154 NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 885 577888999999999999999999999999998743
No 192
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.77 E-value=0.00043 Score=68.61 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=84.4
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
-.|+..|-.+-..++|.+||++|+.|+.+.++|.. ++.-+|..+.++++|+-....-.+.|++
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q-----------------ilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ-----------------ILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 35778888888999999999999999999998733 4888899999999999999988899999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 263 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
.|.+--.|+-.|.++.-+|+|..|...++...+..
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988887776655544
No 193
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.74 E-value=4.1e-05 Score=46.34 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
+++++|.+|+++|+|++|+.+|++++.++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 58999999999999999999999999999986
No 194
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0017 Score=64.48 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=90.5
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
-+.+.+..+|+..+|..|++.|...+...|.|... ....++.-+++.||+++.+.+.|.+++..|-+.|
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~-----------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS-----------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 45678899999999999999999999999876432 1226678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
|.++-.-+..-++...-+.-++|+..+.+.....
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999999999999999999999999988877653
No 195
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.70 E-value=0.00019 Score=66.65 Aligned_cols=92 Identities=23% Similarity=0.268 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 017811 197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA 276 (365)
Q Consensus 197 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a 276 (365)
+|.+|...|+......+.. ..+++.+|.|++.+|+|++|...+.+++..+|+++.++.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t-----------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGST-----------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp CCCHHHHHHHHHHCCS--S-----------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCC-----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 5889999999966554433 23478899999999999999999999999999999999999999
Q ss_pred HHHcCCH-HHHHHHHHHHHhhCCCcHHHHH
Q 017811 277 RAELGQT-DAAREDFLKAGKFAPEDKSIAR 305 (365)
Q Consensus 277 ~~~l~~~-~~A~~~l~~al~l~P~n~~~~~ 305 (365)
...+|+- +.+...+.+....+|+++-+..
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 9999998 6677788888889999875543
No 196
>PRK10941 hypothetical protein; Provisional
Probab=97.69 E-value=0.00043 Score=63.30 Aligned_cols=80 Identities=21% Similarity=0.133 Sum_probs=71.8
Q ss_pred hhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 231 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 231 ~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
+....+.|+=.+|++.++|..|+.+++.+|.++|+++--+--||.+|.++|.+..|..+|+..++..|+++.+......+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 44556889999999999999999999999999999999999999999999999999999999999999988766444443
No 197
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.68 E-value=0.00013 Score=71.37 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=95.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 268 (365)
Q Consensus 189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k 268 (365)
|--+-..|+-..|+.+...|+...|..... ...|||.+.++.+-...|-..+.++|.+....+-
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v----------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl 677 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDV----------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPL 677 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcc----------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch
Confidence 333445789999999999999888763222 2789999999999999999999999999988899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
.+|-+|++++.+.+.+.|++.|+.|++++|++..+...|..+..
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999887754
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.65 E-value=7.8e-05 Score=70.18 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=85.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
+......+-+.||.|+-.|+|+.||..-+.-|.+... |+. ......++.|+|.||+-+|+|+.|+++|+
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---fGD--------rAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---FGD--------RAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---hhh--------HHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 4455556778999999999999999998887776532 111 11124569999999999999999999999
Q ss_pred HHHh----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811 258 LVLG----EDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298 (365)
Q Consensus 258 ~aL~----~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P 298 (365)
..+. +... -+..-|.+|.+|.-+.+|+.|+.++++-|.+.-
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8654 3332 346789999999999999999999998877643
No 199
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.65 E-value=8.7e-05 Score=44.94 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
++|+.+|.+|..+|++++|...|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 567777788888888888888888887777743
No 200
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0076 Score=53.06 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=100.7
Q ss_pred Hhhhhhhhhhhh-hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 184 RRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 184 ~~k~~G~~~~~~-~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
.+...|..|-.. .++..||.+|++|-+....+.. .....+|++..|..-..+++|.+|+..|.++...
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-----------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-----------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544 7888999999999888765322 3345678999999999999999999999998764
Q ss_pred CCCC------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCC
Q 017811 263 DENN------VKA-LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK---GIFGPR 332 (365)
Q Consensus 263 ~p~n------~ka-~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~---kmf~~~ 332 (365)
.-+| +|- ++..|.|++-..+.-.|...+++..+++|...+.+ +.+.++..+...++.....|. +-|+.-
T Consensus 184 s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR-Eckflk~L~~aieE~d~e~fte~vkefDsi 262 (288)
T KOG1586|consen 184 SLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR-ECKFLKDLLDAIEEQDIEKFTEVVKEFDSI 262 (288)
T ss_pred hccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH-HHHHHHHHHHHHhhhhHHHHHHHHHhhhcc
Confidence 4333 444 45778888888999999999999999999865444 223333333333333334444 234333
Q ss_pred CCccccchhHHHHHHHHHHHHHHHH
Q 017811 333 PEPKQKKNWLIIFWQLLVSLVLGLF 357 (365)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (365)
. ..-.|..++.+.+=
T Consensus 263 s----------rLD~W~ttiLlkiK 277 (288)
T KOG1586|consen 263 S----------RLDQWKTTILLKIK 277 (288)
T ss_pred c----------hHHHHHHHHHHHHH
Confidence 3 33456666655543
No 201
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.61 E-value=0.00079 Score=66.94 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=106.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh-------hhhhhHHHHHHHhhc---------hhhhHHHHHHHHhcC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLFGKYRDMALAVKN---------PCHLNMAACLLKLKR 248 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~-------~~~~~~~~~~~~~~~---------~~~~nla~~~~kl~~ 248 (365)
+..-+..++..|+...|......|++..|..... .....+.+....+.. .+|+.-+...--+++
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 3344556677788888888888888888764321 011112222222222 345555666666889
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 328 (365)
Q Consensus 249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km 328 (365)
.++|+..|+.+|+..|...|.|..+|+++..+++.+.|...|...++..|+.....-.|..+.++.. ..-+.|..+.+.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildra 745 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988877665 444555656555
Q ss_pred cCCCC
Q 017811 329 FGPRP 333 (365)
Q Consensus 329 f~~~~ 333 (365)
.-..|
T Consensus 746 rlkNP 750 (913)
T KOG0495|consen 746 RLKNP 750 (913)
T ss_pred HhcCC
Confidence 43333
No 202
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.60 E-value=0.00023 Score=73.56 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=98.1
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+..+|-.+.+.+++..|+..++.|++..|.+.. ++..+|.+|...|.|..|+..+++|..++
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n-----------------~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN-----------------LWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHH-----------------HHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 4556899999999999999999999999999754 48999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
|.+.-+.|..+.....+|+|.+|+..+...+.....-..++..+..+.
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999999999998887655555555555443
No 203
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00043 Score=64.14 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=77.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH
Q 017811 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA 269 (365)
Q Consensus 190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka 269 (365)
..+..+.+|..|+...+-.+...... + ..+-+.+|.|++++|+|++|+..|+.+...+..+.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EE-------E---------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el 93 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREE-------E---------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL 93 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhh-------h---------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence 34567789999999887776433211 0 2346789999999999999999999999988889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811 270 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308 (365)
Q Consensus 270 ~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~ 308 (365)
..++|.|+.-+|.|.+|...-.+| |+++-..+.+-
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlf 128 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLF 128 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHH
Confidence 999999999999999998776655 55544444433
No 204
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.53 E-value=0.0014 Score=65.18 Aligned_cols=126 Identities=16% Similarity=0.032 Sum_probs=103.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 017811 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 265 (365)
Q Consensus 186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~ 265 (365)
...++...-.++.++|++++++||+.+|.. .++|+-+|+++-++++.+.|...|...++..|.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f-----------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPDF-----------------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCch-----------------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 334455556788889999999999999875 345999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 328 (365)
Q Consensus 266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km 328 (365)
.+-.|.-+++.-...|..-.|...|.++.-.+|+|....-+.-+...+.+....++-.|-+.+
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877666665555555544444443333
No 205
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0004 Score=61.06 Aligned_cols=85 Identities=18% Similarity=0.091 Sum_probs=75.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 017811 239 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY 318 (365)
Q Consensus 239 la~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~ 318 (365)
-|.+++.-..|..|+..|.++|.++|..+..|-+++.||+++.+|+.+..+-++|++++|+.......++.+....+.+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35677788899999999999999999999999999999999999999999999999999999888888888877777666
Q ss_pred HHHHH
Q 017811 319 KKQKE 323 (365)
Q Consensus 319 ~~~k~ 323 (365)
+..+.
T Consensus 96 eaI~~ 100 (284)
T KOG4642|consen 96 EAIKV 100 (284)
T ss_pred HHHHH
Confidence 65544
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.44 E-value=0.00074 Score=55.21 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA 304 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~ 304 (365)
.+++-|...++.|+|.+|+..++.+....|-. ..|.+.+|.+|+..++|++|+..+++-++|+|.++.+-
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 38899999999999999999999999988865 57999999999999999999999999999999986543
No 207
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.42 E-value=0.00012 Score=44.53 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=29.8
Q ss_pred HHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811 204 QYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (365)
Q Consensus 204 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 253 (365)
+|++||++.|++.. +|+|+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~-----------------a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAE-----------------AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHH-----------------HHHHHHHHHHHCcCHHhhc
Confidence 48999999999855 4999999999999999986
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.42 E-value=0.00068 Score=64.02 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=83.0
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..+.+.||.+.-.|+|..|+++|++++.+...-. + ..+-....+.||..|.-+++|++||.+..+-|.+
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg-----~------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG-----N------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-----c------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999887653210 0 1112334788999999999999999999987755
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 263 DE------NNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 263 ~p------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
.. .-..|+|.+|.+|-.+|+.+.|+....+.+++
T Consensus 305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 32 35679999999999999999999988888776
No 209
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0033 Score=61.96 Aligned_cols=118 Identities=20% Similarity=0.192 Sum_probs=86.5
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHH-------H-------HhhchhhhHHHHHHHHhcCH
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMA-------L-------AVKNPCHLNMAACLLKLKRY 249 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~-------~-------~~~~~~~~nla~~~~kl~~~ 249 (365)
.+.-+|..+++.++|++|+..|+..++...++.+......-.... . +--..+++|.|..++..|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 455688999999999999999999988776654422211100000 0 00124689999999999999
Q ss_pred HHHHHHHHHHHhC-------CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811 250 EEAIGQCSLVLGE-------DENN--------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301 (365)
Q Consensus 250 ~~A~~~~~~aL~~-------~p~n--------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~ 301 (365)
.+|++.+.+++.+ +..+ .-....++.++..+|+-.+|.+.|...++.+|-|.
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 9999999988432 2222 12566789999999999999999999999988764
No 210
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.37 E-value=0.00051 Score=46.27 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 275 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~ 275 (365)
+++.+|..++++|+|.+|..+++.+|+++|+|..|.--...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 58899999999999999999999999999999987654443
No 211
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.0047 Score=52.93 Aligned_cols=100 Identities=20% Similarity=0.158 Sum_probs=79.1
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.....+..++..++++.|+...+.++..-.+ ..+..-+-.+||.+++.+|.+++|+...+..-.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D--------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-- 154 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD--------------ENLKALAALRLARVQLQQKKADAALKTLDTIKE-- 154 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh--------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--
Confidence 3446777889999999999999999865433 223445678999999999999999887665433
Q ss_pred CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 264 ENNVK--ALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 264 p~n~k--a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
.+.. ..-.+|.++..+|+-++|+..|.+++..++++
T Consensus 155 -~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 155 -ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred -ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3333 36689999999999999999999999998553
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.31 E-value=0.00025 Score=42.85 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
+|+++|.+|..+|++++|+.+++++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999964
No 213
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.012 Score=53.78 Aligned_cols=111 Identities=23% Similarity=0.235 Sum_probs=85.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH------
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL------ 258 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~------ 258 (365)
...++..+...+++..|...+..++...|.+.. +.+-+|.||+..|+.+.|...+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~-----------------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSE-----------------AKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccch-----------------HHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 456788899999999999999999999988633 477888888888888666554432
Q ss_pred ----------------------------HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHH
Q 017811 259 ----------------------------VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELR 308 (365)
Q Consensus 259 ----------------------------aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~ 308 (365)
.+..||++..+-+.+|..+...|++++|++.|-..++.+-. |..+++.|-
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 23447889999999999999999999999888888877653 455666555
Q ss_pred HHHH
Q 017811 309 LLAE 312 (365)
Q Consensus 309 ~l~~ 312 (365)
.+..
T Consensus 280 e~f~ 283 (304)
T COG3118 280 ELFE 283 (304)
T ss_pred HHHH
Confidence 5444
No 214
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0026 Score=59.10 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=83.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH-----
Q 017811 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL----- 260 (365)
Q Consensus 186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL----- 260 (365)
.-.|..+|..|+|++|+..|+-+.+....+ ..+..|||.|++-+|.|.+|.....++-
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~-----------------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~ 123 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAP-----------------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLC 123 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCC-----------------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHH
Confidence 346889999999999999999887743332 2346777777777777777766544331
Q ss_pred ---------hCCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811 261 ---------GEDE------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 319 (365)
Q Consensus 261 ---------~~~p------------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~ 319 (365)
+++. +...-...+|.+++..-.|.+|+..|+++|.-+|+-..+...++.|.-++.-+.
T Consensus 124 ~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd- 202 (557)
T KOG3785|consen 124 IRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD- 202 (557)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh-
Confidence 1110 111223345556666666777777777777777776666666666655443222
Q ss_pred HHHHHHhcccCCCCCccccch
Q 017811 320 KQKEIYKGIFGPRPEPKQKKN 340 (365)
Q Consensus 320 ~~k~~y~kmf~~~~~~~~~~~ 340 (365)
-........+.+-|+++-...
T Consensus 203 vsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 203 VSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred hHHHHHHHHHHhCCCcHHHHH
Confidence 223334444555565555544
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0072 Score=59.63 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=88.4
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhh--------hhhHHHHHHHh-------hchh-hhHHHHHHHHh
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDMALAV-------KNPC-HLNMAACLLKL 246 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~~~~~-------~~~~-~~nla~~~~kl 246 (365)
..+...-|.+...++|++|.....+.+...|++...-. .+...+.+..+ .... .+-.|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 45566667788899999999999999999887654211 11222222111 1112 26889999999
Q ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811 247 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302 (365)
Q Consensus 247 ~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~ 302 (365)
++.++|+.+++ .+++...+.+.-+|+.++.+++|++|+..|+..++-+-++-+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 99999999988 677788999999999999999999999999999887665443
No 216
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00038 Score=58.52 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=36.1
Q ss_pred eecCCCCchhhhHHHHHhcCCcCcEEEEEeccccccCCCCC
Q 017811 100 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS 140 (365)
Q Consensus 100 f~lg~~~~~i~g~e~~l~~Mk~GE~~~~~i~~~~~yg~~g~ 140 (365)
|.+|.+ .||+|++.+|.+|+.||+..+++||+++||..+.
T Consensus 1 ~~~g~~-~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 1 FTLGQG-FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred Ccccce-EEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 467888 7999999999999999999999999999996543
No 217
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.16 E-value=0.0026 Score=59.35 Aligned_cols=139 Identities=23% Similarity=0.319 Sum_probs=101.9
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchh-h----------hhhhhHHHH---------------HHHhhch
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-F----------QLFGKYRDM---------------ALAVKNP 234 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~-~----------~~~~~~~~~---------------~~~~~~~ 234 (365)
.+......|..++...++.+|+..+.+.|..+.+-.. | ...+...++ -..+...
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999999999999887654211 0 001111111 1234456
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH------H
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-----KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS------I 303 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~-----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~------~ 303 (365)
+|.|++..+-++.+|.+++.+++..+.+....+ .++..+|.|+..++.|+.+++.|++|+++.-++.+ +
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 799999999999999999999999998764443 68888999999999999999999999998766543 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 017811 304 ARELRLLAEHEKAVYK 319 (365)
Q Consensus 304 ~~~l~~l~~~~~~~~~ 319 (365)
--.|..+..+++++.+
T Consensus 165 cv~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEK 180 (518)
T ss_pred hhhHHHHHHHHHhhhH
Confidence 3345555556665543
No 218
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.16 E-value=0.0031 Score=50.67 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=66.2
Q ss_pred chhhhHHHHHHHHhcC---HHHHHHHHHHHHh-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811 233 NPCHLNMAACLLKLKR---YEEAIGQCSLVLG-EDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 307 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~---~~~A~~~~~~aL~-~~p~-n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l 307 (365)
..+.+|+|.|+.+..+ ..+.+..++..++ -.|. .-..+|.+|..++.+++|+.|+.+....|+.+|+|..+...-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4568999999998764 5677888888886 4443 456999999999999999999999999999999999888766
Q ss_pred HHHHH
Q 017811 308 RLLAE 312 (365)
Q Consensus 308 ~~l~~ 312 (365)
..+..
T Consensus 112 ~~ied 116 (149)
T KOG3364|consen 112 ETIED 116 (149)
T ss_pred HHHHH
Confidence 66543
No 219
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.14 E-value=0.017 Score=49.02 Aligned_cols=133 Identities=28% Similarity=0.245 Sum_probs=74.4
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHH-HHHHhcCHHHHHHHHHHHHh
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA-CLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~aL~ 261 (365)
..+...|..+...+.|..|+..+..++...+.... .....+. ++...++++.|+..+.+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDL-----------------AEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445556666666666666666666665544311 1222222 66677777777777777766
Q ss_pred CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811 262 EDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 333 (365)
Q Consensus 262 ~~p---~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~-n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~ 333 (365)
.+| .....++.++..+...++++.|+..+.+++...|. .......+..+....... ......+...+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~ 233 (291)
T COG0457 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY-EEALEYYEKALELDP 233 (291)
T ss_pred cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH-HHHHHHHHHHHhhCc
Confidence 665 34555666666666667777777777777777666 455555555444333322 223333444444444
No 220
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.12 E-value=0.0024 Score=54.10 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH---
Q 017811 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT----------DAAREDFLKAGKFAPEDKSIARELRLLAEHEK--- 315 (365)
Q Consensus 249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~----------~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~--- 315 (365)
|+.|...+......+|.++.+++|-|.+++.+.++ ++|+.-|+.||.++|+..++...++.....+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999999998664 77999999999999999888888777655333
Q ss_pred -------HHHHHHHHHHhcccCCCCCccc
Q 017811 316 -------AVYKKQKEIYKGIFGPRPEPKQ 337 (365)
Q Consensus 316 -------~~~~~~k~~y~kmf~~~~~~~~ 337 (365)
.+-++....|.+....+|.+.-
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 3344556667777777776543
No 221
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0093 Score=53.52 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=89.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhcc--chhhh----hhhhHHHHHHHhh----chhhhHHHHHHHHh----cCHHHH
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGD--DFMFQ----LFGKYRDMALAVK----NPCHLNMAACLLKL----KRYEEA 252 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~--~~~~~----~~~~~~~~~~~~~----~~~~~nla~~~~kl----~~~~~A 252 (365)
.-|..+...++|++|++.......+.-. +.... ..+-....+..+. -..+..||.++.++ +++..|
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhH
Confidence 3566777888888888877663222110 00000 0000011111111 12355577777775 368888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811 253 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 319 (365)
Q Consensus 253 ~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~ 319 (365)
.-.|...-+..|.++..+.-.+.|++.+++|++|...++.+|..++++++....+-.+....+.-.+
T Consensus 193 fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 193 FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 8888888887777999999999999999999999999999999999999988888777665555433
No 222
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.06 E-value=0.001 Score=39.67 Aligned_cols=31 Identities=35% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
|+|++|.++..+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666666666666666666666666666664
No 223
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.05 E-value=0.023 Score=53.62 Aligned_cols=128 Identities=12% Similarity=-0.027 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH
Q 017811 175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 254 (365)
Q Consensus 175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~ 254 (365)
...+...|...-..|-..+..|+|.+|.+.-.++-+.-+.. ..+|.--|.+-..+|+++.|=.
T Consensus 77 ~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-----------------~l~~l~aA~AA~qrgd~~~an~ 139 (400)
T COG3071 77 SRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-----------------VLAYLLAAEAAQQRGDEDRANR 139 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-----------------HHHHHHHHHHHHhcccHHHHHH
Confidence 34567788888899999999999999999999877665442 2235566677777888888888
Q ss_pred HHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811 255 QCSLVLGEDE-NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 319 (365)
Q Consensus 255 ~~~~aL~~~p-~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~ 319 (365)
+..++-+..+ ++.-++..++..+...++++.|...+..+++..|.++.+......++.+.+++..
T Consensus 140 yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 140 YLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 8888777733 3556677788888888888888888888888888888777777777666666544
No 224
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.04 E-value=0.033 Score=57.57 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=90.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHH
Q 017811 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL 270 (365)
Q Consensus 191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~ 270 (365)
.....++|..|+....+.++..|+...+ ..--|..+.++|++++|....+..-...+++.-.+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a-----------------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYA-----------------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL 80 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHH-----------------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH
Confidence 3456788999999999999999875322 44557899999999999955555555667788888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 017811 271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK 322 (365)
Q Consensus 271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k 322 (365)
--+-.+|..++++++|...|++++..+|+ .+....+=.++.+.+.+.+.++
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999 6666666666666665554433
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.98 E-value=0.017 Score=49.02 Aligned_cols=129 Identities=27% Similarity=0.323 Sum_probs=94.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC-CHHH
Q 017811 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-NVKA 269 (365)
Q Consensus 191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~-n~ka 269 (365)
.++..+++..|+..|.+++...+.... ....+.+++..+...+++..|+..+..++...+. ...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 204 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE--------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc--------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHH
Confidence 788999999999999999885542000 1223556666688899999999999999999999 7999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811 270 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 334 (365)
Q Consensus 270 ~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~ 334 (365)
++.++.++...++++.|...+..++...|........+..... ...........+.+.+...+.
T Consensus 205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999985444444444433 222223333334444444443
No 226
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.97 E-value=0.0016 Score=62.82 Aligned_cols=115 Identities=17% Similarity=0.004 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
+-+-|.-.++-+.|+.|+..|.+||+++|+++-.+-.|+.++...++|..|+.++.+|++++|....+....+...-+..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 45667788899999999999999999999999999999999999999999999999999999986544433333333444
Q ss_pred HHHHHHHHHHhcccCCCCCccccchhHHHHHHHHHHHHHH
Q 017811 316 AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLG 355 (365)
Q Consensus 316 ~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (365)
+..++.+. |.+.....| ...+....+..|-.++..
T Consensus 87 ~~~~A~~~-l~~~~~l~P----nd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 87 EFKKALLD-LEKVKKLAP----NDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHH-HHHhhhcCc----CcHHHHHHHHHHHHHHHH
Confidence 44433333 555444333 344455666777777766
No 227
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0078 Score=53.93 Aligned_cols=117 Identities=18% Similarity=0.093 Sum_probs=92.6
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc-chhhhh--------------hhhHHH-------HHHH--hhchhhhHH
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGD-DFMFQL--------------FGKYRD-------MALA--VKNPCHLNM 239 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~-~~~~~~--------------~~~~~~-------~~~~--~~~~~~~nl 239 (365)
-+.-..+.+.-.+.|.-.+..|.+.++.+|. ++.... .....+ .+.. ....++-|.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566788889999999999999999998853 221100 001111 1111 123467888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 240 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 240 a~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
+.+|+-.++|..|...+++++..||.++-+..+.|.|++.+|+..+|++.+..++...|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999973
No 228
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.90 E-value=0.0011 Score=39.48 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
+++++|.||.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 48899999999999999999999999999975
No 229
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.81 E-value=0.0019 Score=37.25 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=14.8
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
++++|.|+..+++++.|+..+..++.++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44555555555555555555555555444
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.80 E-value=0.0022 Score=36.90 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
.+++++|.++..+++++.|...|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999999864
No 231
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.019 Score=53.13 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=60.1
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
|..+.+++...+-.|+|..|+..+.+|+.+.|.+ .++|+.=|.|++.++.+..|...|+..+.
T Consensus 119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-----------------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 119 AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-----------------LKAYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-----------------hhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 4567788888889999999999999999999985 56799999999999999999999999987
Q ss_pred CCCCC
Q 017811 262 EDENN 266 (365)
Q Consensus 262 ~~p~n 266 (365)
++-.+
T Consensus 182 ~d~e~ 186 (390)
T KOG0551|consen 182 IDDEA 186 (390)
T ss_pred hhHHH
Confidence 77543
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.76 E-value=0.0016 Score=40.11 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
|.+||.+|.++|+|++|+.+|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 233
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.017 Score=51.25 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=80.4
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHh--------CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLG--------EDENN----------VKALFRRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~--------~~p~n----------~ka~~~~g~a~~~l~~~~~A~~~l~~al 294 (365)
+.++...|.-++++|+|.+|...|..|+. ..|.. .-.+.++++|++..++|-++++.-..+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45688889999999999999999998862 34443 3478899999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 017811 295 KFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 337 (365)
Q Consensus 295 ~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~ 337 (365)
..+|.|..+....++.+. -.......+..+.+.+..+|....
T Consensus 258 ~~~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHH
Confidence 999998766654444322 222334567779999998885443
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.71 E-value=0.0031 Score=38.78 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
||.++|.+|..+|+|++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 68899999999999999999999966553
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.71 E-value=0.07 Score=47.87 Aligned_cols=127 Identities=14% Similarity=0.043 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH--HHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR--ELRL 309 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~--~l~~ 309 (365)
-+++-|...+.-|+|.+|+..++.+....|.+ .++..-++.+++..++|++|+..+.+-+.+.|.++.+-. .|.-
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 48899999999999999999999999988765 589999999999999999999999999999998754432 2222
Q ss_pred HHH--------HHHHHHHHHHHHHhcccCCCCCcccc------chhHHHHHHHHHHHHHHHHhhhc
Q 017811 310 LAE--------HEKAVYKKQKEIYKGIFGPRPEPKQK------KNWLIIFWQLLVSLVLGLFKRKR 361 (365)
Q Consensus 310 l~~--------~~~~~~~~~k~~y~kmf~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 361 (365)
+-. +-...-...-..++.++.+-|++.-. ..+..-.+...=..|.++|.++.
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 11112222333355666666654432 45555555555566666666554
No 236
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.66 E-value=0.072 Score=49.18 Aligned_cols=124 Identities=14% Similarity=0.085 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHH
Q 017811 172 DMTVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE 250 (365)
Q Consensus 172 ~~~~~e~~~~a~~~k~~G~~~~~~~-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~ 250 (365)
.+++......+..+.+.|..+++++ +|..|+...++|+++++.... .........+++..++..++.+|+..+.++
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~---~~~~~~~~~elr~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK---MDKLSPDGSELRLSILRLLANAYLEWDTYE 101 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh---ccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence 4566677788999999999999999 999999999999999754211 112223345678889999999999998765
Q ss_pred HH---HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811 251 EA---IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298 (365)
Q Consensus 251 ~A---~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P 298 (365)
.. ....+.+-...|+.+-.++-.=.++...++.+++...+.+++.--+
T Consensus 102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 43 3333344455677777776666666668999999999998887544
No 237
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.65 E-value=0.0079 Score=55.01 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=65.5
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~ 308 (365)
-++.|.-..+.|+.++|...+..||.++|.|+.++.++|....+-++.-+|-.+|-+||.++|.|.++.....
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3456666678899999999999999999999999999999999999999999999999999999988776544
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.012 Score=58.51 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=80.5
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
-+...|..+...|+.++|+..|++|+..... ..++..-+++.+|.|++-+.+|++|..++...++..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-------------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSE-------------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhh-------------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 3456888889999999999999999843221 234556689999999999999999999999999966
Q ss_pred CCCHHHHH--HHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 017811 264 ENNVKALF--RRGKARAELGQT-------DAAREDFLKAGKFAP 298 (365)
Q Consensus 264 p~n~ka~~--~~g~a~~~l~~~-------~~A~~~l~~al~l~P 298 (365)
. ..+++| -.|.|+..+++. ++|...|.++-.+-.
T Consensus 336 ~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 336 K-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred c-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 5 445554 578899999999 888888888766543
No 239
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.035 Score=50.77 Aligned_cols=86 Identities=8% Similarity=-0.012 Sum_probs=73.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHH
Q 017811 192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF 271 (365)
Q Consensus 192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~ 271 (365)
+.+..+|..||++..--.+..|.+. ..+.-||.||+...+|..|..+|.+.-.+.|...+-.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r-----------------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR-----------------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 4677888999988887777777542 23788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 017811 272 RRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 272 ~~g~a~~~l~~~~~A~~~l~~al 294 (365)
..++.++.-+.|.+|+.......
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhc
Confidence 99999999999999987766554
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.57 E-value=0.021 Score=53.44 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=86.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC---
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED--- 263 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~--- 263 (365)
..|+.+...+-|++|+..|++|+++...+.+. -+-..++..|+..|-.++++++|+-+..+|+++-
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~-----------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDA-----------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-----------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 37889999999999999999999987653221 1123468888888888888888888888877653
Q ss_pred ---CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHH----HHHHHHHHHHHHHHHHHHHH
Q 017811 264 ---ENNV----KALFRRGKARAELGQTDAAREDFLKAGKFA--PEDKSI----ARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 264 ---p~n~----ka~~~~g~a~~~l~~~~~A~~~l~~al~l~--P~n~~~----~~~l~~l~~~~~~~~~~~k~ 323 (365)
..|. -++|+++.++..+|+.-+|.+..+.+.++. -.|..+ ..-++.+++...+.+...++
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 2333 378888888888888888888888777653 233322 22344555544444444433
No 241
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.54 E-value=0.00088 Score=61.90 Aligned_cols=108 Identities=10% Similarity=-0.033 Sum_probs=77.5
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 017811 243 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK 322 (365)
Q Consensus 243 ~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k 322 (365)
.+..|+++.|+.+|..+++++|.+.-.|-.|+.+++.+++...|+.++..|++++|+...-.......++.++...++.+
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34567799999999999999999999999999999999999999999999999999876655555655555555544333
Q ss_pred HHHhcccCCCCCccccchhHHHHHHHHHHH
Q 017811 323 EIYKGIFGPRPEPKQKKNWLIIFWQLLVSL 352 (365)
Q Consensus 323 ~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~ 352 (365)
. +......+-+ .....|++-+...+.++
T Consensus 204 d-l~~a~kld~d-E~~~a~lKeV~p~a~ki 231 (377)
T KOG1308|consen 204 D-LALACKLDYD-EANSATLKEVFPNAGKI 231 (377)
T ss_pred H-HHHHHhcccc-HHHHHHHHHhccchhhh
Confidence 3 4444332221 12244555444444433
No 242
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.50 E-value=0.011 Score=58.25 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=87.0
Q ss_pred hhhhhhhhhh-hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 185 RKMDGNALFK-EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 185 ~k~~G~~~~~-~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
++..+..|++ +|+..+|+.+|..|+-+.++... ..+++.+|.++.++|.-.+|--.+..|+.-.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k---------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK---------------DIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc---------------cchhhhHHHHHHHcccccchhheeehhccCC
Confidence 4456666665 79999999999999999887422 2358899999999999999988888888887
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~ 302 (365)
|.-..-+|-+|+++.++++|......|..+++.+|....
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 776777999999999999999999999999999997533
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.47 E-value=0.056 Score=44.47 Aligned_cols=106 Identities=20% Similarity=0.147 Sum_probs=70.8
Q ss_pred hHHHHHHHHhcCHHHHHHHHHHHHhCCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811 237 LNMAACLLKLKRYEEAIGQCSLVLGEDEN----------------------NVKALFRRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~----------------------n~ka~~~~g~a~~~l~~~~~A~~~l~~al 294 (365)
...|......++...++..+.+++.+... ...++.+++.++...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34455566677889999999998876421 13477778889999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHHHHHHH------HHHhcccCCCCCccccchhH
Q 017811 295 KFAPEDKSIARELRLLAEHEKAVYKKQK------EIYKGIFGPRPEPKQKKNWL 342 (365)
Q Consensus 295 ~l~P~n~~~~~~l~~l~~~~~~~~~~~k------~~y~kmf~~~~~~~~~~~~~ 342 (365)
.++|-|..+...+-.+....++.....+ ..+..-|+..|.......|.
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~ 143 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYR 143 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH
Confidence 9999999999998888776666544333 33334466666555444444
No 244
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.022 Score=51.48 Aligned_cols=77 Identities=22% Similarity=0.211 Sum_probs=69.5
Q ss_pred HhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 017811 230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE 306 (365)
Q Consensus 230 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~ 306 (365)
++...+..|+=..|+..++|+.|..+..+.|.++|.++-.+--+|.+|.++|.+.-|+.++...++..|+++.+...
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 34456688888999999999999999999999999999999999999999999999999999999999998765433
No 245
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.15 Score=49.54 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 017811 194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR 273 (365)
Q Consensus 194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~ 273 (365)
...+...+...|+.||++.|..... .+++++-.|.-.++..+...|...+-.||...|. .|.+--.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFt-------------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~Y 443 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFT-------------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGY 443 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccch-------------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHH
Confidence 4577888999999999999864221 1344555555555666666666666666666553 2222223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811 274 GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 333 (365)
Q Consensus 274 g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~ 333 (365)
-..-.++++++.....|.+-|+..|.|-.+....+.+...+++.+ ..+..|.-..+++.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd-RaRaifelAi~qp~ 502 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD-RARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH-HHHHHHHHHhcCcc
Confidence 334445566666666666666666666666666666555555543 34455555555544
No 246
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.19 Score=49.14 Aligned_cols=115 Identities=19% Similarity=0.163 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 017811 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR 277 (365)
Q Consensus 198 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~ 277 (365)
-.+-...|+.|+.-.+.|.. ++++......+.+.+.+.-..|.++|...|+|+..|..-|.=.
T Consensus 87 ~~rIv~lyr~at~rf~~D~~-----------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we 149 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVK-----------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE 149 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH
Confidence 34556789999988887633 3666655555666799999999999999999999999999888
Q ss_pred HHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017811 278 AELGQ-TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 329 (365)
Q Consensus 278 ~~l~~-~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf 329 (365)
+..+. .+.|...|.++|+.+|+++.++.+.-++...--....+.+.......
T Consensus 150 fe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~ 202 (568)
T KOG2396|consen 150 FEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDS 202 (568)
T ss_pred HhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88777 89999999999999999999988876665555555555555444443
No 247
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.34 E-value=0.027 Score=58.95 Aligned_cols=115 Identities=8% Similarity=-0.084 Sum_probs=75.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh---ccchhh----------hhhhhHHHHHHHh----hchhhhHHHHHHH
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYM---GDDFMF----------QLFGKYRDMALAV----KNPCHLNMAACLL 244 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~---~~~~~~----------~~~~~~~~~~~~~----~~~~~~nla~~~~ 244 (365)
...+...-+.+.+.|.+++|...|....+.. |+...+ +..++-.+.+..+ ....|..+..++.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 3445556666677777777777777765432 221100 0001111111111 1234677777788
Q ss_pred HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
..|+++.|...++++++++|++...|..++.+|...|++++|...++...+.
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 8889999999999999999988888999999999999999999888877644
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.1 Score=46.94 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=84.3
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHh----CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLG----ED--ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE 306 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~----~~--p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~ 306 (365)
..+...|+.+.++.|+-+.|..+++.+-+ ++ ..+.-++-+.+.+|.-.++|.+|...|.+++..||.|+.+...
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~Nn 291 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNN 291 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhch
Confidence 34577899999999999999999995532 22 3456677788888888999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 307 LRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 307 l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
.+.|..-.++...+.|. ...|....|...-.
T Consensus 292 KALcllYlg~l~DAiK~-~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQ-LEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhccCCccchh
Confidence 88888777777777666 66677777755444
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.32 E-value=0.063 Score=49.22 Aligned_cols=107 Identities=18% Similarity=0.114 Sum_probs=84.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 268 (365)
Q Consensus 189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k 268 (365)
|......+++.++...+... -..+++..+.-..+.+..+.+...+++..++..+...++++.++...+..+.++|-+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~g-~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~ 188 (280)
T COG3629 110 GLKARAGLRFEQAGELLSEG-PVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP 188 (280)
T ss_pred ccchhhhHHHHHHHHHhhcC-CcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH
Confidence 33334444666666666542 22223333333456777888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
+|.++-.+|+..|+...|+..|++.-++
T Consensus 189 ~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 189 AYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 9999999999999999999999887764
No 250
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.29 E-value=0.094 Score=48.47 Aligned_cols=109 Identities=15% Similarity=0.004 Sum_probs=80.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH-hcCHHHHHHHHHHHHhCCCCCH
Q 017811 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSLVLGEDENNV 267 (365)
Q Consensus 189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~aL~~~p~n~ 267 (365)
.+..-+.+..+.|...|.+|++..+-. ..+|...|..-++ .++.+.|...|+.+++..|.+.
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~~-----------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRCT-----------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS------------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCCC-----------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 344445566888999999998443322 2348888888666 5667779999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHH
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIARELRLLAEHE 314 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~---~~~~~l~~l~~~~ 314 (365)
..+.....-+..+++.+.|...|++++..-|... .+....-......
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~ 120 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY 120 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999888765 3444443333333
No 251
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.29 E-value=0.012 Score=53.76 Aligned_cols=84 Identities=21% Similarity=0.137 Sum_probs=70.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
+.+.|......+....+.|+.++|...|..|+.+.|.++. ++..+|...-.-++.-+|-.+|.
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~-----------------~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ-----------------ILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH-----------------HHHHHhHHHHhhhhhHhhhhhhh
Confidence 3455555566677778999999999999999999999755 37788888777788899999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHH
Q 017811 258 LVLGEDENNVKALFRRGKARA 278 (365)
Q Consensus 258 ~aL~~~p~n~ka~~~~g~a~~ 278 (365)
+||.++|.|.+|+.++++..-
T Consensus 175 ~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 175 KALTISPGNSEALVNRARTTP 195 (472)
T ss_pred eeeeeCCCchHHHhhhhccch
Confidence 999999999999999987543
No 252
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.25 E-value=0.093 Score=46.45 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=74.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC-------HHHHHHHHHHHH
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-------YEEAIGQCSLVL 260 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~~~~~aL 260 (365)
.+..+-....+.+|+..|.-||-...-... . ....+.+++.+|.+|-.+++ +..|+..|.+++
T Consensus 83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~-----~-----~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~ 152 (214)
T PF09986_consen 83 KPRDFSGERTLEEAIESYKLALLCAQIKKE-----K-----PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAY 152 (214)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhCC-----C-----HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 344666778899999999999866421100 0 11345679999999999998 455666666666
Q ss_pred hCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 261 GEDE------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 261 ~~~p------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
+... +....+|-+|.....+|++++|..+|.+++..--.
T Consensus 153 ~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 153 ENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 5442 23579999999999999999999999999986433
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.25 E-value=0.062 Score=52.46 Aligned_cols=139 Identities=22% Similarity=0.155 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHhhhhhh------hhhh---hhhHHHHHHHHHHHHHhhccchhhhh----hhhHHHH----HHHhhch
Q 017811 172 DMTVEERIGAADRRKMDGN------ALFK---EEKLEEAMQQYEMAIAYMGDDFMFQL----FGKYRDM----ALAVKNP 234 (365)
Q Consensus 172 ~~~~~e~~~~a~~~k~~G~------~~~~---~~~y~~A~~~y~~al~~~~~~~~~~~----~~~~~~~----~~~~~~~ 234 (365)
+.+.+.+++.|.+-.+.-. .+.. ..-..+|.++|++|++.-........ .+...+. ......-
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y 260 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY 260 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence 4455566666554333221 2222 22356788888888776654322110 0011010 1122234
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKF-APEDKSIARELRLL 310 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l-~P~n~~~~~~l~~l 310 (365)
+...+|+|.-++|+.++|+..++..++..|. +...++++..+++.++.|.++...+.+.-.+ -|+...+...-..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 5678999999999999999999999988775 5679999999999999999999999997654 35555544443333
No 254
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.055 Score=47.81 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=78.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-cCHHHHHHHHHHHHhCCC-----
Q 017811 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLVLGEDE----- 264 (365)
Q Consensus 191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~aL~~~p----- 264 (365)
.+|++.+..+|+.+..+||++..+.-.|.. ...-+..+|..|-.- .++++||.+|+++-+...
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~-----------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTM-----------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHHhhhHHHH-----------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 456777888888999999988876433311 122366777777654 899999999999876432
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811 265 -NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 305 (365)
Q Consensus 265 -~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~ 305 (365)
.--|++...|.--..+++|.+|+..|+++....-+|.-...
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 33578999999999999999999999999988777754443
No 255
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.16 E-value=0.13 Score=44.09 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=80.0
Q ss_pred hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh-CCCCCHHHHHH
Q 017811 194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG-EDENNVKALFR 272 (365)
Q Consensus 194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~-~~p~n~ka~~~ 272 (365)
..=+.+++.+.-.+.+...|... -.+.||.....+|++.+|...|.+++. +-..+...+.-
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTvq------------------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLg 129 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTVQ------------------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLG 129 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhHH------------------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHH
Confidence 33345555555556666655532 278899999999999999999999985 66788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHHH
Q 017811 273 RGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKAVY 318 (365)
Q Consensus 273 ~g~a~~~l~~~~~A~~~l~~al~l~P~n--~~~~~~l~~l~~~~~~~~ 318 (365)
++++.+.++++..|...+++..+-+|.- ++-.-.+.+....+.++.
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 9999999999999999999999998852 333334444444444443
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.16 E-value=0.035 Score=41.95 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHH
Q 017811 252 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKA 316 (365)
Q Consensus 252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n--~~~~~~l~~l~~~~~~ 316 (365)
.+..+.+.+..+|++..+.|.+|.+++..|++++|+..|-.++..+++. ..+++.+-.+-..+..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567888999999999999999999999999999999999999999864 5666666555554444
No 257
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.96 E-value=0.012 Score=51.81 Aligned_cols=62 Identities=23% Similarity=0.227 Sum_probs=57.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 017811 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 302 (365)
Q Consensus 241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~ 302 (365)
....+.++.+.|.+.|.++|++-|.....|||+|......|+++.|...|.+.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567789999999999999999999999999999999999999999999999999998743
No 258
>PLN03077 Protein ECB2; Provisional
Probab=95.92 E-value=0.14 Score=55.06 Aligned_cols=130 Identities=10% Similarity=0.037 Sum_probs=78.6
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHh--hccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAY--MGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
.|......|.+.|+.++|+..|++.++. .|+.. .|..+-.++.+.|.+++|...++...+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~------------------T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV------------------TFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc------------------cHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 3556667778888888888888887653 23322 244555567777788888887777663
Q ss_pred C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 017811 262 E---DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 262 ~---~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
. .| +...|..+..+|...|++++|...+++. .+.|+-......+..| ...+ ..+......+++|+..|++
T Consensus 618 ~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac-~~~~-~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 618 KYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNAC-RIHR-HVELGELAAQHIFELDPNS 690 (857)
T ss_pred HhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHcC-ChHHHHHHHHHHHhhCCCC
Confidence 2 33 5567777788888888888887777764 3556533333333333 2222 2222233455666655543
No 259
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.91 E-value=0.13 Score=55.49 Aligned_cols=65 Identities=15% Similarity=-0.056 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDE--------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 298 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p--------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P 298 (365)
.++.++|.+++..|++++|...+.+++.+-. ...-.+..+|.++...|++++|...+.+++.+..
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 3567889999999999999999999887521 1233456788899999999999999999987643
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.19 Score=46.86 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=75.7
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhh---h-----hhhhH---HHHHHHhh------ch----hhhHHHH
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF---Q-----LFGKY---RDMALAVK------NP----CHLNMAA 241 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~---~-----~~~~~---~~~~~~~~------~~----~~~nla~ 241 (365)
++....+..++.+|++.+|...+.+.|.-.|.+.-. . ..+.. ...+..+. .+ ++--+|.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 566777888999999999999999999998875321 0 00100 00111111 11 2233577
Q ss_pred HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al 294 (365)
|+...|-|++|....+++++++|.+..|..-.+.++...+++.++.+...+--
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 77777888888888888888888888888888888888888888777766543
No 261
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.068 Score=48.90 Aligned_cols=123 Identities=18% Similarity=0.135 Sum_probs=85.3
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHH-------
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC------- 256 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~------- 256 (365)
.+.-.|..|+...+|..|..+|.+.-...|.-..+ .+--|..+++.+.|..|+...
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY-----------------rlY~AQSLY~A~i~ADALrV~~~~~D~~ 108 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY-----------------RLYQAQSLYKACIYADALRVAFLLLDNP 108 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH-----------------HHHHHHHHHHhcccHHHHHHHHHhcCCH
Confidence 45668889999999999999999988887763221 112222333333333333222
Q ss_pred -----------------------HHHHhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 257 -----------------------SLVLGEDE--NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 257 -----------------------~~aL~~~p--~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
+..++.-| +......+.|..+++-|+|++|+.-|+.|++...-++-+...+..++
T Consensus 109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH 188 (459)
T KOG4340|consen 109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH 188 (459)
T ss_pred HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence 22233334 45677888999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHH
Q 017811 312 EHEKAVYKKQKE 323 (365)
Q Consensus 312 ~~~~~~~~~~k~ 323 (365)
-+.+++..+.+-
T Consensus 189 y~~~qyasALk~ 200 (459)
T KOG4340|consen 189 YSSRQYASALKH 200 (459)
T ss_pred HhhhhHHHHHHH
Confidence 777777665544
No 262
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.87 E-value=0.095 Score=54.93 Aligned_cols=146 Identities=12% Similarity=-0.059 Sum_probs=103.1
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHh--hccchhhh----------hhhhHHHHHHHhh--------chhhhHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAY--MGDDFMFQ----------LFGKYRDMALAVK--------NPCHLNMA 240 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~--~~~~~~~~----------~~~~~~~~~~~~~--------~~~~~nla 240 (365)
.+..+......|.+.|++++|+..|++.+.. .|+...+. ..++-...+..+. ...|..+.
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 3457888999999999999999999998763 34322221 1112222222221 12577788
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 017811 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK 320 (365)
Q Consensus 241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~ 320 (365)
.+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...+++.++++|++......|..+....++..+.
T Consensus 470 ~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 8899999999999887764 3444 5667888889999999999999999999999999877777777776666655443
Q ss_pred HHHHHhccc
Q 017811 321 QKEIYKGIF 329 (365)
Q Consensus 321 ~k~~y~kmf 329 (365)
. +++..|-
T Consensus 548 ~-~v~~~m~ 555 (697)
T PLN03081 548 A-KVVETLK 555 (697)
T ss_pred H-HHHHHHH
Confidence 3 3355553
No 263
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.85 E-value=0.21 Score=54.55 Aligned_cols=62 Identities=8% Similarity=-0.046 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGED-ENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~-p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
.|..+-.+|.+.|++++|+..++...+.+ +.+...|..+..+|...|++++|+..|......
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 34555556666666666666666665554 335556666666666666666666666665553
No 264
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.79 E-value=0.18 Score=55.15 Aligned_cols=95 Identities=14% Similarity=-0.015 Sum_probs=66.0
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHH
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP-EDKSIARELRLL 310 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~--~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P-~n~~~~~~l~~l 310 (365)
..|..+..+|.+.|++++|+..+...... .| +...|..+..+|...|++++|...|..+.+... -+......|-..
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45777788888888888888888887764 45 467788888888888888888888888877532 234455555555
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q 017811 311 AEHEKAVYKKQKEIYKGIFG 330 (365)
Q Consensus 311 ~~~~~~~~~~~k~~y~kmf~ 330 (365)
..+.++.+ .....|..|..
T Consensus 694 y~k~G~~e-eA~~lf~eM~~ 712 (1060)
T PLN03218 694 CSNAKNWK-KALELYEDIKS 712 (1060)
T ss_pred HHhCCCHH-HHHHHHHHHHH
Confidence 45555544 34556777743
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.74 E-value=0.14 Score=50.90 Aligned_cols=96 Identities=19% Similarity=0.068 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC----HHHH
Q 017811 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN----VKAL 270 (365)
Q Consensus 195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n----~ka~ 270 (365)
......|...........|+..-+ ++..|..+...|+.++|+..+++++.....- .-++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lf-----------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALF-----------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHH-----------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 345556666777777777765443 7889999999999999999999998544332 3489
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811 271 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 307 (365)
Q Consensus 271 ~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l 307 (365)
|.+|.+++.+.+|++|...+.+..+.+.-.+.....+
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999999999999999999999877666555544
No 266
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=0.43 Score=46.49 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=103.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
.-|.=-..++++..|...|.+||.....+ .++++..|.|-++.+....|...+++|+.+=|.-
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~-----------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRN-----------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhccccc-----------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 34444456788999999999999887554 4569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811 267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 334 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~ 334 (365)
-+.+|..-..-..+|+...|...|.+=+...|+... ....-....+.++. +..+..|.+..=..|+
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa-W~sfI~fElRykei-eraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA-WLSFIKFELRYKEI-ERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHhhHH-HHHHHHHHHHheeccc
Confidence 999999999999999999999999999999998543 33333333344433 4667889988766653
No 267
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.18 Score=45.48 Aligned_cols=69 Identities=25% Similarity=0.199 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCcHH
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF-LKAGKFAPEDKS 302 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l-~~al~l~P~n~~ 302 (365)
.+++..|.|++.+++|++|......+|.-+++++.++-++-.+-..+|.-.++...+ .+....+|+++-
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 357889999999999999999999999999999999999999999999987776655 455556777653
No 268
>PLN03077 Protein ECB2; Provisional
Probab=95.60 E-value=0.16 Score=54.57 Aligned_cols=115 Identities=7% Similarity=-0.137 Sum_probs=91.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH
Q 017811 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA 269 (365)
Q Consensus 190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka 269 (365)
..+.+.|++++|...|....+..+-.+. ...|..+..++.+.|++++|...+++. .+.| ++..
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~---------------~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~ 659 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPN---------------LKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAV 659 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCc---------------hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHH
Confidence 4577889999999999988754332211 224889999999999999999998874 4566 4667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811 270 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 321 (365)
Q Consensus 270 ~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~ 321 (365)
|-.+-.++..-++.+.|....+++++++|++......|..++...++..+..
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 7777778888999999999999999999999999999888877666655433
No 269
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.60 E-value=0.2 Score=54.50 Aligned_cols=122 Identities=18% Similarity=0.201 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811 196 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 275 (365)
Q Consensus 196 ~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~ 275 (365)
|.=+...+.|++|-+++.. ..+|..|.-.|.+-..+++|.+.++.-++--....+.|..+|.
T Consensus 1511 G~eesl~kVFeRAcqycd~------------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDA------------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYAD 1572 (1710)
T ss_pred CcHHHHHHHHHHHHHhcch------------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3334455667777666543 2346667777777777777777777766655566667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 017811 276 ARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 336 (365)
Q Consensus 276 a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~ 336 (365)
.++..++-+.|...+++||+.-|. +.++....+.+.-+..+ .+.-|..|...+...|.-+
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD-aeRGRtlfEgll~ayPKRt 1634 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD-AERGRTLFEGLLSAYPKRT 1634 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC-chhhHHHHHHHHhhCccch
Confidence 777777777777777777777776 44444444444333332 2233455666665555433
No 270
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.57 E-value=0.11 Score=49.29 Aligned_cols=92 Identities=18% Similarity=0.057 Sum_probs=58.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV 267 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ 267 (365)
.+..+...|++++|.+.-..+++..-+.. +..+ .-..+.+++..=+...++.++..|+++
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-------------------L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDPR-------------------LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccChh-------------------HHHH-HhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 45567788999999999999988754321 1111 122345566666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
-.++.+|+.++..+.|.+|...|+.|++..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 66666666666666666666666666666655
No 271
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.50 E-value=0.11 Score=56.06 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=77.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC--
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-- 265 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~-- 265 (365)
.|..++..|++..|...+.+++...+..... ....++.++|.++...|++++|...+.+++.....
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g 525 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYY------------SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD 525 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 4567788999999999999999865542110 11234678999999999999999999999865321
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 266 ----NVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 266 ----n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
-..++..+|.++...|++++|...+.+++.+
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1357788999999999999999999999986
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.47 E-value=0.23 Score=42.61 Aligned_cols=101 Identities=17% Similarity=0.055 Sum_probs=74.0
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
-..+...|+.|.+.|+++.|++.|.++....... .-...+++++-.+.+-.++|..+..+..++-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSP--------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4467788999999999999999999988776442 12345688888888899999999999888754
Q ss_pred CC--CCCH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 262 ED--ENNV--K--ALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 262 ~~--p~n~--k--a~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
+- +.++ + .....|.+++..++|..|...|-.++.-
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 32 2222 2 2334566777888999988888766543
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.22 Score=44.41 Aligned_cols=132 Identities=17% Similarity=0.086 Sum_probs=84.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH----HhCC
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV----LGED 263 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a----L~~~ 263 (365)
++......-+.++|+..|++++.+...+.. ..+...++-..+..+.+++.|.+|-..+.+- +..+
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr-----------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDR-----------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 444555667778888888888887754321 1223445788899999999999998877663 3333
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 017811 264 --ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR 332 (365)
Q Consensus 264 --p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~ 332 (365)
|.--|++.-.-.+|+...+|..|...++.+.++..-+.. ..-+.|...+..+++.....+++|++.+
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s--ed~r~lenLL~ayd~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS--EDSRSLENLLTAYDEGDIEEIKKVLSSP 253 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh--HHHHHHHHHHHHhccCCHHHHHHHHcCh
Confidence 444566666667777778999999999998876432211 1122333445555555555566665443
No 274
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.15 E-value=0.19 Score=45.86 Aligned_cols=73 Identities=16% Similarity=0.015 Sum_probs=62.9
Q ss_pred hhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811 222 GKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 222 ~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al 294 (365)
+..++-+..+..+++.-.|..|...|.+.+|+..|+++++++|-+...+.-+-+.|..+|+--.|.+.|.+.-
T Consensus 268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445666777778888889999999999999999999999999999999999999999999777777776543
No 275
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.14 E-value=0.025 Score=35.34 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
++.|+|.+|..+|+|++|+..+.+++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4778888888888888888888877754
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.08 E-value=0.13 Score=37.41 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=55.6
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+..+.+.|..++.+.+..+|+..++++++..++... +-.++--++.+|...|+|.+++.+...=
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~--------------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED--------------RFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999999999999877422 2234677888999999999999987765
Q ss_pred Hh
Q 017811 260 LG 261 (365)
Q Consensus 260 L~ 261 (365)
++
T Consensus 70 ~~ 71 (80)
T PF10579_consen 70 LE 71 (80)
T ss_pred HH
Confidence 54
No 277
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.05 E-value=0.32 Score=46.40 Aligned_cols=138 Identities=20% Similarity=0.174 Sum_probs=97.4
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+...|..|...|+++.|++.|.++-.+.....- .+..+.|+-.+-+-+++|.....+-.+|...-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh--------------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH--------------VINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH--------------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 3456788899999999999999998777654211 24458888888889999999999988887652
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCcHHHHHHHHHHHHHHH---HHHHHHHHH
Q 017811 264 --------ENNVKALFRRGKARAELGQTDAAREDFLKAGK--------FAPEDKSIARELRLLAEHEK---AVYKKQKEI 324 (365)
Q Consensus 264 --------p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~--------l~P~n~~~~~~l~~l~~~~~---~~~~~~k~~ 324 (365)
.-.++...-.|.+.+.+++|..|...|-.+.. +.|.|..+.-.|-.+..--+ +.+-.....
T Consensus 218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~ 297 (466)
T KOG0686|consen 218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNES 297 (466)
T ss_pred hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchh
Confidence 12456778889999999999999988876643 24556665555544432111 112234556
Q ss_pred HhcccCCCCCc
Q 017811 325 YKGIFGPRPEP 335 (365)
Q Consensus 325 y~kmf~~~~~~ 335 (365)
|+..|+..|+.
T Consensus 298 Fk~flel~Pql 308 (466)
T KOG0686|consen 298 FKLFLELEPQL 308 (466)
T ss_pred hhhHHhcChHH
Confidence 88888888843
No 278
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.02 E-value=0.063 Score=52.19 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=65.8
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHh---------CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLG---------EDE---------NNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~---------~~p---------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
++|+|.++++++.|..++.+|.+||. +.| .....+|+.|..|++.|+.-.|..+|.++....
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999995 122 345689999999999999999999999999999
Q ss_pred CCcHHHHHHHHHH
Q 017811 298 PEDKSIARELRLL 310 (365)
Q Consensus 298 P~n~~~~~~l~~l 310 (365)
-.|+.++-.+..|
T Consensus 366 h~nPrlWLRlAEc 378 (696)
T KOG2471|consen 366 HRNPRLWLRLAEC 378 (696)
T ss_pred hcCcHHHHHHHHH
Confidence 9999988777765
No 279
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.01 E-value=0.22 Score=38.87 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=67.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHH----HHhcCHHHHHHHHHHHHhCC
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL----LKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+..+|.+|++.+|++.-+..+...+.+... -....+...++..+|..- .+.-=.-.+++.+.++..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~-------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS-------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch-------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 5678899999999999999999887764321 011112222222222111 01111446778888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
|..+..+|.+|+=+.....|.++...-+++|.+
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888888888888777777788888777777765
No 280
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.85 E-value=0.7 Score=50.50 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=88.3
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~--n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
.++|...|..+++.++-++|.....+||..-|. ++...-..|+.-++.|+-+.+...|+-.+.-+|.-.+++.-+-..
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 346888888888888888899999999988887 788888889999999999999999999999999888888766554
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccccchhHHHHHHH
Q 017811 311 AEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQL 348 (365)
Q Consensus 311 ~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~ 348 (365)
.. .....+..|.+|++.....-...+.+-+.+.+++|
T Consensus 1644 ei-k~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1644 EI-KHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HH-ccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 22 22334567888888877766655555555555554
No 281
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.75 E-value=0.4 Score=44.28 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=80.4
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE-LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~-l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
|..+.....+.+..+.|...+.+|+...+.+...|...|..-+. .++.+-|...|+.+++..|.+..++...-......
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 55566666777779999999999998777788999999999777 45666699999999999999988877765554555
Q ss_pred HHHHHHHHHHHhcccCCCCCcc-ccchhH
Q 017811 315 KAVYKKQKEIYKGIFGPRPEPK-QKKNWL 342 (365)
Q Consensus 315 ~~~~~~~k~~y~kmf~~~~~~~-~~~~~~ 342 (365)
. ...+.|.+|++.+...+... .+..|.
T Consensus 84 ~-d~~~aR~lfer~i~~l~~~~~~~~iw~ 111 (280)
T PF05843_consen 84 N-DINNARALFERAISSLPKEKQSKKIWK 111 (280)
T ss_dssp T--HHHHHHHHHHHCCTSSCHHHCHHHHH
T ss_pred C-cHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 4 45688999999999977666 344443
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.74 E-value=0.37 Score=45.52 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=75.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHH-hhccchhhh----h------------hhhHHHHHHHhhchhhhHHHHHHHHh--
Q 017811 186 KMDGNALFKEEKLEEAMQQYEMAIA-YMGDDFMFQ----L------------FGKYRDMALAVKNPCHLNMAACLLKL-- 246 (365)
Q Consensus 186 k~~G~~~~~~~~y~~A~~~y~~al~-~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~nla~~~~kl-- 246 (365)
.+.+..++..|+..+|+......+. ......... . ..........+...+++-+|.-...+
T Consensus 188 ~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~ 267 (352)
T PF02259_consen 188 LEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYS 267 (352)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcc
Confidence 3455556666666777777777766 222110000 0 00012223445567788888888777
Q ss_pred ----cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 017811 247 ----KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT-----------------DAAREDFLKAGKFAPE 299 (365)
Q Consensus 247 ----~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~-----------------~~A~~~l~~al~l~P~ 299 (365)
+.+++++..|..++.++|.+.++|+..|..+..+=+. ..|+..|-+++.+.++
T Consensus 268 ~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 268 KLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8899999999999999999999999999877765322 3377777888887776
No 283
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.74 E-value=0.037 Score=53.71 Aligned_cols=95 Identities=9% Similarity=-0.077 Sum_probs=69.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHH-hhccchhhhhhhhH-HHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIA-YMGDDFMFQLFGKY-RDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
+.+.|-.+|..+.|..++.+|.+|++ .... ...+..+.. ......-...+++|.|..|+..|++-.|..++.++...
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q-L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQ-LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHH-HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 45677789999999999999999996 2211 000000000 00011112346899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 017811 263 DENNVKALFRRGKARAEL 280 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l 280 (365)
.-.|+..|.|+|.|.++-
T Consensus 365 fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhcCcHHHHHHHHHHHHH
Confidence 999999999999998764
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.66 E-value=1.1 Score=38.74 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=88.4
Q ss_pred hhhhhhhh---hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHh-----hchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 189 GNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV-----KNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 189 G~~~~~~~---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
|-.|+... ....|...|.+++........ ............. ..-..+.+|..+...+++++|+..++.+|
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44455444 444888999999988743221 1111111111111 11234677888999999999999999999
Q ss_pred hCCC-CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811 261 GEDE-NNVK--ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL-RLLAEHEKAVYKKQKEIYKGIFGPRPE 334 (365)
Q Consensus 261 ~~~p-~n~k--a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l-~~l~~~~~~~~~~~k~~y~kmf~~~~~ 334 (365)
..-. .+.+ +-.|+|.++..++.+|+|+..+..... ++-.....++ +.+...+++. ...+..|.+.+....+
T Consensus 117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k-~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDK-QEARAAYEKALESDAS 191 (207)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCch-HHHHHHHHHHHHccCC
Confidence 6443 3445 557999999999999999998875532 2223333333 4554444444 4556668888777643
No 285
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.64 E-value=0.45 Score=46.07 Aligned_cols=134 Identities=17% Similarity=0.152 Sum_probs=89.8
Q ss_pred HHHHHHHhhhhhhhhhhhhh-HHHHHHHHHHHHHhhccchhhhhh------hhHHHH---------------HHHhh---
Q 017811 178 RIGAADRRKMDGNALFKEEK-LEEAMQQYEMAIAYMGDDFMFQLF------GKYRDM---------------ALAVK--- 232 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~-y~~A~~~y~~al~~~~~~~~~~~~------~~~~~~---------------~~~~~--- 232 (365)
+-+.+..+...+..+++.|. -+.|++..+.++...+.+..-... ..+.+. +.+..
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 34455566667777777777 667888888888777765431110 000000 00000
Q ss_pred -------chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----cH
Q 017811 233 -------NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE----DK 301 (365)
Q Consensus 233 -------~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~----n~ 301 (365)
..-.+.=|..++..|+|.+|..++.=+.+++| ++.+|--+|.|++...+|++|...+... -|+ |.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~ds 530 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDS 530 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHH
Confidence 11122335667789999999999999999999 9999999999999999999999988754 333 34
Q ss_pred HHHHHHHHHHHHHH
Q 017811 302 SIARELRLLAEHEK 315 (365)
Q Consensus 302 ~~~~~l~~l~~~~~ 315 (365)
.+++.+..|.+.+-
T Consensus 531 kvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 531 KVQKALALCQKHLP 544 (549)
T ss_pred HHHHHHHHHHHhhh
Confidence 56666676665443
No 286
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.46 E-value=0.21 Score=40.42 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=37.3
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 275 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~ 275 (365)
..+.+-||..|+++++|+.++.+++..|+.+|+|..|.--.-.
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4468899999999999999999999999999999987654433
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.45 E-value=3 Score=38.42 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=77.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhhc-cchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHHHHHhC----CC-
Q 017811 192 LFKEEKLEEAMQQYEMAIAYMG-DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGE----DE- 264 (365)
Q Consensus 192 ~~~~~~y~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~aL~~----~p- 264 (365)
..++|+++.|..+|.++-...+ .++.. ......+++|.|...++.+ +++.|+...++++++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~----------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM----------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHH----------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 4678999999999999977662 22111 1224557999999999999 999999999998876 22
Q ss_pred --C-------CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCCcHHHH-HHHHHH
Q 017811 265 --N-------NVKALFRRGKARAELGQTDA---AREDFLKAGKFAPEDKSIA-RELRLL 310 (365)
Q Consensus 265 --~-------n~ka~~~~g~a~~~l~~~~~---A~~~l~~al~l~P~n~~~~-~~l~~l 310 (365)
. ..+.+.-++.+|+..+.++. |...++.+-.-.|+.+.+. -.+..+
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il 131 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEIL 131 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 1 13577889999999888654 5555555555567666655 334444
No 288
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=0.93 Score=40.57 Aligned_cols=126 Identities=11% Similarity=-0.014 Sum_probs=80.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC---
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED--- 263 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~--- 263 (365)
.-++.+-..++|++|..+..+|++....+...- . ..+.|-..|+..-.+..|.++..++++|..+.
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------h--AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------H--AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------H--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334444456889999998888887765543210 0 13457778888888999999999999998764
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH---HH---HHHHHHHHHHHHHHHHH
Q 017811 264 --ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA---RE---LRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 264 --p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~---~~---l~~l~~~~~~~~~~~k~ 323 (365)
|+-.-.-.-+|-=.....+.++|+..|++++.+-..+...+ .. ..++..+.+...+....
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 33333333333334566778999999999998765443322 22 33334455555554443
No 289
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.36 E-value=0.45 Score=49.55 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=79.0
Q ss_pred HhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 245 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI 324 (365)
Q Consensus 245 kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~ 324 (365)
..++|.+|+..|.++++..|+..-|.--.|..+..+|++++|...++..-.+-++|......+..|.+.+++..+.. ..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~-~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV-HL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH-HH
Confidence 45679999999999999999999999999999999999999998888888888888999999999999888877554 55
Q ss_pred HhcccCCCCC
Q 017811 325 YKGIFGPRPE 334 (365)
Q Consensus 325 y~kmf~~~~~ 334 (365)
|.+..+..|.
T Consensus 100 Ye~~~~~~P~ 109 (932)
T KOG2053|consen 100 YERANQKYPS 109 (932)
T ss_pred HHHHHhhCCc
Confidence 9999888885
No 290
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.33 E-value=0.067 Score=47.14 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=53.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV 267 (365)
Q Consensus 190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ 267 (365)
..+++.+++..|.+.|.+|+.+.|.... -++.+|....+.|+++.|...|.++|++||.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~-----------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAA-----------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhh-----------------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3457789999999999999999998533 389999999999999999999999999999753
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.31 E-value=0.51 Score=46.31 Aligned_cols=116 Identities=18% Similarity=0.094 Sum_probs=73.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHH-----HHHHhcCHHHHHHHHHHHHhCC--
Q 017811 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA-----CLLKLKRYEEAIGQCSLVLGED-- 263 (365)
Q Consensus 191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-----~~~kl~~~~~A~~~~~~aL~~~-- 263 (365)
...+..+...-++.-++||++.|++.+. |.-||. ..-...-|.+|++..+.++..+
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdA-----------------YILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~ 239 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADA-----------------YILLAEEEASTIVEAEELLRQAVKAGEASLGKSQF 239 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHH-----------------HhhcccccccCHHHHHHHHHHHHHHHHHhhchhhh
Confidence 4567788899999999999999986442 111111 0000011222222222222211
Q ss_pred --------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Q 017811 264 --------------ENN--VKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 264 --------------p~n--~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~--n~~~~~~l~~l~~~~~~~~~~~k~ 323 (365)
..+ +-+.+|+|.|...+|+.++|++.++..++..|. +-.++..|-.+...++.+.+.++-
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 112 346678999999999999999999999998886 466788887777766666655543
No 292
>PRK10941 hypothetical protein; Provisional
Probab=94.26 E-value=0.35 Score=44.32 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=65.6
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
-+.+.=..+.+.++|..|+++.+..+.+.|+++.- +--+|.+|.+++.+..|+.+++.-++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e-----------------~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYE-----------------IRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34455667889999999999999999999997542 5679999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 017811 264 ENNVKALFRRGKAR 277 (365)
Q Consensus 264 p~n~ka~~~~g~a~ 277 (365)
|+.+.+-.-+.++.
T Consensus 246 P~dp~a~~ik~ql~ 259 (269)
T PRK10941 246 PEDPISEMIRAQIH 259 (269)
T ss_pred CCchhHHHHHHHHH
Confidence 99988776665543
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.87 E-value=0.15 Score=31.67 Aligned_cols=30 Identities=23% Similarity=0.120 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 267 VKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
..++.++|.+|..+|+|++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
No 294
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.72 E-value=0.11 Score=32.39 Aligned_cols=29 Identities=24% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
.+|.++|.+-+..++|++|+.+|++||++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788888889999999999999988876
No 295
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.69 E-value=0.8 Score=34.50 Aligned_cols=65 Identities=28% Similarity=0.244 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHH
Q 017811 201 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN--VKALFRRGKARA 278 (365)
Q Consensus 201 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n--~ka~~~~g~a~~ 278 (365)
.+...++++..+|++.. +.+.+|.+++..|++++|+..+-.++..++++ -.+.-.+-.++.
T Consensus 7 ~~~al~~~~a~~P~D~~-----------------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~ 69 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD-----------------ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE 69 (90)
T ss_dssp HHHHHHHHHHHSTT-HH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH
Confidence 35667888888888754 38999999999999999999999999999876 333333333343
Q ss_pred HcCC
Q 017811 279 ELGQ 282 (365)
Q Consensus 279 ~l~~ 282 (365)
.+|.
T Consensus 70 ~lg~ 73 (90)
T PF14561_consen 70 LLGP 73 (90)
T ss_dssp HH-T
T ss_pred HcCC
Confidence 3333
No 296
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=1.4 Score=43.12 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=74.2
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
+.-+.-.|-....-+.|+.|...|..|.+.... .++..-+..|+|..|++.++-+. ++.-.=.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--------------~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~ 429 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--------------IDLQAFCNLNLAISYLRIGDAED---LYKALDL 429 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--------------HHHHHHHHHhHHHHHHHhccHHH---HHHHHHh
Confidence 334445777777888889999999999887654 34567788999999999776433 2322223
Q ss_pred CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 262 EDENN----------VKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 262 ~~p~n----------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
+.|.| ..++|-.|.-.+..+++.||...+.+.|+..
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 45543 3488889999999999999999999999986
No 297
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=1.1 Score=45.21 Aligned_cols=80 Identities=19% Similarity=0.070 Sum_probs=67.6
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 307 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l 307 (365)
.++-|-|.-++++.+|..++..|...|..-|.+ .|..-.++.||+.+.+.|.|.+.++.|-+.+|.+.-.+..+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 467788999999999999999999999776643 57788899999999999999999999999999987766665
Q ss_pred HHHHHH
Q 017811 308 RLLAEH 313 (365)
Q Consensus 308 ~~l~~~ 313 (365)
-.....
T Consensus 435 ~~~~~~ 440 (872)
T KOG4814|consen 435 LQSFLA 440 (872)
T ss_pred HHHHHH
Confidence 544333
No 298
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.03 E-value=0.81 Score=49.08 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=78.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-------CHHHHHHHHHHH
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-------RYEEAIGQCSLV 259 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-------~~~~A~~~~~~a 259 (365)
...+.+...+.|++|+..|++.-..+|....- ..+.+.+|...+..- .+.+|+.-+++.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEG--------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc--------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 45567889999999999999999999874321 123556666655432 466666666543
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
---|.-+--|.-.|.+|..+|+|++-++.|..|++..|+++.+-..-..+
T Consensus 546 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 546 -HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred -cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 33456677788888889999999999999999999988887665544433
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.98 E-value=0.37 Score=36.56 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=45.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
...+.++|..|++.+.+.+........... ......+.+|+|.++...|++++|+..++.++.+-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~--------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS--------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356789999999999999887654321100 01122347788888888888888888888887653
No 300
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.54 Score=43.91 Aligned_cols=91 Identities=13% Similarity=-0.012 Sum_probs=61.5
Q ss_pred hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC-C---HHH
Q 017811 194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-N---VKA 269 (365)
Q Consensus 194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~-n---~ka 269 (365)
..|-|.+|.+.-.+|+++++.+... ...+|.++.-.+++.++.++..+--..-.. . ..-
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa-----------------~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHN 249 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWA-----------------SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHN 249 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHH-----------------HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhh
Confidence 4566667777777777777665332 556777777789999999887664432211 1 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCcH
Q 017811 270 LFRRGKARAELGQTDAAREDFLKAG--KFAPEDK 301 (365)
Q Consensus 270 ~~~~g~a~~~l~~~~~A~~~l~~al--~l~P~n~ 301 (365)
|..-|.+|..-++|+.|+..|.+-+ ++..+|.
T Consensus 250 yWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 250 YWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 5667889999999999999997644 3444444
No 301
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.89 E-value=1.2 Score=40.62 Aligned_cols=62 Identities=13% Similarity=-0.056 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811 252 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 313 (365)
Q Consensus 252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~ 313 (365)
|..+|.+|+.+.|.+-..|+.+|..+...++.-.|+-+|-+++-..--.+.+...|..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997655557788777776554
No 302
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.05 E-value=3.1 Score=39.90 Aligned_cols=106 Identities=17% Similarity=0.061 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh---------C---
Q 017811 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG---------E--- 262 (365)
Q Consensus 195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~---------~--- 262 (365)
...|.++...|..++.....+.-.... ......+..++.++.++...|++..|-+.+++||- .
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll-----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~ 81 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLL-----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF 81 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHH-----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456777888887777655221111000 00112345689999999999999999999998861 1
Q ss_pred --CC------------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHH
Q 017811 263 --DE------------NN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIAR 305 (365)
Q Consensus 263 --~p------------~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~-n~~~~~ 305 (365)
++ .| ..|+||..+.+...|-+.-|++..+-.+.+||. |+-...
T Consensus 82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~l 142 (360)
T PF04910_consen 82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVL 142 (360)
T ss_pred hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhH
Confidence 22 22 349999999999999999999999999999999 654333
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.96 E-value=1.6 Score=36.51 Aligned_cols=78 Identities=14% Similarity=-0.033 Sum_probs=49.0
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 313 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~ 313 (365)
+..+..+-++.++.+.+...+...--+.|.++..-.--|..++..|+|.+|+..|+.+..-.|..+.+...+..|...
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 445555555566666666666655566666666666666666666666666666666666666666666666666543
No 304
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.91 E-value=0.58 Score=28.65 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCc
Q 017811 268 KALFRRGKARAELGQTDAARED--FLKAGKFAPED 300 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~--l~~al~l~P~n 300 (365)
+.++-+|-.+...|+|++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566777777788888888887 44777777654
No 305
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.88 E-value=1.3 Score=33.55 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=46.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhCC----CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 242 CLLKLKRYEEAIGQCSLVLGED----ENN-----VKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 242 ~~~kl~~~~~A~~~~~~aL~~~----p~n-----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
-..+.++|..|++.+.+.+... ... .-++..+|.++...|++++|+..++.|+.+...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3458899999988777766432 222 468899999999999999999999999998653
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.77 E-value=3.4 Score=38.92 Aligned_cols=122 Identities=18% Similarity=0.088 Sum_probs=89.0
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
..+..+...+..+-+.|++..|.....++....+..... ...+.+-.|..+-..|+..+|+......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-------------~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-------------LPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-------------CcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667788888999999999999999988876332110 1223556677777788888888877766
Q ss_pred HhC--C--------------------------------CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCC
Q 017811 260 LGE--D--------------------------------ENNVKALFRRGKARAEL------GQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 260 L~~--~--------------------------------p~n~ka~~~~g~a~~~l------~~~~~A~~~l~~al~l~P~ 299 (365)
+.. . ....++++.+|.-...+ +.++++...|+.++.++|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 651 0 01246888888888888 8899999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 017811 300 DKSIARELRLLAEHE 314 (365)
Q Consensus 300 n~~~~~~l~~l~~~~ 314 (365)
...+...++......
T Consensus 291 ~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 291 WEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877777666554433
No 307
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.32 E-value=0.42 Score=44.09 Aligned_cols=75 Identities=21% Similarity=0.148 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFR-RGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 309 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~-~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~ 309 (365)
++...+..-.+.+.|.+.-..|.++|+..|.|+..|.. -+.-+...++++.+...|.++|+++|.++.++.+.-+
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 45666666677889999999999999999999998776 5566778899999999999999999999888776443
No 308
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.22 E-value=3.5 Score=39.55 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=54.6
Q ss_pred hhhHHHHHHHH---hcCHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 017811 235 CHLNMAACLLK---LKRYEEAIGQCSL-VLGEDENNVKALFRRGKARAEL---------GQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 235 ~~~nla~~~~k---l~~~~~A~~~~~~-aL~~~p~n~ka~~~~g~a~~~l---------~~~~~A~~~l~~al~l~P~ 299 (365)
+....|.++.+ .|+.++|+..+.. +....+.++..+.-.|.+|..+ ...++|+.+|.++.+++|+
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 45677888888 9999999999999 4566678899999999988764 2368999999999999976
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.04 E-value=8.4 Score=32.29 Aligned_cols=112 Identities=9% Similarity=-0.107 Sum_probs=81.0
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
+..+.+....-...++..++...+...--+-|..... -.--|..++..|+|.+|+..++.+.+
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~-----------------~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL-----------------DLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH-----------------HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4456666677777778888888886666666665432 55678899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 262 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 262 ~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
-.|..+-+---++.|+..+++.+= ..+-..+++..+ |+.+...++.+..
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 999888777778889999998631 112233454443 6777766666644
No 310
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.97 E-value=2.4 Score=37.53 Aligned_cols=88 Identities=17% Similarity=0.082 Sum_probs=61.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
-+..|--++..|+......-+..|+..|.+|+........ +. . ...+.+-+|..+.++|++++|+.++.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~---~-------~~~l~YLigeL~rrlg~~~eA~~~fs 189 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GM---D-------EATLLYLIGELNRRLGNYDEAKRWFS 189 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-Cc---h-------HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3556666777777777777788888888888876643111 00 0 12367889999999999999999999
Q ss_pred HHHhCCCCCH-HHHHHHHHH
Q 017811 258 LVLGEDENNV-KALFRRGKA 276 (365)
Q Consensus 258 ~aL~~~p~n~-ka~~~~g~a 276 (365)
+++.....+. ..+..+|+-
T Consensus 190 ~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 190 RVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred HHHcCCCCCCcHHHHHHHHH
Confidence 9998654433 355555553
No 311
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.95 E-value=0.66 Score=36.71 Aligned_cols=74 Identities=19% Similarity=0.087 Sum_probs=55.7
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
|-.+-.....+...|+|++++..-.+||.++...-.. .+..-.+.+.+-+++|.++..+|+.++|+..++++-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL------~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL------HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T------TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc------ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4556677788889999999999999999988653221 1112345577789999999999999999999998764
No 312
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.87 E-value=1.3 Score=32.10 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.5
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
+.|..+-.++..+=+.|+|.+|+.+|++||+.+-.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999999999988743
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.67 E-value=3.7 Score=41.89 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=71.1
Q ss_pred hhhhhhhhh----h-hHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc---CHHHHHHHHHH
Q 017811 187 MDGNALFKE----E-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQCSL 258 (365)
Q Consensus 187 ~~G~~~~~~----~-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~ 258 (365)
..|..|++. . ++..|+..|.+|...-..+ +.+++|.||..-. ++..|..+|..
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-------------------a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-------------------AQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-------------------HHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 466677663 2 7888999999998875443 4778899988765 57889999988
Q ss_pred HHhCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 017811 259 VLGEDENNVKALFRRGKARAEL----GQTDAAREDFLKAGKFA 297 (365)
Q Consensus 259 aL~~~p~n~ka~~~~g~a~~~l----~~~~~A~~~l~~al~l~ 297 (365)
|... .++.|+|++|.||..- -+...|..+++++.+..
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8765 4899999999998864 56789999999999887
No 314
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.46 E-value=1 Score=28.92 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 271 FRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 271 ~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677888888888888888888774
No 315
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.35 E-value=1.6 Score=30.91 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
++.|..+...|..+=+.|+|.+|+.+|.+|+..+-.
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 356777888889999999999999999999998754
No 316
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=1.6 Score=40.06 Aligned_cols=55 Identities=18% Similarity=0.145 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811 238 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 292 (365)
Q Consensus 238 nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~ 292 (365)
.-+.-.+..+++.+|...+..++..+|+|..+..-++.||...|+++.|...|..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 4455667889999999999999999999999999999999999999887766553
No 317
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.28 E-value=0.44 Score=29.62 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
+|..||.+-+..++|.+|+.+|.++|++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999764
No 318
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.06 E-value=1.2 Score=32.33 Aligned_cols=35 Identities=17% Similarity=-0.034 Sum_probs=30.3
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
..|..+-..|..+=+.|+|.+|+.+|..||+.+-.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999998743
No 319
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.94 E-value=1.5 Score=34.85 Aligned_cols=118 Identities=19% Similarity=0.106 Sum_probs=75.9
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH----H
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL----V 259 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----a 259 (365)
++-..|+..++.+++-.|+-+|++|+.+...-.. ..+..-+....+.+....|||..+-.+|+.+-.+.|..- +
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~--~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDE--SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4567889999999999999999999988654311 112223334455566688999999999999999998764 5
Q ss_pred HhCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 260 LGEDENNVKALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a-~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
+.+-|.-+..- ..+ .-.+|--..|+-+| ++..|+ +.+.+.+..+
T Consensus 81 ltLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~vq~i 125 (140)
T PF10952_consen 81 LTLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN-PEIARLVQHI 125 (140)
T ss_pred HHhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHHHhc
Confidence 66666533210 111 12234444455444 345665 6666665543
No 320
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=3.1 Score=40.86 Aligned_cols=102 Identities=18% Similarity=0.054 Sum_probs=81.5
Q ss_pred HHHHHhhhhhhhhhh-hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-CHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFK-EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCS 257 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~-~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~ 257 (365)
-.|..+...|..++. ..+++.|..+.++|..+...-+.| .+++-.++.-||.||.... .+..|....+
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f----------ydvKf~a~SlLa~lh~~~~~s~~~~KalLr 113 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF----------YDVKFQAASLLAHLHHQLAQSFPPAKALLR 113 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH----------HhhhhHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 346777788887776 689999999999999887654333 1334445788999999998 8999999999
Q ss_pred HHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 017811 258 LVLGEDENN----VKALFRRGKARAELGQTDAAREDFL 291 (365)
Q Consensus 258 ~aL~~~p~n----~ka~~~~g~a~~~l~~~~~A~~~l~ 291 (365)
+++++-.++ .|.+|.+++.+.-..+|..|++.+.
T Consensus 114 kaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 114 KAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 999987665 4788999999999999999988754
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.33 E-value=9.1 Score=32.70 Aligned_cols=74 Identities=15% Similarity=0.049 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHH
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAP--EDKSIAREL 307 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P--~n~~~~~~l 307 (365)
.++..+|.-|.+.|+++.|+..|.++....... ...+++.-.+.+..++|..+...+.++-.+-. .+.+.+..|
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 468999999999999999999999988765432 45788899999999999999999999887643 344444433
No 322
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.93 E-value=1.4 Score=39.96 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=46.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
..|..++..|+|++|+..|+.+......... ..+...++..+..|+.++|+.+..+..|-+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-----------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGW-----------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5788888888888888888888666544322 23345567888888888888888888776655
No 323
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=88.88 E-value=1.8 Score=42.18 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc--C-----HH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--R-----YE 250 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~-----~~ 250 (365)
.+.........|-.++..|+|.+|+..|+.+|...|-.... ..++.+++.++...|.-.+-.+.+.+. . .+
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~--~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~ 277 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVE--SREEEDEAKELIEICREYILGLSIELERRELPKDPVE 277 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 34445556678999999999999999999999887643211 122333444444444333322333322 1 22
Q ss_pred HHHHHHHHH-----HhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 017811 251 EAIGQCSLV-----LGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 305 (365)
Q Consensus 251 ~A~~~~~~a-----L~~~p~n~k-a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~ 305 (365)
.....++.+ ..+.|.+.- ++..--...++.++|.-|...-++.|++.|....+.+
T Consensus 278 ~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 278 DQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 222222222 345565544 3333344667789999999999999999998754443
No 324
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.79 E-value=8 Score=37.16 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=87.3
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCcHHHH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGE----DENNVKALFRRGKARAE---LGQTDAAREDFLKAG-KFAPEDKSIA 304 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~----~p~n~ka~~~~g~a~~~---l~~~~~A~~~l~~al-~l~P~n~~~~ 304 (365)
..+..|+=.+|-..++|+.-+...+..-.+ -++.....+.+|.|+.. .|+.++|+..+..++ ...+.++++.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 345778889999999999999988877666 45567778888889988 999999999999954 4555678888
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHhcccCCCCCccccchhHHHHHHHHHHHHH
Q 017811 305 RELRLLAEHEK--------AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVL 354 (365)
Q Consensus 305 ~~l~~l~~~~~--------~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
-.++.+++.+- +...+.-..|++-|...+ ..|.|+=+..|+.+-.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-----~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-----DYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-----cccchHHHHHHHHHcC
Confidence 88888876432 245566788999998886 3455555555544433
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.55 E-value=4.6 Score=35.66 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=62.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
.-+++.+...+|+.....-++.+|.+.-....+=+.|.-.|+|++|+..++-+-.++|++....+..+.+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 356788899999999999999999999988888899999999999999999999999998665555554433
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.07 E-value=25 Score=36.35 Aligned_cols=110 Identities=10% Similarity=-0.042 Sum_probs=81.6
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccch-------hhhh--hhhHHHHHHHhhchhhhHHHHHHHHhcCHHHH
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF-------MFQL--FGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A 252 (365)
+-.+.-.|-.....+..++|.+++.+|++...... ..+. ..........+...+++.++.|.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 44555567777777777789999999988775432 0111 11223344566677888999999999999999
Q ss_pred HHHHHHHHhCC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017811 253 IGQCSLVLGED---E------NNVKALFRRGKARAELGQTDAAREDFL 291 (365)
Q Consensus 253 ~~~~~~aL~~~---p------~n~ka~~~~g~a~~~l~~~~~A~~~l~ 291 (365)
......+.... | -.+..+|-.|..+...|+.+.|...|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99888776542 2 247789999999999999999999998
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.04 E-value=0.71 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 017811 269 ALFRRGKARAELGQTDAAREDF 290 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l 290 (365)
+++.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555444
No 328
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=12 Score=33.98 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=76.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-cCHHHHHHHHHHHHhCCCCCHHHH
Q 017811 192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLVLGEDENNVKAL 270 (365)
Q Consensus 192 ~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~aL~~~p~n~ka~ 270 (365)
+++..+-.+|+++-..+|.++|.++.. +.-+=.|.-.+ .+..+-+.+.+.+++-+|.|-..+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTV-----------------W~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW 115 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTV-----------------WQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW 115 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchH-----------------HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence 345556678999999999999987653 44444444444 356777788888888888888888
Q ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 271 FRRGKARAELGQTD-AAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 271 ~~~g~a~~~l~~~~-~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
..|-.+...+|+.. .-+...+.++..+.+|=.+.+...-+-+.-
T Consensus 116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F 160 (318)
T KOG0530|consen 116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFF 160 (318)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence 88888888888777 677778888888877766665555444333
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.86 E-value=12 Score=39.29 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHH----------HhCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLV----------LGEDENN----------VKALFRRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~a----------L~~~p~n----------~ka~~~~g~a~~~l~~~~~A~~~l~~al 294 (365)
.|+|.|.-+-..++...|+++|+++ |..+|.. .+.|-+-|+-+...|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4889998888889999999999874 4445543 3455667888888999999999988775
Q ss_pred hh---------------------CCCcHHHHHHHHHHHHHHHHHHH
Q 017811 295 KF---------------------APEDKSIARELRLLAEHEKAVYK 319 (365)
Q Consensus 295 ~l---------------------~P~n~~~~~~l~~l~~~~~~~~~ 319 (365)
.. ...|..+-..|++-++...+..+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHH
Confidence 42 23456666666666655555443
No 330
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.66 E-value=2.8 Score=30.51 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
..|..+..+|..+=+.|+|.+|+.+|.+||..+-.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34667778889999999999999999999988754
No 331
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.59 E-value=25 Score=33.07 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
.+.-+..+++||+.+|++.+-+..+-.+...+.+-++....+++++..+|++..+....-..
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999998887665433
No 332
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.55 E-value=6.5 Score=39.54 Aligned_cols=99 Identities=17% Similarity=0.073 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH-HHHHHHHhCCCCCHHHHHHH
Q 017811 195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI-GQCSLVLGEDENNVKALFRR 273 (365)
Q Consensus 195 ~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~-~~~~~aL~~~p~n~ka~~~~ 273 (365)
.+....|+-....++..+|.+ ..++.|||.+....|..-.++ ..+..++...|.|...+.-+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 80 LADSTLAFLAKRIPLSVNPEN-----------------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred cccchhHHHHHhhhHhcCccc-----------------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 344445555555555555543 346888888888777655554 45555899999998877666
Q ss_pred ------HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 274 ------GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 274 ------g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
++.+..+++-.++...+.++..+.|.++.+...+...
T Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 143 IRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8888889999999999999999999997776666544
No 333
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.88 E-value=6.2 Score=39.69 Aligned_cols=95 Identities=17% Similarity=0.066 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 017811 201 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL 280 (365)
Q Consensus 201 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l 280 (365)
|+..|...+.+.+.+..+ .. .++ ++..+..++....+......++..+|++..++..+|.++...
T Consensus 50 ~~~a~~~~~~~~~~~~~l-------------ll-a~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~ 114 (620)
T COG3914 50 AIYALLLGIAINDVNPEL-------------LL-AAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELD 114 (620)
T ss_pred HHHHHHccCccCCCCHHH-------------HH-HHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHh
Confidence 566666666665554332 11 123 788888899998999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHhhCCCcHHHHHHHHHH
Q 017811 281 GQTDAAREDFLK-AGKFAPEDKSIARELRLL 310 (365)
Q Consensus 281 ~~~~~A~~~l~~-al~l~P~n~~~~~~l~~l 310 (365)
|..-.+...+.. +....|+|..+...+-.+
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (620)
T COG3914 115 GLQFLALADISEIAEWLSPDNAEFLGHLIRF 145 (620)
T ss_pred hhHHHHHHHHHHHHHhcCcchHHHHhhHHHH
Confidence 888887777766 999999999888777333
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.28 E-value=1 Score=25.09 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
+++++|..+..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 47899999999999999998775
No 335
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.21 E-value=3.6 Score=37.39 Aligned_cols=62 Identities=15% Similarity=-0.120 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 017811 201 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 279 (365)
Q Consensus 201 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~ 279 (365)
|..+|.+|+.+.|... ..|+.||..+...++.-.|+-+|-++|-..-..+.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G-----------------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG-----------------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS-----------------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC-----------------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7899999999999863 3499999999999999999999999998776678888888888887
No 336
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.20 E-value=9.8 Score=36.58 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=85.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH---HHhCCCC
Q 017811 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL---VLGEDEN 265 (365)
Q Consensus 189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~---aL~~~p~ 265 (365)
+..+|+.|+..++-...+.+-+..| |-.++..|....--+.++.-.++ .-.+.|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~eP----------------------HP~ia~lY~~ar~gdta~dRlkRa~~L~slk~n 327 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEP----------------------HPDIALLYVRARSGDTALDRLKRAKKLESLKPN 327 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCC----------------------ChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCcc
Confidence 4455566666666655555555554 34566666666555566665554 4468899
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 017811 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 334 (365)
Q Consensus 266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~ 334 (365)
|....+-++.+-+.-|+|..|...-+.+..+.|.. .+.-.|..+.........+.+....+.+..+.+
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999974 444566666665534445666666666666554
No 337
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=86.12 E-value=2.7 Score=30.45 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=31.0
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
++.|..+..+|...-..|+|++|+.+|..||+.+-.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999999998754
No 338
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.90 E-value=1.3 Score=42.94 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVL--------GEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL--------~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
..-|..+|.-+|+|..|+...+.+= ..-+-++..+|..|-||+++++|.+|+..|..+|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999988765421 12244677999999999999999999999887763
No 339
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.65 E-value=8 Score=37.45 Aligned_cols=78 Identities=8% Similarity=0.091 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCCCCCcccc-chhHHHHHHH
Q 017811 272 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY--KGIFGPRPEPKQK-KNWLIIFWQL 348 (365)
Q Consensus 272 ~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y--~kmf~~~~~~~~~-~~~~~~~~~~ 348 (365)
.+..||+.+++-+-|+...-+.+.++|.+..-+-.-+.|.+++..+.++.|... --||-......|. +.+.++-|+.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqa 312 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQA 312 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHH
Confidence 577899999999999999999999999865544445667778888887776533 2344444445555 3444444444
Q ss_pred H
Q 017811 349 L 349 (365)
Q Consensus 349 ~ 349 (365)
.
T Consensus 313 m 313 (569)
T PF15015_consen 313 M 313 (569)
T ss_pred H
Confidence 3
No 340
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=85.43 E-value=3.7 Score=30.06 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=45.6
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh----hhhhHHHHHHHhhchhhhHHHHHHHHh
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ----LFGKYRDMALAVKNPCHLNMAACLLKL 246 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~nla~~~~kl 246 (365)
.+.|....+.|-.+=..|+.++|+.+|++++..+......+ -.+...+....+..+.-.|++.+-.++
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888888888999999999999999885432221 133445555555555555655554443
No 341
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.01 E-value=15 Score=37.52 Aligned_cols=153 Identities=8% Similarity=0.013 Sum_probs=100.8
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchh--hhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--FQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
+.+..+-+-|..-++..+++.|+++.++|... |.... +-...+..+....-..+++.-.+-..-.+|-++.....|+
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44566677777778889999999988888754 43311 1011111122111123446666666677788888888888
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811 258 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP--EDKSIAREL--RLLAEHEKAVYKKQKEIYKGIFGPRP 333 (365)
Q Consensus 258 ~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P--~n~~~~~~l--~~l~~~~~~~~~~~k~~y~kmf~~~~ 333 (365)
++|.+.=-.+....+.|.-+..-..|++|.+.|++.+.|.| +--+++... +.+.+-.+...+..|.+|...++.=|
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 88888888888888888888888888888888888888764 334444332 23333344556778888888887544
No 342
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.01 E-value=3.9 Score=37.24 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=60.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV 267 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ 267 (365)
.=+.+...+++..|...-.+.+.++|.++.- .--+|.+|.++|.+.-|+.++..-++..|+.+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e-----------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYE-----------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhh-----------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 3346778899999999999999999987532 56889999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 017811 268 KALFRRGKA 276 (365)
Q Consensus 268 ka~~~~g~a 276 (365)
.+-.-+++.
T Consensus 250 ~a~~ir~~l 258 (269)
T COG2912 250 IAEMIRAQL 258 (269)
T ss_pred HHHHHHHHH
Confidence 877665554
No 343
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.80 E-value=14 Score=37.78 Aligned_cols=103 Identities=19% Similarity=0.110 Sum_probs=75.0
Q ss_pred hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc-----CHHHHHHHHHHHHhCCCCCHH
Q 017811 194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-----RYEEAIGQCSLVLGEDENNVK 268 (365)
Q Consensus 194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----~~~~A~~~~~~aL~~~p~n~k 268 (365)
..++.+.|+..|..|..-... ........+.+.+|.||++-. ++..|+..+.++-.+. ++.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~------------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~ 326 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKK------------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPD 326 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHH------------HHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--Cch
Confidence 346888899998888773100 000112335889999999843 6788999999988775 788
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 269 ALFRRGKARAELG---QTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 269 a~~~~g~a~~~l~---~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
+.|++|.++..-. ++..|..+|..|... .+..+...+..|..
T Consensus 327 a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 327 AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 9999999999877 678999999998864 44566666666644
No 344
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.71 E-value=23 Score=32.48 Aligned_cols=104 Identities=14% Similarity=-0.001 Sum_probs=74.3
Q ss_pred hhhhhhhhhh----hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHh-----c--CHHHHH
Q 017811 185 RKMDGNALFK----EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-----K--RYEEAI 253 (365)
Q Consensus 185 ~k~~G~~~~~----~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-----~--~~~~A~ 253 (365)
....|..++. ..++.+|...|.+|...-.... ..+.++++.+|..- - +...|+
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----------------ALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH----------------HHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 3445555554 4589999999999988743321 11256777777653 1 233788
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811 254 GQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELR 308 (365)
Q Consensus 254 ~~~~~aL~~~p~n~ka~~~~g~a~~~----l~~~~~A~~~l~~al~l~P~n~~~~~~l~ 308 (365)
..+.++-... +..+.+++|.+|.. -.++.+|..+|.++.+... ......+.
T Consensus 176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 8888887766 89999999988866 3478999999999999876 55555555
No 345
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=36 Score=34.41 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh--ccch--hhhh-hhhHHHHHHHhhchhhhHHHHHHHHhcCH
Q 017811 175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDF--MFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRY 249 (365)
Q Consensus 175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~--~~~~--~~~~-~~~~~~~~~~~~~~~~~nla~~~~kl~~~ 249 (365)
++-.+..|...+..|..-+..+-..+|+-.+.+|+.-. |... ..+. -.+.+.. -.+++.--....+.|.|
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~F-----yL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQF-----YLALFRYMQSLAQRGCW 358 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHH-----HHHHHHHHHHHHhcCCh
Confidence 34566777777777777777777777777777776432 1100 0000 0111111 11233334455678999
Q ss_pred HHHHHHHHHHHhCCCC-CH
Q 017811 250 EEAIGQCSLVLGEDEN-NV 267 (365)
Q Consensus 250 ~~A~~~~~~aL~~~p~-n~ 267 (365)
.-|.++|+..|.++|. ++
T Consensus 359 rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred HHHHHHHHHHhhcCCcCCc
Confidence 9999999999999997 44
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.25 E-value=8 Score=36.44 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 017811 254 GQCSLVLGEDENNVKALFRRGKARAELGQ------------TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 321 (365)
Q Consensus 254 ~~~~~aL~~~p~n~ka~~~~g~a~~~l~~------------~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~ 321 (365)
.-+++.+..+|.++.+|..+....-.+-. .+.-+..|++||+.+|++..+...+-.+....- ..++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence 34778899999999999999876666543 467788999999999999888777666655444 33445
Q ss_pred HHHHhcccCCCCC
Q 017811 322 KEIYKGIFGPRPE 334 (365)
Q Consensus 322 k~~y~kmf~~~~~ 334 (365)
.+.+++++...+.
T Consensus 85 ~~~we~~l~~~~~ 97 (321)
T PF08424_consen 85 AKKWEELLFKNPG 97 (321)
T ss_pred HHHHHHHHHHCCC
Confidence 6668888877664
No 347
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.97 E-value=17 Score=34.95 Aligned_cols=71 Identities=18% Similarity=-0.026 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 307 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l 307 (365)
++.-.|...+ --+...|..+...++++.|+-+-+-.--+.+|+..|+..++-..++.+-+.+|. +++....
T Consensus 232 LLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY 302 (531)
T COG3898 232 LLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLY 302 (531)
T ss_pred HHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence 3444444443 236889999999999999999999999999999999999999999999999986 4444443
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.63 E-value=28 Score=35.95 Aligned_cols=117 Identities=20% Similarity=0.157 Sum_probs=85.2
Q ss_pred HHHHHhhhhhhhhhh-hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFK-EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~-~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 258 (365)
..|......|..++. -.++++|..+..+++.+...+ .+ .+++-.+.+-++.++.+.+... |...+++
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~----------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~ 124 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RL----------TDLKFRCQFLLARIYFKTNPKA-ALKNLDK 124 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-ch----------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence 457778888998884 688999999999999988652 21 3344555667789998888777 9999999
Q ss_pred HHhCCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhC--CCcHHHHHHHH
Q 017811 259 VLGEDEN----NVKALFRRGKARAE--LGQTDAAREDFLKAGKFA--PEDKSIARELR 308 (365)
Q Consensus 259 aL~~~p~----n~ka~~~~g~a~~~--l~~~~~A~~~l~~al~l~--P~n~~~~~~l~ 308 (365)
.++.-.. .+.-.||+-++... .+++..|+..++....+. +.++.+.-.+.
T Consensus 125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 9876544 45555565544332 369999999999998876 46665554433
No 349
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.46 E-value=11 Score=40.59 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=78.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
....|+.+|..+.|+.|.-+|...-. +..||..+..+|+|+.|.+..++|-....
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vSN-------------------------~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSN-------------------------FAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhhh-------------------------HHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 44578889999999988888865322 67889999999999999999888754331
Q ss_pred C-------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 265 N-------------------------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 265 ~-------------------------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
. ++.-+-.+-.-|...|-|++-+..++.+|.++--+-.+..+|+.++.+-
T Consensus 1252 WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 1 1112233445577789999999999999999887777788888887654
No 350
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.31 E-value=7.4 Score=31.94 Aligned_cols=49 Identities=22% Similarity=0.140 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 283 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~ 283 (365)
..+.+|...+..|+|.-|+..++.++..+|+|..|..-++.+|.+++.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666666666666666666665543
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.22 E-value=1.9 Score=27.68 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=24.7
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
.++||.+|+.+|+++.|....+.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 478999999999999999999999953
No 352
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=83.19 E-value=20 Score=28.04 Aligned_cols=85 Identities=15% Similarity=0.030 Sum_probs=60.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCcHHHH
Q 017811 239 MAACLLKLKRYEEAIGQCSLVLGEDENNV---KALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDKSIA 304 (365)
Q Consensus 239 la~~~~kl~~~~~A~~~~~~aL~~~p~n~---ka~~~~g~a~~~l~~-----------~~~A~~~l~~al~l~P~n~~~~ 304 (365)
+|.-++..|++-+|+...+..+...+++. -.+...|.++..+.. .-.|+..|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56788899999999999999998877766 455567777776644 3568899999999999876555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017811 305 RELRLLAEHEKAVYKKQKE 323 (365)
Q Consensus 305 ~~l~~l~~~~~~~~~~~k~ 323 (365)
.+++.-.....-|++..++
T Consensus 82 ~~la~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKK 100 (111)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5555432334444444443
No 353
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=83.04 E-value=6.6 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=30.2
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
+..|..+..+|...-..|+|.+|+.+|..+|+.+-.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345667777888888999999999999999998754
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.93 E-value=2.4 Score=25.92 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=24.7
Q ss_pred hhHHHHHHHHhcCHHHHHHH--HHHHHhCCCCC
Q 017811 236 HLNMAACLLKLKRYEEAIGQ--CSLVLGEDENN 266 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~--~~~aL~~~p~n 266 (365)
+..+|.++...|++++|+.. +.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 56789999999999999999 55888887765
No 355
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.92 E-value=2.3 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=29.9
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
+.|..+..+|...=..|+|++|+.+|..||+++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 45677778888888999999999999999998744
No 356
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.65 E-value=11 Score=31.31 Aligned_cols=65 Identities=14% Similarity=-0.146 Sum_probs=30.0
Q ss_pred hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 246 l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
..+++.+.......=-+.|+++..-..-|..++..|+|.+|+..|+...+-.+..+-....+..|
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 44444444444433344454444444445555555555555555544444444434444444444
No 357
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.71 E-value=2.9 Score=34.32 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 017811 265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY 318 (365)
Q Consensus 265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~ 318 (365)
........+++..+..|+|.-|...+..++..+|+|..++.....+...+....
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 466788889999999999999999999999999999999999988877776653
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.39 E-value=38 Score=31.16 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=24.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhccc
Q 017811 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDD 215 (365)
Q Consensus 186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~ 215 (365)
-+.+..++-..+|..|+..++++++.+..+
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~ 68 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASD 68 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344566777899999999999999998543
No 359
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.34 E-value=2.7 Score=30.31 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhc
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 213 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~ 213 (365)
++.|..+..+|...-..|+|.+|+.+|..|++.+-
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999998874
No 360
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=81.16 E-value=13 Score=39.21 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=51.5
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHH---------------------hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVL---------------------GEDENNVKALFRRGKARAELGQTDAAREDFLK 292 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL---------------------~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~ 292 (365)
++|..-|...-..|+.+.|+.+|..|- .....+-.|-|.+|+.|...|++.+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 467777888888999999999888653 22456777999999999999999999998887
Q ss_pred HHhh
Q 017811 293 AGKF 296 (365)
Q Consensus 293 al~l 296 (365)
|..+
T Consensus 993 Aqaf 996 (1416)
T KOG3617|consen 993 AQAF 996 (1416)
T ss_pred HHHH
Confidence 7554
No 361
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=80.55 E-value=22 Score=39.18 Aligned_cols=110 Identities=12% Similarity=-0.057 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 258 (365)
...+..++..+..+.+.+++++|+..-.+|.-+.......+... ....|.|++...+..++...|+..+..
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~---------t~~~y~nlal~~f~~~~~~~al~~~~r 1040 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN---------TKLAYGNLALYEFAVKNLSGALKSLNR 1040 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH---------HHHHhhHHHHHHHhccCccchhhhHHH
Confidence 34456677788888999999999999888876654422211111 133488999999999998899988888
Q ss_pred HHhC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 259 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 259 aL~~--------~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
++.+ .|.-.-..-+++..+..+++++.|+..++.|+.+.
T Consensus 1041 a~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1041 ALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7754 35555566788888999999999999999999864
No 362
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=80.48 E-value=75 Score=32.81 Aligned_cols=131 Identities=13% Similarity=0.055 Sum_probs=96.3
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
+..-|..|-..|+.+.|...|++|+...=... +-...++++-|..-++..+++.|+.....|+..-.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v-------------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTV-------------EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccch-------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 44566677778888888888888876532211 11245689999999999999999999998875432
Q ss_pred C------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017811 265 N------------------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK 326 (365)
Q Consensus 265 ~------------------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~ 326 (365)
. +.+.|-..+.....+|=++.....|.+.+.|.=-.+.+....+.+.+.-+-..+..+. |.
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~-YE 535 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA-YE 535 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH-HH
Confidence 2 2345556677777788888889999999999888888888888887766666666665 66
Q ss_pred ccc
Q 017811 327 GIF 329 (365)
Q Consensus 327 kmf 329 (365)
+=.
T Consensus 536 rgI 538 (835)
T KOG2047|consen 536 RGI 538 (835)
T ss_pred cCC
Confidence 543
No 363
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.44 E-value=16 Score=39.63 Aligned_cols=73 Identities=25% Similarity=0.191 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK-------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 308 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k-------a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~ 308 (365)
|+.-|.+|.++++|++-+.++..|++..|.++. ..||+-.++.... ..|+...--++.+-|.......+-.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISSREEEK 632 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccchHHHH
Confidence 888999999999999999999999999998875 4556555555433 4577778888999998665554433
Q ss_pred HH
Q 017811 309 LL 310 (365)
Q Consensus 309 ~l 310 (365)
.+
T Consensus 633 ~~ 634 (932)
T PRK13184 633 FL 634 (932)
T ss_pred HH
Confidence 33
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.39 E-value=11 Score=27.51 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=43.9
Q ss_pred hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVK---ALFRRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k---a~~~~g~a~~~l~~~~~A~~~l~~al 294 (365)
...|.=++..++..+|+..++++|+..++... ++=.+.+||...|+|.+++.+--.=+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888999999999999998877665 44456788999999999887654433
No 365
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.34 E-value=21 Score=34.56 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=63.9
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH--hcCHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--LKRYEEAIGQCSL 258 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--l~~~~~A~~~~~~ 258 (365)
.+.....++..+|+.++|..|...+...+...|.... ...+.+++.+|.. .-+|.+|...++.
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~---------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE---------------YQRYKDLCEGYDAWDRFDHKEALEYLEK 194 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh---------------HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4556677888999999999999999999886554321 1235555555544 3356666666654
Q ss_pred HHhCC------------------------------CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 259 VLGED------------------------------EN--------NVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 259 aL~~~------------------------------p~--------n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
.+..+ .. -..-++.-|.=....|+|+.|..-+-+++++
T Consensus 195 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 195 LLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44321 00 0112333333444578899999999999876
No 366
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.93 E-value=37 Score=31.84 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=67.7
Q ss_pred HhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC------CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Q 017811 230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN------NVK--ALFRRGKARAELGQTDAAREDFLKAGK--FAPE 299 (365)
Q Consensus 230 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~------n~k--a~~~~g~a~~~l~~~~~A~~~l~~al~--l~P~ 299 (365)
+....+.+.||..|-+.++|..|..... ++.++.. +.| .+.|+|++|+..++-.+|.....++-- .+..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 3345788999999999999999866543 3333331 222 567899999999999999998887643 3457
Q ss_pred cHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 017811 300 DKSIARELRLLAEHEKAV----YKKQKEIY 325 (365)
Q Consensus 300 n~~~~~~l~~l~~~~~~~----~~~~k~~y 325 (365)
|....-+++.|+.+.-++ -++.++.|
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887765443 34444433
No 367
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.24 E-value=67 Score=31.51 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=67.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHH---HH--
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE---EA-- 252 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~---~A-- 252 (365)
.+--+.-+++.|..+++...|.+|+-+.-.|=+.+..+-.- .-+. -+-..-+-+-+-.||+.+++.. .|
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k-----lLe~-VDNyallnLDIVWCYfrLknitcL~DAe~ 232 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK-----LLEL-VDNYALLNLDIVWCYFRLKNITCLPDAEV 232 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH-----HHHh-hcchhhhhcchhheehhhcccccCChHHH
Confidence 44556678899999999999999999888876665432110 0000 0111223445577898887532 11
Q ss_pred -HHHHHHHHh------------C--CCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 253 -IGQCSLVLG------------E--DENNVKALF-----RRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 253 -~~~~~~aL~------------~--~p~n~ka~~-----~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
+..|++.+. + ...-.+|+| --|...++.|+-++|...|+.+-.
T Consensus 233 RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 233 RLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 222332221 1 112234544 358899999999999999987764
No 368
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=78.54 E-value=17 Score=26.22 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 017811 280 LGQTDAAREDFLKAGKF------APEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 330 (365)
Q Consensus 280 l~~~~~A~~~l~~al~l------~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~ 330 (365)
.|+|++|...|..++.. ...|+..+. .++.+..++....-.++..-+.
T Consensus 19 ~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~---~ir~K~~eYl~RAE~i~~~~l~ 72 (75)
T cd02677 19 EGDYEAAFEFYRAGVDLLLKGVQGDSSPERRE---AVKRKIAEYLKRAEEILRLHLS 72 (75)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 36666666666666553 123344333 3335566666655555554443
No 369
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.57 E-value=19 Score=32.54 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCC------CHHHHHH
Q 017811 199 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN------NVKALFR 272 (365)
Q Consensus 199 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~------n~ka~~~ 272 (365)
...|.++.+|+..+..... .-+...+...+|.-|+++|+|++|+..++.++..... ....+..
T Consensus 155 ~~iI~lL~~A~~~f~~~~~-----------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~ 223 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ-----------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWR 223 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc-----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3456666666665543211 1223446789999999999999999999999754321 2457788
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 017811 273 RGKARAELGQTDAAREDFLKA 293 (365)
Q Consensus 273 ~g~a~~~l~~~~~A~~~l~~a 293 (365)
+..|+..+|+.+..+...-+.
T Consensus 224 l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 224 LLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 889999999998877654433
No 370
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.49 E-value=49 Score=32.05 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=68.9
Q ss_pred HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH---H
Q 017811 244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV---Y 318 (365)
Q Consensus 244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~--~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~---~ 318 (365)
.+..-+++-+.+...+|..+|+.-.+|+.|..++...+. +..=+....++|+.||.|-.+....+.+....+.. .
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence 344467788888899999999999999999999997765 67788889999999999987777777666655555 5
Q ss_pred HHHHHHHhcccCCC
Q 017811 319 KKQKEIYKGIFGPR 332 (365)
Q Consensus 319 ~~~k~~y~kmf~~~ 332 (365)
..+-..-.+|....
T Consensus 166 ~~El~ftt~~I~~n 179 (421)
T KOG0529|consen 166 KEELEFTTKLINDN 179 (421)
T ss_pred hhHHHHHHHHHhcc
Confidence 55555555666553
No 371
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=77.42 E-value=4.3 Score=29.27 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
+..|..+...|..+=..|+|.+|+.+|..|++.+-.
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456677778888888899999999999999988743
No 372
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.35 E-value=10 Score=36.86 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=65.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHH
Q 017811 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA 269 (365)
Q Consensus 190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka 269 (365)
..+.-.|+|..|++.... |++.... . -..+..-.+++++.+|.||+-+++|..|+..+..+|-.=......
T Consensus 130 Rvh~LLGDY~~Alk~l~~-idl~~~~-l-------~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~ 200 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLEN-IDLNKKG-L-------YTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQ 200 (404)
T ss_pred HHHHhccCHHHHHHHhhc-cCcccch-h-------hccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445567788877766532 2221111 0 001122246779999999999999999999999988533211112
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC--cHHHHHHHH
Q 017811 270 LFRRGKARAE-LGQTDAAREDFLKAGKFAPE--DKSIARELR 308 (365)
Q Consensus 270 ~~~~g~a~~~-l~~~~~A~~~l~~al~l~P~--n~~~~~~l~ 308 (365)
+..+..-+-. .+..+.....+--|+.+.|. +..+...++
T Consensus 201 ~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lk 242 (404)
T PF10255_consen 201 YHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLK 242 (404)
T ss_pred hccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 2333323333 34467777778888888886 555555554
No 373
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=77.19 E-value=4.4 Score=29.11 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
++.|..+...|...=..|+|.+|+.+|..|++.+-.
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345667777888888899999999999999988743
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.78 E-value=33 Score=34.04 Aligned_cols=98 Identities=17% Similarity=0.001 Sum_probs=64.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 268 (365)
Q Consensus 189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k 268 (365)
-...+..|+...|.+....+++-.|.++.. -.-++.++..+|.|+.|..+..-+-.+-....+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~-----------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~ 358 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVL-----------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS 358 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchh-----------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch
Confidence 344566778888888888888887776542 344566777777777777766665555555556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI 303 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~ 303 (365)
+.-.+-+.+..++++++|...-.-.|.-+-+++++
T Consensus 359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 359 TLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEV 393 (831)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHhccccCChhh
Confidence 66666667777777777776666665544444443
No 375
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.73 E-value=23 Score=34.04 Aligned_cols=101 Identities=17% Similarity=0.023 Sum_probs=79.2
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc-chhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD-DFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
..+..-...+.++|.|..|++..+-.+.++|. |+. .+++-+=..-++.++|+--+..++....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~----------------g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL----------------GVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----------------hhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34555666778899999999999999999998 432 2356666677788899888888887666
Q ss_pred CCCC-----CHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 017811 262 EDEN-----NVKALFRRGKARAELGQT---------------DAAREDFLKAGKFAPE 299 (365)
Q Consensus 262 ~~p~-----n~ka~~~~g~a~~~l~~~---------------~~A~~~l~~al~l~P~ 299 (365)
.... -+..-|..+.|+..+++- +.|...+++|+...|.
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 3222 235778899999999998 8999999999999884
No 376
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=75.44 E-value=16 Score=33.74 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=67.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHHHHHHHHH-------
Q 017811 256 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-------KSIARELRLLAEHEKAVYKKQ------- 321 (365)
Q Consensus 256 ~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n-------~~~~~~l~~l~~~~~~~~~~~------- 321 (365)
+-+.|.-+.++-.+|...|.++..+++....+.+.-+---|+|=. +++...+.++.-+.-.++-+.
T Consensus 95 ~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~ 174 (366)
T KOG1118|consen 95 HGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIK 174 (366)
T ss_pred HHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCC
Confidence 445788888889999999999999999888888777776676621 233333333332222222111
Q ss_pred ---------------HHHHhcccCCCCCcccc-----------chhHHHHHHHHHHHHHHHHhhhcc
Q 017811 322 ---------------KEIYKGIFGPRPEPKQK-----------KNWLIIFWQLLVSLVLGLFKRKRV 362 (365)
Q Consensus 322 ---------------k~~y~kmf~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 362 (365)
...-..||+........ ..|...+.+-|-++..++|.|+|.
T Consensus 175 dEelrqA~eKfEESkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~ 241 (366)
T KOG1118|consen 175 DEELRQALEKFEESKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRD 241 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 11122555554433222 456777888889999999998875
No 377
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.06 E-value=34 Score=36.41 Aligned_cols=127 Identities=15% Similarity=0.069 Sum_probs=78.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHH-------HHhcCHH
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL-------LKLKRYE 250 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-------~kl~~~~ 250 (365)
++.......+.|-.+...|+|.+|+++|+.+|-..|--... ..++.++..++...+.-.+.-.. ++.....
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd--~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~ 1064 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVD--SKEEEAEADELIKICREYIVGLSVELERRKLKKPNLE 1064 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEec--chhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHH
Confidence 36667778889999999999999999999998777642111 01112222222222211111111 1122344
Q ss_pred HH--HHHHHHHHhCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 017811 251 EA--IGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE 306 (365)
Q Consensus 251 ~A--~~~~~~aL~~~p~n~-ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~ 306 (365)
.+ +..|=.-..+.|-+. -|+...-.+++++++|..|...-.+.+++.|..+.+.+.
T Consensus 1065 ~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1065 QQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 44 233333456666554 455556678999999999999999999999986655443
No 378
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=74.99 E-value=44 Score=34.74 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811 263 DENNVKALFRRGKARAELGQTDAAREDFLK 292 (365)
Q Consensus 263 ~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~ 292 (365)
-|++.+.+=.+|.++...|.-++|...|-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 467777777788888888888888777654
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.30 E-value=46 Score=30.38 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH----hcCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017811 199 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRG 274 (365)
Q Consensus 199 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~aL~~~p~n~ka~~~~g 274 (365)
..|+..|.+|..... ..+.+++|.||.. ..++.+|+.+|.++-+... ..+.|+++
T Consensus 172 ~~A~~~~~~aa~~~~-------------------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 172 KKALYLYRKAAELGN-------------------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HhHHHHHHHHHHhcC-------------------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 367777777665542 3357899988866 3489999999999999886 99999999
Q ss_pred HHHHHcC---------------CHHHHHHHHHHHHhhCCC
Q 017811 275 KARAELG---------------QTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 275 ~a~~~l~---------------~~~~A~~~l~~al~l~P~ 299 (365)
++...| +...|..++.++....+.
T Consensus 231 -~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 231 -LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred -HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 666555 778888888888877654
No 380
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.00 E-value=12 Score=36.00 Aligned_cols=67 Identities=25% Similarity=0.199 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHH--hCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVL--GEDENNV--KALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 301 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL--~~~p~n~--ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~ 301 (365)
+.+-|-.+|+..+.|+.|-....++. +.+.+|. ..+|..|++..-..+|..|..+|-.|+...|++.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34445678888899999988777765 2333444 4667899999999999999999999999999843
No 381
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.80 E-value=23 Score=25.65 Aligned_cols=22 Identities=23% Similarity=-0.049 Sum_probs=10.5
Q ss_pred hhHHHHHHHHhcCHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~ 257 (365)
+..+|.-+-+.|++.+|+.+|+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~ 30 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYK 30 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 4444444445555555444443
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.39 E-value=19 Score=30.97 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
....+....+.+...| ++..+.+++.++..+|+.++|...+.++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455666777888888 89999999999999999999999999999999943
No 383
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=72.99 E-value=11 Score=33.57 Aligned_cols=117 Identities=15% Similarity=0.023 Sum_probs=63.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhccchh-hhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH-HHH-HHHHHHHHh-CC-CCCH
Q 017811 193 FKEEKLEEAMQQYEMAIAYMGDDFM-FQLFGKYRDMALAVKNPCHLNMAACLLKLKRY-EEA-IGQCSLVLG-ED-ENNV 267 (365)
Q Consensus 193 ~~~~~y~~A~~~y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~-~~A-~~~~~~aL~-~~-p~n~ 267 (365)
|.-|+|+.|+....-||+..-..++ |.. ..-.+...-.++-|....+.|.. +-. ...+..+.. .+ |+-+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R------~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~v 167 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRR------TLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEV 167 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccC------CchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHH
Confidence 3458889999999999987632211 100 00111111233444455555541 111 111222211 11 4444
Q ss_pred HHHH--HHHHHHH---------HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811 268 KALF--RRGKARA---------ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA 316 (365)
Q Consensus 268 ka~~--~~g~a~~---------~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~ 316 (365)
.|-+ ..|.+++ ..++...|+..|++|+.++|+ ..+...+..|.++++.
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhh
Confidence 4444 4455552 345778999999999999986 5677777777666653
No 384
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.44 E-value=32 Score=31.44 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017811 248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK 326 (365)
Q Consensus 248 ~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~-~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~ 326 (365)
.-..|+.....+|.++|.|-..+..|-.++.+++ +..+-+.++...++-+|+|=.+....+.+-+..+...-.+-..-+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 3456788888999999999888877777777764 567788899999999999999999988888887765546777788
Q ss_pred cccCCCCCccccchhHHHHHHHHHHHHH
Q 017811 327 GIFGPRPEPKQKKNWLIIFWQLLVSLVL 354 (365)
Q Consensus 327 kmf~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
+||..+. ..-++|-... |++..|+
T Consensus 138 ~~l~~Da--KNYHaWshRq--W~~r~F~ 161 (318)
T KOG0530|consen 138 LMLDDDA--KNYHAWSHRQ--WVLRFFK 161 (318)
T ss_pred HHHhccc--cchhhhHHHH--HHHHHHh
Confidence 8887333 3335554433 4444443
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.40 E-value=16 Score=33.76 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 017811 267 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA 316 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~ 316 (365)
.+.+...+..|...|.+.+|+...++++.++|=+......|..+...+++
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 45777789999999999999999999999999988888888777666665
No 386
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.30 E-value=51 Score=31.18 Aligned_cols=76 Identities=20% Similarity=0.121 Sum_probs=57.8
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~--~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
+-+|+|.+..+.--...++...+-.+.. =..+.-.+--+|..+..+|+.++|...|.+++.+.++..+.......+
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4689999988877777777766655543 124556677799999999999999999999999998866655444433
No 387
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.03 E-value=14 Score=34.09 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 017811 265 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 319 (365)
Q Consensus 265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~ 319 (365)
...+++..++.++...++++.+...+++.+.++|-+..++..+.........+..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ 205 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSA 205 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchH
Confidence 3678999999999999999999999999999999999888888777665444433
No 388
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.68 E-value=13 Score=34.05 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=43.3
Q ss_pred HhcCHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 245 KLKRYEEAIGQCSLVLGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 245 kl~~~~~A~~~~~~aL~~~p~n----~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
+..++++|+..|.++|++.+.- .||+-.+-++++.+++|++-...|++.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4568999999999999999863 68999999999999999888887776664
No 389
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.33 E-value=64 Score=31.31 Aligned_cols=105 Identities=18% Similarity=0.070 Sum_probs=77.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhc--CHHHHHHHHHHHHhCCCCCHH
Q 017811 191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RYEEAIGQCSLVLGEDENNVK 268 (365)
Q Consensus 191 ~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~aL~~~p~n~k 268 (365)
...+..-++.-+..-..|+..+|+.+.+ ++-+..++.+.. +|..-+..|.++|+.||.|..
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~a-----------------W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh 146 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGA-----------------WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH 146 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHH-----------------HHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc
Confidence 4444556777788888999999987664 888888888766 589999999999999999988
Q ss_pred HHHHHHH-HHHHcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 269 ALFRRGK-ARAELGQ---TDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 269 a~~~~g~-a~~~l~~---~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
+|..|=. +-..... ..+=+....+++.-++.|=.+......+..
T Consensus 147 ~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 147 AWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred chHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 7754433 3333333 556667778888888888777766555543
No 390
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=69.18 E-value=22 Score=35.59 Aligned_cols=77 Identities=16% Similarity=0.030 Sum_probs=63.4
Q ss_pred hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 017811 246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL---GQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK 322 (365)
Q Consensus 246 l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l---~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k 322 (365)
...+..|+.+|.+++..-|...-.|.+++.+++.. |+.-.|+.+--.|++++|..-.++..|..+...+....++..
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34577899999999999999999999999999885 566778888999999999887777777777777766665443
No 391
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=68.73 E-value=25 Score=38.85 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=80.1
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.+....+.|......+.+.+|.+ -.+++.+..+-.. ....-...+|..+|..+.+++++++|+..+.++.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~---------~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ 1000 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMG---------VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKAC 1000 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhh---------hcchhHHHHHHHHHHHHhhhcchHHHHHhcccce
Confidence 45666778888888888888888 6667666643211 1112235679999999999999999999998876
Q ss_pred hC-------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 261 GE-------D-ENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 261 ~~-------~-p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
-+ + |+...+|-.++......++...|+..+.+++.+
T Consensus 1001 ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1001 IISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 43 3 445678889998888888988999999888876
No 392
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=68.22 E-value=45 Score=27.24 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=28.3
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
.+.-...++..++.+|.||..+|+..+|-..+++|.+.
T Consensus 112 l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 112 LKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp H-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33345568999999999999999999999999999864
No 393
>PF15469 Sec5: Exocyst complex component Sec5
Probab=67.50 E-value=38 Score=28.84 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 190 NALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 190 ~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
..+.+.|+|+.|+..|.+|-.+...
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~ 118 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEK 118 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 3566899999999999999888754
No 394
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.96 E-value=18 Score=20.29 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 017811 281 GQTDAAREDFLKAGKFAPEDKSIARELR 308 (365)
Q Consensus 281 ~~~~~A~~~l~~al~l~P~n~~~~~~l~ 308 (365)
|+++.|...|++++...|.+..+.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456666677777777666666655444
No 395
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.74 E-value=21 Score=33.26 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
-++.|-.+...+...-+.++|.+|+.+|+.|++++-.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 4566667777788888889999999999999987643
No 396
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.60 E-value=84 Score=27.01 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=61.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH-hCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL-GED 263 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL-~~~ 263 (365)
....|..+..+|+-..|+..|..+-.-.+-... .+..+.+.-|..++-.|.|+....-.+..- .-+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-------------~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-------------GRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-------------hhHHHHHHHHHHHhccccHHHHHHHhhhccCCCC
Confidence 345666777778888888888776655443211 112235566667777777877655444321 233
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
|--.-|.--+|.+-.+-|+|..|.++|.....
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44445566677788888888888888887765
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.50 E-value=15 Score=36.22 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 238 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 238 nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
-+-..+.++++|++|.......|.-.=..+..+--.|..-.+++-+++|...+++.+.++|.
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 34456778999999999999998777677777777777888899999999999999999885
No 398
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.90 E-value=22 Score=31.04 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHHHHH
Q 017811 266 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE----DKSIARELRLLAEHEKAV 317 (365)
Q Consensus 266 n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~----n~~~~~~l~~l~~~~~~~ 317 (365)
.+...+.+|.-|. ..+-++|+..|.++|++.+. |+++...|..+...++.+
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3444444444333 44555555555555555433 355555555554444443
No 399
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.69 E-value=74 Score=33.95 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=73.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC---
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED--- 263 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~--- 263 (365)
-.|......++++.|++..+.++...|.+..+ ....++.++|.+++-.|++.+|..+...+.++.
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~------------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYR------------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccch------------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 35667778899999999999999999986543 246679999999999999999999999888763
Q ss_pred -C--CCHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 017811 264 -E--NNVKALFRRGKARAELGQ--TDAAREDFLKA 293 (365)
Q Consensus 264 -p--~n~ka~~~~g~a~~~l~~--~~~A~~~l~~a 293 (365)
. -...+.+..+.++.+.|+ +.+....|...
T Consensus 531 ~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLI 565 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 234677788899999993 44444444433
No 400
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=65.60 E-value=98 Score=30.95 Aligned_cols=89 Identities=6% Similarity=-0.071 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017811 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 328 (365)
Q Consensus 249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~km 328 (365)
...-...|+.|+..-+.+++.|.+...-..+.+.+.+-...|.+++..+|+|++++-.-+.-.-.....-+..|.+|-+-
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34556678888888888999999988877778889999999999999999999988665544444444466788889888
Q ss_pred cCCCCCccc
Q 017811 329 FGPRPEPKQ 337 (365)
Q Consensus 329 f~~~~~~~~ 337 (365)
+...|++..
T Consensus 167 LR~npdsp~ 175 (568)
T KOG2396|consen 167 LRFNPDSPK 175 (568)
T ss_pred hhcCCCChH
Confidence 877776553
No 401
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.54 E-value=11 Score=32.74 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=42.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 254 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~ 254 (365)
....|. ++-+.+-.+|+..|.++|++.+.+..+ ...++..||..|+++++++.|--
T Consensus 144 q~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~-------------n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 144 QYALAT-YYTKRDPEKTIQLLLRALELSNPDDNF-------------NPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCC-------------CHHHHHHHHHHHHHhcchhhhhh
Confidence 334444 445788999999999999998775222 34468999999999999998853
No 402
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=63.61 E-value=5.3 Score=37.68 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=41.5
Q ss_pred chhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 017811 233 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 283 (365)
Q Consensus 233 ~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~ 283 (365)
.++|+.++..++.+.++++|+.+...+....|++..-.-.+..+-....++
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 567999999999999999999999999999998876555555555444444
No 403
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.51 E-value=69 Score=29.74 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC------------------
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR------------------ 248 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~------------------ 248 (365)
+.+|...+.+++.+|+..|.+.+..--.. .+..........++++..|...|+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~---------dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f 78 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSK---------DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF 78 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCCh---------hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh
Q ss_pred ----------------------HHHHHHHHHHHHhCCCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHh
Q 017811 249 ----------------------YEEAIGQCSLVLGEDENNVKALFR------RGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 249 ----------------------~~~A~~~~~~aL~~~p~n~ka~~~------~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
++..+..|+..++-.-..-+.+.| +..+++..|.|.+|+..+.-.+.
T Consensus 79 tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 79 TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 404
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=63.40 E-value=24 Score=32.13 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=62.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC---CC
Q 017811 190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE---NN 266 (365)
Q Consensus 190 ~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p---~n 266 (365)
..++..++.-.|+..|...+.--|.+...-... ... ...+|+-...|+. --...-|...++.||-... +.
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~---a~~---lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~ 75 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFK---AAC---LEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDR 75 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeeh---hhh---HHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCc
Confidence 345555666677888877776666542210000 000 0112333334432 2234567777888774332 11
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 267 ---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 267 ---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
--+-+|++.+|+.+.+|+-|..+|.+|+.+.-++
T Consensus 76 ~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 76 SKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred ceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 2377899999999999999999999999986544
No 405
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=63.29 E-value=62 Score=30.67 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=77.2
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHH--HHHHHHHHhCC
Q 017811 186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA--IGQCSLVLGED 263 (365)
Q Consensus 186 k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A--~~~~~~aL~~~ 263 (365)
...|-.+...++|.-|..+|-+|++-+..-. ....... .+-.+-.|..-++..++. +-....+++.+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~------~~v~A~~-----sLKYMlLcKIMln~~ddv~~lls~K~~l~y~ 281 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLD------DDVKALT-----SLKYMLLCKIMLNLPDDVAALLSAKLALKYA 281 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccC------CcHHHHH-----HHHHHHHHHHHhcCHHHHHHHHhhHHHHhcc
Confidence 3466667777899999999999987664311 1111111 123344566666666654 44556788888
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 017811 264 ENNVKALFRRGKARAE--LGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 312 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~--l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~ 312 (365)
.....|+-..|.++.. +.+|+.|+.+|+.-|.-|| -++.++..++.
T Consensus 282 g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 282 GRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYD 329 (411)
T ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHH
Confidence 8999999999999876 6789999999998887665 55666655544
No 406
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.56 E-value=1e+02 Score=31.30 Aligned_cols=116 Identities=20% Similarity=0.080 Sum_probs=81.9
Q ss_pred hhhhhhhhh---hhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH--
Q 017811 186 KMDGNALFK---EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL-- 260 (365)
Q Consensus 186 k~~G~~~~~---~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL-- 260 (365)
...|..+|+ ...|.+|.+.|.-|....+.+....+... ....+..++.+|.++...|+.+-|.....++|
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~s-----sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~ 313 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLIS-----SPYHVDSLLQVADIFRFQGDREMAADLIERGLYV 313 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeecc-----CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 567777775 67799999999988877654322111000 01234457888999999998877776666654
Q ss_pred -----h--------------CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHH
Q 017811 261 -----G--------------EDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIARE 306 (365)
Q Consensus 261 -----~--------------~~p~n---~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~-n~~~~~~ 306 (365)
. +.|.| ..++||.-+.+...|-+.-|.++.+..+.++|. |+-..-.
T Consensus 314 ~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~ 382 (665)
T KOG2422|consen 314 FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILY 382 (665)
T ss_pred HHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHH
Confidence 1 12334 358889999999999999999999999999998 7654433
No 407
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.53 E-value=1.8e+02 Score=29.33 Aligned_cols=55 Identities=24% Similarity=0.128 Sum_probs=46.0
Q ss_pred hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCCc
Q 017811 246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE--------------------LGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 246 l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~--------------------l~~~~~A~~~l~~al~l~P~n 300 (365)
..+|.+|+....-.|+.|..|.+|.-.+-.-+.. -.+|-+|+.+|.+.+.++..|
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 4689999999999999999999988777666665 566888999999999887654
No 408
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.66 E-value=86 Score=31.51 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 017811 235 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 314 (365)
Q Consensus 235 ~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~ 314 (365)
|+..+-..+-....|.-....|+++|.+. .|--||+.+++||... .-+.-....++..+.+=++...-.+|....+..
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 45555556666667888889999999976 5888999999999999 556677888999999988888888888777765
Q ss_pred HHHHHHHHHHHhccc
Q 017811 315 KAVYKKQKEIYKGIF 329 (365)
Q Consensus 315 ~~~~~~~k~~y~kmf 329 (365)
+.. +....|+|++
T Consensus 146 k~s--k~a~~f~Ka~ 158 (711)
T COG1747 146 KKS--KAAEFFGKAL 158 (711)
T ss_pred chh--hHHHHHHHHH
Confidence 443 4445566553
No 409
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=59.13 E-value=59 Score=23.71 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=41.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017811 275 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 333 (365)
Q Consensus 275 ~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~ 333 (365)
..+..+..++=|+.++.-.|.-+|+|..+.........+.++. ++.|.+.|+..-
T Consensus 3 ~LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l----~~~Ye~~yGPLt 57 (78)
T PF12652_consen 3 ELLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQL----KKEYEKRYGPLT 57 (78)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH----HHHHHHHhCCCc
Confidence 3455667778899999999999999999999988776655554 444666665544
No 410
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=57.94 E-value=1.1e+02 Score=25.44 Aligned_cols=80 Identities=9% Similarity=-0.107 Sum_probs=58.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
+.........+..++.......--+-|.... +-.--+..++..|+|.+|+..++.+.+-.+..
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e-----------------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKE-----------------LDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccc-----------------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 3333344466666666666544444455433 24566889999999999999999999988887
Q ss_pred HHHHHHHHHHHHHcCCH
Q 017811 267 VKALFRRGKARAELGQT 283 (365)
Q Consensus 267 ~ka~~~~g~a~~~l~~~ 283 (365)
+-+---++.|+..+|+.
T Consensus 78 p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 78 PYGKALLALCLNAKGDA 94 (153)
T ss_pred hHHHHHHHHHHHhcCCh
Confidence 87777788999999995
No 411
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.70 E-value=52 Score=23.44 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhCCC
Q 017811 286 AREDFLKAGKFAPE 299 (365)
Q Consensus 286 A~~~l~~al~l~P~ 299 (365)
|+..|.+++...|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 33444444445554
No 412
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=57.27 E-value=27 Score=20.08 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 017811 252 AIGQCSLVLGEDENNVKALFRRGKARAE 279 (365)
Q Consensus 252 A~~~~~~aL~~~p~n~ka~~~~g~a~~~ 279 (365)
.+..+..+|..+|.|-.++..|-.++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 3566777777788877777766655544
No 413
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.26 E-value=2.8e+02 Score=29.88 Aligned_cols=105 Identities=18% Similarity=0.050 Sum_probs=77.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
..-.+-.+....+|.+|-....++....+.... +.. ..+......-.|.+....++++.|+..++.++..=|
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~-~~~-------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~ 489 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMH-SRQ-------GDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLP 489 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcc-cch-------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 334566677788888888888887776655211 111 122233344567788889999999999999998877
Q ss_pred CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 265 NN-----VKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 265 ~n-----~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
.+ .-++...|.+.+-.|++++|+...+.+.++.
T Consensus 490 ~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 490 EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 65 3578889999999999999999999998873
No 414
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.96 E-value=38 Score=33.51 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=51.2
Q ss_pred HHHhhhhhhhhhh--hhhHHHHHHH--HHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHH
Q 017811 182 ADRRKMDGNALFK--EEKLEEAMQQ--YEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257 (365)
Q Consensus 182 a~~~k~~G~~~~~--~~~y~~A~~~--y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~ 257 (365)
-.-+.+.|-.+.. .-+|+.|+++ .+.|+++...-.. ...|-.||...+..|+++-|..++.
T Consensus 307 ~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~---------------~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 307 KKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDD---------------PEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCST---------------HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCc---------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555555544443 3455666653 5566665533111 1137788888888888888888777
Q ss_pred HHHh--------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017811 258 LVLG--------EDENNVKALFRRGKARAELGQTDAAR 287 (365)
Q Consensus 258 ~aL~--------~~p~n~ka~~~~g~a~~~l~~~~~A~ 287 (365)
++=. .--.+...+-.++......|++.-|.
T Consensus 372 k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 372 KAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred hhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHH
Confidence 6422 22345666666666666666665554
No 415
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=56.35 E-value=1.2e+02 Score=27.93 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=50.9
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH-HHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG-QCSLV 259 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~-~~~~a 259 (365)
.+......-..++..|+|..|+..+..+-.....-.. ..|...| -.++.++..-+. -.+.+
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~---------------~~c~~~L---~~~L~e~~~~i~~~ld~~ 187 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKG---------------YSCVRHL---SSQLQETLELIEEQLDSD 187 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc---------------chHHHHH---hHHHHHHHHHHHHHHHHH
Confidence 3334444566788899999999988887776532111 0111111 112222211111 11111
Q ss_pred Hh-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017811 260 LG-E-DENNVKALFRRGKARAELGQTDAAREDFLKAG 294 (365)
Q Consensus 260 L~-~-~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al 294 (365)
|. + .--++..|-..=.||..+|+...+...+....
T Consensus 188 l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f 224 (291)
T PF10475_consen 188 LSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHF 224 (291)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11 0 12356778888889999998877776655543
No 416
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.85 E-value=65 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 271 FRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 271 ~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
.++|.-+-..|+|++|+..|+.+++
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444455666666666665554
No 417
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=55.64 E-value=28 Score=20.67 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=18.8
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhh
Q 017811 267 VKALFRRG--KARAELG-----QTDAAREDFLKAGKF 296 (365)
Q Consensus 267 ~ka~~~~g--~a~~~l~-----~~~~A~~~l~~al~l 296 (365)
+.|.|++| .+|..-. ++++|..+|+++.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35677777 4444433 367777777777654
No 418
>PF12854 PPR_1: PPR repeat
Probab=54.66 E-value=37 Score=20.04 Aligned_cols=27 Identities=22% Similarity=0.126 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811 266 NVKALFRRGKARAELGQTDAAREDFLK 292 (365)
Q Consensus 266 n~ka~~~~g~a~~~l~~~~~A~~~l~~ 292 (365)
|.-.|..+-.+|...|+.++|...|.+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 555666677777777777777776654
No 419
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.64 E-value=50 Score=33.14 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=52.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
..+..+...|+-+.|+..++.++. +. ..++..-+++-+|.|+.-+.+|..|-.++.....+.. .
T Consensus 272 ~~ar~l~~~g~~eaa~~~~~~~v~--~~-------------~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd-W 335 (546)
T KOG3783|consen 272 MEARILSIKGNSEAAIDMESLSIP--IR-------------MKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD-W 335 (546)
T ss_pred HHHHHHHHcccHHHHHHHHHhccc--HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-h
Confidence 345556666667777788877776 21 2455677899999999999999999999999888764 5
Q ss_pred HHHHHH
Q 017811 267 VKALFR 272 (365)
Q Consensus 267 ~ka~~~ 272 (365)
.+|+|.
T Consensus 336 S~a~Y~ 341 (546)
T KOG3783|consen 336 SHAFYT 341 (546)
T ss_pred hHHHHH
Confidence 556554
No 420
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.95 E-value=1.1e+02 Score=24.34 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH--hCCCCCHHHHHHHHHHH
Q 017811 200 EAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL--GEDENNVKALFRRGKAR 277 (365)
Q Consensus 200 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL--~~~p~n~ka~~~~g~a~ 277 (365)
.-...+++|+....++..+.... =|+.+-.-|..+-. .+...|.... .+--..+..|-.-|..+
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~nD~------------RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKNDE------------RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFL 109 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT-H------------HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhhcCCH------------HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 33556777777765543321111 15556556666555 6666666654 46677888888999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 017811 278 AELGQTDAAREDFLKAG 294 (365)
Q Consensus 278 ~~l~~~~~A~~~l~~al 294 (365)
...|++.+|.+.|++++
T Consensus 110 e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 110 EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhC
Confidence 99999999999999875
No 421
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=53.65 E-value=28 Score=20.16 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 017811 268 KALFRRGKARAEL----GQTDAAREDFLKAGK 295 (365)
Q Consensus 268 ka~~~~g~a~~~l----~~~~~A~~~l~~al~ 295 (365)
.+.+++|..|..- .+..+|..+|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3556666665532 256666666666654
No 422
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.57 E-value=1.1e+02 Score=30.78 Aligned_cols=65 Identities=23% Similarity=0.155 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhC---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCc
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGE---DEN----NVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPED 300 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~---~p~----n~ka~~~~g~a~~~l~~-~~~A~~~l~~al~l~P~n 300 (365)
++-+|.|+-.+|+...|..++..+++. ... .+-|+|-+|..|..++. ..+|.+++.+|-.-..++
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 667899999999999999999988832 222 35799999999999999 999999999998876543
No 423
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.53 E-value=1.7e+02 Score=28.35 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=42.2
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH--hcCHHHHHHHHH
Q 017811 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--LKRYEEAIGQCS 257 (365)
Q Consensus 183 ~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--l~~~~~A~~~~~ 257 (365)
..-...+..+|+.++|..|...|..++...+.... . -...++.+++.||.. .-+|.+|...++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~-------~-----~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVN-------H-----TFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhh-------h-----hHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34445677899999999999999999977543111 0 012346666666665 346777777776
No 424
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=53.38 E-value=1.4e+02 Score=29.19 Aligned_cols=102 Identities=12% Similarity=0.010 Sum_probs=67.3
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcC--------------H
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR--------------Y 249 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~--------------~ 249 (365)
+.+..|..+|-.++|+.|...|..+.+-+..|..+. ..+.++--.|.|.+..+. +
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~-----------~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~l 278 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWK-----------YLAGAQEMAALSLLMQGQSISAKIRKDEIEPYL 278 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHH-----------HHHhHHHHHHHHHHhcCCCCccccccccHHHHH
Confidence 467889999999999999999999988765543321 112334444555555442 3
Q ss_pred HHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 250 EEAIGQCSLV----LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 250 ~~A~~~~~~a----L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
+.|+..|.++ .....--..+.+..+.++...+.|.+|...+-+....
T Consensus 279 e~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 279 ENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 4444445542 2222244567778888888999998888877777655
No 425
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=53.15 E-value=1.3e+02 Score=29.76 Aligned_cols=100 Identities=9% Similarity=-0.052 Sum_probs=71.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
+--+|-.+-+++++.+|...|.+...-..+.... +...++.++-..-+-+++.+.-.......-+..|
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~------------lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~ 76 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFL------------LKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFG 76 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHH------------HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 3457888889999999999999988766554221 1223455655555556666665555555556678
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 265 NNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 265 ~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
..+...+..|...++.++|.+|+..+..-...
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 88888899999999999999999887655443
No 426
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=52.41 E-value=1.4e+02 Score=26.72 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=69.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH
Q 017811 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 268 (365)
Q Consensus 189 G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k 268 (365)
...+.+.+...+||..-+.-++-.|.+.. +...+-..+.-.|+|.+|..-|+-+-++.|+..+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~-----------------~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAG-----------------GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcccc-----------------chhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34678889999999999999998888643 2444555677799999999999999999998754
Q ss_pred --HHHH-HHHHHHH-------------cC-CHHHHHHHHHHHHhhCCC-cHHHHHHHH
Q 017811 269 --ALFR-RGKARAE-------------LG-QTDAAREDFLKAGKFAPE-DKSIARELR 308 (365)
Q Consensus 269 --a~~~-~g~a~~~-------------l~-~~~~A~~~l~~al~l~P~-n~~~~~~l~ 308 (365)
-+|+ +-.|-.. +| ...+=+..+..++.++.+ ..++...++
T Consensus 71 ~a~lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alr 128 (273)
T COG4455 71 GASLYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALR 128 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHH
Confidence 2222 2222111 12 445566667777777665 334443333
No 427
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=51.90 E-value=23 Score=19.59 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=16.8
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
|..+-.+|.+.|++++|...+++-.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55566667777777777776665443
No 428
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=51.74 E-value=74 Score=32.10 Aligned_cols=48 Identities=4% Similarity=-0.096 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 248 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 248 ~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
-++++..+|++.+..-|..+.+|--.....++.++|+.-...|.+||.
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555554
No 429
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=51.13 E-value=1.4e+02 Score=30.48 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 315 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~ 315 (365)
+.....-..+.|++..+.-.+++++.-...+.+.|++.+.-....|+.+-|...+.++.++.-........+...-+...
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 55556677789999999999999998888899999999999999999999998888888876554444444433333333
Q ss_pred HHHHHHHHHHhcccCCCCCccccchhHHHHHHHHHHHH
Q 017811 316 AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLV 353 (365)
Q Consensus 316 ~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~ 353 (365)
..-...+..++++-+.-|+.-. -.++.+-|.++.|.+
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~-~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVE-VVLRKINWERRKGNL 416 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhh-hHHHHHhHHHHhcch
Confidence 3334566667777766643322 334455666655543
No 430
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=50.25 E-value=70 Score=30.60 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=41.5
Q ss_pred hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017811 246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 291 (365)
Q Consensus 246 l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~ 291 (365)
....-+|+...+.++..+|.|......+.+.|..+|-...|...|.
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456788889999999999999999999999999999999988875
No 431
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=48.35 E-value=48 Score=31.07 Aligned_cols=94 Identities=7% Similarity=-0.045 Sum_probs=63.1
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 259 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 259 aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
+...-|++++.|...+.-..+.+-|.+-...|..++.++|.|.+++-....-.-.....-+..|.+|.+-+.-.+.++.-
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 33446788998888888788888999999999999999999988765533333334444557788888877665544432
Q ss_pred -chhHHHHHHHHHHH
Q 017811 339 -KNWLIIFWQLLVSL 352 (365)
Q Consensus 339 -~~~~~~~~~~~~~~ 352 (365)
-.|...-+-|...+
T Consensus 179 w~eyfr~El~yiTKL 193 (435)
T COG5191 179 WIEYFRMELMYITKL 193 (435)
T ss_pred HHHHHHHHHHHHHHH
Confidence 33333333333333
No 432
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.53 E-value=2.2e+02 Score=27.04 Aligned_cols=99 Identities=15% Similarity=0.012 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhccchhhhh----hhh----HHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC--H
Q 017811 198 LEEAMQQYEMAIAYMGDDFMFQL----FGK----YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN--V 267 (365)
Q Consensus 198 y~~A~~~y~~al~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n--~ 267 (365)
..+|.+.+++|++....++.... .+. ....-..+..-+--.||+|--++|+..+|+.-++...+..|-. .
T Consensus 232 i~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~l 311 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTML 311 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHH
Confidence 44677777777766544332110 000 0001111222334567999999999999999999888877732 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 268 KALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
..+-++-.+++.+.-|.+....+-+.-.+
T Consensus 312 niheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 312 NIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 23445556666666665555555544443
No 433
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.23 E-value=95 Score=31.84 Aligned_cols=75 Identities=23% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHH
Q 017811 241 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA--------PEDKSIARELRLLAE 312 (365)
Q Consensus 241 ~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~--------P~n~~~~~~l~~l~~ 312 (365)
.+.+++|+++.|..... +.++..=|-.+|.+.+..+++..|.++|.++..+. -+|.+....++...+
T Consensus 645 elal~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 45668888888865433 33567778889999999999999999999987653 245665555555545
Q ss_pred HHHHHHHH
Q 017811 313 HEKAVYKK 320 (365)
Q Consensus 313 ~~~~~~~~ 320 (365)
+.+..+-+
T Consensus 720 ~~g~~N~A 727 (794)
T KOG0276|consen 720 KQGKNNLA 727 (794)
T ss_pred hhcccchH
Confidence 44444333
No 434
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.93 E-value=42 Score=24.56 Aligned_cols=21 Identities=14% Similarity=-0.069 Sum_probs=8.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHH
Q 017811 239 MAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 239 la~~~~kl~~~~~A~~~~~~a 259 (365)
.|.++-..|..+.|+.+|+++
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~g 34 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKG 34 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHH
Confidence 333333334444444444443
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.60 E-value=40 Score=30.24 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH-hcCHHHHHHHHHHHH
Q 017811 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSLVL 260 (365)
Q Consensus 198 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~aL 260 (365)
...|...|++|+.+...+.. ....++..+.+|.+..|+. +|+.++|+..+++|+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~---------~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELP---------PTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSC---------TTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccC---------CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 46788889998877643110 0023355667788777755 789999998888775
No 436
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=44.83 E-value=75 Score=22.53 Aligned_cols=15 Identities=27% Similarity=0.138 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHHHH
Q 017811 280 LGQTDAAREDFLKAG 294 (365)
Q Consensus 280 l~~~~~A~~~l~~al 294 (365)
.|+|++|+..|..++
T Consensus 19 ~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 19 DGNYEEALELYKEAL 33 (75)
T ss_pred cCCHHHHHHHHHHHH
Confidence 355554444444443
No 437
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=44.47 E-value=47 Score=18.61 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=17.1
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
|+.+-.+|.+.|++++|...+.....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555667777777777777766543
No 438
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.45 E-value=1.2e+02 Score=30.04 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
+++|+.+.|...+. ..++..-|-++|.+.+..|+++-|..+|+++-.
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 46677776655432 234778999999999999999999999998744
No 439
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.00 E-value=94 Score=33.02 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=28.6
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
++.++.-|+.+|++|+|++|...|-++|.....
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 445778899999999999999999999987754
No 440
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=43.36 E-value=1e+02 Score=25.65 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=47.2
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc-chhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHH
Q 017811 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD-DFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 258 (365)
Q Consensus 180 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~ 258 (365)
.........+|.+++.|+...|....+-+-.-..- ....++.. .....+.|..++..|+|.+|...+..
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~----------~~~av~~A~~ll~~~k~~eA~~aL~~ 142 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQ----------TPAAVKQAAALLDEGKYYEANAALKQ 142 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHH----------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHh----------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34567788999999999999999887655221110 00001100 11257899999999999999998888
Q ss_pred HHh
Q 017811 259 VLG 261 (365)
Q Consensus 259 aL~ 261 (365)
++.
T Consensus 143 A~~ 145 (155)
T PF10938_consen 143 ALD 145 (155)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
No 441
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.18 E-value=34 Score=32.60 Aligned_cols=54 Identities=19% Similarity=0.141 Sum_probs=45.0
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGED--------ENNVKALFRRGKARAELGQTDAARED 289 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~--------p~n~ka~~~~g~a~~~l~~~~~A~~~ 289 (365)
+...|.-++.++++++|...+..|..+- -++..++|.+|.+++.+++++.+.-.
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677888889999999999999988653 24678999999999999999877633
No 442
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.72 E-value=2.5e+02 Score=30.96 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=71.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHH------HHHhhccchhhhhhhhHHHHHHH-hhchhhhHHHHHHHHhcCHHHHHHHHHHH
Q 017811 187 MDGNALFKEEKLEEAMQQYEM------AIAYMGDDFMFQLFGKYRDMALA-VKNPCHLNMAACLLKLKRYEEAIGQCSLV 259 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~------al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~kl~~~~~A~~~~~~a 259 (365)
+.|+.....+-|++|...|.+ |+..+-.+... .+...+.... -...++..+|.+.+..+...+|++.|-+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~--ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGS--LDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhh--HHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 467888888889999888765 44444332110 0000000000 11346899999999999999999998765
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 260 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 260 L~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
+++..|...-.+....|.|++-+.++..|-+.
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 56677888888888899999998888887764
No 443
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=42.66 E-value=1.8e+02 Score=28.71 Aligned_cols=124 Identities=16% Similarity=0.053 Sum_probs=73.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh------hh----hhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH
Q 017811 185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ------LF----GKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 254 (365)
Q Consensus 185 ~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~ 254 (365)
....|...+..+++.+|+.....||+..-.-.... -. ....+....-...++. +. +-..=+...++.
T Consensus 34 ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~--a~-fg~~le~a~Cl~ 110 (471)
T KOG4459|consen 34 AYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYL--AI-FGHLLERAACLR 110 (471)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHH--HH-HHHHHHHHHHHH
Confidence 34566777777788888888888876542100000 00 0000000000000111 11 112223455666
Q ss_pred HHHHHHhCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 255 QCSLVLGEDENN----------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 255 ~~~~aL~~~p~n----------~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
-|...+.-.|.. ...|-++-.||.+.|++..|++.-...+--+|++..+.+.+..-.
T Consensus 111 rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 111 RCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 677666555544 367888999999999999999999999999999999888877554
No 444
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=40.68 E-value=56 Score=18.44 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=16.4
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
|..+-.++.+.|+++.|...++.-.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5566667777777777776666543
No 445
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=40.53 E-value=78 Score=24.68 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 017811 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM 212 (365)
Q Consensus 170 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~ 212 (365)
.+..++..-+..|..+..+|..++..|+.+.|--.|.+.+.+.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999998887
No 446
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.06 E-value=73 Score=25.38 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccc
Q 017811 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD 215 (365)
Q Consensus 176 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~ 215 (365)
+++...-......|..+...|++.+|+.+|-+||...|..
T Consensus 57 ~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 57 EEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 3444445566789999999999999999999999999874
No 447
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=39.44 E-value=4.4e+02 Score=27.00 Aligned_cols=156 Identities=10% Similarity=-0.050 Sum_probs=90.5
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchh-h--------hhhh---hHH--HHHHHhh----chhhhHHHHHH
Q 017811 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-F--------QLFG---KYR--DMALAVK----NPCHLNMAACL 243 (365)
Q Consensus 182 a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~-~--------~~~~---~~~--~~~~~~~----~~~~~nla~~~ 243 (365)
...++.-..--.+.|++......|.+|+.-+..-.. + .... ... .....+. ..+++--|..-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 344555555556678888888888887654432100 0 0000 000 0000000 11233334444
Q ss_pred HHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCCc---HHHHHHHHHHHHHHHHH
Q 017811 244 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE---DFLKAGKFAPED---KSIARELRLLAEHEKAV 317 (365)
Q Consensus 244 ~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~---~l~~al~l~P~n---~~~~~~l~~l~~~~~~~ 317 (365)
-..|++..|...++...+..|+.+.+-++.......+|+.+.+.. .+.....-.-++ ....-.+.++....+..
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 457799999999999998779999999999999999999888873 333332211111 22223344555556666
Q ss_pred HHHHHHHHhcccCCCCCccc
Q 017811 318 YKKQKEIYKGIFGPRPEPKQ 337 (365)
Q Consensus 318 ~~~~k~~y~kmf~~~~~~~~ 337 (365)
....+.+...|.+..+.+++
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKV 476 (577)
T ss_pred HHHHHHHHHHhhhcCCccHH
Confidence 66777777777777776553
No 448
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.27 E-value=1.5e+02 Score=21.46 Aligned_cols=14 Identities=7% Similarity=-0.073 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhCC
Q 017811 285 AAREDFLKAGKFAP 298 (365)
Q Consensus 285 ~A~~~l~~al~l~P 298 (365)
+|+..|..+++..|
T Consensus 31 ~aie~l~~~lk~e~ 44 (77)
T cd02683 31 EGIDLLMQVLKGTK 44 (77)
T ss_pred HHHHHHHHHHhhCC
Confidence 34444444554444
No 449
>PRK11619 lytic murein transglycosylase; Provisional
Probab=38.77 E-value=2e+02 Score=30.01 Aligned_cols=54 Identities=11% Similarity=-0.045 Sum_probs=42.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
.-+..++|+.+...+...-.........+|++|+++..+|+-++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444788998877777664333345678999999999999999999999998754
No 450
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.64 E-value=2.7e+02 Score=29.58 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=23.7
Q ss_pred hcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017811 246 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 292 (365)
Q Consensus 246 l~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~ 292 (365)
.++|.+|+...+..-... .-.+.|=..+.-|..+|+|+-|...|.+
T Consensus 745 akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred hhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHh
Confidence 455666655544332211 1223333566667777777666665543
No 451
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.56 E-value=75 Score=27.29 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=41.2
Q ss_pred hhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 017811 231 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL 280 (365)
Q Consensus 231 ~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l 280 (365)
++..+.--||.+-++.|+|..|...|.++.. |...+....+|+++.+.+
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 4566677899999999999999999999887 777788888888887654
No 452
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.11 E-value=1.4e+02 Score=20.66 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 271 FRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 271 ~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
...|.-+-..|+|++|+..|..++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444455666665555555544
No 453
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=36.42 E-value=2.3e+02 Score=22.84 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=56.8
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhh
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDEN---------------NVKALFRRGKARAELGQTDAAREDFLK----AGKF 296 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~---------------n~ka~~~~g~a~~~l~~~~~A~~~l~~----al~l 296 (365)
+.++|.-.++.+++-.++-.|.+||.+-.+ .+-...++|.-+..+|+-+-.+++++. ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 668888889999999999999998854211 233667899999999999999999874 4556
Q ss_pred CCC--c---HHHHHHHHHHHHHH
Q 017811 297 APE--D---KSIARELRLLAEHE 314 (365)
Q Consensus 297 ~P~--n---~~~~~~l~~l~~~~ 314 (365)
-|. + ......|+-|+..+
T Consensus 84 iPQCp~~~C~afi~sLGCCk~AL 106 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKAL 106 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHH
Confidence 664 2 33455555554443
No 454
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=36.40 E-value=1.7e+02 Score=29.64 Aligned_cols=95 Identities=19% Similarity=0.041 Sum_probs=45.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHhh---CCCcHHHHHHHHH
Q 017811 239 MAACLLKLKRYEEAIGQCSLVLG--EDENNVKALFRRGKARAELGQTDAAREDF----LKAGKF---APEDKSIARELRL 309 (365)
Q Consensus 239 la~~~~kl~~~~~A~~~~~~aL~--~~p~n~ka~~~~g~a~~~l~~~~~A~~~l----~~al~l---~P~n~~~~~~l~~ 309 (365)
-....+..++|+.....+.++|. ++=+-++.|. ..+..-.+....+.... .-++.. ++..-.++.....
T Consensus 59 yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl--~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~ 136 (656)
T KOG1914|consen 59 YIERELASKDFESVEKLFSRCLVKVLNLDLWKLYL--SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYIN 136 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHH--HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHH
Confidence 34445566778877777777663 2211223222 22333344443344333 333332 3333344443322
Q ss_pred HHH--------HHHHHHHHHHHHHhcccCCCCCc
Q 017811 310 LAE--------HEKAVYKKQKEIYKGIFGPRPEP 335 (365)
Q Consensus 310 l~~--------~~~~~~~~~k~~y~kmf~~~~~~ 335 (365)
..+ ...+.-.+.|..|++++..+..+
T Consensus 137 FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 137 FLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 211 22334456777788887666643
No 455
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.28 E-value=3e+02 Score=25.49 Aligned_cols=105 Identities=13% Similarity=0.017 Sum_probs=63.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
..|+.+|..++|.+-.+...+.-..+..+. +++....-.....+|.---..|-..++..+-...|.++|.+...-
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~ed-----GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTED-----GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhcccc-----CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 478889998888876666555544433211 111111111112234444556777777777778888888776543
Q ss_pred HHHHH------HHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 267 VKALF------RRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 267 ~ka~~------~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
+..+. .=|+.++.-|+|++|..+|-.|++-
T Consensus 225 PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 225 PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 32221 2356788889999999999888864
No 456
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=36.24 E-value=3e+02 Score=26.35 Aligned_cols=126 Identities=18% Similarity=0.148 Sum_probs=78.8
Q ss_pred HHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHh----CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q 017811 228 ALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG----ED--ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-- 299 (365)
Q Consensus 228 ~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~----~~--p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~-- 299 (365)
..-++..+-..|...|+..++|.+|+......+. +| +.-+..+..-.++|+.+.+..+|...+..|-...-.
T Consensus 123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY 202 (411)
T KOG1463|consen 123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY 202 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc
Confidence 3456667788999999999999999998887763 33 334667888889999999999999999877664311
Q ss_pred -cHHHHHHH----HHHHHHHHHHHHHHHHHHhcccCCCCCccccchhHHHHHHHHHHHH
Q 017811 300 -DKSIAREL----RLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLV 353 (365)
Q Consensus 300 -n~~~~~~l----~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~~~~~~~~~~~~~~~~ 353 (365)
.+..+..+ +.++...++++-...-.|...-+.....++.++...+.+-.|-.|+
T Consensus 203 cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIM 261 (411)
T KOG1463|consen 203 CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIM 261 (411)
T ss_pred cCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHH
Confidence 12333222 2333334666655555444443334434434554444443333333
No 457
>PF13041 PPR_2: PPR repeat family
Probab=35.83 E-value=1.2e+02 Score=19.29 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
.|..+-.+|...|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444455555555555555554443
No 458
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.44 E-value=71 Score=31.12 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=46.2
Q ss_pred hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC--cHHHHHHHHHH
Q 017811 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPE--DKSIARELRLL 310 (365)
Q Consensus 237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~-~~~A~~~l~~al~l~P~--n~~~~~~l~~l 310 (365)
+..|.+|+-+++|.+|+..+..+|-.=..-.+.+-+.+.++-..++ ++.-...+..|+.+.|. |..+...++.+
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek 352 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEK 352 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHH
Confidence 6678888888888888888888775422222333455555555544 45555666778888885 34455555443
No 459
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.64 E-value=4.1e+02 Score=25.33 Aligned_cols=106 Identities=14% Similarity=0.032 Sum_probs=56.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccchhh-hhh-hhHH---HHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 017811 192 LFKEEKLEEAMQQYEMAIAYMGDDFMF-QLF-GKYR---DMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 266 (365)
Q Consensus 192 ~~~~~~y~~A~~~y~~al~~~~~~~~~-~~~-~~~~---~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n 266 (365)
.++..+...-|+.-..|++++|.+... -+. +++. .....+...++--.-.||.+.++...--...+...+.| .|
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRD-tn 272 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRD-TN 272 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcc-cc
Confidence 345556666677777888888875432 111 1111 11122222222222223332222111111122233333 46
Q ss_pred HHHHH--HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017811 267 VKALF--RRGKARAELGQTDAAREDFLKAGKFAP 298 (365)
Q Consensus 267 ~ka~~--~~g~a~~~l~~~~~A~~~l~~al~l~P 298 (365)
+..|. |+|.|-..+|+..+|.+.++...+--|
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 66554 788999999999999999998877666
No 460
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.44 E-value=4.7e+02 Score=27.11 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=10.4
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 017811 276 ARAELGQTDAAREDFLKA 293 (365)
Q Consensus 276 a~~~l~~~~~A~~~l~~a 293 (365)
||..+|++++++..+...
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 555566666666555544
No 461
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=34.41 E-value=2.1e+02 Score=21.92 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 282 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~ 282 (365)
.+..|..-+-.|+|..|.....++-+..+...-+|.--|++-..+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 55667777788888888888888877766666666666777666654
No 462
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.27 E-value=99 Score=32.32 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=30.6
Q ss_pred hchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH
Q 017811 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDA 285 (365)
Q Consensus 232 ~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~ 285 (365)
+-.++.|+|..+..+.+|.+|..+|.+.=... +...||+++..|++
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--------~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--------NQIECLYRLELFGE 840 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------hHHHHHHHHHhhhh
Confidence 34567788888888888888888887653322 34456666666654
No 463
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.14 E-value=4.4e+02 Score=25.22 Aligned_cols=117 Identities=10% Similarity=-0.050 Sum_probs=63.8
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhh--hhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHH--
Q 017811 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG-- 254 (365)
Q Consensus 179 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~-- 254 (365)
.+...-+.-.|-.|+...+++.|.-.+++|.........+- ..++...++.. .+.--|++..... ..+++.
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds--~k~~~N~~~~~ae---~s~~i~n~ 196 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDS--SKHNINMERSRAE---VSEILNNT 196 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCchhHHHHH---HHHHHHHH
Confidence 34455566677888888888888888888876654322211 11111111111 1112233222222 111221
Q ss_pred HHHHHHhC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 017811 255 QCSLVLGE----DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 300 (365)
Q Consensus 255 ~~~~aL~~----~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n 300 (365)
+..-+++. +=.|+-+-|++|..+...+++.++...+..++-+.|+.
T Consensus 197 Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 197 YSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 01111211 22467777888888888888888888888888888873
No 464
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.12 E-value=2.5e+02 Score=28.36 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCH-HHHHHHHHHHHhCCCCCHH----
Q 017811 194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY-EEAIGQCSLVLGEDENNVK---- 268 (365)
Q Consensus 194 ~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~-~~A~~~~~~aL~~~p~n~k---- 268 (365)
+...+..|....+.||....+........+........ ..+|+..-.......++ .......+..+...|+.++
T Consensus 302 K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~-i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~rp 380 (593)
T KOG2460|consen 302 KLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQI-ILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKLRP 380 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchH-HHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCcccccccCH
Q ss_pred -------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 269 -------------------------------------------ALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 269 -------------------------------------------a~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
--|.+|.+|...++|.+|+..|.+|..
T Consensus 381 qdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~s 450 (593)
T KOG2460|consen 381 QDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYS 450 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=32.97 E-value=1.2e+02 Score=27.38 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHH-hcCHHHHHHHHHHHH
Q 017811 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSLVL 260 (365)
Q Consensus 198 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~aL 260 (365)
-+.|...|+.|+.+...... . ...++..+.+|.+..|+. +++.++|+....+++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~----p-----t~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELP----P-----THPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCC----C-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45788999999887432100 0 022345567787777776 488888887766665
No 466
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.83 E-value=87 Score=30.55 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=39.8
Q ss_pred hHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 237 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVK-------ALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 237 ~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~k-------a~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
..|-..|.-+|++. | ..+.++++|...- .=|..|-||+.+++|.+|+..|-.+|-
T Consensus 239 ~GLlR~H~lLgDhQ-a---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQ-A---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHhhhhH-h---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666688954 4 5566777775432 338899999999999999998887763
No 467
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.71 E-value=4.3e+02 Score=33.23 Aligned_cols=107 Identities=16% Similarity=0.002 Sum_probs=69.9
Q ss_pred HHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhhCCCc
Q 017811 229 LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL----GQ----TDAAREDFLKAGKFAPED 300 (365)
Q Consensus 229 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l----~~----~~~A~~~l~~al~l~P~n 300 (365)
....+..+.-.|..+.++|++++|-..|..|++++-.-.|+|+.=|.-+.+. .. -..|+.+|-+|.... ++
T Consensus 2808 ~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~ 2886 (3550)
T KOG0889|consen 2808 DRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NS 2886 (3550)
T ss_pred hHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cc
Confidence 3344556778899999999999999999999999988899998877655442 21 245777777777665 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 017811 301 KSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 338 (365)
Q Consensus 301 ~~~~~~l~~l~~~~~~~~~~~k~~y~kmf~~~~~~~~~ 338 (365)
..++..+.++.-.+.-..... ...++|++-....+.
T Consensus 2887 skaRk~iakvLwLls~dda~~--~l~~~~~k~l~~ip~ 2922 (3550)
T KOG0889|consen 2887 SKARKLIAKVLWLLSFDDSLG--TLGDVFDKFLGEIPV 2922 (3550)
T ss_pred hhhHHHHHHHHHHHHhccccc--hHHHHHHHhhccCCc
Confidence 556666666644333322221 344444444443333
No 468
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.70 E-value=1.4e+02 Score=28.59 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHH
Q 017811 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 253 (365)
Q Consensus 177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~ 253 (365)
.+-..+..+...|+..+..++|..|...|..|..+...-+.-. ..+ ...+++-.|..+++++++...+
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~----~~e-----~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEK----HLE-----TFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhh----HHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788899999999999999999999999999876432110 000 1123555666666666655544
No 469
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.43 E-value=84 Score=18.67 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhCCC
Q 017811 283 TDAAREDFLKAGKFAPE 299 (365)
Q Consensus 283 ~~~A~~~l~~al~l~P~ 299 (365)
++.|...|++.+...|+
T Consensus 3 ~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE 19 (32)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 44444555555444443
No 470
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=32.07 E-value=1.3e+02 Score=23.96 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=12.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 273 RGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 273 ~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
+|..++..|++++|...|-+|+.+.|+
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 444444444445555545555544444
No 471
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=32.02 E-value=4.6e+02 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
|+|+.|..+...++|-+++..|+.|..
T Consensus 254 A~y~~a~~~~~~~k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 254 AHLHMGKQSEEQQKMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 566777777766777777777766655
No 472
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=31.78 E-value=3.6e+02 Score=23.80 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHh-cCHHHHHHHHHH-HH-hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 235 CHLNMAACLLKL-KRYEEAIGQCSL-VL-GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 235 ~~~nla~~~~kl-~~~~~A~~~~~~-aL-~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
+..+-|..|... ..|-+++..+-. +| .-||....++...|.+...+-++-.-+-+=-.-+-..|-+.-+...++.++
T Consensus 27 ~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK 106 (215)
T cd07642 27 AIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVK 106 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhH
Confidence 344555555543 346667776666 33 456667789999999999888876654333223334576666666787776
Q ss_pred HHHHHHHHHHHHHHhccc
Q 017811 312 EHEKAVYKKQKEIYKGIF 329 (365)
Q Consensus 312 ~~~~~~~~~~k~~y~kmf 329 (365)
...++.-++.++.|..++
T Consensus 107 ~d~KK~fdK~~~dyE~~~ 124 (215)
T cd07642 107 GDLKKPFDKAWKDYETKV 124 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555566666677665
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.71 E-value=93 Score=26.86 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 017811 275 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 311 (365)
Q Consensus 275 ~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l~ 311 (365)
.+++..|+|++|.+.|++... +|++...+..|..+-
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 467888899999999998888 887766666666553
No 474
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.02 E-value=4.1e+02 Score=24.11 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017811 264 ENNVKALFRRGKARAELGQTDAAREDFL 291 (365)
Q Consensus 264 p~n~ka~~~~g~a~~~l~~~~~A~~~l~ 291 (365)
-.++.-+...|..|..-++|.+|...|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3577888888888888888888877664
No 475
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.63 E-value=71 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=17.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 273 RGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 273 ~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
.|..--..|+|++|+..|..+++.
T Consensus 12 ~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 12 QAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHhhHhhhHHHHHHHHHHHHHH
Confidence 333444578888888888888875
No 476
>COG1278 CspC Cold shock proteins [Transcription]
Probab=30.34 E-value=85 Score=22.15 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=27.5
Q ss_pred ecCCCC-CCCCC-CEEEEEEEEEEcCCCeeeccCcCCCCcceeecCCC
Q 017811 60 KEGHGQ-KPSKY-STCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKE 105 (365)
Q Consensus 60 ~~G~g~-~p~~g-~~v~v~y~~~~~~~g~~fd~s~~~~~p~~f~lg~~ 105 (365)
..|-|. .|..| ..|.|||...-.+ | ..+..+++.++|.+..|
T Consensus 12 ~KGfGFI~p~~G~~DvFVH~Sai~~~-g---~~~L~eGQ~V~f~~~~g 55 (67)
T COG1278 12 TKGFGFITPEDGGKDVFVHISAIQRA-G---FRTLREGQKVEFEVEQG 55 (67)
T ss_pred CCcceEcCCCCCCcCEEEEeeeeccC-C---CcccCCCCEEEEEEecC
Confidence 456677 78887 5899999876544 2 12334566677777655
No 477
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=29.73 E-value=2e+02 Score=22.03 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 175 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
...+.+.+...-.+|-..+-.|+|..|.+...++-+..+.
T Consensus 52 ~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 52 RRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3456777888889999999999999999999999776443
No 478
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=29.50 E-value=55 Score=36.79 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
+-..++..|..|+.++-.|+|.+|+..|..|+.....
T Consensus 238 ~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~ 274 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS 274 (1185)
T ss_pred hhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999988854
No 479
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=29.33 E-value=1.7e+02 Score=21.11 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 017811 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM 212 (365)
Q Consensus 173 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~ 212 (365)
....+.++.|..+...|..++++|++..|+.++.=|--++
T Consensus 26 ~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 26 DAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999887665554
No 480
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=28.42 E-value=1.6e+02 Score=24.32 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHhhccc
Q 017811 174 TVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDD 215 (365)
Q Consensus 174 ~~~e~~~~a~~~k~~G~~~~~~~-~y~~A~~~y~~al~~~~~~ 215 (365)
+.+++...-......|..+...| ++.+|..+|-+||...|..
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 44555555666778999999999 9999999999999999874
No 481
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.57 E-value=3.3e+02 Score=25.70 Aligned_cols=70 Identities=23% Similarity=0.189 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHH-HHHHH
Q 017811 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF-RRGKA 276 (365)
Q Consensus 198 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~-~~g~a 276 (365)
..+||.+-++|+..+... .++-|.-+ |..|++||..+|+...++.|+-- -++++
T Consensus 7 l~kaI~lv~kA~~eD~a~--------------------nY~eA~~l-----Y~~aleYF~~~lKYE~~~~kaKd~IraK~ 61 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAK--------------------NYEEALRL-----YQNALEYFLHALKYEANNKKAKDSIRAKF 61 (439)
T ss_pred HHHHHHHHHHHhhhcchh--------------------chHHHHHH-----HHHHHHHHHHHHHhhhcChhHHHHHHHHH
Confidence 456788888887764331 22222222 66788888888888877776543 46777
Q ss_pred HHHcCCHHHHHHHHHH
Q 017811 277 RAELGQTDAAREDFLK 292 (365)
Q Consensus 277 ~~~l~~~~~A~~~l~~ 292 (365)
...|.+-++-..+|+.
T Consensus 62 ~EYLdRAEkLK~yL~~ 77 (439)
T KOG0739|consen 62 TEYLDRAEKLKAYLKE 77 (439)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777776666555554
No 482
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.44 E-value=1.9e+02 Score=24.58 Aligned_cols=31 Identities=19% Similarity=-0.115 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 017811 234 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 264 (365)
Q Consensus 234 ~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p 264 (365)
.++.+++.++..+|+.++|.....++..+.|
T Consensus 145 ~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 145 NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3588999999999999999999999999999
No 483
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=27.08 E-value=71 Score=33.48 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=63.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCH
Q 017811 188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV 267 (365)
Q Consensus 188 ~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ 267 (365)
.-+.+...++|..++.-..-|+...|.- .++++.++.||.-++.++-|+.+..-+...+|.++
T Consensus 99 s~~m~~~l~~~~~~~~E~~la~~~~p~i-----------------~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 99 SCYMQLGLGEYPKAIPECELALESQPRI-----------------SKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred HHHhhcCccchhhhcCchhhhhhccchH-----------------HHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 3445567889999999999999888763 34578899999999999999999888999999997
Q ss_pred HHHHHHHHHHHHcCCHHHH
Q 017811 268 KALFRRGKARAELGQTDAA 286 (365)
Q Consensus 268 ka~~~~g~a~~~l~~~~~A 286 (365)
.+.-.....+.-+..++-+
T Consensus 162 ~~~eif~elk~ll~~~d~~ 180 (748)
T KOG4151|consen 162 SASEIFEELKGLLELKDLA 180 (748)
T ss_pred hHHHHHHHHHHHHhhcCCc
Confidence 7766555555444444433
No 484
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.06 E-value=2.3e+02 Score=19.42 Aligned_cols=58 Identities=19% Similarity=0.059 Sum_probs=36.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHH
Q 017811 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 255 (365)
Q Consensus 187 ~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~ 255 (365)
..|..+|..|+|-+|-+..+.+-...+.+. + .-++.-+..-.|..+.+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~--------~---~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPE--------R---DFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCH--------H---HHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcch--------H---HHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 467889999999999999888765444321 1 112222344556666777888887654
No 485
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=24.65 E-value=3.8e+02 Score=25.55 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
|+|..|..+...++|-+|+..|+.|..
T Consensus 241 A~y~~A~~~~~~~~~G~aia~L~~A~~ 267 (377)
T PF03097_consen 241 AHYHQALAAEEAKKYGEAIARLRRAEE 267 (377)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 778888888888888777777776654
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=24.54 E-value=4e+02 Score=28.34 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhc
Q 017811 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 213 (365)
Q Consensus 178 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~ 213 (365)
.++.|-.+...+|.+.+.=.-.--.+.+.+||.++.
T Consensus 721 q~daainhfiea~~~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 721 QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHH
Confidence 456666777888877776666666666666666554
No 487
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.23 E-value=1.4e+03 Score=28.04 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=58.3
Q ss_pred hchhhhHHHHHHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017811 232 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 297 (365)
Q Consensus 232 ~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~ 297 (365)
...+|++.|..--+.|.++.|-.+.-.|.+.. -+.++.-+|+.+-..|+-..|+..++..++++
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46689999999999999999999999998887 57899999999999999999999999999764
No 488
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=24.09 E-value=2.7e+02 Score=19.75 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 017811 272 RRGKARAELGQTDAAREDFLKAGK 295 (365)
Q Consensus 272 ~~g~a~~~l~~~~~A~~~l~~al~ 295 (365)
..|.-.-..|+|++|+..|..+++
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444455565555555555443
No 489
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.62 E-value=1.2e+02 Score=29.47 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHhC
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLGE 262 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~~ 262 (365)
..|+|.||-.+++|+.|+.+|++.|.+
T Consensus 25 ~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 25 SVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 678999999999999999999998854
No 490
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=23.62 E-value=2e+02 Score=27.79 Aligned_cols=61 Identities=15% Similarity=-0.067 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhC--CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017811 238 NMAACLLKLKRYEEAIGQCSLVLGE--DE--------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 299 (365)
Q Consensus 238 nla~~~~kl~~~~~A~~~~~~aL~~--~p--------~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~ 299 (365)
-+-..|+++++++-+....+ |.+. -| .-+-.+|.+|.+|+...++.+|...+..|+...|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lk-a~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLK-ASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHH-hcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 34567899999987665444 3322 11 23457899999999999999999999999999887
No 491
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=23.09 E-value=1e+02 Score=29.84 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 017811 249 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 283 (365)
Q Consensus 249 ~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~ 283 (365)
...|+.++++|-. .+.+..|.+.|-|++.+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 4566677776665 34677888888888888873
No 492
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.03 E-value=6.9e+02 Score=30.35 Aligned_cols=103 Identities=17% Similarity=0.049 Sum_probs=67.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHH
Q 017811 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 260 (365)
Q Consensus 181 ~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL 260 (365)
.++.|...|...-+.|.++.|-...-+|.+..+. .++.-+|.-.-+.|+-..|+...+..+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~-------------------~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRLP-------------------EIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-------------------hHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3444555555555677777777777776665432 357888899999999999999999988
Q ss_pred hCC-C----------CCH------HHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCcHH
Q 017811 261 GED-E----------NNV------KALFRRGKARAELGQT--DAAREDFLKAGKFAPEDKS 302 (365)
Q Consensus 261 ~~~-p----------~n~------ka~~~~g~a~~~l~~~--~~A~~~l~~al~l~P~n~~ 302 (365)
+.+ | .+. +|.+..+.-..+.+++ .+-+..|..+.++.|....
T Consensus 1730 ~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1730 SKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred HhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC
Confidence 543 2 222 2344444444444553 4567788888888885433
No 493
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.72 E-value=2.6e+02 Score=19.09 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHh
Q 017811 236 HLNMAACLLKLKRYEEAIGQCSLVLG 261 (365)
Q Consensus 236 ~~nla~~~~kl~~~~~A~~~~~~aL~ 261 (365)
++..-.-++.+|++++|.++......
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666778889999999998887653
No 494
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.51 E-value=5.2e+02 Score=22.54 Aligned_cols=99 Identities=15% Similarity=0.035 Sum_probs=62.1
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHhhchhhhHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 017811 184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 263 (365)
Q Consensus 184 ~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~aL~~~ 263 (365)
.+...+.....+|++++|...+.+|.+....-.. .+.. -.-+++-|.|-..+.+|-+|...+.-.-.-.
T Consensus 31 r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~---------~l~~--~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~ 99 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKR---------LLAG--FPELYFAGFVTTALQEYVEATLLYSILKDGR 99 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---------HHhh--hHHHHHHHhhcchHHHHHHHHHHHHHHhcCC
Confidence 3445566677889999999999999876643110 0000 1125666788888999999999887765543
Q ss_pred CCCHH------HHH------------HHHHHHHHcCCHHHHHHHHHHH
Q 017811 264 ENNVK------ALF------------RRGKARAELGQTDAAREDFLKA 293 (365)
Q Consensus 264 p~n~k------a~~------------~~g~a~~~l~~~~~A~~~l~~a 293 (365)
-.+++ ..| |.....+..|+++.|...++-.
T Consensus 100 ~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 100 LPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFM 147 (204)
T ss_pred CCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 22222 223 3334556678888887665533
No 495
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=22.29 E-value=2.1e+02 Score=29.83 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 017811 242 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 310 (365)
Q Consensus 242 ~~~kl~~~~~A~~~~~~aL~~~p~n~ka~~~~g~a~~~l~~~~~A~~~l~~al~l~P~n~~~~~~l~~l 310 (365)
.+...++|.+|....++-=++- ...|+..|+-+....+|++|.+.|-+|= ...++...|..+
T Consensus 782 lHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG----r~~EA~~vLeQL 843 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG----RQREAVQVLEQL 843 (1081)
T ss_pred heeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc----chHHHHHHHHHh
Confidence 3344456666655444322222 3588999999999999999999998873 344555555544
No 496
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=22.17 E-value=95 Score=29.16 Aligned_cols=38 Identities=16% Similarity=0.029 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhcc
Q 017811 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 214 (365)
Q Consensus 177 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~al~~~~~ 214 (365)
-+.+.|..+...|...-+.|..-+|+..|+.|+.+.|+
T Consensus 14 ~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 14 PLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred hHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCch
Confidence 35677889999999999999999999999999999876
No 497
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=21.99 E-value=1.3e+02 Score=20.83 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=16.7
Q ss_pred hhHHHHHhcCCcCcEEEEEecc
Q 017811 110 TGLAIGVSSMKAGEHALLHVGW 131 (365)
Q Consensus 110 ~g~e~~l~~Mk~GE~~~~~i~~ 131 (365)
+-+..|+..|+.||++.|+.-+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 4578899999999999998754
No 498
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=21.92 E-value=6.6e+02 Score=23.52 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
|+|+.|..+...+++-+|+..|+.|...
T Consensus 253 a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 253 AYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 7777888888888888888888877753
No 499
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.68 E-value=7.2e+02 Score=23.86 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 017811 269 ALFRRGKARAELGQTDAAREDFLKAGKF 296 (365)
Q Consensus 269 a~~~~g~a~~~l~~~~~A~~~l~~al~l 296 (365)
..+.+|.-|+..++++.|+-.|.+++..
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 5567788889999999999999988764
No 500
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.54 E-value=1.8e+02 Score=21.69 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=26.1
Q ss_pred HhcccCCCCCccccchhHHHHHHHHHHHHHHHHhhhc
Q 017811 325 YKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKR 361 (365)
Q Consensus 325 y~kmf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (365)
++.+-..-......++|..+.+...+|.+..++-++|
T Consensus 58 ~~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 58 AREAAEQTEDYVRENPWQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCC
Confidence 3333333333345588999999999999999888776
Done!