BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017814
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 156 EAFSEMDEIIFDTLDKLFARTDISPSEIDVLV-VNVSLFSPAPSLTSRIINRYNLRNDIK 214
EA S + +I LD ++ ++IDV++ V+ + F PSLT+ +IN + +
Sbjct: 83 EAKSRVPAVIQRALDD----AELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTR 137
Query: 215 AFNLSGMGCSASVVAVDLVQQLFRTYKNKLAIVVSTE 251
++ +GC+A A++ Y A++V+ E
Sbjct: 138 QIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACE 174
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 155 AEAFSEMD----EIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPA---PSLTSRIINRY 207
A F+E D ++ F + DI P ID+++V S +P PS + N+
Sbjct: 55 ARYFAEPDVTTSDLAFIASQRAIEAADIDPQSIDLIIVATS--TPDFVFPSTACLLQNKL 112
Query: 208 NLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTYKNKLAIVVSTES 252
+RN AF++ + S AV R+ +++ A+V+ E+
Sbjct: 113 GIRNHGAAFDVQAV-XSGFAYAVATADSFIRSGQHRTALVIGAET 156
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
+EI +LV+ S AP + I+ L I ++ MGC+A++ A+ R +
Sbjct: 133 AEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAH 192
Query: 241 KNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVR 300
A+VV E N + + ++ + LF GC+ L+ ++ K + +VR
Sbjct: 193 PAMKALVVCIELFSVNAVFADDINDVVIHSLF-GDGCAALVIGASQVQEK-LEPGKVVVR 250
Query: 301 THF 303
+ F
Sbjct: 251 SSF 253
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
++I LVV + + P + R++ LR ++ L GC A A+ L + L
Sbjct: 116 ADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENS 175
Query: 241 KNKLAIVVSTES-----MGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKL 295
+ +VV+ E GP+ C R +L LF G ++++ + + + ++
Sbjct: 176 RGARVLVVAAELTLMYFTGPDEGCFR---TLLVQGLFGDGAAAVIVGADADDVERPLFEI 232
Query: 296 NCLVRTHFGSNDEA 309
+T +D A
Sbjct: 233 VSAAQTIIPESDHA 246
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
++I LVV + + P + R++ LR ++ L GC A A+ L + L
Sbjct: 146 ADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENS 205
Query: 241 KNKLAIVVSTES-----MGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKL 295
+ +VV+ E GP+ C R +L LF G ++++ + + + ++
Sbjct: 206 RGARVLVVAAELTLMYFTGPDEGCFR---TLLVQGLFGDGAAAVIVGADADDVERPLFEI 262
Query: 296 NCLVRTHFGSNDEA 309
+T +D A
Sbjct: 263 VSAAQTIIPESDHA 276
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 181 SEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTY 240
+EI +LV+ S AP + I+ L I ++ MGC+A++ A+ R +
Sbjct: 133 AEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAH 192
Query: 241 KNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVR 300
A+VV E N + + ++ + LF GC+ L+ ++ K + +VR
Sbjct: 193 PAMKALVVCIELCSVNAVFADDINDVVIHSLF-GDGCAALVIGASQVQEK-LEPGKVVVR 250
Query: 301 THF 303
+ F
Sbjct: 251 SSF 253
>pdb|4H7N|A Chain A, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|B Chain B, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|C Chain C, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis.
pdb|4H7N|D Chain D, The Structure Of Putative Aldehyde Dehydrogenase Puta From
Anabaena Variabilis
Length = 474
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 136 EETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSP 195
EET+GP V P + EA ++ I+ +FA SE + L V L +
Sbjct: 363 EETFGPIXPVX---PFPDVEEAVYLANDTIYGLSAAVFAG-----SEDEALKVARQLNAG 414
Query: 196 APSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTYKNKLAIVVSTESMGP 255
A S+ + + AFN SG+G S V A L + + K A ++ T S
Sbjct: 415 AISINDAALTAXXHEGEKNAFNFSGLGGS-RVGAAGL-----KRFLRKQAFLIKTNSTSD 468
Query: 256 NWY 258
W+
Sbjct: 469 PWW 471
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 176 TDISPSEIDVLVVNVSLFSPA---PSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDL 232
++SP E+D++++ + +P PS T+ ++ + AF++S CS + A+D+
Sbjct: 65 ANLSPEELDLIIL--ATLTPQKRFPS-TACLVQAQLKAKGVYAFDISA-ACSGFIYALDI 120
Query: 233 VQQLFRTYKNKLAIVVSTE--SMGPNWYCGREKSMMLSNILFRSGGCSMLLTNN 284
++ K K +V+ E S +W ++S + +LF G ++++T +
Sbjct: 121 ADSFIKSGKAKNVLVIGAEKLSEAVDW---EDRS---TCVLFGDGAGAVVVTRS 168
>pdb|1FEP|A Chain A, Ferric Enterobactin Receptor
Length = 724
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 30/99 (30%)
Query: 76 WVLQKRGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLE-----------EYRF 124
++L +GQ CY A CY ++ + +T NK++GLE +R
Sbjct: 478 YILYSKGQGCYASAGGCYLQGNDDLKAETSI-------NKEIGLEFKRDGWLAGVTWFRN 530
Query: 125 LLKNMVSSG---IGEETYG---------PRNVVEGREES 151
+N + +G +G+ G P+ VVEG E S
Sbjct: 531 DYRNKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGS 569
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,404,038
Number of Sequences: 62578
Number of extensions: 333327
Number of successful extensions: 875
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 10
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)