BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017815
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OKF|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
pdb|3OKF|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
Length = 390
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/294 (54%), Positives = 195/294 (66%), Gaps = 4/294 (1%)
Query: 35 KKVLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIES 93
+KV++VTN+TVAPLY + L G + +E LPDGE YK ++T V +E
Sbjct: 63 QKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLE---LPDGEQYKTLETFNTVMSFLLEH 119
Query: 94 RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGK 153
R +ALGGGVIGD+ G+AAA Y RGV FIQIPTT+++QVDSSVGGKT +NH LGK
Sbjct: 120 NYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGK 179
Query: 154 NLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD 213
N+IGAFYQP+ V++DTD L TLP RE A+G+AEVIKYG+I D+ FF+W E M L A D
Sbjct: 180 NMIGAFYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEALYALD 239
Query: 214 PRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEXXXXX 273
+A YAI R C+ KAEVV+ DEKESG+RA LNLGHTFGHAIE GYG WLHGE
Sbjct: 240 EQALTYAIARCCQIKAEVVAQDEKESGIRALLNLGHTFGHAIEAHMGYGNWLHGEAVSAG 299
Query: 274 XXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKV 327
+ G ID S +R+ IL++A LP P+ MT F M DKKV
Sbjct: 300 TVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQHMMRDKKV 353
>pdb|3CLH|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from
Helicobacter Pylori
pdb|3CLH|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from
Helicobacter Pylori
Length = 343
Score = 200 bits (509), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 12/271 (4%)
Query: 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR 94
+K L+++++ VA L+L + + L + V ++ GE YKN +L ++ + A E +
Sbjct: 27 QKALIISDSIVAGLHLPYLLERLKA----LEVRVCVIESGEKYKNFHSLERILNNAFEMQ 82
Query: 95 LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN 154
L+R +ALGGGVI DM G+A++ Y RG+ FI IPTT++AQVD+SVGGKTGIN GKN
Sbjct: 83 LNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKN 142
Query: 155 LIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP 214
LIG+F+QP+ V +D L TL RE +G+AE+IK + D E +L +D
Sbjct: 143 LIGSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNLVE-------RLETKDL 195
Query: 215 R-AFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEXXXXX 273
+ I +S KA+VV DEKE +RA LN GHTFGHAIE Y ++LHGE
Sbjct: 196 KDCLEEVIFQSVNIKAQVVVQDEKEQNIRAGLNYGHTFGHAIEKETDYERFLHGEAIAIG 255
Query: 274 XXXXXXXSYRLGWIDDSIVKRVHNILQQAKL 304
+ LG + +R+ N+L++ L
Sbjct: 256 MRMANDLALSLGMLTLKEYERIENLLKKFDL 286
>pdb|3QBD|A Chain A, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBD|B Chain B, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBE|A Chain A, Crystal Structure Of The 3-Dehydroquinate Synthase (Arob)
From Mycobacterium Tuberculosis
Length = 368
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 145/265 (54%), Gaps = 4/265 (1%)
Query: 63 NVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 122
V + +PD E K++ + +++ + R+ V+LGGG D+ G+AAA++LR
Sbjct: 69 GVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLR 128
Query: 123 GVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELAS 182
GVS + +PTT++ VD++VGGKTGIN GKNL+GAF+QP VLVD TL TLP E+
Sbjct: 129 GVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATLQTLPRDEMIC 188
Query: 183 GLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLR 242
G+AEV+K G I D + E + + I+R+ KAEVV+ DEKES LR
Sbjct: 189 GMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAADEKESELR 248
Query: 243 ATLNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQA 302
LN GHT GHAIE Y +W HG + G +DD+ +R IL
Sbjct: 249 EILNYGHTLGHAIERRERY-RWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSL 307
Query: 303 KLPTA-PPDTMTVEMFKSIMAVDKK 326
LP + PD + IMA DKK
Sbjct: 308 GLPVSYDPDALP--QLLEIMAGDKK 330
>pdb|1DQS|A Chain A, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1DQS|B Chain B, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1NR5|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NR5|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NRX|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NRX|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NUA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NUA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NVA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVB|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVB|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVE|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|C Chain C, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|D Chain D, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVF|A Chain A, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|B Chain B, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|C Chain C, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1SG6|A Chain A, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
pdb|1SG6|B Chain B, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
Length = 393
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 157/319 (49%), Gaps = 31/319 (9%)
Query: 38 LVVTNNTVAPLYLDKVTDALTRGNPNVSVENVIL----PDGENYKNMDTLMKVFDKAIES 93
++VT+ + +Y +A + ++ +L P GE K+ T + D +
Sbjct: 40 VLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQ 99
Query: 94 R--LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL 151
R +ALGGGVIGD+ G+ A++Y+RGV ++Q+PTT++A VDSS+GGKT I+ L
Sbjct: 100 NPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPL 159
Query: 152 GKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMA 211
GKNLIGA +QP + +D + L TLP RE +G+AEVIK I E F E+N ++
Sbjct: 160 GKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILK 219
Query: 212 RDPRAFAYAIKR--------------SCENKAEVVSLDEKESGLRATLNLGHTFGHAIET 257
R R S +KA VVS DE+E GLR LN GH+ GHAIE
Sbjct: 220 AVRREVTPGEHRFEGTEEILKARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEA 279
Query: 258 GFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTM----- 312
Q LHGE + LG + V R+ L LPT+ D
Sbjct: 280 IL-TPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLT 338
Query: 313 -----TVEMFKSIMAVDKK 326
+V+ MA+DKK
Sbjct: 339 AGKHCSVDQLMFNMALDKK 357
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 129/225 (57%), Gaps = 6/225 (2%)
Query: 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92
Q + ++ + V + +K D L+ N V VI+P GE K + + + +
Sbjct: 30 QFDQSFLLIDEYVNQYFANKFDDILSYEN----VHKVIIPAGEKTKTFEQYQETLEYILS 85
Query: 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLG 152
+ R +A+GGG GD G+ AA+ LRGV FIQ+PTT++A DSSVGGK GIN + G
Sbjct: 86 HHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAH-DSSVGGKVGINSKQG 144
Query: 153 KNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH-KLMA 211
KNLIGAFY+P V+ D D L TLP +++ SG AEV K+ L+ + EQ+ + +
Sbjct: 145 KNLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQDIEQHFKDREIL 204
Query: 212 RDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIE 256
+ I + E K ++V DEKE G+R LNLGHTFGHA+E
Sbjct: 205 QSLNGMDKYIAKGIETKLDIVVADEKEQGVRKFLNLGHTFGHAVE 249
>pdb|1UJN|A Chain A, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
pdb|1UJN|B Chain B, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
Length = 348
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 71 LPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 130
LP GE K+++ KV E L R T + +GGG + D+ G+ AA+YLRGV+++ P
Sbjct: 58 LPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYLRGVAYLAFP 117
Query: 131 TTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKY 190
TT +A VD+SVGGKTGIN GKNL+GAF+ PQ V + L TLP GL E K+
Sbjct: 118 TTTLAIVDASVGGKTGINLPEGKNLVGAFHFPQGVYAELRALKTLPLPTFKEGLVEAFKH 177
Query: 191 GLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 250
GLI E + L + PR A+ + R+ K V D E G R LNLGHT
Sbjct: 178 GLIAGDEAL----LKVEDLTPQSPRLEAF-LARAVAVKVRVTEEDPLEKGKRRLLNLGHT 232
Query: 251 FGHAIET 257
GHA+E
Sbjct: 233 LGHALEA 239
>pdb|2D2X|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
pdb|2D2X|B Chain B, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
pdb|2GRU|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
Complexed With Carbaglucose-6-Phosphate, Nad+ And Co2+
pdb|2GRU|B Chain B, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
Complexed With Carbaglucose-6-Phosphate, Nad+ And Co2+
Length = 368
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 5/197 (2%)
Query: 74 GENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133
GE YK + T+ + ++AI +RR VA+GGG+ G++ G AA RG++ I +PTT
Sbjct: 71 GEEYKTLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMFRGIALIHVPTTF 130
Query: 134 MAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLI 193
+A DS + K +N GKNL+G +Y P+ V DT L+ P R++ +G+ E++K LI
Sbjct: 131 LAASDSVLSIKQAVNLTSGKNLVGFYYPPRFVFADTRILSESPPRQVKAGMCELVKNMLI 190
Query: 194 RDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLD--EKESGLRATLNLGHTF 251
+ + E+ E +++ P+ I K V+S D EK+ GL GHT
Sbjct: 191 LENDNKEFTEDDLNSANVYSPKQLETFINFCISAKMSVLSEDIYEKKKGL--IFEYGHTI 248
Query: 252 GHAIETGFGYGQWLHGE 268
GHAIE G HGE
Sbjct: 249 GHAIELA-EQGGITHGE 264
>pdb|3CE9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|C Chain C, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|D Chain D, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
Length = 354
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 32/172 (18%)
Query: 63 NVSVENVILPDGENYKNMDTLMKVFDK------AIESRLDRRCTFVALGGGVIGDMCGYA 116
N+ +E V E KN+D FD+ I + +D + +GGG D Y
Sbjct: 61 NIEIEAV-----ETVKNID-----FDEIGTNAFKIPAEVD---ALIGIGGGKAIDAVKYX 107
Query: 117 AASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLP 176
A +LR + FI +PT+ SS IN GK P ++VD D + P
Sbjct: 108 A--FLRKLPFISVPTSTSNDGFSSPVASLLIN---GKRTSVPAKTPDGIVVDIDVIKGSP 162
Query: 177 DRELASGLAEVIKYGLIRDAEFFEWQ-EQNMHKLMARDPRAFAYAIKRSCEN 227
++ + SG+ +++ ++W+ E+ HK + D FA I + N
Sbjct: 163 EKFIYSGIGDLVS----NITALYDWKFEEENHKSIIDD---FAVXISKKSVN 207
>pdb|1TA9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
pdb|1TA9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
Length = 450
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 9 KDRFFGNSDTLL----LISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNV 64
KDR F + + + + +Y + K +V+ + V + +K+ D+L++ +
Sbjct: 62 KDRIFTSPQKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNG--M 119
Query: 65 SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124
+V ++ + +D L K D + +GGG D Y A S +
Sbjct: 120 TVTKLVFGGEASLVELDKLRKQCP-------DDTQVIIGVGGGKTMDSAKYIAHSM--NL 170
Query: 125 SFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY--QPQCVLVDTDTLNTLPDRELAS 182
I PTT A D++ + I G+ +FY P + +DTD + P R L S
Sbjct: 171 PSIICPTT--ASSDAATSSLSVIYTPDGQFQKYSFYPLNPNLIFIDTDVIVRAPVRFLIS 228
Query: 183 GLAEVI 188
G+ + +
Sbjct: 229 GIGDAL 234
>pdb|1JPU|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Glycerol
Dehydrogenase
pdb|1JQA|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Glycerol
pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Nad+
Length = 370
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 24/199 (12%)
Query: 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES 93
G K +V+ + V + + + L +GN ++ E V+ + ++ + + KA
Sbjct: 31 GNKTVVIADEIVWKIAGHTIVNELKKGN--IAAEEVVFSGEASRNEVERIANIARKA--- 85
Query: 94 RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGK 153
+ +GGG D A A L I +PT A D+ + I G
Sbjct: 86 ---EAAIVIGVGGGKTLDTA-KAVADELDAYIVI-VPTA--ASTDAPTSALSVIYSDDGV 138
Query: 154 NLIGAFYQ--PQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQE--QNMHKL 209
FY+ P VLVDT + P R LASG+A+ + A + E + ++ K
Sbjct: 139 FESYRFYKKNPDLVLVDTKIIANAPPRLLASGIADAL-------ATWVEARSVIKSGGKT 191
Query: 210 MARD-PRAFAYAIKRSCEN 227
MA P A AI CE
Sbjct: 192 MAGGIPTIAAEAIAEKCEQ 210
>pdb|3RNR|A Chain A, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
pdb|3RNR|B Chain B, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
Length = 211
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 87
G+ VLVV++ L+ D++ AL+RG+ + + G Y++ TL V
Sbjct: 157 GEGVLVVSDGVYRSLHEDRIAXALSRGSDARGILQEVEAQGRPYQDNATLALVI 210
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 166 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 225
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 233
Query: 226 ENKAEVVSLDEKESGLRAT 244
E + ++ LDE ++G+ T
Sbjct: 234 EARGMLLILDEAQTGVGRT 252
>pdb|1QI9|A Chain A, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
pdb|1QI9|B Chain B, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
Length = 556
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 174 TLPDRELASGLAEVIKYGLIRDAEFFEW 201
TLP ELA+ LAEV L RD F ++
Sbjct: 128 TLPSPELAAQLAEVYWMALARDVPFMQY 155
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 166 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 225
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 233
Query: 226 ENKAEVVSLDEKESGLRAT 244
E + ++ LDE ++G+ T
Sbjct: 234 EARGMLLILDEAQTGVGRT 252
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 166 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 225
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 185 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 232
Query: 226 ENKAEVVSLDEKESGLRAT 244
E + ++ LDE ++G+ T
Sbjct: 233 EARGMLLILDEAQTGVGRT 251
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 166 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 225
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 184 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 231
Query: 226 ENKAEVVSLDEKESGLRAT 244
E + ++ LDE ++G+ T
Sbjct: 232 EARGMLLILDEAQTGVGRT 250
>pdb|1KQ3|A Chain A, Crystal Structure Of A Glycerol Dehydrogenase (Tm0423)
From Thermotoga Maritima At 1.5 A Resolution
Length = 376
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 38/172 (22%)
Query: 162 PQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ---EQNMHKLMARDPRAFA 218
P VLVDT+ + P R L +G+ + + A +FE + ++ + R A
Sbjct: 157 PDVVLVDTEIVAKAPARFLVAGMGDAL-------ATWFEAESCKQKYAPNMTGRLGSMTA 209
Query: 219 YAI---------------KRSCENKAEVVSLDEKESGLRATLNLGHTFG-----HAIETG 258
YA+ KRS E K+ +L++ LG G HAI G
Sbjct: 210 YALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESGGLAAAHAIHNG 269
Query: 259 F----GYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPT 306
++LHGE S L +++ V++ ++ LPT
Sbjct: 270 LTVLENTHKYLHGE----KVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPT 317
>pdb|2PLC|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 274
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1 MTPKALLYKDRFFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRG 60
+ P +YKD F+ T SN + V+GK +L+ N+T PL ++ + G
Sbjct: 119 IQPLINIYKDYFYTTPRTD--TSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFG 176
Query: 61 NPNVSVEN 68
PN +++
Sbjct: 177 APNQVIQD 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,170,387
Number of Sequences: 62578
Number of extensions: 389837
Number of successful extensions: 880
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 23
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)