Query 017815
Match_columns 365
No_of_seqs 163 out of 1584
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0337 AroB 3-dehydroquinate 100.0 2.1E-77 4.5E-82 565.3 36.5 348 13-364 10-359 (360)
2 PLN02834 3-dehydroquinate synt 100.0 5.9E-68 1.3E-72 524.1 40.0 348 16-365 79-431 (433)
3 cd08197 DOIS 2-deoxy-scyllo-in 100.0 1.7E-67 3.7E-72 510.2 38.4 339 17-360 3-355 (355)
4 cd08198 DHQS-like2 Dehydroquin 100.0 1E-66 2.2E-71 503.6 37.3 326 34-361 30-368 (369)
5 cd08195 DHQS Dehydroquinate sy 100.0 1.2E-66 2.5E-71 505.0 37.0 339 17-359 3-345 (345)
6 PRK00002 aroB 3-dehydroquinate 100.0 3.7E-66 8.1E-71 503.6 38.8 345 14-363 8-356 (358)
7 cd08196 DHQS-like1 Dehydroquin 100.0 1.3E-65 2.7E-70 494.8 37.4 338 17-364 3-343 (346)
8 cd08169 DHQ-like Dehydroquinat 100.0 4.6E-65 1E-69 492.2 38.1 335 17-358 3-343 (344)
9 TIGR01357 aroB 3-dehydroquinat 100.0 1.6E-64 3.4E-69 490.2 38.2 340 17-359 2-343 (344)
10 PRK14021 bifunctional shikimat 100.0 1.9E-64 4.1E-69 514.0 38.3 345 14-364 187-542 (542)
11 cd08199 EEVS 2-epi-5-epi-valio 100.0 8.2E-63 1.8E-67 477.7 38.1 336 17-357 3-353 (354)
12 PF01761 DHQ_synthase: 3-dehyd 100.0 3.9E-62 8.4E-67 451.2 25.4 259 69-328 1-260 (260)
13 PRK06203 aroB 3-dehydroquinate 100.0 4E-60 8.7E-65 463.2 38.3 347 13-363 11-381 (389)
14 PRK13951 bifunctional shikimat 100.0 1.7E-60 3.7E-65 477.8 31.4 298 35-352 186-484 (488)
15 PRK00843 egsA NAD(P)-dependent 100.0 3E-51 6.5E-56 397.7 27.4 319 9-360 5-345 (350)
16 cd08549 G1PDH_related Glycerol 100.0 2.3E-48 4.9E-53 375.0 27.9 297 15-335 1-323 (332)
17 COG1454 EutG Alcohol dehydroge 100.0 1.6E-45 3.5E-50 354.5 24.3 324 10-361 2-375 (377)
18 cd08173 Gro1PDH Sn-glycerol-1- 100.0 4E-44 8.6E-49 346.7 27.5 313 15-360 2-336 (339)
19 cd07766 DHQ_Fe-ADH Dehydroquin 100.0 1.2E-43 2.7E-48 342.6 29.9 286 15-319 1-305 (332)
20 cd08174 G1PDH-like Glycerol-1- 100.0 8.5E-44 1.8E-48 343.4 24.6 306 15-359 1-330 (331)
21 cd08175 G1PDH Glycerol-1-phosp 100.0 1.7E-43 3.7E-48 343.6 23.0 302 16-333 2-337 (348)
22 PRK09860 putative alcohol dehy 100.0 9.8E-43 2.1E-47 341.6 27.4 325 8-361 2-381 (383)
23 PRK15454 ethanol dehydrogenase 100.0 1.9E-42 4.2E-47 340.4 26.3 326 9-363 21-395 (395)
24 PRK10624 L-1,2-propanediol oxi 100.0 1.3E-41 2.7E-46 334.1 28.7 324 9-361 2-380 (382)
25 TIGR02638 lactal_redase lactal 100.0 5.2E-42 1.1E-46 336.5 25.2 298 9-322 1-355 (379)
26 cd08179 NADPH_BDH NADPH-depend 100.0 2.5E-41 5.4E-46 331.4 27.0 323 11-362 1-372 (375)
27 cd08176 LPO Lactadehyde:propan 100.0 2.2E-41 4.8E-46 331.9 26.6 296 10-321 1-351 (377)
28 cd08178 AAD_C C-terminal alcoh 100.0 2.4E-41 5.3E-46 333.8 27.0 288 15-317 1-364 (398)
29 cd08193 HVD 5-hydroxyvalerate 100.0 2E-41 4.4E-46 332.2 25.5 293 12-321 1-349 (376)
30 cd08185 Fe-ADH1 Iron-containin 100.0 5.4E-41 1.2E-45 329.6 27.8 299 12-324 1-355 (380)
31 TIGR03405 Phn_Fe-ADH phosphona 100.0 2.1E-41 4.6E-46 329.3 24.6 293 12-320 1-339 (355)
32 cd08180 PDD 1,3-propanediol de 100.0 2.3E-41 5E-46 326.5 23.8 279 12-317 1-298 (332)
33 cd08182 HEPD Hydroxyethylphosp 100.0 7.1E-41 1.5E-45 327.4 25.9 290 15-322 1-342 (367)
34 cd08189 Fe-ADH5 Iron-containin 100.0 1.2E-40 2.6E-45 326.4 26.8 292 13-321 2-348 (374)
35 cd08187 BDH Butanol dehydrogen 100.0 1.3E-40 2.8E-45 327.0 26.7 296 10-322 2-357 (382)
36 PRK09423 gldA glycerol dehydro 100.0 2.5E-40 5.4E-45 323.2 27.4 289 9-318 2-323 (366)
37 cd08177 MAR Maleylacetate redu 100.0 2.1E-40 4.5E-45 320.4 25.7 289 15-324 1-316 (337)
38 cd08192 Fe-ADH7 Iron-containin 100.0 6.5E-40 1.4E-44 320.9 27.2 293 14-322 1-345 (370)
39 COG1979 Uncharacterized oxidor 100.0 4.3E-40 9.2E-45 302.4 22.9 320 7-361 1-382 (384)
40 cd08188 Fe-ADH4 Iron-containin 100.0 9.4E-40 2E-44 320.3 26.5 292 13-320 4-350 (377)
41 cd08191 HHD 6-hydroxyhexanoate 100.0 1.3E-39 2.8E-44 320.3 26.5 290 15-321 1-360 (386)
42 cd08186 Fe-ADH8 Iron-containin 100.0 2.8E-39 6E-44 317.6 28.3 319 16-361 2-381 (383)
43 cd08190 HOT Hydroxyacid-oxoaci 100.0 2.5E-39 5.5E-44 320.5 27.1 321 16-361 2-412 (414)
44 cd08172 GlyDH-like1 Glycerol d 100.0 2.6E-39 5.7E-44 314.0 26.5 312 14-361 1-346 (347)
45 cd08550 GlyDH-like Glycerol_de 100.0 3.8E-39 8.2E-44 313.1 27.1 314 15-361 1-348 (349)
46 cd08181 PPD-like 1,3-propanedi 100.0 3.1E-39 6.7E-44 314.4 26.1 291 12-321 1-331 (357)
47 cd08170 GlyDH Glycerol dehydro 100.0 4.4E-39 9.4E-44 313.1 26.2 315 15-362 1-348 (351)
48 cd08551 Fe-ADH iron-containing 100.0 4.4E-39 9.6E-44 315.2 26.2 293 15-323 1-347 (370)
49 cd08194 Fe-ADH6 Iron-containin 100.0 4.9E-39 1.1E-43 315.1 25.9 284 15-316 1-340 (375)
50 cd08183 Fe-ADH2 Iron-containin 100.0 4.8E-39 1E-43 315.1 25.6 285 15-320 1-347 (374)
51 PRK15138 aldehyde reductase; P 100.0 7.1E-39 1.5E-43 314.5 26.5 325 8-361 2-385 (387)
52 COG0371 GldA Glycerol dehydrog 100.0 3.1E-38 6.7E-43 300.8 24.8 319 13-361 6-353 (360)
53 cd08184 Fe-ADH3 Iron-containin 100.0 4.6E-37 1E-41 296.9 25.7 279 16-322 2-317 (347)
54 PF00465 Fe-ADH: Iron-containi 100.0 9.4E-38 2E-42 305.4 21.2 293 15-322 1-346 (366)
55 PRK13805 bifunctional acetalde 100.0 1.1E-36 2.4E-41 326.2 29.2 292 11-317 456-825 (862)
56 cd08171 GlyDH-like2 Glycerol d 100.0 4.6E-36 9.9E-41 291.0 26.6 311 17-361 3-344 (345)
57 PRK10586 putative oxidoreducta 100.0 1.3E-35 2.8E-40 288.5 26.9 314 12-362 9-357 (362)
58 KOG3857 Alcohol dehydrogenase, 100.0 4.1E-34 8.8E-39 263.8 21.3 332 5-361 38-460 (465)
59 PF13685 Fe-ADH_2: Iron-contai 100.0 2.1E-33 4.6E-38 258.2 16.4 227 24-271 10-250 (250)
60 PF00731 AIRC: AIR carboxylase 96.7 0.013 2.8E-07 49.9 9.4 86 36-132 2-87 (150)
61 KOG0692 Pentafunctional AROM p 96.7 0.0025 5.4E-08 63.1 5.4 80 265-345 1-90 (595)
62 TIGR01162 purE phosphoribosyla 96.3 0.046 1E-06 46.7 10.1 84 38-132 2-85 (156)
63 COG0041 PurE Phosphoribosylcar 95.2 0.23 5E-06 42.1 9.7 86 36-132 4-89 (162)
64 PRK11914 diacylglycerol kinase 93.6 0.93 2E-05 43.2 11.6 85 34-132 8-97 (306)
65 PRK13337 putative lipid kinase 93.2 0.8 1.7E-05 43.6 10.4 86 35-132 2-92 (304)
66 PRK13054 lipid kinase; Reviewe 92.9 1 2.2E-05 42.8 10.5 87 35-132 4-93 (300)
67 TIGR00147 lipid kinase, YegS/R 92.5 1.2 2.5E-05 42.2 10.4 85 35-132 2-92 (293)
68 TIGR00237 xseA exodeoxyribonuc 91.6 1.2 2.5E-05 44.9 9.5 89 34-127 129-223 (432)
69 PLN02948 phosphoribosylaminoim 91.4 2 4.4E-05 44.8 11.4 87 35-132 411-497 (577)
70 PRK00286 xseA exodeoxyribonucl 90.5 2.1 4.6E-05 43.1 10.3 88 34-127 135-228 (438)
71 PLN02958 diacylglycerol kinase 90.1 2.9 6.2E-05 42.7 11.0 95 27-132 104-208 (481)
72 PF02601 Exonuc_VII_L: Exonucl 89.8 1.9 4.2E-05 41.3 9.0 78 34-115 14-94 (319)
73 COG1597 LCB5 Sphingosine kinas 89.8 3 6.5E-05 39.8 10.2 85 35-132 3-92 (301)
74 PRK03202 6-phosphofructokinase 89.5 0.73 1.6E-05 44.4 5.8 50 78-133 77-126 (320)
75 PF00781 DAGK_cat: Diacylglyce 89.0 4.7 0.0001 33.1 9.6 84 36-132 1-91 (130)
76 PRK13055 putative lipid kinase 88.7 5.1 0.00011 38.8 11.1 87 35-132 3-94 (334)
77 COG3340 PepE Peptidase E [Amin 88.5 5.9 0.00013 35.7 10.3 81 34-129 32-124 (224)
78 PF06506 PrpR_N: Propionate ca 88.4 3.3 7.1E-05 36.1 8.7 76 34-132 77-152 (176)
79 TIGR02482 PFKA_ATP 6-phosphofr 88.3 1 2.2E-05 43.0 5.8 51 78-133 75-125 (301)
80 cd00763 Bacterial_PFK Phosphof 88.2 1 2.2E-05 43.4 5.7 51 77-133 75-125 (317)
81 COG1570 XseA Exonuclease VII, 87.2 5 0.00011 40.1 10.0 89 34-127 135-229 (440)
82 PF00365 PFK: Phosphofructokin 86.2 1.9 4.1E-05 40.8 6.3 51 78-133 76-126 (282)
83 TIGR02483 PFK_mixed phosphofru 86.1 1.3 2.8E-05 42.7 5.2 62 80-147 80-144 (324)
84 cd00363 PFK Phosphofructokinas 85.5 3.1 6.7E-05 40.4 7.6 66 79-147 77-148 (338)
85 PRK14072 6-phosphofructokinase 85.4 1.7 3.7E-05 43.5 5.8 61 79-142 88-154 (416)
86 PRK14071 6-phosphofructokinase 84.7 1.7 3.8E-05 42.5 5.4 63 80-147 93-158 (360)
87 PF01513 NAD_kinase: ATP-NAD k 84.6 0.35 7.7E-06 45.7 0.6 38 89-132 71-109 (285)
88 PRK00861 putative lipid kinase 84.4 6.6 0.00014 37.2 9.2 83 35-132 3-90 (300)
89 TIGR03702 lip_kinase_YegS lipi 84.3 7.9 0.00017 36.6 9.7 85 37-132 2-89 (293)
90 PRK13059 putative lipid kinase 84.2 13 0.00028 35.3 11.0 85 35-132 2-91 (295)
91 PRK06555 pyrophosphate--fructo 83.8 2 4.4E-05 42.6 5.5 66 80-148 98-169 (403)
92 PRK09590 celB cellobiose phosp 83.8 17 0.00036 29.0 9.8 82 35-132 2-84 (104)
93 PRK13057 putative lipid kinase 83.7 9.4 0.0002 35.9 9.9 69 49-132 14-83 (287)
94 COG0205 PfkA 6-phosphofructoki 82.2 4.7 0.0001 39.3 7.1 67 74-145 74-143 (347)
95 PRK01231 ppnK inorganic polyph 82.0 6.9 0.00015 37.3 8.2 85 35-132 5-95 (295)
96 COG3199 Predicted inorganic po 81.7 13 0.00028 36.0 9.7 49 78-133 84-133 (355)
97 PRK02155 ppnK NAD(+)/NADH kina 81.6 5.5 0.00012 37.8 7.4 87 35-132 6-96 (291)
98 COG2515 Acd 1-aminocyclopropan 80.5 15 0.00033 35.0 9.6 100 25-132 107-216 (323)
99 cd06346 PBP1_ABC_ligand_bindin 79.8 11 0.00024 35.5 8.9 87 25-124 129-217 (312)
100 PRK12361 hypothetical protein; 79.8 11 0.00025 39.0 9.6 84 34-132 242-330 (547)
101 cd08178 AAD_C C-terminal alcoh 79.6 13 0.00028 36.9 9.5 79 246-328 257-348 (398)
102 cd06334 PBP1_ABC_ligand_bindin 79.5 11 0.00024 36.5 8.9 90 25-125 127-221 (351)
103 cd06350 PBP1_GPCR_family_C_lik 79.0 23 0.0005 33.6 11.0 93 21-124 148-242 (348)
104 cd06362 PBP1_mGluR Ligand bind 78.9 21 0.00046 35.6 11.0 107 15-132 154-265 (452)
105 TIGR02329 propionate_PrpR prop 78.6 16 0.00035 37.7 10.1 73 34-129 97-169 (526)
106 PLN02251 pyrophosphate-depende 77.8 6.5 0.00014 40.8 6.9 53 78-133 174-229 (568)
107 TIGR03590 PseG pseudaminic aci 77.8 15 0.00032 34.5 8.9 83 35-132 171-269 (279)
108 TIGR02477 PFKA_PPi diphosphate 77.5 6.6 0.00014 40.6 6.9 53 78-133 145-200 (539)
109 PRK03372 ppnK inorganic polyph 77.3 12 0.00025 35.9 8.1 89 34-132 5-105 (306)
110 cd06342 PBP1_ABC_LIVBP_like Ty 77.3 17 0.00037 34.2 9.4 93 26-129 127-220 (334)
111 cd00765 Pyrophosphate_PFK Phos 77.1 6.8 0.00015 40.6 6.8 53 78-133 150-205 (550)
112 cd06268 PBP1_ABC_transporter_L 77.0 24 0.00051 32.0 10.0 96 25-132 126-225 (298)
113 TIGR00853 pts-lac PTS system, 76.8 33 0.00072 26.7 10.0 81 34-132 3-84 (95)
114 PF13458 Peripla_BP_6: Peripla 76.3 61 0.0013 30.5 13.0 88 25-124 126-215 (343)
115 PLN03028 pyrophosphate--fructo 75.9 7.7 0.00017 40.7 6.9 55 77-134 156-213 (610)
116 PRK14077 pnk inorganic polypho 75.9 12 0.00027 35.4 7.8 86 34-132 10-97 (287)
117 PRK07085 diphosphate--fructose 75.8 7.6 0.00017 40.3 6.8 54 78-134 148-204 (555)
118 PRK03708 ppnK inorganic polyph 75.8 11 0.00025 35.4 7.5 85 36-132 2-89 (277)
119 PLN02884 6-phosphofructokinase 75.5 4.7 0.0001 40.2 5.0 49 82-133 131-182 (411)
120 PRK06455 riboflavin synthase; 75.4 37 0.0008 29.1 9.7 80 36-123 3-82 (155)
121 PRK04539 ppnK inorganic polyph 74.6 17 0.00036 34.7 8.3 84 35-132 6-101 (296)
122 COG2359 SpoVS Stage V sporulat 73.8 12 0.00027 27.7 5.5 49 81-132 14-66 (87)
123 cd06366 PBP1_GABAb_receptor Li 73.3 34 0.00073 32.6 10.4 97 25-132 127-228 (350)
124 cd06355 PBP1_FmdD_like Peripla 72.8 47 0.001 31.8 11.3 88 26-124 125-213 (348)
125 cd00764 Eukaryotic_PFK Phospho 72.4 7.5 0.00016 41.9 5.9 66 80-148 464-536 (762)
126 PRK15424 propionate catabolism 71.8 22 0.00048 36.9 9.0 66 34-116 107-172 (538)
127 PTZ00286 6-phospho-1-fructokin 71.5 8 0.00017 39.2 5.6 60 81-143 163-228 (459)
128 cd06335 PBP1_ABC_ligand_bindin 71.1 27 0.00058 33.5 9.1 88 25-124 129-218 (347)
129 PRK03378 ppnK inorganic polyph 71.1 18 0.00039 34.4 7.7 85 35-132 6-96 (292)
130 PF02006 DUF137: Protein of un 70.9 16 0.00034 31.7 6.4 65 34-108 4-68 (178)
131 cd05565 PTS_IIB_lactose PTS_II 70.8 50 0.0011 26.0 9.8 79 36-132 2-81 (99)
132 PTZ00287 6-phosphofructokinase 70.5 13 0.00029 42.4 7.4 54 77-133 911-967 (1419)
133 TIGR02478 6PF1K_euk 6-phosphof 69.2 13 0.00029 40.0 7.0 51 80-133 464-518 (745)
134 PF09002 DUF1887: Domain of un 69.1 37 0.0008 33.5 9.7 94 33-132 26-119 (381)
135 cd06379 PBP1_iGluR_NMDA_NR1 N- 69.1 50 0.0011 32.0 10.7 99 21-132 142-249 (377)
136 cd06347 PBP1_ABC_ligand_bindin 69.0 43 0.00094 31.4 10.0 90 25-126 126-218 (334)
137 PRK00561 ppnK inorganic polyph 68.9 12 0.00026 34.9 5.8 31 99-132 35-66 (259)
138 COG1440 CelA Phosphotransferas 68.8 41 0.00088 26.7 7.8 80 35-132 2-82 (102)
139 COG0683 LivK ABC-type branched 68.8 31 0.00068 33.5 9.1 90 25-126 139-230 (366)
140 PRK06830 diphosphate--fructose 68.7 9.1 0.0002 38.6 5.3 50 81-133 159-211 (443)
141 TIGR01884 cas_HTH CRISPR locus 68.5 59 0.0013 28.9 10.1 83 34-123 26-114 (203)
142 COG0541 Ffh Signal recognition 68.0 19 0.00042 36.0 7.2 68 24-102 120-187 (451)
143 cd06329 PBP1_SBP_like_3 Peripl 67.7 34 0.00074 32.6 9.1 90 25-125 134-227 (342)
144 PRK04155 chaperone protein Hch 67.7 58 0.0012 30.9 10.3 37 97-133 147-190 (287)
145 PF02502 LacAB_rpiB: Ribose/Ga 67.6 15 0.00032 31.0 5.6 89 36-133 1-89 (140)
146 PF00885 DMRL_synthase: 6,7-di 67.5 28 0.00061 29.4 7.3 84 34-129 3-105 (144)
147 PRK01911 ppnK inorganic polyph 66.7 25 0.00054 33.4 7.6 84 36-132 2-97 (292)
148 PTZ00468 phosphofructokinase f 66.4 30 0.00066 39.3 9.1 50 82-134 788-845 (1328)
149 cd06352 PBP1_NPR_GC_like Ligan 66.2 51 0.0011 31.9 10.1 89 24-124 128-219 (389)
150 cd06368 PBP1_iGluR_non_NMDA_li 65.9 37 0.0008 31.9 8.8 97 15-124 109-205 (324)
151 PRK02649 ppnK inorganic polyph 65.7 31 0.00066 33.1 8.1 85 35-132 2-101 (305)
152 cd06374 PBP1_mGluR_groupI Liga 65.6 57 0.0012 32.9 10.5 99 25-132 178-280 (472)
153 COG1691 NCAIR mutase (PurE)-re 65.0 1E+02 0.0022 28.2 10.6 95 36-144 119-214 (254)
154 PRK15404 leucine ABC transport 64.5 79 0.0017 30.7 11.0 81 33-125 160-242 (369)
155 PLN02204 diacylglycerol kinase 64.4 27 0.00058 36.6 7.8 72 34-116 159-238 (601)
156 PRK11780 isoprenoid biosynthes 64.3 75 0.0016 28.7 10.0 42 92-133 80-138 (217)
157 PRK02645 ppnK inorganic polyph 64.2 46 0.001 31.8 9.0 83 35-131 4-89 (305)
158 PLN02564 6-phosphofructokinase 63.9 13 0.00029 37.8 5.4 50 81-133 163-215 (484)
159 cd06338 PBP1_ABC_ligand_bindin 62.0 53 0.0011 31.1 9.2 89 24-124 130-221 (345)
160 cd06343 PBP1_ABC_ligand_bindin 61.9 65 0.0014 30.8 9.8 79 34-124 144-224 (362)
161 PRK03910 D-cysteine desulfhydr 61.9 1.2E+02 0.0026 29.1 11.6 50 82-132 169-219 (331)
162 PF09670 Cas_Cas02710: CRISPR- 61.6 61 0.0013 32.0 9.6 99 27-132 6-105 (379)
163 cd06328 PBP1_SBP_like_2 Peripl 61.2 75 0.0016 30.2 10.1 80 34-123 136-216 (333)
164 TIGR01120 rpiB ribose 5-phosph 61.2 34 0.00073 29.0 6.6 88 36-132 1-88 (143)
165 cd06363 PBP1_Taste_receptor Li 61.0 78 0.0017 31.1 10.4 91 24-124 167-259 (410)
166 PF04392 ABC_sub_bind: ABC tra 60.7 23 0.0005 33.3 6.3 75 46-131 13-89 (294)
167 TIGR02478 6PF1K_euk 6-phosphof 60.7 18 0.00038 39.1 6.0 67 78-147 78-167 (745)
168 cd05564 PTS_IIB_chitobiose_lic 60.5 78 0.0017 24.5 9.5 79 36-132 1-80 (96)
169 cd06358 PBP1_NHase Type I peri 59.5 1.2E+02 0.0026 28.7 11.1 79 34-124 132-212 (333)
170 cd06365 PBP1_Pheromone_recepto 59.4 72 0.0016 32.3 10.0 86 15-107 154-241 (469)
171 TIGR03407 urea_ABC_UrtA urea A 59.2 73 0.0016 30.7 9.7 88 26-124 126-214 (359)
172 PLN02935 Bifunctional NADH kin 59.0 64 0.0014 33.1 9.2 89 33-132 193-295 (508)
173 PRK05571 ribose-5-phosphate is 58.8 40 0.00087 28.7 6.7 85 36-129 2-87 (148)
174 cd06371 PBP1_sensory_GC_DEF_li 58.7 1.3E+02 0.0028 29.4 11.4 96 26-132 125-229 (382)
175 PRK09860 putative alcohol dehy 58.7 1.1E+02 0.0023 30.2 10.8 124 175-306 175-311 (383)
176 cd06349 PBP1_ABC_ligand_bindin 58.6 1.1E+02 0.0024 28.9 10.7 79 34-124 135-215 (340)
177 cd06364 PBP1_CaSR Ligand-bindi 57.9 75 0.0016 32.6 9.9 99 15-124 169-269 (510)
178 COG2984 ABC-type uncharacteriz 57.7 83 0.0018 30.3 9.2 71 46-129 44-115 (322)
179 PRK12390 1-aminocyclopropane-1 57.6 1.7E+02 0.0036 28.2 11.8 31 80-110 173-203 (337)
180 PTZ00468 phosphofructokinase f 57.4 26 0.00057 39.8 6.6 54 78-134 180-236 (1328)
181 COG0521 MoaB Molybdopterin bio 57.1 50 0.0011 28.7 7.1 90 36-135 11-119 (169)
182 cd06327 PBP1_SBP_like_1 Peripl 57.0 58 0.0012 30.8 8.4 88 25-124 127-215 (334)
183 PRK04885 ppnK inorganic polyph 57.0 32 0.0007 32.2 6.4 33 99-132 37-70 (265)
184 cd00758 MoCF_BD MoCF_BD: molyb 56.8 61 0.0013 26.6 7.5 59 47-116 18-79 (133)
185 cd03132 GATase1_catalase Type 56.8 28 0.0006 28.7 5.5 96 35-133 2-105 (142)
186 PRK13609 diacylglycerol glucos 56.4 85 0.0018 30.3 9.7 44 83-132 93-136 (380)
187 cd06360 PBP1_alkylbenzenes_lik 56.4 81 0.0018 29.6 9.3 87 25-124 126-214 (336)
188 cd06356 PBP1_Amide_Urea_BP_lik 56.2 96 0.0021 29.4 9.9 88 25-124 124-212 (334)
189 PTZ00287 6-phosphofructokinase 55.8 31 0.00068 39.5 7.0 54 78-134 255-311 (1419)
190 cd06330 PBP1_Arsenic_SBP_like 55.7 49 0.0011 31.4 7.7 91 25-124 128-220 (346)
191 PF06792 UPF0261: Uncharacteri 55.7 1.5E+02 0.0033 29.5 11.0 35 99-133 95-129 (403)
192 cd04509 PBP1_ABC_transporter_G 55.7 1.1E+02 0.0023 27.6 9.8 88 24-124 127-216 (299)
193 cd00764 Eukaryotic_PFK Phospho 55.6 25 0.00055 38.0 6.0 68 78-148 81-171 (762)
194 TIGR00114 lumazine-synth 6,7-d 55.6 82 0.0018 26.4 8.0 65 36-110 2-76 (138)
195 PLN02404 6,7-dimethyl-8-ribity 55.5 87 0.0019 26.4 8.1 62 34-105 7-74 (141)
196 cd06375 PBP1_mGluR_groupII Lig 55.5 99 0.0021 31.2 10.2 99 20-129 161-262 (458)
197 PRK13761 hypothetical protein; 55.3 37 0.00079 31.0 6.1 64 33-106 66-129 (248)
198 PLN02929 NADH kinase 55.3 52 0.0011 31.4 7.6 65 45-132 31-96 (301)
199 TIGR02667 moaB_proteo molybden 55.2 59 0.0013 27.9 7.3 52 49-110 23-76 (163)
200 PRK14076 pnk inorganic polypho 55.1 34 0.00074 35.8 6.9 87 34-132 290-381 (569)
201 PF04232 SpoVS: Stage V sporul 55.0 26 0.00056 26.9 4.4 49 81-132 14-66 (86)
202 PRK08622 galactose-6-phosphate 55.0 48 0.001 28.9 6.6 85 36-129 2-86 (171)
203 TIGR01119 lacB galactose-6-pho 54.3 55 0.0012 28.6 6.9 88 36-132 2-89 (171)
204 PTZ00215 ribose 5-phosphate is 54.2 56 0.0012 27.9 6.8 89 35-132 3-93 (151)
205 KOG4132 Uroporphyrinogen III s 53.8 88 0.0019 28.6 8.2 88 37-134 136-226 (260)
206 PRK02399 hypothetical protein; 53.3 44 0.00096 33.2 6.9 35 99-133 97-131 (406)
207 PRK11574 oxidative-stress-resi 53.2 37 0.0008 29.7 5.9 98 34-133 2-109 (196)
208 cd06341 PBP1_ABC_ligand_bindin 53.1 76 0.0016 30.0 8.6 82 25-116 124-208 (341)
209 cd06345 PBP1_ABC_ligand_bindin 52.8 1.2E+02 0.0026 28.8 9.9 80 34-125 144-225 (344)
210 PRK12615 galactose-6-phosphate 52.4 56 0.0012 28.5 6.6 88 36-132 2-89 (171)
211 PLN02199 shikimate kinase 52.3 7.4 0.00016 37.1 1.3 54 3-57 72-126 (303)
212 cd06340 PBP1_ABC_ligand_bindin 52.2 80 0.0017 30.2 8.6 79 34-124 144-224 (347)
213 TIGR03568 NeuC_NnaA UDP-N-acet 51.1 1.4E+02 0.003 29.1 10.1 86 35-130 30-124 (365)
214 cd00950 DHDPS Dihydrodipicolin 50.7 1.5E+02 0.0032 27.7 10.0 78 49-129 22-101 (284)
215 cd00886 MogA_MoaB MogA_MoaB fa 50.4 55 0.0012 27.6 6.4 53 48-110 20-74 (152)
216 cd06300 PBP1_ABC_sugar_binding 50.4 1.9E+02 0.004 26.1 10.5 76 47-132 15-94 (272)
217 COG1454 EutG Alcohol dehydroge 50.3 2.3E+02 0.005 28.0 11.3 150 163-323 158-323 (377)
218 cd06339 PBP1_YraM_LppC_lipopro 50.0 1.5E+02 0.0033 28.2 10.2 72 26-108 117-211 (336)
219 cd01391 Periplasmic_Binding_Pr 49.9 1.1E+02 0.0023 26.7 8.6 94 15-117 106-202 (269)
220 TIGR01118 lacA galactose-6-pho 49.6 78 0.0017 26.7 6.9 83 36-129 2-84 (141)
221 cd06281 PBP1_LacI_like_5 Ligan 49.5 1.9E+02 0.0041 26.0 10.3 76 45-132 13-88 (269)
222 cd06320 PBP1_allose_binding Pe 49.4 1.7E+02 0.0036 26.5 10.0 77 46-132 14-91 (275)
223 cd08193 HVD 5-hydroxyvalerate 49.4 1.7E+02 0.0036 28.7 10.4 18 289-306 289-306 (376)
224 cd06298 PBP1_CcpA_like Ligand- 49.1 1.6E+02 0.0034 26.4 9.7 74 46-132 14-87 (268)
225 cd03169 GATase1_PfpI_1 Type 1 48.9 60 0.0013 28.0 6.5 35 99-133 78-118 (180)
226 PRK03501 ppnK inorganic polyph 48.7 78 0.0017 29.6 7.5 67 36-131 4-72 (264)
227 PF04392 ABC_sub_bind: ABC tra 48.6 49 0.0011 31.1 6.3 93 25-129 121-217 (294)
228 PRK14045 1-aminocyclopropane-1 48.0 2.6E+02 0.0056 26.8 11.3 46 85-131 173-219 (329)
229 PLN02727 NAD kinase 48.0 53 0.0012 36.2 6.9 89 33-132 677-776 (986)
230 PRK12419 riboflavin synthase s 47.6 1.4E+02 0.003 25.7 8.3 64 34-105 10-77 (158)
231 cd01536 PBP1_ABC_sugar_binding 47.4 2E+02 0.0044 25.4 10.8 77 45-132 13-89 (267)
232 PRK10017 colanic acid biosynth 47.3 79 0.0017 31.8 7.8 35 99-133 119-158 (426)
233 cd06357 PBP1_AmiC Periplasmic 47.2 2.3E+02 0.0051 27.1 11.1 89 26-124 125-214 (360)
234 cd06348 PBP1_ABC_ligand_bindin 47.1 2.2E+02 0.0047 26.9 10.7 80 34-125 136-218 (344)
235 TIGR00315 cdhB CO dehydrogenas 46.8 48 0.001 28.7 5.3 85 25-116 17-117 (162)
236 cd03786 GT1_UDP-GlcNAc_2-Epime 46.2 1.4E+02 0.003 28.4 9.2 89 35-131 29-120 (363)
237 PF13407 Peripla_BP_4: Peripla 46.2 83 0.0018 28.2 7.3 77 46-132 13-89 (257)
238 PRK03170 dihydrodipicolinate s 46.1 2E+02 0.0044 26.9 10.1 78 49-129 23-102 (292)
239 cd06271 PBP1_AglR_RafR_like Li 46.1 1.9E+02 0.0042 25.7 9.8 75 44-131 16-90 (268)
240 cd01537 PBP1_Repressors_Sugar_ 45.9 2.1E+02 0.0045 25.1 10.9 76 46-133 14-89 (264)
241 TIGR03669 urea_ABC_arch urea A 45.7 2.2E+02 0.0047 27.8 10.6 86 26-124 126-213 (374)
242 COG1731 Archaeal riboflavin sy 45.6 1.1E+02 0.0024 25.4 6.9 47 64-118 31-79 (154)
243 cd06344 PBP1_ABC_ligand_bindin 45.3 1.3E+02 0.0028 28.4 8.8 87 21-118 121-210 (332)
244 cd08188 Fe-ADH4 Iron-containin 45.2 2.2E+02 0.0047 28.0 10.5 53 249-306 256-308 (377)
245 cd06274 PBP1_FruR Ligand bindi 45.0 2.1E+02 0.0045 25.6 9.9 75 45-132 13-87 (264)
246 TIGR01382 PfpI intracellular p 44.6 82 0.0018 26.5 6.6 35 99-133 62-102 (166)
247 TIGR00689 rpiB_lacA_lacB sugar 44.4 69 0.0015 27.1 5.8 85 39-132 3-87 (144)
248 COG0777 AccD Acetyl-CoA carbox 44.1 89 0.0019 29.4 6.9 50 81-133 144-205 (294)
249 PRK10653 D-ribose transporter 44.1 2.6E+02 0.0056 25.7 11.7 87 35-132 27-116 (295)
250 TIGR01275 ACC_deam_rel pyridox 43.7 2.6E+02 0.0057 26.3 10.6 45 83-129 157-202 (311)
251 cd06273 PBP1_GntR_like_1 This 43.6 2.1E+02 0.0045 25.6 9.6 75 45-132 13-87 (268)
252 PRK11018 hypothetical protein; 43.6 69 0.0015 23.8 5.2 58 1-66 5-62 (78)
253 cd00408 DHDPS-like Dihydrodipi 43.6 2.4E+02 0.0053 26.1 10.2 78 49-129 19-98 (281)
254 TIGR00215 lpxB lipid-A-disacch 43.3 2.5E+02 0.0055 27.5 10.7 88 35-129 6-119 (385)
255 cd06292 PBP1_LacI_like_10 Liga 42.7 2.3E+02 0.005 25.4 9.8 78 45-132 13-92 (273)
256 TIGR02638 lactal_redase lactal 42.7 2.6E+02 0.0057 27.3 10.7 53 248-305 258-310 (379)
257 TIGR03884 sel_bind_Methan sele 42.3 61 0.0013 24.1 4.5 27 75-104 23-49 (74)
258 TIGR00216 ispH_lytB (E)-4-hydr 42.2 3E+02 0.0066 26.0 10.7 100 25-132 144-243 (280)
259 cd06353 PBP1_BmpA_Med_like Per 42.2 1.6E+02 0.0036 27.0 8.7 69 50-130 20-88 (258)
260 smart00852 MoCF_biosynth Proba 42.0 85 0.0018 25.7 6.1 60 46-116 16-78 (135)
261 COG0329 DapA Dihydrodipicolina 42.0 2.5E+02 0.0055 26.6 10.1 88 42-132 19-108 (299)
262 cd06389 PBP1_iGluR_AMPA_GluR2 41.9 1.1E+02 0.0024 29.7 7.9 105 21-133 106-213 (370)
263 PRK09417 mogA molybdenum cofac 41.9 1E+02 0.0023 27.3 6.9 56 47-110 22-79 (193)
264 KOG3198 Signal recognition par 41.4 69 0.0015 27.1 5.2 58 290-357 44-102 (152)
265 cd06361 PBP1_GPC6A_like Ligand 41.3 2.5E+02 0.0055 27.6 10.4 110 15-132 154-267 (403)
266 KOG3075 Ribose 5-phosphate iso 41.2 81 0.0017 29.3 6.1 35 98-133 42-80 (261)
267 cd06306 PBP1_TorT-like TorT-li 41.1 2.7E+02 0.0059 25.1 10.2 75 46-130 14-88 (268)
268 TIGR00177 molyb_syn molybdenum 40.9 1.2E+02 0.0027 25.2 7.0 57 49-116 28-87 (144)
269 PRK00025 lpxB lipid-A-disaccha 40.8 1.8E+02 0.0039 27.9 9.2 86 35-129 2-115 (380)
270 cd06269 PBP1_glutamate_recepto 40.5 2.7E+02 0.0059 24.9 10.5 96 25-132 132-230 (298)
271 COG1701 Uncharacterized protei 40.3 72 0.0016 28.8 5.5 64 33-106 68-131 (256)
272 PRK10481 hypothetical protein; 40.3 2.9E+02 0.0063 25.2 10.7 96 25-132 120-215 (224)
273 COG0703 AroK Shikimate kinase 40.3 22 0.00049 31.0 2.3 17 99-115 73-89 (172)
274 PRK12613 galactose-6-phosphate 40.1 1.2E+02 0.0027 25.5 6.7 84 36-131 2-85 (141)
275 cd06326 PBP1_STKc_like Type I 39.9 3.2E+02 0.0068 25.5 10.6 81 25-116 128-211 (336)
276 PRK04761 ppnK inorganic polyph 39.7 44 0.00096 30.9 4.4 32 98-132 26-58 (246)
277 TIGR03023 WcaJ_sugtrans Undeca 39.6 2.1E+02 0.0046 28.6 9.7 94 34-132 128-227 (451)
278 cd06277 PBP1_LacI_like_1 Ligan 39.1 2.8E+02 0.0062 24.7 10.4 74 45-132 16-89 (268)
279 TIGR00854 pts-sorbose PTS syst 39.0 1.9E+02 0.0041 24.5 7.9 75 25-116 18-92 (151)
280 PRK01045 ispH 4-hydroxy-3-meth 38.8 3E+02 0.0065 26.3 9.9 100 25-132 144-245 (298)
281 PF13433 Peripla_BP_5: Peripla 38.7 3.9E+02 0.0084 26.3 10.8 89 34-132 133-227 (363)
282 cd01574 PBP1_LacI Ligand-bindi 38.5 2.8E+02 0.0062 24.6 9.8 75 45-132 13-88 (264)
283 PRK13978 ribose-5-phosphate is 38.4 49 0.0011 30.3 4.3 36 98-133 21-58 (228)
284 PF00994 MoCF_biosynth: Probab 38.2 1.4E+02 0.0031 24.6 6.9 60 46-116 15-77 (144)
285 TIGR02991 ectoine_eutB ectoine 38.1 2.8E+02 0.006 26.5 9.8 15 96-110 167-181 (317)
286 COG4567 Response regulator con 38.0 1.4E+02 0.003 25.8 6.6 67 35-117 10-76 (182)
287 PRK10310 PTS system galactitol 37.9 80 0.0017 24.4 5.0 32 35-68 3-36 (94)
288 TIGR01662 HAD-SF-IIIA HAD-supe 37.5 2.1E+02 0.0046 22.8 10.0 98 23-129 29-130 (132)
289 PRK08621 galactose-6-phosphate 37.4 1.5E+02 0.0033 25.0 6.8 83 36-129 2-84 (142)
290 cd06284 PBP1_LacI_like_6 Ligan 37.2 3E+02 0.0064 24.4 9.6 73 45-131 13-85 (267)
291 TIGR02133 RPI_actino ribose 5- 37.1 91 0.002 26.5 5.5 87 36-131 2-89 (148)
292 PRK04147 N-acetylneuraminate l 37.0 3.3E+02 0.0071 25.6 10.0 85 45-132 21-108 (293)
293 PRK12483 threonine dehydratase 37.0 2.5E+02 0.0054 29.1 9.7 34 98-132 188-222 (521)
294 cd06370 PBP1_Speract_GC_like L 36.9 3E+02 0.0066 26.9 10.2 91 25-124 128-222 (404)
295 TIGR01138 cysM cysteine syntha 36.9 2.1E+02 0.0044 27.0 8.6 34 98-132 165-199 (290)
296 cd00952 CHBPH_aldolase Trans-o 36.8 3.7E+02 0.0081 25.5 10.4 85 45-132 26-112 (309)
297 cd01538 PBP1_ABC_xylose_bindin 36.6 3.3E+02 0.0072 24.9 9.9 76 45-131 13-88 (288)
298 cd01133 F1-ATPase_beta F1 ATP 36.6 1.5E+02 0.0033 27.9 7.4 82 16-103 51-133 (274)
299 cd06294 PBP1_ycjW_transcriptio 36.4 3.1E+02 0.0067 24.4 10.2 75 45-132 18-92 (270)
300 PRK12360 4-hydroxy-3-methylbut 36.2 3.7E+02 0.0081 25.4 10.0 98 25-132 147-244 (281)
301 cd06318 PBP1_ABC_sugar_binding 35.9 2.9E+02 0.0063 24.9 9.4 74 46-132 14-89 (282)
302 COG0698 RpiB Ribose 5-phosphat 35.8 1.8E+02 0.004 24.8 7.1 85 36-129 2-87 (151)
303 cd06380 PBP1_iGluR_AMPA N-term 35.7 3.9E+02 0.0084 25.7 10.7 99 25-132 118-219 (382)
304 COG3414 SgaB Phosphotransferas 35.5 1.2E+02 0.0027 23.5 5.6 34 35-68 2-37 (93)
305 cd06309 PBP1_YtfQ_like Peripla 35.4 2.9E+02 0.0062 24.8 9.2 76 46-132 14-89 (273)
306 TIGR01506 ribC_arch riboflavin 35.4 1.7E+02 0.0037 25.0 6.8 57 41-108 5-65 (151)
307 cd06331 PBP1_AmiC_like Type I 35.4 1.4E+02 0.0031 28.1 7.3 87 25-124 124-212 (333)
308 PRK06381 threonine synthase; V 35.3 3.9E+02 0.0086 25.3 10.6 73 26-111 103-181 (319)
309 PRK00061 ribH 6,7-dimethyl-8-r 35.1 2.9E+02 0.0062 23.6 8.5 63 34-105 12-79 (154)
310 cd00954 NAL N-Acetylneuraminic 35.0 3.8E+02 0.0083 25.0 10.1 82 45-129 18-102 (288)
311 cd06267 PBP1_LacI_sugar_bindin 34.8 1.6E+02 0.0034 26.0 7.2 87 25-117 108-197 (264)
312 cd06337 PBP1_ABC_ligand_bindin 34.8 2.8E+02 0.0061 26.5 9.4 79 34-124 145-228 (357)
313 TIGR00213 GmhB_yaeD D,D-heptos 34.7 2.9E+02 0.0063 23.5 10.3 107 15-132 22-153 (176)
314 cd01391 Periplasmic_Binding_Pr 34.6 3E+02 0.0065 23.7 10.7 72 49-132 18-91 (269)
315 PF02602 HEM4: Uroporphyrinoge 34.5 1.5E+02 0.0032 26.3 7.0 92 25-129 108-202 (231)
316 cd08177 MAR Maleylacetate redu 34.2 3.7E+02 0.008 25.8 10.1 53 248-305 226-278 (337)
317 cd06267 PBP1_LacI_sugar_bindin 34.1 3.2E+02 0.007 23.9 10.3 74 46-132 14-87 (264)
318 PRK15454 ethanol dehydrogenase 34.0 4.7E+02 0.01 25.8 10.9 123 175-305 193-328 (395)
319 cd01541 PBP1_AraR Ligand-bindi 34.0 3.5E+02 0.0075 24.2 9.6 77 46-132 14-92 (273)
320 COG0031 CysK Cysteine synthase 33.9 2.7E+02 0.0058 26.7 8.7 97 25-132 101-205 (300)
321 cd08190 HOT Hydroxyacid-oxoaci 33.9 4.7E+02 0.01 26.0 11.0 54 248-305 275-340 (414)
322 cd06278 PBP1_LacI_like_2 Ligan 33.8 3E+02 0.0066 24.3 9.0 74 45-132 13-86 (266)
323 cd07039 TPP_PYR_POX Pyrimidine 33.6 2.4E+02 0.0051 24.1 7.7 90 26-132 8-98 (164)
324 PRK04346 tryptophan synthase s 33.5 2.7E+02 0.0058 27.7 9.0 47 84-132 213-261 (397)
325 TIGR01274 ACC_deam 1-aminocycl 33.4 4.4E+02 0.0096 25.3 11.2 31 80-110 172-202 (337)
326 cd06332 PBP1_aromatic_compound 33.3 3E+02 0.0064 25.6 9.2 95 15-124 116-211 (333)
327 PF10281 Ish1: Putative stress 33.3 1.2E+02 0.0025 19.2 4.3 30 293-323 7-36 (38)
328 cd00951 KDGDH 5-dehydro-4-deox 33.2 4.1E+02 0.009 24.9 10.4 85 44-132 17-103 (289)
329 PRK07476 eutB threonine dehydr 33.1 3.2E+02 0.0069 26.0 9.4 24 82-109 157-180 (322)
330 cd01537 PBP1_Repressors_Sugar_ 32.9 2.6E+02 0.0057 24.4 8.4 90 20-116 105-197 (264)
331 cd00001 PTS_IIB_man PTS_IIB, P 32.8 2.7E+02 0.0059 23.6 7.8 75 25-116 17-91 (151)
332 PF00701 DHDPS: Dihydrodipicol 32.7 3.6E+02 0.0077 25.2 9.5 82 45-129 19-102 (289)
333 cd03522 MoeA_like MoeA_like. T 32.6 2.3E+02 0.0051 27.2 8.2 53 47-109 178-231 (312)
334 PRK08198 threonine dehydratase 32.6 4.3E+02 0.0093 26.0 10.5 36 96-132 170-206 (404)
335 cd01542 PBP1_TreR_like Ligand- 32.6 3.5E+02 0.0076 23.9 9.9 70 47-129 15-84 (259)
336 cd06275 PBP1_PurR Ligand-bindi 32.5 3.6E+02 0.0078 24.0 9.8 76 45-132 13-88 (269)
337 PRK03670 competence damage-ind 32.5 2.8E+02 0.006 25.7 8.4 62 48-119 20-84 (252)
338 PF02302 PTS_IIB: PTS system, 32.1 1.3E+02 0.0028 22.4 5.3 33 36-70 1-35 (90)
339 cd06324 PBP1_ABC_sugar_binding 32.1 4.1E+02 0.009 24.5 10.0 75 46-132 15-91 (305)
340 PRK05625 5-amino-6-(5-phosphor 31.8 2.6E+02 0.0057 24.8 8.1 81 35-133 94-174 (217)
341 COG0556 UvrB Helicase subunit 31.7 1.9E+02 0.004 30.2 7.5 58 33-105 445-504 (663)
342 COG2454 Uncharacterized conser 31.6 1.4E+02 0.003 26.8 5.8 93 4-117 87-193 (211)
343 COG5012 Predicted cobalamin bi 31.0 58 0.0013 29.6 3.5 35 81-116 170-205 (227)
344 PLN02384 ribose-5-phosphate is 30.9 71 0.0015 29.9 4.2 37 98-134 49-88 (264)
345 COG2379 GckA Putative glycerat 30.8 2.8E+02 0.006 27.6 8.3 21 168-188 192-212 (422)
346 cd03134 GATase1_PfpI_like A ty 30.7 1.7E+02 0.0036 24.5 6.4 92 37-133 2-104 (165)
347 TIGR01508 rib_reduct_arch 2,5- 30.6 3.2E+02 0.0069 24.3 8.4 81 35-133 90-170 (210)
348 PRK10423 transcriptional repre 30.5 4.4E+02 0.0096 24.4 10.1 74 45-130 70-143 (327)
349 PF02401 LYTB: LytB protein; 30.5 4.7E+02 0.01 24.7 10.3 90 35-132 155-244 (281)
350 TIGR01139 cysK cysteine syntha 30.4 4.3E+02 0.0093 24.7 9.7 45 84-132 154-199 (298)
351 PRK13566 anthranilate synthase 30.4 2.8E+02 0.0061 30.0 9.1 81 34-134 526-609 (720)
352 PRK11761 cysM cysteine synthas 30.3 2.7E+02 0.0059 26.2 8.3 46 83-132 157-203 (296)
353 cd06296 PBP1_CatR_like Ligand- 30.3 3.9E+02 0.0085 23.7 9.5 75 45-132 13-87 (270)
354 PRK08883 ribulose-phosphate 3- 30.1 4.2E+02 0.009 23.9 10.3 87 34-132 106-197 (220)
355 PF01202 SKI: Shikimate kinase 30.1 46 0.00099 28.1 2.7 77 36-132 18-94 (158)
356 cd06270 PBP1_GalS_like Ligand 30.0 4E+02 0.0087 23.7 9.8 75 45-132 13-87 (268)
357 cd00423 Pterin_binding Pterin 29.9 1.8E+02 0.0038 26.9 6.8 29 77-109 20-48 (258)
358 cd06373 PBP1_NPR_like Ligand b 29.8 2.6E+02 0.0056 27.1 8.4 88 25-124 134-226 (396)
359 cd07038 TPP_PYR_PDC_IPDC_like 29.8 2.1E+02 0.0046 24.3 6.8 88 26-132 5-94 (162)
360 PF02084 Bindin: Bindin; Inte 29.5 54 0.0012 29.7 3.0 50 287-346 101-152 (238)
361 TIGR02079 THD1 threonine dehyd 29.5 4.8E+02 0.01 26.0 10.1 34 98-132 170-204 (409)
362 PF08759 DUF1792: Domain of un 29.4 1.2E+02 0.0026 27.7 5.2 95 8-117 84-183 (225)
363 TIGR01127 ilvA_1Cterm threonin 29.3 5.1E+02 0.011 25.2 10.3 35 97-132 149-184 (380)
364 KOG1116 Sphingosine kinase, in 29.3 1.5E+02 0.0032 31.0 6.4 88 32-132 177-276 (579)
365 PLN02565 cysteine synthase 29.3 4.7E+02 0.01 25.0 9.8 34 98-132 174-208 (322)
366 PF04101 Glyco_tran_28_C: Glyc 29.3 39 0.00084 28.6 2.1 26 100-132 75-101 (167)
367 cd00860 ThrRS_anticodon ThrRS 29.2 2.3E+02 0.005 20.7 6.9 17 80-96 14-30 (91)
368 cd02067 B12-binding B12 bindin 29.2 2E+02 0.0043 22.7 6.2 31 79-111 63-93 (119)
369 PRK08250 glutamine amidotransf 29.2 4.3E+02 0.0093 24.0 9.1 80 36-133 2-94 (235)
370 PRK07178 pyruvate carboxylase 29.1 2.3E+02 0.0051 28.7 8.1 21 80-103 59-79 (472)
371 PF10137 TIR-like: Predicted n 29.1 1.7E+02 0.0037 24.0 5.8 64 36-113 1-64 (125)
372 smart00046 DAGKc Diacylglycero 29.1 2.9E+02 0.0063 22.2 7.2 32 98-132 50-87 (124)
373 PRK15418 transcriptional regul 29.0 3.3E+02 0.0071 26.1 8.6 76 49-132 73-149 (318)
374 TIGR01124 ilvA_2Cterm threonin 28.8 3.8E+02 0.0082 27.6 9.5 34 98-132 168-202 (499)
375 cd06367 PBP1_iGluR_NMDA N-term 28.8 3.9E+02 0.0085 25.4 9.3 103 19-132 122-230 (362)
376 COG1646 Predicted phosphate-bi 28.8 3.1E+02 0.0066 25.3 7.7 52 75-133 23-80 (240)
377 TIGR03249 KdgD 5-dehydro-4-deo 28.7 5E+02 0.011 24.4 10.2 82 44-129 22-105 (296)
378 COG2390 DeoR Transcriptional r 28.7 1.6E+02 0.0036 28.3 6.4 75 49-132 70-147 (321)
379 COG1770 PtrB Protease II [Amin 28.5 1E+02 0.0023 32.6 5.3 57 77-133 505-568 (682)
380 cd06336 PBP1_ABC_ligand_bindin 28.5 3.2E+02 0.0069 25.9 8.6 81 25-116 130-214 (347)
381 PF02608 Bmp: Basic membrane p 28.4 1.6E+02 0.0034 27.9 6.3 73 49-132 21-94 (306)
382 cd06301 PBP1_rhizopine_binding 28.2 4.3E+02 0.0094 23.5 10.7 76 46-132 14-90 (272)
383 cd08194 Fe-ADH6 Iron-containin 28.2 3.2E+02 0.007 26.6 8.6 50 252-306 254-303 (375)
384 PRK09756 PTS system N-acetylga 28.2 3.2E+02 0.007 23.4 7.5 74 25-116 22-96 (158)
385 cd06376 PBP1_mGluR_groupIII Li 28.1 3.6E+02 0.0078 27.0 9.2 101 15-124 154-256 (463)
386 cd06386 PBP1_NPR_C_like Ligand 28.0 2.4E+02 0.0052 27.5 7.7 95 25-132 129-230 (387)
387 cd06295 PBP1_CelR Ligand bindi 28.0 4.4E+02 0.0096 23.6 9.6 73 45-132 24-96 (275)
388 COG1609 PurR Transcriptional r 27.9 4E+02 0.0087 25.5 9.1 72 48-132 75-146 (333)
389 cd06319 PBP1_ABC_sugar_binding 27.6 4.5E+02 0.0096 23.5 9.6 74 47-131 15-88 (277)
390 PRK06490 glutamine amidotransf 27.4 4.8E+02 0.01 23.8 9.1 82 34-133 7-96 (239)
391 PRK05370 argininosuccinate syn 27.4 2.3E+02 0.005 28.7 7.3 62 27-96 4-66 (447)
392 PF00205 TPP_enzyme_M: Thiamin 27.3 31 0.00068 28.3 1.1 32 33-66 10-42 (137)
393 PLN02550 threonine dehydratase 27.1 4.4E+02 0.0096 27.8 9.7 53 288-342 466-522 (591)
394 cd06310 PBP1_ABC_sugar_binding 27.0 4.6E+02 0.0099 23.4 11.3 77 46-131 14-90 (273)
395 PRK08883 ribulose-phosphate 3- 26.9 4.1E+02 0.009 24.0 8.5 102 9-132 34-137 (220)
396 PRK08526 threonine dehydratase 26.9 5.1E+02 0.011 25.7 9.8 36 96-132 168-204 (403)
397 PLN02735 carbamoyl-phosphate s 26.8 3.8E+02 0.0081 30.6 9.7 76 35-117 24-119 (1102)
398 cd08189 Fe-ADH5 Iron-containin 26.8 4.1E+02 0.009 25.9 9.1 55 247-306 253-307 (374)
399 PRK05752 uroporphyrinogen-III 26.7 4.9E+02 0.011 23.7 9.3 67 33-111 129-195 (255)
400 PRK08591 acetyl-CoA carboxylas 26.6 2.8E+02 0.006 27.7 8.0 23 80-105 60-82 (451)
401 PRK08638 threonine dehydratase 26.6 5.2E+02 0.011 24.9 9.6 44 82-130 165-209 (333)
402 PRK10624 L-1,2-propanediol oxi 26.5 6.2E+02 0.013 24.8 11.3 54 248-306 257-310 (382)
403 PF04414 tRNA_deacylase: D-ami 26.4 2E+02 0.0043 26.1 6.1 44 30-79 43-86 (213)
404 cd06291 PBP1_Qymf_like Ligand 26.4 4.6E+02 0.01 23.2 8.9 72 46-133 14-85 (265)
405 cd01452 VWA_26S_proteasome_sub 26.3 4.5E+02 0.0097 23.2 8.3 32 72-107 116-147 (187)
406 TIGR03575 selen_PSTK_euk L-ser 26.3 69 0.0015 31.2 3.4 62 43-112 8-83 (340)
407 KOG0780 Signal recognition par 26.3 2.1E+02 0.0046 28.6 6.6 66 34-108 129-194 (483)
408 PF02310 B12-binding: B12 bind 26.2 3.1E+02 0.0067 21.4 6.9 27 79-108 64-90 (121)
409 TIGR03013 EpsB_2 sugar transfe 26.1 3.4E+02 0.0073 27.2 8.5 94 34-132 124-222 (442)
410 PF06506 PrpR_N: Propionate ca 26.1 90 0.002 27.0 3.8 44 79-132 18-62 (176)
411 PRK03604 moaC bifunctional mol 26.0 2.4E+02 0.0051 27.2 6.9 68 37-114 160-234 (312)
412 KOG4513 Phosphoglycerate mutas 25.9 3.3E+02 0.0072 27.0 7.8 68 37-108 128-200 (531)
413 PF04198 Sugar-bind: Putative 25.9 2E+02 0.0044 26.5 6.4 75 49-132 9-85 (255)
414 TIGR03025 EPS_sugtrans exopoly 25.9 4E+02 0.0086 26.6 9.0 93 34-132 125-224 (445)
415 COG1171 IlvA Threonine dehydra 25.8 4.9E+02 0.011 25.4 9.1 35 98-132 177-211 (347)
416 PF13727 CoA_binding_3: CoA-bi 25.8 2.2E+02 0.0048 23.6 6.3 50 79-130 126-175 (175)
417 PRK10124 putative UDP-glucose 25.8 3.9E+02 0.0084 27.1 8.9 94 34-132 143-239 (463)
418 cd01575 PBP1_GntR Ligand-bindi 25.6 4.7E+02 0.01 23.1 9.4 71 46-129 14-84 (268)
419 cd06382 PBP1_iGluR_Kainate N-t 25.6 4E+02 0.0086 24.9 8.6 85 24-123 120-205 (327)
420 cd05007 SIS_Etherase N-acetylm 25.5 5.4E+02 0.012 23.8 9.3 49 82-130 103-152 (257)
421 PRK15414 phosphomannomutase Cp 25.4 3.9E+02 0.0085 26.9 8.9 57 43-104 179-244 (456)
422 COG4152 ABC-type uncharacteriz 25.4 4.2E+02 0.0091 25.0 8.0 75 280-364 96-178 (300)
423 PRK03620 5-dehydro-4-deoxygluc 25.2 5.8E+02 0.013 24.1 10.4 82 44-129 24-107 (303)
424 cd06312 PBP1_ABC_sugar_binding 25.2 5E+02 0.011 23.2 11.3 77 46-132 15-91 (271)
425 PF03853 YjeF_N: YjeF-related 25.2 3.4E+02 0.0074 23.2 7.3 97 33-133 24-143 (169)
426 PF02724 CDC45: CDC45-like pro 25.0 3.6E+02 0.0079 28.6 8.7 69 36-116 1-70 (622)
427 cd03070 PDI_b_ERp44 PDIb famil 24.9 1.6E+02 0.0034 22.8 4.5 50 69-130 21-70 (91)
428 TIGR01136 cysKM cysteine synth 24.7 5.8E+02 0.013 23.9 10.7 34 98-132 165-199 (299)
429 cd00858 GlyRS_anticodon GlyRS 24.5 3.4E+02 0.0073 21.6 6.8 16 81-96 42-57 (121)
430 PRK10936 TMAO reductase system 24.5 6.1E+02 0.013 24.0 11.7 89 34-132 46-137 (343)
431 TIGR02990 ectoine_eutA ectoine 24.5 5.5E+02 0.012 23.5 11.0 97 26-132 113-215 (239)
432 PRK12757 cell division protein 24.4 5.4E+02 0.012 24.0 8.6 68 35-106 183-256 (256)
433 PF03358 FMN_red: NADPH-depend 24.2 3.3E+02 0.0071 22.3 6.9 56 36-93 2-71 (152)
434 PRK09224 threonine dehydratase 24.1 5.4E+02 0.012 26.4 9.6 34 98-132 171-205 (504)
435 PRK14075 pnk inorganic polypho 24.0 4.3E+02 0.0093 24.4 8.2 69 37-132 3-71 (256)
436 COG0745 OmpR Response regulato 23.8 5.1E+02 0.011 23.5 8.5 74 36-129 2-78 (229)
437 TIGR03492 conserved hypothetic 23.7 1.5E+02 0.0032 29.3 5.3 39 86-133 83-123 (396)
438 TIGR02955 TMAO_TorT TMAO reduc 23.6 5.8E+02 0.012 23.4 10.1 74 46-129 14-87 (295)
439 cd06333 PBP1_ABC-type_HAAT_lik 23.6 5.8E+02 0.013 23.5 11.3 80 26-116 126-208 (312)
440 PF04723 GRDA: Glycine reducta 23.5 4.5E+02 0.0097 22.1 9.1 91 33-132 4-100 (150)
441 PRK01175 phosphoribosylformylg 23.4 3.9E+02 0.0085 24.9 7.8 82 34-133 3-99 (261)
442 cd06321 PBP1_ABC_sugar_binding 23.4 5.3E+02 0.012 22.9 9.4 76 46-132 14-91 (271)
443 PF14639 YqgF: Holliday-juncti 23.3 1.2E+02 0.0026 25.7 4.0 40 73-117 42-81 (150)
444 cd01545 PBP1_SalR Ligand-bindi 23.2 5.3E+02 0.011 22.8 9.6 76 45-132 13-89 (270)
445 PRK13948 shikimate kinase; Pro 23.1 63 0.0014 28.3 2.3 17 99-115 81-97 (182)
446 cd05006 SIS_GmhA Phosphoheptos 23.1 3.9E+02 0.0084 22.8 7.3 39 93-131 97-136 (177)
447 PRK09189 uroporphyrinogen-III 23.0 4.9E+02 0.011 23.3 8.4 65 33-109 117-181 (240)
448 PF03129 HGTP_anticodon: Antic 23.0 2.5E+02 0.0055 20.9 5.5 44 80-129 15-58 (94)
449 cd06393 PBP1_iGluR_Kainate_Glu 23.0 6.9E+02 0.015 24.1 10.2 83 25-120 131-213 (384)
450 PF04007 DUF354: Protein of un 23.0 2.7E+02 0.0059 27.0 6.8 79 34-130 27-110 (335)
451 cd06322 PBP1_ABC_sugar_binding 22.9 5.4E+02 0.012 22.8 9.7 76 46-132 14-89 (267)
452 KOG0369 Pyruvate carboxylase [ 22.9 93 0.002 33.1 3.7 77 21-108 117-197 (1176)
453 PRK08639 threonine dehydratase 22.9 5.1E+02 0.011 25.8 9.0 48 83-132 167-215 (420)
454 PF00478 IMPDH: IMP dehydrogen 22.8 98 0.0021 30.3 3.7 39 85-128 161-216 (352)
455 PF02585 PIG-L: GlcNAc-PI de-N 22.8 3.9E+02 0.0085 21.2 7.8 50 50-104 55-107 (128)
456 cd06280 PBP1_LacI_like_4 Ligan 22.7 5.4E+02 0.012 22.8 9.7 74 45-132 13-86 (263)
457 cd06351 PBP1_iGluR_N_LIVBP_lik 22.7 6E+02 0.013 23.3 9.3 103 19-133 118-223 (328)
458 PLN02735 carbamoyl-phosphate s 22.6 1.9E+02 0.0042 32.9 6.5 59 52-116 599-669 (1102)
459 cd06293 PBP1_LacI_like_11 Liga 22.5 5.5E+02 0.012 22.8 9.9 75 45-132 13-87 (269)
460 cd01972 Nitrogenase_VnfE_like 22.4 3.4E+02 0.0073 27.1 7.7 37 84-129 363-399 (426)
461 PF02310 B12-binding: B12 bind 22.3 3.8E+02 0.0082 20.8 8.8 71 36-120 2-75 (121)
462 COG0552 FtsY Signal recognitio 22.3 4.5E+02 0.0097 25.6 7.9 83 36-132 140-230 (340)
463 PRK00299 sulfur transfer prote 22.3 2.4E+02 0.0052 21.0 5.0 58 1-66 6-63 (81)
464 PF11965 DUF3479: Domain of un 22.2 3.5E+02 0.0076 23.4 6.6 73 36-119 2-78 (164)
465 cd06268 PBP1_ABC_transporter_L 22.2 5.5E+02 0.012 22.7 10.2 61 64-132 39-99 (298)
466 PRK09701 D-allose transporter 22.1 6.4E+02 0.014 23.4 12.0 89 35-132 25-116 (311)
467 cd00885 cinA Competence-damage 22.1 3.3E+02 0.0071 23.5 6.6 74 47-132 18-94 (170)
468 PF02230 Abhydrolase_2: Phosph 22.0 3.1E+02 0.0066 24.1 6.6 56 35-92 156-214 (216)
469 PTZ00314 inosine-5'-monophosph 22.0 2.2E+02 0.0048 29.2 6.3 52 78-138 328-380 (495)
470 COG0303 MoeA Molybdopterin bio 22.0 1.7E+02 0.0036 29.3 5.3 58 52-120 207-264 (404)
471 PRK02231 ppnK inorganic polyph 22.0 1.1E+02 0.0025 28.7 3.9 31 99-132 44-75 (272)
472 cd06354 PBP1_BmpA_PnrA_like Pe 22.0 5.9E+02 0.013 22.9 10.6 71 47-130 18-88 (265)
473 cd00953 KDG_aldolase KDG (2-ke 22.0 6.5E+02 0.014 23.4 9.9 76 49-130 21-98 (279)
474 PRK10355 xylF D-xylose transpo 21.9 6.8E+02 0.015 23.6 10.7 87 35-132 26-115 (330)
475 COG5441 Uncharacterized conser 21.9 1.8E+02 0.0039 27.9 5.1 51 83-133 75-127 (401)
476 PRK13265 glycine/sarcosine/bet 21.9 2.2E+02 0.0049 23.9 5.0 90 33-131 5-100 (154)
477 cd06323 PBP1_ribose_binding Pe 21.9 5.6E+02 0.012 22.6 9.5 75 46-131 14-88 (268)
478 cd01079 NAD_bind_m-THF_DH NAD 21.7 1.2E+02 0.0026 27.1 3.7 30 33-67 61-90 (197)
479 PF03830 PTSIIB_sorb: PTS syst 21.6 3.4E+02 0.0073 23.0 6.4 75 25-116 18-92 (151)
480 PRK10076 pyruvate formate lyas 21.6 5.8E+02 0.013 22.9 8.3 21 76-96 188-208 (213)
481 COG0794 GutQ Predicted sugar p 21.5 4.2E+02 0.0091 23.8 7.2 91 35-144 39-130 (202)
482 cd05014 SIS_Kpsf KpsF-like pro 21.5 4.1E+02 0.0088 20.9 8.1 77 39-130 4-81 (128)
483 PRK12383 putative mutase; Prov 21.5 3E+02 0.0065 27.6 6.8 82 33-129 127-209 (406)
484 PRK00043 thiE thiamine-phospha 21.3 5E+02 0.011 22.5 7.9 82 35-132 7-90 (212)
485 COG0075 Serine-pyruvate aminot 21.1 3.8E+02 0.0083 26.6 7.5 84 33-128 79-166 (383)
486 PRK12474 hypothetical protein; 21.0 3E+02 0.0065 28.2 7.1 35 30-66 197-232 (518)
487 cd03814 GT1_like_2 This family 21.0 6.5E+02 0.014 23.0 9.2 43 82-129 71-113 (364)
488 cd06299 PBP1_LacI_like_13 Liga 20.9 5.9E+02 0.013 22.5 10.5 75 45-132 13-87 (265)
489 PF06415 iPGM_N: BPG-independe 20.8 3.7E+02 0.0081 24.5 6.8 57 38-96 34-96 (223)
490 PRK12833 acetyl-CoA carboxylas 20.8 4.8E+02 0.01 26.4 8.5 33 78-114 61-93 (467)
491 PF00148 Oxidored_nitro: Nitro 20.8 7.8E+02 0.017 23.9 9.8 10 122-131 215-224 (398)
492 cd06384 PBP1_NPR_B Ligand-bind 20.8 3.5E+02 0.0076 26.3 7.4 86 26-123 136-226 (399)
493 PRK08105 flavodoxin; Provision 20.8 5E+02 0.011 21.7 7.6 30 36-67 3-34 (149)
494 TIGR03022 WbaP_sugtrans Undeca 20.7 6.6E+02 0.014 25.1 9.4 93 34-132 125-225 (456)
495 COG0054 RibH Riboflavin syntha 20.6 5.4E+02 0.012 22.0 7.6 64 34-105 12-79 (152)
496 cd06282 PBP1_GntR_like_2 Ligan 20.6 5.9E+02 0.013 22.4 9.7 75 46-132 14-88 (266)
497 PF03610 EIIA-man: PTS system 20.6 4.3E+02 0.0093 20.8 9.6 71 37-114 2-76 (116)
498 TIGR00433 bioB biotin syntheta 20.5 6.8E+02 0.015 23.1 9.0 17 79-95 156-172 (296)
499 PRK14191 bifunctional 5,10-met 20.4 2.2E+02 0.0047 27.0 5.4 70 2-105 140-209 (285)
500 PRK11303 DNA-binding transcrip 20.4 6.9E+02 0.015 23.1 11.1 75 46-132 76-150 (328)
No 1
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-77 Score=565.32 Aligned_cols=348 Identities=55% Similarity=0.878 Sum_probs=328.2
Q ss_pred ccccceeeecccch--hhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 13 FGNSDTLLLISNNC--LYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 13 ~~~~~~~~~~~~~~--~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
..+-++.+|.+..+ .+.++..++|++||+|+++.+.+.+++...|...| +.+..+++|+||..||++++.++++++
T Consensus 10 ~~~y~I~ig~gl~~~~~l~~~~~~~k~~ivtd~~v~~~y~~~~~~~l~~~g--~~v~~~~lp~GE~~Ksl~~~~~i~~~l 87 (360)
T COG0337 10 ERSYPIYIGSGLLSDAELAELLAGRKVAIVTDETVAPLYLEKLLATLEAAG--VEVDSIVLPDGEEYKSLETLEKIYDAL 87 (360)
T ss_pred CCceeEEEeCCcccchhhhhhccCCeEEEEECchhHHHHHHHHHHHHHhcC--CeeeEEEeCCCcccccHHHHHHHHHHH
Confidence 34556889998866 66666567899999999999999999999999999 787778999999999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehh
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 170 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~ 170 (365)
.+.+++|+|.|||+|||.+.|+++|+|++|+||+++|+|||||+||+||++|+|++||++.+||++|+||+|++|++||+
T Consensus 88 l~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~ 167 (360)
T COG0337 88 LEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTD 167 (360)
T ss_pred HHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEEEEchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchh
Q 017815 171 TLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 250 (365)
Q Consensus 171 l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~ 250 (365)
++.|||+|.+++|++|++||+++.|..+|+|++++.+.+.+.+. .+.++|.+||+.|.++|.+|++|.|+|+.||+|||
T Consensus 168 ~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~~~~l~~~~~-~l~~~I~rs~~~Ka~VV~~De~E~G~R~~LN~GHT 246 (360)
T COG0337 168 FLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEENLDALLALDP-ALEELIARSCQIKAEVVAQDEKESGLRAILNLGHT 246 (360)
T ss_pred HhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhhHHhhcCccchhhHHHHhcchH
Confidence 99999999999999999999999999999999988655554444 48899999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCC
Q 017815 251 FGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADG 330 (365)
Q Consensus 251 ~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~ 330 (365)
|+||+|+.++|..++||||||+||.+++++|+++|+++.+.++|+..+++++|+|+++++..+.+.+++.|..|||++++
T Consensus 247 ~GHAiE~~~~y~~~~HGeAVaiGmv~aa~ls~~lG~~~~~~~~r~~~~L~~~gLP~~~~~~~~~~~l~~~m~~DKK~~~g 326 (360)
T COG0337 247 FGHAIEALTGYGKWLHGEAVAIGMVMAARLSERLGLLDKADAERILNLLKRYGLPTSLPDELDAEKLLEAMARDKKVLGG 326 (360)
T ss_pred HHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccCCCcCCHHHHHHHHhhcccccCC
Confidence 99999999988669999999999999999999999999999999999999999999998667899999999999999999
Q ss_pred eEEEEeeCCCCcceEEccCCCHHHHHHHHHHHhc
Q 017815 331 LLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 364 (365)
Q Consensus 331 ~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~ 364 (365)
+++||+|++ ||++....+++++++.++++++++
T Consensus 327 ~i~~vl~~~-iG~~~~~~~v~~~~l~~~l~~~~~ 359 (360)
T COG0337 327 KIRFVLLKE-IGKAEIAEGVDEELLLDALEEVHA 359 (360)
T ss_pred ceEEEeehh-cCceEeecCCCHHHHHHHHHHHhc
Confidence 999999999 999999978999999999999875
No 2
>PLN02834 3-dehydroquinate synthase
Probab=100.00 E-value=5.9e-68 Score=524.10 Aligned_cols=348 Identities=80% Similarity=1.240 Sum_probs=321.4
Q ss_pred cceeeecccc---hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEE--EEeCCCCCCCCHHHHHHHHHHH
Q 017815 16 SDTLLLISNN---CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVEN--VILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 16 ~~~~~~~~~~---~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~--~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
.+++||.+.. +.++....++|++||+|+++++.+.+++.+.|+..| +++.+ ++++++|++|+++++.++++.+
T Consensus 79 y~I~iG~g~l~~~~~l~~~~~g~rvlIVtD~~v~~~~~~~v~~~L~~~g--~~~~v~~~v~~~gE~~ksl~~v~~~~~~l 156 (433)
T PLN02834 79 YPIYIGSGLLDHGELLQRHVHGKRVLVVTNETVAPLYLEKVVEALTAKG--PELTVESVILPDGEKYKDMETLMKVFDKA 156 (433)
T ss_pred eeEEEeCCcccCHHHHhhccCCCEEEEEECccHHHHHHHHHHHHHHhcC--CceEEEEEEecCCcCCCCHHHHHHHHHHH
Confidence 4688887763 344432236899999999999999999999999988 65544 4678999999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehh
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 170 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~ 170 (365)
++.++||+|+|||||||+++|+|||+|++|++|+|+|+||||++|++|+++++|++++.+.+||++|.|+.|++||+||+
T Consensus 157 ~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~rgiplI~VPTTllA~vDss~ggK~~i~~~~~KNlig~f~~P~~VivDp~ 236 (433)
T PLN02834 157 LESRLDRRCTFVALGGGVIGDMCGFAAASYQRGVNFVQIPTTVMAQVDSSVGGKTGVNHPLGKNMIGAFYQPQCVLIDTD 236 (433)
T ss_pred HhcCCCcCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCcCCeEEecCCCceeEEecCCcccccccccCCCEEEEcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchh
Q 017815 171 TLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 250 (365)
Q Consensus 171 l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~ 250 (365)
++.|+|++++++|++|++||+++.|.++|+|++.+..++++.+...+.+++.++|..+.+++..|+++.|+|..+|+||+
T Consensus 237 ~l~tlP~r~~~sG~~E~iK~~~i~d~~~fe~l~~~~~~~~~~~~~~l~~~i~~s~~~K~~vv~~d~~e~G~r~~Ln~GHT 316 (433)
T PLN02834 237 TLATLPDRELASGIAEVVKYGLIRDAEFFEWQEANMEKLLARDPGALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 316 (433)
T ss_pred HHhhCCHHHHHhHHHHHHHHHHhcCHHHHHHHHhhHHhHhccCHHHHHHHHHHHHHHHHHhhcCCCcccchhhhhcCcHH
Confidence 99999999999999999999999999999999988777777777888999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCC
Q 017815 251 FGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADG 330 (365)
Q Consensus 251 ~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~ 330 (365)
|+||||..++|++++|||+||+||.+++.+++++|+++++..+++.++++++|+|+++++.++.+++++.|..|||++++
T Consensus 317 ~gHAiE~~~~~~~~~HGeaVaiGm~~~~~ls~~~G~~~~~~~~~i~~ll~~~gLP~~~~~~~~~~~~~~~~~~dkK~~~~ 396 (433)
T PLN02834 317 FGHAIETGPGYGEWLHGEAVAAGTVMAADMSYRLGWIDMSLVNRIFALLKRAKLPTNPPEKMTVEMFKSLMAVDKKVADG 396 (433)
T ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHhhcccccCC
Confidence 99999997766569999999999999999999999999999999999999999999998667899999999999999999
Q ss_pred eEEEEeeCCCCcceEEccCCCHHHHHHHHHHHhcC
Q 017815 331 LLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS 365 (365)
Q Consensus 331 ~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~ 365 (365)
+++|+||++.||++.+..+++++++.+++++++++
T Consensus 397 ~i~~vl~~~~iG~~~~~~~~~~~~l~~~l~~~~~~ 431 (433)
T PLN02834 397 LLRLILLKGELGNCVFTGDFDREALEETLRAFCKS 431 (433)
T ss_pred eEEEEEecCCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 99999999328999998899999999999988864
No 3
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=100.00 E-value=1.7e-67 Score=510.24 Aligned_cols=339 Identities=33% Similarity=0.509 Sum_probs=312.3
Q ss_pred ceeeecccch----hhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 17 DTLLLISNNC----LYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 17 ~~~~~~~~~~----~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
+++||.+..+ .++++ +.+|++||+|+++.+.+.+++.+.|+++| +++..++++++|++|++++++++++++++
T Consensus 3 ~v~~G~g~l~~l~~~l~~~-g~~rvlvVtd~~v~~~~~~~l~~~L~~~g--~~~~~~~~~~~e~~k~~~~v~~~~~~~~~ 79 (355)
T cd08197 3 PYYLGENILDSVLGYLPEL-NADKYLLVTDSNVEDLYGHRLLEYLREAG--APVELLSVPSGEEHKTLSTLSDLVERALA 79 (355)
T ss_pred EEEEcCChHHHHHHHHHhc-CCCeEEEEECccHHHHHHHHHHHHHHhcC--CceEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 5678877643 44444 25899999999999889999999999988 77766788999999999999999999999
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhh
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTL 172 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~ 172 (365)
.++||+|+||||||||++|+|||+|+.|++|+|+++||||++|++||.+++++.++...+||.++.++.|.+||+||+++
T Consensus 80 ~~~dr~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IPTTlla~~da~i~~k~~vn~~~~kn~~g~~~~P~~vivDp~~l 159 (355)
T cd08197 80 LGATRRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIPTTLLAQSDSVLSLKQAVNSTYGKNLIGLYYPPSFIFIDTRVL 159 (355)
T ss_pred cCCCCCcEEEEECCcHHHHHHHHHHHHhccCCCEEEecCcccccccccccCceeeeCCCCcceeecCCCCcEEEEcHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred CCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhHH
Q 017815 173 NTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFG 252 (365)
Q Consensus 173 ~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~~ 252 (365)
.|+|++++++|++|++||+++.|+++|++++++..++..++.+.+.+++.+|+..|.++++.|+++.|+|..|||||||+
T Consensus 160 ~tlP~~~~~aG~~d~ik~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~s~~~k~~vv~~D~~e~g~r~~Ln~GHT~g 239 (355)
T cd08197 160 RTLPERQIRSGLCETVKNALAQEPDFLPYLESDLRNALDYDPDGLEEIIRLSIEAKLPVLSGDPYEKKLGLILEYGHTVG 239 (355)
T ss_pred hhCCHHHHHhhHHHHHHHHHhcCHHHHHHHHHhHHHhhccCHHHHHHHHHHHHHHHHHHhcCCCCccccchhhhCccccc
Confidence 99999999999999999999999999999998777777777778899999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCC--
Q 017815 253 HAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADG-- 330 (365)
Q Consensus 253 Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~-- 330 (365)
|++|..+. ..++||++||+||.+.++++.++|.++.+..+++.++++++|+|+.++..++.++++++|+.|||++++
T Consensus 240 halE~~~~-~~~~HGeaVa~Gm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp~~~~~~~~~~~~~~~~~~dkk~~~~~~ 318 (355)
T cd08197 240 HAVELLSQ-GGLTHGEAVAIGMLVAAEIARRMGLLSEEDVALHYELLSKLGLPTRIPSDISLDDILHRVRYDNKRGYIPL 318 (355)
T ss_pred HHHHhhcC-CCcChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHhccCccCCCC
Confidence 99998764 368999999999999999999999999999999999999999999887557899999999999999999
Q ss_pred ---eEEEEeeCCCCcceEEc-----cCCCHHHHHHHHH
Q 017815 331 ---LLRLILLKGPLGNCVFT-----GDYDRKALDDTLY 360 (365)
Q Consensus 331 ---~~~~~l~~~~~g~~~~~-----~~~~~~~l~~~~~ 360 (365)
+++|+||++ ||++.+. .+++.+++.++++
T Consensus 319 ~~~~~~~vl~~~-iG~~~~~~~~~~~~~~~~~~~~~~~ 355 (355)
T cd08197 319 DADQVPMVLLEG-LGKPAGTNGTPLTPVPLEVIKEAIE 355 (355)
T ss_pred CCCeEEEEEEcC-CCcEEEecCcccCCCCHHHHHHHhC
Confidence 999999999 9999874 4799999887763
No 4
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=100.00 E-value=1e-66 Score=503.60 Aligned_cols=326 Identities=34% Similarity=0.472 Sum_probs=301.0
Q ss_pred CceEEEEEccCchHHH---HHHHHHHHhhCCCCce--EEEEEeCCCCCCCCH-HHHHHHHHHHHHcCCCCcceEEEecCc
Q 017815 34 GKKVLVVTNNTVAPLY---LDKVTDALTRGNPNVS--VENVILPDGENYKNM-DTLMKVFDKAIESRLDRRCTFVALGGG 107 (365)
Q Consensus 34 ~~~~livtd~~~~~~~---~~~v~~~L~~~g~~i~--v~~~~~~~~e~~~~~-~~v~~~~~~~~~~~~dr~~~IIaiGGG 107 (365)
.+|++||||+++.+.+ .+++.+.|+.+|..+. +..+.++++|+.++. +++.++++++.++++||+|+|||+|||
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG 109 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGG 109 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECCh
Confidence 5899999999998853 5888888987772122 345678899999995 899999999999999999999999999
Q ss_pred hHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhhCCCCHHHHHhcHHHH
Q 017815 108 VIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEV 187 (365)
Q Consensus 108 sv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~ 187 (365)
+++|+|||+|++|+||+|+|+||||++|++||++++++.+|....||++|.|++|..|++||+++.|+|++++++|++|+
T Consensus 110 ~v~D~ag~vA~~~~rGip~I~IPTTlla~vDs~~g~k~~vn~~~~knlvg~f~~P~~viiDp~~l~tlP~r~~~~G~aE~ 189 (369)
T cd08198 110 AVLDAVGYAAATAHRGVRLIRIPTTVLAQNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDKRAGLAEA 189 (369)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCchhhhCCCeeeeecccCCCCcceeccccCCCEEEEcHHHHhhCCHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhh--hcchhhhccccccCcchhHHHHhhhccCCCCCC
Q 017815 188 IKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVV--SLDEKESGLRATLNLGHTFGHAIETGFGYGQWL 265 (365)
Q Consensus 188 lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v--~~d~~~~g~r~~l~~gH~~~Hale~~~~~~~~~ 265 (365)
+||+++.||++|++++++...+...+.+.+.+++.+|+..|.+++ +.|+++.|.|+.+|+||||+||+|...+| .++
T Consensus 190 iK~~~i~d~~l~~~l~~~~~~~~~~~~~~~~~ii~~s~~~K~~~v~~~~D~~e~g~r~~Ln~GHT~gHAlE~~~~~-~~~ 268 (369)
T cd08198 190 VKVALIKDAAFFEWLEENAAALASFDPDVMEELIRRCAELHLEHIAAGGDPFELGSARPLDFGHWSAHKLEQLSNY-ALR 268 (369)
T ss_pred HHHHhhCCHHHHHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCchhccccccccccchhHHHHHhcCCC-CCC
Confidence 999999999999999987777766667778899999999999988 89999999999999999999999998877 699
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-C----CHHHHHHHHHhcccccCCeEEEEeeCCC
Q 017815 266 HGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-M----TVEMFKSIMAVDKKVADGLLRLILLKGP 340 (365)
Q Consensus 266 HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~-i----~~~~~~~~l~~dkk~~~~~~~~~l~~~~ 340 (365)
||||||+||.++++++.++|.++++..+++.++++++|+|++++.. + +.+++++.|.+|||+++++++|+||++
T Consensus 269 HGeAVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~glp~~~~~~~~~~~~~~~~~~~~~~~dKK~~~g~i~~vl~~~- 347 (369)
T cd08198 269 HGEAVAIGIALDTLYSVLLGLLSEAEAERVLALLEALGFPLWHPALERRDSKGELEVLKGLEEFREHLGGELTITLLTG- 347 (369)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCcchhhccccCCCHHHHHHHHHHhhcccCCeEEEEEEcC-
Confidence 9999999999999999999999999999999999999999998754 2 789999999999999999999999999
Q ss_pred CcceEEccCCCHHHHHHHHHH
Q 017815 341 LGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 341 ~g~~~~~~~~~~~~l~~~~~~ 361 (365)
||++.+..+++++++.+++.+
T Consensus 348 iG~~~~~~~v~~~~i~~~~~~ 368 (369)
T cd08198 348 IGRGIEVHEIDLELLEEAIDE 368 (369)
T ss_pred CCcEEEECCCCHHHHHHHHHh
Confidence 999999889999999998875
No 5
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=100.00 E-value=1.2e-66 Score=504.96 Aligned_cols=339 Identities=53% Similarity=0.847 Sum_probs=311.3
Q ss_pred ceeeecccchhhhh----ccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 17 DTLLLISNNCLYYR----HVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 17 ~~~~~~~~~~~l~~----~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
+++||.+..+.+.+ ...++|++||+|+++.+.+.+++.+.|+.+| +++.+++++++|++|+++++.++++++++
T Consensus 3 ~i~~G~g~~~~l~~~~~~~~~~~~~livtd~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 80 (345)
T cd08195 3 PIYIGSGLLKELGELLAKLPKGSKILIVTDENVAPLYLEKLKAALEAAG--FEVEVIVIPAGEASKSLETLEKLYDALLE 80 (345)
T ss_pred eEEEcCchHhHHHHHHHhccCCCeEEEEECCchHHHHHHHHHHHHHhcC--CceEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 57788877444433 2235899999999999989999999999988 77777889999999999999999999999
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhh
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTL 172 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~ 172 (365)
++++|+|+||||||||++|+|||+|+.|++|+|+|+||||++|++||+++++++++.+.+||.++.++.|++||+||+++
T Consensus 81 ~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~VPTT~~a~vds~~~~k~~i~~~~~kn~~g~~~~P~~viiD~~~l 160 (345)
T cd08195 81 AGLDRKSLIIALGGGVVGDLAGFVAATYMRGIDFIQIPTTLLAQVDSSVGGKTGVNHPLGKNLIGAFYQPKLVLIDTDFL 160 (345)
T ss_pred cCCCCCCeEEEECChHHHhHHHHHHHHHhcCCCeEEcchhHHHHhhccCCCcceecCCCCCceecccCCCCEEEEehHHh
Confidence 99999999999999999999999999999999999999999899999999999999888899999999999999999999
Q ss_pred CCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhHH
Q 017815 173 NTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFG 252 (365)
Q Consensus 173 ~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~~ 252 (365)
.|+|++++++|++|++||+++.||.+|++++.+.........+.+.+++.+++..+.+++..|+.+.|+|..+|+||+|+
T Consensus 161 ~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~~~r~~ln~GHt~g 240 (345)
T cd08195 161 KTLPEREFRSGLAEVIKYGLIADAELFEWLEENKEAILALDPEALEEIIARSCEIKAEVVEQDEREKGLRAILNFGHTFG 240 (345)
T ss_pred hhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHHHHHHhccCccccCCceeecCcccch
Confidence 99999999999999999999999999999987655555556677889999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCCeE
Q 017815 253 HAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLL 332 (365)
Q Consensus 253 Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~~~ 332 (365)
|+||....+.+++||++||+||.+.+++++++|.++.+..+++.++++++|+|+.++ .++.++++++|+.|||++++++
T Consensus 241 HalE~~~~~~~~~HGeaVaiGm~~~~~l~~~~g~~~~~~~~~i~~~l~~~g~p~~~~-~~~~~~~~~~l~~dkk~~~~~~ 319 (345)
T cd08195 241 HAIEALTGYGTLLHGEAVAIGMVAAARLSERLGLLSEEDLERIEKLLKKLGLPTSLP-DLDAEDLLEAMKHDKKNRGGKI 319 (345)
T ss_pred HHHHhhcCCCCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHHhhcccCCcE
Confidence 999998653468999999999999999999999999999999999999999999884 3789999999999999999999
Q ss_pred EEEeeCCCCcceEEccCCCHHHHHHHH
Q 017815 333 RLILLKGPLGNCVFTGDYDRKALDDTL 359 (365)
Q Consensus 333 ~~~l~~~~~g~~~~~~~~~~~~l~~~~ 359 (365)
+|+||++ +|++.+..++++++|.+++
T Consensus 320 ~~vl~~~-iG~~~~~~~v~~~~l~~~~ 345 (345)
T cd08195 320 RFVLLKG-IGKAVIVKDVPEEELREAL 345 (345)
T ss_pred EEEEEcC-CcceEEeCCCCHHHHHHhC
Confidence 9999999 9999998789999998753
No 6
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=100.00 E-value=3.7e-66 Score=503.63 Aligned_cols=345 Identities=56% Similarity=0.888 Sum_probs=318.0
Q ss_pred cccceeeecccch----hhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHH
Q 017815 14 GNSDTLLLISNNC----LYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 89 (365)
Q Consensus 14 ~~~~~~~~~~~~~----~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~ 89 (365)
.|.+++||.+.-+ .++++ +.+|++||+|+++.+.+.+++.+.|+..| +++..++++++|++|++++++++++.
T Consensus 8 ~~~~v~~G~g~~~~l~~~l~~~-~~~~~livtd~~~~~~~~~~v~~~L~~~g--i~~~~~~~~~~e~~~~~~~v~~~~~~ 84 (358)
T PRK00002 8 RSYPIIIGKGLLSELGELLAPL-KGKKVAIVTDETVAPLYLEKLRASLEAAG--FEVDVVVLPDGEQYKSLETLEKIYDA 84 (358)
T ss_pred CCCcEEEeCChHHHHHHHHHhc-CCCeEEEEECCchHHHHHHHHHHHHHhcC--CceEEEEeCCCCCCCCHHHHHHHHHH
Confidence 5789999998744 44444 35899999999999889999999999988 77766778999999999999999999
Q ss_pred HHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEeh
Q 017815 90 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDT 169 (365)
Q Consensus 90 ~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~ 169 (365)
+++.+++|.|+||||||||++|+||++|+.+.+++|+|+||||++|++||+++++++++.+.+||..+.++.|.+||+||
T Consensus 85 ~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~gip~i~IPTT~~s~~ds~~~~k~~i~~~~~K~~~g~~~~P~~vi~Dp 164 (358)
T PRK00002 85 LLEAGLDRSDTLIALGGGVIGDLAGFAAATYMRGIRFIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDL 164 (358)
T ss_pred HHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCEEEcCchhhhccccCcCCceecCCcccceeeeecCCCceEEEcH
Confidence 99999998999999999999999999999899999999999998889999999999999888899999999999999999
Q ss_pred hhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcch
Q 017815 170 DTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGH 249 (365)
Q Consensus 170 ~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH 249 (365)
+++.++|++++++|++|++||+++.||.+|++++.+..+..+...+.+.+.+.+++..+.+++.+|+++.|+|+.+|+||
T Consensus 165 ~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~g~r~~ln~GH 244 (358)
T PRK00002 165 DFLKTLPERELRAGLAEVIKYGLIADPEFFEWLEANVDALLALDGEALEEAIARSCEIKADVVAADERESGLRALLNFGH 244 (358)
T ss_pred HHHccCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCccccccHHHhccc
Confidence 99999999999999999999999999999999987666665556678889999999999999999999999999999999
Q ss_pred hHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccC
Q 017815 250 TFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVAD 329 (365)
Q Consensus 250 ~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~ 329 (365)
+|+|+||....+.+++||++||+||.+.++++.++|.++++..+++.++++++|+|+.++ .++.++++++|+.|||+|+
T Consensus 245 t~~HalE~~~~~~~~~HG~aVa~Gm~~~~~l~~~~g~~~~~~~~~~~~~l~~~g~p~~~~-~~~~~~~~~~l~~dkk~~~ 323 (358)
T PRK00002 245 TFGHAIEAETGYGKWLHGEAVAIGMVMAARLSERLGLLSEADAERIRALLERAGLPTSLP-DLDAEALLEAMKRDKKVRG 323 (358)
T ss_pred hHHHHHhcccCCCCcChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHHhhhccC
Confidence 999999998654358999999999999999999999999999999999999999999887 4799999999999999999
Q ss_pred CeEEEEeeCCCCcceEEccCCCHHHHHHHHHHHh
Q 017815 330 GLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 363 (365)
Q Consensus 330 ~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~ 363 (365)
++++|+||++ +|++.+..+++++++.++++++.
T Consensus 324 ~~~~~vl~~~-ig~~~~~~~v~~~~l~~~~~~~~ 356 (358)
T PRK00002 324 GKLRFVLLKG-IGKAVIAEDVDDELLLAALEECL 356 (358)
T ss_pred CCEEEEEecC-CccEEEeCCCCHHHHHHHHHHHh
Confidence 9999999999 99999988899999999998764
No 7
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=100.00 E-value=1.3e-65 Score=494.80 Aligned_cols=338 Identities=29% Similarity=0.417 Sum_probs=311.1
Q ss_pred ceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCC
Q 017815 17 DTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLD 96 (365)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~d 96 (365)
+++||.+..+.+.+.. .+|++||||+++.+.+.+++.+.|. + +. +.+++++|++|++++++++++++++++++
T Consensus 3 ~V~~G~g~l~~l~~~~-~~r~lIVtD~~v~~l~~~~l~~~L~--~--~~--~~~~~~~e~~k~l~~v~~~~~~~~~~~~~ 75 (346)
T cd08196 3 KVVFGDSLLDSSTIQP-LENDVFIVDANVAELYRDRLDLPLD--A--AP--VIAIDATEENKSLEAVSSVIESLRQNGAR 75 (346)
T ss_pred EEEEcCChHHHHHHhh-CCeEEEEECccHHHHHHHHHHHHhc--C--Ce--EEEeCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 6788988866665554 4899999999999999999999886 3 33 45789999999999999999999999999
Q ss_pred CcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhhCCCC
Q 017815 97 RRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLP 176 (365)
Q Consensus 97 r~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~~tlP 176 (365)
|+|+||||||||++|+|||+|++|++|+||+.||||++|++||++++++++|....||++|.|++|+.||+||+++.|+|
T Consensus 76 r~d~iIaiGGGsv~D~ak~vA~~~~rgi~~i~iPTTlla~vds~ig~k~~vn~~~~Kn~ig~f~~P~~viiD~~~l~tlp 155 (346)
T cd08196 76 RNTHLVAIGGGIIQDVTTFVASIYMRGVSWSFVPTTLLAQVDSCIGSKSSINVGPYKNLVGNFYPPREIYIDPPFLSTLD 155 (346)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHcCCCeEEecccHHHhhhccccccceecCCCCCcccccCCCCCEEEEchHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhHHHHhh
Q 017815 177 DRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIE 256 (365)
Q Consensus 177 ~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~~Hale 256 (365)
.+++++|++|++|++++.|.++|++++.+.+.+. .+.+.+.+++.+++..|.+++++|+++.|+|..+||||||+||+|
T Consensus 156 ~~~~~~G~aEiiK~~~i~~~~~f~~l~~~~~~~~-~~~~~~~~~i~~s~~~K~~vv~~D~~e~g~R~~Ln~GHt~gHAlE 234 (346)
T cd08196 156 EKEIYSGLGEALKICYARGPDVFARYLQLYPVLF-TEHEALSRIIRSSLAIKKWFIEIDEFDQGERLLLNYGHTFGHALE 234 (346)
T ss_pred HHHHHhhHHHHHHHHHhCCHHHHHHHHhhhhhhc-CCHHHHHHHHHHHHHHHHHHhhhCccccCccHHHhccchhhHHHH
Confidence 9999999999999999999999999987655443 456678899999999999999999999999999999999999999
Q ss_pred hccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHhcccccCCeEE
Q 017815 257 TGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAP---PDTMTVEMFKSIMAVDKKVADGLLR 333 (365)
Q Consensus 257 ~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~---~~~i~~~~~~~~l~~dkk~~~~~~~ 333 (365)
....+ .++|||+||+||.+.++++.++|.++.+..+++.++++++|+|+.. +..++.++++++|+.|||+++++++
T Consensus 235 ~~~~~-~~~HGeaVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp~~~~~~~~~~~~~~~~~~l~~dkk~~~~~~~ 313 (346)
T cd08196 235 SATNF-AIPHGIAVGLGMLMANTIAVLAGGTMGLHSQELHEVLKKILLPIQEIADLAHIDADTLLAAFAKDKKHSGTQLR 313 (346)
T ss_pred ccCCC-CCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHhhCccCCeEE
Confidence 98766 6899999999999999999999999999999999999999999876 1226899999999999999999999
Q ss_pred EEeeCCCCcceEEccCCCHHHHHHHHHHHhc
Q 017815 334 LILLKGPLGNCVFTGDYDRKALDDTLYAFCK 364 (365)
Q Consensus 334 ~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~ 364 (365)
|+||++ +|++.+..+++.+++++.+.++.+
T Consensus 314 ~vL~~~-iG~~~~~~~~~~~~~~~~~~~~~~ 343 (346)
T cd08196 314 LILPDA-EGGLFKYVDPKDDEFRALIQEYFE 343 (346)
T ss_pred EEEEcc-CCceEEeCCCChHHHHHHHHHHHH
Confidence 999999 999999889999999999988754
No 8
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=100.00 E-value=4.6e-65 Score=492.25 Aligned_cols=335 Identities=37% Similarity=0.594 Sum_probs=307.0
Q ss_pred ceeeecccchh----hhhccCCceEEEEEccCchHHHHHHHHHHHhh-CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017815 17 DTLLLISNNCL----YYRHVQGKKVLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAI 91 (365)
Q Consensus 17 ~~~~~~~~~~~----l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~-~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~ 91 (365)
+++||.+..+. ++.+ +.+|++||+|+++.+.+.+++.+.|+. .+ ++ +++++++|++|+++++++++++++
T Consensus 3 ~v~~G~g~l~~l~~~~~~~-~~~k~livtd~~v~~~~~~~v~~~L~~~~~--~~--~~~~~~~e~~k~~~~v~~~~~~~~ 77 (344)
T cd08169 3 NVAFGEHVLESVESYTTRD-LFDQYFFISDSGVADLIAHYIAEYLSKILP--VH--ILVIEGGEEYKTFETVTRILERAI 77 (344)
T ss_pred cEEEcCChHHHHHHHHHhc-CCCeEEEEECccHHHHHHHHHHHHHHhhcC--ce--EEEeCCCCCCCCHHHHHHHHHHHH
Confidence 56788776443 4444 258999999999999999999999987 55 44 466899999999999999999999
Q ss_pred HcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhh
Q 017815 92 ESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDT 171 (365)
Q Consensus 92 ~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l 171 (365)
+++.+|.|+|||||||+++|+|||+|+.|++|+|+|+||||++|++||++|++++++....||..+.++.|+.||+||++
T Consensus 78 ~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~VPTTlla~~ds~~g~k~~i~~~~~kn~~g~~~~P~~viiDp~~ 157 (344)
T cd08169 78 ALGANRRTAIVAVGGGATGDVAGFVASTLFRGIAFIRVPTTLLAQSDSGVGGKTGINLKGGKNLLGTFYPPRAVFLDLRF 157 (344)
T ss_pred HcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCcEEEecCCcccccccCccceEeEecCCCceeecccCCCCEEEEcHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhH
Q 017815 172 LNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTF 251 (365)
Q Consensus 172 ~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~ 251 (365)
+.|+|++++++|++|++||+++.|+++|++++.+..++.....+.+.+.+.+++..|.+++..|+++.|+|..+||||++
T Consensus 158 l~tlP~~~~~~G~~e~ik~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~k~~~v~~d~~e~g~r~~ln~GHt~ 237 (344)
T cd08169 158 LKTLPPRQILSGVAEIVKVALIKDAELFELLEDHLNSLNVYSLAVLEEYINRCISIKMSVIVGDEKESGIRRILNYGHTF 237 (344)
T ss_pred HhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhhcCHHHHHHHHHHHHHHHhhhccCCcccccchhhhhccchh
Confidence 99999999999999999999999999999998766666555667788999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccC-C
Q 017815 252 GHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVAD-G 330 (365)
Q Consensus 252 ~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~-~ 330 (365)
+|++|....+ .++||++||+||.++++++.++|+++++.++++.++++++|+|++++..++.++++++|+.|||+++ +
T Consensus 238 gHalE~~~~~-~~~HGeaVa~Gm~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~~~~~~~~~~~~~~~~~dkk~~~~~ 316 (344)
T cd08169 238 GHAIELATDF-GIPHGEAVAVGMIYANVIANRLGLLSEHDYSRIYNLLKKLGLPQDHPLKLDPDSLYHYLLHDKKNGYEG 316 (344)
T ss_pred hHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCCCCCHHHHHHHHHHhhcccCCC
Confidence 9999987655 6899999999999999999999999999999999999999999998645789999999999999998 9
Q ss_pred eEEEEeeCCCCcceEEccCCCHHHHHHH
Q 017815 331 LLRLILLKGPLGNCVFTGDYDRKALDDT 358 (365)
Q Consensus 331 ~~~~~l~~~~~g~~~~~~~~~~~~l~~~ 358 (365)
+++|+||++ ||++.+..++++++++++
T Consensus 317 ~~~~vl~~~-iG~~~~~~~v~~~~~~~a 343 (344)
T cd08169 317 NLGMILLKG-VGKPAVVNVVDKTLIKEA 343 (344)
T ss_pred cEEEEEEcC-CcceEEeCCCCHHHHHhh
Confidence 999999999 999999889999998865
No 9
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=100.00 E-value=1.6e-64 Score=490.19 Aligned_cols=340 Identities=46% Similarity=0.717 Sum_probs=310.2
Q ss_pred ceeeecccchhhhhcc-CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCC
Q 017815 17 DTLLLISNNCLYYRHV-QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRL 95 (365)
Q Consensus 17 ~~~~~~~~~~~l~~~~-~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~ 95 (365)
++.||.+..+.+.++. .++|++||+|+++++.+.+++.+.|++.| +++.++.++++|++|+++++++++++++++++
T Consensus 2 ~v~~G~g~l~~l~~~l~~~~~~livtd~~~~~~~~~~v~~~L~~~g--~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~ 79 (344)
T TIGR01357 2 PVHVGEGLLDQLVEELAEPSKLVIITDETVADLYADKLLEALQALG--YNVLKLTVPDGEESKSLETVQRLYDQLLEAGL 79 (344)
T ss_pred eEEEeCChHHHHHHHhhcCCeEEEEECCchHHHHHHHHHHHHHhcC--CceeEEEeCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4678887755544422 24899999999999989999999999988 77666678999999999999999999999999
Q ss_pred CCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhhCCC
Q 017815 96 DRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTL 175 (365)
Q Consensus 96 dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~~tl 175 (365)
+|.|+||||||||++|+||++|+.+.+++|+++||||++|++|++++++++++.+..||.++.++.|+.||+||+++.++
T Consensus 80 ~r~d~IIavGGGsv~D~aK~iA~~~~~~~p~i~VPTT~~a~~ds~~~~k~~i~~~~~kn~~~~~~~P~~viiDp~l~~tl 159 (344)
T TIGR01357 80 DRSSTIIALGGGVVGDLAGFVAATYMRGIRFIQVPTTLLAMVDSSVGGKTGINFPGGKNLIGTFYQPKAVLIDPDFLKTL 159 (344)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHHccCCCEEEecCchhheeccccCcceeEeCCCCceEEeeccCCceEEEcHHHHhhC
Confidence 99999999999999999999999999999999999998889999999999999888899999999999999999999999
Q ss_pred CHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcC-CHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhHHHH
Q 017815 176 PDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-DPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHA 254 (365)
Q Consensus 176 P~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~~Ha 254 (365)
|++++++|++|++||+++.||.+|++++.+..++... ..+.+.+++.+++..+.+++..|+++.|+|..+++||+|+|+
T Consensus 160 P~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~i~~k~~~~~~d~~e~~~r~~l~~GHt~~Ha 239 (344)
T TIGR01357 160 PDRELRSGMAEVIKHGLIADAELFDELESNDKLVLRLQELEHLEELIKRSIEVKASIVAEDEKESGLRAILNFGHTIGHA 239 (344)
T ss_pred CHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhccccHHHHHHHHHHHHHHHHHHhccCCCcccchHHhhcchhHHHH
Confidence 9999999999999999999999999988755444443 367788999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCCeEEE
Q 017815 255 IETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRL 334 (365)
Q Consensus 255 le~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~~~~~ 334 (365)
||...+++.++||++||+||.+.+++++++|.++++.++++.++++++|+|+.+++.++.++++++|..|||++++++++
T Consensus 240 le~~~~~~~~~HG~avaig~~~~~~la~~~~~~~~~~~~~i~~~l~~~g~p~~~~~~~~~~~~~~~l~~dkk~~~~~~~~ 319 (344)
T TIGR01357 240 IEAEAGYGKIPHGEAVAIGMVCEAKLSERLGLLPAELIERLVQLLKRYGLPTDLPKDLDVDELLNAMLNDKKNSGGKIRF 319 (344)
T ss_pred HHhhcCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHhhhccCCcEEE
Confidence 99986564499999999999999999999998888889999999999999999986689999999999999999999999
Q ss_pred EeeCCCCcceEEccCCCHHHHHHHH
Q 017815 335 ILLKGPLGNCVFTGDYDRKALDDTL 359 (365)
Q Consensus 335 ~l~~~~~g~~~~~~~~~~~~l~~~~ 359 (365)
++|++ ||++.+..++++|+|.+++
T Consensus 320 ~l~~~-iG~~~~~~~v~~~~l~~~~ 343 (344)
T TIGR01357 320 VLLEE-IGKAALASEVPDEMVLELL 343 (344)
T ss_pred EEecC-CccEEEeCCCCHHHHHHHh
Confidence 99999 9999998889999998875
No 10
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=1.9e-64 Score=514.01 Aligned_cols=345 Identities=35% Similarity=0.538 Sum_probs=312.3
Q ss_pred cccceeeecccchhhhhcc--CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017815 14 GNSDTLLLISNNCLYYRHV--QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI 91 (365)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~--~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~ 91 (365)
.|.+++||.+.-+.+.++. .++++++|+|..+. .+.+++.+.|+..| +.+...+++++|.+|++++++++++++.
T Consensus 187 ~p~~v~iG~g~l~~l~~~l~~~g~k~~iV~d~~v~-~~~~~l~~~L~~~g--~~v~~~v~p~~E~~ksl~~v~~~~~~l~ 263 (542)
T PRK14021 187 EPYDVRIGEGAMNHLPQVLGPKPVKVALIHTQPVQ-RHSDRARTLLRQGG--YEVSDIVIPDAEAGKTIEVANGIWQRLG 263 (542)
T ss_pred CCceEEEcCChHHHHHHHHHhcCCeEEEEECccHH-HHHHHHHHHHHhCC--CceEEEEeCCCcccCCHHHHHHHHHHHH
Confidence 4678999988744433321 14688888888875 48899999999988 7766667899999999999999999999
Q ss_pred HcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhh
Q 017815 92 ESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDT 171 (365)
Q Consensus 92 ~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l 171 (365)
+++.+|.|+|||||||+++|+|||+|++|++|+|||+||||++|++||++++++++|.+.+||++|.|++|..|++|+++
T Consensus 264 ~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTTllA~vDss~ggkt~in~~~gkn~ig~f~~P~~V~iD~~~ 343 (542)
T PRK14021 264 NEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTSLLAMVDASTGGKTGINTPQGKNLVGSFYTPAGVLADTKT 343 (542)
T ss_pred hcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCChHHhhhccccCCceEEECCCCceeEeeecCCCEEEEeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC---------HHHHHHHHHHHHHhhHhhhhcchhhhccc
Q 017815 172 LNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD---------PRAFAYAIKRSCENKAEVVSLDEKESGLR 242 (365)
Q Consensus 172 ~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~---------~~~l~~~i~~~~~~~~~~v~~d~~~~g~r 242 (365)
+.|+|.+++++|++|++||+++.||++|++++.+...+...+ .+.+.+++.+|+..|.++++.|+++.|.|
T Consensus 344 l~tlP~r~~~aG~gE~iK~~~i~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~si~~K~~vv~~D~~e~g~r 423 (542)
T PRK14021 344 LATLPNDIFIEGLGEVAKSGFIRDPEILRILEDHAAELRAFDGSTFLGSPLEDVVAELIERTVKVKAYHVSSDLKEAGLR 423 (542)
T ss_pred HhhCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhHHHHhhhccccccccchHHHHHHHHHHHHHHHHHHhcCCCccccch
Confidence 999999999999999999999999999999987655443221 35678899999999999999999999999
Q ss_pred cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Q 017815 243 ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMA 322 (365)
Q Consensus 243 ~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~ 322 (365)
..|||||||+||||...++ +++|||+||+||.++++++.++|.++++..+++.++++++|+|+.+++ ++.+++++.|.
T Consensus 424 ~~Ln~GHT~gHaiE~~~~~-~~~HGeaVa~Gm~~~~~ls~~~g~~~~~~~~~i~~ll~~~~lp~~~~~-~~~~~~~~~~~ 501 (542)
T PRK14021 424 EFLNYGHTLGHAIEKLEHF-RWRHGNAVAVGMVYAAELAHLLGYIDQDLVDYHRSLLASLGLPTSWNG-GSFDDVLALMH 501 (542)
T ss_pred HHHhccchhhHHHHcccCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCC-CCHHHHHHHHH
Confidence 9999999999999998767 699999999999999999999999999999999999999999998875 47788999999
Q ss_pred hcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHHHhc
Q 017815 323 VDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 364 (365)
Q Consensus 323 ~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~ 364 (365)
.|||+++++++||||++ ||++.+..+++.+++.+++++.+|
T Consensus 502 ~dkK~~~~~i~~vl~~~-iG~~~~~~~v~~~~~~~~~~~~~~ 542 (542)
T PRK14021 502 RDKKARGNELRFVVLDE-IGHPVHLDNPPAEAVEEAFRRIQQ 542 (542)
T ss_pred HhcCccCCeEEEEEECC-CCCEEEeCCCCHHHHHHHHHHHhC
Confidence 99999999999999999 999999889999999999987664
No 11
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=100.00 E-value=8.2e-63 Score=477.68 Aligned_cols=336 Identities=33% Similarity=0.515 Sum_probs=303.8
Q ss_pred ceeeeccc----chhhhhc--cCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 17 DTLLLISN----NCLYYRH--VQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 17 ~~~~~~~~----~~~l~~~--~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
++++|.+. ++.+... ...+|++||+|+++.+.+.+++.+.|+..| +++..++++++|++|++++++++++++
T Consensus 3 ~i~~~~~~~~~~~~~~~~~~~~~~~~~lvVtd~~v~~~~~~~v~~~l~~~g--~~~~~~v~~~~e~~~s~~~v~~~~~~l 80 (354)
T cd08199 3 EVVLLDGLLDPSNPLLLDVYLEGSGRRFVVVDQNVDKLYGKKLREYFAHHN--IPLTILVLRAGEAAKTMDTVLKIVDAL 80 (354)
T ss_pred eEEEeCCccccchHHHHHhhccCCCeEEEEECccHHHHHHHHHHHHHHhcC--CceEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 35555554 3444443 236899999999999889999999999888 777777889999999999999999999
Q ss_pred HHcCCCCc-ceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEeh
Q 017815 91 IESRLDRR-CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDT 169 (365)
Q Consensus 91 ~~~~~dr~-~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~ 169 (365)
++.+++|+ |+|||||||+++|+|||+|++|++|+|+|+||||++|++||+++++++++.+..||.++.++.|..||+||
T Consensus 81 ~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~rg~p~i~VPTT~lA~vD~~~g~K~~i~~~~~kn~ig~~~~P~~viiD~ 160 (354)
T cd08199 81 DAFGISRRREPVLAIGGGVLTDVAGLAASLYRRGTPYVRIPTTLVGLIDAGVGIKTGVNFGGYKNRLGAYHPPTLTLLDR 160 (354)
T ss_pred HHcCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCCCEEEEcCccceeeecCCCCceEEeCCCCccccccCCCCCEEEEcH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcC-----C---HHHHHHHHHHHHHhhHhhhhcchhhhcc
Q 017815 170 DTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-----D---PRAFAYAIKRSCENKAEVVSLDEKESGL 241 (365)
Q Consensus 170 ~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~-----~---~~~l~~~i~~~~~~~~~~v~~d~~~~g~ 241 (365)
+++.++|++++++|++|++||+++.||.+|++++++..++... + .+.+.+++.+++..+..++.+|++++|+
T Consensus 161 ~~l~tlP~~~~~~G~~e~ik~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~i~~k~~vv~~d~~e~g~ 240 (354)
T cd08199 161 SFLATLPERHIRNGLAEIIKMAVIKDAELFELLEEHGPRLIETRFGGDDGELAAAADEILGRAIQGMLEELGPNLWESDL 240 (354)
T ss_pred HHHhhCCHHHHHhHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHhhcCccccCc
Confidence 9999999999999999999999999999999998766555432 1 2456778899999999999999999999
Q ss_pred ccccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 017815 242 RATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIM 321 (365)
Q Consensus 242 r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l 321 (365)
|..+|+|||++|++|....+ .++|||+||+||.++++++...|.++++.++++.++++++|+|++++. ++.++++++|
T Consensus 241 r~~ln~GHT~~halE~~~~~-~~~HGeaVa~Gm~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~~~~-~~~~~~~~~l 318 (354)
T cd08199 241 DRPVDYGHTFSPGLEMRALP-ELLHGEAVAIDMALSAVLAYRRGLISEEERDRILALMRRLGLPVWHPL-LDPDLLWAAL 318 (354)
T ss_pred hhhhccccchhHHHHhcCCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCC-CCHHHHHHHH
Confidence 99999999999999987656 789999999999999999999999899999999999999999999854 6899999999
Q ss_pred HhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHH
Q 017815 322 AVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDD 357 (365)
Q Consensus 322 ~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~ 357 (365)
++|||+|+++++|+||++ +|++.+..+++++++.+
T Consensus 319 ~~dkk~~~~~~~~vl~~~-ig~~~~~~~~~~~~~~~ 353 (354)
T cd08199 319 KDTVRHRDGLQRAPLPTG-IGECTFLNDVTEEELER 353 (354)
T ss_pred HhccCccCCeEEEEEECC-CCCEEEeCCCCHHHHHh
Confidence 999999999999999999 99999877999998865
No 12
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=100.00 E-value=3.9e-62 Score=451.23 Aligned_cols=259 Identities=51% Similarity=0.852 Sum_probs=236.1
Q ss_pred EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEe
Q 017815 69 VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGIN 148 (365)
Q Consensus 69 ~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~ 148 (365)
+.+++||++|++++++++++++.+.+++|+|+|||+|||+++|+++|+|++|+||+||+.||||++|++||++|+|++||
T Consensus 1 ~~ip~GE~~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~RGi~~i~vPTTLLa~vDssiGgK~~vN 80 (260)
T PF01761_consen 1 IVIPAGEESKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYMRGIPFIQVPTTLLAQVDSSIGGKTGVN 80 (260)
T ss_dssp EEE-SSGGGSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEE
T ss_pred CCcCCCcccCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHccCCceEeccccHHHHHhcccCCCeeee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhc-CCHHHHHHHHHHHHHh
Q 017815 149 HRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMA-RDPRAFAYAIKRSCEN 227 (365)
Q Consensus 149 ~~~~k~~~~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~ 227 (365)
...+||++|.||+|+.|++||+++.|+|++.+++|++|++||+++.|+++|++++++..++++ ++.+.+.+++.++++.
T Consensus 81 ~~~~KN~iG~f~~P~~V~iD~~~l~tL~~~e~~~G~aEiiK~a~i~d~~lf~~l~~~~~~~~~~~~~~~l~~~i~~si~~ 160 (260)
T PF01761_consen 81 FPGGKNLIGTFYQPEAVLIDPSFLKTLPPREIRSGLAEIIKYALIADPELFELLEDHAKDLLEERDPDALEEIIKRSIKI 160 (260)
T ss_dssp ETTEEEEEEEE---SEEEEEGGGGGGS-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTHCHHHHHHHHHHHH
T ss_pred CCCCCCcccccCCCceeEEcHHHHhhccHHHHHhCHHHHHHHHHHCCHHHHHHHHhhHHHHhcccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877766 4667889999999999
Q ss_pred hHhhhhcchhhhccccccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCC
Q 017815 228 KAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTA 307 (365)
Q Consensus 228 ~~~~v~~d~~~~g~r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~ 307 (365)
|.++++.|+++.|+|..|||||||+|+||..+++ .++||++||+||.++++++.++|.++++..+++.++++++|+|+.
T Consensus 161 K~~iv~~D~~E~g~R~~Ln~GHT~gHAlE~~~~~-~i~HGeAVa~Gm~~~a~ls~~~g~~~~~~~~~i~~ll~~~glp~~ 239 (260)
T PF01761_consen 161 KARIVEQDEFEKGLRRILNFGHTFGHALESLSGY-KISHGEAVAIGMVFAARLSVRLGLLDEDDVERIEELLEKLGLPTS 239 (260)
T ss_dssp HHHHHHHCTTSSSGGGGGGTTHHHHHHHHHHCTT-TS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTTTTTS
T ss_pred HHHHhccCcccccchHHhcccchhHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999877 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhccccc
Q 017815 308 PPDTMTVEMFKSIMAVDKKVA 328 (365)
Q Consensus 308 ~~~~i~~~~~~~~l~~dkk~~ 328 (365)
++..++.++++++|++|||+|
T Consensus 240 ~~~~~~~~~l~~~l~~DKK~r 260 (260)
T PF01761_consen 240 LPDIVDPDELIEALKHDKKNR 260 (260)
T ss_dssp CCTTS-HHHHHHHHTTCTTS-
T ss_pred CCCCCCHHHHHHHHHhCCCCC
Confidence 987679999999999999985
No 13
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=100.00 E-value=4e-60 Score=463.20 Aligned_cols=347 Identities=33% Similarity=0.451 Sum_probs=306.2
Q ss_pred ccccceeeecccchh----hhhc------cCCceEEEEEccCchHH---HHHHHHHHHhhCCCCceE----EEEEeCCCC
Q 017815 13 FGNSDTLLLISNNCL----YYRH------VQGKKVLVVTNNTVAPL---YLDKVTDALTRGNPNVSV----ENVILPDGE 75 (365)
Q Consensus 13 ~~~~~~~~~~~~~~~----l~~~------~~~~~~livtd~~~~~~---~~~~v~~~L~~~g~~i~v----~~~~~~~~e 75 (365)
-.+-+++++.+..+. +.+. ..++|++||||+++.+. +.+++.+.|++.| +++ ..+.+++||
T Consensus 11 ~~~y~i~i~~~~~~~~~~~~~~~~~~~~~~~~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g--~~~~~~~~~~~~~~ge 88 (389)
T PRK06203 11 TFEYPVYFTRDLFSPENPLLAEVLAADGEGKPKKVLVVIDSGVLRAHPDLLEQITAYFAAHA--DVLELVAEPLVVPGGE 88 (389)
T ss_pred CCceeEEEeCChhhhhHHHHHHhhhhccccCCCeEEEEECchHHHhhhhHHHHHHHHHHhcC--CceeeeeeEEEccCCc
Confidence 344567777776333 3322 12489999999999874 4688999998777 432 345678888
Q ss_pred CCCCH-HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcc
Q 017815 76 NYKNM-DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN 154 (365)
Q Consensus 76 ~~~~~-~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~ 154 (365)
..++. +++.++++.+++.++||.|+||||||||++|+|||+|+++++|+|+|+||||++|++||+++++.+++....||
T Consensus 89 ~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~~~rgip~I~IPTTlla~vda~~g~~~~v~~~~~kn 168 (389)
T PRK06203 89 AAKNDPALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAATAHRGVRLIRIPTTVLAQNDSGVGVKNGINAFGKKN 168 (389)
T ss_pred cCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcCCCccccCCCccchhheecCCCce
Confidence 87776 89999999999999999999999999999999999999999999999999999999999999999998877899
Q ss_pred eeeccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhh-
Q 017815 155 LIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVS- 233 (365)
Q Consensus 155 ~~~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~- 233 (365)
.++.++.|++||+||+++.|+|++++++|++|++||+++.|+.+|++++.+...+.+.+.+.+.+++.+++..|.+++.
T Consensus 169 ~~g~~~~P~~vi~Dp~~l~tlP~~~~~~G~~e~iK~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~k~~~v~~ 248 (389)
T PRK06203 169 FLGTFAPPYAVINDFAFLTTLPDRDWRAGLAEAVKVALIKDAAFFDWLEAHAAALAARDPEAMEELIYRCAELHLEHIAG 248 (389)
T ss_pred eeccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhhcCHHHHHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999998877767666777788999999999999997
Q ss_pred -cchhhhccccccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-
Q 017815 234 -LDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT- 311 (365)
Q Consensus 234 -~d~~~~g~r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~- 311 (365)
.|+++.|.|+.+|+||+++|++|....| +++||++||+||++.++++.+.|.++++..+++.++++++|+|+..+..
T Consensus 249 ~~d~~e~g~r~~Ln~gHt~gHAlE~~~~~-~i~HGeAVAiGm~~~~~ls~~~g~~~~~~~~ri~~l~~~lglp~~~~~~~ 327 (389)
T PRK06203 249 GGDPFEFGSSRPLDFGHWSAHKLEQLTNY-ALRHGEAVAIGIALDSLYSYLLGLLSEAEAQRILALLRALGFPLYHPALA 327 (389)
T ss_pred CCCccccCCcCccccchhhhhhhhhcCCC-CCCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccccccC
Confidence 9999999999999999999999996656 7999999999999999999999999999999999999999999877543
Q ss_pred CC---HHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHHHh
Q 017815 312 MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 363 (365)
Q Consensus 312 i~---~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~ 363 (365)
.+ .+++++.|+.+||+++++++|+||++ ||++.+..+++++++.+++.+..
T Consensus 328 ~~e~~~~~li~~~~~dkK~~~~~i~~vl~~~-iG~~~~~~~v~~~~l~~~~~~~~ 381 (389)
T PRK06203 328 TRDSKGRELLKGLEEFREHLGGRLTITLLTG-IGRGIEVHEIDLDLLRQAIARLA 381 (389)
T ss_pred cccchHHHHHHHHHHHhhhcCCeEEEEEEcC-CCcEEEeCCCCHHHHHHHHHHHH
Confidence 22 36899999999999999999999998 99999988999999999996554
No 14
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=1.7e-60 Score=477.79 Aligned_cols=298 Identities=30% Similarity=0.492 Sum_probs=274.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.|++||+|+++.+++.+.+.. ..++++++|++|++++++++++++.+++++|+|+|||+|||+++|+||
T Consensus 186 ~~~~ii~d~~v~~ly~~~l~~-----------~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~ag 254 (488)
T PRK13951 186 NEELVFTTERVEKIYGRYLPE-----------NRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTG 254 (488)
T ss_pred CeEEEEECCcHHHHHHHhhcc-----------cEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHH
Confidence 489999999999998886542 246789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHcc
Q 017815 115 YAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIR 194 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~ 194 (365)
|+|++|+||+||++||||++||+||++|+|++||...+||++|.||+|++||+||+++.|+|++++++|++|++||+++.
T Consensus 255 f~A~~y~RGi~~i~vPTTlla~vDssiggK~~vn~~~~KNliG~f~~P~~viiD~~~l~TLp~~~~~~G~aE~iK~~~~~ 334 (488)
T PRK13951 255 FVASTFKRGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILS 334 (488)
T ss_pred HHHHHHhcCCCeEecCccHHHHHhcCCCCCeeeeCCCCCceeecCCCCCEEEEchHHhcCCCHHHHHhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhHHHHhhhccCCCCCCcHHHHHHHH
Q 017815 195 DAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGM 274 (365)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~ 274 (365)
|..++++ .+...+.+.+.+.+.+++.+++..|.+++..|+.+.|+|..+|+|||++|+||.. + +++||++||+||
T Consensus 335 ~~~~~~~--~~~~~~~~~~~~~~~~~i~~si~~k~~vv~~D~~e~~~R~~LN~GHTigHalE~~--~-~i~HG~AVa~gm 409 (488)
T PRK13951 335 GRGVELF--DEPEKIEKRNLRVLSEMVKISVEEKARIVMEDPYDMGLRHALNLGHTLGHVYEML--E-GVPHGIAVAWGI 409 (488)
T ss_pred ChhHHhh--hChhhhhcccHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHhccchHHHHHHhc--c-CCccHHHHHHHH
Confidence 9998877 3444455556677889999999999999999999999999999999999999987 3 589999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccC-CeEEEEeeCCCCcceEEccCCCH
Q 017815 275 VMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVAD-GLLRLILLKGPLGNCVFTGDYDR 352 (365)
Q Consensus 275 ~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~-~~~~~~l~~~~~g~~~~~~~~~~ 352 (365)
.++++++.++|+++++..+++.+++++++ |+.++. ++.+++++.|.+|||+++ ++++|++|++ ||++.+. ++++
T Consensus 410 ~~~~~~s~~~g~~~~~~~~~i~~~l~~~~-p~~~~~-~~~~~~~~~~~~dkK~~~~~~i~~vl~~~-iG~~~~~-~~~~ 484 (488)
T PRK13951 410 EKETMYLYRKGIVPKETMRWIVEKVKQIV-PIPVPS-VDVEKARNLILNDKKILKGSRVRLPYVKE-IGKIEFL-EVDP 484 (488)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CCCCCC-CCHHHHHHHHHHhcCcCCCCcEEEEEEcC-CCCeeEe-cccc
Confidence 99999999999999999999999999985 988765 588999999999999986 5999999999 9998776 5543
No 15
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3e-51 Score=397.66 Aligned_cols=319 Identities=21% Similarity=0.268 Sum_probs=258.1
Q ss_pred ccccccccceeeecccchh----hhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHH
Q 017815 9 KDRFFGNSDTLLLISNNCL----YYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLM 84 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~ 84 (365)
+..|+.|++++||.+..+. ++++..++|++||+|+++++.+.+++.+.|++.+ ++..+ ..++|++++++
T Consensus 5 ~~~~~~p~~i~~G~g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~---~~~~~----~~~~~t~~~v~ 77 (350)
T PRK00843 5 SHWIQLPRDVVVGHGVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAG---DVEVV----IVDEATMEEVE 77 (350)
T ss_pred ceEEeCCCeEEECCCHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcC---CeeEE----eCCCCCHHHHH
Confidence 4567889999999987444 4444324799999999999999999999998765 23223 23478999999
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccE
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQC 164 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~ 164 (365)
++++++++.++| +|||||||+++|+||++| +++|+|+|+||||+ ++||+++++++++.+ +||..+.++.|++
T Consensus 78 ~~~~~~~~~~~d---~IIaiGGGsv~D~ak~vA--~~rgip~I~IPTT~--~tds~~s~~a~i~~~-~~~~~~~~~~P~~ 149 (350)
T PRK00843 78 KVEEKAKDVNAG---FLIGVGGGKVIDVAKLAA--YRLGIPFISVPTAA--SHDGIASPRASIKGG-GKPVSVKAKPPLA 149 (350)
T ss_pred HHHHHhhccCCC---EEEEeCCchHHHHHHHHH--HhcCCCEEEeCCCc--cCCcccCCceEEEeC-CceeeecCCCCeE
Confidence 999999999887 999999999999999996 78999999999995 589999999999875 4677788899999
Q ss_pred EEEehhhhCCCCHHHHHhcHHHHH-HHHHccChhHHHHHHHh-hhhh---hcCCH-HH---HHHHHHHHHHhhHhhhhcc
Q 017815 165 VLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQN-MHKL---MARDP-RA---FAYAIKRSCENKAEVVSLD 235 (365)
Q Consensus 165 viiD~~l~~tlP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~-~~~~---~~~~~-~~---l~~~i~~~~~~~~~~v~~d 235 (365)
||+||+++.++|++++++|++|++ |++++.||.++++++.+ .+.. ++... +. ..+.+.+++..+.+++.+|
T Consensus 150 vivD~~~l~tlP~~~~~sg~~d~l~k~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~i~~~~~~i~~~~~~~~~~v~~~ 229 (350)
T PRK00843 150 VIADTEIIAKAPYRLLAAGCGDIISNYTAVKDWRLAHRLRGEYYSEYAAALSLMTAKMLIENADIIKPGLEESARLVVKA 229 (350)
T ss_pred EEEcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHH
Confidence 999999999999999999999999 88888899888776431 1111 11000 11 1145556666777888888
Q ss_pred hhhhcc--------ccccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCC
Q 017815 236 EKESGL--------RATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTA 307 (365)
Q Consensus 236 ~~~~g~--------r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~ 307 (365)
+.++|+ |..+|+||+++|+||....+ +++||++||+||++++.++. +..+++.++++++|+|++
T Consensus 230 ~~~~G~~~~~~g~~r~~l~~gHti~hale~~~~~-~~~HGeaVa~G~~~~~~l~~-------~~~~~i~~ll~~~glP~~ 301 (350)
T PRK00843 230 LISSGVAMSIAGSSRPASGSEHLFSHALDRLAPG-PALHGEQCGVGTIIMMYLHG-------GDWRKIRDALKKIGAPTT 301 (350)
T ss_pred HHHhHHHHhhcCCCCCcchHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHcC-------ccHHHHHHHHHHcCCCCC
Confidence 899888 67799999999999986543 68999999999999988752 347899999999999999
Q ss_pred CCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHH
Q 017815 308 PPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 360 (365)
Q Consensus 308 ~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~ 360 (365)
++++ ++.+++.+.|+.|||.|++|+++.-.. ..+++.+++++.
T Consensus 302 l~~l~~~~~~~~~~~~~dk~~r~~r~t~l~~~----------~~~~~~~~~~~~ 345 (350)
T PRK00843 302 AKELGIDDEYIIEALTIAHTIRPERYTILGDR----------GLTREAAEKAAR 345 (350)
T ss_pred HHHcCCCHHHHHHHHHHHhhcCcccEEeecCC----------CCCHHHHHHHHH
Confidence 9876 899999999999999999987764333 455666776654
No 16
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=100.00 E-value=2.3e-48 Score=374.95 Aligned_cols=297 Identities=17% Similarity=0.231 Sum_probs=237.1
Q ss_pred ccceeeecccch----hhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNC----LYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~~----~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++++||.+..+ .++++...+|++||||+++.+.+.+++.+.|+++| +++.+ ...++++||++++++++++++
T Consensus 1 p~~i~~G~g~l~~l~~~~~~~~~~~kvlivtd~~~~~~~~~~i~~~L~~~~--~~~~i-~~~~~~~~p~~~~v~~~~~~~ 77 (332)
T cd08549 1 PKEIVVGEGAINDIGPIINKIGVNSKIMIVCGNNTYKVAGKEIIERLESNN--FTKEV-LERDSLLIPDEYELGEVLIKL 77 (332)
T ss_pred CcEEEECCChHHHHHHHHHHcCCCCcEEEEECCcHHHHHHHHHHHHHHHcC--CeEEE-EecCCCCCCCHHHHHHHHHHh
Confidence 678899988744 44444323899999999999988999999999888 66543 234678899999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehh
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 170 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~ 170 (365)
++ ++| +|||||||+++|+|||+| +++++|+|+||||+ ++|++.+...++. .++||..+.++.|.+||+||+
T Consensus 78 ~~-~~d---~IIaiGGGsv~D~aK~iA--~~~gip~I~VPTT~--~~~g~~s~v~~~~-~~~k~~~~~~~~P~~viiDp~ 148 (332)
T cd08549 78 DK-DTE---FLLGIGSGTIIDLVKFVS--FKVGKPFISVPTAP--SMDGYASSVASLI-VNGKKRSVSAVYPEIIVGDID 148 (332)
T ss_pred hc-CCC---EEEEECCcHHHHHHHHHH--HHcCCCEEEeCCCc--ccCcccCCceEEe-eCCceEeecCCCCcEEEEcHH
Confidence 87 666 999999999999999996 78999999999996 3343333333443 356787888999999999999
Q ss_pred hhCCCCHHHHHhcHHHHH-HHHHccChhHHHHHHHhhhhhhcCCH-HHHHHHHHHHHHhhHhhhhcchhh----------
Q 017815 171 TLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKAEVVSLDEKE---------- 238 (365)
Q Consensus 171 l~~tlP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~~~~~~v~~d~~~---------- 238 (365)
++.++|++++++|++|++ |++.+.||.+++....+. ++... ..+.+.+.+++..+.+++..|+.+
T Consensus 149 ~l~tlP~~~~~ag~~D~l~k~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~l~~a~~~ 225 (332)
T cd08549 149 IISQAPYEFITAGFGDVISNYTALADWYISSVITGET---YSDDIAAMVKESINKVIDASTGILGRDEKSIKELVEALII 225 (332)
T ss_pred HHHhCCHHHHHHhHHHHHHhhhHHHHHHHHHHhcCcc---cCHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHH
Confidence 999999999999999999 778888888776553211 11111 223566777776666666666544
Q ss_pred hccccccCcc---------hhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCC
Q 017815 239 SGLRATLNLG---------HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPP 309 (365)
Q Consensus 239 ~g~r~~l~~g---------H~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~ 309 (365)
+|++. +++| |+|+|+||....+ +++||++||+||+++++++. +..++++++++++|+|++++
T Consensus 226 ~G~~~-~n~G~s~~~s~~~Hti~Hale~~~~~-~~~HGeaVaigm~~~~~l~~-------~~~~~i~~ll~~~glp~~~~ 296 (332)
T cd08549 226 NGIAM-LIAGNSRPASGAEHHLSHALDMREPE-PHLHGTQVGVTTIIISEIHH-------YTLDDIKKFLSKKGSLNRDL 296 (332)
T ss_pred hhHhh-eecCCCCCcchHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHcCCCCCHH
Confidence 78763 4544 9999999998655 68899999999999999985 26899999999999999998
Q ss_pred CC-CCHHHHHHHHHhcccccCCeEEEE
Q 017815 310 DT-MTVEMFKSIMAVDKKVADGLLRLI 335 (365)
Q Consensus 310 ~~-i~~~~~~~~l~~dkk~~~~~~~~~ 335 (365)
+. ++.++++++|..|||.|++|+++.
T Consensus 297 ~~~~~~~~~~~~~~~dkk~~~~r~t~l 323 (332)
T cd08549 297 NLIGVSEVLLYAMLNAHKIIPKRYTIL 323 (332)
T ss_pred HcCCCHHHHHHHHHHhhhcCCCceeee
Confidence 76 799999999999999999997763
No 17
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=100.00 E-value=1.6e-45 Score=354.47 Aligned_cols=324 Identities=21% Similarity=0.240 Sum_probs=256.1
Q ss_pred cccccccceeeecccchhhhhcc---CCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHH
Q 017815 10 DRFFGNSDTLLLISNNCLYYRHV---QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK 85 (365)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~ 85 (365)
..|+.|++++||.+..+.+.+.. +.+|+|||||+++.+. +.+++.+.|+..| +++ .+|++++++|+++++++
T Consensus 2 ~~~~~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~--i~~--~if~~v~p~P~~~~v~~ 77 (377)
T COG1454 2 NWFYLPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAG--IEY--EVFDEVEPEPTIETVEA 77 (377)
T ss_pred cccccCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcC--CeE--EEecCCCCCCCHHHHHH
Confidence 46788999999999977666643 2489999999998887 9999999999998 654 56899999999999999
Q ss_pred HHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcC----------------CcEEEeccccccccccccCCceEEec
Q 017815 86 VFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG----------------VSFIQIPTTVMAQVDSSVGGKTGINH 149 (365)
Q Consensus 86 ~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g----------------~p~i~IPTTl~A~~~s~~~~~~~i~~ 149 (365)
+++.++++++| .|||+||||+||+||.++..+..+ .|+|+|||| |||||++++.+++..
T Consensus 78 ~~~~~~~~~~D---~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT--aGTGSEvT~~aVitd 152 (377)
T COG1454 78 GAEVAREFGPD---TIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT--AGTGSEVTPFAVITD 152 (377)
T ss_pred HHHHHHhcCCC---EEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC--CcchhhhcCeEEEEe
Confidence 99999999999 999999999999999998876532 799999999 799999999999987
Q ss_pred CCC--cceeecc-CCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHH
Q 017815 150 RLG--KNLIGAF-YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSC 225 (365)
Q Consensus 150 ~~~--k~~~~~~-~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 225 (365)
+.. |..+... ..|+.+|+||+++.++|+.++++++.|+|.||+ |.|++...+..++.++.+ .+.+.+.+.+++
T Consensus 153 ~~~~~K~~i~~~~l~Pd~aI~Dp~lt~~~P~~ltA~TGmDALtHAi---EAy~s~~a~p~tD~~A~~ai~li~~~L~~a~ 229 (377)
T COG1454 153 EETGVKYAIADPELLPDVAILDPELTLGMPPSLTAATGMDALTHAI---EAYVSPAANPITDALALEAIKLIFEYLPRAV 229 (377)
T ss_pred CCCcceeeccCcccCCCEEEEChHHhcCCChHhhhhhhHHHHHHHH---HHHHcCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 644 5555443 589999999999999999999999999999999 888876655556655544 255667888888
Q ss_pred HhhHhhh-----hcchhhhccc---cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HHHHcC
Q 017815 226 ENKAEVV-----SLDEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLG 285 (365)
Q Consensus 226 ~~~~~~v-----~~d~~~~g~r---~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~~~~g 285 (365)
.+..+.. ......+|+. ..+|+.|.++|+++.. | +++||.++|+.||..++ +++.+|
T Consensus 230 ~~g~d~eARe~m~~aa~lAGmAF~na~lG~~HalaH~lG~~--~-~~pHG~~nAillP~V~~fN~~~a~~r~a~iA~~lg 306 (377)
T COG1454 230 ADGDDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGAL--F-HIPHGLANAILLPYVIRFNAEAAPERYARIARALG 306 (377)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcchhHHHHHHhhcccccc--c-cCchHHHhhHhhHHHHHHhhhhhHHHHHHHHHHhC
Confidence 7643332 2235667775 2467779999999886 5 79999999999999765 455566
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHH
Q 017815 286 WI-----DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 359 (365)
Q Consensus 286 ~~-----~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~ 359 (365)
.- .+..++.+.+|.+++|+|.++.+. ++++++.+ +..+...+.. ...-| ..++.+++++.+
T Consensus 307 ~~~~~~~~~~~i~~i~~L~~~lgip~~L~d~Gv~~~~i~~-~a~~A~~d~~--~~~NP----------r~~t~ed~~~i~ 373 (377)
T COG1454 307 LPGEGDAADALIDALRELLERLGIPKRLRDLGVKEEDIDK-LAEDALADPC--TATNP----------RPPTREDIKEIY 373 (377)
T ss_pred CCCccchHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHH-HHHHHHhCcc--cCCCC----------CCCCHHHHHHHH
Confidence 53 145799999999999999999987 88887643 3333222110 01112 267788888888
Q ss_pred HH
Q 017815 360 YA 361 (365)
Q Consensus 360 ~~ 361 (365)
++
T Consensus 374 ~~ 375 (377)
T COG1454 374 EA 375 (377)
T ss_pred HH
Confidence 65
No 18
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=100.00 E-value=4e-44 Score=346.70 Aligned_cols=313 Identities=24% Similarity=0.297 Sum_probs=236.6
Q ss_pred ccceeeecccchhh----hhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++++||.+..+.+ ++..+.+|++||+|+++++.+.+++.+.|+++| ++ ..+ ..++|+.++++++++++
T Consensus 2 p~~i~~g~g~l~~l~~~l~~~~~~~~~liv~d~~~~~~~~~~v~~~l~~~~-~~--~~~----~~~~~~~~~v~~~~~~~ 74 (339)
T cd08173 2 PRDVVVGHGVLEKIPNVLRDLLLGGRVLVVTGPTTKSIAGKKVEALLEDEG-EV--DVV----IVEDATYEEVEKVESSA 74 (339)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCCeEEEEECCchHHHHHHHHHHHHHhcC-Ce--EEE----EeCCCCHHHHHHHHHHh
Confidence 67888998885444 322234899999999999989999999998875 33 223 23467999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehh
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 170 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~ 170 (365)
+++++| +||||||||++|+||++| +.+++|+|+|||| +++||+++..++++.+ ++|..+.++.|.+||+||+
T Consensus 75 ~~~~~d---~iIaiGGGs~~D~aK~~a--~~~~~p~i~iPTT--~~t~s~~s~~a~i~~~-~~k~~~~~~~P~~vi~Dp~ 146 (339)
T cd08173 75 RDIGAD---FVIGVGGGRVIDVAKVAA--YKLGIPFISVPTA--ASHDGIASPRASIKGN-GKPISIKAKPPLAVIADTG 146 (339)
T ss_pred hhcCCC---EEEEeCCchHHHHHHHHH--HhcCCCEEEecCc--ccCCcccCCceEEEeC-CceEEecCCCCeEEEEcHH
Confidence 998888 999999999999999996 7799999999999 5889999999999765 4566677789999999999
Q ss_pred hhCCCCHHHHHhcHHHHH-HHHHccChhHHHHHHHh-hhhhhcCCH-HHHHHHHHHHHHhh------Hhhhhcchhhhcc
Q 017815 171 TLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQN-MHKLMARDP-RAFAYAIKRSCENK------AEVVSLDEKESGL 241 (365)
Q Consensus 171 l~~tlP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~-~~~~~~~~~-~~l~~~i~~~~~~~------~~~v~~d~~~~g~ 241 (365)
++.++|++++++|++|++ |++...||.+++.++.. .+.+..... ..+..++..+...+ .+.+..+...+|+
T Consensus 147 l~~tlP~~~~~sg~~Dal~k~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~~~~~~r~l~~a~~~~G~ 226 (339)
T cd08173 147 IIAKAPRRLLAAGCGDIISNYTAVRDWRLAHRLKGEYYSEYAASLALMSAKMVIKNADEIKPGLEESVRVVVKALISSGV 226 (339)
T ss_pred HHHhCCHHHHHHhHHHHHhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHhhH
Confidence 999999999999999999 88888888887765431 111100000 11111111111100 1122223344554
Q ss_pred --------ccccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-C
Q 017815 242 --------RATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-M 312 (365)
Q Consensus 242 --------r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~-i 312 (365)
|+.+++||+++|+||.... .+++||++||+|++++..++. ..+++++++++++|+|++++++ +
T Consensus 227 ~~~~~g~~~~~~g~~H~~~hal~~~~~-~~~~HG~~Va~g~~v~~~l~~-------~~~~~i~~l~~~lglp~~l~~lgi 298 (339)
T cd08173 227 AMSIAGSSRPASGSEHLFSHALDRLAP-GKALHGEQCGVGTIIMMYLHG-------GNWRRIRDALKKVGAPTTAKELGI 298 (339)
T ss_pred HHhhcCCCCCCchHHHHHHHHHHHhCC-CCCccHhHHHHHHHHHHHHcC-------ccHHHHHHHHHHCCCCCCHHHcCC
Confidence 2346789999999998643 368999999999988776642 2578999999999999999877 8
Q ss_pred CHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHH
Q 017815 313 TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 360 (365)
Q Consensus 313 ~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~ 360 (365)
+.|++.+.+..+||+++++.....|. +++++.+++.++
T Consensus 299 ~~~~~~~~~~~~~k~~~~~~~~~~p~----------~~~~~~~~~~~~ 336 (339)
T cd08173 299 DDEIVIEALTIAHKIRPERYTILGEV----------GLTREAAEKAAE 336 (339)
T ss_pred CHHHHHHHHHHHHhcCCcceEeecCC----------CCCHHHHHHHHH
Confidence 99999999999999987775554443 567888887764
No 19
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=100.00 E-value=1.2e-43 Score=342.60 Aligned_cols=286 Identities=24% Similarity=0.310 Sum_probs=215.4
Q ss_pred ccceeeecccchhh----hhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++++||.+..+.+ +++ +.+|++||+|+++.+.+.+++.+.|++. +++ .++...+++|++++++++++++
T Consensus 1 p~~i~~G~g~l~~l~~~~~~~-g~~~~liv~~~~~~~~~~~~v~~~l~~~---~~~--~~~~~~~~~p~~~~v~~~~~~~ 74 (332)
T cd07766 1 PTRIVFGEGAIEKIGEEIKRG-GFDRALVVSDEGVVKGVGEKVADSLKKL---IAV--HIFDGVGPNPTFEEVKEAVERA 74 (332)
T ss_pred CCeEEECcCHHHHHHHHHHhc-CCCeEEEEeCCchhhhHHHHHHHHHHhc---CcE--EEeCCcCCCcCHHHHHHHHHHH
Confidence 67889998875444 333 2589999999999888899999999864 233 3455667789999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccC--CccEEEEe
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY--QPQCVLVD 168 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~--~P~~viiD 168 (365)
++.++| +||||||||++|+||++|..+.+++|+|+|||| +++||+++++++++.+. +...+.++ .|+++|+|
T Consensus 75 ~~~~~d---~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt--~~tgse~t~~avi~~~~-~~K~~~~~~~~P~~vi~D 148 (332)
T cd07766 75 RAAEVD---AVIAVGGGSTLDTAKAVAALLNRGLPIIIVPTT--AATGSEVSPKAVITDKE-GGKTGFFYPDNPDVVFVD 148 (332)
T ss_pred HhcCcC---EEEEeCCchHHHHHHHHHHHhcCCCCEEEEeCC--CchhhccCCeEEEEeCC-CceEEeccCCccCEEEEC
Confidence 998888 999999999999999999988889999999999 57899999999999874 33344455 89999999
Q ss_pred hhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHH-----hhHhhhhcchhhhcc-
Q 017815 169 TDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCE-----NKAEVVSLDEKESGL- 241 (365)
Q Consensus 169 ~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~-----~~~~~v~~d~~~~g~- 241 (365)
|+++.++|++++++|++|+++|++ +.++....+..++.++.. .+.+.+.+.+++. .+.+++. ....+|+
T Consensus 149 p~l~~t~P~~~~~~g~~Dal~h~~---E~~~~~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~ar~~l~~-as~~ag~~ 224 (332)
T cd07766 149 TDITKGLPPRQVASGGVDALSHAL---EAYSTKKSWPIADALAEKALETIEEDLPKAIEPGDYDALEKVVW-AATLAGNG 224 (332)
T ss_pred hhhhhCCCHHHHHHHHHHHHHHHH---HHHHCCCCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999999 554422211111111111 1122233333321 1111111 1222232
Q ss_pred -----ccccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-CCHH
Q 017815 242 -----RATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-MTVE 315 (365)
Q Consensus 242 -----r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~-i~~~ 315 (365)
|..+|++|+++|+|+.. + +++||++||++|+.+++++...+...++.++++.++++++|+|+++.+. ++.+
T Consensus 225 ~~~~~~~~~~~~H~i~h~l~~~--~-~i~HG~ava~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~l~e~g~~~~ 301 (332)
T cd07766 225 LFAAKSGGLGAAHAIGHALTAL--E-GIPHGEAVAVGLPAVLKVANDMNPEIEHAIEAVFKFLEDLGAPTDLADLGVSKE 301 (332)
T ss_pred HcCCCcccchHhHHhhCHHhhC--c-CCChHHHHHHHHHHHHHHhhhcCHhHHHHHHHHHHHHHHCCCCCCHHHcCCCHH
Confidence 34678899999999987 4 7999999999999999988765433345799999999999999999887 7776
Q ss_pred HHHH
Q 017815 316 MFKS 319 (365)
Q Consensus 316 ~~~~ 319 (365)
++.+
T Consensus 302 ~~~~ 305 (332)
T cd07766 302 DIDK 305 (332)
T ss_pred HHHH
Confidence 6643
No 20
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=100.00 E-value=8.5e-44 Score=343.40 Aligned_cols=306 Identities=18% Similarity=0.162 Sum_probs=222.2
Q ss_pred ccceeeecccchhhhhcc-----CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLYYRHV-----QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 89 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~-----~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~ 89 (365)
|++++||.+..+.+.++. +++|++||+|+++ .+++.+.|++.+ + ..+..+. .|+.++++++.+.
T Consensus 1 ~~~i~~G~g~l~~l~~~l~~~~~~~~r~livtd~~~----~~~~~~~L~~~~--~-~~~~~~~----~~~~~~~~~i~~~ 69 (331)
T cd08174 1 PLVLDIGEGAIARLGELLSDRNPNFGRVAVVSGPGV----GEQVAESLKTSF--S-AEVEAVE----EVSNSDAEEIGAR 69 (331)
T ss_pred CcEEEECcCHHHHHHHHHHHHHhcCCceEEEECCcH----HHHHHHHHHhcc--C-ceEEEec----CCCccCHHHHHHH
Confidence 788899988744443321 2589999999997 556677777666 4 1223332 2345566666666
Q ss_pred HHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEeh
Q 017815 90 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDT 169 (365)
Q Consensus 90 ~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~ 169 (365)
+++.+ |.|+|||||||+++|+||++|+ ++++|+|+|||| +++||++++.++++.+++|+..+.+ .|++||+||
T Consensus 70 ~~~~~--~~d~iIaiGGGsv~D~aK~vA~--~~~~p~i~vPTt--~~tgs~~s~~a~i~~~~~k~~~~~~-~P~~vi~D~ 142 (331)
T cd08174 70 ARSIP--NVDAVVGIGGGKVIDVAKYAAF--LRGIPLSVPTTN--LNDDGIASPVAVLTDEGGKRSSLAA-IPIGVVIDL 142 (331)
T ss_pred HHhcc--CCCEEEEeCCcHHHHHHHHHHh--hcCCCEEEecCc--cccCccccCceEEEeCCCeeeecCC-CCcEEEEcH
Confidence 66665 4559999999999999999975 789999999999 4789999999999988888888777 999999999
Q ss_pred hhhCCCCHHHHHhcHHHHH-HHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhh---------Hhhhhcchhhh
Q 017815 170 DTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENK---------AEVVSLDEKES 239 (365)
Q Consensus 170 ~l~~tlP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~---------~~~v~~d~~~~ 239 (365)
+++.++|++++++|++|+| |+..+.||.++...... ..+...+.+.+...+.+... .+.+......+
T Consensus 143 ~~l~tlP~~~~~aG~~Dalak~~~~~d~~~~~~~~~~---~~~~~~~~~a~~~~~~l~~~~~~~~d~~~~~~l~~a~~la 219 (331)
T cd08174 143 DVIRSAPRRLILAGIGDLISNITALADWELAHERGGE---PVDGLAALLSRAAAEAVLRHPGSITDPEFLKTLAEGLVLS 219 (331)
T ss_pred HHHHhCCHHHHHhhHHHHHHhcchHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999 55566677765432110 00101112222221111111 11111122334
Q ss_pred ccc--------cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC
Q 017815 240 GLR--------ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT 311 (365)
Q Consensus 240 g~r--------~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~ 311 (365)
|+. ..++++|+++|+|+....+ +++||++||+|++++++++.+ ..++++++++++|+|++++++
T Consensus 220 G~a~~~~g~~~~~~~~~H~i~h~l~~~~~~-~~~HG~~Va~g~~~~~~l~~~-------~~~~i~~~l~~~glp~~~~~~ 291 (331)
T cd08174 220 GIAMEIAGNSRPASGAEHLISHALDKLAPG-PALHGEQVGLATYFMSHLRGH-------HTERIQKLLTLTGFFLYVKEL 291 (331)
T ss_pred HHHHhccCCCCCCcHHHHHHHHHHHhcCCC-ccccHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHcCCCCCHHHc
Confidence 442 2347899999999987533 689999999999999988642 367999999999999999876
Q ss_pred -CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHH
Q 017815 312 -MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 359 (365)
Q Consensus 312 -i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~ 359 (365)
++.|++.++|..+||+|++ ++++|++. ..++|+..+++
T Consensus 292 g~~~~~~~~~~~~~~k~~~~--~~~~l~~~--------~~~~~~~~~~~ 330 (331)
T cd08174 292 GLDKEEFLEAVQLAPSTRPG--RYTILEHL--------GLSADELRDAY 330 (331)
T ss_pred CCCHHHHHHHHHhccccCCC--ceEeeCCC--------CCCHHHHHHhh
Confidence 8999999999999999887 47788873 77788877765
No 21
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=100.00 E-value=1.7e-43 Score=343.57 Aligned_cols=302 Identities=22% Similarity=0.328 Sum_probs=232.5
Q ss_pred cceeeecccch----hhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017815 16 SDTLLLISNNC----LYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI 91 (365)
Q Consensus 16 ~~~~~~~~~~~----~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~ 91 (365)
.+++||.+..+ +++++ +.+|++||+|+++.+...+++.+.|++.| +++.++.+..++++|+++++++++++++
T Consensus 2 ~~i~~G~g~l~~l~~~~~~~-~~~~~livtd~~~~~~~~~~v~~~l~~~~--i~~~~~~~~~~~~~pt~~~v~~~~~~~~ 78 (348)
T cd08175 2 DEIVIGEGALERLPEILKEF-GYKKALIVADENTYAAAGKKVEALLKRAG--VVVLLIVLPAGDLIADEKAVGRVLKELE 78 (348)
T ss_pred cEEEECCCHHHHHHHHHHhc-CCCcEEEEECCcHHHHHHHHHHHHHHHCC--CeeEEeecCCCcccCCHHHHHHHHHHhh
Confidence 46788888744 44444 25899999999999888899999999988 7776666677787899999999999998
Q ss_pred HcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhh
Q 017815 92 ESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDT 171 (365)
Q Consensus 92 ~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l 171 (365)
+ ++| +||||||||++|+||++| +++++|+|+|||| |+++++++..+++..++.|..+ .++.|+++|+||++
T Consensus 79 ~-~~d---~IIaIGGGs~~D~aK~vA--~~~~~p~i~IPTT--agt~g~~~~~~~v~~~g~K~~~-~~~~P~~viiDp~l 149 (348)
T cd08175 79 R-DTD---LIIAVGSGTINDITKYVS--YKTGIPYISVPTA--PSMDGYTSSGAPIILNGFKKTY-QAVAPIAIFADTDI 149 (348)
T ss_pred c-cCC---EEEEECCcHHHHHHHHHH--HhcCCCEEEecCc--ccccCccCCCceEecCCccccc-cCCCCeEEEEChHH
Confidence 7 666 999999999999999996 6789999999999 6888888877777665445555 45799999999999
Q ss_pred hCCCCHHHHHhcHHHHH-HHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhHhhhhcch----------hhh
Q 017815 172 LNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKAEVVSLDE----------KES 239 (365)
Q Consensus 172 ~~tlP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~v~~d~----------~~~ 239 (365)
+.++|++++++|++|++ ++....+|.+.+.+.. +.++.. .+.+.+.+.++++++.++...|+ ..+
T Consensus 150 ~~slP~~~~~sg~~Dale~~~~~~~~~~~~~~~~---~~~~~~a~~~i~~~l~~~~~~~~~~~~~d~~ar~~l~~a~~la 226 (348)
T cd08175 150 LANAPQRMIAAGFGDLLGKYTALADWKIAHILTG---EYYCETVWDLVEEALEKCLESADGLAARDEEAIKQLMEALILS 226 (348)
T ss_pred HHhCCHHHHHhhHHHHHHhcccHHhHHHHHHhcC---CcCcHHHHHHHHHHHHHHHhhHHhhhcCCHHHHHHHHHHHHHh
Confidence 99999999999999999 6554444444443211 011111 23456777888877766544442 223
Q ss_pred ccc--------cccCcchhHHHHhhhccC---CCCCCcHHHHHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHc
Q 017815 240 GLR--------ATLNLGHTFGHAIETGFG---YGQWLHGEAVAAGMVMAVDMSYRLGWI------DDSIVKRVHNILQQA 302 (365)
Q Consensus 240 g~r--------~~l~~gH~~~Hale~~~~---~~~~~HG~~vaig~~~~~~l~~~~g~~------~~~~~~~i~~ll~~l 302 (365)
|+. ..++.+|+++|+++.... +.+++||++||++|+.++++..+.+.. .++.+++++++++++
T Consensus 227 G~a~~~~g~s~~~~g~~Hal~h~l~~~~~~~~~~~~~HG~avai~lp~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l 306 (348)
T cd08175 227 GLAMQLVGSSRPASGAEHHLSHYWEMEFLNRGKKPLLHGEKVGVGTLIVAALYERLLKKDLEGLDKLKASAKIEELLKKV 306 (348)
T ss_pred hHHHHhcCCCCCCccHHHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHHHHHHhccchhhcccccHHHHHHHHHHC
Confidence 332 124578999999986432 237999999999999999987654321 235689999999999
Q ss_pred CCCCCCCCC-CCHHHHHHHHHhcccccCCeEE
Q 017815 303 KLPTAPPDT-MTVEMFKSIMAVDKKVADGLLR 333 (365)
Q Consensus 303 glp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~ 333 (365)
|+|+++++. ++.+++.+.+..++|+| +|++
T Consensus 307 glP~~l~~~gv~~~~l~~~~~~a~~~~-~~~~ 337 (348)
T cd08175 307 GAPTHPEEIGIDKELFRKSLILAKEIR-DRYT 337 (348)
T ss_pred CCCCCHHHcCCCHHHHHHHHHHHHHhh-hhhh
Confidence 999999887 89999999999999988 5644
No 22
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-43 Score=341.61 Aligned_cols=325 Identities=16% Similarity=0.148 Sum_probs=238.7
Q ss_pred cccccccccceeeecccc----hhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHH
Q 017815 8 YKDRFFGNSDTLLLISNN----CLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDT 82 (365)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~ 82 (365)
-.+.||+|++++||.+.. +.+++++ .+|++||+|+.+.+. +.+++.+.|++.| +++ .+|+++++||+.++
T Consensus 2 ~~~~~~~p~~i~~G~g~~~~l~~~~~~~g-~~~~livt~~~~~~~g~~~~v~~~L~~~~--i~~--~~f~~v~~np~~~~ 76 (383)
T PRK09860 2 AASTFFIPSVNVIGADSLTDAMNMMADYG-FTRTLIVTDNMLTKLGMAGDVQKALEERN--IFS--VIYDGTQPNPTTEN 76 (383)
T ss_pred CccccccCCeEEECcCHHHHHHHHHHhcC-CCEEEEEcCcchhhCccHHHHHHHHHHcC--CeE--EEeCCCCCCcCHHH
Confidence 467899999999999984 4445552 489999999987665 7889999999888 553 56788999999999
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----------------hcCCcEEEeccccccccccccCCceE
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTG 146 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----------------~~g~p~i~IPTTl~A~~~s~~~~~~~ 146 (365)
++++++.++++++| +||||||||++|+||.+|..+ ...+|+|+|||| |+|||++++.++
T Consensus 77 v~~~~~~~~~~~~D---~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTT--agTGSE~t~~av 151 (383)
T PRK09860 77 VAAGLKLLKENNCD---SVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT--AGTASEMTRFCI 151 (383)
T ss_pred HHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCC--CcchhccCceEE
Confidence 99999999999999 999999999999999998643 235899999999 799999999999
Q ss_pred EecCCC--cceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHH
Q 017815 147 INHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIK 222 (365)
Q Consensus 147 i~~~~~--k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~ 222 (365)
++.+.. |..+. ....|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++.. .+.+.+.+.
T Consensus 152 i~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~s~P~~~ta~tg~DAL~Hai---E~y~s~~~~p~sd~~a~~ai~~i~~~l~ 228 (383)
T PRK09860 152 ITDEARHIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAI---EAYVSIAATPITDACALKAVTMIAENLP 228 (383)
T ss_pred EEecCCCceEEEECcCcccCEEEECcHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 986543 44333 34589999999999999999999999999999999 888765433333333222 123345555
Q ss_pred HHHHhhHhhhh-----cchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HHH
Q 017815 223 RSCENKAEVVS-----LDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSY 282 (365)
Q Consensus 223 ~~~~~~~~~v~-----~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~~ 282 (365)
+++.+..+..+ .....+|+.. .+|..|.++|+|+.. + +++||.++|+.+|..++ +++
T Consensus 229 ~a~~~~~d~~aR~~m~~as~laG~a~~~~g~g~~Hal~h~lg~~--~-~ipHG~~~ai~lP~vl~~n~~~~~~k~~~~a~ 305 (383)
T PRK09860 229 LAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGF--Y-NLPHGVCNAVLLPHVQVFNSKVAAARLRDCAA 305 (383)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHccccHHHHHHHhhHHhhC--c-CCCcHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 55544322211 1234456542 234457777777765 5 79999999999888765 344
Q ss_pred HcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCH
Q 017815 283 RLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDR 352 (365)
Q Consensus 283 ~~g~~----~-----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~ 352 (365)
.+|.. . ++.++++++|++++|+|+++.+. ++++++.+......+. ... .-.| ..+++
T Consensus 306 ~~g~~~~~~~~~~~a~~~i~~i~~l~~~lglP~~L~e~gv~~~~~~~ia~~a~~~--~~~-~~np----------~~~t~ 372 (383)
T PRK09860 306 AMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDFAVLATNALKD--ACG-FTNP----------IQATH 372 (383)
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC--ccc-CCCC----------CCCCH
Confidence 45542 1 24588899999999999999988 8888875443322211 110 0012 26678
Q ss_pred HHHHHHHHH
Q 017815 353 KALDDTLYA 361 (365)
Q Consensus 353 ~~l~~~~~~ 361 (365)
+++.+.+++
T Consensus 373 ~~i~~il~~ 381 (383)
T PRK09860 373 EEIVAIYRA 381 (383)
T ss_pred HHHHHHHHH
Confidence 888888765
No 23
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=100.00 E-value=1.9e-42 Score=340.43 Aligned_cols=326 Identities=16% Similarity=0.144 Sum_probs=239.0
Q ss_pred ccccccccceeeeccc----chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH
Q 017815 9 KDRFFGNSDTLLLISN----NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 83 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v 83 (365)
++.||+|++++||.+. ++.+++++ .++++||+|+.+.+. +.+++.+.|++.| +++ .+|+++++||+.+++
T Consensus 21 ~~~f~~P~~i~fG~g~~~~l~~~~~~~g-~~~~lvv~~~~~~~~g~~~~v~~~L~~~g--i~~--~~~~~v~~~P~~~~v 95 (395)
T PRK15454 21 VKTFSVPPVTLCGPGAVSSCGQQAQTRG-LKHLFVMADSFLHQAGMTAGLTRSLAVKG--IAM--TLWPCPVGEPCITDV 95 (395)
T ss_pred hceeecCCeEEECcCHHHHHHHHHHhcC-CCEEEEEcCcchhhCccHHHHHHHHHHcC--CeE--EEECCCCCCcCHHHH
Confidence 4679999999999998 44555553 589999999988765 7889999999988 654 466889999999999
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh----------------cCCcEEEeccccccccccccCCceEE
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGI 147 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~----------------~g~p~i~IPTTl~A~~~s~~~~~~~i 147 (365)
+++++.++++++| +||||||||++|+||++|..+. ..+|+|+|||| |+|||++++.+++
T Consensus 96 ~~~~~~~r~~~~D---~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt--aGTGSE~t~~avi 170 (395)
T PRK15454 96 CAAVAQLRESGCD---GVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT--AGTGSETTNVTVI 170 (395)
T ss_pred HHHHHHHHhcCcC---EEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC--CcchhhhCCeEEE
Confidence 9999999999999 9999999999999999987532 24799999999 7999999999999
Q ss_pred ecCC-C-ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHH
Q 017815 148 NHRL-G-KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKR 223 (365)
Q Consensus 148 ~~~~-~-k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~ 223 (365)
+.+. + |..+ +....|+++|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+.+
T Consensus 171 ~~~~~~~K~~~~~~~~~P~~ailDP~l~~~~P~~~ta~tg~DAl~Hai---E~y~s~~~np~td~~a~~ai~li~~~l~~ 247 (395)
T PRK15454 171 IDAVSGRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAI---EAYSALNATPFTDSLAIGAIAMIGKSLPK 247 (395)
T ss_pred EcCCCCeeEEeeCCcccCCEEEEChhhhccCCHHHHHHHHHHHHHHHH---HHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8754 2 4433 344589999999999999999999999999999999 887764433333333322 1233344555
Q ss_pred HHHhhHhhh-----hcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HHHH
Q 017815 224 SCENKAEVV-----SLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYR 283 (365)
Q Consensus 224 ~~~~~~~~v-----~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~~~ 283 (365)
++.+..+.. ......+|+.. .++..|.++|++... + +++||+++|+.+|..++ +++.
T Consensus 248 a~~~~~d~~AR~~m~~As~laG~a~~~~g~g~~Hal~h~lg~~--~-~ipHG~~~aillP~v~~~n~~~~~~k~~~la~~ 324 (395)
T PRK15454 248 AVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAA--L-HIPHGLANAMLLPTVMEFNRMVCRERFSQIGRA 324 (395)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHhcccchHHHhhhhhhccC--C-CCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 554322211 11234456541 233447777777654 5 79999999999998765 3444
Q ss_pred cCCC---CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHH
Q 017815 284 LGWI---DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 359 (365)
Q Consensus 284 ~g~~---~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~ 359 (365)
+|.. .++.++++++|++++|+|+++.+. ++++++.+..... .. +..+. ..| ..++++++.+.+
T Consensus 325 l~~~~~~~~~~i~~i~~l~~~lglP~~L~e~gv~~~~~~~ia~~a-~~-~~~~~-~nP----------~~~t~e~i~~il 391 (395)
T PRK15454 325 LRTKKSDDRDAINAVSELIAEVGIGKRLGDVGATSAHYGAWAQAA-LE-DICLR-SNP----------RTASLEQIVGLY 391 (395)
T ss_pred hCCCcccHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHH-Hh-ccccc-CCC----------CCCCHHHHHHHH
Confidence 5432 245788999999999999999988 8888874433322 11 11110 112 267889999888
Q ss_pred HHHh
Q 017815 360 YAFC 363 (365)
Q Consensus 360 ~~~~ 363 (365)
++-|
T Consensus 392 ~~~~ 395 (395)
T PRK15454 392 AAAQ 395 (395)
T ss_pred HhcC
Confidence 7643
No 24
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-41 Score=334.10 Aligned_cols=324 Identities=19% Similarity=0.203 Sum_probs=235.4
Q ss_pred ccccccccceeeecccchhh----hhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH
Q 017815 9 KDRFFGNSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 83 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v 83 (365)
+++||.|++++||.+..+.+ +++ +.+|++||+|+.+.+. +.+++.+.|++.| +++ .+|++++++|+.+++
T Consensus 2 ~~~~~~~~~i~~G~g~l~~l~~~~~~~-g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g--~~~--~~~~~v~~~p~~~~v 76 (382)
T PRK10624 2 ANRMILNETAYFGRGAIGALTDEVKRR-GFKKALIVTDKTLVKCGVVAKVTDVLDAAG--LAY--EIYDGVKPNPTIEVV 76 (382)
T ss_pred CccccCCCeEEECcCHHHHHHHHHHhc-CCCEEEEEeCcchhhCcchHHHHHHHHHCC--CeE--EEeCCCCCCcCHHHH
Confidence 57799999999999884444 444 2489999999998887 8999999999988 654 457889999999999
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh------------------hcCCcEEEeccccccccccccCCce
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSVGGKT 145 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~------------------~~g~p~i~IPTTl~A~~~s~~~~~~ 145 (365)
+++++.++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||+++..+
T Consensus 77 ~~~~~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT--agTGse~t~~a 151 (382)
T PRK10624 77 KEGVEVFKASGAD---YLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT--AGTAAEVTINY 151 (382)
T ss_pred HHHHHHHHhcCCC---EEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC--Cchhhhhccee
Confidence 9999999999999 999999999999999987543 246899999999 79999999999
Q ss_pred EEecCCCc--cee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHH
Q 017815 146 GINHRLGK--NLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAI 221 (365)
Q Consensus 146 ~i~~~~~k--~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i 221 (365)
+++.+..+ ..+ +.+..|+.+|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+
T Consensus 152 vi~~~~~~~k~~~~~~~~~P~~ailDp~l~~tlP~~~~a~~g~Dal~Hai---E~y~s~~~~p~sd~~a~~ai~~i~~~l 228 (382)
T PRK10624 152 VITDEEKRRKFVCVDPHDIPQVAFVDADMMDSMPPGLKAATGVDALTHAI---EGYITRGAWALTDMLHLKAIEIIAGAL 228 (382)
T ss_pred eeecCCCCeeEEeeCccccCCEEEEChHhhcCCCHHHHHHHHHhHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99876432 222 456789999999999999999999999999999999 777754333333333221 12233344
Q ss_pred HHHHHhhHh---hhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HHHH
Q 017815 222 KRSCENKAE---VVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYR 283 (365)
Q Consensus 222 ~~~~~~~~~---~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~~~ 283 (365)
.+++.+..+ .+......+|+.. .++..|.++|+++.. + +++||.++|+.+|..++ +++.
T Consensus 229 ~~~~~~~~~aR~~~~~as~laG~a~~~~g~g~~Hal~h~l~~~--~-~ipHG~~~ai~lp~vl~~~~~~~~~k~~~la~~ 305 (382)
T PRK10624 229 RGAVAGDKEAGEGMALGQYIAGMGFSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMEYNADFTGEKYRDIARA 305 (382)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHhhhHHhhC--C-CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444432111 1111244456541 223447777777664 5 79999999999887654 3344
Q ss_pred cCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHH
Q 017815 284 LGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRK 353 (365)
Q Consensus 284 ~g~~----~-----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~ 353 (365)
+|.. + ++.++++++|++++|+|+++.+. ++++++.+.....-+ +..+. ..| ..++++
T Consensus 306 ~g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~--~~~~~-~nP----------~~~t~~ 372 (382)
T PRK10624 306 MGVKVEGMSLEEARNAAVEAVKALNRDVGIPPHLRDVGVKEEDIPALAQAAFD--DVCTG-GNP----------REATLE 372 (382)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--CcCCC-CCC----------CCCCHH
Confidence 5542 1 23578899999999999999987 888887544332211 11100 012 267888
Q ss_pred HHHHHHHH
Q 017815 354 ALDDTLYA 361 (365)
Q Consensus 354 ~l~~~~~~ 361 (365)
++.+.+++
T Consensus 373 ~i~~i~~~ 380 (382)
T PRK10624 373 DIVELYKK 380 (382)
T ss_pred HHHHHHHH
Confidence 88888865
No 25
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=100.00 E-value=5.2e-42 Score=336.49 Aligned_cols=298 Identities=19% Similarity=0.228 Sum_probs=224.8
Q ss_pred ccccccccceeeecccchh----hhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH
Q 017815 9 KDRFFGNSDTLLLISNNCL----YYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 83 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v 83 (365)
+++|+.|++++||.+..+. +++++ .+|++||+|+++.+. +.+++.+.|++.| +++ .+|+++++||+.+++
T Consensus 1 ~~~~~~p~~i~fG~g~l~~l~~~l~~~g-~~r~lvvt~~~~~~~g~~~~v~~~L~~~~--i~~--~~~~~v~~~p~~~~v 75 (379)
T TIGR02638 1 SNRLILNETSYFGAGAIEDIVDEVKRRG-FKKALVVTDKDLIKFGVADKVTDLLDEAG--IAY--ELFDEVKPNPTITVV 75 (379)
T ss_pred CCcccCCCeEEECcCHHHHHHHHHHhcC-CCEEEEEcCcchhhccchHHHHHHHHHCC--CeE--EEECCCCCCcCHHHH
Confidence 4789999999999998444 44442 489999999998887 8999999999888 664 457889999999999
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh------------------hcCCcEEEeccccccccccccCCce
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSVGGKT 145 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~------------------~~g~p~i~IPTTl~A~~~s~~~~~~ 145 (365)
+++++.++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||+++..+
T Consensus 76 ~~~~~~~~~~~~D---~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT--agTGse~t~~a 150 (379)
T TIGR02638 76 KAGVAAFKASGAD---YLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT--AGTAAEVTINY 150 (379)
T ss_pred HHHHHHHHhcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC--CchhhhhCCEE
Confidence 9999999999998 999999999999999998642 245899999999 79999999999
Q ss_pred EEecCCC--ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHH
Q 017815 146 GINHRLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAI 221 (365)
Q Consensus 146 ~i~~~~~--k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i 221 (365)
+++.+.+ |..+ +.+..|+.+|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+
T Consensus 151 vi~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~a~t~~Dal~H~i---Ea~~s~~~~~~sd~~a~~a~~li~~~l 227 (379)
T TIGR02638 151 VITDEENKRKFVCVDPHDIPDVAVIDAEMMYSMPKSLTAATGMDALTHAI---EGYITKGAWELTDMLHLKAIEIIARWL 227 (379)
T ss_pred EEEECCCCeeEEEeCCCccccEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9987654 3333 345699999999999999999999999999999999 777764333333333222 12334445
Q ss_pred HHHHHhhHhhh-----hcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HH
Q 017815 222 KRSCENKAEVV-----SLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MS 281 (365)
Q Consensus 222 ~~~~~~~~~~v-----~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~ 281 (365)
.+++++..+.. ......+|+.. .+|..|.++|+|+.. + +++||.++|+.++..++ ++
T Consensus 228 ~~~~~~~~~~~aR~~l~~As~laG~a~~~~g~g~~Hal~~~l~~~--~-~i~HG~a~ai~lp~vl~~~~~~~~~~~~~la 304 (379)
T TIGR02638 228 RSAVEGGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMEFNAEFTGEKYREIA 304 (379)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhcC--c-CCChHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55544322211 11234455531 234457777777764 5 79999999999887664 33
Q ss_pred HHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHH
Q 017815 282 YRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMA 322 (365)
Q Consensus 282 ~~~g~~----~-----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~ 322 (365)
+.+|.. + ++.++++.+|++++|+|+++.+. ++++++.+...
T Consensus 305 ~~~g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~ 355 (379)
T TIGR02638 305 KAMGVKTEGMSDEEARDAAVEAVKTLSKRVGIPEGLSELGVKEEDIPALAE 355 (379)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHH
Confidence 444432 1 23578899999999999999987 88888754433
No 26
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=100.00 E-value=2.5e-41 Score=331.35 Aligned_cols=323 Identities=17% Similarity=0.187 Sum_probs=235.2
Q ss_pred ccccccceeeecccchhhhhccCCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHH
Q 017815 11 RFFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 88 (365)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~ 88 (365)
+||+|++++||.+.-+.+.++. ++|++||+|+++.+. +.+++.+.|++.| +++ .+|+++++||+.++++++++
T Consensus 1 ~~~~p~~i~~G~g~l~~l~~~~-~~r~livt~~~~~~~~g~~~~v~~~L~~~g--~~~--~~~~~v~~~p~~~~v~~~~~ 75 (375)
T cd08179 1 RFTLPRDIYFGKGSLEYLKTLK-GKKAFIVTGGGSMKKFGFLDKVEAYLKEAG--IEV--EVFEGVEPDPSVETVLKGAE 75 (375)
T ss_pred CccCCceEEECcCHHHHHHHhc-CCeEEEEeCchHHHhCChHHHHHHHHHHcC--CeE--EEeCCCCCCcCHHHHHHHHH
Confidence 5899999999999877777764 689999999987764 7799999999888 654 56788999999999999999
Q ss_pred HHHHcCCCCcceEEEecCchHhhHHHHHHHHh-------------------hcCCcEEEeccccccccccccCCceEEec
Q 017815 89 KAIESRLDRRCTFVALGGGVIGDMCGYAAASY-------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINH 149 (365)
Q Consensus 89 ~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-------------------~~g~p~i~IPTTl~A~~~s~~~~~~~i~~ 149 (365)
.++++++| +||||||||++|+||++|..+ ...+|+|+|||| ++|||++++.++++.
T Consensus 76 ~~~~~~~D---~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTt--agTGSE~t~~avi~~ 150 (375)
T cd08179 76 AMREFEPD---WIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPST--SGTATEVTAFSVITD 150 (375)
T ss_pred HHHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCC--CchhHhhCCeEEEEe
Confidence 99999999 999999999999999998632 124799999999 799999999999987
Q ss_pred CCC--ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHH
Q 017815 150 RLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSC 225 (365)
Q Consensus 150 ~~~--k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 225 (365)
+.. |..+ .....|+++|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+.+++
T Consensus 151 ~~~~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~Dal~ha~---E~y~s~~~~~~s~~~a~~ai~~i~~~l~~a~ 227 (375)
T cd08179 151 YEKGIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDALTHAI---EAYVSTAANDFTDPLALHAIEMIFENLPKSY 227 (375)
T ss_pred CCCCeEEEecCCcccCCEEEEChhhhcCCCHHHHHHHHHHHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3333 335689999999999999999999999999999999 777654322223333222 123344444444
Q ss_pred HhhHhh-----hhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcC------------
Q 017815 226 ENKAEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLG------------ 285 (365)
Q Consensus 226 ~~~~~~-----v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g------------ 285 (365)
.+. +. +......+|+.. .++..|.++|+|+.. + +++||+++|+.+|..+++.....
T Consensus 228 ~~~-d~~ar~~l~~as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~~i~~~ 303 (375)
T cd08179 228 EGD-DKEAREKMHNAQCMAGMAFSNALLGIVHSMAHKTGAE--F-GVPHGLANAIYLPYVIQFNSKDAEAKKRYAGLAKE 303 (375)
T ss_pred hCC-CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhccC--C-CCChHHHHHHHHHHHHHHhcccCccHHHHHHHHHH
Confidence 433 21 112234455542 234458888888765 5 79999999999998876432211
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCCC-CCHHHH---HHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 286 WIDDSIVKRVHNILQQAKLPTAPPDT-MTVEMF---KSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 286 ~~~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~---~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
...++.++++++|++++|+|+++.+. ++.+++ ++.+...... ..... -.| .+++++++.+.+++
T Consensus 304 ~~~~~~~~~i~~l~~~lglp~~L~~~gi~~~~~~~~~~~~a~~a~~-~~~~~-~~p----------~~~t~~~i~~il~~ 371 (375)
T cd08179 304 EGVEDLIEAVRELNKKLGIPACFKEYGIDEQEFLEKLDELAENAIK-DACTG-TNP----------RQPTKEEMKKLLKC 371 (375)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHhhHHHHHHHHHh-CcCCC-CCC----------CCCCHHHHHHHHHH
Confidence 00135688999999999999999887 877654 2333332211 11110 012 26788888888865
Q ss_pred H
Q 017815 362 F 362 (365)
Q Consensus 362 ~ 362 (365)
-
T Consensus 372 ~ 372 (375)
T cd08179 372 V 372 (375)
T ss_pred H
Confidence 3
No 27
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=100.00 E-value=2.2e-41 Score=331.94 Aligned_cols=296 Identities=17% Similarity=0.186 Sum_probs=222.6
Q ss_pred cccccccceeeecccch----hhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHH
Q 017815 10 DRFFGNSDTLLLISNNC----LYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLM 84 (365)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~ 84 (365)
|+||+|++++||.+.-+ .+++++ .+|++||+|+++.+ .+.+++.+.|++.| +++ .+|++++++|+.++++
T Consensus 1 ~~~~~p~~i~~G~g~l~~l~~~l~~~g-~~~~lvv~~~~~~~~~~~~~v~~~L~~~~--~~~--~~f~~v~~~p~~~~v~ 75 (377)
T cd08176 1 NRFYLPPTNLFGAGAIKEIGDELKNLG-FKKALIVTDKGLVKIGVVEKVTDVLDEAG--IDY--VIYDGVKPNPTITNVK 75 (377)
T ss_pred CcccCCCeEEECcCHHHHHHHHHHHhC-CCeEEEECCchHhhcCcHHHHHHHHHHcC--CeE--EEeCCCCCCCCHHHHH
Confidence 57999999999999844 444442 48999999999887 48999999999888 654 5678899999999999
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----------------hcCCcEEEeccccccccccccCCceEEe
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGIN 148 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----------------~~g~p~i~IPTTl~A~~~s~~~~~~~i~ 148 (365)
++++.++++++| +||||||||++|+||++|..+ ..++|+|+|||| |+|||++++.++++
T Consensus 76 ~~~~~~~~~~~D---~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt--agTgSe~t~~avi~ 150 (377)
T cd08176 76 DGLAVFKKEGCD---FIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT--AGTASEVTINYVIT 150 (377)
T ss_pred HHHHHHHhcCCC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC--CcchhccCCcEEEE
Confidence 999999999999 999999999999999998642 256899999999 79999999999998
Q ss_pred cCCC--cceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHH
Q 017815 149 HRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRS 224 (365)
Q Consensus 149 ~~~~--k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~ 224 (365)
.+.. |..+. ....|+.+|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+.++
T Consensus 151 ~~~~~~K~~~~~~~~~P~~~ivDp~l~~~~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~s~~~a~~a~~~i~~~l~~~ 227 (377)
T cd08176 151 DEERKVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMDALTHAI---EAYVSTGANPITDACALKAIELIAKNLRRA 227 (377)
T ss_pred EcCCCceeEEeCccccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7654 33332 34589999999999999999999999999999999 777654322223322211 12233344444
Q ss_pred HHhhHh-----hhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH------------HHHc
Q 017815 225 CENKAE-----VVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRL 284 (365)
Q Consensus 225 ~~~~~~-----~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l------------~~~~ 284 (365)
+.+..+ .+......+|+.. .+|..|.++|+|+.. + +++||+++|+.++..+++ ++.+
T Consensus 228 ~~~~~~~~ar~~l~~as~laG~a~~~~g~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~vl~~~~~~~~~k~~~~a~~l 304 (377)
T cd08176 228 VANGKDLEAREGMAYAQYLAGMAFNNAGLGYVHSMAHQLGGF--Y-DLPHGVCNAILLPHVMEYNAPACPERFADIAEAM 304 (377)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHhhc--C-CCChHHHHHHHHHHHHHHhhhcCHHHHHHHHHHh
Confidence 433211 1112234456542 345568888888865 5 799999999999987653 3344
Q ss_pred CCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHH
Q 017815 285 GWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIM 321 (365)
Q Consensus 285 g~~----~-----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l 321 (365)
|.. + .+.++++++|++++|+|+++.+. ++++++.+..
T Consensus 305 g~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~e~gv~~~~~~~~a 351 (377)
T cd08176 305 GVDTEGLSDEEAAEAAIDAVRALSEDVGIPAGLRELGVKEEDFELLA 351 (377)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHH
Confidence 542 1 13588999999999999999987 8888874433
No 28
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=100.00 E-value=2.4e-41 Score=333.76 Aligned_cols=288 Identities=22% Similarity=0.289 Sum_probs=222.7
Q ss_pred ccceeeecccchhhhh-ccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLYYR-HVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~-~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
|++++||.+..+.+.. ..+.+|++||+|+++.+. +.+++.+.|++.| +++ .+|++++++|+.++++++++.+++
T Consensus 1 p~~I~fG~g~~~~l~~~~~~~~k~liVtd~~~~~~g~~~~v~~~L~~~g--i~~--~~f~~v~~~p~~~~v~~~~~~~~~ 76 (398)
T cd08178 1 PPKIYFERGSLPYALLDLKGKKRAFIVTDRFMVKLGYVDKVIDVLKRRG--VET--EVFSDVEPDPSLETVRKGLELMNS 76 (398)
T ss_pred CCeEEECcCHHHHHHHHhcCCCeEEEEcChhHHhCccHHHHHHHHHHCC--CeE--EEecCCCCCcCHHHHHHHHHHHHh
Confidence 6899999998666653 223589999999998777 8999999999988 664 567899999999999999999999
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHh--------------h-------------cCCcEEEeccccccccccccCCce
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASY--------------L-------------RGVSFIQIPTTVMAQVDSSVGGKT 145 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------~-------------~g~p~i~IPTTl~A~~~s~~~~~~ 145 (365)
.++| +||||||||++|+||++|..+ . +++|+|+|||| ++|||++++.+
T Consensus 77 ~~~D---~IIaiGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTT--agTGSE~t~~a 151 (398)
T cd08178 77 FKPD---TIIALGGGSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTT--SGTGSEVTPFA 151 (398)
T ss_pred cCCC---EEEEeCCccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCC--CcccccccCeE
Confidence 9998 999999999999999998631 1 46799999999 69999999999
Q ss_pred EEecCC-C-ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCH-HHHHHHH
Q 017815 146 GINHRL-G-KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAI 221 (365)
Q Consensus 146 ~i~~~~-~-k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~-~~l~~~i 221 (365)
+++.++ + |..+ ..+..|+++|+||+++.++|++++++|++|+++|++ |.|++...+..++.++... +.+.+.+
T Consensus 152 vi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aatg~Dal~hai---E~~~s~~~~~~sd~~a~~a~~~i~~~l 228 (398)
T cd08178 152 VITDEKTGVKYPLADYALTPDMAIVDPELVMTMPKSLTADTGIDALTHAL---EAYVSVMASDFTDGLALQAIKLIFEYL 228 (398)
T ss_pred EEEecCCCeeEEeeCccccCCEEEECcHhhcCCCHHHHHHHHHHHHHHHH---HHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 998763 2 4443 346789999999999999999999999999999999 7776544333334333221 3444556
Q ss_pred HHHHHhhHhh-----hhcchhhhcc---ccccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHH-----------
Q 017815 222 KRSCENKAEV-----VSLDEKESGL---RATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSY----------- 282 (365)
Q Consensus 222 ~~~~~~~~~~-----v~~d~~~~g~---r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~----------- 282 (365)
.+++.++.+. +......+|+ +..+|++|+++|+++.. + +++||+++|++|+..+++..
T Consensus 229 ~~a~~~~~d~~ar~~~~~as~laG~a~~~~~lg~~Hal~h~l~~~--~-~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~ 305 (398)
T cd08178 229 PRSYKNGADPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGAE--F-HIPHGLANAILLPHVIRYNATDPPVKQAAFP 305 (398)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhhccC--C-CCChHHHHHHHHHHHHHhhcccccccccccc
Confidence 6666543221 1122344565 34667889999999986 5 79999999999999877542
Q ss_pred ----------------HcCCC--C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHH
Q 017815 283 ----------------RLGWI--D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMF 317 (365)
Q Consensus 283 ----------------~~g~~--~-----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~ 317 (365)
.+|.- + ++.+++++++++++|+|+++.+. ++++++
T Consensus 306 ~~~~~~~~~~~~~la~~lg~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~~~gv~~~~~ 364 (398)
T cd08178 306 QYKYPKAKERYAEIARFLGLPGKTDEEKVESLIKAIEELKKKLGIPKSIKDAGVDEEDF 364 (398)
T ss_pred cccccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 12321 1 23578889999999999999887 887765
No 29
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=100.00 E-value=2e-41 Score=332.17 Aligned_cols=293 Identities=16% Similarity=0.198 Sum_probs=219.8
Q ss_pred cccccceeeecccchhh----hhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHH
Q 017815 12 FFGNSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKV 86 (365)
Q Consensus 12 ~~~~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~ 86 (365)
||+|++++||.+..+.+ +++ +.+|++||+|+++.+. +.+++.+.|++.| +++ .+|++++++|+.++|+++
T Consensus 1 f~~p~~i~~G~g~l~~l~~~l~~~-~~~~~livt~~~~~~~~~~~~v~~~L~~~~--~~~--~~~~~v~~~p~~~~v~~~ 75 (376)
T cd08193 1 FQTPPRIVFGAGSLARLGELLAAL-GAKRVLVVTDPGILKAGLIDPLLASLEAAG--IEV--TVFDDVEADPPEAVVEAA 75 (376)
T ss_pred CCCCCeEEECcCHHHHHHHHHHHc-CCCeEEEEcCcchhhCccHHHHHHHHHHcC--CeE--EEECCCCCCcCHHHHHHH
Confidence 78999999999985544 444 2589999999998776 7899999999888 654 457889999999999999
Q ss_pred HHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----------------hcCCcEEEeccccccccccccCCceEEecC
Q 017815 87 FDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 150 (365)
Q Consensus 87 ~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----------------~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~ 150 (365)
++.++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.++++.+
T Consensus 76 ~~~~~~~~~D---~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT--agtgSe~t~~avi~~~ 150 (376)
T cd08193 76 VEAARAAGAD---GVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT--AGTGSEVTPIAIVTTP 150 (376)
T ss_pred HHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC--CcchHhhCCeEEEEcC
Confidence 9999999999 999999999999999998765 357999999999 6999999999999876
Q ss_pred CC-cceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHH-HHhhhhhhcCC-HHHHHHHHHHHHH
Q 017815 151 LG-KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ-EQNMHKLMARD-PRAFAYAIKRSCE 226 (365)
Q Consensus 151 ~~-k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~-~~~~~~~~~~~-~~~l~~~i~~~~~ 226 (365)
.+ |..+. ....|+++|+||+++.++|++++++|++|+|.|++ |.|++.. .+..++.++.. .+.+.+.+.+++.
T Consensus 151 ~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~~~~~~Dal~h~~---E~y~s~~~~~p~td~~a~~ai~~i~~~l~~a~~ 227 (376)
T cd08193 151 ETLKVGVVSPHLLPDLAILDPELTLGLPPHITAATGIDAMVHAI---EAYTSRKKANPLSDLLALEALRLLGANIPRAVK 227 (376)
T ss_pred CCceEEeeCccccCCEEEEChHHHcCCCHHHHHHHhHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 52 33332 33579999999999999999999999999999999 7777643 22223333222 1233344444444
Q ss_pred hhHhh-----hhcchhhhccccccCcc----hhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HHHHcC
Q 017815 227 NKAEV-----VSLDEKESGLRATLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLG 285 (365)
Q Consensus 227 ~~~~~-----v~~d~~~~g~r~~l~~g----H~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~~~~g 285 (365)
+..+. +......+|+. +.+.| |.++|++... + +++||+++|+.+|..++ +++.+|
T Consensus 228 ~~~~~~ar~~~~~As~laG~a-~~~~g~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~l~~~l~ 303 (376)
T cd08193 228 DGDDLEAREAMLLGAMYAGQA-FANAPVAAVHALAYPLGGK--F-HIPHGLSNALVLPHVLRFNAPAAEERYAELADALG 303 (376)
T ss_pred CCCcHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhcchhhcC--c-CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhC
Confidence 32211 11123444543 33444 5555555543 4 79999999999998775 334444
Q ss_pred CCC---------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHH
Q 017815 286 WID---------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIM 321 (365)
Q Consensus 286 ~~~---------~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l 321 (365)
... ++.++++++|++++|+|+++.+. ++.+++.+..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~lglp~~L~e~gi~~~~~~~~a 349 (376)
T cd08193 304 PDLAGASDEEAAEALIDAMEALVADLGIPQRLREVGVTEDDLPMLA 349 (376)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHH
Confidence 321 24678899999999999999988 8888875443
No 30
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=100.00 E-value=5.4e-41 Score=329.60 Aligned_cols=299 Identities=20% Similarity=0.210 Sum_probs=218.8
Q ss_pred cccccceeeecccchhhhhcc--CCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHH
Q 017815 12 FFGNSDTLLLISNNCLYYRHV--QGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 87 (365)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~--~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~ 87 (365)
||+|++++||.+..+.+.++. .++|++||||++..+. +.+++.+.|++.| +++ .+|+++++||+.+++++++
T Consensus 1 ~~~p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~--~~~--~~~~~v~~~p~~~~v~~~~ 76 (380)
T cd08185 1 YYQPTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAG--VEV--VVFDKVEPNPTTTTVMEGA 76 (380)
T ss_pred CCCCCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcC--CeE--EEeCCccCCCCHHHHHHHH
Confidence 689999999998844443321 2589999999987433 8899999999888 654 5678899999999999999
Q ss_pred HHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---------------------hcCCcEEEeccccccccccccCCceE
Q 017815 88 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---------------------LRGVSFIQIPTTVMAQVDSSVGGKTG 146 (365)
Q Consensus 88 ~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---------------------~~g~p~i~IPTTl~A~~~s~~~~~~~ 146 (365)
+.++++++| +||||||||++|+||++|..+ ...+|+|+|||| ++|||++++.++
T Consensus 77 ~~~~~~~~D---~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt--agTGSE~t~~av 151 (380)
T cd08185 77 ALAREEGCD---FVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTT--AGTGSEADPWAV 151 (380)
T ss_pred HHHHHcCCC---EEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCC--ChhhhccCCeEE
Confidence 999999999 999999999999999998753 135899999999 799999999999
Q ss_pred EecCCC--ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHH
Q 017815 147 INHRLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIK 222 (365)
Q Consensus 147 i~~~~~--k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~ 222 (365)
++.+.. |..+ .....|+++|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+.
T Consensus 152 i~~~~~~~K~~~~~~~~~P~~ailDp~l~~~~P~~~~aatg~Dal~h~i---Ea~~s~~~~~~s~~~a~~a~~li~~~l~ 228 (380)
T cd08185 152 ITNPETKEKIGLGHPATFPKISIVDPELMLTVPPHLTAYTGFDAFFHAF---EAYIANNANPMSDMLALEAIELIAKYLP 228 (380)
T ss_pred EEcCCCCeeEEecCCCccccEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCChHHHHHHHHHHHHHHHHHH
Confidence 987643 3333 234579999999999999999999999999999999 776653222222322211 122334444
Q ss_pred HHHHhhHh-----hhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHH------------H
Q 017815 223 RSCENKAE-----VVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS------------Y 282 (365)
Q Consensus 223 ~~~~~~~~-----~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~------------~ 282 (365)
+++.+..+ .+......+|+.. .++..|.++|++... +++++||+++|+.++..+++. +
T Consensus 229 ~a~~~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~~~l~~~--~~~i~HG~~~ai~lp~vl~~~~~~~~~~~~~la~ 306 (380)
T cd08185 229 RAVKDGSDLEAREKMAWANTLGGMVEANSGCTSPHALEHALSGL--HPDLPHGAGLAMLSPAYFEFFARKAPEKFAFVAR 306 (380)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHcCccchhhhHhhChHhcc--CCCCChHHHHHHHhHHHHHHhhhhCHHHHHHHHH
Confidence 44433211 1112234456541 245568888887765 336999999999988765432 1
Q ss_pred Hc--CCCC----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhc
Q 017815 283 RL--GWID----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVD 324 (365)
Q Consensus 283 ~~--g~~~----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~d 324 (365)
.. +..+ ++.++++++|++++|+|+++.+. ++++++.+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~i~~~~~~lglP~~L~e~gv~~~~~~~~a~~a 355 (380)
T cd08185 307 AEAAGLEDEEAAEDFIEALRKLLKRIGLDDLLSDLGVTKEDIPKLADNA 355 (380)
T ss_pred hccCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHH
Confidence 11 1111 23588899999999999999988 8888876555443
No 31
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=100.00 E-value=2.1e-41 Score=329.26 Aligned_cols=293 Identities=17% Similarity=0.194 Sum_probs=220.2
Q ss_pred cccccceeeecccchhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 12 FFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++|++++||.+..+.+.+...++|++||+|+.+.+. +.+++.+.|+.. . +.+|++++++|+.++++++++.+
T Consensus 1 ~~~p~~I~~G~g~~~~l~~~~~~~r~lvVtd~~~~~~g~~~~v~~~L~~~----~--~~~~~~v~~~pt~~~v~~~~~~~ 74 (355)
T TIGR03405 1 YHNPVRIHFGAGSLALAPQLLHGRRVVVVTFPEARALGLARRLEALLGGR----L--AALIDDVAPNPDVAQLDGLYARL 74 (355)
T ss_pred CCCCCeEEECCCHHHHHHHHhCCCeEEEEECcchhhcchHHHHHHHhccC----c--EEEeCCCCCCcCHHHHHHHHHHH
Confidence 7899999999999777766545699999999988664 778899988643 2 35688999999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHh--------------------hcCCcEEEeccccccccccccCCceEEecC
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 150 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------------~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~ 150 (365)
++.+ .|.|+||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.++++.+
T Consensus 75 ~~~~-~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT--agTGSE~t~~avi~d~ 151 (355)
T TIGR03405 75 WGDE-GACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT--AGTGSEVTPWATVWDA 151 (355)
T ss_pred HhcC-CCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCC--CcchhhhcCeEEEEeC
Confidence 9987 3444999999999999999998762 146899999999 6999999999998765
Q ss_pred CC--ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHH
Q 017815 151 LG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCE 226 (365)
Q Consensus 151 ~~--k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 226 (365)
.. |..+ ..+..|+++|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++.. .+.+.+.+.+++.
T Consensus 152 ~~~~K~~~~~~~~~P~~ailDp~l~~t~P~~~~a~tg~Dal~hai---E~~~s~~~~p~sd~~a~~a~~li~~~L~~~~~ 228 (355)
T TIGR03405 152 ENSKKYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHAL---ESIWNVNANPVSRGLAIQAAADISRALPEVLA 228 (355)
T ss_pred CCCeeEEeccCCccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 4444 344699999999999999999999999999999999 777765433334433322 1334455555555
Q ss_pred hhHhhhh-----cchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH------------HHHcCC
Q 017815 227 NKAEVVS-----LDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGW 286 (365)
Q Consensus 227 ~~~~~v~-----~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l------------~~~~g~ 286 (365)
+..+... .....+|+.. .++..|.++|+|... + +++||.++|+.+|..++. ++.+|
T Consensus 229 ~~~d~~aR~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~aillp~vl~~n~~~~~~~~~~~~~~~g- 304 (355)
T TIGR03405 229 QPGDLALRSDMALAALKAGLAFSNTKTALAHSISYEMTLR--H-GVPHGIACSFTLPTVLRTALGRNPSRDALLQAVFG- 304 (355)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHhhchhccC--C-CCCcHHHHHHHHHHHHHHhhccCHHHHHHHHHHhC-
Confidence 4322211 1234455531 233446666666653 4 799999999999987653 22233
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHH
Q 017815 287 IDDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSI 320 (365)
Q Consensus 287 ~~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~ 320 (365)
..++.++++++|++++|+|+++.+. ++.+++.+.
T Consensus 305 ~~~~~~~~i~~l~~~lglP~~L~~~gv~~~~~~~~ 339 (355)
T TIGR03405 305 DTASAPARLRAFLDTLGVKTRFADYGVSRDEARRM 339 (355)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHH
Confidence 1246788999999999999999987 888886443
No 32
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=100.00 E-value=2.3e-41 Score=326.51 Aligned_cols=279 Identities=20% Similarity=0.264 Sum_probs=216.7
Q ss_pred cccccceeeecccchhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 12 FFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
||+|++++||.+..+.++++. ++|++||+|+++.+. +.+++.+.|++. ++ +.+|++.++||++++++++++.+
T Consensus 1 f~~p~~i~~G~g~~~~l~~~~-~~~~lvv~~~~~~~~g~~~~v~~~l~~~---~~--~~~~~~v~~~p~~~~v~~~~~~~ 74 (332)
T cd08180 1 FSIKTKIYFGEDALERLKELK-NKRVLIVTDPFMVKSGMLDKVTDHLDSS---IE--VEIFSDVVPDPPIEVVAKGIKKF 74 (332)
T ss_pred CCCCCeEEECcCHHHHHHHhC-CCeEEEEeCchhhhCccHHHHHHHHHhc---Cc--EEEeCCCCCCcCHHHHHHHHHHH
Confidence 689999999999988887764 689999999998887 889999999764 23 35677889999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHH-----hhcCCcEEEeccccccccccccCCceEEecCC-C-ccee-eccCCc
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAAS-----YLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL-G-KNLI-GAFYQP 162 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~-----~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~-~-k~~~-~~~~~P 162 (365)
+++++| +||||||||++|+||++|.. +.+++|+|+|||| ++|||++++.++++.++ + |... +.+..|
T Consensus 75 ~~~~~d---~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt--agtgse~t~~avi~~~~~~~k~~~~~~~~~p 149 (332)
T cd08180 75 LDFKPD---IVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT--SGTGSEVTSFAVITDPETGVKYPLVDDELLP 149 (332)
T ss_pred HhcCCC---EEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC--CcchHhhCCeEEEEecCCCeeEEeeCCCccC
Confidence 999998 99999999999999998764 3457999999999 69999999999998753 2 3333 346799
Q ss_pred cEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhHhh-----hhcch
Q 017815 163 QCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKAEV-----VSLDE 236 (365)
Q Consensus 163 ~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~-----v~~d~ 236 (365)
+.+|+||+++.++|++++++|++|+++|++ |.|++...+..++.++.. .+.+.+.+.+++.+..+. +....
T Consensus 150 ~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~---E~~~s~~~~~~s~~~a~~a~~~l~~~l~~a~~~~~~~~ar~~l~~as 226 (332)
T cd08180 150 DIAILDPELVKTVPPAVTADTGMDVLTHAL---EAYVSTDANDFTDALAEKAIKLVFEYLPKAYKDGDDLEAREKMHNAS 226 (332)
T ss_pred CEEEECchhhccCCHHHHHHhHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999998 776654322233333222 123344445454432211 11123
Q ss_pred hhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-C
Q 017815 237 KESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-M 312 (365)
Q Consensus 237 ~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~-i 312 (365)
..+|+.. .++..|.++|+|+.. + +++||+++|+.++..+++ .++++.+|++++|+|+++.+. +
T Consensus 227 ~laG~a~~~~g~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~~l~~----------~~~~i~~l~~~lglp~~L~~~gi 293 (332)
T cd08180 227 CMAGMAFNNAGLGINHSLAHALGGK--F-HIPHGRANAILLPYVIEF----------LIEAIKQLKKKLNIPETLKELGV 293 (332)
T ss_pred HHHHHHHhCccchhhhhhhhhhhcC--C-CCChHHHHHHHHHHHHHH----------HHHHHHHHHHHcCCCCCHHHcCC
Confidence 4455542 234558888888765 4 799999999988887766 478999999999999999887 8
Q ss_pred CHHHH
Q 017815 313 TVEMF 317 (365)
Q Consensus 313 ~~~~~ 317 (365)
+.+++
T Consensus 294 ~~~~~ 298 (332)
T cd08180 294 DKEEF 298 (332)
T ss_pred CHHHH
Confidence 87764
No 33
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=100.00 E-value=7.1e-41 Score=327.41 Aligned_cols=290 Identities=21% Similarity=0.219 Sum_probs=215.0
Q ss_pred ccceeeecccchhh----hhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++++||.+..+.+ +++ +.+|++||||+++. +.+.+.+.|++.| +++ .++++++++|++++++++++.+
T Consensus 1 P~~i~~G~g~l~~l~~~~~~~-g~~~~livtd~~~~--~~~~~~~~l~~~~--~~~--~~~~~~~~~p~~~~v~~~~~~~ 73 (367)
T cd08182 1 PVRIIFGRGAIAKLPSLLKGL-GGKRVLLVTGPRSA--IASGLTDILKPLG--TLV--VVFDDVQPNPDLEDLAAGIRLL 73 (367)
T ss_pred CCeEEECcCHHHHHHHHHHhc-CCCeEEEEeCchHH--HHHHHHHHHHHcC--CeE--EEEcCcCCCcCHHHHHHHHHHH
Confidence 78899999884444 444 24899999999987 6678888898877 554 5678999999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHh--------------------hcCCcEEEeccccccccccccCCceEEecC
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 150 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------------~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~ 150 (365)
+++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.++++.+
T Consensus 74 ~~~~~D---~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--agtgse~t~~avi~~~ 148 (367)
T cd08182 74 REFGPD---AVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTT--AGTGSEVTPFATVWDG 148 (367)
T ss_pred HhcCcC---EEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCC--CCchhhhCCEEEEEEC
Confidence 999998 999999999999999998752 257899999999 6999999999999866
Q ss_pred C--Cccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHH
Q 017815 151 L--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCE 226 (365)
Q Consensus 151 ~--~k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 226 (365)
. .|..+ +.+..|+.+|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+.+++.
T Consensus 149 ~~~~K~~~~~~~~~P~~~i~Dp~l~~t~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~td~~a~~a~~~i~~~l~~a~~ 225 (367)
T cd08182 149 KKGIKYSLAGPALYPDTAIVDPELTLSLPPYQTASTGLDALAHAI---ESYWSKNSTPESRAYARRAIRLILENLPPLLD 225 (367)
T ss_pred CCCeeeeecCCcccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 34444 345699999999999999999999999999999999 776654322223322211 1222333433333
Q ss_pred hhHh-----hhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH--------------HHHc
Q 017815 227 NKAE-----VVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM--------------SYRL 284 (365)
Q Consensus 227 ~~~~-----~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l--------------~~~~ 284 (365)
+..+ .+......+|+.. .++..|.++|+|+.. + +++||+++|+++|..+++ ++.+
T Consensus 226 ~~~~~~ar~~l~~as~laG~a~~~~~~g~~H~l~h~l~~~--~-~i~HG~~~a~~lp~v~~~~~~~~~~~~~~~~i~~~~ 302 (367)
T cd08182 226 EPGNLEARAKMAEASLLAGLAISNTRTTAAHAISYPLTSR--Y-GVPHGLACALTLPALLRINLEALPEDLALEAILAAF 302 (367)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhchhhcC--C-CCChHHHHHHHHHHHHHHhhhhChHhhhhHHHHHHh
Confidence 2111 1112234456541 234458888887765 4 799999999999887653 2333
Q ss_pred CCC-CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHH
Q 017815 285 GWI-DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMA 322 (365)
Q Consensus 285 g~~-~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~ 322 (365)
|.. .++.++++.+|++++|+|+++.+. ++.+++.+...
T Consensus 303 ~~~~~~~~~~~i~~l~~~~glp~~L~e~gv~~~~~~~~a~ 342 (367)
T cd08182 303 GAPSAAEAAARIEALLKELGLPTRLAEYIVTREDIARLVA 342 (367)
T ss_pred CcccHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHH
Confidence 321 135689999999999999999887 88888755433
No 34
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=100.00 E-value=1.2e-40 Score=326.40 Aligned_cols=292 Identities=19% Similarity=0.209 Sum_probs=220.6
Q ss_pred ccccceeeecccchhh----hhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHH
Q 017815 13 FGNSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 87 (365)
Q Consensus 13 ~~~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~ 87 (365)
|+|++++||.+..+.+ ++++ .+|++||+|+++.+. +.+++.+.|++.| +++ .+|+++++||+.+++++++
T Consensus 2 ~~p~~i~~G~g~l~~l~~~l~~~g-~~~~lvvt~~~~~~~g~~~~v~~~L~~~g--~~~--~~~~~v~~~p~~~~v~~~~ 76 (374)
T cd08189 2 WPKPKLFVGSGSLAQLPAAISQLG-VKKVLIVTDKGLVKLGLLDKVLEALEGAG--IEY--AVYDGVPPDPTIENVEAGL 76 (374)
T ss_pred CCCceEEECcCHHHHHHHHHHhcC-CCeEEEEeCcchhhcccHHHHHHHHHhcC--CeE--EEeCCCCCCcCHHHHHHHH
Confidence 7899999999984444 4442 489999999998775 6789999999888 654 5678999999999999999
Q ss_pred HHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcC-----------------CcEEEeccccccccccccCCceEEecC
Q 017815 88 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG-----------------VSFIQIPTTVMAQVDSSVGGKTGINHR 150 (365)
Q Consensus 88 ~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g-----------------~p~i~IPTTl~A~~~s~~~~~~~i~~~ 150 (365)
+.+++.++| +||||||||++|+||++|..+.++ +|+|+|||| ++|||+++..++++.+
T Consensus 77 ~~~~~~~~d---~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--agTGsE~t~~avi~d~ 151 (374)
T cd08189 77 ALYRENGCD---AILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTT--AGTGSEVTIAAVISDP 151 (374)
T ss_pred HHHHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECC--CccccccCCeEEEEec
Confidence 999999999 999999999999999998876543 699999999 7999999999998765
Q ss_pred C--Ccceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHH
Q 017815 151 L--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCE 226 (365)
Q Consensus 151 ~--~k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 226 (365)
. .|..+. .+..|+.+|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+.+++.
T Consensus 152 ~~~~K~~~~~~~~~P~~~i~Dp~l~~t~P~~~~~a~g~Dal~h~i---E~~~s~~~~~~s~~~a~~a~~~i~~~l~~a~~ 228 (374)
T cd08189 152 ETHEKYAISDPRLLPKAAALDPRLTLGLPPHITAATGMDALTHAV---EAYIGRNATPESDAYALAAIKLIFENLPKAYE 228 (374)
T ss_pred CCCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 244443 45799999999999999999999999999999999 766653322223322222 1233445555554
Q ss_pred hhHhh-----hhcchhhhccc---cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH------------HHHcCC
Q 017815 227 NKAEV-----VSLDEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGW 286 (365)
Q Consensus 227 ~~~~~-----v~~d~~~~g~r---~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l------------~~~~g~ 286 (365)
+..+. +......+|++ ..++..|.++|+|+.. + +++||+++|+.+|..+++ ++.+|.
T Consensus 229 ~~~~~~ar~~l~~as~lag~a~~~~g~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~~g~ 305 (374)
T cd08189 229 DGSNLEAREAMALASYYAGLAFTRAGVGYVHAIAHQLGGV--Y-GIPHGLANAIVLPHVLEFYGDAAEDRLAELADALGL 305 (374)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhhcC--C-CCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCC
Confidence 43221 11123445654 2345668888888875 5 799999999999887753 333443
Q ss_pred C----C-----HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 017815 287 I----D-----DSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIM 321 (365)
Q Consensus 287 ~----~-----~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l 321 (365)
- + ++.++++++|++++|+|+++.+ ++.+++.+..
T Consensus 306 ~~~~~~~~~~~~~~i~~i~~l~~~lglP~~L~~-v~~~~~~~~a 348 (374)
T cd08189 306 GDAGESDSDLAAAFIDAVRELNRTLGIPTTLEA-IKASDIPAIA 348 (374)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCchh-CCHHHHHHHH
Confidence 1 1 2347889999999999999988 7888764433
No 35
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=100.00 E-value=1.3e-40 Score=327.03 Aligned_cols=296 Identities=18% Similarity=0.237 Sum_probs=219.1
Q ss_pred cccccccceeeecccc----hhhhhccCCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH
Q 017815 10 DRFFGNSDTLLLISNN----CLYYRHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 83 (365)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~l~~~~~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v 83 (365)
+.|+.|++++||.+.. +.++++ ++|++||+|+...+. +.+++.+.|++.| +++ .+|++++++|+.+++
T Consensus 2 ~~~~~p~~i~~G~g~~~~l~~~~~~~--~~r~livt~~~~~~~~~~~~~v~~~L~~~g--~~~--~~~~~v~~~p~~~~v 75 (382)
T cd08187 2 FTFYNPTKIIFGKGTESELGKELKKY--GKKVLLVYGGGSIKKNGLYDRVIASLKEAG--IEV--VELGGVEPNPRLETV 75 (382)
T ss_pred CeecCCCEEEECCCHHHHHHHHHHHh--CCEEEEEeCCcHHHhcCcHHHHHHHHHHcC--CeE--EEECCccCCCCHHHH
Confidence 6889999999999984 444544 589999999887754 6799999999888 654 567899999999999
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----------------hcCCcEEEeccccccccccccCCceEE
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGI 147 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----------------~~g~p~i~IPTTl~A~~~s~~~~~~~i 147 (365)
+++++.++++++| +||||||||++|+||++|..+ ..++|+|+|||| ++|||++++.+++
T Consensus 76 ~~~~~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT--agTGsE~t~~avi 150 (382)
T cd08187 76 REGIELCKEEKVD---FILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL--AATGSEMNGGAVI 150 (382)
T ss_pred HHHHHHHHHcCCC---EEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC--CchhhccCCCEEE
Confidence 9999999999999 999999999999999998754 247899999999 7999999999999
Q ss_pred ecCC--Ccceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHH-HHhhhhhhcCC-HHHHHHHHH
Q 017815 148 NHRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ-EQNMHKLMARD-PRAFAYAIK 222 (365)
Q Consensus 148 ~~~~--~k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~-~~~~~~~~~~~-~~~l~~~i~ 222 (365)
+.+. .|..+. ....|+.+|+||+++.++|++++++|++|+|.|++ |.|++.. .+..++.++.. .+.+.+.+.
T Consensus 151 ~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~~---E~~~s~~~~~~~~~~~a~~a~~li~~~l~ 227 (382)
T cd08187 151 TNEETKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVM---EQYFTYPVDADLQDRLAEGLLKTVIENGP 227 (382)
T ss_pred eccccCccccccCCCcCceEEEEChHHhccCCHHHHHHHHHHHHHHHH---HHHhCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 8763 344443 34589999999999999999999999999999998 6665432 12222222211 122334444
Q ss_pred HHHHhhHhhh-----hcchhhhcccc------ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH-----------
Q 017815 223 RSCENKAEVV-----SLDEKESGLRA------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM----------- 280 (365)
Q Consensus 223 ~~~~~~~~~v-----~~d~~~~g~r~------~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l----------- 280 (365)
+++.+..+.- ......+|+.. ..+..|.++|+|+.. + +++||+++|+.++..+++
T Consensus 228 ~a~~~~~~~~ar~~l~~as~lag~a~~~~g~~~~~~~Hal~~~l~~~--~-~i~HG~~~ai~lp~v~~~n~~~~~~~~~~ 304 (382)
T cd08187 228 KALKNPEDYEARANIMWAATLALNGLIGVGRPQDWATHMIEHELSAL--Y-DIAHGAGLAIVTPAWMRYVYKEKPAKFAQ 304 (382)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHhccCCCCCcccchhccHhhcC--c-CCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 4444322211 11122233321 123459999999875 5 799999999999977643
Q ss_pred -HHH-cCCC----C----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHH
Q 017815 281 -SYR-LGWI----D----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMA 322 (365)
Q Consensus 281 -~~~-~g~~----~----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~ 322 (365)
++. +|.. + ++.+++++++++++|+|.++.+. ++++++.+...
T Consensus 305 la~~~~g~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~~~gv~~~~l~~~a~ 357 (382)
T cd08187 305 FAKRVWGIEPEGDDEETALEGIEATEEFFKSLGLPTTLSELGIGEEDIDEMAE 357 (382)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHH
Confidence 221 2321 1 24588899999999999999987 88888754433
No 36
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-40 Score=323.24 Aligned_cols=289 Identities=20% Similarity=0.193 Sum_probs=209.1
Q ss_pred ccccccccceeeecccchhh----hhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHH
Q 017815 9 KDRFFGNSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLM 84 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~ 84 (365)
.+.||.|++++||.+..+.+ +++ ++|++||+|+++++.+.+++.+.|+..| +++. +....++|+.++++
T Consensus 2 ~~~f~~p~~i~~G~g~~~~l~~~l~~~--g~~~livtd~~~~~~~~~~v~~~l~~~~--~~~~---~~~~~~ep~~~~v~ 74 (366)
T PRK09423 2 DRIFISPSKYVQGKGALARLGEYLKPL--GKRALVIADEFVLGIVGDRVEASLKEAG--LTVV---FEVFNGECSDNEID 74 (366)
T ss_pred cccccCCceEEECCCHHHHHHHHHHHc--CCEEEEEEChhHHHHHHHHHHHHHHhCC--CeEE---EEEeCCCCCHHHHH
Confidence 37899999999999985444 444 4899999999998889999999999888 6642 23345677999999
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeecc--CCc
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF--YQP 162 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~--~~P 162 (365)
++++.++++++| +||||||||++|+||++| +.+++|+|+|||| |+|||+++++++++.+.+++..+.+ ..|
T Consensus 75 ~~~~~~~~~~~d---~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTt--agtgSe~t~~avi~~~~~~~k~~~~~~~~P 147 (366)
T PRK09423 75 RLVAIAEENGCD---VVIGIGGGKTLDTAKAVA--DYLGVPVVIVPTI--ASTDAPTSALSVIYTEEGEFERYLFLPKNP 147 (366)
T ss_pred HHHHHHHhcCCC---EEEEecChHHHHHHHHHH--HHcCCCEEEeCCc--cccCccccCceEEECCCCceeeeccccCCC
Confidence 999999999988 999999999999999996 5679999999999 7999999999999887665544333 369
Q ss_pred cEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhh---hhhcCCHHH--------HHHHHHHHHHh----
Q 017815 163 QCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH---KLMARDPRA--------FAYAIKRSCEN---- 227 (365)
Q Consensus 163 ~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~---~~~~~~~~~--------l~~~i~~~~~~---- 227 (365)
+++|+||+++.++|++++++|++|++.|++ |.|++...+..+ +......+. +.+.+.+++..
T Consensus 148 ~~~i~Dp~l~~tlP~~~~~~g~~Dal~ha~---E~y~s~~~~~~~~~~~~~~~~a~~~a~~~~~~l~~~~~~a~~~~~~~ 224 (366)
T PRK09423 148 DLVLVDTAIIAKAPARFLAAGIGDALATWF---EARACSRSGGTTMAGGKPTLAALALAELCYETLLEDGLKAKLAVEAK 224 (366)
T ss_pred CEEEEchHHHHhCCHHHHHHhHHHHHHHHH---HHHHHHhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999 777764322111 000000011 11122222110
Q ss_pred -----hHhhhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 017815 228 -----KAEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNIL 299 (365)
Q Consensus 228 -----~~~~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll 299 (365)
+.++.......+|+.. .++..|.++|+|.......+++||+++|++.+..+... ...++.++++++|+
T Consensus 225 ~~~~ar~~m~~as~~laG~a~~~~g~g~~Hal~h~l~~~~~~~~~~HG~~~a~~~~~~~~~~----~~~~~~i~~i~~l~ 300 (366)
T PRK09423 225 VVTPALENVIEANTLLSGLGFESGGLAAAHAIHNGLTALEDTHHLTHGEKVAFGTLTQLVLE----NRPKEEIEEVIDFC 300 (366)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCchHHHHHHHHhhhcchhhhhcccccHHHHHHHHHHHhc----CCCHHHHHHHHHHH
Confidence 1111111123456542 23445777777776422237999999998755443321 12367899999999
Q ss_pred HHcCCCCCCCCC-C---CHHHHH
Q 017815 300 QQAKLPTAPPDT-M---TVEMFK 318 (365)
Q Consensus 300 ~~lglp~~~~~~-i---~~~~~~ 318 (365)
+++|+|+++.+. + +.+++.
T Consensus 301 ~~lglP~~L~~~gi~~~~~~~~~ 323 (366)
T PRK09423 301 HAVGLPTTLADLGLKEDSDEELR 323 (366)
T ss_pred HHCCCCCcHHHcCCCCCCHHHHH
Confidence 999999999876 5 356653
No 37
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=100.00 E-value=2.1e-40 Score=320.39 Aligned_cols=289 Identities=19% Similarity=0.201 Sum_probs=216.5
Q ss_pred ccceeeecccch----hhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNC----LYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~~----~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++++||.+..+ .+++++ .+|++||+|+++++.+.+++.+.|++.+ + .+|.+.+++|+.++++++++.+
T Consensus 1 p~~i~~G~g~l~~l~~~l~~~g-~~~~livt~~~~~~~~~~~v~~~l~~~~--~----~~~~~~~~~p~~~~v~~~~~~~ 73 (337)
T cd08177 1 PQRVVFGPGALAALAAELERLG-ASRALVLTTPSLATKLAERVASALGDRV--A----GTFDGAVMHTPVEVTEAAVAAA 73 (337)
T ss_pred CCeEEECCCHHHHHHHHHHHcC-CCeEEEEcChHHHHHHHHHHHHHhccCC--c----EEeCCCCCCCCHHHHHHHHHHH
Confidence 678899988844 445553 5899999999999889999999998764 2 3467889999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCccee-eccCCccEEEEeh
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-GAFYQPQCVLVDT 169 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~-~~~~~P~~viiD~ 169 (365)
++.++| +||||||||++|+||++|. ..++|+|+|||| + ++|++++.++++.++.|..+ ..++.|+.+|+||
T Consensus 74 ~~~~~d---~IIaiGGGs~iD~aK~ia~--~~~~p~i~IPTt--a-tgse~t~~avit~~g~K~~i~~~~~~P~~~i~Dp 145 (337)
T cd08177 74 REAGAD---GIVAIGGGSTIDLAKAIAL--RTGLPIIAIPTT--L-SGSEMTPIAGVTENGVKTTGRDPEVLPRTVIYDP 145 (337)
T ss_pred HhcCCC---EEEEeCCcHHHHHHHHHHH--HhcCCEEEEcCC--c-hhhhhcCeEEEecCCceeEeeCccccCCEEEECh
Confidence 999998 9999999999999999975 459999999999 4 78899999888766555554 3467999999999
Q ss_pred hhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhHhh-----hhcchhhhcccc
Q 017815 170 DTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKAEV-----VSLDEKESGLRA 243 (365)
Q Consensus 170 ~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~-----v~~d~~~~g~r~ 243 (365)
+++.++|+++++++++|++.|++ |.|++...+..++.++.. .+.+.+.+.+.+.+..+. +......+|+..
T Consensus 146 ~l~~~~P~~~~~~~g~Dal~h~i---E~~~s~~~~~~s~~~a~~ai~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~a~ 222 (337)
T cd08177 146 ELTLTTPRRLWLSSGIRAIDHAV---EALYAPDANPIVDLLAEEGIRALAEALPRIKADPDDLDARLDALYGAWLCGTCL 222 (337)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 777765433333333221 122333444444332111 111233445432
Q ss_pred ---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH------------HHHcCCCCHHHHHHHHHHHHHcCCCCCC
Q 017815 244 ---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWIDDSIVKRVHNILQQAKLPTAP 308 (365)
Q Consensus 244 ---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l------------~~~~g~~~~~~~~~i~~ll~~lglp~~~ 308 (365)
.++..|.++|+|+.. | +++||+++|+.++..+++ ++.+|.-.++.+++++++++++|+|+++
T Consensus 223 ~~~~~g~~H~l~h~l~~~--~-~~~HG~~~ai~lp~vl~~~~~~~~~~~~~~a~~l~~~~~~~~~~i~~l~~~lglp~~l 299 (337)
T cd08177 223 GSVGMGLSHKLGHVLGGT--F-GLPHAETSCIVLPHVLAFNAPAAPEALARLARALGLGAADAADALADLARSLGAPTSL 299 (337)
T ss_pred ccccHHHHHHhhCccccC--c-CCCcHHHHHHHHHHHHHhcCcCCHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCH
Confidence 234557777777765 5 799999999999887753 3334432345689999999999999999
Q ss_pred CCC-CCHHHHHHHHHhc
Q 017815 309 PDT-MTVEMFKSIMAVD 324 (365)
Q Consensus 309 ~~~-i~~~~~~~~l~~d 324 (365)
.+. ++.+++.+.....
T Consensus 300 ~e~gi~~~~~~~~~~~a 316 (337)
T cd08177 300 ADLGVPRDDIDRAAELA 316 (337)
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 988 8988876555543
No 38
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=100.00 E-value=6.5e-40 Score=320.95 Aligned_cols=293 Identities=16% Similarity=0.143 Sum_probs=219.2
Q ss_pred cccceeeecccchh----hhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHH
Q 017815 14 GNSDTLLLISNNCL----YYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 88 (365)
Q Consensus 14 ~~~~~~~~~~~~~~----l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~ 88 (365)
.|++++||.+..+. +++++ .+|++||+|+++.+. +.+++.+.|++.| +++ .+|.+++++|+.++++++++
T Consensus 1 ~p~~i~~G~g~~~~l~~~l~~~g-~~~~liv~~~~~~~~~~~~~v~~~L~~~g--~~~--~~~~~v~~~p~~~~v~~~~~ 75 (370)
T cd08192 1 YPTRIRFGAGAIKELPAECAELG-IKRPLIVTDPGLAALGLVARVLALLEDAG--LAA--ALFDEVPPNPTEAAVEAGLA 75 (370)
T ss_pred CCceEEECcCHHHHHHHHHHHcC-CCeEEEEcCcchhhCccHHHHHHHHHHcC--CeE--EEeCCCCCCCCHHHHHHHHH
Confidence 38899999988444 44442 489999999998776 7899999999988 664 45678899999999999999
Q ss_pred HHHHcCCCCcceEEEecCchHhhHHHHHHHHhh--------------------cCCcEEEeccccccccccccCCceEEe
Q 017815 89 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYL--------------------RGVSFIQIPTTVMAQVDSSVGGKTGIN 148 (365)
Q Consensus 89 ~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~--------------------~g~p~i~IPTTl~A~~~s~~~~~~~i~ 148 (365)
.+++.++| +||||||||++|+||++|..+. ..+|+|+|||| ++|||++++.++++
T Consensus 76 ~~~~~~~d---~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--agtgse~t~~avi~ 150 (370)
T cd08192 76 AYRAGGCD---GVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTT--AGTGSEVGRAAVIT 150 (370)
T ss_pred HHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCC--CchhhhhCCceEEE
Confidence 99999999 9999999999999999987642 23899999999 69999999999887
Q ss_pred cCC--Ccceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHH
Q 017815 149 HRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRS 224 (365)
Q Consensus 149 ~~~--~k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~ 224 (365)
.+. .|..+. ....|+++|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++.. .+.+.+.+.++
T Consensus 151 ~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~s~~~a~~a~~~~~~~l~~~ 227 (370)
T cd08192 151 DEDTGRKLIIFSPHLLPKAAICDPELTLGLPAGLTAATGMDALTHCI---EAYLSPGFNPMADGIALEGLRLISRHLERA 227 (370)
T ss_pred eCCCCeeEEeeCCcccCCEEEEChhhhhCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 653 355443 44689999999999999999999999999999999 776653322223322211 12333444444
Q ss_pred HHhhHhh-----hhcchhhhcccc--ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHH------------HHcC
Q 017815 225 CENKAEV-----VSLDEKESGLRA--TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS------------YRLG 285 (365)
Q Consensus 225 ~~~~~~~-----v~~d~~~~g~r~--~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~------------~~~g 285 (365)
+.+..+. +......+|+.. .+|..|.++|+|+.. | +++||.++|+.+|..+++. +.++
T Consensus 228 ~~~~~~~~ar~~~~~as~laG~a~~~~~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~k~~~~a~~~~ 304 (370)
T cd08192 228 VRDGGDLEARGGMMMAASMGAMAFQKGLGAVHSLSHPLGAL--Y-NLHHGLLNAVLLPYVLRFNRPAIEEKIARLARALA 304 (370)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHhhccHHHHHhhhHHhhC--C-CCChHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhC
Confidence 4432111 112234455542 345668899998876 5 7999999999999877642 2222
Q ss_pred CC---CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHH
Q 017815 286 WI---DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMA 322 (365)
Q Consensus 286 ~~---~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~ 322 (365)
.. .++.++++++|++++|+|+++.+. ++.+++.+...
T Consensus 305 ~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~ 345 (370)
T cd08192 305 MGLGGFADFADAILALNARLGIPHTLRELGVDEDDLDRIAE 345 (370)
T ss_pred CchhHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHH
Confidence 21 134578999999999999999988 88888755544
No 39
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=100.00 E-value=4.3e-40 Score=302.44 Aligned_cols=320 Identities=21% Similarity=0.300 Sum_probs=243.6
Q ss_pred ecccccccccceeeecccchhhhhccC-CceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH
Q 017815 7 LYKDRFFGNSDTLLLISNNCLYYRHVQ-GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 83 (365)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v 83 (365)
|+++.||+||+++||+++-..|.+.++ .+|+||+++.+..++ ..+++.++|+ | ++ ++.|.++||||.++++
T Consensus 1 M~nF~y~nPTki~FGkg~i~~l~~ei~~~~kVLi~YGGGSIKrnGvydqV~~~Lk--g--~~--~~E~~GVEPNP~~~Tv 74 (384)
T COG1979 1 MNNFTYHNPTKILFGKGQIAELREEIPKDAKVLIVYGGGSIKKNGVYDQVVEALK--G--IE--VIEFGGVEPNPRLETL 74 (384)
T ss_pred CCCccccCCceEEecCchHHHHHhhccccCeEEEEecCccccccchHHHHHHHhc--C--ce--EEEecCCCCCchHHHH
Confidence 678999999999999999777766543 689999999998887 8999999998 4 44 5789999999999999
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh----------------cCCcEEEeccccccccccccCCceEE
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGI 147 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~----------------~g~p~i~IPTTl~A~~~s~~~~~~~i 147 (365)
.+.++.++++++| +|+|||||||+|.+||+|++.. .-+|+-+|=|- ++|||++.+.++|
T Consensus 75 ~kaV~i~kee~id---flLAVGGGSViD~tK~IAa~a~y~GD~Wdi~~~~~~i~~alP~g~VLTL--pATGSEmn~~aVI 149 (384)
T COG1979 75 MKAVEICKEENID---FLLAVGGGSVIDGTKFIAAAAKYDGDPWDILTKKHKIKDALPIGTVLTL--PATGSEMNAGAVI 149 (384)
T ss_pred HHHHHHHHHcCce---EEEEecCcchhhhHHHHHhhcccCCChHHHHhcCCccccccccceEEEc--cccccccCCCcee
Confidence 9999999999999 9999999999999999998632 23788888777 6899999999999
Q ss_pred ecCCCcc--eeec-cCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHH
Q 017815 148 NHRLGKN--LIGA-FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRS 224 (365)
Q Consensus 148 ~~~~~k~--~~~~-~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 224 (365)
+....+. ..++ ...|++.|+||+.+.|+|++++++|++|++.|.+ |.||+.-.+ ...++.++|.+.+.
T Consensus 150 t~~~t~eK~~~~S~~v~PkFsvLDP~~tyTlP~~Q~a~G~vDa~sHv~---EqYft~~~~------a~lQDr~aE~~l~T 220 (384)
T COG1979 150 TNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQTANGVVDAFSHVF---EQYFTYPVN------AKLQDRFAEGILRT 220 (384)
T ss_pred cccccccceeccCcccccceEEeCCcceeecChHHhhhhHHHHHHHHH---HHHhcCcCC------chhhHHHHHHHHHH
Confidence 8765433 3333 3589999999999999999999999999999998 777764321 11245666777666
Q ss_pred HHhhHhhhhcchhhhcccc------------ccCcc-------hhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHH----
Q 017815 225 CENKAEVVSLDEKESGLRA------------TLNLG-------HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS---- 281 (365)
Q Consensus 225 ~~~~~~~v~~d~~~~g~r~------------~l~~g-------H~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~---- 281 (365)
+-.....+.+++.+...|+ .++.| |.++|.+.+. | +++||...|+.+|..+...
T Consensus 221 lIe~gpk~l~~p~nY~~RanlmWaaT~AlNGli~~G~~~DWAtH~i~HelsA~--y-~i~Ha~~LAIv~P~~m~~~~~~k 297 (384)
T COG1979 221 LIEYGPKLLEDPENYEARANLMWAATMALNGLIGAGVPQDWATHMIGHELTAL--Y-DIDHAQGLAIVLPAWMNYTLDQK 297 (384)
T ss_pred HHHHhHHHhcCCccHHHHHHHHHHHHHHhhchhhcCCCCchhhhhhcchhhhh--c-CCccccceeEechHHHHHHHhhc
Confidence 6555555544443333331 23333 8888888876 6 7999999999888776422
Q ss_pred --------HH-cCCCC-------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcce
Q 017815 282 --------YR-LGWID-------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNC 344 (365)
Q Consensus 282 --------~~-~g~~~-------~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~ 344 (365)
.+ +|..+ .+.++++++|++++|.|+.+++. |+.|.+.-++..-.++..+. +|+.
T Consensus 298 ~~k~~q~a~rV~gi~~g~~~e~i~~~I~ktr~ff~slGv~trlsdygi~~e~~~~~~~~l~~~~~~~---------lG~~ 368 (384)
T COG1979 298 RAKLLQYAERVWGITEGSDDEIIDEAIAKTREFFESLGVPTRLSDYGIDEEKIPLLLEKLEKHGMGT---------LGEF 368 (384)
T ss_pred HHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHcCCccchhhcCCChhhhHHHHHHHHhccccc---------cccc
Confidence 11 33321 35689999999999999999988 88887543333223332222 3432
Q ss_pred EEccCCCHHHHHHHHHH
Q 017815 345 VFTGDYDRKALDDTLYA 361 (365)
Q Consensus 345 ~~~~~~~~~~l~~~~~~ 361 (365)
.+++.+..++.+++
T Consensus 369 ---~~l~~~dv~~Il~~ 382 (384)
T COG1979 369 ---GDLNLQDVREILEA 382 (384)
T ss_pred ---ccccHHHHHHHHHh
Confidence 47788888887764
No 40
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=100.00 E-value=9.4e-40 Score=320.28 Aligned_cols=292 Identities=21% Similarity=0.236 Sum_probs=215.7
Q ss_pred ccccceeeecccchh----hhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHH
Q 017815 13 FGNSDTLLLISNNCL----YYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 87 (365)
Q Consensus 13 ~~~~~~~~~~~~~~~----l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~ 87 (365)
|.|++++||.+..+. +++++ .+|++||+|+.+.+. +.+++.+.|++.| +++ .+|++++++|+.+++.+++
T Consensus 4 ~~~~~i~~G~g~l~~l~~~l~~~g-~~~~livt~~~~~~~~~~~~v~~~L~~~~--~~~--~~~~~v~~~p~~~~v~~~~ 78 (377)
T cd08188 4 FVAPEIIFGRGALKLAGRYARRLG-AKKVLLVSDPGVIKAGWVDRVIESLEEAG--LEY--VVFSDVSPNPRDEEVMAGA 78 (377)
T ss_pred ccCCceEECcCHHHHHHHHHHHcC-CCeEEEEeCcchhhCccHHHHHHHHHHcC--CeE--EEeCCCCCCCCHHHHHHHH
Confidence 667789999998444 44443 589999999998776 7899999999888 654 4577888999999999999
Q ss_pred HHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh----------------cCCcEEEeccccccccccccCCceEEecCC
Q 017815 88 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGINHRL 151 (365)
Q Consensus 88 ~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~----------------~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~ 151 (365)
+.+++.++| +||||||||++|+||++|.... ..+|+|+|||| ++|||++++.++++.+.
T Consensus 79 ~~~~~~~~d---~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT--~gTgSE~t~~avi~d~~ 153 (377)
T cd08188 79 ELYLENGCD---VIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT--AGSGADVSQFAIITDTE 153 (377)
T ss_pred HHHHhcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC--CccccccCCeEEEEeCC
Confidence 999999998 9999999999999999976431 14799999999 69999999999997653
Q ss_pred C--ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHh
Q 017815 152 G--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCEN 227 (365)
Q Consensus 152 ~--k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 227 (365)
. |..+ +....|+++|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++.. .+.+.+.+.+++.+
T Consensus 154 ~~~K~~i~~~~~~P~~vi~Dp~l~~~lP~~~~~~~~~Dal~hai---E~~~s~~~~~~sd~~a~~a~~~i~~~L~~~~~~ 230 (377)
T cd08188 154 RKVKMAIISKSLVPDIALIDPETLTTMPPELTAATGLDALTHAI---EAYVSNASSPLTDLHALEAIRLIAANLPPAIAN 230 (377)
T ss_pred CCeeEEEeCccccCCEEEECHHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2 4444 334579999999999999999999999999999999 777764332233332211 12233444444433
Q ss_pred hHhh-----hhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH------------HHHcCCC
Q 017815 228 KAEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWI 287 (365)
Q Consensus 228 ~~~~-----v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l------------~~~~g~~ 287 (365)
..+. +......+|+.. .++..|.++|+|... + +++||+++|+.+|..+++ ++.+|..
T Consensus 231 ~~~~~ar~~l~~As~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~vl~~~~~~~~~~~~~la~~~g~~ 307 (377)
T cd08188 231 PTDLEARESMMLASLQAGLAFSNAILGAVHAMAHSLGGL--L-DLPHGECNAILLPHVMEFNYPAAPERYARIAEALGLD 307 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhhhhhC--c-CCChHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhCCC
Confidence 2111 111133455431 223447777776654 5 799999999999887753 4444532
Q ss_pred C---------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHH
Q 017815 288 D---------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSI 320 (365)
Q Consensus 288 ~---------~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~ 320 (365)
. ++.++++++|++++|+|+++.+. ++++++.+.
T Consensus 308 ~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~i 350 (377)
T cd08188 308 VRGLTTEEAALAVIEAVRRLRAALGVPETLGDLGVKREDIPLL 350 (377)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHH
Confidence 1 24588999999999999999988 888887543
No 41
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=100.00 E-value=1.3e-39 Score=320.26 Aligned_cols=290 Identities=20% Similarity=0.232 Sum_probs=214.8
Q ss_pred ccceeeecccchhh----hhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 89 (365)
Q Consensus 15 ~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~ 89 (365)
|++++||.+.-+.+ +++ ++|++||+|+++.+ .+.+++.+.|++.| +++ .+|++++++|+.+++.+.++.
T Consensus 1 p~~i~fG~g~l~~l~~~~~~~--g~~~livt~~~~~~~~~~~~v~~~L~~~~--~~~--~~f~~v~~~~~~~~v~~~~~~ 74 (386)
T cd08191 1 PGTLLFGAGQRRQLPRLAARL--GSRALIVTDERMAGTPVFAELVQALAAAG--VEV--EVFDGVLPDLPRSELCDAASA 74 (386)
T ss_pred CCeEEECcCHHHHHHHHHHHc--CCeEEEEECcchhhcchHHHHHHHHHHcC--CeE--EEECCCCCCcCHHHHHHHHHH
Confidence 68899999884444 444 48999999999887 48899999999988 664 557888888899999999999
Q ss_pred HHHcCCCCcceEEEecCchHhhHHHHHHHHhhc----------------CCcEEEeccccccccccccCCceEEecCCC-
Q 017815 90 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLR----------------GVSFIQIPTTVMAQVDSSVGGKTGINHRLG- 152 (365)
Q Consensus 90 ~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~----------------g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~- 152 (365)
++++++| +||||||||++|+||++|..+.. ++|+|+|||| ++|||++++.++++.+..
T Consensus 75 ~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt--agTGSE~t~~avi~~~~~~ 149 (386)
T cd08191 75 AARAGPD---VIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT--AGTGSEVTPVAVLTDPDNA 149 (386)
T ss_pred HHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC--CcchhhhCCeEEEEeCCCC
Confidence 9999988 99999999999999999876643 7899999999 799999999999986543
Q ss_pred -cceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHH---------------HhhhhhhcCC-H
Q 017815 153 -KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQE---------------QNMHKLMARD-P 214 (365)
Q Consensus 153 -k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~---------------~~~~~~~~~~-~ 214 (365)
|..+. .+..|+++|+||+++.++|++++++|++|++.|++ |.|++... +..++.++.. .
T Consensus 150 ~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~i---Ea~~s~~~~~~~~~~~~~~~~~~~p~sd~~a~~a~ 226 (386)
T cd08191 150 MKVGVASPHLRPAIAIIDPELTLTCPPGVTADSGADALTHAI---ESFTAMDRNPFPDGDADHVYSGKNALTDLFAREAI 226 (386)
T ss_pred ceEEEeCCCcccCEEEECHHHhcCCCHHHHHHHHHHHHHHHH---HHHhCCCccccccccccccccCCCHHHHHHHHHHH
Confidence 44443 34689999999999999999999999999999999 77765421 1112222211 1
Q ss_pred HHHHHHHHHHHHhhHhhhh-----cchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH-------
Q 017815 215 RAFAYAIKRSCENKAEVVS-----LDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------- 279 (365)
Q Consensus 215 ~~l~~~i~~~~~~~~~~v~-----~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------- 279 (365)
+.+.+.+.+++.+..+..+ .....+|+.. .++..|.++|+|... + +++||+++|+.+|..++
T Consensus 227 ~li~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~aillp~v~~~n~~~~~ 303 (386)
T cd08191 227 RLIGRSLPRAVRDGDDLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGAL--T-HTSHGFGVAALLPYVMRFNLPARR 303 (386)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhhhcC--c-CCChHHHHHHHhHHHHHHhhhhhH
Confidence 2333444444443322111 1133455531 234457777777654 5 79999999999988665
Q ss_pred -----HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHH
Q 017815 280 -----MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIM 321 (365)
Q Consensus 280 -----l~~~~g~~----~-----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l 321 (365)
++..+|.. + ++.++++++|++++|+|+++.+. ++.+++.+..
T Consensus 304 ~k~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lglP~~L~e~gv~~~~~~~~a 360 (386)
T cd08191 304 EEFAEIGRVLGVAAGDHSADEQAAAAITRVEALLAAIGIPTTLAALGVTEADLDGVA 360 (386)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHH
Confidence 33334432 1 24688999999999999999988 8888875443
No 42
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=100.00 E-value=2.8e-39 Score=317.59 Aligned_cols=319 Identities=17% Similarity=0.111 Sum_probs=226.0
Q ss_pred cceeeecccchh----hhhcc--CCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHH
Q 017815 16 SDTLLLISNNCL----YYRHV--QGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 87 (365)
Q Consensus 16 ~~~~~~~~~~~~----l~~~~--~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~ 87 (365)
|+++||.+.-+. ++++. +.+|++||+|+++.+. +.+++.+.|++.| +++ .+|++++++|+++++++++
T Consensus 2 t~i~fG~g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~g--i~~--~~f~~v~~~p~~~~v~~~~ 77 (383)
T cd08186 2 TTLYFGVGAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHG--IEY--VLYNKVTPNPTVDQVDEAA 77 (383)
T ss_pred CeEEECcCHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcC--CeE--EEeCCCCCCCCHHHHHHHH
Confidence 788999988444 44441 2489999999998775 5799999999888 654 5678899999999999999
Q ss_pred HHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh-----------------cCCcEEEeccccccccccccCCceEEecC
Q 017815 88 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-----------------RGVSFIQIPTTVMAQVDSSVGGKTGINHR 150 (365)
Q Consensus 88 ~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~-----------------~g~p~i~IPTTl~A~~~s~~~~~~~i~~~ 150 (365)
+.++++++| +||||||||++|+||++|..+. ..+|+|+|||| |+|||++++.++++.+
T Consensus 78 ~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT--agTGSE~t~~avi~~~ 152 (383)
T cd08186 78 KLGREFGAQ---AVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT--HGTGTEVDRFAVASID 152 (383)
T ss_pred HHHHHcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC--ChhhhhhCCeEEEEEc
Confidence 999999998 9999999999999999987531 25899999999 7999999999999876
Q ss_pred CC--ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHH
Q 017815 151 LG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCE 226 (365)
Q Consensus 151 ~~--k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 226 (365)
.. |..+ .....|+++|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++.. .+.+.+.+.+++.
T Consensus 153 ~~~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~DAl~Hai---E~~~s~~~~~~sd~~a~~a~~li~~~l~~a~~ 229 (383)
T cd08186 153 ETEEKPGIAYDCIYPDYSIDDPALTTTLPPDQTIYTSIDALNHVV---EAATTTTANPYSILLAKEAVRLIAEYLPKALE 229 (383)
T ss_pred CCCceEEEeCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 3333 333589999999999999999999999999999999 777754322223332222 1233344455544
Q ss_pred hhHhhhh-----cchhhhccccccC----cchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH------------HHHcC
Q 017815 227 NKAEVVS-----LDEKESGLRATLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLG 285 (365)
Q Consensus 227 ~~~~~v~-----~d~~~~g~r~~l~----~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l------------~~~~g 285 (365)
+..+..+ .....+|+. +.+ ..|.++|+|... +.+++||+++|+.+|..+++ ++.++
T Consensus 230 ~~~~~~ar~~m~~as~laG~a-~~~~~~g~~Hai~~~l~~~--~~~ipHG~~~aillp~vl~~n~~~~~~~~~~la~~~~ 306 (383)
T cd08186 230 EPDNLQARYWLLYASAIAGIA-IDNGLLHLTHALEHPLSAL--KPDLPHGAGLAILLPAVVKHIYPATPEILAELLRPLV 306 (383)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HhcchhHHHHHhcCchhcC--CCCCChHHHHHHHHHHHHHHhhhhCHHHHHHHHHHhC
Confidence 3322211 123445553 333 345555555543 13799999999999887653 33333
Q ss_pred CC---C----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEE--E-EeeCCCCcceEEccCCCHHH
Q 017815 286 WI---D----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLR--L-ILLKGPLGNCVFTGDYDRKA 354 (365)
Q Consensus 286 ~~---~----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~--~-~l~~~~~g~~~~~~~~~~~~ 354 (365)
.. . ++.++++++|++++|+|+++.+. ++++++.+......+. .... + ..| .++++|+
T Consensus 307 ~~~~~~~~~a~~~i~~l~~l~~~lglP~~L~~~gv~~~~~~~~a~~a~~~--~~~~~~~~~nP----------~~~t~e~ 374 (383)
T cd08186 307 PGLKGVPEEAEKAAKAVEKWLFSIGITEKLSDYGFTEGDVEKLTELAVTT--PSLKLLLSLAP----------VEASREV 374 (383)
T ss_pred cccCCchHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhc--ccccccccCCC----------CCCCHHH
Confidence 11 1 24688999999999999999988 8888765443332221 1110 0 012 2677888
Q ss_pred HHHHHHH
Q 017815 355 LDDTLYA 361 (365)
Q Consensus 355 l~~~~~~ 361 (365)
+.+.+++
T Consensus 375 i~~il~~ 381 (383)
T cd08186 375 IARIYTD 381 (383)
T ss_pred HHHHHHH
Confidence 8888765
No 43
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=100.00 E-value=2.5e-39 Score=320.52 Aligned_cols=321 Identities=18% Similarity=0.181 Sum_probs=227.1
Q ss_pred cceeeeccc----chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 16 SDTLLLISN----NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 16 ~~~~~~~~~----~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
++++||.+. ++.+++++ .+|++||+|+++.+. +.+++.+.|++.| +++ .+|++++++|+.+++.++++.+
T Consensus 2 ~~i~fG~g~~~~l~~~l~~~g-~~~vlivt~~~~~~~g~~~~v~~~L~~~g--i~~--~~f~~v~~~p~~~~v~~~~~~~ 76 (414)
T cd08190 2 SNIRFGPGVTAEVGMDLKNLG-ARRVCLVTDPNLAQLPPVKVVLDSLEAAG--INF--EVYDDVRVEPTDESFKDAIAFA 76 (414)
T ss_pred CeEEECcCHHHHHHHHHHHcC-CCeEEEEECcchhhcchHHHHHHHHHHcC--CcE--EEeCCCCCCcCHHHHHHHHHHH
Confidence 578899888 44455553 589999999998876 6899999999888 664 4578899999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhh---------------c-------CCcEEEeccccccccccccCCceEEe
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYL---------------R-------GVSFIQIPTTVMAQVDSSVGGKTGIN 148 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~---------------~-------g~p~i~IPTTl~A~~~s~~~~~~~i~ 148 (365)
+++++| +||||||||++|+||++|..+. + .+|+|+|||| ++|||+++..++++
T Consensus 77 ~~~~~D---~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT--agTGSE~t~~avi~ 151 (414)
T cd08190 77 KKGQFD---AFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTT--AGTGSETTGVAIFD 151 (414)
T ss_pred HhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCC--Cchhhhhccceeee
Confidence 999999 9999999999999999985432 1 1699999999 79999999999998
Q ss_pred cCC--Ccceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHH-------------------HHhh
Q 017815 149 HRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ-------------------EQNM 206 (365)
Q Consensus 149 ~~~--~k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~-------------------~~~~ 206 (365)
.+. .|..+. ....|+.+|+||+++.++|++++++|++|+|+|++ |.|++.. .+..
T Consensus 152 ~~~~~~K~~i~~~~~~P~~ailDp~l~~tlP~~~ta~tg~DAl~hai---Eay~s~~~~~~~~~~~~~~~~~~~~~~~p~ 228 (414)
T cd08190 152 LPELKAKTGIASRALKPTLGIVDPLNTLTMPSRVTASSGLDVLCHAL---ESYTAIPYNQRPPRPSNPIQRPAYQGSNPI 228 (414)
T ss_pred ccCCCeeEEeeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcccccccccccccccccccccCCCHH
Confidence 653 344443 34589999999999999999999999999999999 7777641 1111
Q ss_pred hhhhcCC-HHHHHHHHHHHHHhhHhh-----hhcchhhhcccc---ccCcchhHHHHhhhccC------C----CCCCcH
Q 017815 207 HKLMARD-PRAFAYAIKRSCENKAEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFG------Y----GQWLHG 267 (365)
Q Consensus 207 ~~~~~~~-~~~l~~~i~~~~~~~~~~-----v~~d~~~~g~r~---~l~~gH~~~Hale~~~~------~----~~~~HG 267 (365)
++.++.. .+.+.+.+.+++.+..+. +......+|+.. .++..|.++|++....+ | .+++||
T Consensus 229 sd~~a~~ai~li~~~l~~a~~~~~d~~AR~~~~~As~laG~a~~~~g~~~~Hai~~~l~~~~~~~~~~~~~~~~~~ipHG 308 (414)
T cd08190 229 SDIWSLQALRIVGKYLRRAVADPDDLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDYPVDHPLVPHG 308 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhCcchhhhhHhccHhhcCcCccccccccccCCCCChH
Confidence 2222211 122333444444332221 112235566541 23445888888776532 1 138999
Q ss_pred HHHHHHHHHHHHH------------HHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcc
Q 017815 268 EAVAAGMVMAVDM------------SYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDK 325 (365)
Q Consensus 268 ~~vaig~~~~~~l------------~~~~g~~----~-----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dk 325 (365)
+++|+.+|..+++ ++.+|.- + ++.++++++|++++|+|+++.+. ++.+++. .+....
T Consensus 309 ~~~ai~lp~vl~~n~~~~~~k~~~~a~~lg~~~~~~~~~~~~~~~i~~i~~l~~~lglP~~L~e~Gv~~~~~~-~ia~~a 387 (414)
T cd08190 309 LSVVVTAPAVFRFTAPACPERHLEAAEILGADTSNAKIEDAGEVLADALRKLMRDLGVPDGLAALGYTESDIP-ALVKGT 387 (414)
T ss_pred HHHHHHHHHHHHhhhhhCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHH-HHHHHH
Confidence 9999999987653 4445532 1 12488999999999999999988 8888874 444322
Q ss_pred cccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 326 KVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 326 k~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
. +..+..-..| ..++++++.+.+++
T Consensus 388 ~-~~~~~~~~np----------~~~t~~~i~~il~~ 412 (414)
T cd08190 388 L-PQQRVLKLAP----------RPVDEEDLAALFEE 412 (414)
T ss_pred H-hccccccCCC----------CCCCHHHHHHHHHH
Confidence 1 1111000012 26778888888765
No 44
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=2.6e-39 Score=314.00 Aligned_cols=312 Identities=19% Similarity=0.196 Sum_probs=218.2
Q ss_pred cccceeeecccch----hhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHH
Q 017815 14 GNSDTLLLISNNC----LYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 89 (365)
Q Consensus 14 ~~~~~~~~~~~~~----~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~ 89 (365)
.|++++||.+..+ +++++ ++|++||+|+++++.+.+++.+.|++.+ +. +.+|+ ++ |++++++++++.
T Consensus 1 ~p~~i~~G~g~l~~l~~~~~~~--~~~~liv~d~~~~~~~~~~l~~~L~~~~--~~--~~~~~-~~--p~~~~v~~~~~~ 71 (347)
T cd08172 1 GPGRYISGEGALDELGELLKRF--GKRPLIVTGPRSWAAAKPYLPESLAAGE--AF--VLRYD-GE--CSEENIERLAAQ 71 (347)
T ss_pred CCCeEEeCcCHHHHHHHHHHHh--CCeEEEEECHHHHHHHHHHHHHHHhcCe--EE--EEEeC-CC--CCHHHHHHHHHH
Confidence 4789999998844 44444 5899999999998889999999996554 43 34454 44 899999999999
Q ss_pred HHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcc--eeeccCCccEEEE
Q 017815 90 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN--LIGAFYQPQCVLV 167 (365)
Q Consensus 90 ~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~--~~~~~~~P~~vii 167 (365)
++++++| +||||||||++|+||++|..+ ++|+|+|||| ++|||++++.++++.+.++. .....+.|+.+|+
T Consensus 72 ~~~~~~D---~iIavGGGs~~D~aK~ia~~~--~~p~i~VPTT--~gtgse~t~~avi~~~~~~~k~~~~~~~~P~~vi~ 144 (347)
T cd08172 72 AKENGAD---VIIGIGGGKVLDTAKAVADRL--GVPVITVPTL--AATCAAWTPLSVIYDEDGAFLRVEYLKRAPELVLV 144 (347)
T ss_pred HHhcCCC---EEEEeCCcHHHHHHHHHHHHh--CCCEEEecCc--cccCcccceeEEEEcCCCcEeeeccccCCCCEEEE
Confidence 9999998 999999999999999997654 8999999999 58999999998888764432 2222358999999
Q ss_pred ehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHH---HhhhhhhcCC-HHHHHHHH----HHHHHhhHhh--------
Q 017815 168 DTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQE---QNMHKLMARD-PRAFAYAI----KRSCENKAEV-------- 231 (365)
Q Consensus 168 D~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~---~~~~~~~~~~-~~~l~~~i----~~~~~~~~~~-------- 231 (365)
||+++.++|++++++|++|++.|++ |.|++... ...++.++.. .+.+.+.+ .+++++..+.
T Consensus 145 Dp~l~~tlP~~~~~sg~~Dal~h~~---E~~~s~~~~~~~~~~~~~a~~~~~~~~~~L~~~~~~a~~~~~~~~~~~a~~~ 221 (347)
T cd08172 145 DPDLIANSPVRYLVAGIGDTLAKWY---EASAISRSLDSLDLFVQLALQAAKLCRDLLLRDSEQALQDMAAGEVTPAFED 221 (347)
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999998 66665331 1111111111 01111222 2333322221
Q ss_pred -hhcc----hhhhccc---cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 017815 232 -VSLD----EKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAK 303 (365)
Q Consensus 232 -v~~d----~~~~g~r---~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lg 303 (365)
+... ...+|+. ..++.+|.++|+++......+++||++||++++..+.+.. .++.++++++|++++|
T Consensus 222 ~~r~~~~~a~~~ag~~~~~~~~g~~H~l~~~l~~~~~~~~~~HG~~~a~~l~~~~~~~~-----~~~~~~~i~~l~~~lg 296 (347)
T cd08172 222 VVDTIIALAGLVGGFGDEYGRTAGAHAVHNGLTLLPETHDWLHGEKVAYGILVQLALEG-----REAEIEELLPFYRELG 296 (347)
T ss_pred HHHHHHHHhcccccccccCCchHHHHHHHHHhhcCccccccCcchHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCC
Confidence 0001 1122332 2345669999999876321379999999999998877542 2677999999999999
Q ss_pred CCCCCCCC-C---CHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 304 LPTAPPDT-M---TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 304 lp~~~~~~-i---~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
+|+++.+. + +.+++ +.+...... +.......|. +++.+.+++++++
T Consensus 297 lp~~l~~~g~~~~~~~~i-~~ia~~a~~-~~~~~~~~p~----------~~~~~~i~~i~~~ 346 (347)
T cd08172 297 LPLSLAELGLLDPTDEEL-QKVAAFAAS-PKETIHLLPF----------PVTAEQLRQAIKK 346 (347)
T ss_pred CCCCHHHhCCCCCCHHHH-HHHHHHHcC-CcchhhcCCC----------CCCHHHHHHHHHh
Confidence 99999876 4 34555 444432221 1111111232 5678888888765
No 45
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=100.00 E-value=3.8e-39 Score=313.11 Aligned_cols=314 Identities=20% Similarity=0.191 Sum_probs=216.3
Q ss_pred ccceeeecccchh----hhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCL----YYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~~~----l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++++||.+..+. ++.+ ++|++||+|+++++.+.+++.+.|++.| +.+.+++|+ + +|+.++++++++.+
T Consensus 1 p~~i~~G~g~~~~l~~~~~~~--g~~~liv~~~~~~~~~~~~v~~~l~~~~--i~~~~~~~~-~--~p~~~~v~~~~~~~ 73 (349)
T cd08550 1 PARYVCGDNAIKEIAAILSTF--GSKVAVVGGKTVLKKSRPRFEAALAKSI--IVVDVIVFG-G--ECSTEEVVKALCGA 73 (349)
T ss_pred CCeEEECcCHHHHHHHHHHHc--CCeEEEEEChHHHHHHHHHHHHHHHhcC--CeeEEEEcC-C--CCCHHHHHHHHHHH
Confidence 6789999888444 4444 5899999999998888999999999888 655555553 4 46899999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcc--eeeccCCccEEEEe
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN--LIGAFYQPQCVLVD 168 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~--~~~~~~~P~~viiD 168 (365)
+++++| +||||||||++|+||++| +.+++|+|+|||| ++|||++++.++++.+.++. .......|+++|+|
T Consensus 74 ~~~~~d---~IIavGGGs~~D~aK~ia--~~~~~p~i~VPTt--agtgse~t~~avi~~~~~~~k~~~~~~~~P~~~i~D 146 (349)
T cd08550 74 EEQEAD---VIIGVGGGKTLDTAKAVA--DRLDKPIVIVPTI--ASTCAASSNLSVIYSDDGEFARYDFQKRNPDLVLVD 146 (349)
T ss_pred HhcCCC---EEEEecCcHHHHHHHHHH--HHcCCCEEEeCCc--cccCccccceEEEEcCCCceeeeeecCCCCCEEEEC
Confidence 999988 999999999999999996 4679999999999 79999999999887664422 22223589999999
Q ss_pred hhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHH----hhhhhhcCC-HHHHHHHH----HHHHHhhH---------h
Q 017815 169 TDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQ----NMHKLMARD-PRAFAYAI----KRSCENKA---------E 230 (365)
Q Consensus 169 ~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~----~~~~~~~~~-~~~l~~~i----~~~~~~~~---------~ 230 (365)
|+++.++|++++++|++|+|.|++ |.|++...+ ...+.++.. .+.+.+.+ .+++.+.. +
T Consensus 147 p~l~~t~P~~~~a~g~~Dal~h~~---E~~~s~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~a~~~~~~~~~~~a~~~ 223 (349)
T cd08550 147 TEVIAQSPAEYLWSGIADALAKWY---EAEAVIRGREMNGSLAPLMALAVAEACTPTLLEYGVLAVESMEAKRVTQAFEE 223 (349)
T ss_pred hHHHHhCCHHHHHHhHHHHHHHHH---HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 999999999999999999999998 776653321 111111110 01111222 22222111 1
Q ss_pred hhhcchhhhcccc-------ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 017815 231 VVSLDEKESGLRA-------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAK 303 (365)
Q Consensus 231 ~v~~d~~~~g~r~-------~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lg 303 (365)
+.......+|+.. .++..|.++|+++...+..+++||++||++++..+.+. + ..++.++++++|++++|
T Consensus 224 ~~~a~~~~ag~~~~~~~~~~~~~~~Hai~~~l~~~~~~~~~~HG~~~a~~~~~~~~~~---~-~~~~~~~~~~~l~~~lg 299 (349)
T cd08550 224 VVEANIMLAGTVFESGVDYYRLAAAHAVHNGLTALEETHKVLHGEKVAYGVLVQLALE---E-DPREEIEELVEFYRQLG 299 (349)
T ss_pred HHHHHHHHhhhhcccCccCCccHHHHHHHHhhhccccccccccccHHHHHHHHHHHHc---C-CCHHHHHHHHHHHHHCC
Confidence 1111112344432 22334666666654322237899999999987665542 1 13467999999999999
Q ss_pred CCCCCCCC-C--CHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 304 LPTAPPDT-M--TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 304 lp~~~~~~-i--~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
+|+++.++ + +.+++.+...... ..... .-.|. ..+++|++.+++.+
T Consensus 300 lP~~L~~~gi~~~~~~i~~ia~~a~--~~~~~-~~~~p---------~~~t~~~i~~~~~~ 348 (349)
T cd08550 300 LPVTLADLGLEFSDEDIKKVASKAP--ATTET-IHNPF---------GDVTEEDVAQAIIA 348 (349)
T ss_pred CCCcHHHcCCCCCHHHHHHHHHHHc--CCcch-hhcCC---------CCCCHHHHHHHHHh
Confidence 99999887 8 8888755444322 11111 01111 26778888888753
No 46
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=100.00 E-value=3.1e-39 Score=314.45 Aligned_cols=291 Identities=19% Similarity=0.219 Sum_probs=208.8
Q ss_pred cccccceeeecccchhh----hhccCCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHH
Q 017815 12 FFGNSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK 85 (365)
Q Consensus 12 ~~~~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~ 85 (365)
||+|++++||.+..+.+ +++ ++|++||+|+++++. +.+++.+.|++.| +++ .+|++++++|+.+++.+
T Consensus 1 ~~~p~~i~~G~g~l~~l~~~~~~~--g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g--~~~--~~~~~v~~~p~~~~v~~ 74 (357)
T cd08181 1 FYMPTKVYFGENCVEKHGEELAAL--GKRALIVTGKSSAKKNGSLDDVTKALEELG--IEY--EIFDEVEENPSLETIME 74 (357)
T ss_pred CCCCCeEEECCCHHHHHHHHHHHc--CCEEEEEeCCchHhhcCcHHHHHHHHHHcC--CeE--EEeCCCCCCcCHHHHHH
Confidence 68999999999984444 443 599999999998775 5699999999988 654 56788999999999999
Q ss_pred HHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---------------hcCCcEEEeccccccccccccCCceEEecC
Q 017815 86 VFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 150 (365)
Q Consensus 86 ~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---------------~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~ 150 (365)
++++++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.++++.+
T Consensus 75 ~~~~~~~~~~D---~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt--agTGsE~t~~avi~d~ 149 (357)
T cd08181 75 AVEIAKKFNAD---FVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT--AGTGSEVTQYSVLTDH 149 (357)
T ss_pred HHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC--CcchhhhCCeEEEEEC
Confidence 99999999999 999999999999999997642 457999999999 7999999999999876
Q ss_pred C--Ccceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHH
Q 017815 151 L--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCE 226 (365)
Q Consensus 151 ~--~k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 226 (365)
. .|..+. ....|+++|+||+++.++|++++++|++|+|.|++ |.|++...+..++.+... .+.+.+.+.+.+.
T Consensus 150 ~~~~K~~i~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~ha~---E~~~s~~~~~~~d~~a~~ai~l~~~~l~~~~~ 226 (357)
T cd08181 150 EEGTKKGFGHDLIFPKLAFLDPKYTLTLPKEVTINTALDALSHAV---EGYLSNKSTPYSDMLAKEALELFKECLPKLLE 226 (357)
T ss_pred CCCeeeeccCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 344443 33689999999999999999999999999999999 776654322223322211 1223334444443
Q ss_pred hhHh-----hhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHH-------
Q 017815 227 NKAE-----VVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSI------- 291 (365)
Q Consensus 227 ~~~~-----~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~------- 291 (365)
+..+ .+......+|+.. .++..|.++|++... + +++||+++|+.++..+++..... .++.
T Consensus 227 ~~~~~~ar~~~~~as~laG~a~~~~g~~~~Hal~~~l~~~--~-~~~HG~~~ai~lp~vl~~~~~~~--~~~~~~~~~~g 301 (357)
T cd08181 227 NELDEEAREKLMLASTLAGMVIAQTGTTLPHGLGYPLTYE--K-GIPHGLANGIFLPEYLELAKEQI--PEKVFILKLLG 301 (357)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcccchhhHhhcCccccC--C-CCCcHHHHHHHHHHHHHHHhhcC--HHHHHHHHHcC
Confidence 3211 1112234455541 223446666666543 5 79999999999988876543211 1111
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 017815 292 VKRVHNILQQAKLPTAPPDTMTVEMFKSIM 321 (365)
Q Consensus 292 ~~~i~~ll~~lglp~~~~~~i~~~~~~~~l 321 (365)
.+.+.+++++++.|..++..++++++.+..
T Consensus 302 ~~~~~~~~~~~~~~~~l~~gv~~~~~~~~a 331 (357)
T cd08181 302 FGSLDEFLKSLGLLLKVVIKLSDEEIEKWA 331 (357)
T ss_pred cHHHHHHHHHHhHHhCCCCCCCHHHHHHHH
Confidence 123466777777777665346777764443
No 47
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=4.4e-39 Score=313.06 Aligned_cols=315 Identities=17% Similarity=0.156 Sum_probs=219.1
Q ss_pred ccceeeecccc----hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 15 NSDTLLLISNN----CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~----~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++++||.+.- +.++++ ++|++||+|+++.+.+.+++.+.|++.| +++.. ....++|+.++++++++.+
T Consensus 1 p~~i~~G~g~~~~l~~~~~~~--~~r~livt~~~~~~~~~~~v~~~L~~~~--i~~~~---~~~~~~p~~~~v~~~~~~~ 73 (351)
T cd08170 1 PGRYVQGPGALDELGEYLARL--GKRALIIADEFVLDLVGAKIEESLAAAG--IDARF---EVFGGECTRAEIERLAEIA 73 (351)
T ss_pred CCcEEECCCHHHHHHHHHHHh--CCeEEEEECHHHHHHHHHHHHHHHHhCC--CeEEE---EEeCCcCCHHHHHHHHHHH
Confidence 68899999884 444544 5999999999998889999999999988 66532 2344678999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcc--eeeccCCccEEEEe
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN--LIGAFYQPQCVLVD 168 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~--~~~~~~~P~~viiD 168 (365)
++.++| +||||||||++|+||++|. .+++|+|+|||| ++|||++++.++++.+.++. .......|+++|+|
T Consensus 74 ~~~~~D---~IIavGGGS~iD~aK~ia~--~~~~P~iaIPTT--agTgse~t~~avi~~~~~~~k~~~~~~~~P~~ai~D 146 (351)
T cd08170 74 RDNGAD---VVIGIGGGKTLDTAKAVAD--YLGAPVVIVPTI--ASTDAPTSALSVIYTDDGEFEEYLFLPRNPDLVLVD 146 (351)
T ss_pred hhcCCC---EEEEecCchhhHHHHHHHH--HcCCCEEEeCCc--cccCcccccceEEECCCCceeeeeeccCCCCEEEEC
Confidence 999999 9999999999999999964 579999999999 79999999999998765432 22223579999999
Q ss_pred hhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhh---hcCCHH--------HHHHHHHHHHHh---------h
Q 017815 169 TDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKL---MARDPR--------AFAYAIKRSCEN---------K 228 (365)
Q Consensus 169 ~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~---~~~~~~--------~l~~~i~~~~~~---------~ 228 (365)
|+++.++|++++++|++|++.|++ |.|++...+..+.+ .....+ .+.+.+.+++.. +
T Consensus 147 p~l~~t~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~~~ar 223 (351)
T cd08170 147 TDVIAKAPVRFLVAGIGDALATYF---EARACVRSGGPNMFGGKPTLAALALAKLCYETLLEDGVAALAAVERGVVTPAL 223 (351)
T ss_pred hHHHhhCCHHHHHHHHHHHHHHHH---HHHHHHHccCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999999999 66655432211100 000011 111222222211 1
Q ss_pred Hhhhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 017815 229 AEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLP 305 (365)
Q Consensus 229 ~~~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp 305 (365)
.++.......+|+.. .++..|.++|+|+......+++||++||++.+....+. ...++.++++++|++++|+|
T Consensus 224 ~~~~~a~~~laG~a~~~~g~~~~Hai~h~l~~~~~~~~~~HG~~~a~~~~~~~~~~----~~~~~~~~~i~~l~~~lglP 299 (351)
T cd08170 224 ERVVEANTLLSGLGFESGGLAAAHAIHNGLTALPETHHALHGEKVAFGTLVQLVLE----NRPAEEIEEVIDFCRAVGLP 299 (351)
T ss_pred HHHHHHHHHHhhhhhccCCcHHHHHHHHhhhcccccccccccchHHHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCC
Confidence 111111123456542 23345888888887532137999999998776655432 12356799999999999999
Q ss_pred CCCCCC-CCH---HHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHHH
Q 017815 306 TAPPDT-MTV---EMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 362 (365)
Q Consensus 306 ~~~~~~-i~~---~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~ 362 (365)
+++.+. ++. +++.+......+ +......+|. ++++|.+.+++++.
T Consensus 300 ~~l~~~gi~~~~~~~~~~~a~~~~~--~~~~~~n~p~----------~~t~e~i~~i~~~~ 348 (351)
T cd08170 300 VTLADLGLEDVTEEELRKVAEAACA--PGETIHNMPF----------PVTPEDVYDAILAA 348 (351)
T ss_pred CcHHHcCCCCCCHHHHHHHHHHHhC--ChhhhhcCCC----------CCCHHHHHHHHHHH
Confidence 999876 553 665443332211 1111100132 67888888888763
No 48
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=100.00 E-value=4.4e-39 Score=315.17 Aligned_cols=293 Identities=20% Similarity=0.249 Sum_probs=215.7
Q ss_pred ccceeeecccchhh----hhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 89 (365)
Q Consensus 15 ~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~ 89 (365)
|++++||.+..+.+ +++ +.+|++||+|+++.+ .+.+++.+.|++.| +++ .+|.+.+++|+.+++.+++++
T Consensus 1 P~~i~~G~g~l~~l~~~l~~~-~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~--~~~--~~~~~~~~~p~~~~v~~~~~~ 75 (370)
T cd08551 1 PTRIIFGAGAIEKLGEEIKNL-GGRKALIVTDPGLVKTGVLDKVIDSLKEAG--IEV--VIFDGVEPNPTLSNVDAAVAA 75 (370)
T ss_pred CCeEEECcCHHHHHHHHHHHc-CCCeEEEEeCcchhhCccHHHHHHHHHHcC--CeE--EEECCCCCCCCHHHHHHHHHH
Confidence 78899999884444 444 258999999999988 58999999999887 554 557788999999999999999
Q ss_pred HHHcCCCCcceEEEecCchHhhHHHHHHHHh----------------hcCCcEEEeccccccccccccCCceEEecCC--
Q 017815 90 AIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHRL-- 151 (365)
Q Consensus 90 ~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----------------~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~-- 151 (365)
+++.++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.++++.+.
T Consensus 76 ~~~~~~d---~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--~gtgse~t~~avi~d~~~~ 150 (370)
T cd08551 76 YREEGCD---GVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTT--AGTGSEVTPFAVITDEETG 150 (370)
T ss_pred HHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCC--CcchhhcCCeEEEEECCCC
Confidence 9999998 999999999999999998776 347999999999 69999999999998763
Q ss_pred Ccceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhH
Q 017815 152 GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKA 229 (365)
Q Consensus 152 ~k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 229 (365)
.|..+. ....|+++|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+.+++.+..
T Consensus 151 ~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~a~~~Dal~h~~---E~~~s~~~~~~s~~~a~~~~~~~~~~l~~~~~~~~ 227 (370)
T cd08551 151 EKYGIASPELLPDVAILDPELTYTLPPALTAATGMDALTHAI---EAYVSRKANPISDALAIKAIRLIAKNLPKAVKEGG 227 (370)
T ss_pred eeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344443 34699999999999999999999999999999998 666653222122222111 1223333433333211
Q ss_pred h-----hhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH------------HHHcCCC--
Q 017815 230 E-----VVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWI-- 287 (365)
Q Consensus 230 ~-----~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l------------~~~~g~~-- 287 (365)
+ .+......+|+.. .++..|.++|+|+.. + +++||+++|+.++..+++ .+.++..
T Consensus 228 ~~~ar~~l~~as~laG~a~~~~~~g~~H~i~~~l~~~--~-~i~HG~~~ai~lp~~l~~~~~~~~~~~~~l~~~~~~~~~ 304 (370)
T cd08551 228 DLEAREKMALASTLAGMAFSNAGLGAVHAMAHPLGAL--Y-HIPHGLANAILLPHVMRFNAEAIPEKYADIARAMGKVSG 304 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcchHHHHHHhhHHhhC--C-CCcHHHHHHHHHHHHHHhccccCHHHHHHHHHHhCCcCC
Confidence 1 1111233455431 234457777777654 4 799999999999887753 2222211
Q ss_pred ------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHh
Q 017815 288 ------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAV 323 (365)
Q Consensus 288 ------~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~ 323 (365)
.++.++++.+|++++|+|+++.+. ++.+++.+....
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~lglp~~L~e~gi~~~~~~~ia~~ 347 (370)
T cd08551 305 GSDDEAANAAIAAIRKLNKELGIPTSLADLGVKEEDIDKLAEL 347 (370)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHH
Confidence 134588999999999999999987 888887555443
No 49
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=100.00 E-value=4.9e-39 Score=315.13 Aligned_cols=284 Identities=21% Similarity=0.268 Sum_probs=211.7
Q ss_pred ccceeeecccchhh----hhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 89 (365)
Q Consensus 15 ~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~ 89 (365)
|++++||.+..+.+ +++ +++|++||+|+++.+. +.+++.+.|++.| +++ .+|.+.++||+.++++++++.
T Consensus 1 P~~i~~G~g~~~~l~~~~~~~-~~~r~livt~~~~~~~g~~~~v~~~L~~~g--i~~--~~~~~v~~~p~~~~v~~~~~~ 75 (375)
T cd08194 1 PRTIIIGEGAVDETGAVLADL-GGKRPLIVTDKVMVKLGLVDKLTDSLKKEG--IES--AIFDDVVSEPTDESVEEGVKL 75 (375)
T ss_pred CCeEEECcCHHHHHHHHHHHc-CCCeEEEEcCcchhhcchHHHHHHHHHHCC--CeE--EEECCCCCCcCHHHHHHHHHH
Confidence 68899999884444 444 2589999999998876 7899999999988 654 457889999999999999999
Q ss_pred HHHcCCCCcceEEEecCchHhhHHHHHHHH----------------hhcCCcEEEeccccccccccccCCceEEecCC--
Q 017815 90 AIESRLDRRCTFVALGGGVIGDMCGYAAAS----------------YLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL-- 151 (365)
Q Consensus 90 ~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~----------------~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~-- 151 (365)
++++++| +||||||||++|+||++|.. +..++|+|+|||| ++|||++++.++++.+.
T Consensus 76 ~~~~~~D---~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt--agtGsE~t~~avi~~~~~~ 150 (375)
T cd08194 76 AKEGGCD---VIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT--AGTGSEVTRFTVITDTKTD 150 (375)
T ss_pred HHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC--CccccccCCeEEEEECCCC
Confidence 9999999 99999999999999999864 2457899999999 68999999999987653
Q ss_pred Cccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhH
Q 017815 152 GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKA 229 (365)
Q Consensus 152 ~k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 229 (365)
.|..+ +....|+++|+||+++.++|++++++|++|++.|++ |.|++...+..++.++.. .+.+.+.+.+++.+..
T Consensus 151 ~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~i---E~~~s~~~~~~s~~~a~~a~~li~~~l~~a~~~~~ 227 (375)
T cd08194 151 EKMLLKGLALLPKAAIVDPELTLTSPPRVTAATGIDALTHAI---EAYVSRKAQPMTDLFALSAIKLIGKNLRTAYLNPD 227 (375)
T ss_pred ceEEEeCCcccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 24333 455699999999999999999999999999999999 777654322233332221 1233344444444322
Q ss_pred hh-----hhcchhhhccccccCc----chhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HHHHcCCCC
Q 017815 230 EV-----VSLDEKESGLRATLNL----GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWID 288 (365)
Q Consensus 230 ~~-----v~~d~~~~g~r~~l~~----gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~~~~g~~~ 288 (365)
+. +......+|+. +.+. .|.++|++... + +++||+++|+.++..++ +++.+|.-+
T Consensus 228 ~~~ar~~l~~as~laG~a-~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~~~ 303 (375)
T cd08194 228 NREAREEMMLGATEAGIA-FSNASVALVHGMSRPIGAL--F-HVPHGLSNAMLLPAVTEFSLPSAPERYADIARAMGEAN 303 (375)
T ss_pred CHHHHHHHHHHHHHHHHH-HhchhHHHHHHhhhhhhhC--C-CCChHHHHHHHHHHHHHhhcccCHHHHHHHHHHhCCCC
Confidence 11 11223445654 2233 46666666554 5 79999999999888765 444455421
Q ss_pred ---------HHHHHHHHHHHHHcCCCCCCCCC-CCHHH
Q 017815 289 ---------DSIVKRVHNILQQAKLPTAPPDT-MTVEM 316 (365)
Q Consensus 289 ---------~~~~~~i~~ll~~lglp~~~~~~-i~~~~ 316 (365)
++.++++++|++++|+|. +.+. ++.++
T Consensus 304 ~~~~~~~~~~~~~~~i~~l~~~~glP~-L~~~gv~~~~ 340 (375)
T cd08194 304 EGDSDREAAEKLIEALKELNRELEVPT-LREYGIDKDA 340 (375)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCC-HHhcCCChHh
Confidence 245788999999999995 8877 77766
No 50
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=100.00 E-value=4.8e-39 Score=315.05 Aligned_cols=285 Identities=20% Similarity=0.212 Sum_probs=210.8
Q ss_pred ccceeeecccchhh----hhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
|++++||.+..+.+ +++ ++|++||||+++. +.+++.+.|++.| +++.+ |+ +.++|+.+.+.++++.+
T Consensus 1 P~~i~~G~g~~~~l~~~l~~~--~~r~livtd~~~~--~~~~v~~~L~~~g--~~~~~--~~-~~~~p~~~~v~~~~~~~ 71 (374)
T cd08183 1 PPRIHFGRGVAKELPALAAEL--GRRVLLVTGASSL--RAAWLIEALRAAG--IEVTH--VV-VAGEPSVELVDAAVAEA 71 (374)
T ss_pred CCeEEECcCHHHHHHHHHHHc--CCcEEEEECCchH--HHHHHHHHHHHcC--CeEEE--ec-CCCCcCHHHHHHHHHHH
Confidence 68899999884444 444 5899999999887 7888999999988 76543 43 55689999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhh--------------------cCCcEEEeccccccccccccCCceEEecC
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYL--------------------RGVSFIQIPTTVMAQVDSSVGGKTGINHR 150 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~--------------------~g~p~i~IPTTl~A~~~s~~~~~~~i~~~ 150 (365)
+++++| +||||||||++|+||++|..+. +++|+|+|||| ++|||+++..++++.+
T Consensus 72 ~~~~~D---~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--agTGSE~t~~avi~~~ 146 (374)
T cd08183 72 RNAGCD---VVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT--AGTGSEVTKNAVISVP 146 (374)
T ss_pred HhcCCC---EEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC--CchhHHhCCeEEEEec
Confidence 999999 9999999999999999987541 46899999999 7999999999999875
Q ss_pred C--Cccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHH
Q 017815 151 L--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCE 226 (365)
Q Consensus 151 ~--~k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 226 (365)
. .|..+ ..+..|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++.. .+.+.+.+.+++.
T Consensus 147 ~~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~aatg~Dal~ha~---E~~~s~~~~p~sd~~a~~ai~~i~~~l~~a~~ 223 (374)
T cd08183 147 GAGFKVSLRHPRMLPDVAIVDPELTLSCPRSVTAASGLDALTQLL---EPYLSPRANPLTDALCRSGLPRGARALRRACE 223 (374)
T ss_pred CCCeeEEeecccccCCEEEEChHHhcCCChhhHHHHHHHHHHHHH---HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 35544 345689999999999999999999999999999999 777654333333333222 1223344555544
Q ss_pred hhHhh-----hhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHH---------------
Q 017815 227 NKAEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYR--------------- 283 (365)
Q Consensus 227 ~~~~~-----v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~--------------- 283 (365)
+..+. +......+|+.. .++..|.++|++... + +++||+++|+.+|..+++...
T Consensus 224 ~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~ 300 (374)
T cd08183 224 NGEDAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGL--F-DAPHGAICATLLPPVLAANIRALRQRGPGNPALAAY 300 (374)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhchhhcC--C-CCChHHHHHHHHHHHHHHhhhhCchhhhhhhhHHHH
Confidence 32221 111234456542 223457777776654 5 799999999999987764311
Q ss_pred ------cCCCC----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHH
Q 017815 284 ------LGWID----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSI 320 (365)
Q Consensus 284 ------~g~~~----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~ 320 (365)
++... ++.++++++|++++|+| ++.+. ++.+++...
T Consensus 301 ~~~~~~~~~~~~~~a~~~~~~l~~l~~~lglP-~L~e~gv~~~~~~~i 347 (374)
T cd08183 301 REVAGLLTGNLEAAADDLVEWLEHWVDELGLP-RLSDYGLTPDDLDAV 347 (374)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHcCCC-ChhhcCCCHHHHHHH
Confidence 12111 24688899999999999 99988 888887433
No 51
>PRK15138 aldehyde reductase; Provisional
Probab=100.00 E-value=7.1e-39 Score=314.53 Aligned_cols=325 Identities=17% Similarity=0.189 Sum_probs=228.6
Q ss_pred cccccccccceeeecccchhhhhcc-CCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHH
Q 017815 8 YKDRFFGNSDTLLLISNNCLYYRHV-QGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLM 84 (365)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~ 84 (365)
.++.|+.|++++||.+..+.+.++. .++|++||||+...+. +.+++.+.|+ | +++ .+|+++++||+.++++
T Consensus 2 ~~f~~~~P~~i~~G~g~~~~l~~~l~~~~~~livt~~~~~~~~g~~~~v~~~L~--~--~~~--~~f~~v~~~p~~~~v~ 75 (387)
T PRK15138 2 NNFNLHTPTRILFGKGAIAGLREQIPADARVLITYGGGSVKKTGVLDQVLDALK--G--MDV--LEFGGIEPNPTYETLM 75 (387)
T ss_pred CCcEEeCCceEEECcCHHHHHHHHHhcCCeEEEECCCchHHhcCcHHHHHHHhc--C--CeE--EEECCccCCCCHHHHH
Confidence 4578999999999999855554432 2489999998765553 6788999895 4 444 5678899999999999
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh-------------------cCCcEEEeccccccccccccCCce
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-------------------RGVSFIQIPTTVMAQVDSSVGGKT 145 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~-------------------~g~p~i~IPTTl~A~~~s~~~~~~ 145 (365)
++++.+++.++| +||||||||++|+||++|.... ..+|+|+|||| |+|||++++.+
T Consensus 76 ~~~~~~~~~~~D---~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTT--aGTGSE~t~~a 150 (387)
T PRK15138 76 KAVKLVREEKIT---FLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTL--PATGSESNAGA 150 (387)
T ss_pred HHHHHHHHcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecC--CccccccCCCE
Confidence 999999999999 9999999999999999986431 13799999999 79999999999
Q ss_pred EEecCC--Cccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHH-hhhhhhcCC-HHHHHHH
Q 017815 146 GINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQ-NMHKLMARD-PRAFAYA 220 (365)
Q Consensus 146 ~i~~~~--~k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~-~~~~~~~~~-~~~l~~~ 220 (365)
+++... .|..+ .....|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+ ..++.++.. .+.+.+.
T Consensus 151 vit~~~~~~K~~~~~~~~~P~~aivDP~l~~~~P~~~taatg~DAl~hai---E~y~s~~~~~~~td~~A~~a~~~i~~~ 227 (387)
T PRK15138 151 VISRKTTGDKQAFHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTV---EQYVTYPVDAKIQDRFAEGILLTLIEE 227 (387)
T ss_pred EEEecCCCeeeeecCcchheeEEEECcHHhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCChHHHHHHHHHHHHHHHH
Confidence 997542 24443 345689999999999999999999999999999999 776653111 122222211 1223344
Q ss_pred HHHHHHhhHhhhh-----cchhhhcccc---ccC---cchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHH---------
Q 017815 221 IKRSCENKAEVVS-----LDEKESGLRA---TLN---LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM--------- 280 (365)
Q Consensus 221 i~~~~~~~~~~v~-----~d~~~~g~r~---~l~---~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l--------- 280 (365)
+.+++.+..+... .....+|+.. .++ ..|.++|++... | +++||.++|+.+|..+++
T Consensus 228 l~~a~~~~~~~~aR~~m~~as~lag~a~~~~g~~~~~~~Hal~h~lg~~--~-~i~HG~~~ai~lP~vl~~~~~~~~~k~ 304 (387)
T PRK15138 228 GPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM--H-GLDHAQTLAIVLPALWNEKRDTKRAKL 304 (387)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhhhhcchhhhc--c-CCchHHHHHHHHHHHHHHhhhhCHHHH
Confidence 4444443322211 1123344431 122 348888888875 5 799999999999987653
Q ss_pred ---HHHc-CCC---C----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEcc
Q 017815 281 ---SYRL-GWI---D----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTG 348 (365)
Q Consensus 281 ---~~~~-g~~---~----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~ 348 (365)
++.+ +.. + +..++++++|++++|+|+++.+. ++++++.+......+ ........| .
T Consensus 305 ~~~a~~~~~~~~~~~~~~~~~~i~~i~~l~~~lg~p~~L~~~gv~~~d~~~~a~~a~~--~~~~~~~np----------~ 372 (387)
T PRK15138 305 LQYAERVWNITEGSDDERIDAAIAATRNFFEQMGVPTRLSDYGLDGSSIPALLKKLEE--HGMTQLGEH----------H 372 (387)
T ss_pred HHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHh--cCcccCCCC----------C
Confidence 2223 211 1 24578899999999999999988 888887544433211 111000012 2
Q ss_pred CCCHHHHHHHHHH
Q 017815 349 DYDRKALDDTLYA 361 (365)
Q Consensus 349 ~~~~~~l~~~~~~ 361 (365)
.++++++.+.+++
T Consensus 373 ~~~~~~i~~il~~ 385 (387)
T PRK15138 373 DITLDVSRRIYEA 385 (387)
T ss_pred CCCHHHHHHHHHh
Confidence 6788888888764
No 52
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.1e-38 Score=300.77 Aligned_cols=319 Identities=22% Similarity=0.251 Sum_probs=233.0
Q ss_pred ccccceeeeccc----chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHH
Q 017815 13 FGNSDTLLLISN----NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 88 (365)
Q Consensus 13 ~~~~~~~~~~~~----~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~ 88 (365)
-.|.+++.|.+. ++++++.. .++++||+|+++++.+.+++.+.|...| +.+ .....+++ +.++++++..
T Consensus 6 ~~P~~~~~G~~~i~~~~~~~~~~~-~~~~lvv~g~~~~~~~~~~~~~~l~~~g--~~~--~~~~~~~a--~~~ev~~~~~ 78 (360)
T COG0371 6 ILPREYIQGKGAINKLLEVLLKLG-LSRALVVTGENTYAIAGEKVEKSLKDEG--LVV--HVVFVGEA--SEEEVERLAA 78 (360)
T ss_pred ecCceEEECCChhhhHHHHHHhcc-CCceEEEEChhHHHHHHHHHHHHhcccC--cce--eeeecCcc--CHHHHHHHHH
Confidence 345666666665 55666654 5899999999999999999999999998 643 33345665 9999999999
Q ss_pred HHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCc-eEEecCCCcceeeccCCccEEEE
Q 017815 89 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGK-TGINHRLGKNLIGAFYQPQCVLV 167 (365)
Q Consensus 89 ~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~-~~i~~~~~k~~~~~~~~P~~vii 167 (365)
.+.+.++| +|||||||+++|+||++ ++.+++|+|.|||+ |++|+.+|+. ++++.+.+.+..-..-.|.+||+
T Consensus 79 ~~~~~~~d---~vIGVGGGk~iD~aK~~--A~~~~~pfIsvPT~--AS~Da~~Sp~aSv~~~~~g~~~~~~~~~P~~viv 151 (360)
T COG0371 79 EAGEDGAD---VVIGVGGGKTIDTAKAA--AYRLGLPFISVPTI--ASTDAITSPVASVIYNGKGDKYSFLAKAPDAVIV 151 (360)
T ss_pred HhcccCCC---EEEEecCcHHHHHHHHH--HHHcCCCEEEecCc--cccccccCCceeeEEcCCCceeeeecCCCcEEEE
Confidence 88877777 99999999999999998 57899999999999 7999999995 44454444222212248999999
Q ss_pred ehhhhCCCCHHHHHhcHHHHH-HHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHh-----------hhhcc
Q 017815 168 DTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAE-----------VVSLD 235 (365)
Q Consensus 168 D~~l~~tlP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~-----------~v~~d 235 (365)
|++++..+|.|+++||++|+| |.....||.+-..+.. . ........+.++..+.+..... .+.++
T Consensus 152 D~evI~~AP~r~L~AGiGD~lakw~e~~dw~~a~~~~~--e-~~~~~a~~la~~~~~~~~~~~~~i~~~~~~~~~~~vea 228 (360)
T COG0371 152 DTEVIAAAPRRLLAAGIGDALAKWTEARDWKLAHRLTG--E-GYSEAAAALAKMCAKTLIEAAEEIKNALEEAVRPLVEA 228 (360)
T ss_pred cHHHHHhChHHHHHhcchHhhhhHHHHHHHHHhccccc--c-hhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999999999999 7766666665432211 0 0111112233333333222111 11122
Q ss_pred hhhhcc--------ccccCcchhHHHHhhhcc-CCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHcCC
Q 017815 236 EKESGL--------RATLNLGHTFGHAIETGF-GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVK--RVHNILQQAKL 304 (365)
Q Consensus 236 ~~~~g~--------r~~l~~gH~~~Hale~~~-~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~--~i~~ll~~lgl 304 (365)
..++|. |+.++..|.|.|+|+... ..++.+|||+||+|.++++++..+ ..+.++ +++++++++|+
T Consensus 229 lI~sg~~m~g~G~s~p~sgaeH~~hh~Lt~l~~~~h~~lHGekVa~Gtlv~~~L~~~----~~~~~~~~~i~~~~~~~gl 304 (360)
T COG0371 229 LIESGTAMSGLGSSRPASGAEHAFHHGLTMLPPETHHALHGEKVAYGTLVQLYLHGK----NWEEIEARKIRDFLKKVGL 304 (360)
T ss_pred HHHhcceEEeccCCCCccHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHhcC----chhhhhHHHHHHHHHHcCC
Confidence 334443 345677899999999986 345789999999999999998643 122333 59999999999
Q ss_pred CCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 305 PTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 305 p~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
|+++.|+ ++.++..++++..++.|+.+.++ +..+ ..++.|.+.+++++
T Consensus 305 Pttl~elgl~~~~~~eal~vAh~~r~~r~TI--l~~~-------~~~t~e~~~~a~~~ 353 (360)
T COG0371 305 PTTLAELGLDDDEVIEALTVAHAIRPERETI--LGMP-------FGLTPEAARAALEA 353 (360)
T ss_pred CcCHHHcCCCchhHHHHHHHHHHhCCCCccc--ccCC-------CCCCHHHHHHHHHH
Confidence 9999998 99888899999999888777554 2221 26778888888764
No 53
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=100.00 E-value=4.6e-37 Score=296.93 Aligned_cols=279 Identities=10% Similarity=0.092 Sum_probs=205.1
Q ss_pred cceeeecccchh----hhhcc-CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 16 SDTLLLISNNCL----YYRHV-QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 16 ~~~~~~~~~~~~----l~~~~-~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
++++||.+..+. +++++ ..++++||+|+.+.+ +++.+.|+..| +++ .+|.+.++||+.++++++.+.+
T Consensus 2 ~~i~fG~g~l~~l~~~~~~~g~~~~~~lvvtd~~~~~---~~v~~~L~~~g--~~~--~~f~~v~~nPt~~~v~~~~~~~ 74 (347)
T cd08184 2 PRYIFGRGSFDQLNDLLAPKRKNKDPAVFFVDDVFQG---KDLISRLPVES--EDM--IIWVDATEEPKTDQIDALTAQV 74 (347)
T ss_pred CeEEECcCHHHHHHHHHHHcCCCCCeEEEEECcchhh---hHHHHHHHhcC--CcE--EEEcCCCCCcCHHHHHHHHHHH
Confidence 477889887444 44442 126788989988765 67888898877 654 4567899999999999999999
Q ss_pred HHc---CCCCcceEEEecCchHhhHHHHHHHHhh----------------cCCcEEEeccccccccccccCCceEEecCC
Q 017815 91 IES---RLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGINHRL 151 (365)
Q Consensus 91 ~~~---~~dr~~~IIaiGGGsv~D~ak~vA~~~~----------------~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~ 151 (365)
+++ ++| +||||||||++|+||++|.... ..+|+|+|||| |+|||++++.++++.++
T Consensus 75 ~~~~~~~~D---~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTT--aGTGSE~t~~aVit~~~ 149 (347)
T cd08184 75 KSFDGKLPC---AIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTL--SGTGAEASRTAVLMGPE 149 (347)
T ss_pred HhhCCCCCC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCC--CccccccCCcEEEEeCC
Confidence 988 888 9999999999999999986542 23789999999 79999999999998776
Q ss_pred Cccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHH-HHh--
Q 017815 152 GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRS-CEN-- 227 (365)
Q Consensus 152 ~k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~-- 227 (365)
.|..+ .....|+.+|+||+++.++|++++++++.|++.|++ |.|++...+..++.++.. ..+++.+. +..
T Consensus 150 ~K~~i~~~~~~P~~aIvDp~l~~s~P~~~ta~tGiDal~Hai---Eay~s~~~~p~td~~A~~---ai~li~~~~l~~~~ 223 (347)
T cd08184 150 RKLGMNSDFTMFDQIILDPELTAGVPRDQYFYTGMDCYIHCI---ESLTGTYRNEVSDAYAEK---ALELCRQVFLSDDM 223 (347)
T ss_pred ceeeeecCCcCCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHH---HHHHHHHhhhcccc
Confidence 55554 345689999999999999999999999999999998 776654333233332211 11222222 110
Q ss_pred --h--Hhhhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 017815 228 --K--AEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQ 300 (365)
Q Consensus 228 --~--~~~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~ 300 (365)
. .+.+......+|+.. .++..|.++|+|... + +++||+++|+.++..+++. ++.++++.++++
T Consensus 224 ~d~~ar~~m~~As~laG~a~~~~g~g~~Hal~h~L~~~--~-~~~HG~~~av~lp~v~~~~-------~~~~~~~~~~~~ 293 (347)
T cd08184 224 MSEENDDKLMMASYLGGMSIANSQVGVCHAASYGLSLH--L-GYHHGIANCIAFNVLEEFY-------PEGVDEFRLMMK 293 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcccccchhhchHhhcC--C-CCChHHHHHHHHHHHHHHh-------hhhHHHHHHHHH
Confidence 0 111122234566642 346679999999876 5 7899999999999877663 345677888887
Q ss_pred H--cCCCCCCCCCCCHHHHHHHHH
Q 017815 301 Q--AKLPTAPPDTMTVEMFKSIMA 322 (365)
Q Consensus 301 ~--lglp~~~~~~i~~~~~~~~l~ 322 (365)
. +|+|.++.+-++++++.+...
T Consensus 294 ~~~~glp~~L~~gv~~~~~~~~~~ 317 (347)
T cd08184 294 KHKIDLPKGICASLTDAQMDRMVA 317 (347)
T ss_pred HcCCCCchHHHcCCCHHHHHHHHH
Confidence 7 999999987788888754443
No 54
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=100.00 E-value=9.4e-38 Score=305.38 Aligned_cols=293 Identities=23% Similarity=0.287 Sum_probs=208.7
Q ss_pred ccceeeecccchhhhhc-cCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLYYRH-VQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~-~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
|++++||.+.-+.+.+. ...+|++||||+.+.+. +.+++.+.|+++| +++ .+|.+.+++|+.++++++.+++++
T Consensus 1 P~~i~~G~g~l~~l~~~l~~~gr~lvVt~~~~~~~~~~~~v~~~L~~~~--i~~--~~~~~~~~~p~~~~v~~~~~~~~~ 76 (366)
T PF00465_consen 1 PTKIIFGRGALEELGEELKRLGRVLVVTDPSLSKSGLVDRVLDALEEAG--IEV--QVFDGVGPNPTLEDVDEAAEQARK 76 (366)
T ss_dssp ESEEEESTTGGGGHHHHHHCTTEEEEEEEHHHHHHTHHHHHHHHHHHTT--CEE--EEEEEESSS-BHHHHHHHHHHHHH
T ss_pred CCcEEEccCHHHHHHHHHHhcCCEEEEECchHHhCccHHHHHHHHhhCc--eEE--EEEecCCCCCcHHHHHHHHHHHHh
Confidence 78999999985555442 21129999999966665 8999999999988 665 456667889999999999999999
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHhhcC-----------------CcEEEeccccccccccccCCceEEecCCC--c
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRG-----------------VSFIQIPTTVMAQVDSSVGGKTGINHRLG--K 153 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g-----------------~p~i~IPTTl~A~~~s~~~~~~~i~~~~~--k 153 (365)
+++| +||||||||++|+||.++..+... +|+|+|||| ++|||++++.++++.+.+ |
T Consensus 77 ~~~D---~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt--~gtGsE~t~~avi~d~~~~~k 151 (366)
T PF00465_consen 77 FGAD---CIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTT--AGTGSEVTPYAVIYDEEGGRK 151 (366)
T ss_dssp TTSS---EEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESS--SSSSGCCSSEEEEEETTTTEE
T ss_pred cCCC---EEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCC--cccccccccccccccccccee
Confidence 9999 999999999999999998766422 899999999 699999999999986543 4
Q ss_pred ceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhHhh
Q 017815 154 NLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKAEV 231 (365)
Q Consensus 154 ~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 231 (365)
..+. ....|+.+|+||+++.++|++++++|+.|+|.|++ |.|++...+..++.+... .+.+.+.+.+.+.+..+.
T Consensus 152 ~~~~~~~~~P~~~i~Dp~l~~~lP~~~~~~~~~dal~hai---E~~~s~~~~~~s~~~a~~ai~li~~~l~~~~~~~~~~ 228 (366)
T PF00465_consen 152 LSIRSPKLYPDAAILDPELTATLPPRLTASGGLDALAHAI---EAYLSPKANPLSDALALQAIRLIFENLPRAVADPEDL 228 (366)
T ss_dssp EEEEEGGGS-SEEEEEGGGGTTS-HHHHHHHHHHHHHHHH---HHHHSTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccccCcccCcceeEecHHhhcCCCHHHHhhhHHHHHHHHH---HHHhhcccCcccHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3343 34589999999999999999999999999999999 777653322223322211 122334444443332221
Q ss_pred h-----hcchhhhccc---cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHH------------HHcCCC----
Q 017815 232 V-----SLDEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS------------YRLGWI---- 287 (365)
Q Consensus 232 v-----~~d~~~~g~r---~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~------------~~~g~~---- 287 (365)
. ......+|+. ...+..|.++|++... + +++||+++++.++..+++. +.+|..
T Consensus 229 ~ar~~l~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~v~HG~~~a~~lp~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 305 (366)
T PF00465_consen 229 EARENLALASTLAGLAISNAGTGAAHALSHALGAR--Y-GVPHGEAVAILLPHVLRFNAPSAPEKLARLAKALGVDTEGG 305 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHH--H-TS-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTHCTTS-
T ss_pred HHHHHHHHHHhhccccccccccccccccccccccc--e-eecchhhhhcccHHHHHHHHHhhHHHHHHHHHhcCCCccCC
Confidence 1 1123345553 2345668888888865 4 7999999999999887533 334321
Q ss_pred -----CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHH
Q 017815 288 -----DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMA 322 (365)
Q Consensus 288 -----~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~ 322 (365)
.++.++++.+|++++|+|.++.+. ++++++.+...
T Consensus 306 ~~~~~a~~~~~~l~~l~~~lglp~~l~~~gi~~~~l~~ia~ 346 (366)
T PF00465_consen 306 SAEEAADDAIDELRALLRSLGLPTRLSDLGIDEEDLDEIAE 346 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SSGGGGT-TGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCHHHcCCCHHHHHHHHH
Confidence 145799999999999999999988 88776654433
No 55
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-36 Score=326.15 Aligned_cols=292 Identities=20% Similarity=0.248 Sum_probs=219.9
Q ss_pred ccccccceeeecccchhhhhcc-CCceEEEEEccCchHH-HHHHHHHHHh--hCCCCceEEEEEeCCCCCCCCHHHHHHH
Q 017815 11 RFFGNSDTLLLISNNCLYYRHV-QGKKVLVVTNNTVAPL-YLDKVTDALT--RGNPNVSVENVILPDGENYKNMDTLMKV 86 (365)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~livtd~~~~~~-~~~~v~~~L~--~~g~~i~v~~~~~~~~e~~~~~~~v~~~ 86 (365)
.|+.|++++||.+..+.+.+.. +++|+|||+|+++.+. +.+++.+.|+ ..| ++ +.+|++++++|+.++++++
T Consensus 456 ~~~~P~~i~~G~g~l~~l~~~l~~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~--i~--~~~~~~v~~np~~~~v~~~ 531 (862)
T PRK13805 456 WFKVPKKIYFERGSLPYLLDELDGKKRAFIVTDRFMVELGYVDKVTDVLKKRENG--VE--YEVFSEVEPDPTLSTVRKG 531 (862)
T ss_pred eeecCCeEEECCCHHHHHHHHhcCCCEEEEEECcchhhcchHHHHHHHHhcccCC--Ce--EEEeCCCCCCcCHHHHHHH
Confidence 3899999999999866665432 3689999999998887 8999999998 666 54 4678899999999999999
Q ss_pred HHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---------------------------hcCCcEEEecccccccccc
Q 017815 87 FDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---------------------------LRGVSFIQIPTTVMAQVDS 139 (365)
Q Consensus 87 ~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---------------------------~~g~p~i~IPTTl~A~~~s 139 (365)
++.+++.++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||
T Consensus 532 ~~~~~~~~~D---~IIaiGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT--agTGS 606 (862)
T PRK13805 532 AELMRSFKPD---TIIALGGGSPMDAAKIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTT--SGTGS 606 (862)
T ss_pred HHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCC--CCccc
Confidence 9999999998 999999999999999998632 246899999999 69999
Q ss_pred ccCCceEEecCCC--ccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HH
Q 017815 140 SVGGKTGINHRLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PR 215 (365)
Q Consensus 140 ~~~~~~~i~~~~~--k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~ 215 (365)
++++.++++.+.. |..+ ..+..|+.+|+||+++.++|++++++|++|+|+|++ |.|++...+..++.++.. .+
T Consensus 607 E~t~~avi~~~~~~~K~~~~~~~~~P~~~ivDp~l~~tlP~~~taa~g~Dal~ha~---Eay~s~~~~~~sd~~a~~ai~ 683 (862)
T PRK13805 607 EVTPFAVITDDKTGVKYPLADYELTPDVAIVDPNLVMTMPKSLTADTGIDALTHAL---EAYVSVMASDYTDGLALQAIK 683 (862)
T ss_pred ccCCeEEEEecCCCeEEEeeCCCccCCEEEECHHHHccCCHHHHHHHHHHHHHHHH---HHHHccCCCHHHHHHHHHHHH
Confidence 9999999976532 3333 345799999999999999999999999999999999 777654332233332221 12
Q ss_pred HHHHHHHHHHHhh-Hhh-----hhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHH-----
Q 017815 216 AFAYAIKRSCENK-AEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS----- 281 (365)
Q Consensus 216 ~l~~~i~~~~~~~-~~~-----v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~----- 281 (365)
.+.+.+.+++.+. .+. +......+|+.. .++..|.++|++... + +++||+++|+.+|..+++.
T Consensus 684 li~~~L~~a~~~~~~d~~ar~~m~~As~laG~a~~~~~~g~~Hal~~~lg~~--~-~v~HG~~~aillP~vl~~n~~~~~ 760 (862)
T PRK13805 684 LVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGAE--F-HIPHGRANAILLPHVIRYNATDPP 760 (862)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhcC--c-CCChHHHHHHHHHHHHHHhhhccc
Confidence 3334444444432 111 112234455542 234568888888765 4 7999999999999766543
Q ss_pred ---------------------HHcCCC---C----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHH
Q 017815 282 ---------------------YRLGWI---D----DSIVKRVHNILQQAKLPTAPPDT-MTVEMF 317 (365)
Q Consensus 282 ---------------------~~~g~~---~----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~ 317 (365)
+.+|.- + ++.++++.+|++++|+|+++.+. ++++++
T Consensus 761 ~~~~~~~~~~~~~~~k~~~la~~l~~~~~~~~~~a~~~i~~i~~l~~~lglP~~L~~~gv~~~~~ 825 (862)
T PRK13805 761 KQAAFPQYEYPRADERYAEIARHLGLPGSTTEEKVESLIKAIEELKAELGIPMSIKEAGVDEADF 825 (862)
T ss_pred cccccccccccccHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 223431 1 13578899999999999999887 887764
No 56
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=4.6e-36 Score=291.03 Aligned_cols=311 Identities=16% Similarity=0.187 Sum_probs=216.2
Q ss_pred ceeeecccc----hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 17 DTLLLISNN----CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 17 ~~~~~~~~~----~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
+-+||.+.. ++++.+ ++|++||+|+.+++...+++.+.|++.| +++. .+...+++|+.++++++++.+++
T Consensus 3 ~y~~G~g~~~~l~~~~~~~--~~r~liv~d~~~~~~~~~~v~~~l~~~~--~~~~--~~~~~~~~p~~~~v~~~~~~~~~ 76 (345)
T cd08171 3 SYSIGEDAYKKIPEVCEKY--GKKVVVIGGKTALAAAKDKIKAALEQSG--IEIT--DFIWYGGESTYENVERLKKNPAV 76 (345)
T ss_pred CeEeCcCHHHHHHHHHHhc--CCEEEEEeCHHHHHHHHHHHHHHHHHCC--CeEE--EEEecCCCCCHHHHHHHHHHHhh
Confidence 345777764 344443 5899999999888778999999999888 6653 34455668899999999999999
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCC--cceeeccCCccEEEEehh
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLG--KNLIGAFYQPQCVLVDTD 170 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~--k~~~~~~~~P~~viiD~~ 170 (365)
.++| +||||||||++|+||++|.. .++|+|+|||| ++|||++++.++++.+.+ |+..+.++.|+++|+||+
T Consensus 77 ~~~d---~iiavGGGs~~D~aK~ia~~--~~~p~i~VPTt--~gtgse~t~~avi~~~~~~~K~~~~~~~~P~~~i~Dp~ 149 (345)
T cd08171 77 QEAD---MIFAVGGGKAIDTVKVLADK--LGKPVFTFPTI--ASNCAAVTAVSVVYNDDGSFKEYYFFKNPPVHCFIDTE 149 (345)
T ss_pred cCCC---EEEEeCCcHHHHHHHHHHHH--cCCCEEEecCc--cccCccccceEEEEcCCCceeecccccCCCCEEEECHH
Confidence 9998 99999999999999999765 48999999999 699999999999986543 555666789999999999
Q ss_pred hhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHh--hhhhhcCC-H----HHHHHHHHHHHHhhHhh---------hhc
Q 017815 171 TLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQN--MHKLMARD-P----RAFAYAIKRSCENKAEV---------VSL 234 (365)
Q Consensus 171 l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~--~~~~~~~~-~----~~l~~~i~~~~~~~~~~---------v~~ 234 (365)
++.++|++++++|++|++.|++ |.|++...+. .++.++.. . +.+.+.+.+++.+..+. ...
T Consensus 150 l~~~~P~~~~~~g~~Dal~ha~---E~y~s~~~~~~~~~~~~a~~~~~~~~~~l~~~l~~a~~~~~~~~~~~ar~~m~~a 226 (345)
T cd08171 150 IIAEAPEKYLWAGIGDTLAKYY---EVTFSARGEKLDHTNLLGVTISRMCSEPLLEYGKKALEDCRNNKVSYALEQVILA 226 (345)
T ss_pred HHHhCCHHHHHHHHHHHHHHHH---HHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999998 7766542111 11111111 0 11223333444432221 111
Q ss_pred chhhhccccc---cCcchhHHHHhhhccC-----CCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 017815 235 DEKESGLRAT---LNLGHTFGHAIETGFG-----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 306 (365)
Q Consensus 235 d~~~~g~r~~---l~~gH~~~Hale~~~~-----~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~ 306 (365)
.....|+... ..+.|.++|++..... ....+||+.++++..+..... -.++.++++++|++++|+|+
T Consensus 227 ~~~~~G~~~~la~~~~~~~~~Hg~~~al~~lp~~~~~~~hg~~~~~~~~~~~~~~-----~~~~~i~~i~~l~~~lglP~ 301 (345)
T cd08171 227 IIVTTGIVSNLVTPDYNSGLAHALFYGLTTLPHIEENHLHGEVVSYGVLVLLLVD-----GQEEELERIYPFNKSIGLPV 301 (345)
T ss_pred HHHhhcccccccccCCchHHHHHHHHHhhcCcccccccCccchhHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC
Confidence 1112333221 1222345555544321 123589999998887765421 13567999999999999999
Q ss_pred CCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 307 APPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 307 ~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
++++. ++.+++.+.....-+ ...+. ..| .++++|++.+.+++
T Consensus 302 ~L~~~gv~~~~l~~~~~~a~~--~~~~~-~~p----------~~~t~e~i~~~~~~ 344 (345)
T cd08171 302 CLEDLGLTEDDLEKVLEKALA--TQDLK-HVP----------YPVTKEMIAEAIKD 344 (345)
T ss_pred cHHHcCCCHHHHHHHHHHhcC--cchHh-hCC----------CCCCHHHHHHHHHh
Confidence 99988 888887655544321 11111 122 26788999988875
No 57
>PRK10586 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-35 Score=288.54 Aligned_cols=314 Identities=14% Similarity=0.182 Sum_probs=210.3
Q ss_pred cccccceeeeccc----chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHH
Q 017815 12 FFGNSDTLLLISN----NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 87 (365)
Q Consensus 12 ~~~~~~~~~~~~~----~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~ 87 (365)
+-.|.+.+.|.+. ++++++++ .+|++||+|++.++...+++.+.|++.| +.+ ..+ ++++ +.++++++.
T Consensus 9 ~~~p~~y~~G~ga~~~l~~~~~~~g-~~~~lvv~g~~~~~~~~~~~~~~l~~~~--~~~--~~~-~g~~--~~~~v~~l~ 80 (362)
T PRK10586 9 VVGPANYFSHPGSIDHLHDFFTDEQ-LSRAVWIYGERAIAAAQPYLPPAFELPG--AKH--ILF-RGHC--SESDVAQLA 80 (362)
T ss_pred eeCCcceEECcCHHHHHHHHHHhcC-CCeEEEEEChHHHHHHHHHHHHHHHHcC--CeE--EEe-CCCC--CHHHHHHHH
Confidence 4456666667666 66666663 4899999999999888888999999988 554 334 4554 688899887
Q ss_pred HHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcc-eeec-cCCccEE
Q 017815 88 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN-LIGA-FYQPQCV 165 (365)
Q Consensus 88 ~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~-~~~~-~~~P~~v 165 (365)
+... .++| +||||||||++|+||++| ...++|+++|||| ++|||++++.++++.+.+++ .... ...|.++
T Consensus 81 ~~~~-~~~d---~iiavGGGs~iD~aK~~a--~~~~~p~i~vPT~--a~t~s~~s~~avi~~~~~~~~~~~~~~~~p~~~ 152 (362)
T PRK10586 81 AASG-DDRQ---VVIGVGGGALLDTAKALA--RRLGLPFVAIPTI--AATCAAWTPLSVWYNDAGQALHFEIFDDANFLV 152 (362)
T ss_pred HHhc-cCCC---EEEEecCcHHHHHHHHHH--hhcCCCEEEEeCC--ccccccccCceEEECCCCCeeeecccCCCCCEE
Confidence 7654 4666 999999999999999986 4578999999999 79999999999998765432 2211 2369999
Q ss_pred EEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHH---hhhhhhcCC-HHHHHHHH----HHHHHhh---------
Q 017815 166 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQ---NMHKLMARD-PRAFAYAI----KRSCENK--------- 228 (365)
Q Consensus 166 iiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~---~~~~~~~~~-~~~l~~~i----~~~~~~~--------- 228 (365)
|+||+++.++|++++++|++|++.|.. |.++..-.. ..++.+... .+.+.+.+ ..++.+.
T Consensus 153 i~D~~l~~~~P~~~~~ag~~Dal~~~~---Ea~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~~~~~ 229 (362)
T PRK10586 153 LVEPRIILNAPQEYLLAGIGDTLAKWY---EAVVLAPQPETLPLTVRLGINNALAIRDVLLNSSEQALADQQNGQLTQDF 229 (362)
T ss_pred EEChHHHhcCCHHHHHHHHHHHHHHHH---HHHHccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999999999876 444421000 000000000 00011111 1111111
Q ss_pred HhhhhcchhhhccccccCc---chhHHHHhhhcc----CCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 017815 229 AEVVSLDEKESGLRATLNL---GHTFGHAIETGF----GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQ 301 (365)
Q Consensus 229 ~~~v~~d~~~~g~r~~l~~---gH~~~Hale~~~----~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~ 301 (365)
.+++......+|+...+++ +-+++|++...+ ..++++|||+||+||.+++.+. | +++.++++.+++++
T Consensus 230 ~~vv~a~i~~~g~~s~~g~~~~~~a~aHai~~~lt~~~~~~~~lHGeaVa~G~l~~l~l~---~--~~~~~~~l~~~l~~ 304 (362)
T PRK10586 230 CDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALL---G--QDDVLAQLIGAYQR 304 (362)
T ss_pred HHHHHHHHHHhhhhhhcccCCCccHHHHHHHHccccccCCCcCCCHHHHHHHHHHHHHHc---C--CHHHHHHHHHHHHH
Confidence 1122222333444333333 334455555432 1246899999999999998885 2 46789999999999
Q ss_pred cCCCCCCCCC-CC---HHHHHHHHHhcccccCC-eEEEEeeCCCCcceEEccCCCHHHHHHHHHHH
Q 017815 302 AKLPTAPPDT-MT---VEMFKSIMAVDKKVADG-LLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 362 (365)
Q Consensus 302 lglp~~~~~~-i~---~~~~~~~l~~dkk~~~~-~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~ 362 (365)
+|+|+++.++ ++ .+++ +.+.. +..+++ .++. +|. +++.|.+.+++++.
T Consensus 305 lGLP~~L~dlGi~~~~~e~l-~~ia~-~a~~~~~~~~~-~p~----------~vt~e~i~~ai~~~ 357 (362)
T PRK10586 305 FHLPTTLAELDVDINNQAEI-DRVIA-HTLRPVESIHY-LPV----------TLTPDTLRAAFEKV 357 (362)
T ss_pred cCCCCCHHHCCCCCCCHHHH-HHHHH-HHcCCcchhhc-CCC----------CCCHHHHHHHHHHH
Confidence 9999999887 75 3555 44433 334433 3322 233 67788888888654
No 58
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=100.00 E-value=4.1e-34 Score=263.76 Aligned_cols=332 Identities=19% Similarity=0.196 Sum_probs=241.8
Q ss_pred ceecccccccccceeeeccc----chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCC
Q 017815 5 ALLYKDRFFGNSDTLLLISN----NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKN 79 (365)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~ 79 (365)
+-+..-.||.|+.++||++. +..++.++ .|++++|||+++.+. ..+...++|+++| +++. +++++.++|+
T Consensus 38 k~~~~af~m~~s~~rfG~gv~~Evg~dikn~g-aKk~llvTDkni~~~~~~~~a~~~L~~~~--I~~~--vyD~v~~ePt 112 (465)
T KOG3857|consen 38 KMMSVAFFMIPSTSRFGKGVLAEVGDDIKNLG-AKKTLLVTDKNIAKLGLVKVAQDSLEENG--INVE--VYDKVQPEPT 112 (465)
T ss_pred ccceeeEEeccchhhhcchhHHHHHHHHHhcC-ccceEEeeCCChhhcccHHHHHHHHHHcC--CceE--EecCccCCCc
Confidence 34555678999999999998 55566664 799999999999998 7889999999999 6654 4689999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh----------------------cCCcEEEecccccccc
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------------RGVSFIQIPTTVMAQV 137 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~----------------------~g~p~i~IPTTl~A~~ 137 (365)
..++.+.++++++.++| .+|||||||++|.||.+|...- .-+|+|+|||| |+|
T Consensus 113 v~s~~~alefak~~~fD---s~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTT--aGT 187 (465)
T KOG3857|consen 113 VGSVTAALEFAKKKNFD---SFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTT--AGT 187 (465)
T ss_pred hhhHHHHHHHHHhcccc---eEEEEcCcchhhhHHHHHHhhcCCCccchhccCCcccccccccccccceEecccC--CCc
Confidence 99999999999999999 9999999999999998764211 12799999999 899
Q ss_pred ccccCCceEEecCCCcceee---ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHH------------
Q 017815 138 DSSVGGKTGINHRLGKNLIG---AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ------------ 202 (365)
Q Consensus 138 ~s~~~~~~~i~~~~~k~~~~---~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~------------ 202 (365)
+|++++.++++.+..|-..| .+..|...++||.-+.++|++++++.+.|++.||+ |+|.+.-
T Consensus 188 gSEtT~~AI~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~~v~a~tGfDvlcHal---Esyts~py~~rsp~psnp~ 264 (465)
T KOG3857|consen 188 GSETTRFAIIDYEELKIKMGIIDKNIKPTLAVNDPLTMLGLPPRVTAATGFDVLCHAL---ESYTSTPYDQRSPRPSNPG 264 (465)
T ss_pred cccceeeEEecchhhheeeeeecccccceeeecChHHhccCChHHhhhcchHHHHHHH---HHHhcCcccccCCCCCCCc
Confidence 99999999998876544333 44689999999999999999999999999999999 7765431
Q ss_pred ------H-HhhhhhhcCC-HHHHHHHHHHHHHhhHhhhhc-----chhhhccc---cccCcchhHHHHhhhcc------C
Q 017815 203 ------E-QNMHKLMARD-PRAFAYAIKRSCENKAEVVSL-----DEKESGLR---ATLNLGHTFGHAIETGF------G 260 (365)
Q Consensus 203 ------~-~~~~~~~~~~-~~~l~~~i~~~~~~~~~~v~~-----d~~~~g~r---~~l~~gH~~~Hale~~~------~ 260 (365)
. +..++.++.. .+.+.+++.+++.+..+..++ ..+.+|+. +.+++.|.++|.|+... +
T Consensus 265 ~rp~yqgsNPIsD~wA~~al~li~kyl~rAv~~p~d~eARt~M~~As~~aG~gFgNAgvhlcHglsypisg~vk~~kakd 344 (465)
T KOG3857|consen 265 VRPLYQGSNPISDAWALKALELINKYLVRAVKDPKDEEARTDMHYASYLAGMGFGNAGVHLCHGLSYPISGQVKSYKAKD 344 (465)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhccccCcccccceeeccccccCccccccccc
Confidence 0 1112222221 134456666666665444443 24556774 23455677777777631 1
Q ss_pred CCC----CCcHHHHHHHHHHHHH------------HHHHcCCC----------CHHHHHHHHHHHHHcCCCCCCCCC-CC
Q 017815 261 YGQ----WLHGEAVAAGMVMAVD------------MSYRLGWI----------DDSIVKRVHNILQQAKLPTAPPDT-MT 313 (365)
Q Consensus 261 ~~~----~~HG~~vaig~~~~~~------------l~~~~g~~----------~~~~~~~i~~ll~~lglp~~~~~~-i~ 313 (365)
|.+ +|||..|++.++.... -++++|.. .+...++++.+++++|+|-.+.++ ++
T Consensus 345 y~~dh~liPHGlsv~v~~pavfeft~~~cP~rhl~aaq~LGa~~~h~~~~e~~~~~l~d~lr~~~~~~~i~~gL~~lG~~ 424 (465)
T KOG3857|consen 345 YYHDHNLIPHGLSVAVLLPAVFEFTAAACPDRHLEAAQRLGAIARHFGASEDAGEELADRLRGLMRDMGIPNGLKELGVK 424 (465)
T ss_pred cccccccCCcchhhhhhhhhhhhhccccCchhHHHHHHHhhhHhhcccchhccHHHHHHHHHHHHHhcCCCcchHhhCcc
Confidence 334 8999999998877543 23344421 246799999999999999999998 88
Q ss_pred HHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 314 VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 314 ~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
.+|| ++|....- .+.+..-.-| ...++|++...+++
T Consensus 425 ~sDi-~~Lve~a~-~~~~~~~~aP----------~~~t~E~v~alfek 460 (465)
T KOG3857|consen 425 TSDI-EALVEHAM-HDACHTTNAP----------RQQTKEQVSALFEK 460 (465)
T ss_pred ccch-HHHHhccc-ccccccccCC----------ccccHHHHHHHHHH
Confidence 8886 44443321 1111110012 15677888877765
No 59
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=100.00 E-value=2.1e-33 Score=258.17 Aligned_cols=227 Identities=26% Similarity=0.295 Sum_probs=158.0
Q ss_pred cchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
.+++++++. .++++||+|+++++.+++++.+.|++.| +++.++....+ .++++++.++.+.++..++| +|||
T Consensus 10 l~~~l~~~~-~~~~lvv~d~~t~~~~g~~v~~~l~~~g--~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~d---~ii~ 81 (250)
T PF13685_consen 10 LPEILSELG-LKKVLVVTDENTYKAAGEKVEESLKSAG--IEVAVIEEFVG--DADEDEVEKLVEALRPKDAD---LIIG 81 (250)
T ss_dssp HHHHHGGGT--SEEEEEEETTHHHHHHHHHHHHHHTTT---EEEEEE-EE-----BHHHHHHHHTTS--TT-----EEEE
T ss_pred HHHHHHhcC-CCcEEEEEcCCHHHHHHHHHHHHHHHcC--CeEEEEecCCC--CCCHHHHHHHHHHhcccCCC---EEEE
Confidence 377888874 6899999999999999999999999998 77764332223 46999999999998877777 9999
Q ss_pred ecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecC-CCcceeeccCCccEEEEehhhhCCCCHHHHHh
Q 017815 104 LGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHR-LGKNLIGAFYQPQCVLVDTDTLNTLPDRELAS 182 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~-~~k~~~~~~~~P~~viiD~~l~~tlP~~~~~s 182 (365)
+|||+++|++|++ ++.+++||++|||+ +++|+-.++.+++..+ +.|...+....|.+||+|.+++.++|.++++|
T Consensus 82 vGgG~i~D~~K~~--A~~~~~p~isVPTa--~S~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIiaD~dIi~~AP~~l~~a 157 (250)
T PF13685_consen 82 VGGGTIIDIAKYA--AFELGIPFISVPTA--ASHDGFASPVASLTVDDGFKVSYGPAKAPIAIIADTDIIANAPRRLIAA 157 (250)
T ss_dssp EESHHHHHHHHHH--HHHHT--EEEEES----SSGGGTSSEEEEEET-TEEEEE-E----SEEEEEHHHHHTS-HHHHHH
T ss_pred eCCcHHHHHHHHH--HHhcCCCEEEeccc--cccccccCCCeeEEecCCCceeecCCCCCeEEEEeHHHHHhCCHHHHHh
Confidence 9999999999999 56789999999999 5889999999999887 44555534679999999999999999999999
Q ss_pred cHHHHH-HHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhH---------hhhhcchhhhc---cccccCcch
Q 017815 183 GLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKA---------EVVSLDEKESG---LRATLNLGH 249 (365)
Q Consensus 183 G~~D~l-kha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~---------~~v~~d~~~~g---~r~~l~~gH 249 (365)
|++|++ |...+.||++.+.+... + .+...+++.+++..-. +.+.+....+| .|+.+|.+|
T Consensus 158 G~GDli~k~tA~~DW~La~~~~e~----~---~~~~~~~v~~~~~~~~~~~~d~~~i~~L~~~L~~sg~amSRPaSGsEH 230 (250)
T PF13685_consen 158 GFGDLISKYTALADWKLAHEYGEP----Y---CEYAADMVEEALRNILKDPDDPEAIKALMEALIMSGLAMSRPASGSEH 230 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----------HHHHHHHHHHHH---S-TT-HHHHHHHHHHHHHHHHHHSTTT-SHHH
T ss_pred hHHHHHHhhhhHHHHHHHHHhhhh----H---HHHHHHHHHHHHHHHHcCcCcHHHHHHHHHHHHHcccccCCCccchhh
Confidence 999999 99999999877643211 1 1222233333332211 11122233344 367899999
Q ss_pred hHHHHhhhccCCCCCCcHHHHH
Q 017815 250 TFGHAIETGFGYGQWLHGEAVA 271 (365)
Q Consensus 250 ~~~Hale~~~~~~~~~HG~~va 271 (365)
.|+|+||+.. .+.+||++||
T Consensus 231 ~~sH~le~~~--~~~lHG~~Vg 250 (250)
T PF13685_consen 231 LFSHALEMLA--KPALHGEQVG 250 (250)
T ss_dssp HHHHHHHHH---S---HHHHHH
T ss_pred HHHHHHHhhc--CCCccccccC
Confidence 9999999986 4789999986
No 60
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=96.74 E-value=0.013 Score=49.93 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=64.6
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
++.||++......+.++..+.|++.| +.+...+.. .+++.+.+.+.++.+.+.+++ ++|++-|+ .--+.+.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~g--i~~~~~V~s---aHR~p~~l~~~~~~~~~~~~~---viIa~AG~-~a~Lpgv 72 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFG--IPYEVRVAS---AHRTPERLLEFVKEYEARGAD---VIIAVAGM-SAALPGV 72 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT---EEEEEE-----TTTSHHHHHHHHHHTTTTTES---EEEEEEES-S--HHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcC--CCEEEEEEe---ccCCHHHHHHHHHHhccCCCE---EEEEECCC-cccchhh
Confidence 68899998876669999999999988 666554433 467889999988887777777 99998888 4567888
Q ss_pred HHHHhhcCCcEEEeccc
Q 017815 116 AAASYLRGVSFIQIPTT 132 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTT 132 (365)
+|+ ....|+|.+|+.
T Consensus 73 va~--~t~~PVIgvP~~ 87 (150)
T PF00731_consen 73 VAS--LTTLPVIGVPVS 87 (150)
T ss_dssp HHH--HSSS-EEEEEE-
T ss_pred hee--ccCCCEEEeecC
Confidence 865 569999999988
No 61
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=96.70 E-value=0.0025 Score=63.10 Aligned_cols=80 Identities=30% Similarity=0.398 Sum_probs=69.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC----------CCHHHHHHHHHhcccccCCeEEE
Q 017815 265 LHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT----------MTVEMFKSIMAVDKKVADGLLRL 334 (365)
Q Consensus 265 ~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~----------i~~~~~~~~l~~dkk~~~~~~~~ 334 (365)
+|||+|++||....++++.+|++++..+.|+...+.++++|.+.++. ...++.+..+..|+++.+...+.
T Consensus 1 LhgE~vaagmV~~aeLSr~lGiLsPtsVarLsKiLvr~~lp~Spdsss~k~~s~~r~~pfsk~~~~~s~d~~n~GS~~r~ 80 (595)
T KOG0692|consen 1 LHGECVAAGMVKEAELSRYLGILSPTSVARLSKILVRYSLPFSPDSSSPKLRSVPRKVPFSKSWGLKSSDKKNVGSEKRP 80 (595)
T ss_pred CcchhhhhccccHHHHHHhhCcCCHHHHhhhhHHHHhcCCCCCCCccchhhhcccccCchHHHHhhhhhhhhcccccccc
Confidence 59999999999999999999999999999999999999999988652 12466678999999998888888
Q ss_pred EeeCCCCcceE
Q 017815 335 ILLKGPLGNCV 345 (365)
Q Consensus 335 ~l~~~~~g~~~ 345 (365)
+..++ +++.-
T Consensus 81 V~vea-~~~ta 90 (595)
T KOG0692|consen 81 VKVEA-SVSTA 90 (595)
T ss_pred EEEee-cchhh
Confidence 88887 67643
No 62
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=96.32 E-value=0.046 Score=46.74 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=65.8
Q ss_pred EEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHH
Q 017815 38 LVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAA 117 (365)
Q Consensus 38 livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA 117 (365)
.||++....-.+.++..+.|++-| +++++-+.. .+.+.+.+.++.+.+.+.+++ +||++.|++ --+.+.+|
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~g--i~~dv~V~S---aHRtp~~~~~~~~~a~~~g~~---viIa~AG~a-a~Lpgvva 72 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFG--IPYELRVVS---AHRTPELMLEYAKEAEERGIK---VIIAGAGGA-AHLPGMVA 72 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcC--CCeEEEEEC---cccCHHHHHHHHHHHHHCCCe---EEEEeCCcc-chhHHHHH
Confidence 466776655458899999999988 665544443 477999999999999998888 999998885 45777775
Q ss_pred HHhhcCCcEEEeccc
Q 017815 118 ASYLRGVSFIQIPTT 132 (365)
Q Consensus 118 ~~~~~g~p~i~IPTT 132 (365)
+ ....|+|.+|+.
T Consensus 73 ~--~t~~PVIgvP~~ 85 (156)
T TIGR01162 73 A--LTPLPVIGVPVP 85 (156)
T ss_pred h--ccCCCEEEecCC
Confidence 4 578999999997
No 63
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.23 Score=42.09 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=67.1
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
++-||-+....-...++-.+.|++-| +.++..++. .+.|.+.+.+.++.+++.|+. +|||.-|| .-.+-+.
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fg--i~ye~~VvS---AHRTPe~m~~ya~~a~~~g~~---viIAgAGg-AAHLPGm 74 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFG--VPYEVRVVS---AHRTPEKMFEYAEEAEERGVK---VIIAGAGG-AAHLPGM 74 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcC--CCeEEEEEe---ccCCHHHHHHHHHHHHHCCCe---EEEecCcc-hhhcchh
Confidence 56777776654346677777888888 666655554 467899999999999999999 99998888 5678888
Q ss_pred HHHHhhcCCcEEEeccc
Q 017815 116 AAASYLRGVSFIQIPTT 132 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTT 132 (365)
+|+ +..+|+|-||--
T Consensus 75 vAa--~T~lPViGVPv~ 89 (162)
T COG0041 75 VAA--KTPLPVIGVPVQ 89 (162)
T ss_pred hhh--cCCCCeEeccCc
Confidence 865 578999999977
No 64
>PRK11914 diacylglycerol kinase; Reviewed
Probab=93.63 E-value=0.93 Score=43.18 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=59.1
Q ss_pred CceEEEEEccCchH----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-ch
Q 017815 34 GKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gs 108 (365)
-+|+++|.++..-. ...+++.+.|++.| +++..+. . + ......++++++.+.++| .||++|| |+
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g--~~~~~~~-t--~---~~~~~~~~a~~~~~~~~d---~vvv~GGDGT 76 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRG--VDVVEIV-G--T---DAHDARHLVAAALAKGTD---ALVVVGGDGV 76 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcC--CeEEEEE-e--C---CHHHHHHHHHHHHhcCCC---EEEEECCchH
Confidence 47899999976532 35667888898888 6654332 1 1 245677888777777777 8999988 55
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+-.++..+ ...++|+..||.-
T Consensus 77 i~evv~~l---~~~~~~lgiiP~G 97 (306)
T PRK11914 77 ISNALQVL---AGTDIPLGIIPAG 97 (306)
T ss_pred HHHHhHHh---ccCCCcEEEEeCC
Confidence 55555433 3567999999976
No 65
>PRK13337 putative lipid kinase; Reviewed
Probab=93.24 E-value=0.8 Score=43.65 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=54.6
Q ss_pred ceEEEEEccCchH----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chH
Q 017815 35 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 109 (365)
Q Consensus 35 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv 109 (365)
+|+++|.++..-. ...+++.+.|.+.| +++..+.-. ......++++++.+.+.| .||++|| |++
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~--~~~~~~~t~------~~~~a~~~a~~~~~~~~d---~vvv~GGDGTl 70 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAG--YETSAHATT------GPGDATLAAERAVERKFD---LVIAAGGDGTL 70 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcC--CEEEEEEec------CCCCHHHHHHHHHhcCCC---EEEEEcCCCHH
Confidence 5788888876542 24556777888888 665443222 123455556666666666 7888877 777
Q ss_pred hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
-+++..++. .....|+..||.-
T Consensus 71 ~~vv~gl~~-~~~~~~lgiiP~G 92 (304)
T PRK13337 71 NEVVNGIAE-KENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHhh-CCCCCcEEEECCc
Confidence 777765432 1235689999976
No 66
>PRK13054 lipid kinase; Reviewed
Probab=92.88 E-value=1 Score=42.84 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=52.0
Q ss_pred ceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhH
Q 017815 35 KKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDM 112 (365)
Q Consensus 35 ~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ 112 (365)
+++++|.+++.. .....++.+.|.++| +++.++. .. ......++++++.+.+.| .||++|| |++..+
T Consensus 4 ~~~~~i~N~~~~~~~~~~~~~~~l~~~g--~~~~v~~-t~-----~~~~a~~~a~~~~~~~~d---~vvv~GGDGTl~ev 72 (300)
T PRK13054 4 PKSLLILNGKSAGNEELREAVGLLREEG--HTLHVRV-TW-----EKGDAARYVEEALALGVA---TVIAGGGDGTINEV 72 (300)
T ss_pred ceEEEEECCCccchHHHHHHHHHHHHcC--CEEEEEE-ec-----CCCcHHHHHHHHHHcCCC---EEEEECCccHHHHH
Confidence 577787776642 234555667788888 6654322 11 112345556666566666 7877777 677777
Q ss_pred HHHHHHH-hhcCCcEEEeccc
Q 017815 113 CGYAAAS-YLRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~-~~~g~p~i~IPTT 132 (365)
+-.++.. ....+|+..||.-
T Consensus 73 v~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 73 ATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHhhccCCCCcEEEEeCC
Confidence 6544211 0124689999987
No 67
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=92.52 E-value=1.2 Score=42.17 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=50.5
Q ss_pred ceEEEEEccCch----HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chH
Q 017815 35 KKVLVVTNNTVA----PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 109 (365)
Q Consensus 35 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv 109 (365)
+|++++.++... ....+++.+.|.+.| +++.++.-.. . ... .+.++.+.+.++| +||++|| |++
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~--~~~~~~~t~~--~-~~~---~~~~~~~~~~~~d---~ivv~GGDGTl 70 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEG--MEIHVRVTWE--K-GDA---ARYVEEARKFGVD---TVIAGGGDGTI 70 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCC--CEEEEEEecC--c-ccH---HHHHHHHHhcCCC---EEEEECCCChH
Confidence 578889888433 235677888898888 6655432221 1 122 2333344445556 8888877 777
Q ss_pred hhHHHHHHHHhhcC-CcEEEeccc
Q 017815 110 GDMCGYAAASYLRG-VSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g-~p~i~IPTT 132 (365)
..++..+.. ... .|+..||.-
T Consensus 71 ~~v~~~l~~--~~~~~~lgiiP~G 92 (293)
T TIGR00147 71 NEVVNALIQ--LDDIPALGILPLG 92 (293)
T ss_pred HHHHHHHhc--CCCCCcEEEEcCc
Confidence 777765531 123 366669976
No 68
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=91.56 E-value=1.2 Score=44.90 Aligned_cols=89 Identities=26% Similarity=0.417 Sum_probs=51.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
++|+-|||+++... .+.+...+....+.+++ ..+|.-.+ .....++-+.++.+...+ +-+-+||+=||||.-|+
T Consensus 129 p~~i~vits~~~aa--~~D~~~~~~~r~p~~~~--~~~~~~vQG~~a~~~i~~al~~~~~~~-~~dviii~RGGGs~eDL 203 (432)
T TIGR00237 129 PKRVGVITSQTGAA--LADILHILKRRDPSLKV--VIYPTLVQGEGAVQSIVESIELANTKN-ECDVLIVGRGGGSLEDL 203 (432)
T ss_pred CCEEEEEeCCccHH--HHHHHHHHHhhCCCceE--EEecccccCccHHHHHHHHHHHhhcCC-CCCEEEEecCCCCHHHh
Confidence 78999999998643 34455555554432444 44443222 224455555555544322 22458889999999998
Q ss_pred HHHH-----HHHhhcCCcEE
Q 017815 113 CGYA-----AASYLRGVSFI 127 (365)
Q Consensus 113 ak~v-----A~~~~~g~p~i 127 (365)
.-|= -+.+.+.+|+|
T Consensus 204 ~~Fn~e~~~rai~~~~~Pvi 223 (432)
T TIGR00237 204 WSFNDEKVARAIFLSKIPII 223 (432)
T ss_pred hhcCcHHHHHHHHcCCCCEE
Confidence 7541 12344566665
No 69
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=91.42 E-value=2 Score=44.84 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=69.9
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.+|.|+++....-...++..+.|++-| +++.+.+.. .+.+.+.+.++++.+.+.+++ +||++=|++ --+.+
T Consensus 411 ~~v~i~~gs~sd~~~~~~~~~~l~~~g--~~~~~~v~s---ahr~~~~~~~~~~~~~~~~~~---v~i~~ag~~-~~l~~ 481 (577)
T PLN02948 411 PLVGIIMGSDSDLPTMKDAAEILDSFG--VPYEVTIVS---AHRTPERMFSYARSAHSRGLQ---VIIAGAGGA-AHLPG 481 (577)
T ss_pred CeEEEEECchhhHHHHHHHHHHHHHcC--CCeEEEEEC---CccCHHHHHHHHHHHHHCCCC---EEEEEcCcc-ccchH
Confidence 468889988766568999999999998 666555443 478999999999999988888 888887774 55777
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+|+ +..+|+|.||+.
T Consensus 482 ~~a~--~t~~pvi~vp~~ 497 (577)
T PLN02948 482 MVAS--MTPLPVIGVPVK 497 (577)
T ss_pred HHhh--ccCCCEEEcCCC
Confidence 7754 579999999997
No 70
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=90.46 E-value=2.1 Score=43.06 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=49.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
++|+-|||.++... .+.+.+.+....+.+++ +.++.-.+ .-...++-+.++.+...++ +-+||+=||||.-|+
T Consensus 135 p~~I~viTs~~gAa--~~D~~~~~~~r~p~~~~--~~~~~~vQG~~A~~~i~~al~~~~~~~~--Dviii~RGGGS~eDL 208 (438)
T PRK00286 135 PKRIGVITSPTGAA--IRDILTVLRRRFPLVEV--IIYPTLVQGEGAAASIVAAIERANARGE--DVLIVARGGGSLEDL 208 (438)
T ss_pred CCEEEEEeCCccHH--HHHHHHHHHhcCCCCeE--EEecCcCcCccHHHHHHHHHHHhcCCCC--CEEEEecCCCCHHHh
Confidence 78999999998643 34444555544322343 44443222 1233444444444433332 457888999999998
Q ss_pred HHH-----HHHHhhcCCcEE
Q 017815 113 CGY-----AAASYLRGVSFI 127 (365)
Q Consensus 113 ak~-----vA~~~~~g~p~i 127 (365)
.-| +-+.+...+|+|
T Consensus 209 ~~Fn~e~v~~ai~~~~~Pvi 228 (438)
T PRK00286 209 WAFNDEAVARAIAASRIPVI 228 (438)
T ss_pred hccCcHHHHHHHHcCCCCEE
Confidence 532 222344566655
No 71
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=90.13 E-value=2.9 Score=42.70 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=59.7
Q ss_pred hhhhccCCceEEEEEccCchH----H-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 27 LYYRHVQGKKVLVVTNNTVAP----L-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 27 ~l~~~~~~~~~livtd~~~~~----~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
.+..+...+|++||.++...+ . +.+++...|+.+| +++.++. . + .-....++++.+...+.| .|
T Consensus 104 ~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~g--i~~~v~~-T--~---~~ghA~~la~~~~~~~~D---~V 172 (481)
T PLN02958 104 YLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDAD--IQLTIQE-T--K---YQLHAKEVVRTMDLSKYD---GI 172 (481)
T ss_pred HHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcC--CeEEEEe-c--c---CccHHHHHHHHhhhcCCC---EE
Confidence 333333468999999976543 2 3456778899988 6655332 1 1 113455666665555666 99
Q ss_pred EEecC-chHhhHHHHHHHHh----hcCCcEEEeccc
Q 017815 102 VALGG-GVIGDMCGYAAASY----LRGVSFIQIPTT 132 (365)
Q Consensus 102 IaiGG-Gsv~D~ak~vA~~~----~~g~p~i~IPTT 132 (365)
|++|| |++-.+.-.+...- ...+|+-.||.-
T Consensus 173 V~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaG 208 (481)
T PLN02958 173 VCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAG 208 (481)
T ss_pred EEEcCCCHHHHHHHHHhhCccccccccCceEEecCc
Confidence 99998 77777775442110 125899999986
No 72
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=89.81 E-value=1.9 Score=41.33 Aligned_cols=78 Identities=26% Similarity=0.403 Sum_probs=47.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCC-CCCCHHHHHHHHHHHHHcC--CCCcceEEEecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-NYKNMDTLMKVFDKAIESR--LDRRCTFVALGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e-~~~~~~~v~~~~~~~~~~~--~dr~~~IIaiGGGsv~ 110 (365)
.+|+-|||.++... .+.+...+...++.+++ ..+|.-. -.....++-+.++.+.+.+ .+-+-+||+=||||.-
T Consensus 14 p~~I~vITs~~gAa--~~D~~~~~~~r~~~~~~--~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 14 PKRIAVITSPTGAA--IQDFLRTLKRRNPIVEI--ILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred CCEEEEEeCCchHH--HHHHHHHHHHhCCCcEE--EEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 68999999998643 34455556555533444 4444322 1224556666666665543 1123477888999999
Q ss_pred hHHHH
Q 017815 111 DMCGY 115 (365)
Q Consensus 111 D~ak~ 115 (365)
|+.-|
T Consensus 90 DL~~F 94 (319)
T PF02601_consen 90 DLWAF 94 (319)
T ss_pred Hhccc
Confidence 98754
No 73
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=89.78 E-value=3 Score=39.81 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=59.6
Q ss_pred ceEEEEEccCch----HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 35 KKVLVVTNNTVA----PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 35 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
+++.++.++... +.+.+++.+.|++.| .++..+... . . ....++++++...+.| .||+.||=-++
T Consensus 3 ~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g--~~~~~~~t~---~--~-g~a~~~a~~a~~~~~D---~via~GGDGTv 71 (301)
T COG1597 3 KKALLIYNPTSGKGKAKKLLREVEELLEEAG--HELSVRVTE---E--A-GDAIEIAREAAVEGYD---TVIAAGGDGTV 71 (301)
T ss_pred ceEEEEEcccccccchhhHHHHHHHHHHhcC--CeEEEEEee---c--C-ccHHHHHHHHHhcCCC---EEEEecCcchH
Confidence 577788776543 347888999999998 665544322 1 1 4677777777777888 89999886666
Q ss_pred hHHHHHHHHhhcCCc-EEEeccc
Q 017815 111 DMCGYAAASYLRGVS-FIQIPTT 132 (365)
Q Consensus 111 D~ak~vA~~~~~g~p-~i~IPTT 132 (365)
.-+ +...+.++.| +-.||+-
T Consensus 72 ~ev--ingl~~~~~~~LgilP~G 92 (301)
T COG1597 72 NEV--ANGLAGTDDPPLGILPGG 92 (301)
T ss_pred HHH--HHHHhcCCCCceEEecCC
Confidence 544 3445667777 8889987
No 74
>PRK03202 6-phosphofructokinase; Provisional
Probab=89.55 E-value=0.73 Score=44.41 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
++.+...++++.+++.++| .+|.|||--.++.+..++ ..++|+|.||=|.
T Consensus 77 ~~~~~~~~~~~~l~~~~Id---~Li~IGGd~s~~~a~~L~---e~~i~vigiPkTI 126 (320)
T PRK03202 77 KDEEGRAKAIENLKKLGID---ALVVIGGDGSYMGAKRLT---EHGIPVIGLPGTI 126 (320)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHH---hcCCcEEEecccc
Confidence 4668899999999999999 999999999999987764 3599999999997
No 75
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=88.99 E-value=4.7 Score=33.07 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=47.4
Q ss_pred eEEEEEccCchHHH--HHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhH
Q 017815 36 KVLVVTNNTVAPLY--LDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDM 112 (365)
Q Consensus 36 ~~livtd~~~~~~~--~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ 112 (365)
|+++|.++.....- .+++.+.|...+ .++.++.... .+...++......... .+.||++|| |++.++
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~--~~~~~~~t~~------~~~~~~~~~~~~~~~~--~~~ivv~GGDGTl~~v 70 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAG--IDYEVIETES------AGHAEALARILALDDY--PDVIVVVGGDGTLNEV 70 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTT--CEEEEEEESS------TTHHHHHHHHHHHTTS---SEEEEEESHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcC--CceEEEEEec------cchHHHHHHHHhhccC--ccEEEEEcCccHHHHH
Confidence 57888887654432 268888898887 5655443322 1223333332222222 238888887 666666
Q ss_pred HHHHHHHhhcCC----cEEEeccc
Q 017815 113 CGYAAASYLRGV----SFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~~~g~----p~i~IPTT 132 (365)
+..+ ..... |+..||.-
T Consensus 71 v~~l---~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 71 VNGL---MGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHH---CTSTSSS--EEEEEE-S
T ss_pred HHHH---hhcCCCccceEEEecCC
Confidence 5543 33444 88899965
No 76
>PRK13055 putative lipid kinase; Reviewed
Probab=88.68 E-value=5.1 Score=38.78 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=54.6
Q ss_pred ceEEEEEccCchH----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chH
Q 017815 35 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 109 (365)
Q Consensus 35 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv 109 (365)
+|+++|.++.... ...+++.+.|.+.| +++..+.... ......++++.+.+.++| .||++|| |++
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g--~~~~i~~t~~-----~~~~a~~~~~~~~~~~~d---~vvv~GGDGTl 72 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAG--YETSAFQTTP-----EPNSAKNEAKRAAEAGFD---LIIAAGGDGTI 72 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcC--CeEEEEEeec-----CCccHHHHHHHHhhcCCC---EEEEECCCCHH
Confidence 6888999976543 25677888899888 6654432211 112345555555566666 8999988 555
Q ss_pred hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
-.++..+.. .....|+..||.-
T Consensus 73 ~evvngl~~-~~~~~~LgiiP~G 94 (334)
T PRK13055 73 NEVVNGIAP-LEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHhh-cCCCCcEEEECCC
Confidence 556544421 1235789999976
No 77
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=88.53 E-value=5.9 Score=35.75 Aligned_cols=81 Identities=19% Similarity=0.339 Sum_probs=55.5
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
.+++.+|=+.++.. -|.++..+.|.+.| .++.- ++-.+ ++.+.+++-+ .+ .| +|.||||-+-
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg--~~v~~--L~l~~--~~~~~Ie~~l---~~--~d----~IyVgGGNTF 96 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLG--LEVSE--LHLSK--PPLAAIENKL---MK--AD----IIYVGGGNTF 96 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcC--Ceeee--eeccC--CCHHHHHHhh---hh--cc----EEEECCchHH
Confidence 35888887766543 38999999999998 55433 33333 3666666544 32 35 8999999999
Q ss_pred hHHHHHHH---------HhhcCCcEEEe
Q 017815 111 DMCGYAAA---------SYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~---------~~~~g~p~i~I 129 (365)
++=+-.-- .+..|+|+|-.
T Consensus 97 ~LL~~lke~gld~iIr~~vk~G~~YiG~ 124 (224)
T COG3340 97 NLLQELKETGLDDIIRERVKAGTPYIGW 124 (224)
T ss_pred HHHHHHHHhCcHHHHHHHHHcCCceEEe
Confidence 98765432 24679999876
No 78
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=88.40 E-value=3.3 Score=36.13 Aligned_cols=76 Identities=21% Similarity=0.353 Sum_probs=51.6
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
++++-+|.-++.... .+.+.+.| | +++..+.+. +.++++..++++++.|++ + -||||.+.++|
T Consensus 77 ~~~Iavv~~~~~~~~-~~~~~~ll---~--~~i~~~~~~------~~~e~~~~i~~~~~~G~~---v--iVGg~~~~~~A 139 (176)
T PF06506_consen 77 GPKIAVVGYPNIIPG-LESIEELL---G--VDIKIYPYD------SEEEIEAAIKQAKAEGVD---V--IVGGGVVCRLA 139 (176)
T ss_dssp TSEEEEEEESS-SCC-HHHHHHHH---T---EEEEEEES------SHHHHHHHHHHHHHTT-----E--EEESHHHHHHH
T ss_pred CCcEEEEecccccHH-HHHHHHHh---C--CceEEEEEC------CHHHHHHHHHHHHHcCCc---E--EECCHHHHHHH
Confidence 678888888776542 45555555 3 556556554 678999999999999988 4 46888887777
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
+ ..|+|.+.+-++
T Consensus 140 ~------~~gl~~v~i~sg 152 (176)
T PF06506_consen 140 R------KLGLPGVLIESG 152 (176)
T ss_dssp H------HTTSEEEESS--
T ss_pred H------HcCCcEEEEEec
Confidence 4 369998888664
No 79
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=88.31 E-value=1 Score=43.05 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.+.+..+++++.+++.++| .+|.|||--.++.|..++- ..++|+|-||=|.
T Consensus 75 ~~~~~~~~~~~~l~~~~Id---~Li~IGGdgs~~~a~~L~e--~~~i~vigiPkTI 125 (301)
T TIGR02482 75 KTEEGRQKAVENLKKLGIE---GLVVIGGDGSYTGAQKLYE--EGGIPVIGLPGTI 125 (301)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHH--hhCCCEEeecccc
Confidence 3567899999999999999 9999999999999876642 2589999999997
No 80
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=88.22 E-value=1 Score=43.43 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 77 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.++.+..+++++.+++.++| .+|.|||--.++.|..++- .++|+|.||-|.
T Consensus 75 ~~~~~~~~~~~~~l~~~~Id---~Li~IGGdgs~~~a~~L~e---~~i~vigiPkTI 125 (317)
T cd00763 75 FKDEEGQAKAIEQLKKHGID---ALVVIGGDGSYMGAMRLTE---HGFPCVGLPGTI 125 (317)
T ss_pred cCCHHHHHHHHHHHHHcCCC---EEEEECCchHHHHHHHHHH---cCCCEEEecccc
Confidence 34678899999999999999 9999999999999876642 489999999997
No 81
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=87.19 E-value=5 Score=40.09 Aligned_cols=89 Identities=26% Similarity=0.372 Sum_probs=53.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCC-CCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDG-ENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~-e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
++++=|||+++.+ ....|...+++.-+.++ ++++|-- .-...-.++-+.++.+.+.+ +-+-+|||=||||+=|+
T Consensus 135 p~~IGVITS~tgA--airDIl~~~~rR~P~~~--viv~pt~VQG~~A~~eIv~aI~~an~~~-~~DvlIVaRGGGSiEDL 209 (440)
T COG1570 135 PKKIGVITSPTGA--ALRDILHTLSRRFPSVE--VIVYPTLVQGEGAAEEIVEAIERANQRG-DVDVLIVARGGGSIEDL 209 (440)
T ss_pred CCeEEEEcCCchH--HHHHHHHHHHhhCCCCe--EEEEeccccCCCcHHHHHHHHHHhhccC-CCCEEEEecCcchHHHH
Confidence 6899999999864 34455555555443344 4455532 22234555666666555544 12358899999999998
Q ss_pred HHHH-----HHHhhcCCcEE
Q 017815 113 CGYA-----AASYLRGVSFI 127 (365)
Q Consensus 113 ak~v-----A~~~~~g~p~i 127 (365)
--|= =+.+...+|+|
T Consensus 210 W~FNdE~vaRAi~~s~iPvI 229 (440)
T COG1570 210 WAFNDEIVARAIAASRIPVI 229 (440)
T ss_pred hccChHHHHHHHHhCCCCeE
Confidence 6441 12344566665
No 82
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=86.17 E-value=1.9 Score=40.82 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
++.+...++++.+++.++| .+|.|||--.++.|..++- ..++|+|.||-|.
T Consensus 76 ~~~~~~~~~~~~l~~~~Id---~Li~IGG~gs~~~a~~L~~--~~~i~vigiPkTI 126 (282)
T PF00365_consen 76 KDPEGRKKIVENLKKLGID---ALIVIGGDGSMKGAHKLSE--EFGIPVIGIPKTI 126 (282)
T ss_dssp GSHHHHHHHHHHHHHTTES---EEEEEESHHHHHHHHHHHH--HHHSEEEEEEEET
T ss_pred cchhhhhhHHHHHHHhCCC---EEEEecCCCHHHHHHHHHh--cCceEEEEEeccc
Confidence 3456677899999999999 9999999999999988753 3459999999996
No 83
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=86.05 E-value=1.3 Score=42.75 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccc---cccccccCCceEE
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVM---AQVDSSVGGKTGI 147 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~---A~~~s~~~~~~~i 147 (365)
.+..+++++.+++.++| .+|.|||--.++.|..++ ..++|+|.||-|.. .+||-++|--+++
T Consensus 80 ~~~~~~~~~~l~~~~Id---~LivIGGdgS~~~a~~L~---~~gi~vigiPkTIDNDl~gtd~tiGfdTA~ 144 (324)
T TIGR02483 80 EDGDDKIVANLKELGLD---ALIAIGGDGTLGIARRLA---DKGLPVVGVPKTIDNDLEATDYTFGFDTAV 144 (324)
T ss_pred HHHHHHHHHHHHHcCCC---EEEEECCchHHHHHHHHH---hcCCCEEeeccccCCCCcCCccCcCHHHHH
Confidence 46899999999999999 999999999999987664 35899999999972 3344444433333
No 84
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=85.54 E-value=3.1 Score=40.42 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---hcCCcEEEeccccc---cccccccCCceEE
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVM---AQVDSSVGGKTGI 147 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---~~g~p~i~IPTTl~---A~~~s~~~~~~~i 147 (365)
+.+..+++++.+++.++| .+|.|||--.++.|..++-.+ ..++|+|.||=|.- .+||-++|--+++
T Consensus 77 ~~~~~~~~~~~l~~~~I~---~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~ 148 (338)
T cd00363 77 TEEGRAKAAENLKKHGID---ALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTAL 148 (338)
T ss_pred CHHHHHHHHHHHHHhCCC---EEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHH
Confidence 567899999999999999 999999999999997775432 23799999999972 2444444443333
No 85
>PRK14072 6-phosphofructokinase; Provisional
Probab=85.38 E-value=1.7 Score=43.49 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh-hcC--CcEEEecccc---ccccccccC
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTV---MAQVDSSVG 142 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-~~g--~p~i~IPTTl---~A~~~s~~~ 142 (365)
+.+...++++.+++.++| .+|.|||--.++.|..++-.. ..| +|+|.||=|. +.+||-++|
T Consensus 88 ~~~~~~~~~~~l~~~~Id---~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~G 154 (416)
T PRK14072 88 DRAEYERLLEVFKAHDIG---YFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPG 154 (416)
T ss_pred ChHHHHHHHHHHHHcCCC---EEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCC
Confidence 567899999999999999 999999999999997775321 134 9999999997 344444444
No 86
>PRK14071 6-phosphofructokinase; Provisional
Probab=84.74 E-value=1.7 Score=42.54 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc---ccccccccCCceEE
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV---MAQVDSSVGGKTGI 147 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl---~A~~~s~~~~~~~i 147 (365)
.+..+++++.+++.++| .+|.|||--.++.++.++- ..++|+|.||=|. +.+||-++|--+++
T Consensus 93 ~~~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~~--~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~ 158 (360)
T PRK14071 93 RDRSQEIIDGYHSLGLD---ALIGIGGDGSLAILRRLAQ--QGGINLVGIPKTIDNDVGATEVSIGFDTAV 158 (360)
T ss_pred hHHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHH--hcCCcEEEecccccCCCcCcccCcChhHHH
Confidence 35679999999999999 9999999999998876642 2499999999997 33444444444443
No 87
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=84.63 E-value=0.35 Score=45.73 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=29.5
Q ss_pred HHHHcCCCCcceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 89 KAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 89 ~~~~~~~dr~~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
...+.++| +||.+|| |+.+++++.. ...++|++.|+|.
T Consensus 71 ~~~~~~~D---~ii~lGGDGT~L~~~~~~---~~~~~Pilgin~G 109 (285)
T PF01513_consen 71 EMLEEGVD---LIIVLGGDGTFLRAARLF---GDYDIPILGINTG 109 (285)
T ss_dssp HHHCCCSS---EEEEEESHHHHHHHHHHC---TTST-EEEEEESS
T ss_pred hhcccCCC---EEEEECCCHHHHHHHHHh---ccCCCcEEeecCC
Confidence 33456777 9999999 9999999865 2358999999875
No 88
>PRK00861 putative lipid kinase; Reviewed
Probab=84.44 E-value=6.6 Score=37.23 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=51.2
Q ss_pred ceEEEEEccCchH----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chH
Q 017815 35 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 109 (365)
Q Consensus 35 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv 109 (365)
+++++|.++.... ...+++.+.|++ + +++.++.-. . -....++++++.+.+.| .||++|| |++
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~-~--~~~~~~~t~---~---~~~a~~~a~~~~~~~~d---~vv~~GGDGTl 70 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEP-E--MDLDIYLTT---P---EIGADQLAQEAIERGAE---LIIASGGDGTL 70 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHh-c--CceEEEEcc---C---CCCHHHHHHHHHhcCCC---EEEEECChHHH
Confidence 5788888876532 245677777765 3 444433221 1 12345666666666766 8888887 555
Q ss_pred hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
-.++..+ ...++|+..||.-
T Consensus 71 ~evv~~l---~~~~~~lgviP~G 90 (300)
T PRK00861 71 SAVAGAL---IGTDIPLGIIPRG 90 (300)
T ss_pred HHHHHHH---hcCCCcEEEEcCC
Confidence 5555433 3467899999987
No 89
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=84.35 E-value=7.9 Score=36.59 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=48.1
Q ss_pred EEEEEccCc-hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHHH
Q 017815 37 VLVVTNNTV-APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCG 114 (365)
Q Consensus 37 ~livtd~~~-~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ak 114 (365)
+++|.++.. .....+++.+.|.++| +++.++. .. ......++++++.+.+.| .||++|| |++-.++-
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g--~~~~v~~-t~-----~~~~a~~~a~~~~~~~~d---~vv~~GGDGTi~ev~n 70 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEG--IQLHVRV-TW-----EKGDAQRYVAEALALGVS---TVIAGGGDGTLREVAT 70 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCC--CeEEEEE-ec-----CCCCHHHHHHHHHHcCCC---EEEEEcCChHHHHHHH
Confidence 455555542 2224556677888888 6654432 11 112344556555566666 8999988 56666654
Q ss_pred HHHHHh-hcCCcEEEeccc
Q 017815 115 YAAASY-LRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~-~~g~p~i~IPTT 132 (365)
.+...- ....|+..||.-
T Consensus 71 gl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 71 ALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHhhCCCCCCcEEEEcCC
Confidence 432110 123579999976
No 90
>PRK13059 putative lipid kinase; Reviewed
Probab=84.16 E-value=13 Score=35.26 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=50.5
Q ss_pred ceEEEEEccCchH----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chH
Q 017815 35 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 109 (365)
Q Consensus 35 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv 109 (365)
+|+++|.++.... ...+++.+.|.++| +++..+..... .. .... .+..+.++| .||++|| |++
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g--~~~~~~~~~~~---~~---~~~~-~~~~~~~~d---~vi~~GGDGTv 69 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKG--YLVVPYRISLE---YD---LKNA-FKDIDESYK---YILIAGGDGTV 69 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCC--cEEEEEEccCc---ch---HHHH-HHHhhcCCC---EEEEECCccHH
Confidence 4788888876442 24567888898888 77554332211 11 2222 233345566 9999998 555
Q ss_pred hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
-.++..++. ...++|+..||.-
T Consensus 70 ~evv~gl~~-~~~~~~lgviP~G 91 (295)
T PRK13059 70 DNVVNAMKK-LNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHh-cCCCCcEEEECCC
Confidence 555543321 1346899999976
No 91
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=83.84 E-value=2 Score=42.59 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---hcCCcEEEecccc---ccccccccCCceEEe
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTV---MAQVDSSVGGKTGIN 148 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---~~g~p~i~IPTTl---~A~~~s~~~~~~~i~ 148 (365)
.+..+++++.+++.++| .+|.|||--.++.|..++... ..++|+|.||=|. +.+||-++|-.++++
T Consensus 98 ~~~~~~~~~~L~~~~Id---~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~ 169 (403)
T PRK06555 98 ENPLKVAAERLAADGVD---ILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE 169 (403)
T ss_pred hHHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH
Confidence 45688999999999999 999999999999887665321 1379999999997 344555555444443
No 92
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=83.83 E-value=17 Score=28.95 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=53.9
Q ss_pred ceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 35 KKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 35 ~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
+|++++++.+.... +.+++.+.+++.| +++.+..+ +..++.. .....++| +|-+|--...-..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~g--i~~~i~a~-------~~~e~~~---~~~~~~~D----vIll~PQi~~~~~ 65 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQG--KDIEVDAI-------TATEGEK---AIAAAEYD----LYLVSPQTKMYFK 65 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCC--CceEEEEe-------cHHHHHH---hhccCCCC----EEEEChHHHHHHH
Confidence 58999999987655 7899999999998 66543222 2333333 22334566 6667766665454
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
.+...+-..++|+..||..
T Consensus 66 ~i~~~~~~~~ipv~~I~~~ 84 (104)
T PRK09590 66 QFEEAGAKVGKPVVQIPPQ 84 (104)
T ss_pred HHHHHhhhcCCCEEEeCHH
Confidence 4443333568999999887
No 93
>PRK13057 putative lipid kinase; Reviewed
Probab=83.67 E-value=9.4 Score=35.93 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHHHHHHHHhhcCCcEE
Q 017815 49 YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFI 127 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i 127 (365)
..+++.+.|++.| +++..+ . . +......++++.+ ..+.| .||++|| |++-.++-.+ ...++|+.
T Consensus 14 ~~~~i~~~l~~~g--~~~~~~--~-t---~~~~~a~~~~~~~-~~~~d---~iiv~GGDGTv~~v~~~l---~~~~~~lg 78 (287)
T PRK13057 14 ALAAARAALEAAG--LELVEP--P-A---EDPDDLSEVIEAY-ADGVD---LVIVGGGDGTLNAAAPAL---VETGLPLG 78 (287)
T ss_pred hHHHHHHHHHHcC--CeEEEE--e-c---CCHHHHHHHHHHH-HcCCC---EEEEECchHHHHHHHHHH---hcCCCcEE
Confidence 4678888899888 665432 1 1 1334555665553 34555 8999888 5555555433 34678999
Q ss_pred Eeccc
Q 017815 128 QIPTT 132 (365)
Q Consensus 128 ~IPTT 132 (365)
.||.-
T Consensus 79 iiP~G 83 (287)
T PRK13057 79 ILPLG 83 (287)
T ss_pred EECCC
Confidence 99976
No 94
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=82.19 E-value=4.7 Score=39.28 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=51.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc---ccccccccCCce
Q 017815 74 GENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV---MAQVDSSVGGKT 145 (365)
Q Consensus 74 ~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl---~A~~~s~~~~~~ 145 (365)
....++.+...++++.+++.|+| .+|-|||--....|+.++- ..++|+|-||=|. .+.||-++|-.+
T Consensus 74 ~~~~~~~e~~~~~~~~l~~~gId---~LvvIGGDgS~~gA~~Lae--~~~i~vVGvPkTIDNDi~~td~tiGfdT 143 (347)
T COG0205 74 FPEFKTEEGRKVAAENLKKLGID---ALVVIGGDGSYTGAALLAE--EGGIPVVGVPKTIDNDISGTDFTIGFDT 143 (347)
T ss_pred CCCcccHHHHHHHHHHHHHcCCC---EEEEECCCChHHHHHHHHH--hcCCcEEecCCCccCCCcccccCccHHH
Confidence 44567888999999999999999 9999999888888877743 3459999999997 334444444333
No 95
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.05 E-value=6.9 Score=37.27 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=48.7
Q ss_pred ceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCC---CCCCHHHHHHHHHHHHHcCCCCcceEEEecC-ch
Q 017815 35 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGE---NYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 108 (365)
Q Consensus 35 ~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e---~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gs 108 (365)
+++.|+....-... ..+++.+.|++.| +++.+. .... +........ . .....++| +||++|| |+
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~g--iev~v~--~~~~~~~~~~~~~~~~-~--~~~~~~~d---~vi~~GGDGt 74 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRG--LEVILD--EETAEVLPGHGLQTVS-R--KLLGEVCD---LVIVVGGDGS 74 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCC--CEEEEe--cchhhhcCcccccccc-h--hhcccCCC---EEEEEeCcHH
Confidence 56888877654333 6888888898888 665332 2100 000000000 0 11122455 9999998 66
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++.++... ...++|++.|.+.
T Consensus 75 ~l~~~~~~---~~~~~Pvlgin~G 95 (295)
T PRK01231 75 LLGAARAL---ARHNVPVLGINRG 95 (295)
T ss_pred HHHHHHHh---cCCCCCEEEEeCC
Confidence 77777544 2468898888764
No 96
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=81.67 E-value=13 Score=35.99 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.|-+.-...++.+.+.|+| +|+-.|| |+.-|+++.+ ...+|+..|||-.
T Consensus 84 tTa~DT~~~~r~~~~~gVd---lIvfaGGDGTarDVa~av----~~~vPvLGipaGv 133 (355)
T COG3199 84 TTAEDTINAVRRMVERGVD---LIVFAGGDGTARDVAEAV----GADVPVLGIPAGV 133 (355)
T ss_pred ccHHHHHHHHHHHHhcCce---EEEEeCCCccHHHHHhhc----cCCCceEeecccc
Confidence 3555566677777888999 8887777 8888888654 6789999999873
No 97
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=81.59 E-value=5.5 Score=37.84 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=48.4
Q ss_pred ceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHH-HHHHHHcCCCCcceEEEecC-chHh
Q 017815 35 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKV-FDKAIESRLDRRCTFVALGG-GVIG 110 (365)
Q Consensus 35 ~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~-~~~~~~~~~dr~~~IIaiGG-Gsv~ 110 (365)
+++.|+....-.+. ..+++.+.|++.| +++.+.. ...+.. ........ .+. ...++| +||++|| |+++
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g--~~v~v~~-~~~~~~-~~~~~~~~~~~~-~~~~~d---~vi~~GGDGt~l 77 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRG--FEVVFEA-DTARNI-GLTGYPALTPEE-IGARAD---LAVVLGGDGTML 77 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCC--CEEEEec-chhhhc-CcccccccChhH-hccCCC---EEEEECCcHHHH
Confidence 57888877654333 6888888898888 6643211 000000 00000000 011 122455 9999998 7777
Q ss_pred hHHHHHHHHhhcCCcEEEeccc
Q 017815 111 DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.++... ...++|++-|.+.
T Consensus 78 ~~~~~~---~~~~~pilGIn~G 96 (291)
T PRK02155 78 GIGRQL---APYGVPLIGINHG 96 (291)
T ss_pred HHHHHh---cCCCCCEEEEcCC
Confidence 777654 2467888887654
No 98
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=80.45 E-value=15 Score=34.95 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=62.4
Q ss_pred chhhhhccCCceEEEEEccCch--HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCC-----CHHHHHHHHHHHHH-cCCC
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVA--PLYLDKVTDALTRGNPNVSVENVILPDGENYK-----NMDTLMKVFDKAIE-SRLD 96 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~--~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~-----~~~~v~~~~~~~~~-~~~d 96 (365)
++++.....+..+..+...... ....+.+.+.++++| .+. ++++.|-.+| -.+-+.++.+++.+ ..+|
T Consensus 107 gn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g--~kp--yvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD 182 (323)
T COG2515 107 GNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQG--GKP--YVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFD 182 (323)
T ss_pred cchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcC--CCC--cEeccCCcCccccccHHHHHHHHHHHHhhccCCC
Confidence 3444443335556666555544 346777777777777 443 5566554544 35678888888887 4444
Q ss_pred CcceEEEecCchHhhHHHHHHHH--hhcCCcEEEeccc
Q 017815 97 RRCTFVALGGGVIGDMCGYAAAS--YLRGVSFIQIPTT 132 (365)
Q Consensus 97 r~~~IIaiGGGsv~D~ak~vA~~--~~~g~p~i~IPTT 132 (365)
.+|+|.|+|++ .|++++.. .....++|-||-+
T Consensus 183 --~vVva~gs~gT--~AGl~~g~~~~~~~~~ViG~~v~ 216 (323)
T COG2515 183 --SVVVAPGSGGT--HAGLLVGLAQLGPDVEVIGIDVS 216 (323)
T ss_pred --EEEEeCCCcch--HHHHHHHhhhccCCCceEEEeec
Confidence 58888888776 35555432 2368899999877
No 99
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=79.85 E-value=11 Score=35.51 Aligned_cols=87 Identities=20% Similarity=0.122 Sum_probs=55.9
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+.. .+|+.++++..-+.. ..+.+.+.+++.| +++.. ..++. ...++...+..+++.++| +|+
T Consensus 129 ~~~~~~~~-~~~vail~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~-----~~~d~~~~v~~l~~~~pd---~v~ 197 (312)
T cd06346 129 AQLAAERG-YKSVATTYINNDYGVGLADAFTKAFEALG--GTVTNVVAHEE-----GKSSYSSEVAAAAAGGPD---ALV 197 (312)
T ss_pred HHHHHHcC-CCeEEEEEccCchhhHHHHHHHHHHHHcC--CEEEEEEeeCC-----CCCCHHHHHHHHHhcCCC---EEE
Confidence 35555543 689988887765544 6778888898888 66532 22332 234566777778888888 887
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
-.+.+. |.+.++......|+
T Consensus 198 ~~~~~~--~~~~~~~~~~~~G~ 217 (312)
T cd06346 198 VIGYPE--TGSGILRSAYEQGL 217 (312)
T ss_pred Eecccc--hHHHHHHHHHHcCC
Confidence 776554 66666644444554
No 100
>PRK12361 hypothetical protein; Provisional
Probab=79.81 E-value=11 Score=38.99 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=54.0
Q ss_pred CceEEEEEccCchH----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-ch
Q 017815 34 GKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gs 108 (365)
.+++++|.++.... ...+++.+.|++. +++.++. .++ .....++++++.+.+.| .||++|| |+
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~---~~~~v~~---t~~---~~~a~~la~~~~~~~~d---~Viv~GGDGT 309 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAY---FDLTVKL---TTP---EISAEALAKQARKAGAD---IVIACGGDGT 309 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcC---CceEEEE---CCC---CccHHHHHHHHHhcCCC---EEEEECCCcH
Confidence 46889999976532 3677888888764 4443322 111 12356666666677776 8888887 66
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+-.++-.+ ...++|+..||.-
T Consensus 310 l~ev~~~l---~~~~~~lgiiP~G 330 (547)
T PRK12361 310 VTEVASEL---VNTDITLGIIPLG 330 (547)
T ss_pred HHHHHHHH---hcCCCCEEEecCC
Confidence 66665433 3567899999977
No 101
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=79.58 E-value=13 Score=36.94 Aligned_cols=79 Identities=15% Similarity=0.022 Sum_probs=49.4
Q ss_pred CcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCH-------------HHHHHHHHHHHHcCCCCCCCCCC
Q 017815 246 NLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDD-------------SIVKRVHNILQQAKLPTAPPDTM 312 (365)
Q Consensus 246 ~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~-------------~~~~~i~~ll~~lglp~~~~~~i 312 (365)
+.+..++|++++. . .-.|+..-+.++.+.+--..++..-.. +..+++.++.+.+|++.... .-
T Consensus 257 ~~~lg~~Hal~h~--l-~~~~~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~lg~~~~~~-~~ 332 (398)
T cd08178 257 NAFLGICHSMAHK--L-GAEFHIPHGLANAILLPHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGLPGKTD-EE 332 (398)
T ss_pred ccchhhhhhhhhh--h-ccCCCCChHHHHHHHHHHHHHhhcccccccccccccccccchHHHHHHHHHHcCCCCCCH-HH
Confidence 4466789999876 3 456777777766666555445443111 12578888999999984321 12
Q ss_pred CHHHHHHHHHhccccc
Q 017815 313 TVEMFKSIMAVDKKVA 328 (365)
Q Consensus 313 ~~~~~~~~l~~dkk~~ 328 (365)
..+++++.++..++..
T Consensus 333 ~~~~~~~~i~~l~~~l 348 (398)
T cd08178 333 KVESLIKAIEELKKKL 348 (398)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3466777787777653
No 102
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=79.52 E-value=11 Score=36.48 Aligned_cols=90 Identities=12% Similarity=-0.004 Sum_probs=58.7
Q ss_pred chhhhhcc----CCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcc
Q 017815 25 NCLYYRHV----QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRC 99 (365)
Q Consensus 25 ~~~l~~~~----~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~ 99 (365)
.+++.+.. +.+|+.+|++...+-. ..+.+.+.+++.| +++..... ..+...++...+..++..++|
T Consensus 127 ~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~----~~~~~~D~~~~v~~i~~~~pd--- 197 (351)
T cd06334 127 VQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALKALAEKLG--FEVVLEPV----PPPGPNDQKAQWLQIRRSGPD--- 197 (351)
T ss_pred HHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHHHHHHHcC--Ceeeeecc----CCCCcccHHHHHHHHHHcCCC---
Confidence 45555543 3689999888766544 7778888899988 66532211 122335677778888888888
Q ss_pred eEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 100 TFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 100 ~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+|+-.+.+. |.+.++-.....|.+
T Consensus 198 ~V~~~~~~~--~~~~~~~~~~~~G~~ 221 (351)
T cd06334 198 YVILWGWGV--MNPVAIKEAKRVGLD 221 (351)
T ss_pred EEEEecccc--hHHHHHHHHHHcCCC
Confidence 887776665 666666544445554
No 103
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=79.03 E-value=23 Score=33.61 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=61.4
Q ss_pred ecccchhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCc
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRR 98 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~ 98 (365)
+....++++.++ .+++.++++...+. ...+.+.+.+++.| +++.. ..++.+ .+.......++.+++.+++
T Consensus 148 ~~a~~~~~~~~~-~~~v~~l~~~~~~g~~~~~~~~~~~~~~g--i~v~~~~~~~~~---~~~~d~~~~l~~l~~~~~~-- 219 (348)
T cd06350 148 ALAIVALLKHFG-WTWVGLVYSDDDYGRSGLSDLEEELEKNG--ICIAFVEAIPPS---STEEDIKRILKKLKSSTAR-- 219 (348)
T ss_pred HHHHHHHHHHCC-CeEEEEEEecchhHHHHHHHHHHHHHHCC--CcEEEEEEccCC---CcHHHHHHHHHHHHhCCCc--
Confidence 333456666553 57888888766543 47888888999888 66532 122221 1346788888888888877
Q ss_pred ceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+||..+.+ -|+..++..+...|+
T Consensus 220 -vvv~~~~~--~~~~~~~~~a~~~g~ 242 (348)
T cd06350 220 -VIVVFGDE--DDALRLFCEAYKLGM 242 (348)
T ss_pred -EEEEEeCc--HHHHHHHHHHHHhCC
Confidence 88888876 466766665565555
No 104
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=78.91 E-value=21 Score=35.64 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=65.5
Q ss_pred ccceeeecccchhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
|+....+....++++.+. -+++.+|++...+ ....+.+.+.+++.| +.+.... ++ ..+...++...+..+++
T Consensus 154 p~d~~~~~a~~~~l~~~~-w~~vaii~~~~~~G~~~~~~~~~~~~~~g--i~i~~~~~~~---~~~~~~d~~~~l~~l~~ 227 (452)
T cd06362 154 PPDSFQAQAMVDIVKAFN-WTYVSTVASEGNYGEKGIEAFEKLAAERG--ICIAGSEKIP---SSATEEEFDNIIRKLLS 227 (452)
T ss_pred CChHHHHHHHHHHHHHCC-CcEEEEEEeCCHHHHHHHHHHHHHHHHCC--eeEEEEEEcC---CCCCHHHHHHHHHHHhh
Confidence 333333443455666553 5788888887654 347788888898888 6553221 22 12345677788877776
Q ss_pred -cCCCCcceEEEecCchHhhHHHHHHHHhhcCC--cEEEeccc
Q 017815 93 -SRLDRRCTFVALGGGVIGDMCGYAAASYLRGV--SFIQIPTT 132 (365)
Q Consensus 93 -~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~--p~i~IPTT 132 (365)
.+++ +||..|.. -|+..++..+...|+ +++-|.+.
T Consensus 228 ~~~a~---viil~~~~--~~~~~~~~~a~~~g~~~~~~~i~~~ 265 (452)
T cd06362 228 KPNAR---VVVLFCRE--DDIRGLLAAAKRLNAEGHFQWIASD 265 (452)
T ss_pred cCCCe---EEEEEcCh--HHHHHHHHHHHHcCCcCceEEEEec
Confidence 3555 87776643 677777766666666 45555443
No 105
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=78.57 E-value=16 Score=37.72 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=51.9
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
++++-||.-+++... .+.+.+.|. +++..+.+. +.++++..+..+++.|++ +|| ||+.+.|+|
T Consensus 97 ~~~ia~vg~~~~~~~-~~~~~~ll~-----~~i~~~~~~------~~~e~~~~~~~l~~~G~~---~vi--G~~~~~~~A 159 (526)
T TIGR02329 97 ASSIGVVTHQDTPPA-LRRFQAAFN-----LDIVQRSYV------TEEDARSCVNDLRARGIG---AVV--GAGLITDLA 159 (526)
T ss_pred CCcEEEEecCcccHH-HHHHHHHhC-----CceEEEEec------CHHHHHHHHHHHHHCCCC---EEE--CChHHHHHH
Confidence 567788887776653 445555553 444445544 678999999999999998 665 999999998
Q ss_pred HHHHHHhhcCCcEEEe
Q 017815 114 GYAAASYLRGVSFIQI 129 (365)
Q Consensus 114 k~vA~~~~~g~p~i~I 129 (365)
+-. |++-|.|
T Consensus 160 ~~~------gl~~ili 169 (526)
T TIGR02329 160 EQA------GLHGVFL 169 (526)
T ss_pred HHc------CCceEEE
Confidence 743 6666655
No 106
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=77.83 E-value=6.5 Score=40.83 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh-cC--CcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RG--VSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~-~g--~p~i~IPTTl 133 (365)
.+.+..+++.+.+++.++| .+|-|||--.++.|..++-.+. .| +++|.||-|.
T Consensus 174 ~~~e~~~~~~~~l~~l~Id---~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTI 229 (568)
T PLN02251 174 ETPEQFKQAEETATKLDLD---GLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTI 229 (568)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceE
Confidence 4667899999999999999 9999999999988877754222 35 9999999997
No 107
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=77.77 E-value=15 Score=34.52 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=46.4
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHH----------------HHHHHHcCCCCc
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKV----------------FDKAIESRLDRR 98 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~----------------~~~~~~~~~dr~ 98 (365)
+++||..+..-...+..++.+.|.+...++++.+ +. |..+|..+.+++. .+.+. .+|
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~v-v~--G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~--~aD-- 243 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITL-VT--GSSNPNLDELKKFAKEYPNIILFIDVENMAELMN--EAD-- 243 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEE-EE--CCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHH--HCC--
Confidence 3566666643333355666666654332244433 33 3333444444433 23332 234
Q ss_pred ceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++|+-||+++..++ ..|+|.+.||+.
T Consensus 244 -l~Is~~G~T~~E~~-------a~g~P~i~i~~~ 269 (279)
T TIGR03590 244 -LAIGAAGSTSWERC-------CLGLPSLAICLA 269 (279)
T ss_pred -EEEECCchHHHHHH-------HcCCCEEEEEec
Confidence 89998887766665 369999999986
No 108
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=77.51 E-value=6.6 Score=40.64 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh---cCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL---RGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~---~g~p~i~IPTTl 133 (365)
++.+..+++++.+++.++| .+|-|||--.++.|..++-.+. .++++|.||-|+
T Consensus 145 ~~~e~~~~~~~~l~~~~Id---~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTI 200 (539)
T TIGR02477 145 ETEEQFAKALTTAKKLKLD---GLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTI 200 (539)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 4678899999999999999 9999999999998877754222 349999999997
No 109
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.33 E-value=12 Score=35.93 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=50.7
Q ss_pred CceEEEEEccCchH--HHHHHHHHHHhhCCCCceEEEEEeCCCC-C--CCCH------HHHHHHHHHHHHcCCCCcceEE
Q 017815 34 GKKVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPDGE-N--YKNM------DTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 34 ~~~~livtd~~~~~--~~~~~v~~~L~~~g~~i~v~~~~~~~~e-~--~~~~------~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.|+....-.+ .+.+++.+.|.+.| +++.+....... . .+.. +.+... +. ...++| +||
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~D---~vi 77 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDAG--IGVRVLDAEAVDLGATHPAPDDFRAMEVVDAD-PD-AADGCE---LVL 77 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHCC--CEEEEeechhhhhcccccccccccccccccch-hh-cccCCC---EEE
Confidence 46788887765433 36888888898888 665322110000 0 0000 000000 11 112445 999
Q ss_pred EecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 103 ALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 103 aiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.+|| |+++-+++.. ...++|++-|.+.
T Consensus 78 ~lGGDGT~L~aar~~---~~~~~PilGIN~G 105 (306)
T PRK03372 78 VLGGDGTILRAAELA---RAADVPVLGVNLG 105 (306)
T ss_pred EEcCCHHHHHHHHHh---ccCCCcEEEEecC
Confidence 9998 7888887654 3568899888765
No 110
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=77.30 E-value=17 Score=34.21 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=56.9
Q ss_pred hhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
+++.+..+.+++.++++...+.. ..+.+.+.+++.| +++......+ +.-.++...+..+++.+++ +||-.
T Consensus 127 ~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~----~~~~d~~~~l~~i~~~~~~---~vi~~ 197 (334)
T cd06342 127 KYAVETLKAKKVAIIDDKTAYGQGLADEFKKALKAAG--GKVVAREGTT----DGATDFSAILTKIKAANPD---AVFFG 197 (334)
T ss_pred HHHHHhcCCCEEEEEeCCcchhhHHHHHHHHHHHHcC--CEEEEEecCC----CCCccHHHHHHHHHhcCCC---EEEEc
Confidence 44443323588999988876544 6777888888888 6654332221 1234567777788888888 77765
Q ss_pred cCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 105 GGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
|. .-|.++++-.+...|.....+
T Consensus 198 ~~--~~~~~~~~~~~~~~g~~~~~~ 220 (334)
T cd06342 198 GY--YPEAGPLVRQMRQLGLKAPFM 220 (334)
T ss_pred Cc--chhHHHHHHHHHHcCCCCcEE
Confidence 53 346666665444555543333
No 111
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=77.11 E-value=6.8 Score=40.59 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh-cC--CcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RG--VSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~-~g--~p~i~IPTTl 133 (365)
++.+..+++.+.+++.++| .+|-|||--.++.|..++-.+. .| +++|.||-|+
T Consensus 150 ~~~e~~~~i~~~l~~~~Id---~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTI 205 (550)
T cd00765 150 ETEDQFKQAEETAKKLDLD---ALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTI 205 (550)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 3567899999999999999 9999999999998877754222 45 8999999997
No 112
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=76.96 E-value=24 Score=32.02 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=54.5
Q ss_pred chhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
.+++......+++.+|++...+. ...+.+.+.+++.| +++....... . ..+.....+..++..+.+ .|+.
T Consensus 126 ~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g--~~i~~~~~~~--~--~~~~~~~~~~~l~~~~~~---~vi~ 196 (298)
T cd06268 126 ADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLG--GEVVAEETYP--P--GATDFSPLIAKLKAAGPD---AVFL 196 (298)
T ss_pred HHHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcC--CEEEEEeccC--C--CCccHHHHHHHHHhcCCC---EEEE
Confidence 45555543257898888775433 36777788888888 5553221111 1 123456666667766666 8888
Q ss_pred ecCc-hHhhHHHHHHHHhhcC--CcEEEeccc
Q 017815 104 LGGG-VIGDMCGYAAASYLRG--VSFIQIPTT 132 (365)
Q Consensus 104 iGGG-sv~D~ak~vA~~~~~g--~p~i~IPTT 132 (365)
.+.+ ....+.+ .....| ++++...++
T Consensus 197 ~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~ 225 (298)
T cd06268 197 AGYGGDAALFLK---QAREAGLKVPIVGGDGA 225 (298)
T ss_pred ccccchHHHHHH---HHHHcCCCCcEEecCcc
Confidence 8774 3344433 333444 455544433
No 113
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=76.80 E-value=33 Score=26.67 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=51.1
Q ss_pred CceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 34 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 34 ~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
.++++++++.+.... +.+++.+.+++.| +++++... +...+.+.. ..+| +|-+|--..--.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~g--i~~~v~a~-------~~~~~~~~~-----~~~D----vill~pqi~~~~ 64 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYG--VPVKIAAG-------SYGAAGEKL-----DDAD----VVLLAPQVAYML 64 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCC--CcEEEEEe-------cHHHHHhhc-----CCCC----EEEECchHHHHH
Confidence 368999999987655 7899999999999 66543322 334444322 2345 555655544333
Q ss_pred HHHHHHHhhcCCcEEEeccc
Q 017815 113 CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPTT 132 (365)
.++-...-..++|+..||..
T Consensus 65 ~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 65 PDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHhhhcCCCEEEeChh
Confidence 33332223458899999877
No 114
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=76.26 E-value=61 Score=30.47 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEE-EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~-~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+..+.+|+.+|+....+.. ..+.+.+.+++.| +++. ...++.+ ..++...+.++++.++| +|+
T Consensus 126 ~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~~-----~~d~~~~~~~l~~~~~d---~v~ 195 (343)
T PF13458_consen 126 AEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAG--GKVVGEIRYPPG-----DTDFSALVQQLKSAGPD---VVV 195 (343)
T ss_dssp HHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEE-TT-----SSHHHHHHHHHHHTTTS---EEE
T ss_pred HHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcC--ceeccceecccc-----cccchHHHHHHhhcCCC---EEE
Confidence 444443223689999988765543 7888899999998 6652 3334422 25778888889998888 777
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
..+++ -|+..++......+.
T Consensus 196 ~~~~~--~~~~~~~~~~~~~~~ 215 (343)
T PF13458_consen 196 LAGDP--ADAAAFLRQLRQLGL 215 (343)
T ss_dssp EESTH--HHHHHHHHHHHHTTG
T ss_pred Eeccc--hhHHHHHHHHHhhcc
Confidence 76644 456666655444443
No 115
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=75.88 E-value=7.7 Score=40.68 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---hcCCcEEEeccccc
Q 017815 77 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVM 134 (365)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---~~g~p~i~IPTTl~ 134 (365)
-++.+..+++.+.+++.++| .+|.|||--.++.|..+|-.+ ..++++|.||-|.-
T Consensus 156 l~~~e~~~~i~e~l~~l~Id---~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTID 213 (610)
T PLN03028 156 IRTTEQVNAALAACEALKLD---GLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLN 213 (610)
T ss_pred cCCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeee
Confidence 34678899999999999999 999999999999887775432 23899999999973
No 116
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.86 E-value=12 Score=35.43 Aligned_cols=86 Identities=21% Similarity=0.159 Sum_probs=49.2
Q ss_pred CceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhh
Q 017815 34 GKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D 111 (365)
-+++.|++...-. ..+.+++.+.|++.| +++.+ +..+. ..+.....-.+.+ ..++| +||++|| |+.+.
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g--~~~~~---~~~~~-~~~~~~~~~~~~~-~~~~D---lvi~iGGDGT~L~ 79 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYK--VEILL---EKESA-EILDLPGYGLDEL-FKISD---FLISLGGDGTLIS 79 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCC--CEEEE---ecchh-hhhcccccchhhc-ccCCC---EEEEECCCHHHHH
Confidence 4678888876531 126788888898888 66432 21110 0000000000111 12455 9999998 77788
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
+++.. ...++|++-|.+.
T Consensus 80 aa~~~---~~~~~PilGIN~G 97 (287)
T PRK14077 80 LCRKA---AEYDKFVLGIHAG 97 (287)
T ss_pred HHHHh---cCCCCcEEEEeCC
Confidence 88764 2468898888654
No 117
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=75.85 E-value=7.6 Score=40.29 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---hcCCcEEEeccccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVM 134 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---~~g~p~i~IPTTl~ 134 (365)
++.+..+++++.+++.++| .+|-|||--.++.|..++-.+ ..++++|.||-|..
T Consensus 148 ~~~e~~~~i~~~l~~~~Id---~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTID 204 (555)
T PRK07085 148 ETEEQKEACLETVKKLKLD---GLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTID 204 (555)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeec
Confidence 4678899999999999999 999999999999887775322 24899999999973
No 118
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.77 E-value=11 Score=35.42 Aligned_cols=85 Identities=15% Similarity=0.037 Sum_probs=46.9
Q ss_pred eEEEEEccCc--hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh-H
Q 017815 36 KVLVVTNNTV--APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD-M 112 (365)
Q Consensus 36 ~~livtd~~~--~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ 112 (365)
|+.|+....- .....+++.+.|++.| +++.+.... .+..+...... .....+.++| +||++||=-++. +
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g--~~v~v~~~~-~~~~~~~~~~~--~~~~~~~~~d---~vi~iGGDGTlL~a 73 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSG--YEVVVDSET-YEHLPEFSEED--VLPLEEMDVD---FIIAIGGDGTILRI 73 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCC--CEEEEecch-hhhcCcccccc--cccccccCCC---EEEEEeCcHHHHHH
Confidence 4667766543 2337889999999888 665432100 00001010000 0111123455 999999966555 4
Q ss_pred HHHHHHHhhcCCcEEEeccc
Q 017815 113 CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPTT 132 (365)
+. .+..++|++.||+.
T Consensus 74 ~~----~~~~~~pi~gIn~G 89 (277)
T PRK03708 74 EH----KTKKDIPILGINMG 89 (277)
T ss_pred HH----hcCCCCeEEEEeCC
Confidence 43 34568999999875
No 119
>PLN02884 6-phosphofructokinase
Probab=75.49 E-value=4.7 Score=40.24 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh-hcC--CcEEEecccc
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTV 133 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-~~g--~p~i~IPTTl 133 (365)
..+++++.+++.++| .+|.|||--.++.|..++-.+ ..| +|+|.||=|.
T Consensus 131 ~~~~i~~~L~~~~Id---~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTI 182 (411)
T PLN02884 131 KTSDIVDSIEARGIN---MLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTI 182 (411)
T ss_pred cHHHHHHHHHHcCCC---EEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccc
Confidence 467889999999999 999999999999997775422 245 9999999996
No 120
>PRK06455 riboflavin synthase; Provisional
Probab=75.41 E-value=37 Score=29.10 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=40.7
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.||....-.....+--.+.|++.|...++..+.+|+ .++---.+-..+.+.++| .||++|-=--.+.-++
T Consensus 3 kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPG-----a~ELP~aakkL~~~~~yD---aVIaLG~VG~t~h~d~ 74 (155)
T PRK06455 3 KIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPG-----IKDLPVAAKKLIEEEGCD---IVMALGMPGPTEKDKY 74 (155)
T ss_pred EEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCC-----HHHHHHHHHHHHhcCCCC---EEEEecceeccCcchh
Confidence 55555555433334555566676633225555666665 222222222333345677 9999984322222377
Q ss_pred HHHHhhcC
Q 017815 116 AAASYLRG 123 (365)
Q Consensus 116 vA~~~~~g 123 (365)
++.....|
T Consensus 75 Va~~vS~G 82 (155)
T PRK06455 75 CAHEASIG 82 (155)
T ss_pred HHHHHHHH
Confidence 76554333
No 121
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.56 E-value=17 Score=34.70 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=48.8
Q ss_pred ceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCC---------CCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 35 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENY---------KNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 35 ~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~---------~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
+++.|+....-.+. +.+++.+.|++.| +++.. +..+.. +..... .. +.+ ...+| +||.
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g--~~v~~---~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~D---~vi~ 74 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHG--FTVYL---DEVGIKEGCIYTQDTVGCHIV-NK-TEL-GQYCD---LVAV 74 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCC--CEEEE---ecccccccchhcccccccccc-ch-hhc-CcCCC---EEEE
Confidence 67888877654333 6888888899888 66532 111100 000000 00 111 12345 9999
Q ss_pred ecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 104 LGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 104 iGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+|| |+.+-++..+ ...++|++-|-+.
T Consensus 75 lGGDGT~L~aa~~~---~~~~~PilGIN~G 101 (296)
T PRK04539 75 LGGDGTFLSVAREI---APRAVPIIGINQG 101 (296)
T ss_pred ECCcHHHHHHHHHh---cccCCCEEEEecC
Confidence 998 7777777654 2468888888654
No 122
>COG2359 SpoVS Stage V sporulation protein SpoVS [Function unknown]
Probab=73.81 E-value=12 Score=27.73 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----hcCCcEEEeccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTT 132 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----~~g~p~i~IPTT 132 (365)
+....++..+++.|-- -|=|||.|.+-...|.+|.+- ..|+.++++|--
T Consensus 14 sVAGAlAgvlr~~g~a---EiQAiGagAvNQaVKAiAiaRgflapsGidL~~vPaF 66 (87)
T COG2359 14 SVAGALAGVLRERGKA---EIQAIGAGAVNQAVKAIAIARGFLAPSGIDLVCVPAF 66 (87)
T ss_pred hHHHHHHHHHHhcCce---eeeeechHHHHHHHHHHHHHhhccCccCCcEEEeeee
Confidence 3566677778887766 799999999999999997652 358999999966
No 123
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=73.30 E-value=34 Score=32.64 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=60.5
Q ss_pred chhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.++++.++ .+|+.++++...+ ....+.+.+.+++.| +++.... ++.+ .+..++...+..+++.++| +||
T Consensus 127 ~~~~~~~~-~~~v~ii~~~~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~~~---~~~~d~~~~l~~i~~~~~d---vvi 197 (350)
T cd06366 127 AALLKKFG-WRRVATIYEDDDYGSGGLPDLVDALQEAG--IEISYRAAFPPS---ANDDDITDALKKLKEKDSR---VIV 197 (350)
T ss_pred HHHHHHCC-CcEEEEEEEcCcccchhHHHHHHHHHHcC--CEEEEEeccCCC---CChhHHHHHHHHHhcCCCe---EEE
Confidence 45555553 5788888876553 346788888999888 6653322 2222 1245777777788777776 888
Q ss_pred EecCchHhhHHHHHHHHhhcCC---cEEEeccc
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV---SFIQIPTT 132 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~---p~i~IPTT 132 (365)
..+.+. |...++..+...|+ .++.|.+.
T Consensus 198 ~~~~~~--~~~~~~~~a~~~g~~~~~~~~i~~~ 228 (350)
T cd06366 198 VHFSPD--LARRVFCEAYKLGMMGKGYVWILTD 228 (350)
T ss_pred EECChH--HHHHHHHHHHHcCCcCCCEEEEECc
Confidence 777655 66666655555554 34444443
No 124
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=72.82 E-value=47 Score=31.84 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=54.3
Q ss_pred hhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
+++.+..+.||+.++++...+. ...+.+.+.+++.| +++...... .....++...+..++..++| +|+..
T Consensus 125 ~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~~~~~G--~~vv~~~~~----~~~~~D~~~~v~~l~~~~pd---~v~~~ 195 (348)
T cd06355 125 DWLMSNKGGKRFYLVGSDYVYPRTANKILKAQLESLG--GEVVGEEYL----PLGHTDFQSIINKIKAAKPD---VVVST 195 (348)
T ss_pred HHHHhccCCCeEEEECCcchHHHHHHHHHHHHHHHcC--CeEEeeEEe----cCChhhHHHHHHHHHHhCCC---EEEEe
Confidence 4444433468999998776554 47777888899888 665322211 11346777888888998988 77766
Q ss_pred cCchHhhHHHHHHHHhhcCC
Q 017815 105 GGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~ 124 (365)
+.|. |.+.++-.....|.
T Consensus 196 ~~~~--~~~~~~~~~~~~G~ 213 (348)
T cd06355 196 VNGD--SNVAFFKQLKAAGI 213 (348)
T ss_pred ccCC--chHHHHHHHHHcCC
Confidence 5543 34444433333443
No 125
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=72.39 E-value=7.5 Score=41.87 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH---hh-cCCcEEEecccc---ccccccccCCceEEe
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YL-RGVSFIQIPTTV---MAQVDSSVGGKTGIN 148 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~---~~-~g~p~i~IPTTl---~A~~~s~~~~~~~i~ 148 (365)
.+...++++.++++++| .+|.|||--..+.+..++.. |. .++|+|.||=|. +.+||=++|.-++++
T Consensus 464 ~~~~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln 536 (762)
T cd00764 464 KKDLETIAYNFQKYGID---GLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN 536 (762)
T ss_pred HHHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH
Confidence 57899999999999999 99999999999888766532 22 589999999997 234444444444443
No 126
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=71.77 E-value=22 Score=36.87 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=47.9
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
..++-||.-+++... .+.+.+.|. +++..+.+. +.+++...+..+++.|++ +|| |||.+.|+|
T Consensus 107 ~~~iavv~~~~~~~~-~~~~~~~l~-----~~i~~~~~~------~~~e~~~~v~~lk~~G~~---~vv--G~~~~~~~A 169 (538)
T PRK15424 107 TSSIGVVTYQETIPA-LVAFQKTFN-----LRIEQRSYV------TEEDARGQINELKANGIE---AVV--GAGLITDLA 169 (538)
T ss_pred CCcEEEEecCcccHH-HHHHHHHhC-----CceEEEEec------CHHHHHHHHHHHHHCCCC---EEE--cCchHHHHH
Confidence 567788887776653 445555553 444445444 678999999999999998 665 999999999
Q ss_pred HHH
Q 017815 114 GYA 116 (365)
Q Consensus 114 k~v 116 (365)
+-.
T Consensus 170 ~~~ 172 (538)
T PRK15424 170 EEA 172 (538)
T ss_pred HHh
Confidence 754
No 127
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=71.46 E-value=8 Score=39.18 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh-hcC--CcEEEecccc---ccccccccCC
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTV---MAQVDSSVGG 143 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-~~g--~p~i~IPTTl---~A~~~s~~~~ 143 (365)
...+++++.+++.+++ .++.|||--.++.|..++-.. .+| +++|.||=|. +..+|-++|-
T Consensus 163 ~~~~~iv~~L~~~~I~---~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GF 228 (459)
T PTZ00286 163 FDPKVMVDTLIRHGIN---ILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGF 228 (459)
T ss_pred hhHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCc
Confidence 5789999999999999 999999999999887765422 234 9999999997 3334444443
No 128
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=71.13 E-value=27 Score=33.48 Aligned_cols=88 Identities=17% Similarity=0.044 Sum_probs=53.7
Q ss_pred chhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+..+.+|+.+++....+. ...+.+.+.+++.| +++... .++. .-.++...+..+++.++| .|+
T Consensus 129 a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~~-----~~~d~s~~i~~i~~~~~d---~v~ 198 (347)
T cd06335 129 VDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAARG--LKPVAVEWFNW-----GDKDMTAQLLRAKAAGAD---AII 198 (347)
T ss_pred HHHHHHhcCCCeEEEEeccCchhhhHHHHHHHHHHHcC--CeeEEEeeecC-----CCccHHHHHHHHHhCCCC---EEE
Confidence 34443333358999998876554 37888889999988 665322 2222 234566777788888887 666
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
-.|.+ -|.+.++......|.
T Consensus 199 ~~~~~--~~~~~~~~~~~~~g~ 218 (347)
T cd06335 199 IVGNG--PEGAQIANGMAKLGW 218 (347)
T ss_pred EEecC--hHHHHHHHHHHHcCC
Confidence 66544 345555443334454
No 129
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.12 E-value=18 Score=34.37 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=47.3
Q ss_pred ceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCC---CCCHHHHHHHHHHHHHcCCCCcceEEEecC-ch
Q 017815 35 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGEN---YKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 108 (365)
Q Consensus 35 ~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~---~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gs 108 (365)
+++.|+....-.+. +.+++.+.|++.| +++.+ .+.... .+.. ..... +. ...++| ++|++|| |+
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g--~~v~~--~~~~~~~~~~~~~-~~~~~-~~-~~~~~d---~vi~lGGDGT 75 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKG--YEVIV--EQQIAHELQLKNV-KTGTL-AE-IGQQAD---LAIVVGGDGN 75 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCC--CEEEE--ecchhhhcCcccc-cccch-hh-cCCCCC---EEEEECCcHH
Confidence 67888877654333 6888888898888 66432 111000 0000 00000 01 112345 9999998 67
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++-++..+ ...++|++-|-+-
T Consensus 76 ~L~aa~~~---~~~~~Pilgin~G 96 (292)
T PRK03378 76 MLGAARVL---ARYDIKVIGINRG 96 (292)
T ss_pred HHHHHHHh---cCCCCeEEEEECC
Confidence 77666544 2347888777654
No 130
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=70.91 E-value=16 Score=31.70 Aligned_cols=65 Identities=11% Similarity=0.192 Sum_probs=51.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
+++.+|=.+.++..+..+.+.+.-+..|..++|+.|+ .|.+-++++.+.++++|+. -|.|+|.-.
T Consensus 4 A~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNLFy-------RT~eR~~~I~~~L~~~Ga~---~vlG~~~d~ 68 (178)
T PF02006_consen 4 AKHPVISVNGNTAALVPEEIVELAKATGAKIEVNLFY-------RTEERVEKIAELLREHGAE---EVLGVNPDA 68 (178)
T ss_pred cCCCEEEEcccHHHhChHHHHHHHHHhCCCEEEEccc-------CCHHHHHHHHHHHHHcCCC---EeeccCCcc
Confidence 5788888899998887777777655555447877652 4789999999999999998 899997654
No 131
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=70.80 E-value=50 Score=26.01 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=51.8
Q ss_pred eEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 36 KVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
|++++++.+.... ..+++++.+++.| +++.+.-+ +..++.... .++| +|=+|--...-.-+
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~g--i~~~i~a~-------~~~e~~~~~-----~~~D----vill~PQv~~~~~~ 63 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERG--VPLEAAAG-------AYGSHYDMI-----PDYD----LVILAPQMASYYDE 63 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEe-------eHHHHHHhc-----cCCC----EEEEcChHHHHHHH
Confidence 5889998775444 8999999999999 66553322 334444322 2445 66677766665555
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
+....-..|+|+..||..
T Consensus 64 i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 64 LKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred HHHHhhhcCCCEEEeCHH
Confidence 444344568999999865
No 132
>PTZ00287 6-phosphofructokinase; Provisional
Probab=70.49 E-value=13 Score=42.39 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh-hcCCc--EEEecccc
Q 017815 77 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRGVS--FIQIPTTV 133 (365)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-~~g~p--~i~IPTTl 133 (365)
-++.+..+++++.+++.++| .+|.|||--.+..|..++-.+ ..|+| +|.||-|+
T Consensus 911 f~t~e~~~ka~~~lk~l~ID---~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTI 967 (1419)
T PTZ00287 911 LFDKENRNKVCETVTNLQLN---GLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTG 967 (1419)
T ss_pred CCCHHHHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCcee
Confidence 45778999999999999999 999999988887777665322 26777 99999997
No 133
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=69.23 E-value=13 Score=40.02 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH---h-hcCCcEEEecccc
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---Y-LRGVSFIQIPTTV 133 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~---~-~~g~p~i~IPTTl 133 (365)
.+..+++.+.+++.++| .+|.|||--.++.+..++-. | ..++|+|.||=|.
T Consensus 464 ~~~~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTI 518 (745)
T TIGR02478 464 GKDLGMIAYYFQKHKID---GLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATI 518 (745)
T ss_pred hhHHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccc
Confidence 46789999999999999 99999999999988766432 1 1579999999997
No 134
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=69.11 E-value=37 Score=33.53 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=49.2
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
.++++++|+++.. +...+++.+.|+..| +++..+.+++ ..+++.+.+.+..+.+.-....++++-+=||+=+-+
T Consensus 26 ~p~kvvlI~t~~~-~~~~~~L~~~l~~~~--~~~e~~~i~d---~~d~~~i~~~l~~l~~~~~~~~~i~lNlTGGTK~Ma 99 (381)
T PF09002_consen 26 KPDKVVLIGTEDM-KEKAERLKSVLKQRG--IKVEFFEIPD---EYDIEEIKESLEQLLEKLKAGDEIILNLTGGTKLMA 99 (381)
T ss_dssp ---EEEEEE-GGG-HHHHHHHHHHHHHTT---EEEEEE--S---SS-HHHHHHHHHHHHHHHHHT-EEEEE-SSS-HHHH
T ss_pred CCCEEEEEECchH-HHHHHHHHHHHHhcC--CCceEEecCC---hhhHHHHHHHHHHHHHhccCCCeEEEEeCCChHHHH
Confidence 3678888888776 556788888999888 7776655543 235665554444443221112348998888876644
Q ss_pred HHHHHHHhhcCCcEEEeccc
Q 017815 113 CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPTT 132 (365)
-.+.-+.-..+.|.+.+.|.
T Consensus 100 Laay~~~r~~~~~i~Yvd~~ 119 (381)
T PF09002_consen 100 LAAYEAFRKYGWPIFYVDPE 119 (381)
T ss_dssp HHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHhcCCCEEEEecC
Confidence 43332233567888888666
No 135
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=69.09 E-value=50 Score=32.03 Aligned_cols=99 Identities=10% Similarity=0.054 Sum_probs=62.9
Q ss_pred ecccchhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCc----eEEEE-EeCCCCCCCCHHHHHHHHHHHHHcC
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNV----SVENV-ILPDGENYKNMDTLMKVFDKAIESR 94 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i----~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~ 94 (365)
+....++++.++ -+++.+|++..-+. ...+.+.+.+++.| + ++... .++ +...++...+..+++.+
T Consensus 142 ~~a~~~~l~~~~-w~~vaii~~~~~~g~~~~~~~~~~~~~~g--~~~~~~v~~~~~~~-----~~~~d~~~~l~~ik~~~ 213 (377)
T cd06379 142 ADVWLEMLRSFK-WNKVILLVSDDHEGRAAQKRFETLLEERE--IEFKIKVEKVVEFE-----PGEKNVTSLLQEAKELT 213 (377)
T ss_pred HHHHHHHHHHcC-CeEEEEEEEcCcchhHHHHHHHHHHHhcC--CccceeeeEEEecC-----CchhhHHHHHHHHhhcC
Confidence 444456666654 58899998876544 36788888898888 5 33221 122 23356777888888877
Q ss_pred CCCcceEEEecCchHhhHHHHHHHHhhcCC---cEEEeccc
Q 017815 95 LDRRCTFVALGGGVIGDMCGYAAASYLRGV---SFIQIPTT 132 (365)
Q Consensus 95 ~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~---p~i~IPTT 132 (365)
++ +||..| ..-|+..++..+...|+ .++-|-|.
T Consensus 214 ~~---vIvl~~--~~~~~~~l~~qa~~~g~~~~~~~wi~t~ 249 (377)
T cd06379 214 SR---VILLSA--SEDDAAVIYRNAGMLNMTGEGYVWIVSE 249 (377)
T ss_pred Ce---EEEEEc--CHHHHHHHHHHHHHcCCCCCCEEEEEec
Confidence 77 777554 45567777765555554 36666555
No 136
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=69.03 E-value=43 Score=31.37 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=52.8
Q ss_pred chhhhhccCCceEEEEEccC--chHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 25 NCLYYRHVQGKKVLVVTNNT--VAPLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~--~~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
.+++.+..+.+++.+|++.. ......+.+.+.+++.| +++... .++.++ ..+...+..+++.++| +|
T Consensus 126 ~~~~~~~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~~~~~~~~-----~d~~~~~~~~~~~~~d---~i 195 (334)
T cd06347 126 AKFATENLKAKKAAVLYDNSSDYSKGLAKAFKEAFKKLG--GEIVAEETFNAGD-----TDFSAQLTKIKAKNPD---VI 195 (334)
T ss_pred HHHHHHhcCCcEEEEEEeCCCchhHHHHHHHHHHHHHcC--CEEEEEEEecCCC-----CcHHHHHHHHHhcCCC---EE
Confidence 44443322357888888543 23335677788888888 665322 333332 2466666777777777 77
Q ss_pred EEecCchHhhHHHHHHHHhhcCCcE
Q 017815 102 VALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 102 IaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
+-.+.+. +++.++..+...|.+.
T Consensus 196 ~~~~~~~--~~~~~~~~~~~~g~~~ 218 (334)
T cd06347 196 FLPGYYT--EVGLIAKQARELGIKV 218 (334)
T ss_pred EEcCchh--hHHHHHHHHHHcCCCC
Confidence 6665554 6666665544556543
No 137
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.91 E-value=12 Score=34.94 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=23.2
Q ss_pred ceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 99 CTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 99 ~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
|+||++|| |+.+-++... ...++|++-|.+-
T Consensus 35 D~vi~iGGDGT~L~a~~~~---~~~~iPilGIN~G 66 (259)
T PRK00561 35 DYLFVLGGDGFFVSTAANY---NCAGCKVVGINTG 66 (259)
T ss_pred CEEEEECCcHHHHHHHHHh---cCCCCcEEEEecC
Confidence 49999998 7777776543 3568898888664
No 138
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=68.82 E-value=41 Score=26.68 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=53.3
Q ss_pred ceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 35 KKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 35 ~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
+++++||..+.... ..++.+++.+..| .++.+.-++ .+.+.+.++ ++| |+=+|=-...=.-
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg--~~~~I~A~s-------~~e~~~~~~-----~~D----vvLlGPQv~y~~~ 63 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKG--KDVTIEAYS-------ETELSEYID-----NAD----VVLLGPQVRYMLK 63 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCC--CceEEEEec-------hhHHHHhhh-----cCC----EEEEChHHHHHHH
Confidence 57899999887655 8999999999988 665543333 234444333 566 6667766544443
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
.+--..-..|+|+..||+-
T Consensus 64 ~~~~~~~~~giPV~vI~~~ 82 (102)
T COG1440 64 QLKEAAEEKGIPVEVIDML 82 (102)
T ss_pred HHHHHhcccCCCeEEeCHH
Confidence 3333344578999999987
No 139
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=68.78 E-value=31 Score=33.52 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=58.2
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+..+.|++.+|.+...+.. +.+.+++.|+..| .++.. ..+.... .++..++.++++.++| +|+
T Consensus 139 ~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G--~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~d---~v~ 208 (366)
T COG0683 139 ADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALG--GEVVVEEVYAPGD-----TDFSALVAKIKAAGPD---AVL 208 (366)
T ss_pred HHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHHHhCC--CeEEEEEeeCCCC-----CChHHHHHHHHhcCCC---EEE
Confidence 555555433358999999888765 8999999999999 64211 1222222 2288999999999999 777
Q ss_pred EecCchHhhHHHHHHHHhhcCCcE
Q 017815 103 ALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..|-|. |.+-++-..-..|..-
T Consensus 209 ~~~~~~--~~~~~~r~~~~~G~~~ 230 (366)
T COG0683 209 VGGYGP--DAALFLRQAREQGLKA 230 (366)
T ss_pred ECCCCc--cchHHHHHHHHcCCCC
Confidence 766555 3444443333455433
No 140
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=68.72 E-value=9.1 Score=38.58 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh-hcC--CcEEEecccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTV 133 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-~~g--~p~i~IPTTl 133 (365)
...+++++.+++.+++ .++.|||--.++.|..++-.. .+| +++|.||=|.
T Consensus 159 ~~~~~iv~~L~~~~I~---~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTI 211 (443)
T PRK06830 159 QDPEEIVDTLERMNIN---ILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTI 211 (443)
T ss_pred hhHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 4688999999999999 999999999999987665321 234 9999999996
No 141
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=68.51 E-value=59 Score=28.86 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=51.0
Q ss_pred CceEEEEEccCch--HHHHHHHHHHHhhC---CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 34 GKKVLVVTNNTVA--PLYLDKVTDALTRG---NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~--~~~~~~v~~~L~~~---g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
+.+++++..+... +.+.+.+.+.+... + +++....++ .....+.+.++.+.+.+..-+ +++|.+.||.
T Consensus 26 ~~~vilv~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~~~~~vd---~~d~~~~~~~v~~~i~~~~~~--~v~vnlsgG~ 98 (203)
T TIGR01884 26 GDLVILVKSPIEDGARRAVESLRAIISDLGGNL--VEGTIKEIE---LKDVPSILRQMSDIIKEEREP--RVIINLSGGM 98 (203)
T ss_pred CcEEEEEcCCCchHHHHHHHHHHHHHHHhccCC--CcceEEEEe---cCCHHHHHHHHHHHHHhcccC--cEEEEcCCCc
Confidence 3477777755322 23677777777654 4 455544443 222457788888888775433 2888987776
Q ss_pred H-hhHHHHHHHHhhcC
Q 017815 109 I-GDMCGYAAASYLRG 123 (365)
Q Consensus 109 v-~D~ak~vA~~~~~g 123 (365)
= +-++-+.|+.....
T Consensus 99 R~l~~~~~~a~~~~~~ 114 (203)
T TIGR01884 99 RILILILLLLAILVKT 114 (203)
T ss_pred hHHHHHHHHHHHhccc
Confidence 5 77777776654433
No 142
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.03 E-value=19 Score=36.03 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=47.5
Q ss_pred cchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
...+++. .++++++|+-........++++..-++.+ |.+| +.+......+.+.+.++.+++.++| +||
T Consensus 120 LA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~----v~~f--~~~~~~~Pv~Iak~al~~ak~~~~D---vvI 187 (451)
T COG0541 120 LAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVG----VPFF--GSGTEKDPVEIAKAALEKAKEEGYD---VVI 187 (451)
T ss_pred HHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcC----Ccee--cCCCCCCHHHHHHHHHHHHHHcCCC---EEE
Confidence 3556666 37899999888776678888877666554 4333 3332334567889999999999888 665
No 143
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=67.74 E-value=34 Score=32.60 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=54.1
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhh--CCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTR--GNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~--~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
.+++....+.+|+.++.+...+.. ..+.+.+.+++ .| +++.... ++.+. ..++...+.++++.++| +
T Consensus 134 ~~~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G--~~vv~~~~~~~~~----~~d~~~~i~~l~~~~~d---~ 204 (342)
T cd06329 134 ASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPD--IQIVGEDLHPLGK----VKDFSPYVAKIKASGAD---T 204 (342)
T ss_pred HHHHHhcccCceEEEEeCChHHHHHHHHHHHHHHHhhcCC--cEEeceeccCCCC----CCchHHHHHHHHHcCCC---E
Confidence 445544433588988887665443 77888888988 87 6653211 12111 13455667778888887 7
Q ss_pred EEEecCchHhhHHHHHHHHhhcCCc
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
|+-.+.+. |.+.++......|..
T Consensus 205 v~~~~~~~--~~~~~~~~~~~~g~~ 227 (342)
T cd06329 205 VITGNWGN--DLLLLVKQAADAGLK 227 (342)
T ss_pred EEEcccCc--hHHHHHHHHHHcCCC
Confidence 76666443 666666544444543
No 144
>PRK04155 chaperone protein HchA; Provisional
Probab=67.67 E-value=58 Score=30.91 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=27.4
Q ss_pred CcceEEEecC-chHhhH------HHHHHHHhhcCCcEEEecccc
Q 017815 97 RRCTFVALGG-GVIGDM------CGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 97 r~~~IIaiGG-Gsv~D~------ak~vA~~~~~g~p~i~IPTTl 133 (365)
.-|.|+--|| |...|+ .+++...+..+.++.+|+...
T Consensus 147 dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGP 190 (287)
T PRK04155 147 DYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGP 190 (287)
T ss_pred cccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 3458888888 666664 666666677899999997765
No 145
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=67.58 E-value=15 Score=30.95 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=52.5
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|-+|..-.+ +.+.|.+.|++.| ++|.-+--.+.++..-.+...++.+.+.+..+|| .|+-=|-|.=+-++
T Consensus 1 KI~igsDh~g~~-lK~~i~~~L~~~g--~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~--GIliCgtGiG~~ia-- 73 (140)
T PF02502_consen 1 KIAIGSDHAGFE-LKEAIKEYLEEKG--YEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADR--GILICGTGIGMSIA-- 73 (140)
T ss_dssp EEEEEE-GGGHH-HHHHHHHHHHHTT--EEEEEESESSTST--HHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHHH--
T ss_pred CEEEEeCHHHHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCe--EEEEcCCChhhhhH--
Confidence 567788887655 6888999999998 7775554344344344455677777777777775 34444444433332
Q ss_pred HHHHhhcCCcEEEecccc
Q 017815 116 AAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTTl 133 (365)
+--..|++...+....
T Consensus 74 --ANK~~GIrAa~~~d~~ 89 (140)
T PF02502_consen 74 --ANKVPGIRAALCSDPY 89 (140)
T ss_dssp --HHTSTT--EEE-SSHH
T ss_pred --hhcCCCEEEEeeCCHH
Confidence 2234688887777664
No 146
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=67.50 E-value=28 Score=29.42 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=48.8
Q ss_pred CceEEEEEccCch---HHHHHHHHHHHhhCCCCc---eEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec--
Q 017815 34 GKKVLVVTNNTVA---PLYLDKVTDALTRGNPNV---SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG-- 105 (365)
Q Consensus 34 ~~~~livtd~~~~---~~~~~~v~~~L~~~g~~i---~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG-- 105 (365)
+-|+.||..+.-. +.+.+...+.|.+.| + ++..+.+|+. +|-=-.+-..++..++| .||++|
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g--~~~~~i~~~~VPGa-----~ElP~a~~~l~~~~~~D---avi~lG~V 72 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHG--VAEENIEVIRVPGA-----FELPLAAKRLAESGRYD---AVIALGCV 72 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTT--TTGGCEEEEEESSG-----GGHHHHHHHHHHCSTES---EEEEEEEE
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcC--CCccceEEEEcCCH-----HHHHHHHHHHhcccCcc---EEEEeccc
Confidence 4577788776533 335666777888888 5 5666777763 33333333333444566 999999
Q ss_pred --CchHhhHHHHHHHH---------hhcCCcEEEe
Q 017815 106 --GGVIGDMCGYAAAS---------YLRGVSFIQI 129 (365)
Q Consensus 106 --GGsv~D~ak~vA~~---------~~~g~p~i~I 129 (365)
|++..+ ++++.. ...++|++.-
T Consensus 73 I~G~T~H~--~~v~~~v~~gl~~lsl~~~~PV~~g 105 (144)
T PF00885_consen 73 IRGETDHF--EYVANAVSRGLMDLSLEYGIPVIFG 105 (144)
T ss_dssp E--SSTHH--HHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cCCCchHH--HHHHHHHHHHHHHHhccCCccEEEE
Confidence 555443 334332 2457777664
No 147
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.75 E-value=25 Score=33.44 Aligned_cols=84 Identities=17% Similarity=0.281 Sum_probs=46.9
Q ss_pred eEEEEEccCchH--HHHHHHHHHHhhCCCCceEEEEEeCCCCCC---------CCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 36 KVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPDGENY---------KNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 36 ~~livtd~~~~~--~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~---------~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
++.|+....-.+ .+.+++.+.|.+.| +++.+ +..+.. ++....... +. ...++| +||.+
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~~g--~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~d---lvi~l 71 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEERG--AEVLI---EEKFLDFLKQDLKFHPSYDTFSDN-EE-LDGSAD---MVISI 71 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHCC--CEEEE---ecchhhhhccccccccccccccch-hh-cccCCC---EEEEE
Confidence 356666654332 36888888898888 66532 111100 000000000 11 112455 99999
Q ss_pred cC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 105 GG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 105 GG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
|| |+++-+++..+ ..++|++-|.+.
T Consensus 72 GGDGT~L~aa~~~~---~~~~PilGIN~G 97 (292)
T PRK01911 72 GGDGTFLRTATYVG---NSNIPILGINTG 97 (292)
T ss_pred CCcHHHHHHHHHhc---CCCCCEEEEecC
Confidence 98 77788877552 458899888765
No 148
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=66.40 E-value=30 Score=39.33 Aligned_cols=50 Identities=4% Similarity=0.037 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh--------cCCcEEEeccccc
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL--------RGVSFIQIPTTVM 134 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~--------~g~p~i~IPTTl~ 134 (365)
..+.+.+.+++.++| .+|.|||--..-.|..++-.+. .++|+|.||-|+-
T Consensus 788 ~~~~v~~~L~~~~Id---~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTID 845 (1328)
T PTZ00468 788 SNDFLSQLLSFFNMR---AIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLE 845 (1328)
T ss_pred hHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCcccc
Confidence 457788888999999 9999999877777766654322 4899999999973
No 149
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=66.15 E-value=51 Score=31.91 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=53.4
Q ss_pred cchhhhhccCCceEEEEEccCc--hHHHHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTV--APLYLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~--~~~~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
..++++.++ -+++.++++... .....+.+.+.+++.| +++.... ++.+. +..++...+.++++.+ + +
T Consensus 128 ~~~~l~~~~-~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~~~~---~~~d~~~~l~~i~~~~-~---v 197 (389)
T cd06352 128 VLALLRWFN-WHVAVVVYSDDSENCFFTLEALEAALREFN--LTVSHVVFMEDNS---GAEDLLEILQDIKRRS-R---I 197 (389)
T ss_pred HHHHHHHcC-ceEEEEEEecCCccHHHHHHHHHHHHHhcC--CeEEEEEEecCCc---cchhHHHHHHHhhhcc-e---E
Confidence 345555553 478888887665 5557888889998888 6654332 23221 1345666666666554 4 7
Q ss_pred EEEecCchHhhHHHHHHHHhhcCC
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
||..+.+ -|...++......|+
T Consensus 198 ii~~~~~--~~~~~~l~q~~~~g~ 219 (389)
T cd06352 198 IIMCGSS--EDVRELLLAAHDLGL 219 (389)
T ss_pred EEEECCH--HHHHHHHHHHHHcCC
Confidence 7777664 455555544444554
No 150
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=65.88 E-value=37 Score=31.88 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=57.1
Q ss_pred ccceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcC
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR 94 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~ 94 (365)
|.....+....++++.++ -+++.++++...+..-.+.+.+.+.+.| .++....++. .-+++...+..++..+
T Consensus 109 ~~~~~~~~a~~~~~~~~~-w~~vaii~~~~~~~~~l~~~~~~~~~~g--~~v~~~~~~~-----~~~d~~~~l~~i~~~~ 180 (324)
T cd06368 109 PSMRDLSDALLDLIKYFG-WRKFVYIYDSDEGLLRLQELLDALSPKG--IQVTVRRLDD-----DTDMYRPLLKEIKREK 180 (324)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEECCcHhHHHHHHHHHhhccCC--ceEEEEEecC-----CchHHHHHHHHHhhcc
Confidence 333333333355665553 5899999987655444455556666666 5544333322 1126888888888888
Q ss_pred CCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 95 LDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 95 ~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
++ +||..+-+ -|...++-.+...|+
T Consensus 181 ~d---~Vi~~~~~--~~~~~i~~qa~~~g~ 205 (324)
T cd06368 181 ER---RIILDCSP--ERLKEFLEQAVEVGM 205 (324)
T ss_pred Cc---eEEEECCH--HHHHHHHHHHHHhcc
Confidence 87 88776644 466666544444443
No 151
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.71 E-value=31 Score=33.06 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=48.3
Q ss_pred ceEEEEEccCchH--HHHHHHHHHHhhCCCCceEEEEEeCCC-C--CCCCH---------HHHHHHHHHHHHcCCCCcce
Q 017815 35 KKVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPDG-E--NYKNM---------DTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 35 ~~~livtd~~~~~--~~~~~v~~~L~~~g~~i~v~~~~~~~~-e--~~~~~---------~~v~~~~~~~~~~~~dr~~~ 100 (365)
+++.|+....-.+ .+.+++.+.|++.| +++.+ .+.. + ..+.. +... . +.+ ...+| +
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g--~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~D---l 71 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAG--WEVVR--ASSSGGILGYANPDQPVCHTGIDQLV-P-PGF-DSSMK---F 71 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCC--CEEEE--ecchhhhcCccccccccccccccccC-h-hhc-ccCcC---E
Confidence 4677887765433 27888888899888 66532 1110 0 00000 0000 0 111 12455 9
Q ss_pred EEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 101 FVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 101 IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+|.+|| |+++-++... ...++|++-|.+.
T Consensus 72 vi~iGGDGTlL~aar~~---~~~~iPilGIN~G 101 (305)
T PRK02649 72 AIVLGGDGTVLSAARQL---APCGIPLLTINTG 101 (305)
T ss_pred EEEEeCcHHHHHHHHHh---cCCCCcEEEEeCC
Confidence 999998 7777777654 2468999988754
No 152
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=65.62 E-value=57 Score=32.94 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=57.9
Q ss_pred chhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.++++.++ -+++-+|++..-+. ...+.+.+.+++.| +.+.... ++ ..++...+.+.+..+++.+.| .+|
T Consensus 178 ~~l~~~~~-W~~Vaii~~~~~yg~~~~~~~~~~~~~~g--i~i~~~~~i~---~~~~~~d~~~~l~~lk~~~~d---a~v 248 (472)
T cd06374 178 LDIVKRYN-WTYVSAVHTEGNYGESGMEAFKELAAHEG--LCIAHSDKIY---SNAGEQSFDRLLRKLRSRLPK---ARV 248 (472)
T ss_pred HHHHHHCC-CcEEEEEEecchHHHHHHHHHHHHHHHCC--eeEEEEEEec---CCCchHHHHHHHHHHHhcCCC---cEE
Confidence 44555543 47888888766543 36778888888888 6553221 22 133557788888888876655 433
Q ss_pred EecCchHhhHHHHHHHHhhcCC--cEEEeccc
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV--SFIQIPTT 132 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~--p~i~IPTT 132 (365)
-++-+...++..++-.+...|+ +++-|.|.
T Consensus 249 vv~~~~~~~~~~~l~~a~~~g~~~~~~wi~s~ 280 (472)
T cd06374 249 VVCFCEGMTVRGLLMAMRRLGVGGEFQLIGSD 280 (472)
T ss_pred EEEEechHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3332333455555544444554 24555444
No 153
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=65.01 E-value=1e+02 Score=28.23 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=50.9
Q ss_pred eEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 36 KVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
++=+++-.+ .+. +.+.-..-++..| ++++.+ ++-|- .-+.++...+++......+++|.+-| .=.-+-.
T Consensus 119 ~vgvlsAGT-SDlPvAeEa~~tae~lG--~ev~~~-~DvGV-----AGiHRLl~~l~r~~~~~~~~lIVvAG-MEGaLPs 188 (254)
T COG1691 119 KVGVLSAGT-SDLPVAEEAAVTAEELG--VEVQKV-YDVGV-----AGIHRLLSALKRLKIEDADVLIVVAG-MEGALPS 188 (254)
T ss_pred eEEEEecCC-CCcchHHHHHHHHHHhC--ceEEEE-Eeecc-----chHHhhhhHHHHHHhhCCCeEEEEcc-cccchHH
Confidence 444444443 344 5666666677788 777643 44443 35556655444333333336665543 2222333
Q ss_pred HHHHHhhcCCcEEEeccccccccccccCCc
Q 017815 115 YAAASYLRGVSFIQIPTTVMAQVDSSVGGK 144 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~ 144 (365)
.+|. +-..|+|.+||+. +=|+..++.
T Consensus 189 vvag--LvD~PVIavPTsV--GYG~g~gGi 214 (254)
T COG1691 189 VVAG--LVDVPVIAVPTSV--GYGAGGGGI 214 (254)
T ss_pred HHHh--ccCCCeEeccccc--ccCcCCccH
Confidence 3433 4689999999995 444444433
No 154
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=64.49 E-value=79 Score=30.71 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=51.8
Q ss_pred CCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 33 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 33 ~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
+.+++.++.+...+.. ..+.+.+.+++.| .++... .++.+ ..++...+.+++..++| +|+-.|.+.
T Consensus 160 ~~k~va~i~~d~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~~g-----~~D~~~~v~~l~~~~~d---~v~~~~~~~-- 227 (369)
T PRK15404 160 KPKRIAVLHDKQQYGEGLARSVKDGLKKAG--ANVVFFEGITAG-----DKDFSALIAKLKKENVD---FVYYGGYHP-- 227 (369)
T ss_pred CCCEEEEEeCCCchhHHHHHHHHHHHHHcC--CEEEEEEeeCCC-----CCchHHHHHHHHhcCCC---EEEECCCch--
Confidence 3689999998876543 6777888899988 665322 23322 23566677788888888 776444332
Q ss_pred hHHHHHHHHhhcCCc
Q 017815 111 DMCGYAAASYLRGVS 125 (365)
Q Consensus 111 D~ak~vA~~~~~g~p 125 (365)
|++.++-.....|+.
T Consensus 228 ~~~~~~k~~~~~G~~ 242 (369)
T PRK15404 228 EMGQILRQAREAGLK 242 (369)
T ss_pred HHHHHHHHHHHCCCC
Confidence 666666444445543
No 155
>PLN02204 diacylglycerol kinase
Probab=64.41 E-value=27 Score=36.59 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=43.8
Q ss_pred CceEEEEEccCchH----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHH---HcCCCCcceEEEecC
Q 017815 34 GKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI---ESRLDRRCTFVALGG 106 (365)
Q Consensus 34 ~~~~livtd~~~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~---~~~~dr~~~IIaiGG 106 (365)
.|+.+|+.++...+ ...+++...|..++ +++.+++-. . + ....+++..+. ..+.| .||++||
T Consensus 159 ~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~--i~~~v~~T~-~-a----ghA~d~~~~~~~~~l~~~D---~VVaVGG 227 (601)
T PLN02204 159 PKNLLVFVHPLSGKGSGSRTWETVSPIFIRAK--VKTKVIVTE-R-A----GHAFDVMASISNKELKSYD---GVIAVGG 227 (601)
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHHHcC--CeEEEEEec-C-c----chHHHHHHHHhhhhccCCC---EEEEEcC
Confidence 57889998876543 35668888999988 666543221 1 1 12333333322 23455 9999999
Q ss_pred -chHhhHHHHH
Q 017815 107 -GVIGDMCGYA 116 (365)
Q Consensus 107 -Gsv~D~ak~v 116 (365)
|++-.+.-.+
T Consensus 228 DGt~nEVlNGL 238 (601)
T PLN02204 228 DGFFNEILNGY 238 (601)
T ss_pred ccHHHHHHHHH
Confidence 6666665433
No 156
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=64.26 E-value=75 Score=28.74 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=27.1
Q ss_pred HcCCCCcceEEEecC-chH---h-------------hHHHHHHHHhhcCCcEEEecccc
Q 017815 92 ESRLDRRCTFVALGG-GVI---G-------------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 92 ~~~~dr~~~IIaiGG-Gsv---~-------------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+.+++.-|.|+--|| |.. . ++.+++...+..|.|+.+|+-..
T Consensus 80 ~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp 138 (217)
T PRK11780 80 EADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAP 138 (217)
T ss_pred HCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHH
Confidence 333444459999999 432 1 25566666677899999985543
No 157
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.17 E-value=46 Score=31.79 Aligned_cols=83 Identities=11% Similarity=0.133 Sum_probs=49.0
Q ss_pred ceEEEEEccCchH--HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhh
Q 017815 35 KKVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~--~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D 111 (365)
+|+++|..++-.+ ...+++.+.|.+.| +++.+.. ...+..+. .... .....++| +||++|| |+++.
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g--~~v~v~~-~~~~~~~~----~~~~-~~~~~~~d---~vi~~GGDGT~l~ 72 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARG--CKVLMGP-SGPKDNPY----PVFL-ASASELID---LAIVLGGDGTVLA 72 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCC--CEEEEec-Cchhhccc----cchh-hccccCcC---EEEEECCcHHHHH
Confidence 6788888875433 36788888898888 6654321 11111111 1111 11122344 9999988 66666
Q ss_pred HHHHHHHHhhcCCcEEEecc
Q 017815 112 MCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPT 131 (365)
++... ...++|++.|.+
T Consensus 73 ~~~~~---~~~~~pv~gin~ 89 (305)
T PRK02645 73 AARHL---APHDIPILSVNV 89 (305)
T ss_pred HHHHh---ccCCCCEEEEec
Confidence 66543 346899999988
No 158
>PLN02564 6-phosphofructokinase
Probab=63.92 E-value=13 Score=37.81 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH-hhcCCc--EEEecccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS-YLRGVS--FIQIPTTV 133 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~-~~~g~p--~i~IPTTl 133 (365)
...+++++.+++.++| .++.|||--.++.|..++-. -.+|+| +|.||=|.
T Consensus 163 ~~~~~iv~~L~~~~Id---~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTI 215 (484)
T PLN02564 163 HDTSKIVDSIQDRGIN---QVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTI 215 (484)
T ss_pred chHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccc
Confidence 3678999999999999 99999999999988776532 225755 99999997
No 159
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=62.03 E-value=53 Score=31.13 Aligned_cols=89 Identities=15% Similarity=0.028 Sum_probs=54.7
Q ss_pred cchhhhhcc-CCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 24 NNCLYYRHV-QGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 24 ~~~~l~~~~-~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
..+++++.. +.+|+.++++...+. ...+.+.+.+++.| +++... .++. ...+....+..+++.++| +
T Consensus 130 ~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~~-----~~~d~~~~v~~l~~~~~d---~ 199 (345)
T cd06338 130 LLEMLVALDPRPKKVAILYADDPFSQDVAEGAREKAEAAG--LEVVYDETYPP-----GTADLSPLISKAKAAGPD---A 199 (345)
T ss_pred HHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHHcC--CEEEEEeccCC-----CccchHHHHHHHHhcCCC---E
Confidence 345555543 258888888877554 36788888898888 665321 2222 224567777788888877 7
Q ss_pred EEEecCchHhhHHHHHHHHhhcCC
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
|+-.+.+. |...++-.....|+
T Consensus 200 i~~~~~~~--~~~~~~~~~~~~g~ 221 (345)
T cd06338 200 VVVAGHFP--DAVLLVRQMKELGY 221 (345)
T ss_pred EEECCcch--hHHHHHHHHHHcCC
Confidence 77665443 55555543334443
No 160
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.88 E-value=65 Score=30.83 Aligned_cols=79 Identities=14% Similarity=0.014 Sum_probs=51.2
Q ss_pred CceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 34 GKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+++.++++...+- ...+.+.+.+++.| +++... .++. ...++...+..++..++| +|+..+.+ -|
T Consensus 144 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~-----~~~d~~~~v~~i~~~~~d---~v~~~~~~--~~ 211 (362)
T cd06343 144 NAKIAVLYQNDDFGKDYLKGLKDGLGDAG--LEIVAETSYEV-----TEPDFDSQVAKLKAAGAD---VVVLATTP--KF 211 (362)
T ss_pred CceEEEEEeccHHHHHHHHHHHHHHHHcC--CeEEEEeeecC-----CCccHHHHHHHHHhcCCC---EEEEEcCc--HH
Confidence 57888888766554 36777888898888 665322 2332 234566777888888888 88877766 34
Q ss_pred HHHHHHHHhhcCC
Q 017815 112 MCGYAAASYLRGV 124 (365)
Q Consensus 112 ~ak~vA~~~~~g~ 124 (365)
.+.++......|.
T Consensus 212 ~~~~~~~~~~~g~ 224 (362)
T cd06343 212 AAQAIRKAAELGW 224 (362)
T ss_pred HHHHHHHHHHcCC
Confidence 5555544444554
No 161
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=61.86 E-value=1.2e+02 Score=29.10 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
...++++++...+.+-+.+|+++|+|+.+= +++++. .+..++++|.|...
T Consensus 169 ~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k-~~~~~~~vigVe~~ 219 (331)
T PRK03910 169 CALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLA-ALGPDIPVIGVTVS 219 (331)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH-HhCCCCeEEEEEec
Confidence 345677777644323356999999888652 333332 12345677666554
No 162
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.65 E-value=61 Score=32.01 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=58.0
Q ss_pred hhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 27 LYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 27 ~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
.+.++. ++++++++.+.... ..+++.+.+.... -.....+.+...+.-.++.+.++++.+ .+....+++|=+=|
T Consensus 6 sI~~~~-Pd~V~f~~S~~s~~-~~~~i~~~l~~~~--~~~~~~~~d~dD~~~~y~~l~~~l~~~--~~~~~~~v~vDiTG 79 (379)
T PF09670_consen 6 SIRELR-PDRVVFFCSEESKP-KAEQIRQQLGLSP--DQEEIVIVDPDDPLECYRKLREVLEKL--RDFPGHEVAVDITG 79 (379)
T ss_pred HHHHcC-CCEEEEEecccchh-hHHHHHHHHhccc--CCceEeeCCCCCHHHHHHHHHHHHHHH--hcCCCCeEEEECCC
Confidence 345554 68888888876654 3777778777654 122222223233334455555555555 23344568888866
Q ss_pred ch-HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 107 GV-IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 107 Gs-v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
|+ +|.++-++|+ ...++++.-|-+.
T Consensus 80 GTK~Msaglalaa-~~~~~~~~YV~~~ 105 (379)
T PF09670_consen 80 GTKSMSAGLALAA-IELGVELSYVDGE 105 (379)
T ss_pred CHHHHHHHHHHHH-HHcCCcEEEEecc
Confidence 65 5666655554 4568888877654
No 163
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=61.25 E-value=75 Score=30.17 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=51.4
Q ss_pred CceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 34 GKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 34 ~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
.+++.+++....+- ...+.+.+.+++.| +++..... ..+.-.++...+.++++.++| +|+-...|.. +.
T Consensus 136 ~~~v~~i~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~----~~~~~~d~~~~v~~l~~~~pd---~V~~~~~~~~-~~ 205 (333)
T cd06328 136 GKKIATLAQDYAFGRDGVAAFKAALEKLG--AAIVTEEY----APTDTTDFTPYAQRLLDALKK---VLFVIWAGAG-GP 205 (333)
T ss_pred CCeEEEEecCccccHHHHHHHHHHHHhCC--CEEeeeee----CCCCCcchHHHHHHHHhcCCC---EEEEEecCch-hH
Confidence 68888888877654 37788888999998 66532211 112334677778888888988 7755433332 67
Q ss_pred HHHHHHHhhcC
Q 017815 113 CGYAAASYLRG 123 (365)
Q Consensus 113 ak~vA~~~~~g 123 (365)
.+.+...-..|
T Consensus 206 ~~~~~~~~~~g 216 (333)
T cd06328 206 WPKLQQMGVLG 216 (333)
T ss_pred HHHHHHhhhhc
Confidence 77665443334
No 164
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=61.17 E-value=34 Score=28.95 Aligned_cols=88 Identities=11% Similarity=0.015 Sum_probs=52.4
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|=+|..-++ +.+.|.+.|++.| ++|.-+-..+.++..-.+...++.+.+.+..+||.=+|-+-|=|+.|=+-|
T Consensus 1 kI~igsDhaG~~-lK~~l~~~L~~~g--~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK- 76 (143)
T TIGR01120 1 KIAIGSDHAGFI-LKEEIKAFLVERG--VKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANK- 76 (143)
T ss_pred CEEEEeCcchHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHHHhc-
Confidence 356667776555 6889999999999 776544322334433445566777777776677533444444344333322
Q ss_pred HHHHhhcCCcEEEeccc
Q 017815 116 AAASYLRGVSFIQIPTT 132 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTT 132 (365)
..|++...+-..
T Consensus 77 -----~~GIraa~~~d~ 88 (143)
T TIGR01120 77 -----FAGIRAALCSEP 88 (143)
T ss_pred -----CCCeEEEEECCH
Confidence 367777666444
No 165
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=61.04 E-value=78 Score=31.14 Aligned_cols=91 Identities=5% Similarity=0.055 Sum_probs=55.1
Q ss_pred cchhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
..++++.+. -+++.++++...+. ...+.+.+.+++.| +++... .++.. .....++.+.+.+++..++| +|
T Consensus 167 l~~~l~~~~-~k~vaii~~~~~~g~~~~~~~~~~l~~~g--i~i~~~~~~~~~--~~~~~d~~~~l~~i~~~~~d---vI 238 (410)
T cd06363 167 MVQLLQEFG-WNWVAFLGSDDEYGRDGLQLFSELIANTG--ICIAYQGLIPLD--TDPETDYQQILKQINQTKVN---VI 238 (410)
T ss_pred HHHHHHHCC-CcEEEEEEeCChhHHHHHHHHHHHHHHCC--eEEEEEEEecCC--CchHHHHHHHHHHHhcCCCe---EE
Confidence 345555543 57888888765444 36788888999888 655322 22211 11356788888888877777 88
Q ss_pred EEecCchHhhHHHHHHHHhhcCC
Q 017815 102 VALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 102 IaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
|-.+.+. |.+.++-.+...|+
T Consensus 239 il~~~~~--~~~~il~qa~~~g~ 259 (410)
T cd06363 239 VVFASRQ--PAEAFFNSVIQQNL 259 (410)
T ss_pred EEEcChH--HHHHHHHHHHhcCC
Confidence 7766554 34444433333343
No 166
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=60.74 E-value=23 Score=33.33 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhhCCCCceE--EEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcC
Q 017815 46 APLYLDKVTDALTRGNPNVSV--ENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v--~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g 123 (365)
.+...+-+++.|++.| +.. ..+.+.+.+. +.+.+.++++.+...++| +|+++|.-...-+.+. ....
T Consensus 13 ~~~~~~gf~~~L~~~g--~~~~~~~~~~~~a~~--d~~~~~~~~~~l~~~~~D---lIi~~gt~aa~~~~~~----~~~~ 81 (294)
T PF04392_consen 13 LDDIVRGFKDGLKELG--YDEKNVEIEYKNAEG--DPEKLRQIARKLKAQKPD---LIIAIGTPAAQALAKH----LKDD 81 (294)
T ss_dssp HHHHHHHHHHHHHHTT----CCCEEEEEEE-TT---HHHHHHHHHHHCCTS-S---EEEEESHHHHHHHHHH-----SS-
T ss_pred HHHHHHHHHHHHHHcC--CccccEEEEEecCCC--CHHHHHHHHHHHhcCCCC---EEEEeCcHHHHHHHHh----cCCC
Confidence 3446777888888888 332 1223333333 678888888887776666 9999986655444432 2223
Q ss_pred CcEEEecc
Q 017815 124 VSFIQIPT 131 (365)
Q Consensus 124 ~p~i~IPT 131 (365)
+|++....
T Consensus 82 iPVVf~~V 89 (294)
T PF04392_consen 82 IPVVFCGV 89 (294)
T ss_dssp S-EEEECE
T ss_pred cEEEEEec
Confidence 89887655
No 167
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=60.70 E-value=18 Score=39.08 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh--------------------hcCCcEEEecccc---c
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTV---M 134 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------------~~g~p~i~IPTTl---~ 134 (365)
++.+...++++.+++.++| .+|.|||--.++.|..++.-+ ..++++|-||=|. +
T Consensus 78 ~~~~~~~~~~~~L~~~~Id---~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl 154 (745)
T TIGR02478 78 RERPGRLKAARNLIKRGID---NLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDM 154 (745)
T ss_pred cCHHHHHHHHHHHHHhCCC---EEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCC
Confidence 4556778999999999999 999999999999886543211 2389999999998 4
Q ss_pred cccccccCCceEE
Q 017815 135 AQVDSSVGGKTGI 147 (365)
Q Consensus 135 A~~~s~~~~~~~i 147 (365)
.+||-++|--+++
T Consensus 155 ~gTd~TiGfdTA~ 167 (745)
T TIGR02478 155 CGTDMTIGADSAL 167 (745)
T ss_pred CCCcCCCCHHHHH
Confidence 4666555544443
No 168
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=60.49 E-value=78 Score=24.53 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=47.7
Q ss_pred eEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 36 KVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
|++++++.++... +.+++.+.+++.| +++++... +...+... ..++| +|-++--..--..+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~--~~~~v~~~-------~~~~~~~~-----~~~~D----iil~~Pqv~~~~~~ 62 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRG--IDAEIEAV-------PESELEEY-----IDDAD----VVLLGPQVRYMLDE 62 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCC--CceEEEEe-------cHHHHHHh-----cCCCC----EEEEChhHHHHHHH
Confidence 5889999988765 7889999999998 65543322 33444421 13445 44444333333333
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
+....-..++|+..||..
T Consensus 63 i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 63 VKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHhccCCCcEEEcChH
Confidence 322233568999999877
No 169
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=59.46 E-value=1.2e+02 Score=28.68 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=50.3
Q ss_pred CceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 34 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+++.++++...+.. ..+.+.+.+++.| +++... .++ ++..++...+..+++.++| +|+..+.+. |
T Consensus 132 ~~~v~i~~~~~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~-----~~~~d~~~~v~~l~~~~pd---~v~~~~~~~--~ 199 (333)
T cd06358 132 ARRWYLIGNDYVWPRGSLAAAKRYIAELG--GEVVGEEYVP-----LGTTDFTSVLERIAASGAD---AVLSTLVGQ--D 199 (333)
T ss_pred CCeEEEEeccchhhHHHHHHHHHHHHHcC--CEEeeeeeec-----CChHHHHHHHHHHHHcCCC---EEEEeCCCC--c
Confidence 588999888765433 6677778888888 665321 222 3456778888889998888 777655442 3
Q ss_pred HHHHHHHHhhcCC
Q 017815 112 MCGYAAASYLRGV 124 (365)
Q Consensus 112 ~ak~vA~~~~~g~ 124 (365)
.+.++......|.
T Consensus 200 ~~~~~~~~~~~G~ 212 (333)
T cd06358 200 AVAFNRQFAAAGL 212 (333)
T ss_pred hHHHHHHHHHcCC
Confidence 3444433334454
No 170
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=59.45 E-value=72 Score=32.26 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=50.1
Q ss_pred ccceeeecccchhhhhccCCceEEEE-EccCchHHHHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVV-TNNTVAPLYLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~liv-td~~~~~~~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
|++...+....++++.++ -+++.+| .|........+.+.+.+++.| +.+.... ++.... .....+...+..+++
T Consensus 154 psd~~q~~ai~~li~~f~-W~~Vaiv~~d~~yg~~~~~~~~~~~~~~g--i~I~~~~~i~~~~~-~~~~~~~~~l~~i~~ 229 (469)
T cd06365 154 PKDTSLPLGMVSLMLHFS-WTWVGLVISDDDRGEQFLSDLREEMQRNG--ICLAFVEKIPVNMQ-LYLTRAEKYYNQIMT 229 (469)
T ss_pred CCchhHHHHHHHHHHhcC-CeEEEEEEecChhHHHHHHHHHHHHHHCC--eEEEEEEEecCCch-hhHHHHHHHHHHhhc
Confidence 333334444456666554 4666654 444444557888899999888 6553322 332221 112466667777776
Q ss_pred cCCCCcceEEEecCc
Q 017815 93 SRLDRRCTFVALGGG 107 (365)
Q Consensus 93 ~~~dr~~~IIaiGGG 107 (365)
.+++ +||..|..
T Consensus 230 ~~ar---vIvl~~~~ 241 (469)
T cd06365 230 SSAK---VIIIYGDT 241 (469)
T ss_pred CCCe---EEEEEcCc
Confidence 6666 88887753
No 171
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=59.24 E-value=73 Score=30.70 Aligned_cols=88 Identities=10% Similarity=0.031 Sum_probs=52.4
Q ss_pred hhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
+++.+..+.+|+.+++....+. ...+.+.+.+++.| +++...... ...-.++...+.+++..++| +|+..
T Consensus 126 ~~~~~~~g~k~v~~l~~d~~~g~~~~~~~~~~~~~~G--~~vv~~~~~----~~~~~D~s~~v~~l~~~~pD---av~~~ 196 (359)
T TIGR03407 126 DYLLSKKGAKRFFLLGSDYVFPRTANKIIKAYLKSLG--GTVVGEDYT----PLGHTDFQTIINKIKAFKPD---VVFNT 196 (359)
T ss_pred HHHHhccCCceEEEecCccHHHHHHHHHHHHHHHHcC--CEEEeeEEe----cCChHhHHHHHHHHHHhCCC---EEEEe
Confidence 3444432248888888765443 36666788888888 665322111 12446778888889999998 87765
Q ss_pred cCchHhhHHHHHHHHhhcCC
Q 017815 105 GGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~ 124 (365)
+.|. |.+.++...-..|.
T Consensus 197 ~~~~--~~~~~~~~~~~~G~ 214 (359)
T TIGR03407 197 LNGD--SNVAFFKQLKNAGI 214 (359)
T ss_pred ccCC--CHHHHHHHHHHcCC
Confidence 4442 34444433333444
No 172
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=59.02 E-value=64 Score=33.08 Aligned_cols=89 Identities=11% Similarity=0.208 Sum_probs=49.3
Q ss_pred CCceEEEEEccCchHH--HHHHHHHHHh-hCCCCceEEEEEeCCCCC-----CCCHHHHHHH---HHHH--HHcCCCCcc
Q 017815 33 QGKKVLVVTNNTVAPL--YLDKVTDALT-RGNPNVSVENVILPDGEN-----YKNMDTLMKV---FDKA--IESRLDRRC 99 (365)
Q Consensus 33 ~~~~~livtd~~~~~~--~~~~v~~~L~-~~g~~i~v~~~~~~~~e~-----~~~~~~v~~~---~~~~--~~~~~dr~~ 99 (365)
..++++||+.+.-.+. +..++.+.|. ..| +++. +-+.... ++... .... .+.. ...++|
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~g--i~V~--ve~~~a~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~D--- 264 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKG--LNIY--VEPRVKKELLSESSYFN-FVQTWEDEKEILLLHTKVD--- 264 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCC--CEEE--Eechhhhhhcccccccc-ccccccccchhhhcccCCC---
Confidence 3688999988654433 6778888887 466 5542 2111000 00000 0000 0010 112455
Q ss_pred eEEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 100 TFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 100 ~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+||.||| |+++-++... ...++|++.|.+.
T Consensus 265 lVIsiGGDGTlL~Aar~~---~~~~iPILGIN~G 295 (508)
T PLN02935 265 LVITLGGDGTVLWAASMF---KGPVPPVVPFSMG 295 (508)
T ss_pred EEEEECCcHHHHHHHHHh---ccCCCcEEEEeCC
Confidence 9999998 7888777654 2357888888644
No 173
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=58.79 E-value=40 Score=28.66 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=50.8
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
|+.|=+|..-++ +.+.|.+.|++.| ++|.-+--.+.+ +..-.+...++.+.+.+..++|.=+|-+-|=|+.|=+-|
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~g--~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK 78 (148)
T PRK05571 2 KIAIGSDHAGFE-LKEEIIEHLEELG--HEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANK 78 (148)
T ss_pred EEEEEeCCchHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhc
Confidence 567777776554 6889999999998 776443222222 333345567777777777677644444444444433333
Q ss_pred HHHHHhhcCCcEEEe
Q 017815 115 YAAASYLRGVSFIQI 129 (365)
Q Consensus 115 ~vA~~~~~g~p~i~I 129 (365)
..|++...+
T Consensus 79 ------~~GIRAA~~ 87 (148)
T PRK05571 79 ------VKGIRAALC 87 (148)
T ss_pred ------CCCeEEEEE
Confidence 357765555
No 174
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=58.75 E-value=1.3e+02 Score=29.38 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=58.2
Q ss_pred hhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcC-CCCcceEE
Q 017815 26 CLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESR-LDRRCTFV 102 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~-~dr~~~II 102 (365)
.+++.+. -+++.+|++...+ ....+.+.+.+++.| +++... .++ ++...+...+..+++.+ ++ +||
T Consensus 125 ~~~~~~~-w~~vaii~~~~~~~~~~~~~l~~~l~~~g--i~v~~~~~~~-----~~~~d~~~~L~~lk~~~~~~---viv 193 (382)
T cd06371 125 TVLRYFR-WAHVAIVSSPQDIWVETAQKLASALRAHG--LPVGLVTSMG-----PDEKGAREALKKVRSADRVR---VVI 193 (382)
T ss_pred HHHHHCC-CeEEEEEEecccchHHHHHHHHHHHHHCC--CcEEEEEEec-----CCHHHHHHHHHHHhcCCCcE---EEE
Confidence 4454444 5889999887653 347888888898888 555322 222 24467888888888765 45 777
Q ss_pred EecCchH---hhHHHHHHHHhhcCCc---EEEeccc
Q 017815 103 ALGGGVI---GDMCGYAAASYLRGVS---FIQIPTT 132 (365)
Q Consensus 103 aiGGGsv---~D~ak~vA~~~~~g~p---~i~IPTT 132 (365)
..+-... -+..-++..+...|+. ++.|++-
T Consensus 194 ~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~~d 229 (382)
T cd06371 194 MCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIPYD 229 (382)
T ss_pred EEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEEec
Confidence 6543211 1333344334455555 6777664
No 175
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=58.69 E-value=1.1e+02 Score=30.22 Aligned_cols=124 Identities=7% Similarity=-0.011 Sum_probs=57.9
Q ss_pred CCHHHHHhcHHHHH-HHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhcccc---------c
Q 017815 175 LPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRA---------T 244 (365)
Q Consensus 175 lP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~---------~ 244 (365)
++++++.+---... .-++ ..+.+.+|.+.+...+...+.+.+-..+.+.........|+.+...|. .
T Consensus 175 ~Dp~l~~s~P~~~ta~tg~---DAL~HaiE~y~s~~~~p~sd~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~as~laG 251 (383)
T PRK09860 175 NDSSLMIGMPKSLTAATGM---DALTHAIEAYVSIAATPITDACALKAVTMIAENLPLAVEDGSNAKAREAMAYAQFLAG 251 (383)
T ss_pred ECcHhhcCCCHHHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 56666666555554 3333 456666666554322222233332222222223333333333322221 1
Q ss_pred cCc---chhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 017815 245 LNL---GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 306 (365)
Q Consensus 245 l~~---gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~ 306 (365)
..+ |..+.|+|++. . .-.++..-+.+..+.+--..++. .+...+++.++.+.+|+..
T Consensus 252 ~a~~~~g~g~~Hal~h~--l-g~~~~ipHG~~~ai~lP~vl~~n--~~~~~~k~~~~a~~~g~~~ 311 (383)
T PRK09860 252 MAFNNASLGYVHAMAHQ--L-GGFYNLPHGVCNAVLLPHVQVFN--SKVAAARLRDCAAAMGVNV 311 (383)
T ss_pred HHHccccHHHHHHHhhH--H-hhCcCCCcHHHHHHHHHHHHHHh--hccCHHHHHHHHHHhCCCC
Confidence 122 45677888765 2 33455666655554433222222 2334567777777788753
No 176
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=58.58 E-value=1.1e+02 Score=28.93 Aligned_cols=79 Identities=15% Similarity=0.009 Sum_probs=49.6
Q ss_pred CceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 34 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+++.+++...-+.. ..+.+.+.+++.| +++... .++. ...++...+..++..++| +|+-.|.|. |
T Consensus 135 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~~-----~~~d~~~~v~~l~~~~~d---~v~~~~~~~--~ 202 (340)
T cd06349 135 FKKVAILSVNTDWGRTSADIFVKAAEKLG--GQVVAHEEYVP-----GEKDFRPTITRLRDANPD---AIILISYYN--D 202 (340)
T ss_pred CcEEEEEecCChHhHHHHHHHHHHHHHcC--CEEEEEEEeCC-----CCCcHHHHHHHHHhcCCC---EEEEccccc--h
Confidence 478888887765543 7788888998888 665321 2222 233566777788888888 777766554 4
Q ss_pred HHHHHHHHhhcCC
Q 017815 112 MCGYAAASYLRGV 124 (365)
Q Consensus 112 ~ak~vA~~~~~g~ 124 (365)
++.++......|.
T Consensus 203 ~~~~~~~~~~~g~ 215 (340)
T cd06349 203 GAPIARQARAVGL 215 (340)
T ss_pred HHHHHHHHHHcCC
Confidence 5555543333343
No 177
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=57.86 E-value=75 Score=32.59 Aligned_cols=99 Identities=10% Similarity=0.127 Sum_probs=59.4
Q ss_pred ccceeeecccchhhhhccCCceEEEE-EccCchHHHHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVV-TNNTVAPLYLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~liv-td~~~~~~~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
|+....+....++++.++ -+++-+| .|....+...+.+.+.+++.| +.+.... ++. ..+...+.+++..++.
T Consensus 169 psd~~q~~Ai~~l~~~f~-wk~VaiI~~dd~yG~~~~~~~~~~~~~~G--i~I~~~~~i~~---~~~~~d~~~~l~klk~ 242 (510)
T cd06364 169 PNDEHQATAMADIIEYFR-WNWVGTIAADDDYGRPGIEKFREEAEERD--ICIDFSELISQ---YSDEEEIQRVVEVIQN 242 (510)
T ss_pred CChHHHHHHHHHHHHHcC-CeEEEEEEecCcchHHHHHHHHHHHHHCC--cEEEEEEEeCC---CCCHHHHHHHHHHHHh
Confidence 444333444455566554 4776666 444454557888888999888 6653222 221 1245677788888877
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+++ +||..|.+ -|++.++-.+...|+
T Consensus 243 ~~a~---vVvl~~~~--~~~~~ll~qa~~~g~ 269 (510)
T cd06364 243 STAK---VIVVFSSG--PDLEPLIKEIVRRNI 269 (510)
T ss_pred cCCe---EEEEEeCc--HHHHHHHHHHHHhCC
Confidence 6666 88876655 366666654444443
No 178
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=57.67 E-value=83 Score=30.27 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhhCCCCc-eEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 46 APLYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i-~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+...+-+++.|++.| + ++. +.+.+.+- +...+.++++++...+.| +||++++=+..=+.+. ..++
T Consensus 44 Ld~~~~G~~~aLk~~G--~~n~~-i~~~na~~--~~~~a~~iarql~~~~~d---viv~i~tp~Aq~~~s~-----~~~i 110 (322)
T COG2984 44 LDAAREGVKEALKDAG--YKNVK-IDYQNAQG--DLGTAAQIARQLVGDKPD---VIVAIATPAAQALVSA-----TKTI 110 (322)
T ss_pred HHHHHHHHHHHHHhcC--ccCeE-EEeecCCC--ChHHHHHHHHHhhcCCCc---EEEecCCHHHHHHHHh-----cCCC
Confidence 3446788899999999 5 322 33344443 778899999888877766 9999987665544432 2457
Q ss_pred cEEEe
Q 017815 125 SFIQI 129 (365)
Q Consensus 125 p~i~I 129 (365)
|.+.-
T Consensus 111 PVV~a 115 (322)
T COG2984 111 PVVFA 115 (322)
T ss_pred CEEEE
Confidence 77764
No 179
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=57.61 E-value=1.7e+02 Score=28.21 Aligned_cols=31 Identities=13% Similarity=-0.019 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
.....++++++.+.+.+-+.+|+++|+|..+
T Consensus 173 ~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtl 203 (337)
T PRK12390 173 VGFAEEVRAQEAELGFKFDYIVVCSVTGSTQ 203 (337)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcchhH
Confidence 4567788877665443445689999988754
No 180
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=57.40 E-value=26 Score=39.83 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh-cC--CcEEEeccccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RG--VSFIQIPTTVM 134 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~-~g--~p~i~IPTTl~ 134 (365)
.+.+...++.+.+++.++| .+|.|||--.++.|..++-.+. .| +++|.||-|+-
T Consensus 180 ~~ee~~~~~le~lkkl~Id---~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTID 236 (1328)
T PTZ00468 180 ETEEQMRASLEICEKLKLH---GLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTID 236 (1328)
T ss_pred CCHHHHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEc
Confidence 3567889999999999999 9999999999988876654222 34 99999999973
No 181
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=57.09 E-value=50 Score=28.74 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=52.0
Q ss_pred eEEEEEccCc---h-HHHHHHHHHHHhhCCCCceE-EEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch--
Q 017815 36 KVLVVTNNTV---A-PLYLDKVTDALTRGNPNVSV-ENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-- 108 (365)
Q Consensus 36 ~~livtd~~~---~-~~~~~~v~~~L~~~g~~i~v-~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs-- 108 (365)
.++.|+|... . +.-++.+.+.|+++| .++ ...++++ +.+.+.+.+..+.+..+| +|+-.||=-
T Consensus 11 ~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag--~~~~~~~iV~D-----~~~~I~~~l~~~~~~~~D---vvlttGGTG~t 80 (169)
T COG0521 11 AVVTVSDRRSTGEYEDKSGPLLVELLEEAG--HNVAAYTIVPD-----DKEQIRATLIALIDEDVD---VVLTTGGTGIT 80 (169)
T ss_pred EEEEEecccccCCccccchhHHHHHHHHcC--CccceEEEeCC-----CHHHHHHHHHHHhcCCCC---EEEEcCCccCC
Confidence 4777777751 2 336788889999999 444 3334454 345555555555444477 999999843
Q ss_pred ----HhhHHHHHHHH-------hhcCCcEEE-ecccccc
Q 017815 109 ----IGDMCGYAAAS-------YLRGVSFIQ-IPTTVMA 135 (365)
Q Consensus 109 ----v~D~ak~vA~~-------~~~g~p~i~-IPTTl~A 135 (365)
+.++.+-++-. ..|-+.+-. .|+++++
T Consensus 81 ~RDvTpEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLS 119 (169)
T COG0521 81 PRDVTPEATRPLFDKEIPGFGELFRRLSLEEIGPTAILS 119 (169)
T ss_pred CCcCCHHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEe
Confidence 34555544211 122234445 6777644
No 182
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=57.03 E-value=58 Score=30.83 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=53.4
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
.+++.+.. .+|+.++.....+.. ..+.+.+.+++.| +++... ........++...+..+++.++| +|+-
T Consensus 127 ~~~~~~~~-~~~v~~i~~~~~~g~~~~~~~~~~~~~~G--~~vv~~----~~~~~~~~d~~~~v~~l~~~~~d---~v~~ 196 (334)
T cd06327 127 APALVKAG-GKKWFFLTADYAFGHSLERDARKVVKANG--GKVVGS----VRHPLGTSDFSSYLLQAQASGAD---VLVL 196 (334)
T ss_pred HHHHHHhc-CCeEEEEecchHHhHHHHHHHHHHHHhcC--CEEcCc----ccCCCCCccHHHHHHHHHhCCCC---EEEE
Confidence 34444433 688888887766543 7788888888888 654211 11122334667777888888887 7776
Q ss_pred ecCchHhhHHHHHHHHhhcCC
Q 017815 104 LGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+.| -|.+.++......|.
T Consensus 197 ~~~~--~~~~~~~~~~~~~g~ 215 (334)
T cd06327 197 ANAG--ADTVNAIKQAAEFGL 215 (334)
T ss_pred eccc--hhHHHHHHHHHHhCC
Confidence 6644 355555544444454
No 183
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.00 E-value=32 Score=32.18 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=23.9
Q ss_pred ceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 99 CTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 99 ~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
|++|.+|| |+.+-+++..+. ...++|++-|.+.
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~-~~~~iPilGIN~G 70 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYEN-QLDKVRFVGVHTG 70 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcc-cCCCCeEEEEeCC
Confidence 39999998 888888775521 1258898888764
No 184
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=56.84 E-value=61 Score=26.61 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch--HhhHHHHH
Q 017815 47 PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV--IGDMCGYA 116 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs--v~D~ak~v 116 (365)
+.-...+.+.|++.| +++... ++++ +.+.+.+.++.+.+. +| +||-.||=+ .-|.+.-+
T Consensus 18 d~n~~~l~~~l~~~G--~~v~~~~~v~D-----d~~~i~~~i~~~~~~-~D---lvittGG~g~g~~D~t~~a 79 (133)
T cd00758 18 DTNGPALEALLEDLG--CEVIYAGVVPD-----DADSIRAALIEASRE-AD---LVLTTGGTGVGRRDVTPEA 79 (133)
T ss_pred EchHHHHHHHHHHCC--CEEEEeeecCC-----CHHHHHHHHHHHHhc-CC---EEEECCCCCCCCCcchHHH
Confidence 335566777788888 666443 2222 556777777666543 56 999998766 45666544
No 185
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=56.80 E-value=28 Score=28.70 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=50.9
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHH-HHHHcCCCCcceEEEecCchHh---
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD-KAIESRLDRRCTFVALGGGVIG--- 110 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~-~~~~~~~dr~~~IIaiGGGsv~--- 110 (365)
+|+.|+.-++....-...+.+.|..+| +++.++. +.+.+..+...+.--.+ .+.+...+.-|.||-.||....
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~--~~v~vvs-~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~ 78 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAG--ANVKVVA-PTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFAL 78 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCC--CEEEEEe-cCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHH
Confidence 566666666655554556677787887 7776543 33333222111100000 0111111112488888874322
Q ss_pred ----hHHHHHHHHhhcCCcEEEecccc
Q 017815 111 ----DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 111 ----D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
++..++...+.++.++.+|.|..
T Consensus 79 ~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 79 APSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred ccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 25566666677899999998873
No 186
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=56.37 E-value=85 Score=30.35 Aligned_cols=44 Identities=5% Similarity=-0.213 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
..++.+.+++.++| +||+.++...+..++. ....++|++.+-|.
T Consensus 93 ~~~l~~~l~~~~pD---~Vi~~~~~~~~~~~~~---~~~~~ip~~~~~td 136 (380)
T PRK13609 93 RKRLKLLLQAEKPD---IVINTFPIIAVPELKK---QTGISIPTYNVLTD 136 (380)
T ss_pred HHHHHHHHHHhCcC---EEEEcChHHHHHHHHH---hcCCCCCeEEEeCC
Confidence 35677778888888 9999888776655432 23456888866553
No 187
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=56.35 E-value=81 Score=29.61 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=52.9
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+.. .+++.++++...+.. ..+.+.+.+++.| +++... .++. ...++...+.++++.++| .|+
T Consensus 126 ~~~l~~~~-~~~v~~l~~~~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~~-----~~~d~~~~v~~~~~~~pd---~v~ 194 (336)
T cd06360 126 GKYAADDG-YKKVVTVAWDYAFGYEVVEGFKEAFTEAG--GKIVKELWVPF-----GTSDFASYLAQIPDDVPD---AVF 194 (336)
T ss_pred HHHHHHcC-CCeEEEEeccchhhHHHHHHHHHHHHHcC--CEEEEEEecCC-----CCcchHHHHHHHHhcCCC---EEE
Confidence 45555543 688888887655433 5677888898888 665322 2222 234666777888888888 776
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
-.+. .-|.+.++-.....|.
T Consensus 195 ~~~~--~~~~~~~~~~~~~~g~ 214 (336)
T cd06360 195 VFFA--GGDAIKFVKQYDAAGL 214 (336)
T ss_pred Eecc--cccHHHHHHHHHHcCC
Confidence 5443 3445555543333444
No 188
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=56.22 E-value=96 Score=29.42 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=52.2
Q ss_pred chhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
.+++.+.. ++|+.+|+...-+. ...+.+.+.+++.| +++...... .+....+...+.+++..++| .|+.
T Consensus 124 ~~~~~~~~-~~~vail~~d~~~g~~~~~~~~~~~~~~G--~~vv~~~~~----~~~~~d~~~~v~~l~~~~pd---~v~~ 193 (334)
T cd06356 124 VPYMMEKY-GKKVYTIAADYNFGQISAEWVRKIVEENG--GEVVGEEFI----PLDVSDFGSTIQKIQAAKPD---FVMS 193 (334)
T ss_pred HHHHHHcc-CCeEEEECCCchhhHHHHHHHHHHHHHcC--CEEEeeeec----CCCchhHHHHHHHHHhcCCC---EEEE
Confidence 34444432 57777777655443 36777888899888 665322111 12345778888888988888 7776
Q ss_pred ecCchHhhHHHHHHHHhhcCC
Q 017815 104 LGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+-|. |.+.++......|.
T Consensus 194 ~~~~~--~~~~~~~~~~~~G~ 212 (334)
T cd06356 194 ILVGA--NHLSFYRQWAAAGL 212 (334)
T ss_pred eccCC--cHHHHHHHHHHcCC
Confidence 55333 34444433334454
No 189
>PTZ00287 6-phosphofructokinase; Provisional
Probab=55.77 E-value=31 Score=39.52 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh-hcCCc--EEEeccccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRGVS--FIQIPTTVM 134 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-~~g~p--~i~IPTTl~ 134 (365)
++.+.++++.+.+++.++| .+|-|||--.++.|..++-.+ ..++| +|.||-|..
T Consensus 255 ~~~e~~~ki~e~lkkl~Id---~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTID 311 (1419)
T PTZ00287 255 RNKDDLIAIENIVAKLKLN---GLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTID 311 (1419)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeec
Confidence 3457899999999999999 999999999999987776433 25777 699999973
No 190
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=55.72 E-value=49 Score=31.41 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=52.0
Q ss_pred chhhhhcc-CCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHV-QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~-~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.++++... +.+++.++.....+.. ..+.+.+.+++.|..+++. .........+++...+..+++.++| .|+
T Consensus 128 ~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v----~~~~~~~~~~d~~~~v~~i~~~~~d---~ii 200 (346)
T cd06330 128 ALYAAKLDKKAKTWATINPDYAYGQDAWADFKAALKRLRPDVEVV----SEQWPKLGAPDYGSEITALLAAKPD---AIF 200 (346)
T ss_pred HHHHHHhCcCccEEEEECCchHHHHHHHHHHHHHHHHhCCCCeec----ccccCCCCCcccHHHHHHHHhcCCC---EEE
Confidence 45555543 2578888886654433 5677888888775213321 1111122345677777788888888 888
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.++.| .|.+.++......|+
T Consensus 201 ~~~~~--~~~~~~~~~~~~~g~ 220 (346)
T cd06330 201 SSLWG--GDLVTFVRQANARGL 220 (346)
T ss_pred Eeccc--ccHHHHHHHHHhcCc
Confidence 77654 344555433333343
No 191
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=55.69 E-value=1.5e+02 Score=29.54 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=27.2
Q ss_pred ceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+.||++||+.=..++-.+--.+.-|.|-+.|-|-.
T Consensus 95 ~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST~A 129 (403)
T PF06792_consen 95 DGVIGIGGSGGTALATAAMRALPIGFPKLMVSTMA 129 (403)
T ss_pred cEEEEecCCccHHHHHHHHHhCCCCCCeEEEEccC
Confidence 49999999988888755544455688999998874
No 192
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=55.68 E-value=1.1e+02 Score=27.57 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=50.7
Q ss_pred cchhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
..++++..+ .+++.++.+...+ ....+.+.+.+++.| +++... .++.+ .+.....++.+++.+++ +|
T Consensus 127 ~~~~l~~~~-~~~v~iv~~~~~~~~~~~~~~~~~~~~~g--~~i~~~~~~~~~-----~~~~~~~~~~l~~~~~~---~v 195 (299)
T cd04509 127 LADYIKEYN-WKKVAILYDDDSYGRGLLEAFKAAFKKKG--GTVVGEEYYPLG-----TTDFTSLLQKLKAAKPD---VI 195 (299)
T ss_pred HHHHHHHcC-CcEEEEEecCchHHHHHHHHHHHHHHHcC--CEEEEEecCCCC-----CccHHHHHHHHHhcCCC---EE
Confidence 355666553 5788888776543 335666777888887 554321 12211 13566666777766666 88
Q ss_pred EEecCchHhhHHHHHHHHhhcCC
Q 017815 102 VALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 102 IaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+..+.+ -++..++......|+
T Consensus 196 ~~~~~~--~~~~~~~~~~~~~g~ 216 (299)
T cd04509 196 VLCGSG--EDAATILKQAAEAGL 216 (299)
T ss_pred EEcccc--hHHHHHHHHHHHcCC
Confidence 888774 344444433334444
No 193
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=55.60 E-value=25 Score=37.96 Aligned_cols=68 Identities=7% Similarity=0.234 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh--------------------hcCCcEEEecccc---c
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTV---M 134 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------------~~g~p~i~IPTTl---~ 134 (365)
++.+...++++.+++.++| .+|.|||--.++.|.....-| ..++++|.||=|. +
T Consensus 81 ~~~e~~~~a~~~L~~~~Id---~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl 157 (762)
T cd00764 81 REREGRLQAAYNLIQRGIT---NLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDF 157 (762)
T ss_pred cCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCC
Confidence 3456788999999999999 999999999998886443111 2378999999998 4
Q ss_pred cccccccCCceEEe
Q 017815 135 AQVDSSVGGKTGIN 148 (365)
Q Consensus 135 A~~~s~~~~~~~i~ 148 (365)
.+||-++|-.++++
T Consensus 158 ~gTD~TiGfdTAl~ 171 (762)
T cd00764 158 CGTDMTIGTDSALH 171 (762)
T ss_pred CCCcCCCCHHHHHH
Confidence 57776666554443
No 194
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=55.56 E-value=82 Score=26.43 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=37.0
Q ss_pred eEEEEEccCc---hHHHHHHHHHHHhhCCCCce---EEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec----
Q 017815 36 KVLVVTNNTV---APLYLDKVTDALTRGNPNVS---VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG---- 105 (365)
Q Consensus 36 ~~livtd~~~---~~~~~~~v~~~L~~~g~~i~---v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG---- 105 (365)
|+.||..+-- .+...+-..+.|++.| +. +..+.+|+ .+|-=..+-..++..++| .||++|
T Consensus 2 ri~IV~s~~n~~i~~~L~~ga~~~l~~~g--~~~~~i~v~~VPG-----a~EiP~a~~~l~~~~~~D---avI~LG~VIr 71 (138)
T TIGR00114 2 RVGIVIARFNRDITDMLLKGAIDALKRLG--AEVDNIDVIWVPG-----AFELPLAVKKLAETGKYD---AVIALGCVIR 71 (138)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcC--CCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEEeeEEe
Confidence 5667766543 3335566666788887 43 34555564 333333333333445566 999999
Q ss_pred CchHh
Q 017815 106 GGVIG 110 (365)
Q Consensus 106 GGsv~ 110 (365)
|++..
T Consensus 72 G~T~H 76 (138)
T TIGR00114 72 GGTPH 76 (138)
T ss_pred CCCch
Confidence 55554
No 195
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=55.53 E-value=87 Score=26.40 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=36.1
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCCce---EEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVS---VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~i~---v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG 105 (365)
+.|+.||..+.-.+ .+.+-..+.|.+.| ++ +.++.+|+ .+|-=..+-..++..++| .||++|
T Consensus 7 ~~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~g--v~~~~i~v~~VPG-----a~EiP~a~~~l~~s~~~D---avIaLG 74 (141)
T PLN02404 7 GLRFGVVVARFNEIITKNLLEGALETFKRYS--VKEENIDVVWVPG-----SFEIPVVAQRLAKSGKYD---AILCIG 74 (141)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcC--CCccceEEEEcCc-----HHHHHHHHHHHHhcCCCC---EEEEEE
Confidence 46888888765333 35555566788887 53 45556665 333322222333334455 999999
No 196
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=55.47 E-value=99 Score=31.16 Aligned_cols=99 Identities=11% Similarity=-0.001 Sum_probs=60.8
Q ss_pred eecccchhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHH-cCCC
Q 017815 20 LLISNNCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIE-SRLD 96 (365)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~-~~~d 96 (365)
.+....++++.++ -+++.+|++..-+. ...+.+.+.+++.| +.+... .++ ..++...+..++..+++ .+++
T Consensus 161 qa~ai~~ll~~~~-W~~Vaii~~~~~yG~~~~~~~~~~~~~~g--i~i~~~~~i~---~~~~~~d~~~~l~~l~~~~~a~ 234 (458)
T cd06375 161 QAKAMAEILRFFN-WTYVSTVASEGDYGETGIEAFEQEARLRN--ICIATSEKVG---RSADRKSYDSVIRKLLQKPNAR 234 (458)
T ss_pred HHHHHHHHHHHCC-CeEEEEEEeCchHHHHHHHHHHHHHHHCC--eeEEEEEEec---CCCCHHHHHHHHHHHhccCCCE
Confidence 3333455666554 57888888765443 46778888888888 554321 122 23345677777777654 4555
Q ss_pred CcceEEEecCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 97 RRCTFVALGGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 97 r~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
+||..|. .-|+..++..+...|+...-|
T Consensus 235 ---vVvl~~~--~~~~~~ll~~a~~~g~~~~wi 262 (458)
T cd06375 235 ---VVVLFTR--SEDARELLAAAKRLNASFTWV 262 (458)
T ss_pred ---EEEEecC--hHHHHHHHHHHHHcCCcEEEE
Confidence 7776664 467777776666677764444
No 197
>PRK13761 hypothetical protein; Provisional
Probab=55.33 E-value=37 Score=30.98 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=50.4
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
.+++.+|=.+.++..+..+.+.+.-+..|..++|+.|. .|.+-++++.+.++++|++ .|.|++-
T Consensus 66 lA~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNLF~-------RT~eR~~~I~~~l~~~Ga~---~vlG~~~ 129 (248)
T PRK13761 66 LAKHPVISVNGNTAALVPEEIVELAEALNAKLEVNLFY-------RTEERVEKIAEVLREHGAK---EVLGTDE 129 (248)
T ss_pred hcCCCeEEEcchHHhhChHHHHHHHHHhCCCEEEEecc-------CCHHHHHHHHHHHHHcCCc---eeeCCCC
Confidence 36888999999998887777776555444447877652 4789999999999999999 8888874
No 198
>PLN02929 NADH kinase
Probab=55.28 E-value=52 Score=31.44 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHHHHHHHHhhcC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRG 123 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ak~vA~~~~~g 123 (365)
+.+...+.+.+.|++.| +++... ... .+ .. ...++| +||++|| |+++-++.++ ..+
T Consensus 31 ~h~~~~~~~~~~L~~~g--i~~~~v--~r~----~~---~~-----~~~~~D---lvi~lGGDGT~L~aa~~~----~~~ 87 (301)
T PLN02929 31 VHKDTVNFCKDILQQKS--VDWECV--LRN----EL---SQ-----PIRDVD---LVVAVGGDGTLLQASHFL----DDS 87 (301)
T ss_pred hhHHHHHHHHHHHHHcC--CEEEEe--ecc----cc---cc-----ccCCCC---EEEEECCcHHHHHHHHHc----CCC
Confidence 44557788899999998 665322 111 11 00 012445 9999998 6766666543 567
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|++-|-+-
T Consensus 88 iPvlGIN~G 96 (301)
T PLN02929 88 IPVLGVNSD 96 (301)
T ss_pred CcEEEEECC
Confidence 899888764
No 199
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=55.23 E-value=59 Score=27.94 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEEecCchHh
Q 017815 49 YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIaiGGGsv~ 110 (365)
-...+...|++.| +++..+ ++++ +.+.+.+.++.+.+ .++| +||--||-++.
T Consensus 23 n~~~l~~~L~~~G--~~v~~~~iv~D-----d~~~i~~~l~~~~~~~~~D---lVIttGGtg~g 76 (163)
T TIGR02667 23 SGQYLVERLTEAG--HRLADRAIVKD-----DIYQIRAQVSAWIADPDVQ---VILITGGTGFT 76 (163)
T ss_pred cHHHHHHHHHHCC--CeEEEEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCcCCC
Confidence 4556677788888 665433 2332 55667777666543 4566 99999876654
No 200
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.07 E-value=34 Score=35.75 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=49.6
Q ss_pred CceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHH-HHHHHHHHH-HcCCCCcceEEEecC-ch
Q 017815 34 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDT-LMKVFDKAI-ESRLDRRCTFVALGG-GV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~-v~~~~~~~~-~~~~dr~~~IIaiGG-Gs 108 (365)
.+++.||....-.+. +.+++.+.|.+.| +++.+. +. .. ..+.. ..+...... ..++| +||.+|| |+
T Consensus 290 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~--~~v~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~d---lvi~lGGDGT 360 (569)
T PRK14076 290 PTKFGIVSRIDNEEAINLALKIIKYLDSKG--IPYELE--SF-LY-NKLKNRLNEECNLIDDIEEIS---HIISIGGDGT 360 (569)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHHCC--CEEEEe--ch-hh-hhhcccccccccccccccCCC---EEEEECCcHH
Confidence 678999987654333 6788888888887 664321 11 00 00000 000000000 01345 9999998 78
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++-++... ...++|++-|.+.
T Consensus 361 ~L~aa~~~---~~~~~PilGin~G 381 (569)
T PRK14076 361 VLRASKLV---NGEEIPIICINMG 381 (569)
T ss_pred HHHHHHHh---cCCCCCEEEEcCC
Confidence 88777654 2468898888765
No 201
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=55.01 E-value=26 Score=26.93 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH----hhcCCcEEEeccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS----YLRGVSFIQIPTT 132 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~----~~~g~p~i~IPTT 132 (365)
.-...+...+++.+.- .|-|+|.|.+--..|.+|.+ ...|+.++++|.-
T Consensus 14 ~vAgAIa~~lre~~~v---~lqaiGa~AvnqAvKAIAiAR~~l~~~g~dl~~~P~F 66 (86)
T PF04232_consen 14 AVAGAIAGVLREGGKV---ELQAIGAGAVNQAVKAIAIARGYLAPDGIDLVCVPAF 66 (86)
T ss_dssp HHHHHHHHHHHHTSEE---EEEE-SHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCcE---EEEEECHHHHHHHHHHHHHHHHhhhhhCceEEEEeeE
Confidence 4566777788887766 89999999999999999764 2468999999976
No 202
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=54.96 E-value=48 Score=28.90 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=49.5
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|=+|..-++ +.+.|.+.|++.| ++|.-+--...++..-.+...++.+.+.+..++|.=+|-+=|=|..|=+-
T Consensus 2 kI~IgsDhaG~~-lK~~l~~~L~~~G--~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN-- 76 (171)
T PRK08622 2 KIAIGCDHIVTD-EKMAVSDYLKSKG--HEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVN-- 76 (171)
T ss_pred EEEEEeCcchHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHHh--
Confidence 466777776554 6889999999999 77654432223443344556677777777666753333333333333222
Q ss_pred HHHHhhcCCcEEEe
Q 017815 116 AAASYLRGVSFIQI 129 (365)
Q Consensus 116 vA~~~~~g~p~i~I 129 (365)
-..|++...+
T Consensus 77 ----Kv~GIRAA~~ 86 (171)
T PRK08622 77 ----KVPGIRSALV 86 (171)
T ss_pred ----cCCCeEEEEe
Confidence 2357765555
No 203
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=54.31 E-value=55 Score=28.56 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=51.3
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|=+|..-.+ +.+.|.+.|++.| ++|.-+--...++..-.+...++.+.+.+..++|.=+|-+-|=|..|=+-
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~siaAN-- 76 (171)
T TIGR01119 2 KIAIGCDHIVTD-VKMEVSEFLKSKG--YEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGINNAVN-- 76 (171)
T ss_pred EEEEEeCCchHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh--
Confidence 566777776554 6889999999999 77754432223443344556677777766667753333333333333222
Q ss_pred HHHHhhcCCcEEEeccc
Q 017815 116 AAASYLRGVSFIQIPTT 132 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTT 132 (365)
-..|++...+-..
T Consensus 77 ----Kv~GIRAAl~~d~ 89 (171)
T TIGR01119 77 ----KVPGVRSALVRDM 89 (171)
T ss_pred ----cCCCeEEEEeCCH
Confidence 2357776666443
No 204
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=54.15 E-value=56 Score=27.91 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=53.4
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhh--CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~--~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
.|+.|=+|..-++ +.+.|.+.|++ .| ++|.-+--.+.++..-.+-..++++.+.+..++|.=+|-+-|=|..|=.
T Consensus 3 mkI~igsDhaG~~-lK~~l~~~L~~~~~g--~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~siaA 79 (151)
T PTZ00215 3 KKVAIGSDHAGFD-LKNEIIDYIKNKGKE--YKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGISIAA 79 (151)
T ss_pred cEEEEEeCCchHH-HHHHHHHHHHhccCC--CEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHHHHHH
Confidence 4677778877655 68899999999 88 7765443223344334445667777777766675333444443443333
Q ss_pred HHHHHHHhhcCCcEEEeccc
Q 017815 113 CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPTT 132 (365)
-| ..|++...+-..
T Consensus 80 NK------~~GIRAa~~~d~ 93 (151)
T PTZ00215 80 NK------VKGIRCALCHDH 93 (151)
T ss_pred hc------CCCeEEEEECCH
Confidence 32 357776666444
No 205
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=53.78 E-value=88 Score=28.63 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=60.7
Q ss_pred EEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHH
Q 017815 37 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 116 (365)
Q Consensus 37 ~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~v 116 (365)
.|+.++... .+-+.+.|.+.| |.|.-+++...+++|+ ...++.+.+++.+ +-|.|+.++=.++.-.-++.
T Consensus 136 LLfpcGn~~----rdil~kkL~~~G--~~Vds~~VY~T~~hp~--~~~~~~~alk~~~--~~d~ivfFSPsgv~~~lq~f 205 (260)
T KOG4132|consen 136 LLFPCGNLR----RDILPKKLHDKG--IRVDSCEVYETREHPD--GFKQFIHALKECG--FIDWIVFFSPSGVKSSLQYF 205 (260)
T ss_pred eEEEcccch----hHHHHHHHHhCC--ceeeEEEEEeeeeccc--HHHHHHHHHHhcC--CcceEEEECcchHHHHHHHH
Confidence 566666543 455666788899 8887666666776554 5667777777775 55699999999999888887
Q ss_pred HHHh--hcCCcEEEe-ccccc
Q 017815 117 AASY--LRGVSFIQI-PTTVM 134 (365)
Q Consensus 117 A~~~--~~g~p~i~I-PTTl~ 134 (365)
...- ...+.+++| |||--
T Consensus 206 ~~~~~s~~~~k~aaIGPtT~k 226 (260)
T KOG4132|consen 206 GDSNRSGDHLKLAAIGPTTRK 226 (260)
T ss_pred HHhccchhheeEEEeCcchHH
Confidence 4322 234677776 66643
No 206
>PRK02399 hypothetical protein; Provisional
Probab=53.34 E-value=44 Score=33.23 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=28.2
Q ss_pred ceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+.||++||+.=.+++-.+--.+.-|+|-+.|-|-.
T Consensus 97 ~gviglGGs~GT~lat~aMr~LPiG~PKlmVSTmA 131 (406)
T PRK02399 97 AGVIGLGGSGGTALATPAMRALPIGVPKLMVSTMA 131 (406)
T ss_pred cEEEEecCcchHHHHHHHHHhCCCCCCeEEEEccc
Confidence 49999999999888865544456788999998874
No 207
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=53.18 E-value=37 Score=29.74 Aligned_cols=98 Identities=14% Similarity=0.016 Sum_probs=50.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCC--CCCCCHHHHHHHHH-HHHHcCCCCcceEEEecCc-hH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDG--ENYKNMDTLMKVFD-KAIESRLDRRCTFVALGGG-VI 109 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~--e~~~~~~~v~~~~~-~~~~~~~dr~~~IIaiGGG-sv 109 (365)
.||++|+..++....=.-...+.|.++| +++........ ++-.+...+.=-.+ .+.+...++-|.|+-.||. ..
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag--~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~ 79 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGG--IKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA 79 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCC--CeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh
Confidence 4688888888877652333345566667 66544333211 11111000000000 1111111223488877773 22
Q ss_pred h------hHHHHHHHHhhcCCcEEEecccc
Q 017815 110 G------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 110 ~------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
- .+.+++...+.+|.++.+|.|..
T Consensus 80 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 109 (196)
T PRK11574 80 ECFRDSPLLVETVRQFHRSGRIVAAICAAP 109 (196)
T ss_pred hhhhhCHHHHHHHHHHHHCCCEEEEECHhH
Confidence 2 25666666677899999999984
No 208
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=53.11 E-value=76 Score=30.01 Aligned_cols=82 Identities=10% Similarity=0.095 Sum_probs=47.4
Q ss_pred chhhhhccCCceEEEEE-ccC-chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVT-NNT-VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livt-d~~-~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+.+ .+|+.++. +.. ..+...+.+++.+++.| +++....... +...+....+.++++.++| +|+
T Consensus 124 ~~~l~~~g-~~~~~~i~~~~~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~----~~~~d~~~~~~~i~~~~pd---aV~ 193 (341)
T cd06341 124 GDFAKDQG-GTRAVALVTALSAAVSAAAALLARSLAAAG--VSVAGIVVIT----ATAPDPTPQAQQAAAAGAD---AII 193 (341)
T ss_pred HHHHHHcC-CcEEEEEEeCCcHHHHHHHHHHHHHHHHcC--CccccccccC----CCCCCHHHHHHHHHhcCCC---EEE
Confidence 45565553 56776664 443 22336777888898888 5543221111 1223455666777777777 888
Q ss_pred EecCc-hHhhHHHHH
Q 017815 103 ALGGG-VIGDMCGYA 116 (365)
Q Consensus 103 aiGGG-sv~D~ak~v 116 (365)
..+.+ ....+.|.+
T Consensus 194 ~~~~~~~a~~~~~~~ 208 (341)
T cd06341 194 TVLDAAVCASVLKAV 208 (341)
T ss_pred EecChHHHHHHHHHH
Confidence 87766 544555444
No 209
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=52.85 E-value=1.2e+02 Score=28.76 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=51.2
Q ss_pred CceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 34 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+|+.++.+...+.. ..+.+.+.+++.| +++... .++.+ ...+...+..+++.++| .|+..+.+. |
T Consensus 144 ~~~va~l~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~~-----~~d~~~~v~~l~~~~~d---~v~~~~~~~--~ 211 (344)
T cd06345 144 FKTAAIVAEDAAWGKGIDAGIKALLPEAG--LEVVSVERFSPD-----TTDFTPILQQIKAADPD---VIIAGFSGN--V 211 (344)
T ss_pred CceEEEEecCchhhhHHHHHHHHHHHHcC--CeEEEEEecCCC-----CCchHHHHHHHHhcCCC---EEEEeecCc--h
Confidence 578888888775544 6778888888888 665332 22222 23466777777888877 777766553 5
Q ss_pred HHHHHHHHhhcCCc
Q 017815 112 MCGYAAASYLRGVS 125 (365)
Q Consensus 112 ~ak~vA~~~~~g~p 125 (365)
.+.++......|.+
T Consensus 212 ~~~~~~~~~~~g~~ 225 (344)
T cd06345 212 GVLFTQQWAEQKVP 225 (344)
T ss_pred HHHHHHHHHHcCCC
Confidence 55555444455653
No 210
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=52.38 E-value=56 Score=28.50 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=50.8
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|-+|..-++ +.+.|.+.|++.| ++|.-+--.+.++..-.+...++.+.+.+..++|.=+|-+-|=|..|=+
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaA--- 75 (171)
T PRK12615 2 KIAIGCDHIVTN-EKMAVSDFLKSKG--YDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAV--- 75 (171)
T ss_pred EEEEEeCchhHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHH---
Confidence 566777776555 6889999999999 7764433222334334455667777777766664223333332333222
Q ss_pred HHHHhhcCCcEEEeccc
Q 017815 116 AAASYLRGVSFIQIPTT 132 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTT 132 (365)
--..|++...+-..
T Consensus 76 ---NK~~GIRAA~~~d~ 89 (171)
T PRK12615 76 ---NKVPGIRSALVRDM 89 (171)
T ss_pred ---hcCCCeEEEEeCCH
Confidence 22357776666444
No 211
>PLN02199 shikimate kinase
Probab=52.26 E-value=7.4 Score=37.10 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=33.4
Q ss_pred ccceecccccccccceeeecccchhhhhccCCceEEEEEccCchHH-HHHHHHHHH
Q 017815 3 PKALLYKDRFFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDAL 57 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L 57 (365)
|-+++++-.+| |-+.-.+....+.++.+..++++++|-..+..+. ++..+.+.|
T Consensus 72 ~~~~le~~~~~-~~de~~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~L 126 (303)
T PLN02199 72 SSALLETGSVY-PFDEDILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVL 126 (303)
T ss_pred chhhcccCCCC-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44566666776 5444445555666666555677777777777776 555555544
No 212
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=52.23 E-value=80 Score=30.15 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=51.3
Q ss_pred CceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 34 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+|+.++++...+.. ..+.+.+.+++.| +++... .++ +...++...+.++++.++| +|+-.+. .-|
T Consensus 144 ~~~v~~l~~~~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~-----~~~~d~~~~i~~l~~~~~d---~v~~~~~--~~~ 211 (347)
T cd06340 144 LKTVALVHEDTEFGTSVAEAIKKFAKERG--FEIVEDISYP-----ANARDLTSEVLKLKAANPD---AILPASY--TND 211 (347)
T ss_pred CceEEEEecCchHhHHHHHHHHHHHHHcC--CEEEEeeccC-----CCCcchHHHHHHHHhcCCC---EEEEccc--chh
Confidence 378999998776654 7777888898888 665322 222 1234667777788888888 7765543 356
Q ss_pred HHHHHHHHhhcCC
Q 017815 112 MCGYAAASYLRGV 124 (365)
Q Consensus 112 ~ak~vA~~~~~g~ 124 (365)
.+.++-.....|.
T Consensus 212 ~~~~~~~~~~~G~ 224 (347)
T cd06340 212 AILLVRTMKEQRV 224 (347)
T ss_pred HHHHHHHHHHcCC
Confidence 6666654444554
No 213
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=51.05 E-value=1.4e+02 Score=29.14 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=48.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceE--EE-EEeCCCCCCCC-----HHHHHHHHHHHHHcCCCCcceEEEec-
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSV--EN-VILPDGENYKN-----MDTLMKVFDKAIESRLDRRCTFVALG- 105 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v--~~-~~~~~~e~~~~-----~~~v~~~~~~~~~~~~dr~~~IIaiG- 105 (365)
+-.+|+|++...+.++..+..... .| +.+ .. +.+. +..+.+ -..+.++.+.+.+.++| +|+..|
T Consensus 30 ~~~lv~tGqH~~~~~g~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Pd---~vlv~GD 102 (365)
T TIGR03568 30 ELQLIVTGMHLSPEYGNTVNEIEK-DG--FDIDEKIEILLD-SDSNAGMAKSMGLTIIGFSDAFERLKPD---LVVVLGD 102 (365)
T ss_pred cEEEEEeCCCCChhhccHHHHHHH-cC--CCCCCccccccC-CCCCCCHHHHHHHHHHHHHHHHHHhCCC---EEEEeCC
Confidence 568899998875544322322222 22 221 11 1111 111112 23356677777888888 999999
Q ss_pred CchHhhHHHHHHHHhhcCCcEEEec
Q 017815 106 GGVIGDMCGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 106 GGsv~D~ak~vA~~~~~g~p~i~IP 130 (365)
+.+++..| +| ++..++|++.|=
T Consensus 103 ~~~~la~a--la-A~~~~IPv~Hve 124 (365)
T TIGR03568 103 RFEMLAAA--IA-AALLNIPIAHIH 124 (365)
T ss_pred chHHHHHH--HH-HHHhCCcEEEEE
Confidence 55666555 33 456899999873
No 214
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=50.70 E-value=1.5e+02 Score=27.66 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 49 YLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..++..+.+.+.| ++-. ++. ..|| ..-|.++-.++++.+.+.-.+|-.+++++|+.++-|+.+.+-.+...|...
T Consensus 22 ~~~~~i~~l~~~G--v~gl-~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~ 98 (284)
T cd00950 22 ALERLIEFQIENG--TDGL-VVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADA 98 (284)
T ss_pred HHHHHHHHHHHcC--CCEE-EECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCE
Confidence 4455555666677 5432 222 2345 367888889999888887555556899999999999988887666778775
Q ss_pred EEe
Q 017815 127 IQI 129 (365)
Q Consensus 127 i~I 129 (365)
+.+
T Consensus 99 v~~ 101 (284)
T cd00950 99 ALV 101 (284)
T ss_pred EEE
Confidence 554
No 215
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=50.43 E-value=55 Score=27.61 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHh
Q 017815 48 LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG 110 (365)
Q Consensus 48 ~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~ 110 (365)
.....+.+.|++.| +++... ++++ +.+.+.+.++.+.+. ++| +||..||-++.
T Consensus 20 ~n~~~l~~~l~~~G--~~v~~~~~v~D-----d~~~i~~~l~~~~~~~~~D---lVittGG~s~g 74 (152)
T cd00886 20 RSGPALVELLEEAG--HEVVAYEIVPD-----DKDEIREALIEWADEDGVD---LILTTGGTGLA 74 (152)
T ss_pred chHHHHHHHHHHcC--CeeeeEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCcCCC
Confidence 35566777888888 665433 2232 456666666655442 445 99999887764
No 216
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=50.36 E-value=1.9e+02 Score=26.06 Aligned_cols=76 Identities=9% Similarity=0.107 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhC---CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH-hhHHHHHHHHhhc
Q 017815 47 PLYLDKVTDALTRG---NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI-GDMCGYAAASYLR 122 (365)
Q Consensus 47 ~~~~~~v~~~L~~~---g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv-~D~ak~vA~~~~~ 122 (365)
..+.+-+.+.+++. | +++.+.+++.. . +.+...+.++.+...++| .||..+.... ++ +.+..+...
T Consensus 15 ~~~~~~i~~~~~~~~~~g--~~~~l~i~~~~-~--~~~~~~~~~~~~~~~~vd---giIi~~~~~~~~~--~~l~~~~~~ 84 (272)
T cd06300 15 AQMLDEFKAQAKELKKAG--LISEFIVTSAD-G--DVAQQIADIRNLIAQGVD---AIIINPASPTALN--PVIEEACEA 84 (272)
T ss_pred HHHHHHHHHHHHhhhccC--CeeEEEEecCC-C--CHHHHHHHHHHHHHcCCC---EEEEeCCChhhhH--HHHHHHHHC
Confidence 33566666777777 7 54444444332 2 446667777788888888 8888775432 22 222223357
Q ss_pred CCcEEEeccc
Q 017815 123 GVSFIQIPTT 132 (365)
Q Consensus 123 g~p~i~IPTT 132 (365)
++|++.+-+.
T Consensus 85 ~iPvv~~~~~ 94 (272)
T cd06300 85 GIPVVSFDGT 94 (272)
T ss_pred CCeEEEEecC
Confidence 9999998654
No 217
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=50.29 E-value=2.3e+02 Score=28.04 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=74.2
Q ss_pred cEEEEehhhhCC---CCHHHHHhcHHHHH-HHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhh
Q 017815 163 QCVLVDTDTLNT---LPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKE 238 (365)
Q Consensus 163 ~~viiD~~l~~t---lP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~ 238 (365)
+.++.|++++.. ++++++.+-=-.+. ..++ ..+.+.+|++.+...+...+.++.--.+.+....+....|..+
T Consensus 158 K~~i~~~~l~Pd~aI~Dp~lt~~~P~~ltA~TGm---DALtHAiEAy~s~~a~p~tD~~A~~ai~li~~~L~~a~~~g~d 234 (377)
T COG1454 158 KYAIADPELLPDVAILDPELTLGMPPSLTAATGM---DALTHAIEAYVSPAANPITDALALEAIKLIFEYLPRAVADGDD 234 (377)
T ss_pred eeeccCcccCCCEEEEChHHhcCCChHhhhhhhH---HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 455555555443 45565554333322 2333 4566667766654444444554422222233333344443322
Q ss_pred hcccc---------cc---CcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 017815 239 SGLRA---------TL---NLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 306 (365)
Q Consensus 239 ~g~r~---------~l---~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~ 306 (365)
...|. .. +.+-.+.|+|.+. .+ -.|...-++.-.+.+-.=.+++ .+...+++.++-+.+|++.
T Consensus 235 ~eARe~m~~aa~lAGmAF~na~lG~~HalaH~--lG-~~~~~pHG~~nAillP~V~~fN--~~~a~~r~a~iA~~lg~~~ 309 (377)
T COG1454 235 LEAREKMHLAATLAGMAFANAGLGLVHALAHP--LG-ALFHIPHGLANAILLPYVIRFN--AEAAPERYARIARALGLPG 309 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHhhcc--cc-ccccCchHHHhhHhhHHHHHHh--hhhhHHHHHHHHHHhCCCC
Confidence 22331 12 2345577887765 33 3344444443333222222222 2456789999999999997
Q ss_pred CCCCCCCHHHHHHHHHh
Q 017815 307 APPDTMTVEMFKSIMAV 323 (365)
Q Consensus 307 ~~~~~i~~~~~~~~l~~ 323 (365)
.-. ..+.+++.+..
T Consensus 310 ~~~---~~~~~i~~i~~ 323 (377)
T COG1454 310 EGD---AADALIDALRE 323 (377)
T ss_pred ccc---hHHHHHHHHHH
Confidence 643 45566665554
No 218
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=50.04 E-value=1.5e+02 Score=28.15 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=46.4
Q ss_pred hhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHc----------
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIES---------- 93 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~---------- 93 (365)
+++.+. +.+|+.++++...+.. ..+.+.+.+++.| .++... .++ +...++...+..++..
T Consensus 117 ~~~~~~-g~k~vaii~~~~~~g~~~~~~f~~~~~~~G--~~vv~~~~~~-----~~~~d~~~~i~~i~~~~~~~~~~~~~ 188 (336)
T cd06339 117 EYARSQ-GKRRPLVLAPDGAYGQRVADAFRQAWQQLG--GTVVAIESYD-----PSPTDLSDAIRRLLGVDDSEQRIAQL 188 (336)
T ss_pred HHHHhc-CccceEEEecCChHHHHHHHHHHHHHHHcC--CceeeeEecC-----CCHHHHHHHHHHHhccccchhhhhhh
Confidence 344444 3689999988665543 6777888888888 554322 222 2445666677777665
Q ss_pred -----------CCCCcceEEEecCch
Q 017815 94 -----------RLDRRCTFVALGGGV 108 (365)
Q Consensus 94 -----------~~dr~~~IIaiGGGs 108 (365)
++| .|+.+|-+.
T Consensus 189 ~~~~~~~~~~~~~d---~v~~~~~~~ 211 (336)
T cd06339 189 KSLESEPRRRQDID---AIDAVALPD 211 (336)
T ss_pred hhcccCccccCCCC---cEEEEecCh
Confidence 666 887777665
No 219
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=49.87 E-value=1.1e+02 Score=26.68 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=51.5
Q ss_pred ccceeeecccchhhhhccCCceEEEEEccCc--hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVVTNNTV--APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~livtd~~~--~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
+.....+....+.+.+.+ .+++.++++... .....+-+.+.+++.| +++..... .... +.+..+.+.+.+.+
T Consensus 106 ~~~~~~~~~~~~~l~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~-~~~~~~~~~~~l~~ 179 (269)
T cd01391 106 PDNEQAGEAAAEYLAEKG-WKRVALIYGDDGAYGRERLEGFKAALKKAG--IEVVAIEY--GDLD-TEKGFQALLQLLKA 179 (269)
T ss_pred CCcHHHHHHHHHHHHHhC-CceEEEEecCCcchhhHHHHHHHHHHHhcC--cEEEeccc--cCCC-ccccHHHHHHHHhc
Confidence 333333444456666654 678888887662 2235566677777776 44322211 1111 11345555556655
Q ss_pred c-CCCCcceEEEecCchHhhHHHHHH
Q 017815 93 S-RLDRRCTFVALGGGVIGDMCGYAA 117 (365)
Q Consensus 93 ~-~~dr~~~IIaiGGGsv~D~ak~vA 117 (365)
. +++ .|+..+.....-+.+.+.
T Consensus 180 ~~~~~---~i~~~~~~~a~~~~~~~~ 202 (269)
T cd01391 180 APKPD---AIFACNDEMAAGALKAAR 202 (269)
T ss_pred CCCCC---EEEEcCchHHHHHHHHHH
Confidence 4 455 899988755555555443
No 220
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=49.60 E-value=78 Score=26.68 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=53.6
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|=+|..-.+ +.+.|.+.|++.| ++|.- +...++..-.+-..++.+.+.+..++|.=+|-+-|=|..|=.=|
T Consensus 2 kI~IgsDh~G~~-lK~~i~~~L~~~G--~eV~D--~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaANK- 75 (141)
T TIGR01118 2 AIIIGSDLAGKR-LKDVIKNFLVDNG--FEVID--VTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVATK- 75 (141)
T ss_pred EEEEEeCcchHH-HHHHHHHHHHHCC--CEEEE--cCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhc-
Confidence 567777877555 6899999999999 77643 32223333455677888888887788755555666555544333
Q ss_pred HHHHhhcCCcEEEe
Q 017815 116 AAASYLRGVSFIQI 129 (365)
Q Consensus 116 vA~~~~~g~p~i~I 129 (365)
..|++...+
T Consensus 76 -----~~GIRAA~~ 84 (141)
T TIGR01118 76 -----IKGMIAAEV 84 (141)
T ss_pred -----CCCeEEEEE
Confidence 356665555
No 221
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.52 E-value=1.9e+02 Score=26.04 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.+ ... .. +.+...+.++.+.+.++| .||..++.. +...+.......++
T Consensus 13 ~~~~~~~~i~~~a~~~g--~~~~~--~~~-~~--~~~~~~~~i~~l~~~~vd---gii~~~~~~--~~~~~~~~~~~~~i 80 (269)
T cd06281 13 LLAQLFSGAEDRLRAAG--YSLLI--ANS-LN--DPERELEILRSFEQRRMD---GIIIAPGDE--RDPELVDALASLDL 80 (269)
T ss_pred cHHHHHHHHHHHHHHcC--CEEEE--EeC-CC--ChHHHHHHHHHHHHcCCC---EEEEecCCC--CcHHHHHHHHhCCC
Confidence 44557778888888888 66532 222 22 445667777788888888 888887532 22222222234689
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-..
T Consensus 81 pvV~i~~~ 88 (269)
T cd06281 81 PIVLLDRD 88 (269)
T ss_pred CEEEEecc
Confidence 99999554
No 222
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=49.38 E-value=1.7e+02 Score=26.45 Aligned_cols=77 Identities=9% Similarity=0.038 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch-HhhHHHHHHHHhhcCC
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IGDMCGYAAASYLRGV 124 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs-v~D~ak~vA~~~~~g~ 124 (365)
+..+.+.+.+.+++.| +++.++..+ .+ .+.+.-.+.++.+.+.++| .||-.+..+ .+|- .+......++
T Consensus 14 ~~~~~~gi~~~~~~~g--~~~~~~~~~-~~--~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~~~~--~~~~~~~~~i 83 (275)
T cd06320 14 WRSLKEGYENEAKKLG--VSVDIQAAP-SE--GDQQGQLSIAENMINKGYK---GLLFSPISDVNLVP--AVERAKKKGI 83 (275)
T ss_pred HHHHHHHHHHHHHHhC--CeEEEEccC-CC--CCHHHHHHHHHHHHHhCCC---EEEECCCChHHhHH--HHHHHHHCCC
Confidence 4446677778888888 665433222 22 2445556777888888888 777554432 2222 1222235799
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-+.
T Consensus 84 PvV~~~~~ 91 (275)
T cd06320 84 PVVNVNDK 91 (275)
T ss_pred eEEEECCC
Confidence 99998655
No 223
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=49.36 E-value=1.7e+02 Score=28.70 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 017815 289 DSIVKRVHNILQQAKLPT 306 (365)
Q Consensus 289 ~~~~~~i~~ll~~lglp~ 306 (365)
+...+++.++.+.+|...
T Consensus 289 ~~~~~~~~~l~~~l~~~~ 306 (376)
T cd08193 289 PAAEERYAELADALGPDL 306 (376)
T ss_pred hhhHHHHHHHHHHhCCCc
Confidence 344567888888887753
No 224
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=49.15 E-value=1.6e+02 Score=26.36 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +++.++ .. . .+.+...+.++.+.+.++| .||-.+....-+..+.+ ...++|
T Consensus 14 ~~~~~~~~~~~~~~~g--~~~~~~--~~-~--~~~~~~~~~i~~l~~~~vd---giii~~~~~~~~~~~~l---~~~~ip 80 (268)
T cd06298 14 FAELARGIDDIATMYK--YNIILS--NS-D--NDKEKELKVLNNLLAKQVD---GIIFMGGKISEEHREEF---KRSPTP 80 (268)
T ss_pred HHHHHHHHHHHHHHcC--CeEEEE--eC-C--CCHHHHHHHHHHHHHhcCC---EEEEeCCCCcHHHHHHH---hcCCCC
Confidence 4446777778888888 665433 21 1 1345556666667777888 88888765444454433 246899
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
+|.+-+.
T Consensus 81 vV~~~~~ 87 (268)
T cd06298 81 VVLAGSV 87 (268)
T ss_pred EEEEccc
Confidence 9998654
No 225
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=48.92 E-value=60 Score=27.97 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=25.8
Q ss_pred ceEEEecCchHh------hHHHHHHHHhhcCCcEEEecccc
Q 017815 99 CTFVALGGGVIG------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 99 ~~IIaiGGGsv~------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
|.|+-.||.... ++.+++...+..+.++..|.+..
T Consensus 78 D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~ 118 (180)
T cd03169 78 DALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGP 118 (180)
T ss_pred CEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHH
Confidence 488888874322 35677777788899999999874
No 226
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.72 E-value=78 Score=29.64 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=42.7
Q ss_pred eEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHH
Q 017815 36 KVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMC 113 (365)
Q Consensus 36 ~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~a 113 (365)
++.++..+.-. ..+.+++.+.|++.| +++. .+ . ..+| ++|.+|| |+.+.++
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g--~~~~---~~-----------------~--~~~D---~vi~lGGDGT~L~a~ 56 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYG--FTVV---DH-----------------P--KNAN---IIVSIGGDGTFLQAV 56 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCC--CEEE---cC-----------------C--CCcc---EEEEECCcHHHHHHH
Confidence 56666654432 226788888898888 5532 11 0 2345 9999995 8888888
Q ss_pred HHHHHHhhcCCcEEEecc
Q 017815 114 GYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPT 131 (365)
+..+ ....+|++-|.+
T Consensus 57 ~~~~--~~~~~pilgIn~ 72 (264)
T PRK03501 57 RKTG--FREDCLYAGIST 72 (264)
T ss_pred HHhc--ccCCCeEEeEec
Confidence 7542 223678777766
No 227
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=48.61 E-value=49 Score=31.07 Aligned_cols=93 Identities=10% Similarity=0.150 Sum_probs=50.1
Q ss_pred chhhhhccC-CceEEEEEccCch--HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 25 NCLYYRHVQ-GKKVLVVTNNTVA--PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 25 ~~~l~~~~~-~~~~livtd~~~~--~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
-++++++.+ .+++.+++|++.. ....+.+.+..++.| +++..+.++ +.+++.+..+.+.+ +.| ++
T Consensus 121 l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g--~~l~~~~v~------~~~~~~~~~~~l~~-~~d---a~ 188 (294)
T PF04392_consen 121 LELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLG--IELVEIPVP------SSEDLEQALEALAE-KVD---AL 188 (294)
T ss_dssp HHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT---EEEEEEES------SGGGHHHHHHHHCT-T-S---EE
T ss_pred HHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcC--CEEEEEecC------cHhHHHHHHHHhhc-cCC---EE
Confidence 455566544 4788788887754 236777777778888 776544443 44566666666533 334 77
Q ss_pred EEecCchHhhHHHHHH-HHhhcCCcEEEe
Q 017815 102 VALGGGVIGDMCGYAA-ASYLRGVSFIQI 129 (365)
Q Consensus 102 IaiGGGsv~D~ak~vA-~~~~~g~p~i~I 129 (365)
+-...+.+.+-...+. .+...++|++..
T Consensus 189 ~~~~~~~~~~~~~~i~~~~~~~~iPv~~~ 217 (294)
T PF04392_consen 189 YLLPDNLVDSNFEAILQLANEAKIPVFGS 217 (294)
T ss_dssp EE-S-HHHHHTHHHHHHHCCCTT--EEES
T ss_pred EEECCcchHhHHHHHHHHHHhcCCCEEEC
Confidence 7766666655444332 223456777663
No 228
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=48.01 E-value=2.6e+02 Score=26.82 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEecc
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPT 131 (365)
++++++.+.+.+-+.+|+++|+|..+- +++++.. ....++++.|.-
T Consensus 173 EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~-~~~~~kVigv~~ 219 (329)
T PRK14045 173 EIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAI-LNAEWRVVGIAV 219 (329)
T ss_pred HHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHH-hCCCCeEEEEEe
Confidence 677776654334456889999887643 3333321 224466666644
No 229
>PLN02727 NAD kinase
Probab=47.95 E-value=53 Score=36.16 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=49.7
Q ss_pred CCceEEEEEccCchHH-HHHHHHHHHhhC-CCCceEEEEEeCCCCC----CCCHHHHHH----HHHHHHHcCCCCcceEE
Q 017815 33 QGKKVLVVTNNTVAPL-YLDKVTDALTRG-NPNVSVENVILPDGEN----YKNMDTLMK----VFDKAIESRLDRRCTFV 102 (365)
Q Consensus 33 ~~~~~livtd~~~~~~-~~~~v~~~L~~~-g~~i~v~~~~~~~~e~----~~~~~~v~~----~~~~~~~~~~dr~~~II 102 (365)
..++++||.-..-... ...++.+.|.+. | ++| ++-+.... .+.+..... -.+.+ ...+| +||
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~g--i~V--~VE~~~a~~l~~~~~~~~~~~~~~~~~~el-~~~~D---LVI 748 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEK--MNV--LVEPDVHDIFARIPGFGFVQTFYSQDTSDL-HERVD---FVA 748 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCC--eEE--EEecchHHHhhccccccccceecccchhhc-ccCCC---EEE
Confidence 4688999998764222 567788888876 7 554 22111100 000000000 00011 11344 999
Q ss_pred EecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 103 ALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 103 aiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.||| |+++-+++.. ...++|++.|.+.
T Consensus 749 vLGGDGTlLrAar~~---~~~~iPILGINlG 776 (986)
T PLN02727 749 CLGGDGVILHASNLF---RGAVPPVVSFNLG 776 (986)
T ss_pred EECCcHHHHHHHHHh---cCCCCCEEEEeCC
Confidence 9998 8888888765 2467888877654
No 230
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=47.63 E-value=1.4e+02 Score=25.69 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=35.4
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCC-ceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~-i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG 105 (365)
+-|+.||..+.-.+ .+.+--.+.|.+.|.. -++.++.+|+ .+|-=..+-..++...+| .||++|
T Consensus 10 ~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPG-----A~EiP~~a~~l~~~~~yD---aiIaLG 77 (158)
T PRK12419 10 PQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPG-----AFEIPLHAQTLAKTGRYA---AIVAAA 77 (158)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEEE
Confidence 46888988875333 3555556677777711 1244455564 333322222233334455 999998
No 231
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=47.35 E-value=2e+02 Score=25.39 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.+ ++. .. +.+...+.++.+...++| .||..+.... +....+......++
T Consensus 13 ~~~~~~~~~~~~a~~~g--~~~~~--~~~-~~--~~~~~~~~~~~l~~~~vd---gvi~~~~~~~-~~~~~~~~l~~~~i 81 (267)
T cd01536 13 FWQAMNKGAEAAAKELG--VELIV--LDA-QN--DVSKQIQQIEDLIAQGVD---GIIISPVDSA-ALTPALKKANAAGI 81 (267)
T ss_pred HHHHHHHHHHHHHHhcC--ceEEE--ECC-CC--CHHHHHHHHHHHHHcCCC---EEEEeCCCch-hHHHHHHHHHHCCC
Confidence 33446777777787777 66533 332 22 345555777777777888 8888765422 11112222335789
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-++
T Consensus 82 p~V~~~~~ 89 (267)
T cd01536 82 PVVTVDSD 89 (267)
T ss_pred cEEEecCC
Confidence 99998665
No 232
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=47.26 E-value=79 Score=31.77 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=26.2
Q ss_pred ceEEEecCchHhhHHHH-----HHHHhhcCCcEEEecccc
Q 017815 99 CTFVALGGGVIGDMCGY-----AAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~-----vA~~~~~g~p~i~IPTTl 133 (365)
|++|..|||.-.|..+. +..+...|.|++.++-++
T Consensus 119 DlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsi 158 (426)
T PRK10017 119 DAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSV 158 (426)
T ss_pred CEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcC
Confidence 39999999999996442 223456899999998774
No 233
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=47.19 E-value=2.3e+02 Score=27.12 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=52.8
Q ss_pred hhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
+++.+. .++|+.+|.....+.. ..+.+.+.+++.| +++....+. ...++..++...+..++..++| +|+..
T Consensus 125 ~~~~~~-~~~~v~~i~~d~~~g~~~~~~~~~~~~~~G--~~vv~~~~~--~~~~~~~d~s~~v~~l~~~~pd---~V~~~ 196 (360)
T cd06357 125 DYLLRH-YGKRVFLVGSNYIYPYESNRIMRDLLEQRG--GEVLGERYL--PLGASDEDFARIVEEIREAQPD---FIFST 196 (360)
T ss_pred HHHHhc-CCcEEEEECCCCcchHHHHHHHHHHHHHcC--CEEEEEEEe--cCCCchhhHHHHHHHHHHcCCC---EEEEe
Confidence 344443 2577888776655443 6677788888888 665322111 1223456778888889999988 77765
Q ss_pred cCchHhhHHHHHHHHhhcCC
Q 017815 105 GGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~ 124 (365)
+.+. |.+.++-.....|.
T Consensus 197 ~~~~--~~~~~~~~~~~~G~ 214 (360)
T cd06357 197 LVGQ--SSYAFYRAYAAAGF 214 (360)
T ss_pred CCCC--ChHHHHHHHHHcCC
Confidence 5443 55555533333343
No 234
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=47.10 E-value=2.2e+02 Score=26.90 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=47.9
Q ss_pred CceEEEEEccC--chHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 34 GKKVLVVTNNT--VAPLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~--~~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
.+++.+++++. ..+...+.+.+.+++.| +++... .++. +..++...+..+++.++| .|+-.+.+ -
T Consensus 136 ~~~v~~l~~~~~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~~-----~~~d~~~~v~~i~~~~~d---~vi~~~~~--~ 203 (344)
T cd06348 136 IKRVAVFYAQDDAFSVSETEIFQKALRDQG--LNLVTVQTFQT-----GDTDFQAQITAVLNSKPD---LIVISALA--A 203 (344)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHHHHcC--CEEEEEEeeCC-----CCCCHHHHHHHHHhcCCC---EEEECCcc--h
Confidence 47888887543 33347788888888888 665322 2332 234566777788888888 66655433 3
Q ss_pred hHHHHHHHHhhcCCc
Q 017815 111 DMCGYAAASYLRGVS 125 (365)
Q Consensus 111 D~ak~vA~~~~~g~p 125 (365)
|.+.++-.....|..
T Consensus 204 ~~~~~~~~~~~~g~~ 218 (344)
T cd06348 204 DGGNLVRQLRELGYN 218 (344)
T ss_pred hHHHHHHHHHHcCCC
Confidence 555555433344543
No 235
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=46.81 E-value=48 Score=28.67 Aligned_cols=85 Identities=9% Similarity=-0.058 Sum_probs=45.4
Q ss_pred chhhhh-ccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEEeC--------CCCCCCCHHHHHHHHHHHHH--
Q 017815 25 NCLYYR-HVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVILP--------DGENYKNMDTLMKVFDKAIE-- 92 (365)
Q Consensus 25 ~~~l~~-~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~~~--------~~e~~~~~~~v~~~~~~~~~-- 92 (365)
|+.+.+ +..++|++|+.+..+. ....+.+.+..+..+ +.|.. ... +...+| -.+.++...+.+
T Consensus 17 p~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklg--iPVvt-T~~~~~~~~~kgv~~~~--~~lg~~g~~~~~p~ 91 (162)
T TIGR00315 17 PKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFD--LPVVA-TADTYRALIEAGIESEE--MNLHEITQFLADPS 91 (162)
T ss_pred HHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHC--CCEEE-cCccccccccCCeecCC--CCHHHHHHhccCch
Confidence 344433 3347899999998875 336677777666655 54422 121 122222 334444444433
Q ss_pred -cCC---CCcceEEEecCchHhhHHHHH
Q 017815 93 -SRL---DRRCTFVALGGGVIGDMCGYA 116 (365)
Q Consensus 93 -~~~---dr~~~IIaiGGGsv~D~ak~v 116 (365)
.++ ...|+||.+|-- .+.+-.+
T Consensus 92 ~e~~~g~g~~DlvlfvG~~--~y~~~~~ 117 (162)
T TIGR00315 92 WEGFDGEGNYDLVLFLGII--YYYLSQM 117 (162)
T ss_pred hhhccCCCCcCEEEEeCCc--chHHHHH
Confidence 222 234599999843 3555433
No 236
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=46.19 E-value=1.4e+02 Score=28.43 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=51.7
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC---CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN---YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~---~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.-.+++|++...+.+...+...+-..+ .++. ....+..+ ..+.....++.+.+++.++| +|+..|... .-
T Consensus 29 ~~~~~~tg~h~~~~~~~~~~~~~~~~~--~~~~-l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD---vV~~~g~~~-~~ 101 (363)
T cd03786 29 ELVLVVTGQHYDMEMGVTFFEILFIIK--PDYD-LLLGSDSQSLGAQTAGLLIGLEAVLLEEKPD---LVLVLGDTN-ET 101 (363)
T ss_pred CEEEEEeCCCCChhhhHHHHHhhCCCC--CCEE-EecCCCCCCHHHHHHHHHHHHHHHHHHhCCC---EEEEeCCch-HH
Confidence 346688888877666666665542222 2322 12222111 22445567777788888888 999997542 23
Q ss_pred HHHHHHHHhhcCCcEEEecc
Q 017815 112 MCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPT 131 (365)
++...++ ...++|++.+.-
T Consensus 102 ~~~~~aa-~~~~iPvv~~~~ 120 (363)
T cd03786 102 LAAALAA-FKLGIPVAHVEA 120 (363)
T ss_pred HHHHHHH-HHcCCCEEEEec
Confidence 4333433 456999987654
No 237
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=46.16 E-value=83 Score=28.20 Aligned_cols=77 Identities=10% Similarity=0.154 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+-+.+.+++.| +++.++ .+ . ..+.+.-.+.++.+...++| .||-.... .-.+...+.-+...|+|
T Consensus 13 ~~~~~~g~~~~a~~~g--~~~~~~-~~-~--~~d~~~q~~~i~~~i~~~~d---~Iiv~~~~-~~~~~~~l~~~~~~gIp 82 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELG--YEVEIV-FD-A--QNDPEEQIEQIEQAISQGVD---GIIVSPVD-PDSLAPFLEKAKAAGIP 82 (257)
T ss_dssp HHHHHHHHHHHHHHHT--CEEEEE-EE-S--TTTHHHHHHHHHHHHHTTES---EEEEESSS-TTTTHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcC--CEEEEe-CC-C--CCCHHHHHHHHHHHHHhcCC---EEEecCCC-HHHHHHHHHHHhhcCce
Confidence 4446677777888877 665432 22 2 23667888888888899988 77744332 22233334334457999
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
++.+=+.
T Consensus 83 vv~~d~~ 89 (257)
T PF13407_consen 83 VVTVDSD 89 (257)
T ss_dssp EEEESST
T ss_pred EEEEecc
Confidence 9997444
No 238
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=46.08 E-value=2e+02 Score=26.92 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 49 YLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+++.+.+.+.| ++-. ++. ..||. .=|.++-.++++.+.+.-.+|-.+++++|+.++-|+...+-.+...|..-
T Consensus 23 ~l~~~i~~l~~~G--v~gi-~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~ 99 (292)
T PRK03170 23 ALRKLVDYLIANG--TDGL-VVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADG 99 (292)
T ss_pred HHHHHHHHHHHcC--CCEE-EECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCE
Confidence 4555666666677 5532 222 23553 56778888888888776445556999999999988888776666678776
Q ss_pred EEe
Q 017815 127 IQI 129 (365)
Q Consensus 127 i~I 129 (365)
+.+
T Consensus 100 v~~ 102 (292)
T PRK03170 100 ALV 102 (292)
T ss_pred EEE
Confidence 665
No 239
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=46.05 E-value=1.9e+02 Score=25.71 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcC
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g 123 (365)
..+..+.+.+.+.+++.| +++.++..++ ..+..+.+.+.+.+.++| .||..+.....+. +......+
T Consensus 16 ~~~~~~~~~i~~~~~~~g--~~~~~~~~~~-----~~~~~~~~~~~~~~~~vd---giii~~~~~~~~~---~~~~~~~~ 82 (268)
T cd06271 16 PFFAEFLSGLSEALAEHG--YDLVLLPVDP-----DEDPLEVYRRLVESGLVD---GVIISRTRPDDPR---VALLLERG 82 (268)
T ss_pred ccHHHHHHHHHHHHHHCC--ceEEEecCCC-----cHHHHHHHHHHHHcCCCC---EEEEecCCCCChH---HHHHHhcC
Confidence 345557788888888888 6654432221 123334444444555677 8887765432221 22223578
Q ss_pred CcEEEecc
Q 017815 124 VSFIQIPT 131 (365)
Q Consensus 124 ~p~i~IPT 131 (365)
+|+|.+-.
T Consensus 83 ipvV~~~~ 90 (268)
T cd06271 83 FPFVTHGR 90 (268)
T ss_pred CCEEEECC
Confidence 99999844
No 240
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=45.93 E-value=2.1e+02 Score=25.11 Aligned_cols=76 Identities=8% Similarity=0.155 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +++. .++... +.+...+.++.+...++| .||..+.-. -+.. .+......++|
T Consensus 14 ~~~~~~g~~~~~~~~g--~~l~--~~~~~~---~~~~~~~~~~~~~~~~~d---~ii~~~~~~-~~~~-~~~~l~~~~ip 81 (264)
T cd01537 14 FAQVLKGIEEAAKAAG--YQVL--LANSQN---DAEKQLSALENLIARGVD---GIIIAPSDL-TAPT-IVKLARKAGIP 81 (264)
T ss_pred HHHHHHHHHHHHHHcC--CeEE--EEeCCC---CHHHHHHHHHHHHHcCCC---EEEEecCCC-cchh-HHHHhhhcCCC
Confidence 4446777777888887 6643 333322 346777777777777888 888866432 2332 23334467999
Q ss_pred EEEecccc
Q 017815 126 FIQIPTTV 133 (365)
Q Consensus 126 ~i~IPTTl 133 (365)
++.+..+.
T Consensus 82 ~v~~~~~~ 89 (264)
T cd01537 82 VVLVDRDI 89 (264)
T ss_pred EEEeccCC
Confidence 99997773
No 241
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=45.66 E-value=2.2e+02 Score=27.80 Aligned_cols=86 Identities=10% Similarity=0.104 Sum_probs=52.1
Q ss_pred hhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
+++.+.. ++|+.++++...+.. ..+.+.+.+++.| +++.. ..++. .-..+...+.+++..++| +|+.
T Consensus 126 ~~~~~~~-g~~va~l~~d~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~-----g~~Df~~~l~~i~~~~pD---~V~~ 194 (374)
T TIGR03669 126 PYMVEEY-GKKIYTIAADYNFGQLSADWVRVIAKENG--AEVVGEEFIPL-----SVSQFSSTIQNIQKADPD---FVMS 194 (374)
T ss_pred HHHHHcC-CCeEEEEcCCcHHHHHHHHHHHHHHHHcC--CeEEeEEecCC-----CcchHHHHHHHHHHcCCC---EEEE
Confidence 4444432 578888888776654 5666777888888 66532 12222 335677778888888888 8887
Q ss_pred ecCchHhhHHHHHHHHhhcCC
Q 017815 104 LGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+-|. |.+.++-.....|+
T Consensus 195 ~~~g~--~~~~~~kq~~~~G~ 213 (374)
T TIGR03669 195 MLVGA--NHASFYEQAASANL 213 (374)
T ss_pred cCcCC--cHHHHHHHHHHcCC
Confidence 65332 33444433333444
No 242
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=45.63 E-value=1.1e+02 Score=25.43 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec--CchHhhHHHHHHH
Q 017815 64 VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--GGVIGDMCGYAAA 118 (365)
Q Consensus 64 i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG--GGsv~D~ak~vA~ 118 (365)
+++..+.+|+.. ++.. ..-..+.+.||| .|+++| |..-.|--.+.++
T Consensus 31 ~~i~R~TVPGIK---dlpv--aakrLieeeGCd---~Vi~lG~~G~t~~Dk~~~~~a 79 (154)
T COG1731 31 IKIKRYTVPGIK---DLPV--AAKRLIEEEGCD---IVIALGWVGPTEKDKYSYLAA 79 (154)
T ss_pred CceEEeeCCCcc---cChH--HHHHHHHhcCCc---EEEEccCcCcchhhHHHHHHH
Confidence 666667776532 3322 222344559999 999999 7777776655543
No 243
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=45.29 E-value=1.3e+02 Score=28.35 Aligned_cols=87 Identities=15% Similarity=0.045 Sum_probs=49.2
Q ss_pred ecccchhhhhccCCceEEEEEccCc--hHHHHHHHHHHHhh-CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTV--APLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDR 97 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~--~~~~~~~v~~~L~~-~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr 97 (365)
.....+++++..+.+++.++++... .+.+.+.+.+.+++ .| .++.. .++-.. ++. +....+.+++..++|
T Consensus 121 ~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~~~~~~g--~~v~~-~~~~~~--~~~-~~~~~v~~i~~~~~d- 193 (332)
T cd06344 121 ARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGG--GIVVT-PCDLSS--PDF-NANTAVSQAINNGAT- 193 (332)
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHHHHHhcC--Ceeee-eccCCC--CCC-CHHHHHHHHHhcCCC-
Confidence 3334566665533588888877643 34467778888887 46 44321 111111 122 344455566667777
Q ss_pred cceEEEecCchHhhHHHHHHH
Q 017815 98 RCTFVALGGGVIGDMCGYAAA 118 (365)
Q Consensus 98 ~~~IIaiGGGsv~D~ak~vA~ 118 (365)
+|+..+.|. ++..++..
T Consensus 194 --~v~~~~~~~--~~~~~~~~ 210 (332)
T cd06344 194 --VLVLFPDTD--TLDKALEV 210 (332)
T ss_pred --EEEEeCChh--HHHHHHHH
Confidence 888777664 55655543
No 244
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=45.19 E-value=2.2e+02 Score=27.96 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=29.1
Q ss_pred hhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 017815 249 HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 306 (365)
Q Consensus 249 H~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~ 306 (365)
..++|+|++. . .-.++...+.+..+.+--..++. .+...+++.++.+.+|.+.
T Consensus 256 ~g~~Hal~~~--l-~~~~~i~HG~~~ai~lp~vl~~~--~~~~~~~~~~la~~~g~~~ 308 (377)
T cd08188 256 LGAVHAMAHS--L-GGLLDLPHGECNAILLPHVMEFN--YPAAPERYARIAEALGLDV 308 (377)
T ss_pred HHHHHHHhhh--h-hhCcCCChHHHHHHHHHHHHHhh--hhcCHHHHHHHHHHhCCCC
Confidence 4567777664 2 23455555555444433333332 2334567777778888754
No 245
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=44.99 E-value=2.1e+02 Score=25.58 Aligned_cols=75 Identities=8% Similarity=0.076 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.+. . ... +.+...+..+.+...++| .||..+.-.--+. +......++
T Consensus 13 ~~~~~~~~~~~~~~~~g--~~~~~~--~-~~~--~~~~~~~~i~~l~~~~vd---giii~~~~~~~~~---~~~~~~~~i 79 (264)
T cd06274 13 SFARIAKRLEALARERG--YQLLIA--C-SDD--DPETERETVETLIARQVD---ALIVAGSLPPDDP---YYLCQKAGL 79 (264)
T ss_pred hHHHHHHHHHHHHHHCC--CEEEEE--e-CCC--CHHHHHHHHHHHHHcCCC---EEEEcCCCCchHH---HHHHHhcCC
Confidence 34456777778888888 665433 2 111 345666788888888998 8888775332222 222335789
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+=..
T Consensus 80 pvV~~~~~ 87 (264)
T cd06274 80 PVVALDRP 87 (264)
T ss_pred CEEEecCc
Confidence 99999554
No 246
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=44.64 E-value=82 Score=26.50 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=24.0
Q ss_pred ceEEEecCchHh------hHHHHHHHHhhcCCcEEEecccc
Q 017815 99 CTFVALGGGVIG------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 99 ~~IIaiGGGsv~------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
|.|+-.||...- .+..++...+.++.++..|.+..
T Consensus 62 D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~ 102 (166)
T TIGR01382 62 DALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP 102 (166)
T ss_pred cEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 488888874322 25555555567889999998874
No 247
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=44.42 E-value=69 Score=27.12 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=49.2
Q ss_pred EEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHH
Q 017815 39 VVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAA 118 (365)
Q Consensus 39 ivtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~ 118 (365)
|=+|..-++ +.+.|.+.|++.| ++|.-+--...++..-.+...++.+.+.+..+||.=+|-+=|=|..|=+=
T Consensus 3 igsDhaG~~-lK~~l~~~L~~~g--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN----- 74 (144)
T TIGR00689 3 IGSDHAGLE-LKSEIIEHLKQKG--HEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAAN----- 74 (144)
T ss_pred EeeCcchHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHh-----
Confidence 445555444 6889999999998 77654432233444444556777777777777753333333333333222
Q ss_pred HhhcCCcEEEeccc
Q 017815 119 SYLRGVSFIQIPTT 132 (365)
Q Consensus 119 ~~~~g~p~i~IPTT 132 (365)
-..|++...+-..
T Consensus 75 -K~~GIraa~~~d~ 87 (144)
T TIGR00689 75 -KFKGIRAALCVDE 87 (144)
T ss_pred -cCCCeEEEEECCH
Confidence 2357777666444
No 248
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=44.07 E-value=89 Score=29.42 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCcceEE-EecCc--------hHhhHHHHHHHHh---hcCCcEEEecccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFV-ALGGG--------VIGDMCGYAAASY---LRGVSFIQIPTTV 133 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~II-aiGGG--------sv~D~ak~vA~~~---~~g~p~i~IPTTl 133 (365)
+.+-++++.+.+.++. +|+ .--|| |.+.+||.-|+.- ..++|||.|.|-.
T Consensus 144 eki~ra~E~A~e~k~P---~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~P 205 (294)
T COG0777 144 EKITRAIERAIEDKLP---LVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDP 205 (294)
T ss_pred HHHHHHHHHHHHhCCC---EEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC
Confidence 4567778888887776 443 44444 5677888766543 3589999996553
No 249
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=44.05 E-value=2.6e+02 Score=25.71 Aligned_cols=87 Identities=7% Similarity=-0.018 Sum_probs=49.1
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+.+.++.+.. .+....+.+.+.+++.| +++.+ +... . +.+.-.+..+.+...++| .||-. +...-+
T Consensus 27 ~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G--~~~~~--~~~~-~--d~~~~~~~~~~l~~~~~d---giii~-~~~~~~ 95 (295)
T PRK10653 27 DTIALVVSTLNNPFFVSLKDGAQKEADKLG--YNLVV--LDSQ-N--NPAKELANVQDLTVRGTK---ILLIN-PTDSDA 95 (295)
T ss_pred CeEEEEecCCCChHHHHHHHHHHHHHHHcC--CeEEE--ecCC-C--CHHHHHHHHHHHHHcCCC---EEEEc-CCChHH
Confidence 4455555321 23346677777888888 66533 3321 1 335556777777888888 77754 333222
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
....+......++|+|.+-..
T Consensus 96 ~~~~l~~~~~~~ipvV~~~~~ 116 (295)
T PRK10653 96 VGNAVKMANQANIPVITLDRG 116 (295)
T ss_pred HHHHHHHHHHCCCCEEEEccC
Confidence 222233333578999999643
No 250
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=43.72 E-value=2.6e+02 Score=26.34 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEe
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~I 129 (365)
..++++++... .+-+.+|+++|+|..+= +++++.. +...++++.|
T Consensus 157 ~~EI~~q~~~~-~~~D~vv~~vGtGgt~~Gi~~~lk~-~~~~~~vigV 202 (311)
T TIGR01275 157 VLEIATQLESE-VKFDSIVVAAGSGGTIAGLSLGLSI-LNEDIRPVGV 202 (311)
T ss_pred HHHHHHHHhcC-CCCCEEEEeCCcHHHHHHHHHHHHH-hCCCCcEEEE
Confidence 35566665421 12346899999888653 4444422 2334555444
No 251
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=43.60 E-value=2.1e+02 Score=25.58 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +.+. .+. .+. +.+.-.+.++.+...++| .||-+|....-+..+. ....++
T Consensus 13 ~~~~~~~~i~~~~~~~g--~~~~--~~~-~~~--~~~~~~~~~~~l~~~~vd---giii~~~~~~~~~~~~---l~~~~i 79 (268)
T cd06273 13 IFARVIQAFQETLAAHG--YTLL--VAS-SGY--DLDREYAQARKLLERGVD---GLALIGLDHSPALLDL---LARRGV 79 (268)
T ss_pred hHHHHHHHHHHHHHHCC--CEEE--Eec-CCC--CHHHHHHHHHHHHhcCCC---EEEEeCCCCCHHHHHH---HHhCCC
Confidence 34557778888888888 6543 233 222 334455666667777888 8888876544444432 235789
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|++.+=+.
T Consensus 80 Pvv~~~~~ 87 (268)
T cd06273 80 PYVATWNY 87 (268)
T ss_pred CEEEEcCC
Confidence 99998544
No 252
>PRK11018 hypothetical protein; Provisional
Probab=43.56 E-value=69 Score=23.81 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=40.4
Q ss_pred CCccceecccccccccceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceE
Q 017815 1 MTPKALLYKDRFFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSV 66 (365)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v 66 (365)
|.|.+.+--.|..+|-+++-... .++++..|..+.|++|.... .+.|...+++.| .++
T Consensus 5 ~~~~~~lD~rG~~CP~Pvl~~kk---~l~~l~~G~~L~V~~d~~~a---~~di~~~~~~~G--~~v 62 (78)
T PRK11018 5 IVPDYRLDMVGEPCPYPAVATLE---ALPQLKKGEILEVVSDCPQS---INNIPLDARNHG--YTV 62 (78)
T ss_pred CCCCeeEECCCCcCCHHHHHHHH---HHHhCCCCCEEEEEeCCccH---HHHHHHHHHHcC--CEE
Confidence 45667788888899988885443 55666557777778876653 456667777888 665
No 253
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=43.56 E-value=2.4e+02 Score=26.08 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 49 YLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
-.++..+.+.+.| ++-. ++. ..|| ..=|.++-.++++.+.+...+|--+|+++|+.++-|+...+..+...|..-
T Consensus 19 ~~~~~i~~l~~~G--v~gi-~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~ 95 (281)
T cd00408 19 ALRRLVEFLIEAG--VDGL-VVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADG 95 (281)
T ss_pred HHHHHHHHHHHcC--CCEE-EECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCE
Confidence 4555556666667 5432 222 2355 345677788888888776545556999999999988888776666678776
Q ss_pred EEe
Q 017815 127 IQI 129 (365)
Q Consensus 127 i~I 129 (365)
+.+
T Consensus 96 v~v 98 (281)
T cd00408 96 VLV 98 (281)
T ss_pred EEE
Confidence 665
No 254
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=43.25 E-value=2.5e+02 Score=27.46 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=50.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCC------C-CCCCCH-------------------HHHHHHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPD------G-ENYKNM-------------------DTLMKVFD 88 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~------~-e~~~~~-------------------~~v~~~~~ 88 (365)
.|++|+++++....+...+.+.|++.+ .++.++-..+ + +..=++ ..+.++.+
T Consensus 6 ~ki~i~aGgtsGhi~paal~~~l~~~~--~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~~ 83 (385)
T TIGR00215 6 PTIALVAGEASGDILGAGLRQQLKEHY--PNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQ 83 (385)
T ss_pred CeEEEEeCCccHHHHHHHHHHHHHhcC--CCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 468888888777776557777777665 3443332221 1 000011 12334446
Q ss_pred HHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 89 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 89 ~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
.++++++| +||++|| ....+.-..+ +...|+|++..
T Consensus 84 ~l~~~kPd---~vi~~g~-~~~~~~~a~a-a~~~gip~v~~ 119 (385)
T TIGR00215 84 LAKQAKPD---LLVGIDA-PDFNLTKELK-KKDPGIKIIYY 119 (385)
T ss_pred HHHhcCCC---EEEEeCC-CCccHHHHHH-HhhCCCCEEEE
Confidence 67788888 9999995 5555322122 23468888764
No 255
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.74 E-value=2.3e+02 Score=25.38 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh--HHHHHHHHhhc
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD--MCGYAAASYLR 122 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D--~ak~vA~~~~~ 122 (365)
.+..+.+.+.+.+++.| +++.. +.. . .+.+.-.+.++.+...++| .||-++...... ....+......
T Consensus 13 ~~~~~~~gi~~~~~~~g--~~~~~--~~~-~--~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~~~~~~~~i~~~~~~ 82 (273)
T cd06292 13 IFPAFAEAIEAALAQYG--YTVLL--CNT-Y--RGGVSEADYVEDLLARGVR---GVVFISSLHADTHADHSHYERLAER 82 (273)
T ss_pred hHHHHHHHHHHHHHHCC--CEEEE--EeC-C--CChHHHHHHHHHHHHcCCC---EEEEeCCCCCcccchhHHHHHHHhC
Confidence 34457788888898888 66532 221 1 1335566778888888888 888887432111 12223333467
Q ss_pred CCcEEEeccc
Q 017815 123 GVSFIQIPTT 132 (365)
Q Consensus 123 g~p~i~IPTT 132 (365)
|+|+|.+=+.
T Consensus 83 ~ipvV~i~~~ 92 (273)
T cd06292 83 GLPVVLVNGR 92 (273)
T ss_pred CCCEEEEcCC
Confidence 9999999665
No 256
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=42.66 E-value=2.6e+02 Score=27.35 Aligned_cols=53 Identities=6% Similarity=0.055 Sum_probs=31.6
Q ss_pred chhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 017815 248 GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLP 305 (365)
Q Consensus 248 gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp 305 (365)
|..++|+|++. . .-.|+..-+.+..+.+----++. .+...+++.++.+.+|..
T Consensus 258 g~g~~Hal~~~--l-~~~~~i~HG~a~ai~lp~vl~~~--~~~~~~~~~~la~~~g~~ 310 (379)
T TIGR02638 258 GLGLVHGMAHP--L-GAFYNTPHGVANAILLPHVMEFN--AEFTGEKYREIAKAMGVK 310 (379)
T ss_pred hHHHHHHhhhh--h-hcCcCCChHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHhCCC
Confidence 46778888875 3 34566776665555433222222 234556777777888875
No 257
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=42.31 E-value=61 Score=24.07 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 75 ENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 75 e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
+.+.-.+.++++.+.+++.|++ .|||+
T Consensus 23 ~~~d~d~Al~eM~e~A~~lGAn---AVVGv 49 (74)
T TIGR03884 23 ESDNVDEIVENLREKVKAKGGM---GLIAF 49 (74)
T ss_pred ecCCHHHHHHHHHHHHHHcCCC---EEEEE
Confidence 3334567799999999999999 99988
No 258
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=42.18 E-value=3e+02 Score=25.97 Aligned_cols=100 Identities=16% Similarity=0.080 Sum_probs=63.1
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
.+.+..+...+++.+++-.+....-.+.+.+.|++..++.+ ..+.+.-++.|.+.=+++.+.+++ +| ++|-|
T Consensus 144 ~~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~---~~~~nTIC~AT~~RQ~a~~~la~~--vD---~miVV 215 (280)
T TIGR00216 144 LEDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKE---VPVFNTICYATQNRQDAVKELAPE--VD---LMIVI 215 (280)
T ss_pred HHHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcC---CCCCCCcccccHHHHHHHHHHHhh--CC---EEEEE
Confidence 34455553345666665444433356677777765431112 123455666777766666665543 56 99999
Q ss_pred cCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 105 GGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
||=..-.+.|.+-.+-..+.|-..|=|.
T Consensus 216 Gg~nSsNT~rL~ei~~~~~~~t~~Ie~~ 243 (280)
T TIGR00216 216 GGKNSSNTTRLYEIAEEHGPPSYLIETA 243 (280)
T ss_pred CCCCCchHHHHHHHHHHhCCCEEEECCh
Confidence 9999999999886655567788888666
No 259
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=42.17 E-value=1.6e+02 Score=27.00 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=41.5
Q ss_pred HHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 50 LDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 50 ~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
.+-+.+.-++.| +++.. ++. .++.+..++.++.+.+.++| +||+.|.. ..|...-+|..+ ....|+.+
T Consensus 20 ~~G~~~~~~~~g--v~~~~--~e~---~~~~~~~~~~i~~~~~~g~d---lIi~~g~~-~~~~~~~vA~~~-p~~~F~~~ 87 (258)
T cd06353 20 DEGRKAAEKALG--VEVTY--VEN---VPEGADAERVLRELAAQGYD---LIFGTSFG-FMDAALKVAKEY-PDVKFEHC 87 (258)
T ss_pred HHHHHHHHHhcC--CeEEE--Eec---CCchHhHHHHHHHHHHcCCC---EEEECchh-hhHHHHHHHHHC-CCCEEEEC
Confidence 344444444455 65443 222 22567888888888888998 88886554 445544455444 46667766
Q ss_pred c
Q 017815 130 P 130 (365)
Q Consensus 130 P 130 (365)
=
T Consensus 88 d 88 (258)
T cd06353 88 S 88 (258)
T ss_pred C
Confidence 3
No 260
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=42.02 E-value=85 Score=25.67 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch--HhhHHHHH
Q 017815 46 APLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV--IGDMCGYA 116 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs--v~D~ak~v 116 (365)
.+.-...+.+.|++.| +++... +++ -+.+.+.+.++.+.+ ++| +||..||-+ .-|.++-+
T Consensus 16 ~d~~~~~l~~~l~~~G--~~~~~~~~v~-----Dd~~~I~~~l~~~~~-~~d---liittGG~g~g~~D~t~~~ 78 (135)
T smart00852 16 YDSNGPALAELLTELG--IEVTRYVIVP-----DDKEAIKEALREALE-RAD---LVITTGGTGPGPDDVTPEA 78 (135)
T ss_pred ccCcHHHHHHHHHHCC--CeEEEEEEeC-----CCHHHHHHHHHHHHh-CCC---EEEEcCCCCCCCCcCcHHH
Confidence 3444566777788888 665433 222 255667777766654 355 999999855 55776654
No 261
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=42.00 E-value=2.5e+02 Score=26.63 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=60.1
Q ss_pred ccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 42 NNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 42 d~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
|..+.....+++.+.+.+.| ++-. +.. ..|| +.=|.++-.++++.+.+.--.|--+|+++|+-++-+....+..+
T Consensus 19 dg~vD~~a~~~lv~~li~~G--v~gi-~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a 95 (299)
T COG0329 19 DGSVDEEALRRLVEFLIAAG--VDGL-VVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHA 95 (299)
T ss_pred CCCcCHHHHHHHHHHHHHcC--CCEE-EECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHH
Confidence 44455556777777787888 5532 222 2355 35677788888888887665555599999999988888777666
Q ss_pred hhcCCcEEEeccc
Q 017815 120 YLRGVSFIQIPTT 132 (365)
Q Consensus 120 ~~~g~p~i~IPTT 132 (365)
-..|..=+.+.|-
T Consensus 96 ~~~Gad~il~v~P 108 (299)
T COG0329 96 EKLGADGILVVPP 108 (299)
T ss_pred HhcCCCEEEEeCC
Confidence 6677776665544
No 262
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=41.90 E-value=1.1e+02 Score=29.75 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=61.8
Q ss_pred ecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
.....++++.+. -+++.+++|........+.+.+.+++.| +++...........+...++...+..++..+.+ .
T Consensus 106 ~~ai~d~i~~~~-wk~vailYdsd~gl~~lq~l~~~~~~~g--~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~---~ 179 (370)
T cd06389 106 KGALLSLIEYYQ-WDKFAYLYDSDRGLSTLQAVLDSAAEKK--WQVTAINVGNINNDRKDEAYRSLFQDLENKKER---R 179 (370)
T ss_pred hhHHHHHHHhcC-CcEEEEEecCchHHHHHHHHHHhhccCC--ceEEEEEeecCCCccchHHHHHHHHHhccccce---E
Confidence 333456666664 6999999996533336788888888877 555433222222223345778888888777766 6
Q ss_pred EEEecCchHhhHHHHHHHHhhcC---CcEEEecccc
Q 017815 101 FVALGGGVIGDMCGYAAASYLRG---VSFIQIPTTV 133 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g---~p~i~IPTTl 133 (365)
||-- ++.-++..++-.+...| ..+.-|-|++
T Consensus 180 Iil~--~~~~~~~~il~qa~~~gm~~~~y~~il~~~ 213 (370)
T cd06389 180 VILD--CERDKVNDIVDQVITIGKHVKGYHYIIANL 213 (370)
T ss_pred EEEE--CCHHHHHHHHHHHHHhCccccceEEEEccC
Confidence 6654 45666666554433333 3344355663
No 263
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=41.88 E-value=1e+02 Score=27.33 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCCC-ceEEEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEEecCchHh
Q 017815 47 PLYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~-i~v~~~~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIaiGGGsv~ 110 (365)
+.-...+.+.|++.|.+ +.+...++++ +.+.+.+.+..+.+ .++| +||--||=++.
T Consensus 22 D~ng~~L~~~L~~~G~~g~~v~~~iVpD-----d~~~I~~aL~~a~~~~~~D---lIITTGGtg~g 79 (193)
T PRK09417 22 DKGIPALEEWLASALTSPFEIETRLIPD-----EQDLIEQTLIELVDEMGCD---LVLTTGGTGPA 79 (193)
T ss_pred echHHHHHHHHHHcCCCCceEEEEECCC-----CHHHHHHHHHHHhhcCCCC---EEEECCCCCCC
Confidence 34566777778777511 2232223343 45566666666554 4566 88888776543
No 264
>KOG3198 consensus Signal recognition particle, subunit Srp19 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.42 E-value=69 Score=27.10 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHH
Q 017815 290 SIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDD 357 (365)
Q Consensus 290 ~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~ 357 (365)
....+|.+.++.+|++..++-. --+.|+ .+.|++++.|.++ .|+........++.+..
T Consensus 44 P~a~eI~Dvl~~lgl~~~~E~~K~hPrD~---------~n~GRVRvqlk~e-dG~l~~~~~~sr~~~~~ 102 (152)
T KOG3198|consen 44 PLAKEIADVLRALGLNCLLEPNKKHPRDF---------VNPGRVRVQLKNE-DGTLYVIAFISRKSLML 102 (152)
T ss_pred cchhHHHHHHHHhCCcccccccccCchhc---------CCCceEEEEeecc-CCcEEeecchhHHHHHH
Confidence 3567899999999999988633 333444 3478999999998 89976664555555443
No 265
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=41.31 E-value=2.5e+02 Score=27.64 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=62.1
Q ss_pred ccceeeecccchhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCC-H-HHHHHHHHHH
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKN-M-DTLMKVFDKA 90 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~-~-~~v~~~~~~~ 90 (365)
|++..-+.-..++++.++ -+++.+|.+..-+ +...+.+.+.+++.| +.+... .++.+....+ . .....+...+
T Consensus 154 p~D~~qa~ai~~li~~~~-w~~Vaii~~~d~yG~~~~~~f~~~~~~~G--icIa~~e~~~~~~~~~~~~~~~~~~~~~~i 230 (403)
T cd06361 154 PSDFYQTKAMAHLIKKSG-WNWVGIIITDDDYGRSALETFIIQAEANG--VCIAFKEILPASLSDNTKLNRIIRTTEKII 230 (403)
T ss_pred CchHhHHHHHHHHHHHcC-CcEEEEEEecCchHHHHHHHHHHHHHHCC--eEEEEEEEecCccCcchhHHHHHHHHHHHH
Confidence 333333333456666664 4777777765544 447888889999888 655322 2333222111 1 2333444445
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++.+++ +||..|. .-|+..++-.+...|+..+-|-|.
T Consensus 231 k~~~a~---vVvv~~~--~~~~~~l~~~a~~~g~~~~wigs~ 267 (403)
T cd06361 231 EENKVN---VIVVFAR--QFHVFLLFNKAIERNINKVWIASD 267 (403)
T ss_pred hcCCCe---EEEEEeC--hHHHHHHHHHHHHhCCCeEEEEEC
Confidence 667777 8887654 456666665556667655555433
No 266
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=41.24 E-value=81 Score=29.27 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=23.3
Q ss_pred cceEEEecCchHhhHH-HHHHHHhhcC---CcEEEecccc
Q 017815 98 RCTFVALGGGVIGDMC-GYAAASYLRG---VSFIQIPTTV 133 (365)
Q Consensus 98 ~~~IIaiGGGsv~D~a-k~vA~~~~~g---~p~i~IPTTl 133 (365)
+-.||+||.|++.+-+ -++. -+... -.++.|||..
T Consensus 42 ~g~ViGiGsGstv~~~v~~i~-q~l~~~~l~~vvgVPts~ 80 (261)
T KOG3075|consen 42 NGMVIGIGSGSTVVYAVDRIG-QLLFDGDLGNVVGVPTSF 80 (261)
T ss_pred CCeEEEecCccHHHHHHHHHH-HHhcCCCcCceEecccch
Confidence 4589999999976544 2222 22322 3599999995
No 267
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=41.10 E-value=2.7e+02 Score=25.09 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+...+.+.+++.| +++. .+. .+.+++.+.-.+.++.+...++| .||-.+.... ... .+......|+|
T Consensus 14 ~~~~~~gi~~~a~~~g--~~~~--~~~-~~~~~~~~~~~~~i~~~~~~~vd---giI~~~~~~~-~~~-~~~~~~~~giP 83 (268)
T cd06306 14 WLSVNYGMVEEAKRLG--VSLK--LLE-AGGYPNLAKQIAQLEDCAAWGAD---AILLGAVSPD-GLN-EILQQVAASIP 83 (268)
T ss_pred HHHHHHHHHHHHHHcC--CEEE--Eec-CCCCCCHHHHHHHHHHHHHcCCC---EEEEcCCChh-hHH-HHHHHHHCCCC
Confidence 3445666777788888 6653 232 22223456666778888888888 8876653321 111 22223457999
Q ss_pred EEEec
Q 017815 126 FIQIP 130 (365)
Q Consensus 126 ~i~IP 130 (365)
++.+=
T Consensus 84 vV~~~ 88 (268)
T cd06306 84 VIALV 88 (268)
T ss_pred EEEec
Confidence 99883
No 268
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=40.92 E-value=1.2e+02 Score=25.19 Aligned_cols=57 Identities=21% Similarity=0.365 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh--hHHHHH
Q 017815 49 YLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
....+.+.|++.| +++..+. +++ +.+.+.+.++.+.+ ++| +||.-||=+.. |.+.-+
T Consensus 28 n~~~l~~~l~~~G--~~v~~~~~v~D-----d~~~i~~~l~~~~~-~~D---liIttGG~g~g~~D~t~~a 87 (144)
T TIGR00177 28 NGPLLAALLEEAG--FNVSRLGIVPD-----DPEEIREILRKAVD-EAD---VVLTTGGTGVGPRDVTPEA 87 (144)
T ss_pred cHHHHHHHHHHCC--CeEEEEeecCC-----CHHHHHHHHHHHHh-CCC---EEEECCCCCCCCCccHHHH
Confidence 3455666777888 6654332 232 45666666666543 556 99999876665 777654
No 269
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=40.79 E-value=1.8e+02 Score=27.92 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=48.7
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-----------------------C----CCHHHHHHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-----------------------Y----KNMDTLMKVF 87 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-----------------------~----~~~~~v~~~~ 87 (365)
.|++|+++.+....+...+.+.|++.+ .++.++... +.. . .....+.++.
T Consensus 2 ~ki~i~~Ggt~G~i~~a~l~~~L~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAGLIRALKARA--PNLEFVGVG-GPRMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLK 78 (380)
T ss_pred ceEEEEecCcCHHHHHHHHHHHHHhcC--CCcEEEEEc-cHHHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 367777777776665555777777654 233333221 110 0 0134556677
Q ss_pred HHHHHcCCCCcceEEEecCch-HhhHHHHHHHHhhcCCcEEEe
Q 017815 88 DKAIESRLDRRCTFVALGGGV-IGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 88 ~~~~~~~~dr~~~IIaiGGGs-v~D~ak~vA~~~~~g~p~i~I 129 (365)
+.+++.++| +|+.+|.-+ ..=+++ .+...++|++..
T Consensus 79 ~~l~~~kPd---ivi~~~~~~~~~~~a~---~a~~~~ip~i~~ 115 (380)
T PRK00025 79 RRLLAEPPD---VFIGIDAPDFNLRLEK---KLRKAGIPTIHY 115 (380)
T ss_pred HHHHHcCCC---EEEEeCCCCCCHHHHH---HHHHCCCCEEEE
Confidence 778888888 999998421 112232 233468997764
No 270
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=40.51 E-value=2.7e+02 Score=24.89 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=57.5
Q ss_pred chhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
.++++.++ -+++.++++..-+ ....+.+.+.+++.| +.+..... .. .....+.+.+..+++.+.+ +||.
T Consensus 132 ~~~l~~~~-w~~v~~v~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~--~~--~~~~~~~~~l~~l~~~~~~---viv~ 201 (298)
T cd06269 132 VDLLKHFG-WTWVGLVYSDDDYGRRLLELLEEELEKNG--ICVAFVES--IP--DGSEDIRRLLKELKSSTAR---VIVV 201 (298)
T ss_pred HHHHHHCC-CeEEEEEEecchhhHHHHHHHHHHHHHCC--eeEEEEEE--cC--CCHHHHHHHHHHHHhcCCc---EEEE
Confidence 55666553 5788888887653 336666777777766 55432221 11 1226788888888887775 8888
Q ss_pred ecCchHhhHHHHHHHHhhcCC--cEEEeccc
Q 017815 104 LGGGVIGDMCGYAAASYLRGV--SFIQIPTT 132 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~~~g~--p~i~IPTT 132 (365)
.+.+ -|+..++..+...|. .+.-|-++
T Consensus 202 ~~~~--~~~~~~l~~a~~~g~~~~~~~i~~~ 230 (298)
T cd06269 202 FSSE--EDALRLLEEAVELGMMTGYHWIITD 230 (298)
T ss_pred Eech--HHHHHHHHHHHHcCCCCCeEEEEEC
Confidence 8764 345545544455554 44444444
No 271
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.30 E-value=72 Score=28.84 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=48.5
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
.+|+.+|=.+.++..+..+.+.+.-+..|..++|+.|. .|.+.++++.+.+++.|+. -|+|.+-
T Consensus 68 LAk~PVISVNGN~AAL~p~e~v~La~~~~aklEVNLF~-------RteeRv~~I~e~L~~~Ga~---~vLg~~~ 131 (256)
T COG1701 68 LAKHPVISVNGNVAALVPEEVVELAEATGAKLEVNLFY-------RTEERVRKIAEVLKEHGAK---EVLGTDP 131 (256)
T ss_pred hccCCeEEEcCceeeeCcHHHHHHHHHhCCceEEEeec-------cCHHHHHHHHHHHHhcCcc---eeecCCc
Confidence 36788998999998887777766555444447777652 3778999999999999987 6887763
No 272
>PRK10481 hypothetical protein; Provisional
Probab=40.26 E-value=2.9e+02 Score=25.18 Aligned_cols=96 Identities=11% Similarity=-0.037 Sum_probs=60.7
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
+.++..+..++|+-|++-.. +...+..+ .+.+.| +++.. .... ....+.+.+.+..+.+.+.|+| +||=-
T Consensus 120 ~~lv~Al~~g~riGVitP~~--~qi~~~~~-kw~~~G--~~v~~-~~as-py~~~~~~l~~aa~~L~~~gaD---~Ivl~ 189 (224)
T PRK10481 120 PPLVAAIVGGHQVGVIVPVE--EQLAQQAQ-KWQVLQ--KPPVF-ALAS-PYHGSEEELIDAGKELLDQGAD---VIVLD 189 (224)
T ss_pred HHHHHHhcCCCeEEEEEeCH--HHHHHHHH-HHHhcC--CceeE-eecC-CCCCCHHHHHHHHHHhhcCCCC---EEEEe
Confidence 56667766677877776532 22233333 344447 66642 2211 1125667788888888888888 88888
Q ss_pred cCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 105 GGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.|-.......+ .-..|+|+|..-+.
T Consensus 190 C~G~~~~~~~~l--e~~lg~PVI~~n~a 215 (224)
T PRK10481 190 CLGYHQRHRDLL--QKALDVPVLLSNVL 215 (224)
T ss_pred CCCcCHHHHHHH--HHHHCcCEEcHHHH
Confidence 888888776655 33579999876555
No 273
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=40.25 E-value=22 Score=31.00 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.0
Q ss_pred ceEEEecCchHhhHHHH
Q 017815 99 CTFVALGGGVIGDMCGY 115 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~ 115 (365)
+.|||-|||++++=--.
T Consensus 73 ~~ViaTGGG~v~~~enr 89 (172)
T COG0703 73 NAVIATGGGAVLSEENR 89 (172)
T ss_pred CeEEECCCccccCHHHH
Confidence 39999999999976543
No 274
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=40.07 E-value=1.2e+02 Score=25.52 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=52.9
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|=+|..-.+ +.+.|.+.|++.| ++|.-+ . .++..-.+...++.+.+.+..++|.=+|-+-|=|+.|=+-|
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~g--~eV~D~--G-~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANK- 74 (141)
T PRK12613 2 AIILGADAHGNA-LKELIKSFLQEEG--YDIIDV--T-DINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATK- 74 (141)
T ss_pred EEEEEeCcchHH-HHHHHHHHHHHCC--CEEEEc--C-CCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhc-
Confidence 466777776555 6899999999998 776432 2 23333345577777777777777655555556555544443
Q ss_pred HHHHhhcCCcEEEecc
Q 017815 116 AAASYLRGVSFIQIPT 131 (365)
Q Consensus 116 vA~~~~~g~p~i~IPT 131 (365)
..|++...+-.
T Consensus 75 -----v~GIRaA~~~d 85 (141)
T PRK12613 75 -----LKGMVAAEVSD 85 (141)
T ss_pred -----CCCeEEEEECC
Confidence 35776665533
No 275
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=39.94 E-value=3.2e+02 Score=25.50 Aligned_cols=81 Identities=11% Similarity=0.014 Sum_probs=48.3
Q ss_pred chhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+.+ .+|+.++.+...+ ....+.+.+.+++.| +++... .++. ........+.++++.++| .|+
T Consensus 128 ~~~l~~~g-~~~v~~l~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~~-----~~~d~~~~~~~l~~~~~d---av~ 196 (336)
T cd06326 128 VRHLVTLG-LKRIAVFYQDDAFGKDGLAGVEKALAARG--LKPVATASYER-----NTADVAAAVAQLAAARPQ---AVI 196 (336)
T ss_pred HHHHHHhC-CceEEEEEecCcchHHHHHHHHHHHHHcC--CCeEEEEeecC-----CcccHHHHHHHHHhcCCC---EEE
Confidence 34455543 6888888765443 336677788888888 554222 2222 223556666777776766 888
Q ss_pred EecCc-hHhhHHHHH
Q 017815 103 ALGGG-VIGDMCGYA 116 (365)
Q Consensus 103 aiGGG-sv~D~ak~v 116 (365)
..+.+ ..+.+.|.+
T Consensus 197 ~~~~~~~a~~~i~~~ 211 (336)
T cd06326 197 MVGAYKAAAAFIRAL 211 (336)
T ss_pred EEcCcHHHHHHHHHH
Confidence 88755 345554433
No 276
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=39.73 E-value=44 Score=30.93 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=23.0
Q ss_pred cceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.|+||.+|| |+.+-++... ...++|++-|.+.
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~---~~~~~PvlGIN~G 58 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRY---MNSGKPVYGMNRG 58 (246)
T ss_pred CCEEEEECCCHHHHHHHHHh---cCCCCeEEEEeCC
Confidence 359999998 7777666543 3467888888664
No 277
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=39.57 E-value=2.1e+02 Score=28.64 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=54.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC------CCCHHHHHHHHHHHHHcCCCCcceEEEecCc
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN------YKNMDTLMKVFDKAIESRLDRRCTFVALGGG 107 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~------~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGG 107 (365)
.+|++|+......+.+.+.+.+. ...| +.+.-+.-++... .|-..+.+++.+.+++.++| .++||+-.-
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~-~~~g--~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd--~ViIA~p~~ 202 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARN-PELG--YRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVD--EVYIALPLA 202 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhC-ccCC--cEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCC--EEEEeeCcc
Confidence 46788887776554444444321 1223 4443332222111 12233456677777778887 488888765
Q ss_pred hHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 108 VIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 108 sv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+--+....+......|+++..+|..
T Consensus 203 ~~~~~~~ll~~~~~~gv~V~vvP~~ 227 (451)
T TIGR03023 203 AEDRILELLDALEDLTVDVRLVPDL 227 (451)
T ss_pred cHHHHHHHHHHHHhcCCEEEEeCch
Confidence 5555555555555678999999987
No 278
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.09 E-value=2.8e+02 Score=24.75 Aligned_cols=74 Identities=9% Similarity=0.119 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.... .+ . +.+.-.++.+.+.+.++| .||-.+.-. |- .+......++
T Consensus 16 ~~~~~~~~i~~~~~~~g--~~~~~~~-~~--~--~~~~~~~~~~~l~~~~vd---giii~~~~~--~~--~~~~l~~~~i 81 (268)
T cd06277 16 FYSEIYRAIEEEAKKYG--YNLILKF-VS--D--EDEEEFELPSFLEDGKVD---GIILLGGIS--TE--YIKEIKELGI 81 (268)
T ss_pred cHHHHHHHHHHHHHHcC--CEEEEEe-CC--C--ChHHHHHHHHHHHHCCCC---EEEEeCCCC--hH--HHHHHhhcCC
Confidence 34457778888888888 6653322 21 1 223444566667778888 888776322 21 1222234689
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+=..
T Consensus 82 pvV~~~~~ 89 (268)
T cd06277 82 PFVLVDHY 89 (268)
T ss_pred CEEEEccC
Confidence 99988443
No 279
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=39.01 E-value=1.9e+02 Score=24.53 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=45.8
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
-.+.+.+. .++++++-|....+.+.+.+.+.-...| +++.++ ++++.++.+.+...++..++|=+
T Consensus 18 ~~W~~~~~-~~~IiVvdD~~A~D~~~k~~lkma~P~g--vk~~i~------------sve~a~~~l~~~~~~~~~v~vl~ 82 (151)
T TIGR00854 18 TTWTKVAG-ANRIIVVNDDVANDEVRQTLMGIVAPTG--FKVRFV------------SLEKTINVIHKPAYHDQTIFLLF 82 (151)
T ss_pred hhhhcccC-CCEEEEEcccccCCHHHHHHHHhhCCCC--CEEEEE------------EHHHHHHHHhCcCCCCceEEEEE
Confidence 44555553 6777777777666667777666555566 655432 34556666665444544466666
Q ss_pred cCchHhhHHHHH
Q 017815 105 GGGVIGDMCGYA 116 (365)
Q Consensus 105 GGGsv~D~ak~v 116 (365)
+ ++-|+.+.+
T Consensus 83 k--~~~da~~l~ 92 (151)
T TIGR00854 83 R--NPQDVLTLV 92 (151)
T ss_pred C--CHHHHHHHH
Confidence 5 788888765
No 280
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=38.80 E-value=3e+02 Score=26.26 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=63.9
Q ss_pred chhhhhc--cCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRH--VQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~--~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
++.++.+ ...+++.+++-.+......+.+.+.|.+..+++.+ .+.+.-++.|.+.-+++.+.++ .+| ++|
T Consensus 144 ~~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v---~~~nTIC~aT~~RQ~a~~~La~--~vD---~mi 215 (298)
T PRK01045 144 PEDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQG---PPKDDICYATQNRQEAVKELAP--QAD---LVI 215 (298)
T ss_pred HHHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCccc---CCCCCcchhhHHHHHHHHHHHh--hCC---EEE
Confidence 4444554 22366666664444444667777777665422221 1245666777777666666554 356 999
Q ss_pred EecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 103 ALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
-|||=..-.+.|.+-.+-..+.|-..|=|.
T Consensus 216 VVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~ 245 (298)
T PRK01045 216 VVGSKNSSNSNRLREVAEEAGAPAYLIDDA 245 (298)
T ss_pred EECCCCCccHHHHHHHHHHHCCCEEEECCh
Confidence 999999999999886555567788888666
No 281
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=38.67 E-value=3.9e+02 Score=26.31 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=52.3
Q ss_pred C-ceEEEEEccCchHHHHHH-HHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE-ecCchH
Q 017815 34 G-KKVLVVTNNTVAPLYLDK-VTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA-LGGGVI 109 (365)
Q Consensus 34 ~-~~~livtd~~~~~~~~~~-v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa-iGGGsv 109 (365)
| +|+++|-..-++..-..+ +++.+.+.| .++.- ..++=+ .+++..+++.+++.++| +|+. +.|.|.
T Consensus 133 G~~r~~lvGSdYv~pre~Nri~r~~l~~~G--gevvgE~Y~plg-----~td~~~ii~~I~~~~Pd---~V~stlvG~s~ 202 (363)
T PF13433_consen 133 GAKRFYLVGSDYVYPRESNRIIRDLLEARG--GEVVGERYLPLG-----ATDFDPIIAEIKAAKPD---FVFSTLVGDSN 202 (363)
T ss_dssp --SEEEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEEEE-S------HHHHHHHHHHHHHHT-S---EEEEE--TTCH
T ss_pred CCceEEEecCCccchHHHHHHHHHHHHHcC--CEEEEEEEecCC-----chhHHHHHHHHHhhCCC---EEEEeCcCCcH
Confidence 6 999999999999885555 455677777 55421 223432 37899999999999888 7775 555666
Q ss_pred hhHHHHHHHH-hh-cCCcEEEeccc
Q 017815 110 GDMCGYAAAS-YL-RGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~-~~-~g~p~i~IPTT 132 (365)
...-+..+.+ +. ..+|+.+.-|+
T Consensus 203 ~aF~r~~~~aG~~~~~~Pi~S~~~~ 227 (363)
T PF13433_consen 203 VAFYRAYAAAGLDPERIPIASLSTS 227 (363)
T ss_dssp HHHHHHHHHHH-SSS---EEESS--
T ss_pred HHHHHHHHHcCCCcccCeEEEEecC
Confidence 6665555433 22 23666666555
No 282
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=38.53 E-value=2.8e+02 Score=24.58 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh-hHHHHHHHHhhcC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG-DMCGYAAASYLRG 123 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~-D~ak~vA~~~~~g 123 (365)
.+..+.+.+.+.+++.| +++.++ ..+ .. +.+...+.++.+.+.++| .||..+..... +..+ ....+
T Consensus 13 ~~~~~~~gi~~~~~~~~--~~~~~~-~~~-~~--~~~~~~~~~~~l~~~~vd---giii~~~~~~~~~~~~----~~~~~ 79 (264)
T cd01574 13 GPSSTLAAIESAAREAG--YAVTLS-MLA-EA--DEEALRAAVRRLLAQRVD---GVIVNAPLDDADAALA----AAPAD 79 (264)
T ss_pred cHHHHHHHHHHHHHHCC--CeEEEE-eCC-CC--chHHHHHHHHHHHhcCCC---EEEEeCCCCChHHHHH----HHhcC
Confidence 34557788888888887 665433 221 11 235666777778888888 88877654332 2222 23568
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|+|.+=+.
T Consensus 80 ipvv~~~~~ 88 (264)
T cd01574 80 VPVVFVDGS 88 (264)
T ss_pred CCEEEEecc
Confidence 999999655
No 283
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=38.41 E-value=49 Score=30.31 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=26.3
Q ss_pred cceEEEecCchHhhHH-HHHHHHhh-cCCcEEEecccc
Q 017815 98 RCTFVALGGGVIGDMC-GYAAASYL-RGVSFIQIPTTV 133 (365)
Q Consensus 98 ~~~IIaiGGGsv~D~a-k~vA~~~~-~g~p~i~IPTTl 133 (365)
+..+||+|.||+.-.. ++++.... .++.+..|||+.
T Consensus 21 ~gmvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~ 58 (228)
T PRK13978 21 GDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSN 58 (228)
T ss_pred CCCEEEeCchHHHHHHHHHHHHHhhccCccEEEEeCcH
Confidence 4589999999987743 66654443 246688899996
No 284
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=38.25 E-value=1.4e+02 Score=24.65 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch--HhhHHHHH
Q 017815 46 APLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV--IGDMCGYA 116 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs--v~D~ak~v 116 (365)
.+.-...+.+.|++.| +++... ++++ +.+.+.+.+..+.+.. | +||-.||-+ .-|.+.-+
T Consensus 15 ~d~n~~~l~~~l~~~G--~~v~~~~~v~D-----d~~~i~~~l~~~~~~~-D---~VittGG~g~~~~D~t~~a 77 (144)
T PF00994_consen 15 RDSNGPFLAALLEELG--IEVIRYGIVPD-----DPDAIKEALRRALDRA-D---LVITTGGTGPGPDDVTPEA 77 (144)
T ss_dssp EBHHHHHHHHHHHHTT--EEEEEEEEEES-----SHHHHHHHHHHHHHTT-S---EEEEESSSSSSTTCHHHHH
T ss_pred EEhHHHHHHHHHHHcC--CeeeEEEEECC-----CHHHHHHHHHhhhccC-C---EEEEcCCcCcccCCcccHH
Confidence 3446777788888898 766433 4443 5667777776655433 5 999999654 56776644
No 285
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=38.06 E-value=2.8e+02 Score=26.51 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=10.4
Q ss_pred CCcceEEEecCchHh
Q 017815 96 DRRCTFVALGGGVIG 110 (365)
Q Consensus 96 dr~~~IIaiGGGsv~ 110 (365)
+.+.+|+++|||..+
T Consensus 167 ~~d~vvv~~G~Gg~~ 181 (317)
T TIGR02991 167 DLATVLVPLSGGGLA 181 (317)
T ss_pred CCCEEEEEcChhHHH
Confidence 334688899887654
No 286
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=38.02 E-value=1.4e+02 Score=25.79 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=47.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
+..+||-|... +.+.+.++++..| |.|.. -+++++.+..++..-+.-.-+=+=+|+||=+++..
T Consensus 10 ~~lllvdDD~~---f~~~LaRa~e~RG--f~v~~-----------a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~ 73 (182)
T COG4567 10 KSLLLVDDDTP---FLRTLARAMERRG--FAVVT-----------AESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIE 73 (182)
T ss_pred ceeEEecCChH---HHHHHHHHHhccC--ceeEe-----------eccHHHHHHHHhcCCCceEEEEeeecCCCchHHHH
Confidence 44666666654 7788899999999 76532 23667777777776655433445689999999987
Q ss_pred HHH
Q 017815 115 YAA 117 (365)
Q Consensus 115 ~vA 117 (365)
.+.
T Consensus 74 ~lr 76 (182)
T COG4567 74 ALR 76 (182)
T ss_pred HHH
Confidence 763
No 287
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=37.90 E-value=80 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=26.0
Q ss_pred ceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEE
Q 017815 35 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVEN 68 (365)
Q Consensus 35 ~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~ 68 (365)
+|++++++.++.-. ...++++.|++.| +++++
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~g--i~~~v 36 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHN--IPVEL 36 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCC--CeEEE
Confidence 47999999998665 4799999999999 66543
No 288
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=37.50 E-value=2.1e+02 Score=22.81 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=55.0
Q ss_pred ccchhhhhcc-CCceEEEEEccCchH---HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCc
Q 017815 23 SNNCLYYRHV-QGKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRR 98 (365)
Q Consensus 23 ~~~~~l~~~~-~~~~~livtd~~~~~---~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~ 98 (365)
+..+.++.+. .+-++.|+|+..... .+.+.+.+.++..+ +......+..+...|..+.++.+.+.+. +++.+
T Consensus 29 ~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~--l~~~~~~~~~~~~KP~~~~~~~~~~~~~--~~~~~ 104 (132)
T TIGR01662 29 EVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELG--VPIDVLYACPHCRKPKPGMFLEALKRFN--EIDPE 104 (132)
T ss_pred CHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCChHHHHHHHHHcC--CCChh
Confidence 3344555542 356899999976211 11344555566555 4322222222344566677777766542 34433
Q ss_pred ceEEEecCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
-++-||.++..|+..+ -..|++.|.+
T Consensus 105 -~~v~IGD~~~~Di~~A----~~~Gi~~i~~ 130 (132)
T TIGR01662 105 -ESVYVGDQDLTDLQAA----KRAGLAFILV 130 (132)
T ss_pred -heEEEcCCCcccHHHH----HHCCCeEEEe
Confidence 4677999888887643 2457777765
No 289
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=37.37 E-value=1.5e+02 Score=24.98 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=50.6
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|=+|..-++ +.+.|.+.|++.| ++|.-+ ...++..-.+-..++.+.+.+...+|.=+|-+=|=|..|=+-|
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~G--~eV~D~--G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaANK- 75 (142)
T PRK08621 2 AIIIGADKAGFE-LKEVVKDYLEDNK--YEVVDV--TEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATK- 75 (142)
T ss_pred EEEEEeCcchHH-HHHHHHHHHHHCC--CEEEEC--CCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhhc-
Confidence 466777776555 6889999999999 776433 2222323345567777777777677644555555555443333
Q ss_pred HHHHhhcCCcEEEe
Q 017815 116 AAASYLRGVSFIQI 129 (365)
Q Consensus 116 vA~~~~~g~p~i~I 129 (365)
..|++...+
T Consensus 76 -----~~GIRAA~~ 84 (142)
T PRK08621 76 -----IKGMVAAEV 84 (142)
T ss_pred -----CCCeEEEEE
Confidence 246665555
No 290
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=37.25 E-value=3e+02 Score=24.42 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++. .++.. . +.+.-.++++.+...++| .||..+........+ ....++
T Consensus 13 ~~~~~~~~i~~~~~~~g--~~~~--~~~~~-~--~~~~~~~~~~~~~~~~vd---giii~~~~~~~~~~~----~~~~~i 78 (267)
T cd06284 13 FFSEILKGIEDEAREAG--YGVL--LGDTR-S--DPEREQEYLDLLRRKQAD---GIILLDGSLPPTALT----ALAKLP 78 (267)
T ss_pred cHHHHHHHHHHHHHHcC--CeEE--EecCC-C--ChHHHHHHHHHHHHcCCC---EEEEecCCCCHHHHH----HHhcCC
Confidence 44557888888899988 6653 33322 2 344556777788888888 777776543322222 224599
Q ss_pred cEEEecc
Q 017815 125 SFIQIPT 131 (365)
Q Consensus 125 p~i~IPT 131 (365)
|++.+-.
T Consensus 79 pvv~~~~ 85 (267)
T cd06284 79 PIVQACE 85 (267)
T ss_pred CEEEEec
Confidence 9998743
No 291
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=37.13 E-value=91 Score=26.49 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=51.5
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
|+.|=+|..-++ +.+.+.+.|++.| ++|.-+-..+.+ +..-.+-..++.+.+.+..++|.=+|-+=|=|..|=.-|
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~g--~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK 78 (148)
T TIGR02133 2 RVVLGHDHAGFE-YKEALWLDLAAHE--PEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAANK 78 (148)
T ss_pred EEEEEeCchhHH-HHHHHHHHHHHCC--CEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhheeeecc
Confidence 466667776554 6888999999998 776543322223 223445677777777777777544444444444443333
Q ss_pred HHHHHhhcCCcEEEecc
Q 017815 115 YAAASYLRGVSFIQIPT 131 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPT 131 (365)
+ .|++...+-.
T Consensus 79 ~------~GiRAA~~~d 89 (148)
T TIGR02133 79 V------KGARAALAWD 89 (148)
T ss_pred c------CCeEEEEECC
Confidence 2 4666655533
No 292
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=37.03 E-value=3.3e+02 Score=25.57 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHhh-CCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 45 VAPLYLDKVTDALTR-GNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~-~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
+...-.+++.+.+-+ .| ++-. ++. ..|| ..=|.++-.++++.+.+.-..|-.+|+++|..++-|+...+..+..
T Consensus 21 iD~~~~~~li~~l~~~~G--v~gi-~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~ 97 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQG--IDGL-YVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATE 97 (293)
T ss_pred cCHHHHHHHHHHHHhcCC--CCEE-EECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHH
Confidence 333345555556666 77 5432 222 2355 4567788888888777754455569999999999888877766667
Q ss_pred cCCcEEEeccc
Q 017815 122 RGVSFIQIPTT 132 (365)
Q Consensus 122 ~g~p~i~IPTT 132 (365)
.|..-+.+.+-
T Consensus 98 ~Gad~v~v~~P 108 (293)
T PRK04147 98 LGYDAISAVTP 108 (293)
T ss_pred cCCCEEEEeCC
Confidence 78877776554
No 293
>PRK12483 threonine dehydratase; Reviewed
Probab=36.97 E-value=2.5e+02 Score=29.09 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=21.9
Q ss_pred cceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+.+|||..+- +++++.. ....+++|.|-+.
T Consensus 188 D~VvvpvGgGGliaGia~~~K~-~~p~vkVIGVep~ 222 (521)
T PRK12483 188 DAIFVPVGGGGLIAGIAAYVKY-VRPEIKVIGVEPD 222 (521)
T ss_pred CEEEEecCccHHHHHHHHHHHH-hCCCCEEEEEEeC
Confidence 45999999988763 3443321 3456788887664
No 294
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=36.92 E-value=3e+02 Score=26.88 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=51.8
Q ss_pred chhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCC--CCHHHHHHHHHHHHHcCCCCcce
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENV-ILPDGENY--KNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~--~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
..+++.+. -+|+.++++..-+ +...+.+.+.+++.| +++... .++.++.. .+...+.+++..++.. ...
T Consensus 128 ~~~~~~~~-w~~vaii~~~~~~g~~~~~~~~~~~~~~g--~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 200 (404)
T cd06370 128 IALLKHFN-WNKFSVVYENDSKYSSVFETLKEEAELRN--ITISHVEYYADFYPPDPIMDNPFEDIIQRTKET----TRI 200 (404)
T ss_pred HHHHHHCC-CcEEEEEEecCcccHHHHHHHHHHHHHcC--CEEEEEEEECCCCCchhhhHHHHHHHHHhccCC----CEE
Confidence 44455553 5889999886644 447788888888888 665322 23333210 1134566665554432 236
Q ss_pred EEEecCchHhhHHHHHHHHhhcCC
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+|.+|+. -|+..++..+...|+
T Consensus 201 ~v~~~~~--~~~~~~l~qa~~~g~ 222 (404)
T cd06370 201 YVFIGEA--NELRQFLMSMLDEGL 222 (404)
T ss_pred EEEEcCH--HHHHHHHHHHHHcCC
Confidence 7777643 566666655555554
No 295
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=36.86 E-value=2.1e+02 Score=26.97 Aligned_cols=34 Identities=6% Similarity=0.019 Sum_probs=22.4
Q ss_pred cceEEEecCchHh-hHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIG-DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~-D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+++|||..+ =+++++.. +...++++.|-+.
T Consensus 165 d~iv~~vG~Gg~~~Gv~~~lk~-~~~~~kvi~Vep~ 199 (290)
T TIGR01138 165 THFVSSMGTTGTIMGVSRFLKE-QNPPVQIVGLQPE 199 (290)
T ss_pred CEEEECCCchHHHHHHHHHHHH-hCCCCEEEEEeCC
Confidence 4578899888776 55555532 3456788888554
No 296
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.76 E-value=3.7e+02 Score=25.53 Aligned_cols=85 Identities=14% Similarity=0.026 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhc
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 122 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~ 122 (365)
+...-.+++.+.+-++| ++- +++. ..|| +.=|.++-.++++.+.+.--+|--+|+++|+-++-|+...+-.+...
T Consensus 26 iD~~~l~~lv~~li~~G--v~G-i~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 26 VDLDETARLVERLIAAG--VDG-ILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred cCHHHHHHHHHHHHHcC--CCE-EEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 43334556666666677 442 2222 2355 35677888888888777554555699999999999998888766777
Q ss_pred CCcEEEeccc
Q 017815 123 GVSFIQIPTT 132 (365)
Q Consensus 123 g~p~i~IPTT 132 (365)
|..-+.|-+-
T Consensus 103 Gad~vlv~~P 112 (309)
T cd00952 103 GADGTMLGRP 112 (309)
T ss_pred CCCEEEECCC
Confidence 8876665443
No 297
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.64 E-value=3.3e+02 Score=24.89 Aligned_cols=76 Identities=11% Similarity=-0.006 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.+ +.. +. +.+...+.++.+...++| .||..+..... ....+......|+
T Consensus 13 ~~~~~~~gi~~~a~~~g--~~~~~--~~~-~~--~~~~~~~~i~~~~~~~vd---giii~~~~~~~-~~~~l~~l~~~~i 81 (288)
T cd01538 13 RWIRDRPNFEAALKELG--AEVIV--QNA-NG--DPAKQISQIENMIAKGVD---VLVIAPVDGEA-LASAVEKAADAGI 81 (288)
T ss_pred HHHHHHHHHHHHHHHcC--CEEEE--ECC-CC--CHHHHHHHHHHHHHcCCC---EEEEecCChhh-HHHHHHHHHHCCC
Confidence 34557778888888888 66533 332 22 445667777778888888 88877643211 1122222335789
Q ss_pred cEEEecc
Q 017815 125 SFIQIPT 131 (365)
Q Consensus 125 p~i~IPT 131 (365)
|+|.+=.
T Consensus 82 pvV~~~~ 88 (288)
T cd01538 82 PVIAYDR 88 (288)
T ss_pred CEEEECC
Confidence 9998843
No 298
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=36.63 E-value=1.5e+02 Score=27.90 Aligned_cols=82 Identities=12% Similarity=0.042 Sum_probs=51.2
Q ss_pred cceeeecccchhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcC
Q 017815 16 SDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR 94 (365)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~ 94 (365)
+.+..|-+.-+.+-.++.|.|.+|+.+.++.+. +...+.+....+. -.+.++ .--|| .-+++.++++.+.+.+
T Consensus 51 e~L~TGIr~ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~--~~~~V~-~~iGe---r~~Ev~e~~~~~~~~~ 124 (274)
T cd01133 51 EILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAH--GGYSVF-AGVGE---RTREGNDLYHEMKESG 124 (274)
T ss_pred cccccCceeeeccCCcccCCEEEEecCCCCChhHHHHHHHHHHHhcC--CCEEEE-EEecc---CcHHHHHHHHHHHhcC
Confidence 344445555666777777999999999999886 5666655554321 122222 22344 4578888888888766
Q ss_pred CCCcceEEE
Q 017815 95 LDRRCTFVA 103 (365)
Q Consensus 95 ~dr~~~IIa 103 (365)
.-..++||+
T Consensus 125 ~~~~tvvv~ 133 (274)
T cd01133 125 VLSKTALVY 133 (274)
T ss_pred CcceeEEEE
Confidence 544444444
No 299
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.42 E-value=3.1e+02 Score=24.39 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.+ ..... ..+...++.+.+.+.++| .||-.+....-+. +......|+
T Consensus 18 ~~~~~~~~~~~~~~~~g--~~~~~--~~~~~---~~~~~~~~~~~~~~~~~d---giii~~~~~~~~~---~~~~~~~~i 84 (270)
T cd06294 18 FFIEVLRGISAVANENG--YDISL--ATGKN---EEELLEEVKKMIQQKRVD---GFILLYSREDDPI---IDYLKEEKF 84 (270)
T ss_pred CHHHHHHHHHHHHHHCC--CEEEE--ecCCC---cHHHHHHHHHHHHHcCcC---EEEEecCcCCcHH---HHHHHhcCC
Confidence 44557788888888888 66532 22211 234455555556666778 8887765433222 222345799
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-+.
T Consensus 85 pvV~~~~~ 92 (270)
T cd06294 85 PFVVIGKP 92 (270)
T ss_pred CEEEECCC
Confidence 99999665
No 300
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=36.17 E-value=3.7e+02 Score=25.41 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=61.6
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
++.++.+...+++.+++-.+....-.+.+.+.|+...+++ .+.+.-++.|.+.=+++.+.++ .+| ++|-|
T Consensus 147 ~~d~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~-----~v~~TIC~aT~~RQ~a~~~La~--~vD---~miVV 216 (281)
T PRK12360 147 IEEVENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKEL-----VFFNTICSATKKRQESAKELSK--EVD---VMIVI 216 (281)
T ss_pred HHHHhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCccc-----ccCCCcchhhhhHHHHHHHHHH--hCC---EEEEe
Confidence 4444554334666666555554446667777777654222 2345556666666555555433 356 99999
Q ss_pred cCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 105 GGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
||=..-.+.|.+-.+-..+.|-..|=|.
T Consensus 217 Gg~~SsNT~rL~eia~~~~~~t~~Ie~~ 244 (281)
T PRK12360 217 GGKHSSNTQKLVKICEKNCPNTFHIETA 244 (281)
T ss_pred cCCCCccHHHHHHHHHHHCCCEEEECCh
Confidence 9999999999876555557777777665
No 301
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.93 E-value=2.9e+02 Score=24.86 Aligned_cols=74 Identities=4% Similarity=0.004 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH--hhHHHHHHHHhhcC
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI--GDMCGYAAASYLRG 123 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv--~D~ak~vA~~~~~g 123 (365)
+....+.+.+.+++.| +++.. +.. +.+.+.-.+.++.+...++| .||-.+...- .+..+ .+...|
T Consensus 14 ~~~~~~~i~~~~~~~g--~~v~~--~~~---~~~~~~~~~~i~~~~~~~~D---giii~~~~~~~~~~~i~---~~~~~~ 80 (282)
T cd06318 14 FAALTEAAKAHAKALG--YELIS--TDA---QGDLTKQIADVEDLLTRGVN---VLIINPVDPEGLVPAVA---AAKAAG 80 (282)
T ss_pred HHHHHHHHHHHHHHcC--CEEEE--EcC---CCCHHHHHHHHHHHHHcCCC---EEEEecCCccchHHHHH---HHHHCC
Confidence 4446777778888888 66533 222 22455666778888888888 7765443221 23322 233579
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|++.+=+.
T Consensus 81 iPvV~~~~~ 89 (282)
T cd06318 81 VPVVVVDSS 89 (282)
T ss_pred CCEEEecCC
Confidence 999998554
No 302
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=35.83 E-value=1.8e+02 Score=24.78 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=49.5
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCH-HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNM-DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~-~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
|+.|-+|...+. +.+.|.+.|++.| ++|.-+--...+..-++ +-...+++.......|+.=+|-|-|=|..+-+-|
T Consensus 2 kIaig~Dhag~~-lK~~I~~~Lk~~g--~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~~iaANK 78 (151)
T COG0698 2 KIAIGSDHAGYE-LKEIIIDHLKSKG--YEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGMSIAANK 78 (151)
T ss_pred cEEEEcCcccHH-HHHHHHHHHHHCC--CEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhHHHHhhc
Confidence 567777877655 6889999999998 77643211222211233 3345556666655666545555556565554444
Q ss_pred HHHHHhhcCCcEEEe
Q 017815 115 YAAASYLRGVSFIQI 129 (365)
Q Consensus 115 ~vA~~~~~g~p~i~I 129 (365)
..|++...+
T Consensus 79 ------v~GiraAl~ 87 (151)
T COG0698 79 ------VPGIRAALV 87 (151)
T ss_pred ------cCCeEEEEe
Confidence 357765555
No 303
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=35.68 E-value=3.9e+02 Score=25.69 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=56.8
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
.++++.+ +-+++.+++|..-.....+.+.+.+++.|..+.+....+.. ....+.+...+..+++.+.+ .||-.
T Consensus 118 ~~~~~~~-~wk~vaii~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~~~---~~~~~d~~~~L~~ik~~~~~---~iil~ 190 (382)
T cd06380 118 VDLIEHY-GWRKVVYLYDSDRGLLRLQQLLDYLREKDNKWQVTARRVDN---VTDEEEFLRLLEDLDRRKEK---RIVLD 190 (382)
T ss_pred HHHHHhc-CCeEEEEEECCCcchHHHHHHHHHHhccCCceEEEEEEecC---CCcHHHHHHHHHHhhcccce---EEEEE
Confidence 4555555 36899999986643334556667777665112332222221 11236788888888888777 66653
Q ss_pred cCchHhhHHHHHHHHhhcC---CcEEEeccc
Q 017815 105 GGGVIGDMCGYAAASYLRG---VSFIQIPTT 132 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g---~p~i~IPTT 132 (365)
+..-|.+.++-.+...| ..++-|-|+
T Consensus 191 --~~~~~~~~i~~qa~~~gm~~~~y~~i~~~ 219 (382)
T cd06380 191 --CESERLNKILEQIVDVGKNRKGYHYILAN 219 (382)
T ss_pred --CCHHHHHHHHHHHHHhhhcccceEEEEcc
Confidence 34467777765554444 444434344
No 304
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=35.55 E-value=1.2e+02 Score=23.51 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=26.6
Q ss_pred ceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEE
Q 017815 35 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVEN 68 (365)
Q Consensus 35 ~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~ 68 (365)
.|++.+++.++... ...+|++.|++.|.++++..
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~ 37 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQ 37 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeee
Confidence 58999999998776 78999999999993224433
No 305
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=35.43 E-value=2.9e+02 Score=24.85 Aligned_cols=76 Identities=8% Similarity=0.075 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +++. +++. .. +.+.-.+.++.+...++| .||-.+...- .....+......++|
T Consensus 14 ~~~~~~~~~~~a~~~g--~~~~--~~~~-~~--~~~~~~~~i~~l~~~~vd---giIi~~~~~~-~~~~~i~~~~~~~iP 82 (273)
T cd06309 14 RTAETKSIKDAAEKRG--FDLK--FADA-QQ--KQENQISAIRSFIAQGVD---VIILAPVVET-GWDPVLKEAKAAGIP 82 (273)
T ss_pred HHHHHHHHHHHHHhcC--CEEE--EeCC-CC--CHHHHHHHHHHHHHcCCC---EEEEcCCccc-cchHHHHHHHHCCCC
Confidence 3446777888888888 6653 3332 22 455666777778888888 7876654321 111223333457999
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
++.+=+.
T Consensus 83 vV~~~~~ 89 (273)
T cd06309 83 VILVDRG 89 (273)
T ss_pred EEEEecC
Confidence 9998654
No 306
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=35.43 E-value=1.7e+02 Score=24.99 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=30.0
Q ss_pred EccCchHH-HHHHHHHHHhh--CCCCceEEEEEeCCCCCCCCHHHHHHHHHHH-HHcCCCCcceEEEecCch
Q 017815 41 TNNTVAPL-YLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKA-IESRLDRRCTFVALGGGV 108 (365)
Q Consensus 41 td~~~~~~-~~~~v~~~L~~--~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~-~~~~~dr~~~IIaiGGGs 108 (365)
.|.+..+. ...--.+.|++ .| +++..+.+|+. +| +--.++++ ++.++| .||++|-=.
T Consensus 5 ~~ttf~~~~M~~gA~~~L~~~g~g--~~i~v~~VPGa-----~E-iP~aak~l~~~~~~D---aVIaLG~VI 65 (151)
T TIGR01506 5 ADTTFARYDMGGAAIDELRKHTAG--IKIIRRTVPGI-----KD-LPVAAKKLLEEEGCE---MVITLGWVG 65 (151)
T ss_pred ecchhhhhhHHHHHHHHHHhcCCC--CeEEEEECCcH-----hH-HHHHHHHHHhcCCCC---EEEEeceEE
Confidence 44443332 34444555666 56 66666666652 22 22233333 335566 999998543
No 307
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=35.37 E-value=1.4e+02 Score=28.10 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=51.7
Q ss_pred chhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+.. .+|+.+++....+. ...+.+.+.+++.| +++.. ..++. +..++...+.++++.++| .|+
T Consensus 124 ~~~~~~~~-~~~v~il~~d~~~g~~~~~~~~~~~~~~G--~~vv~~~~~~~-----~~~d~~~~v~~~~~~~~d---~v~ 192 (333)
T cd06331 124 IPYLMEKY-GKRFYLIGSDYVWPRESNRIARALLEELG--GEVVGEEYLPL-----GTSDFGSVIEKIKAAGPD---VVL 192 (333)
T ss_pred HHHHHHhc-CCeEEEECCCchhHHHHHHHHHHHHHHcC--CEEEEEEEecC-----CcccHHHHHHHHHHcCCC---EEE
Confidence 34444433 68888887665543 36777888888888 66532 23332 234677777888888887 777
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
-.|.+ -|.+.++-.....|.
T Consensus 193 ~~~~~--~~~~~~~~~~~~~g~ 212 (333)
T cd06331 193 STLVG--DSNVAFYRQFAAAGL 212 (333)
T ss_pred EecCC--CChHHHHHHHHHcCC
Confidence 65543 233444433333444
No 308
>PRK06381 threonine synthase; Validated
Probab=35.27 E-value=3.9e+02 Score=25.27 Aligned_cols=73 Identities=8% Similarity=0.079 Sum_probs=34.7
Q ss_pred hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCC--CH----HHHHHHHHHHHHcCCCCcc
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYK--NM----DTLMKVFDKAIESRLDRRC 99 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~--~~----~~v~~~~~~~~~~~~dr~~ 99 (365)
+.++.+ +.++.++.+. ++...+...+..++.+ ++....+..|+ .. ....++++++.. .+ +.
T Consensus 103 ~~l~~~--GA~V~~~~~~--~~~~~~~a~~~~~~~~------~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~-~~--D~ 169 (319)
T PRK06381 103 KEMEKY--GAEIIYVDGK--YEEAVERSRKFAKENG------IYDANPGSVNSVVDIEAYSAIAYEIYEALGD-VP--DA 169 (319)
T ss_pred HHHHHc--CCEEEEcCCC--HHHHHHHHHHHHHHcC------cEecCCCCCCcchHhhhHHHHHHHHHHHhCC-CC--CE
Confidence 345554 5677777653 3333344444444444 12223332233 12 234455555431 12 45
Q ss_pred eEEEecCchHhh
Q 017815 100 TFVALGGGVIGD 111 (365)
Q Consensus 100 ~IIaiGGGsv~D 111 (365)
+|+++|+|..+-
T Consensus 170 vv~~vGtGgt~~ 181 (319)
T PRK06381 170 VAVPVGNGTTLA 181 (319)
T ss_pred EEEcCCccHHHH
Confidence 888888777543
No 309
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=35.10 E-value=2.9e+02 Score=23.62 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=36.1
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCC-CceEEEEEeCCCCCCCCHHHHHHHHHHHH-HcCCCCcceEEEec
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNP-NVSVENVILPDGENYKNMDTLMKVFDKAI-ESRLDRRCTFVALG 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~-~i~v~~~~~~~~e~~~~~~~v~~~~~~~~-~~~~dr~~~IIaiG 105 (365)
+-|+.||..+--.+ ...+-..+.|++.|. .-++..+.+|+ .+ ++--.++.+. ..++| .||++|
T Consensus 12 ~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPG-----a~-EiP~a~~~l~~~~~~D---avIalG 79 (154)
T PRK00061 12 GLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPG-----AF-EIPLAAKKLAESGKYD---AVIALG 79 (154)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCC-----HH-HHHHHHHHHHHcCCCC---EEEEEe
Confidence 46888888875433 356666667777761 01234445554 23 3333333333 34566 999999
No 310
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=35.00 E-value=3.8e+02 Score=25.03 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHhhC-CCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 45 VAPLYLDKVTDALTRG-NPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~-g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
+.....+++.+.+.+. | ++- +++. ..|| +.=|.++-.++++.+.+.-..|-.+|+++|+.++-|+...+..+..
T Consensus 18 iD~~~~~~~i~~l~~~~G--v~g-i~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 18 INEDVLRAIVDYLIEKQG--VDG-LYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEE 94 (288)
T ss_pred CCHHHHHHHHHHHHhcCC--CCE-EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHH
Confidence 3333455555666556 7 443 1222 2244 3456677777777777654444558999999999777777655566
Q ss_pred cCCcEEEe
Q 017815 122 RGVSFIQI 129 (365)
Q Consensus 122 ~g~p~i~I 129 (365)
.|..-+.+
T Consensus 95 ~Gad~v~~ 102 (288)
T cd00954 95 LGYDAISA 102 (288)
T ss_pred cCCCEEEE
Confidence 78877765
No 311
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=34.83 E-value=1.6e+02 Score=25.97 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=44.9
Q ss_pred chhhhhccCCceEEEEEccCc---hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~---~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
.+.+.+. +.+++.++++... .+...+-+.+.+++.+..+... .... .+ .+.+...+.+..+.+.+. ..+.|
T Consensus 108 ~~~l~~~-g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~~~~~~~l~~~~-~~~~i 181 (264)
T cd06267 108 VEHLIEL-GHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEE-LIVE-GD--FSEESGYEAARELLASGE-RPTAI 181 (264)
T ss_pred HHHHHHC-CCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcc-eEEe-cc--cchhhHHHHHHHHHhcCC-CCcEE
Confidence 4555544 3578888877643 2223455666777766212211 1122 11 123444444444444442 23499
Q ss_pred EEecCchHhhHHHHHH
Q 017815 102 VALGGGVIGDMCGYAA 117 (365)
Q Consensus 102 IaiGGGsv~D~ak~vA 117 (365)
++.+++...-+++.+.
T Consensus 182 ~~~~~~~a~~~~~al~ 197 (264)
T cd06267 182 FAANDLMAIGALRALR 197 (264)
T ss_pred EEcCcHHHHHHHHHHH
Confidence 9888877666666553
No 312
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.82 E-value=2.8e+02 Score=26.50 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=46.8
Q ss_pred CceEEEEEccCchHH-HHHH---HHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 34 GKKVLVVTNNTVAPL-YLDK---VTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~-~~~~---v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
.+|+.++++...+-. +.+. ..+.|++.| +++.. ..++ +...++...+.++++.++| +|+..+-+.
T Consensus 145 ~k~v~ii~~~~~~g~~~~~~~~~~~~~~~~~G--~~vv~~~~~~-----~~~~D~~~~v~~ik~a~pD---~v~~~~~~~ 214 (357)
T cd06337 145 NKKVGILYPNDPDGNAFADPVIGLPAALADAG--YKLVDPGRFE-----PGTDDFSSQINAFKREGVD---IVTGFAIPP 214 (357)
T ss_pred CceEEEEeecCchhHHHHHhhhcccHHHHhCC--cEEecccccC-----CCCCcHHHHHHHHHhcCCC---EEEeCCCcc
Confidence 689999987665432 3333 335677778 66421 1122 2334577777888889998 887655443
Q ss_pred HhhHHHHHHHHhhcCC
Q 017815 109 IGDMCGYAAASYLRGV 124 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~ 124 (365)
|.+.++......|.
T Consensus 215 --~~~~~~~~~~~~G~ 228 (357)
T cd06337 215 --DFATFWRQAAQAGF 228 (357)
T ss_pred --HHHHHHHHHHHCCC
Confidence 66666544344443
No 313
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=34.70 E-value=2.9e+02 Score=23.52 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=58.9
Q ss_pred ccceeeecccchhhhhccC-CceEEEEEccCc------hH----HHHHHHHHHHhhCCCCceEEEEEe-C----------
Q 017815 15 NSDTLLLISNNCLYYRHVQ-GKKVLVVTNNTV------AP----LYLDKVTDALTRGNPNVSVENVIL-P---------- 72 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~-~~~~livtd~~~------~~----~~~~~v~~~L~~~g~~i~v~~~~~-~---------- 72 (365)
+.++.+-++..+.|+.+.. +-++.|+|++.- .+ .+.+.+...+.+.+ +....+.+ .
T Consensus 22 ~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~ 99 (176)
T TIGR00213 22 IDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERD--VDLDGIYYCPHHPEGVEEFR 99 (176)
T ss_pred HHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcC--CCccEEEECCCCCccccccc
Confidence 3455555667777777642 568999998763 11 12333444455544 33221111 1
Q ss_pred -C-CCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE-EEeccc
Q 017815 73 -D-GENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF-IQIPTT 132 (365)
Q Consensus 73 -~-~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~-i~IPTT 132 (365)
. ...-|..+.+..+++. .+.+..+++ -||- +..|+-.+. ..|++. +.+++.
T Consensus 100 ~~~~~~KP~p~~~~~a~~~---~~~~~~~~v-~VGD-s~~Di~aA~----~aG~~~~i~v~~g 153 (176)
T TIGR00213 100 QVCDCRKPKPGMLLQARKE---LHIDMAQSY-MVGD-KLEDMQAGV----AAKVKTNVLVRTG 153 (176)
T ss_pred CCCCCCCCCHHHHHHHHHH---cCcChhhEE-EEcC-CHHHHHHHH----HCCCcEEEEEecC
Confidence 1 1123566666666644 566655555 4987 677886433 458887 566553
No 314
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=34.59 E-value=3e+02 Score=23.71 Aligned_cols=72 Identities=10% Similarity=0.185 Sum_probs=43.4
Q ss_pred HHHHHHHHHhh--CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 49 YLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 49 ~~~~v~~~L~~--~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
+.+.+.+.+.+ .+ +++ ..++ ... +.+...+.++.+.+.++| .||+.+....... ........++|+
T Consensus 18 ~~~~~~~~~~~~g~~--~~~--~~~~-~~~--~~~~~~~~~~~~~~~~~d---~ii~~~~~~~~~~--~~~~~~~~~ip~ 85 (269)
T cd01391 18 LLAGIELAAEEIGRG--LEV--ILAD-SQS--DPERALEALRDLIQQGVD---GIIGPPSSSSALA--VVELAAAAGIPV 85 (269)
T ss_pred HHHHHHHHHHHhCCc--eEE--EEec-CCC--CHHHHHHHHHHHHHcCCC---EEEecCCCHHHHH--HHHHHHHcCCcE
Confidence 55666666767 44 443 3333 332 336677777777777888 8888766543321 222234578999
Q ss_pred EEeccc
Q 017815 127 IQIPTT 132 (365)
Q Consensus 127 i~IPTT 132 (365)
|.+-++
T Consensus 86 v~~~~~ 91 (269)
T cd01391 86 VSLDAT 91 (269)
T ss_pred EEecCC
Confidence 998555
No 315
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=34.52 E-value=1.5e+02 Score=26.31 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=56.4
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
.+.+++...++|++++.++..... +.+.|++.| ++|..+.+... +..+.-.+..+.+....+| +|.+
T Consensus 108 ~~~l~~~~~~~~vl~~~g~~~~~~----l~~~L~~~g--~~v~~~~vY~~---~~~~~~~~~~~~l~~~~~~----~v~f 174 (231)
T PF02602_consen 108 AELLKEQLRGKRVLILRGEGGRPD----LPEKLREAG--IEVTEVIVYET---PPEELSPELKEALDRGEID----AVVF 174 (231)
T ss_dssp HGGHHHCCTTEEEEEEESSSSCHH----HHHHHHHTT--EEEEEEECEEE---EEHHHHHHHHHHHHHTTTS----EEEE
T ss_pred HHHHHhhCCCCeEEEEcCCCccHH----HHHHHHHCC--CeEEEEEEeec---ccccchHHHHHHHHcCCCC----EEEE
Confidence 344444334688999999887443 445677788 77655544433 3456777777777777777 7778
Q ss_pred cCchHhhHHHHHHH---HhhcCCcEEEe
Q 017815 105 GGGVIGDMCGYAAA---SYLRGVSFIQI 129 (365)
Q Consensus 105 GGGsv~D~ak~vA~---~~~~g~p~i~I 129 (365)
-..+....---... .+....++++|
T Consensus 175 tS~~~~~~~~~~~~~~~~~~~~~~~~~i 202 (231)
T PF02602_consen 175 TSPSAVRAFLELLKKNGALLKRVPIVAI 202 (231)
T ss_dssp SSHHHHHHHHHHSSGHHHHHTTSEEEES
T ss_pred CCHHHHHHHHHHhHhhhhhhhCCEEEEE
Confidence 77776554321111 13456777776
No 316
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=34.21 E-value=3.7e+02 Score=25.80 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=28.3
Q ss_pred chhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 017815 248 GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLP 305 (365)
Q Consensus 248 gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp 305 (365)
|.+.+|+|++. . .-.++..-+.+..+.+-..-++.. +...+++.++.+.+|.+
T Consensus 226 ~~g~~H~l~h~--l-~~~~~~~HG~~~ai~lp~vl~~~~--~~~~~~~~~~a~~l~~~ 278 (337)
T cd08177 226 GMGLSHKLGHV--L-GGTFGLPHAETSCIVLPHVLAFNA--PAAPEALARLARALGLG 278 (337)
T ss_pred cHHHHHHhhCc--c-ccCcCCCcHHHHHHHHHHHHHhcC--cCCHHHHHHHHHHhCcc
Confidence 35788888875 3 344566666655544333333322 22345566666666643
No 317
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=34.14 E-value=3.2e+02 Score=23.89 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +++.+ ++.. . +.+...+.++.+...++| .||..+.-.. +.. +......++|
T Consensus 14 ~~~~~~g~~~~~~~~g--~~~~~--~~~~-~--~~~~~~~~~~~~~~~~~d---~iii~~~~~~-~~~--~~~~~~~~ip 80 (264)
T cd06267 14 FAELLRGIEEAAREAG--YSVLL--CNSD-E--DPEKEREALELLLSRRVD---GIILAPSRLD-DEL--LEELAALGIP 80 (264)
T ss_pred HHHHHHHHHHHHHHcC--CEEEE--EcCC-C--CHHHHHHHHHHHHHcCcC---EEEEecCCcc-hHH--HHHHHHcCCC
Confidence 3446677777777777 66543 3322 2 345666777777777888 7766554322 221 2223457999
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
+|.+=+.
T Consensus 81 vv~~~~~ 87 (264)
T cd06267 81 VVLVDRP 87 (264)
T ss_pred EEEeccc
Confidence 9998554
No 318
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=34.02 E-value=4.7e+02 Score=25.85 Aligned_cols=123 Identities=10% Similarity=-0.050 Sum_probs=56.8
Q ss_pred CCHHHHHhcHHHHH-HHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhcccc---------c
Q 017815 175 LPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRA---------T 244 (365)
Q Consensus 175 lP~~~~~sG~~D~l-kha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~---------~ 244 (365)
++++++.+---... ..++ ..+.+++|++.+...+...+.+.+-..+.+........+|+.+...|. .
T Consensus 193 lDP~l~~~~P~~~ta~tg~---DAl~HaiE~y~s~~~np~td~~a~~ai~li~~~l~~a~~~~~d~~AR~~m~~As~laG 269 (395)
T PRK15454 193 LDAALTEGVPSHVTAMTGI---DALTHAIEAYSALNATPFTDSLAIGAIAMIGKSLPKAVGYGHDLAARESMLLASCMAG 269 (395)
T ss_pred EChhhhccCCHHHHHHHHH---HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 45666666555554 3333 566666766554322222333332222222222223333332222221 1
Q ss_pred cCc---chhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 017815 245 LNL---GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLP 305 (365)
Q Consensus 245 l~~---gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp 305 (365)
.++ |....|+|++. . .-.|+..-+.+..+.+--.-++.. +...+++.++.+.+|..
T Consensus 270 ~a~~~~g~g~~Hal~h~--l-g~~~~ipHG~~~aillP~v~~~n~--~~~~~k~~~la~~l~~~ 328 (395)
T PRK15454 270 MAFSSAGLGLCHAMAHQ--P-GAALHIPHGLANAMLLPTVMEFNR--MVCRERFSQIGRALRTK 328 (395)
T ss_pred HHHhcccchHHHhhhhh--h-ccCCCCCcHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHhCCC
Confidence 222 34577777765 2 345666666655554433333332 23345666777777654
No 319
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=33.96 E-value=3.5e+02 Score=24.24 Aligned_cols=77 Identities=10% Similarity=0.145 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch-Hhh-HHHHHHHHhhcC
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IGD-MCGYAAASYLRG 123 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs-v~D-~ak~vA~~~~~g 123 (365)
+..+.+.+.+.+++.| +++.. ... +. +.+.-.+.++.+...++| .||-.++.+ ..+ ...++......+
T Consensus 14 ~~~~~~gi~~~~~~~g--~~~~~--~~~-~~--~~~~~~~~i~~l~~~~vd---gii~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
T cd01541 14 FPSIIRGIESVLSEKG--YSLLL--AST-NN--DPERERKCLENMLSQGID---GLIIEPTKSALPNPNIDLYLKLEKLG 83 (273)
T ss_pred HHHHHHHHHHHHHHcC--CEEEE--EeC-CC--CHHHHHHHHHHHHHcCCC---EEEEeccccccccccHHHHHHHHHCC
Confidence 4446777788888888 66533 222 21 344556667777888888 887766432 111 112222234578
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|+|.+=..
T Consensus 84 ipvV~~~~~ 92 (273)
T cd01541 84 IPYVFINAS 92 (273)
T ss_pred CCEEEEecC
Confidence 999998554
No 320
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=33.92 E-value=2.7e+02 Score=26.65 Aligned_cols=97 Identities=11% Similarity=0.180 Sum_probs=53.8
Q ss_pred chhhhhccCCceEEEEEc-cCchHHHHHHHHHHHhhCCCCceEEEEEeC---CCCCCCCH---HHHHHHHHHHHHcCCCC
Q 017815 25 NCLYYRHVQGKKVLVVTN-NTVAPLYLDKVTDALTRGNPNVSVENVILP---DGENYKNM---DTLMKVFDKAIESRLDR 97 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd-~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~---~~e~~~~~---~~v~~~~~~~~~~~~dr 97 (365)
-+.|+.+ |.++.++.. ++.++...+++.+...+.. + .+.+. +-..||.- .+-.++++++.+. +|
T Consensus 101 ~~~l~a~--GAevi~t~~~~g~~~~a~~~a~el~~~~p---~--~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~-~d- 171 (300)
T COG0031 101 RKLLRAL--GAEVILTPGAPGNMKGAIERAKELAAEIP---G--YAVWLNQFENPANPEAHYETTGPEIWQQTDGK-VD- 171 (300)
T ss_pred HHHHHHc--CCEEEEcCCCCCchHHHHHHHHHHHHhCC---C--ceEchhhcCCCccHHHHHhhhHHHHHHHhCCC-CC-
Confidence 4566666 567777776 4435556777666665542 1 11222 12223322 3455666665433 44
Q ss_pred cceEEEec-CchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALG-GGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiG-GGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
-+|.++| ||++.=+++++-..+ .++.++.|=..
T Consensus 172 -~fVagvGTGGTitGvar~Lk~~~-p~i~iv~vdP~ 205 (300)
T COG0031 172 -AFVAGVGTGGTITGVARYLKERN-PNVRIVAVDPE 205 (300)
T ss_pred -EEEEeCCcchhHHHHHHHHHhhC-CCcEEEEECCC
Confidence 4777888 677778888774322 34777776544
No 321
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=33.90 E-value=4.7e+02 Score=26.01 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=31.5
Q ss_pred chhHHHHhhhccCCCCCCc------------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 017815 248 GHTFGHAIETGFGYGQWLH------------GEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLP 305 (365)
Q Consensus 248 gH~~~Hale~~~~~~~~~H------------G~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp 305 (365)
|..++|+|++.++ ...| |..-+.++.+.+-...++. .+...+++.++.+.+|..
T Consensus 275 g~~~~Hai~~~l~--~~~~~~~~~~~~~~~~~ipHG~~~ai~lp~vl~~n--~~~~~~k~~~~a~~lg~~ 340 (414)
T cd08190 275 GVHLCHGMSYPIA--GLVKDYKAPDYPVDHPLVPHGLSVVVTAPAVFRFT--APACPERHLEAAEILGAD 340 (414)
T ss_pred chhhhhHhccHhh--cCcCccccccccccCCCCChHHHHHHHHHHHHHhh--hhhCHHHHHHHHHHhCCC
Confidence 4578899988764 3333 3555655555443333433 233456777777777775
No 322
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.79 E-value=3e+02 Score=24.34 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.++ .. +. +. ...+.++.+...++| .||..+.-..-+..+ .....|+
T Consensus 13 ~~~~~~~~i~~~~~~~g--~~~~~~--~~-~~--~~-~~~~~i~~~~~~~vd---giii~~~~~~~~~~~---~~~~~~i 78 (266)
T cd06278 13 FYSELLEALSRALQARG--YQPLLI--NT-DD--DE-DLDAALRQLLQYRVD---GVIVTSGTLSSELAE---ECRRNGI 78 (266)
T ss_pred hHHHHHHHHHHHHHHCC--CeEEEE--cC-CC--CH-HHHHHHHHHHHcCCC---EEEEecCCCCHHHHH---HHhhcCC
Confidence 34446777888888888 665432 21 11 12 445666777778888 788765432222222 2234699
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-..
T Consensus 79 pvV~~~~~ 86 (266)
T cd06278 79 PVVLINRY 86 (266)
T ss_pred CEEEECCc
Confidence 99998554
No 323
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=33.61 E-value=2.4e+02 Score=24.06 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=48.5
Q ss_pred hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHH-HHHcCCCCcceEEEe
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK-AIESRLDRRCTFVAL 104 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~-~~~~~~dr~~~IIai 104 (365)
+.|++++ -+.++-+.+...... .+.+.+ ..+ +++ +. .-.| ...--.++- .+..+ +--+++.-
T Consensus 8 ~~L~~~G-v~~vFgipG~~~~~l-~~al~~---~~~--i~~--v~-~rhE-----~~A~~mA~gyar~tg--~~~v~~~t 70 (164)
T cd07039 8 ETLENWG-VKRVYGIPGDSINGL-MDALRR---EGK--IEF--IQ-VRHE-----EAAAFAASAEAKLTG--KLGVCLGS 70 (164)
T ss_pred HHHHHCC-CCEEEEcCCCchHHH-HHHHhh---cCC--CeE--EE-eCCH-----HHHHHHHHHHHHHhC--CCEEEEEC
Confidence 4556653 578888888876543 333321 244 443 22 2222 222222222 22222 22265666
Q ss_pred cCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 105 GGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.|.-.....-.++.+|..++|++.|...
T Consensus 71 ~GpG~~n~~~~l~~A~~~~~Pvl~I~g~ 98 (164)
T cd07039 71 SGPGAIHLLNGLYDAKRDRAPVLAIAGQ 98 (164)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5555666666677889999999999654
No 324
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=33.48 E-value=2.7e+02 Score=27.73 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=25.2
Q ss_pred HHHHHHHHH-cCCCCcceEEEecCchHhhHHHHHH-HHhhcCCcEEEeccc
Q 017815 84 MKVFDKAIE-SRLDRRCTFVALGGGVIGDMCGYAA-ASYLRGVSFIQIPTT 132 (365)
Q Consensus 84 ~~~~~~~~~-~~~dr~~~IIaiGGGsv~D~ak~vA-~~~~~g~p~i~IPTT 132 (365)
.++.+++.+ .+-.-+.+|+++|||+.+=-. .. ......+++|.|=..
T Consensus 213 ~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi--~~~f~~~~~v~iigVE~~ 261 (397)
T PRK04346 213 EEAKAQILEKEGRLPDAVVACVGGGSNAIGI--FHPFIDDESVRLIGVEAA 261 (397)
T ss_pred HHHHHHHHHhhCCCCCEEEEecCccHhHHHH--HHHHhhCCCCeEEEEecC
Confidence 366666643 232235689999999864322 11 111334667776443
No 325
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=33.42 E-value=4.4e+02 Score=25.27 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
.....++++++.+.+.+-+.+|+++|+|..+
T Consensus 172 ~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~ 202 (337)
T TIGR01274 172 VGFAFEVREQEGELGFKFDYVVVCSVTGSTQ 202 (337)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCchHhH
Confidence 4456677777654433345688888888763
No 326
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=33.33 E-value=3e+02 Score=25.57 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=48.6
Q ss_pred ccceeeecccchhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES 93 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~ 93 (365)
|+....+....+++.+.+ .+++.++++...+.. ..+.+.+.++ | ..+....++.+. .+....++.+++.
T Consensus 116 ~~~~~~~~~~~~~l~~~g-~~~v~il~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~-----~d~~~~i~~l~~~ 185 (333)
T cd06332 116 WQNDQVHEAMGKYAADKG-YKKVVIIAPDYAAGKDAVAGFKRTFK--G--EVVEEVYTPLGQ-----LDFSAELAQIRAA 185 (333)
T ss_pred CChHHhHHHHHHHHHHhC-CceEEEEecCcchhHHHHHHHHHhhc--E--EEeeEEecCCCC-----cchHHHHHHHHhc
Confidence 333333343456666554 688998887665432 4455555554 3 111111222221 2344566667777
Q ss_pred CCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 94 RLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 94 ~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
++| .|+..+.+. +..+++-.....|+
T Consensus 186 ~~d---~i~~~~~~~--~~~~~~~~~~~~g~ 211 (333)
T cd06332 186 KPD---AVFVFLPGG--MAVNFVKQYDQAGL 211 (333)
T ss_pred CCC---EEEEecccc--hHHHHHHHHHHcCc
Confidence 777 888776532 34455443334454
No 327
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=33.27 E-value=1.2e+02 Score=19.16 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHh
Q 017815 293 KRVHNILQQAKLPTAPPDTMTVEMFKSIMAV 323 (365)
Q Consensus 293 ~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~ 323 (365)
+++.++|+..|++..-.. -+.+++++.++.
T Consensus 7 ~~L~~wL~~~gi~~~~~~-~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-CCHHHHHHHHHH
Confidence 578999999999986543 478888876653
No 328
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=33.16 E-value=4.1e+02 Score=24.87 Aligned_cols=85 Identities=16% Similarity=0.059 Sum_probs=54.5
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+...-.+++.+.+.+.| ++-. ++. ..|| ..=|.++-.++++.+.+.-..|--+|+++|. ++-|+.+.+..+..
T Consensus 17 ~iD~~~l~~l~~~l~~~G--v~gi-~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~ 92 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYG--AAAL-FAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEK 92 (289)
T ss_pred CcCHHHHHHHHHHHHHcC--CCEE-EECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHH
Confidence 333334566666666777 5432 222 2355 3567777788888777754344458999987 88888877766666
Q ss_pred cCCcEEEeccc
Q 017815 122 RGVSFIQIPTT 132 (365)
Q Consensus 122 ~g~p~i~IPTT 132 (365)
.|...+.+.+.
T Consensus 93 ~Gad~v~~~pP 103 (289)
T cd00951 93 AGADGILLLPP 103 (289)
T ss_pred hCCCEEEECCC
Confidence 78887776544
No 329
>PRK07476 eutB threonine dehydratase; Provisional
Probab=33.11 E-value=3.2e+02 Score=26.04 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchH
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVI 109 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv 109 (365)
...++++++. +-+.+|+++|||..
T Consensus 157 ~~~Ei~~Q~~----~~d~iv~~vG~GG~ 180 (322)
T PRK07476 157 IGLEILEALP----DVATVLVPLSGGGL 180 (322)
T ss_pred HHHHHHHhCc----CCCEEEEEcChHHH
Confidence 3444554432 22457888887754
No 330
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=32.94 E-value=2.6e+02 Score=24.41 Aligned_cols=90 Identities=7% Similarity=-0.039 Sum_probs=47.9
Q ss_pred eecccchhhhhccCCceEEEEEccCc---hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCC
Q 017815 20 LLISNNCLYYRHVQGKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLD 96 (365)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~livtd~~~---~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~d 96 (365)
.+.-..+++.+.+ .+|+.++.+..- .....+-+.+.+++.| .+++... .. ...+.+...+.+..+.+.+.
T Consensus 105 ~~~~~~~~l~~~g-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~---~~~~~~~~~~~~~~~l~~~~- 177 (264)
T cd01537 105 AGYLAGEHLAEKG-HRRIALLAGPLGSSTARERVAGFKDALKEAG-PIEIVLV-QE---GDWDAEKGYQAAEELLTAHP- 177 (264)
T ss_pred HHHHHHHHHHHhc-CCcEEEEECCCCCCcHHHHHHHHHHHHHHcC-CcChhhh-cc---CCCCHHHHHHHHHHHHhcCC-
Confidence 3333456666553 678888877533 2234555666666544 1221111 11 12355566666666665552
Q ss_pred CcceEEEecCchHhhHHHHH
Q 017815 97 RRCTFVALGGGVIGDMCGYA 116 (365)
Q Consensus 97 r~~~IIaiGGGsv~D~ak~v 116 (365)
+.+.|++.+......+.+.+
T Consensus 178 ~~~~i~~~~~~~a~~~~~~~ 197 (264)
T cd01537 178 DPTAIFAANDDMALGALRAL 197 (264)
T ss_pred CCCEEEEcCcHHHHHHHHHH
Confidence 23488888877666555544
No 331
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=32.83 E-value=2.7e+02 Score=23.55 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=44.8
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
-.+.+.+. .++++++-|....+.+.+.+.+.-...| +++.++ ++++.++.+.+...+...++|=+
T Consensus 17 ~~W~~~~~-~~~IvVvdD~~A~D~~~k~~l~ma~P~g--vk~~i~------------sve~a~~~l~~~~~~~~~v~il~ 81 (151)
T cd00001 17 TTWTKELN-ANRIIVVNDEVANDELRKTLLKLAAPPG--VKLRIF------------TVEKAIEAINSPKYDKQRVFLLF 81 (151)
T ss_pred hhhhcccC-CCEEEEEcccccCCHHHHHHHHhhCCCC--CeEEEE------------EHHHHHHHHhCcCCCCceEEEEE
Confidence 44455553 6677777777665557776666555566 665432 34555666665444444466666
Q ss_pred cCchHhhHHHHH
Q 017815 105 GGGVIGDMCGYA 116 (365)
Q Consensus 105 GGGsv~D~ak~v 116 (365)
+ ++-|+.+.+
T Consensus 82 k--~~~~~~~l~ 91 (151)
T cd00001 82 K--NPQDVLRLV 91 (151)
T ss_pred C--CHHHHHHHH
Confidence 4 788887765
No 332
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=32.68 E-value=3.6e+02 Score=25.15 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhc
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 122 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~ 122 (365)
+.....++..+.+-++| ++- +++. ..||. .=|.++-.++++.+.+.-..|--+++++|+.++-|+...+-.+...
T Consensus 19 id~~~~~~~i~~l~~~G--v~g-l~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~ 95 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAG--VDG-LVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDA 95 (289)
T ss_dssp B-HHHHHHHHHHHHHTT--SSE-EEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcC--CCE-EEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhc
Confidence 33334555666666777 553 2222 23553 5567778888888777544555699999999998888887666677
Q ss_pred CCcEEEe
Q 017815 123 GVSFIQI 129 (365)
Q Consensus 123 g~p~i~I 129 (365)
|..-+.|
T Consensus 96 Gad~v~v 102 (289)
T PF00701_consen 96 GADAVLV 102 (289)
T ss_dssp T-SEEEE
T ss_pred CceEEEE
Confidence 8776654
No 333
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=32.60 E-value=2.3e+02 Score=27.16 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI 109 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv 109 (365)
+.....+.+.|++.| .++..+. +++ +.+.+.+.++.+.+.++| +||.-||=|+
T Consensus 178 D~~~~~l~~~L~~~G--~~v~~~~iv~D-----d~~~I~~ai~~~~~~g~D---lIItTGGtsv 231 (312)
T cd03522 178 DKFGPVLRARLAALG--VELVEQVIVPH-----DEAAIAAAIAEALEAGAE---LLILTGGASV 231 (312)
T ss_pred EhHHHHHHHHHHHCC--CEEEEEEEcCC-----CHHHHHHHHHHHhcCCCC---EEEEeCCccc
Confidence 446777888888888 6654332 232 556777777776666677 8888776554
No 334
>PRK08198 threonine dehydratase; Provisional
Probab=32.59 E-value=4.3e+02 Score=26.04 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 96 DRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 96 dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
+-+.+|+.+|||..+= +++++.. +...+++|.|-+.
T Consensus 170 ~~d~vv~~vG~GG~~~Gi~~~~k~-~~p~~kiigVe~~ 206 (404)
T PRK08198 170 DVDTVVVPIGGGGLISGVATAVKA-LRPEVRVIGVQAE 206 (404)
T ss_pred CCCEEEEEeCHhHHHHHHHHHHHH-hCCCCEEEEEEeC
Confidence 3356899999988764 4444432 2345777777554
No 335
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=32.57 E-value=3.5e+02 Score=23.88 Aligned_cols=70 Identities=9% Similarity=0.122 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+.+.+.+.+.+.| +++.+ ++. .. +.+...+.++.+...++| .||..+.-..-+..+ .....++|+
T Consensus 15 ~~~~~gi~~~~~~~g--~~~~~--~~~-~~--~~~~~~~~i~~l~~~~~d---gii~~~~~~~~~~~~---~~~~~~ipv 81 (259)
T cd01542 15 SRTVKGILAALYENG--YQMLL--MNT-NF--SIEKEIEALELLARQKVD---GIILLATTITDEHRE---AIKKLNVPV 81 (259)
T ss_pred HHHHHHHHHHHHHCC--CEEEE--EeC-CC--CHHHHHHHHHHHHhcCCC---EEEEeCCCCCHHHHH---HHhcCCCCE
Confidence 446777888888888 66533 222 22 345556677777788888 888886543222222 223458999
Q ss_pred EEe
Q 017815 127 IQI 129 (365)
Q Consensus 127 i~I 129 (365)
+.+
T Consensus 82 v~~ 84 (259)
T cd01542 82 VVV 84 (259)
T ss_pred EEE
Confidence 988
No 336
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=32.51 E-value=3.6e+02 Score=23.98 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+.+.| +++. +++. +. +.+...+.++.+...++| .||-.+....-...+.. ....++
T Consensus 13 ~~~~~~~gi~~~~~~~g--~~~~--~~~~-~~--~~~~~~~~i~~l~~~~vd---giii~~~~~~~~~~~~l--~~~~~i 80 (269)
T cd06275 13 FFAEVVRGVEQYCYRQG--YNLI--LCNT-EG--DPERQRSYLRMLAQKRVD---GLLVMCSEYDQPLLAML--ERYRHI 80 (269)
T ss_pred hHHHHHHHHHHHHHHcC--CEEE--EEeC-CC--ChHHHHHHHHHHHHcCCC---EEEEecCCCChHHHHHH--HhcCCC
Confidence 44556777888888888 6653 2322 22 345666777778888888 88887754322221222 123589
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|++.+-..
T Consensus 81 pvV~i~~~ 88 (269)
T cd06275 81 PMVVMDWG 88 (269)
T ss_pred CEEEEecc
Confidence 99998665
No 337
>PRK03670 competence damage-inducible protein A; Provisional
Probab=32.47 E-value=2.8e+02 Score=25.75 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC--chHhhHHHHHHHH
Q 017815 48 LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG--GVIGDMCGYAAAS 119 (365)
Q Consensus 48 ~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG--Gsv~D~ak~vA~~ 119 (365)
.-...+.+.|.+.| +++... ++++ +.+.+.+.++.+.+.++| +||.-|| -+.=|+++-+.+.
T Consensus 20 tN~~~la~~L~~~G--~~v~~~~iV~D-----d~~~I~~~l~~a~~~~~D---lVIttGGlGpt~dD~T~eava~ 84 (252)
T PRK03670 20 SNSAFIAQKLTEKG--YWVRRITTVGD-----DVEEIKSVVLEILSRKPE---VLVISGGLGPTHDDVTMLAVAE 84 (252)
T ss_pred hhHHHHHHHHHHCC--CEEEEEEEcCC-----CHHHHHHHHHHHhhCCCC---EEEECCCccCCCCCchHHHHHH
Confidence 34566777788888 766533 3333 445566666555443445 9999988 4455777765443
No 338
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=32.12 E-value=1.3e+02 Score=22.38 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=26.4
Q ss_pred eEEEEEccCchHH-H-HHHHHHHHhhCCCCceEEEEE
Q 017815 36 KVLVVTNNTVAPL-Y-LDKVTDALTRGNPNVSVENVI 70 (365)
Q Consensus 36 ~~livtd~~~~~~-~-~~~v~~~L~~~g~~i~v~~~~ 70 (365)
|++++++.++... . .+++++.+++.| +++....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~g--i~~~~~~ 35 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELG--IEVEVSA 35 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTT--ECEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhcc--CceEEEE
Confidence 6899999998765 4 499999999999 7765443
No 339
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.08 E-value=4.1e+02 Score=24.54 Aligned_cols=75 Identities=8% Similarity=0.010 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc--CCCCcceEEEecCchHhhHHHHHHHHhhcC
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES--RLDRRCTFVALGGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~--~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g 123 (365)
+..+.+.+.+.+++.| +++.+ ... ..+.+.-.+.++.+... ++| .||-.+.... ..+.+..+...|
T Consensus 15 ~~~~~~gi~~~~~~~g--~~v~~--~~~---~~~~~~~~~~i~~~~~~~~~vd---giIi~~~~~~--~~~~~~~~~~~g 82 (305)
T cd06324 15 WNSVARFMQAAADDLG--IELEV--LYA---ERDRFLMLQQARTILQRPDKPD---ALIFTNEKSV--APELLRLAEGAG 82 (305)
T ss_pred HHHHHHHHHHHHHhcC--CeEEE--EeC---CCCHHHHHHHHHHHHHhccCCC---EEEEcCCccc--hHHHHHHHHhCC
Confidence 4446677777788888 66533 222 12455566777778888 888 7776554321 223333334579
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|+|.+=..
T Consensus 83 iPvV~~~~~ 91 (305)
T cd06324 83 VKLFLVNSG 91 (305)
T ss_pred CeEEEEecC
Confidence 999998544
No 340
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=31.84 E-value=2.6e+02 Score=24.81 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=46.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.++++++.....+.. .+.|.+.| +++ +...++. -++.++++.+++.++. -|.-.|||.+...
T Consensus 94 ~~~~v~t~~~~~~~~----~~~l~~~~--~~v--~~~~~~~-----~dl~~~l~~L~~~g~~---~vlveGG~~l~~~-- 155 (217)
T PRK05625 94 AKTIVAVSEAAPSEK----VEELEKKG--AEV--IVAGGER-----VDLPDLLEDLYERGIK---RLMVEGGGTLIWS-- 155 (217)
T ss_pred CCEEEEEcCCCCHHH----HHHHHHCC--CEE--EEeCCCC-----cCHHHHHHHHHHCCCC---EEEEecCHHHHHH--
Confidence 567777765443322 24466666 554 3332211 2356677777888887 6777899886543
Q ss_pred HHHHHhhcCCcEEEecccc
Q 017815 115 YAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTTl 133 (365)
|+.+-+--.+-+...|..+
T Consensus 156 fl~~~LvDel~l~i~P~il 174 (217)
T PRK05625 156 MFKEGLVDEVRVTVGPKII 174 (217)
T ss_pred HHHCCCCcEEEEEEcCeee
Confidence 2333233345666777775
No 341
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=31.74 E-value=1.9e+02 Score=30.18 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=41.5
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHH--HHHHHHHcCCCCcceEEEec
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK--VFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~--~~~~~~~~~~dr~~~IIaiG 105 (365)
.+.|+||.| +.+...+.+.+.|.+.| +++.+.. . +++++++ ++..+|.-.+| ++|||-
T Consensus 445 ~~eRvLVTt---LTKkmAEdLT~Yl~e~g--ikv~YlH-S------didTlER~eIirdLR~G~~D---vLVGIN 504 (663)
T COG0556 445 KNERVLVTT---LTKKMAEDLTEYLKELG--IKVRYLH-S------DIDTLERVEIIRDLRLGEFD---VLVGIN 504 (663)
T ss_pred cCCeEEEEe---ehHHHHHHHHHHHHhcC--ceEEeee-c------cchHHHHHHHHHHHhcCCcc---EEEeeh
Confidence 367888875 56678999999999999 8876542 2 3445543 56666766667 999983
No 342
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=31.58 E-value=1.4e+02 Score=26.79 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=60.8
Q ss_pred cceecccccccccceeeeccc------------chhhhhccCCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEE
Q 017815 4 KALLYKDRFFGNSDTLLLISN------------NCLYYRHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENV 69 (365)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~~~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~ 69 (365)
.+++-.++|+.-.+-.+|+-. .++++++. .+++.+..|+.+.+. +..++.+.|++.+ ++....
T Consensus 87 ~~vlcdDg~iRDl~~~~gkyk~~E~t~~Al~lil~~lk~~~-~k~vi~L~d~~vs~SGel~~~i~~~mK~~~--I~g~~~ 163 (211)
T COG2454 87 EAVLCDDGVIRDLRGVQGKYKINEKTDKALDLLLEFLKDVE-PKSVIFLFDAPVSKSGELAGRIEEKMKSLG--IPGEAS 163 (211)
T ss_pred cEEEecCchhhhhhhhccchhhhhHHHHHHHHHHHHHHHcC-CceEEEEeCCCCCccHHHHHHHHHHHHhcC--CCceeE
Confidence 455666777766665555533 23444443 688999999888554 7888999998887 665544
Q ss_pred EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHH
Q 017815 70 ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAA 117 (365)
Q Consensus 70 ~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA 117 (365)
.++ +++++-. ++ -+|+-+.+.++|-+|.+-
T Consensus 164 lvk----~~D~eLk--------~~------e~VaTsD~~IIdsv~~vV 193 (211)
T COG2454 164 LVK----NADFELK--------EL------EVVATSDSGIIDSVKRVV 193 (211)
T ss_pred ecc----CcCHHHH--------hc------CceeecCeeeeeehhHHH
Confidence 433 3343322 22 278888888999888763
No 343
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=31.05 E-value=58 Score=29.64 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCc-hHhhHHHHH
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGG-VIGDMCGYA 116 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGG-sv~D~ak~v 116 (365)
....++.+++++.| -|+.+++.+||- ...|.++.+
T Consensus 170 ~~~~~viE~L~eeG-iRd~v~v~vGGApvtq~~a~~i 205 (227)
T COG5012 170 IGMKDVIELLKEEG-IRDKVIVMVGGAPVTQDWADKI 205 (227)
T ss_pred HHHHHHHHHHHHcC-CccCeEEeecCccccHHHHHHh
Confidence 44567888888888 468888888888 677777766
No 344
>PLN02384 ribose-5-phosphate isomerase
Probab=30.85 E-value=71 Score=29.91 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=26.0
Q ss_pred cceEEEecCchHhhHH-HHHHHHhhcC-Cc-EEEeccccc
Q 017815 98 RCTFVALGGGVIGDMC-GYAAASYLRG-VS-FIQIPTTVM 134 (365)
Q Consensus 98 ~~~IIaiGGGsv~D~a-k~vA~~~~~g-~p-~i~IPTTl~ 134 (365)
+..+||+|.||+.-.. +.++.....+ +. +..|||+..
T Consensus 49 ~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~ 88 (264)
T PLN02384 49 SGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKK 88 (264)
T ss_pred CCCEEEecchHHHHHHHHHHHHhhhhccccceEEEcCcHH
Confidence 4589999999987744 6665444333 44 888999963
No 345
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=30.81 E-value=2.8e+02 Score=27.59 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=16.9
Q ss_pred ehhhhCCCCHHHHHhcHHHHH
Q 017815 168 DTDTLNTLPDRELASGLAEVI 188 (365)
Q Consensus 168 D~~l~~tlP~~~~~sG~~D~l 188 (365)
||+++.|=|-.--.++..|++
T Consensus 192 d~~~IASGPTv~D~tt~~DAl 212 (422)
T COG2379 192 DPSVIASGPTVPDPTTREDAL 212 (422)
T ss_pred CHhhcccCCCCCCCCchHHHH
Confidence 788888877777777888887
No 346
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=30.74 E-value=1.7e+02 Score=24.50 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=45.6
Q ss_pred EEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH-H----HHHHHHHHcCCCCcceEEEecCchHh-
Q 017815 37 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL-M----KVFDKAIESRLDRRCTFVALGGGVIG- 110 (365)
Q Consensus 37 ~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v-~----~~~~~~~~~~~dr~~~IIaiGGGsv~- 110 (365)
+.|+..++....-...+.+.|+.+| +++.++....+.+..+-..+ . .-.+......+| .|+-.||...-
T Consensus 2 v~il~~~gf~~~e~~~~~~~l~~a~--~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D---~lvvpGG~~~~~ 76 (165)
T cd03134 2 VAILAADGFEDVELTYPLYRLREAG--AEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYD---ALVIPGGTNPDK 76 (165)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHCC--CEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCC---EEEECCCCChhh
Confidence 4455555554443444455677777 77655432212222221111 0 001111111234 88877774322
Q ss_pred -----hHHHHHHHHhhcCCcEEEecccc
Q 017815 111 -----DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 111 -----D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
++-.++...+.++.+++.|.+..
T Consensus 77 ~~~~~~~~~~l~~~~~~~~~i~~ic~G~ 104 (165)
T cd03134 77 LRRDPDAVAFVRAFAEAGKPVAAICHGP 104 (165)
T ss_pred hccCHHHHHHHHHHHHcCCeEEEEchHH
Confidence 23445555667889999998884
No 347
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=30.58 E-value=3.2e+02 Score=24.30 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=46.3
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.+++|++.....+.. .+.|.+.| +++ ....++ . -++.++++.+++.|+. -|.--|||++...-
T Consensus 90 ~~~~v~t~~~~~~~~----~~~l~~~g--v~v--i~~~~~----~-~dl~~~l~~L~~~g~~---~vlveGG~~l~~~f- 152 (210)
T TIGR01508 90 AKTIIATSEDEPEEK----VEELEDKG--VEV--VKFGEG----R-VDLKKLLDILYDKGVR---RLMVEGGGTLIWSL- 152 (210)
T ss_pred CCEEEEEcCCCCHHH----HHHHHHCC--CEE--EEeCCC----C-cCHHHHHHHHHHCCCC---EEEEeeCHHHHHHH-
Confidence 467888865543322 23466677 554 333221 1 1355677777888888 78888999875542
Q ss_pred HHHHHhhcCCcEEEecccc
Q 017815 115 YAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTTl 133 (365)
+++.+--.+-+...|.-+
T Consensus 153 -l~~~LvDel~l~i~P~il 170 (210)
T TIGR01508 153 -FKENLVDEISVYIAPKIF 170 (210)
T ss_pred -HHCCCCcEEEEEEcCEEE
Confidence 433333335566666654
No 348
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=30.51 E-value=4.4e+02 Score=24.39 Aligned_cols=74 Identities=9% Similarity=0.057 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+.+.| +++.+ +.. .. +.+...+.++.+.+.++| .||-.+....-...... ....++
T Consensus 70 ~~~~~~~gi~~~~~~~g--~~~~~--~~~-~~--~~~~~~~~~~~l~~~~vd---GiI~~~~~~~~~~~~~l--~~~~~i 137 (327)
T PRK10423 70 FYSELVRGVERSCFERG--YSLVL--CNT-EG--DEQRMNRNLETLMQKRVD---GLLLLCTETHQPSREIM--QRYPSV 137 (327)
T ss_pred cHHHHHHHHHHHHHHcC--CEEEE--EeC-CC--CHHHHHHHHHHHHHcCCC---EEEEeCCCcchhhHHHH--HhcCCC
Confidence 34457777888888888 66533 222 11 334555677777788888 88877754322222222 112489
Q ss_pred cEEEec
Q 017815 125 SFIQIP 130 (365)
Q Consensus 125 p~i~IP 130 (365)
|+|.+=
T Consensus 138 PvV~i~ 143 (327)
T PRK10423 138 PTVMMD 143 (327)
T ss_pred CEEEEC
Confidence 999883
No 349
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=30.50 E-value=4.7e+02 Score=24.70 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=55.7
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
+++.+|+-.+......+.+.+.|++..+ +.. ..+.+.-++.|.+.=+++.+.+ ..+| ++|-|||-..-.+.|
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~--~~~-~~~~nTIC~aT~~RQ~a~~~La--~~vD---~miVIGg~~SsNT~k 226 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFP--ELE-GPVFNTICYATQNRQEAARELA--KEVD---AMIVIGGKNSSNTRK 226 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHST--CEE--SCC-S--CHHHHHHHHHHHHH--CCSS---EEEEES-TT-HHHHH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCc--ccc-CCCCCCCCHhHHHHHHHHHHHH--hhCC---EEEEecCCCCccHHH
Confidence 4677777666555567777777776542 221 1245566666666644444432 2466 999999999999999
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+-.+-..+.|-+.|=|.
T Consensus 227 L~eia~~~~~~t~~Ie~~ 244 (281)
T PF02401_consen 227 LAEIAKEHGKPTYHIETA 244 (281)
T ss_dssp HHHHHHHCTTCEEEESSG
T ss_pred HHHHHHHhCCCEEEeCCc
Confidence 887666678888888776
No 350
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=30.43 E-value=4.3e+02 Score=24.74 Aligned_cols=45 Identities=4% Similarity=0.024 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHh-hHHHHHHHHhhcCCcEEEeccc
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIG-DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~-D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.++++++. .+-+.+|+.+|+|..+ =++++... +..++++|.|-+.
T Consensus 154 ~Ei~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~~~-~~~~~~vi~Ve~~ 199 (298)
T TIGR01139 154 PEIWRDTD---GKLDAFVAGVGTGGTITGVGEVLKE-QKPNIKIVAVEPA 199 (298)
T ss_pred HHHHHHhC---CCCCEEEEecchhHhHHHHHHHHHh-cCCCCEEEEEecC
Confidence 45555442 1234689999988765 33333322 2357788887665
No 351
>PRK13566 anthranilate synthase; Provisional
Probab=30.36 E-value=2.8e+02 Score=29.97 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=48.6
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhh-
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGD- 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D- 111 (365)
++|++||-... .+...+.+.|++.| .++..+..+ . +.+.+. ...+| .||-.|| |+.-|
T Consensus 526 g~~IlvID~~d---sf~~~l~~~Lr~~G--~~v~vv~~~--~---~~~~~~-------~~~~D---gVVLsgGpgsp~d~ 585 (720)
T PRK13566 526 GKRVLLVDHED---SFVHTLANYFRQTG--AEVTTVRYG--F---AEEMLD-------RVNPD---LVVLSPGPGRPSDF 585 (720)
T ss_pred CCEEEEEECCC---chHHHHHHHHHHCC--CEEEEEECC--C---ChhHhh-------hcCCC---EEEECCCCCChhhC
Confidence 67777776653 34567777788888 666544322 1 122221 23455 7665555 56544
Q ss_pred -HHHHHHHHhhcCCcEEEeccccc
Q 017815 112 -MCGYAAASYLRGVSFIQIPTTVM 134 (365)
Q Consensus 112 -~ak~vA~~~~~g~p~i~IPTTl~ 134 (365)
+..++..++..++|+.-|+-...
T Consensus 586 ~~~~lI~~a~~~~iPILGIClG~Q 609 (720)
T PRK13566 586 DCKATIDAALARNLPIFGVCLGLQ 609 (720)
T ss_pred CcHHHHHHHHHCCCcEEEEehhHH
Confidence 45555555678999999988864
No 352
>PRK11761 cysM cysteine synthase B; Provisional
Probab=30.32 E-value=2.7e+02 Score=26.24 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHh-hHHHHHHHHhhcCCcEEEeccc
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIG-DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~-D~ak~vA~~~~~g~p~i~IPTT 132 (365)
..++++++.. .+ +.+|+.+|||..+ =+++++.. +...++++.|=+.
T Consensus 157 ~~Ei~eq~~~-~~--d~iv~~vG~Gg~~~Gi~~~lk~-~~~~~kvigVep~ 203 (296)
T PRK11761 157 GPEIWRQTEG-RI--THFVSSMGTTGTIMGVSRYLKE-QNPAVQIVGLQPE 203 (296)
T ss_pred HHHHHHhcCC-CC--CEEEecCCcHHHHHHHHHHHHH-hCCCCEEEEEecC
Confidence 3455555421 23 3588889988765 55555543 3456788887664
No 353
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.28 E-value=3.9e+02 Score=23.73 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.++ ... . +.+.-.+.++.+...++| .||....-.--+. +......++
T Consensus 13 ~~~~~~~gi~~~~~~~g--~~~~~~--~~~-~--~~~~~~~~i~~l~~~~~d---giii~~~~~~~~~---~~~~~~~~i 79 (270)
T cd06296 13 WASEVLRGVEEAAAAAG--YDVVLS--ESG-R--RTSPERQWVERLSARRTD---GVILVTPELTSAQ---RAALRRTGI 79 (270)
T ss_pred cHHHHHHHHHHHHHHcC--CeEEEe--cCC-C--chHHHHHHHHHHHHcCCC---EEEEecCCCChHH---HHHHhcCCC
Confidence 44557777888888888 665432 221 1 224555677777888888 8877654322122 222335789
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+=..
T Consensus 80 pvV~i~~~ 87 (270)
T cd06296 80 PFVVVDPA 87 (270)
T ss_pred CEEEEecc
Confidence 99998554
No 354
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.07 E-value=4.2e+02 Score=23.94 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=50.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-----CCCHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-----YKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-----~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
+.++-+..++.+.-...+.+ ++... .+.++.++.|-. ..+++.+.++.+...+.+.+ +.|.+.||.
T Consensus 106 g~k~GlalnP~Tp~~~i~~~---l~~~D---~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~---~~I~vdGGI 176 (220)
T PRK08883 106 GCQAGVVLNPATPLHHLEYI---MDKVD---LILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRD---IRLEIDGGV 176 (220)
T ss_pred CCcEEEEeCCCCCHHHHHHH---HHhCC---eEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCC---eeEEEECCC
Confidence 67888888887754444444 33322 133344433322 13455666666665555655 778778888
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
--+..+.+ ...|...+.+-+.
T Consensus 177 ~~eni~~l---~~aGAd~vVvGSa 197 (220)
T PRK08883 177 KVDNIREI---AEAGADMFVAGSA 197 (220)
T ss_pred CHHHHHHH---HHcCCCEEEEeHH
Confidence 77777654 3457776666443
No 355
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=30.07 E-value=46 Score=28.12 Aligned_cols=77 Identities=6% Similarity=0.084 Sum_probs=37.3
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
..++=+|.-..+.++..+.+.+.+.| -+ .|- ..+ .+++..+...+ ..||+.|||++++-.-.
T Consensus 18 ~~fiD~D~~i~~~~g~si~~i~~~~G--~~----~fr-------~~E-~~~l~~l~~~~----~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 18 RPFIDLDDEIEERTGMSISEIFAEEG--EE----AFR-------ELE-SEALRELLKEN----NCVIACGGGIVLKEENR 79 (158)
T ss_dssp SEEEEHHHHHHHHHTSHHHHHHHHHH--HH----HHH-------HHH-HHHHHHHHCSS----SEEEEE-TTGGGSHHHH
T ss_pred CCccccCHHHHHHhCCcHHHHHHcCC--hH----HHH-------HHH-HHHHHHHhccC----cEEEeCCCCCcCcHHHH
Confidence 45666666655556656666555444 11 010 011 12223333322 39999999999987633
Q ss_pred HHHHhhcCCcEEEeccc
Q 017815 116 AAASYLRGVSFIQIPTT 132 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTT 132 (365)
- .....-++|.+-..
T Consensus 80 ~--~L~~~g~vI~L~~~ 94 (158)
T PF01202_consen 80 E--LLKENGLVIYLDAD 94 (158)
T ss_dssp H--HHHHHSEEEEEE--
T ss_pred H--HHHhCCEEEEEeCC
Confidence 2 22224445555333
No 356
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=29.96 E-value=4e+02 Score=23.73 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +.+.++ . .. .+.+.-.+.++.+...++| .||..+....-+ . +......|+
T Consensus 13 ~~~~~~~g~~~~a~~~g--~~~~~~--~-~~--~~~~~~~~~i~~~~~~~vd---gii~~~~~~~~~--~-~~~~~~~~i 79 (268)
T cd06270 13 FFGPLLSGVESVARKAG--KHLIIT--A-GH--HSAEKEREAIEFLLERRCD---ALILHSKALSDD--E-LIELAAQVP 79 (268)
T ss_pred chHHHHHHHHHHHHHCC--CEEEEE--e-CC--CchHHHHHHHHHHHHcCCC---EEEEecCCCCHH--H-HHHHhhCCC
Confidence 34446777778888888 665432 2 11 2345556777778888888 888887431111 1 222335799
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-..
T Consensus 80 pvV~~~~~ 87 (268)
T cd06270 80 PLVLINRH 87 (268)
T ss_pred CEEEEecc
Confidence 99999765
No 357
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=29.90 E-value=1.8e+02 Score=26.92 Aligned_cols=29 Identities=17% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcceEEEecCchH
Q 017815 77 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI 109 (365)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv 109 (365)
..+.+.+.+.+..+.+.|+| ||=|||+|.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAd----iIDvG~~st 48 (258)
T cd00423 20 FLSLDKALEHARRMVEEGAD----IIDIGGEST 48 (258)
T ss_pred cCCHHHHHHHHHHHHHCCCC----EEEECCCcC
Confidence 45777888778888888988 899999887
No 358
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=29.84 E-value=2.6e+02 Score=27.13 Aligned_cols=88 Identities=10% Similarity=0.119 Sum_probs=49.2
Q ss_pred chhhhhccCCceEEEEEccCch-----HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcc
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVA-----PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRC 99 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~-----~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~ 99 (365)
.++++.+. -+++.++++..-. ....+.+.+.+++.| +.+....+..+.+ ...+...+..++..+ +
T Consensus 134 ~~~~~~~~-w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~~~~~~~~---~~d~~~~l~~ik~~~-~--- 203 (396)
T cd06373 134 LALHEHFN-WSRAALLYHDDKNDDRPCYFTLEGVYTVLKEEN--ITVSDFPFDEDKE---LDDYKELLRDISKKG-R--- 203 (396)
T ss_pred HHHHHHcC-CeEEEEEEECCCCCcchHHHHHHHHHHHHhhcC--ceeeEEeecCCcc---ccCHHHHHHHHHhcC-c---
Confidence 34555443 5888888765432 235677788888877 5554333332211 234556666666543 5
Q ss_pred eEEEecCchHhhHHHHHHHHhhcCC
Q 017815 100 TFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 100 ~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+||..+. .-|.+.++-.+...|+
T Consensus 204 vii~~~~--~~~~~~~~~qa~~~g~ 226 (396)
T cd06373 204 VVIMCAS--PDTVREIMLAAHRLGL 226 (396)
T ss_pred EEEEecC--HHHHHHHHHHHHHcCC
Confidence 7776553 4566666654444453
No 359
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=29.80 E-value=2.1e+02 Score=24.27 Aligned_cols=88 Identities=20% Similarity=0.035 Sum_probs=51.6
Q ss_pred hhhhhccCCceEEEEEccCchHHHHHHHHHHHhh-CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEE
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVA 103 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~-~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIa 103 (365)
+.|++++ -+.++-+.+...... .+ .|.+ .+ +++ +.. - +....--+++-..+. ++. +++.
T Consensus 5 ~~L~~~G-i~~vFg~pG~~~~~l-~~----al~~~~~--i~~--i~~-r-----hE~~A~~mA~gyar~t~~g---v~~~ 65 (162)
T cd07038 5 ERLKQLG-VKHVFGVPGDYNLPL-LD----AIEENPG--LRW--VGN-C-----NELNAGYAADGYARVKGLG---ALVT 65 (162)
T ss_pred HHHHHcC-CCEEEEeCCccHHHH-HH----HHhhcCC--ceE--Eee-C-----CHHHHHHHHHHHHHhhCCE---EEEE
Confidence 4566664 688888888876543 23 3322 24 442 222 2 223333333322222 344 6666
Q ss_pred ecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 104 LGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
..|.-...+.-.++.++..++|++.|...
T Consensus 66 t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~ 94 (162)
T cd07038 66 TYGVGELSALNGIAGAYAEHVPVVHIVGA 94 (162)
T ss_pred cCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 66666777777788889999999999655
No 360
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=29.48 E-value=54 Score=29.74 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHH--HHcCCCCCCCCCCCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEE
Q 017815 287 IDDSIVKRVHNIL--QQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVF 346 (365)
Q Consensus 287 ~~~~~~~~i~~ll--~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~ 346 (365)
|+.+..++|+.+| .|+.||+++.+..+.--+++.|++.. | ||.- ||.+-+
T Consensus 101 ISAKvm~~ikavLgaTKiDLPVDINDPYDlGLLLRhLRHHS-N--------LLAn-IgdP~V 152 (238)
T PF02084_consen 101 ISAKVMEDIKAVLGATKIDLPVDINDPYDLGLLLRHLRHHS-N--------LLAN-IGDPEV 152 (238)
T ss_pred ccHHHHHHHHHHhcccccccccccCChhhHHHHHHHHHHHH-H--------HHhh-cCCHHH
Confidence 5677888888888 56889999986666666777777754 1 4555 786633
No 361
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=29.45 E-value=4.8e+02 Score=25.95 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred cceEEEecCchHh-hHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIG-DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~-D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+++|||..+ =+++++.. ....++++.|=+.
T Consensus 170 D~vv~pvG~GG~~~Gia~~~k~-~~p~~~vigVep~ 204 (409)
T TIGR02079 170 DYVVVPVGGGGLISGLTTYLAG-TSPKTKIIGVEPE 204 (409)
T ss_pred CEEEEEecHhHHHHHHHHHHHH-hCCCCEEEEEEeC
Confidence 4699999997654 44444432 2345677776554
No 362
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=29.43 E-value=1.2e+02 Score=27.68 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=55.7
Q ss_pred cccccccccceeeecc--cchh---hhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHH
Q 017815 8 YKDRFFGNSDTLLLIS--NNCL---YYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDT 82 (365)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~~~---l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~ 82 (365)
|.+-|....-+.+-.+ ...+ ++++=.++.++||.+..+.--.+..+ +..+. .+..+++|. ..-++.
T Consensus 84 Y~~tfisRpY~d~~dK~~~~~~f~klK~iW~~rdilIVEG~~sR~GvgnDL---Fdnak---sI~rIicPs---knAf~~ 154 (225)
T PF08759_consen 84 YGSTFISRPYIDYKDKSKSARYFEKLKQIWKDRDILIVEGEKSRSGVGNDL---FDNAK---SIKRIICPS---KNAFSK 154 (225)
T ss_pred ecceeeeeeeeecccchHHHHHHHHHHHHhCCCcEEEEecCCeecCCCchh---hhCcc---ceEEEECCc---hhhHHH
Confidence 4555555555554221 2333 34432478999999988754455444 33332 445566554 335788
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHH
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAA 117 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA 117 (365)
++++.+.+++..-+ .=+++++|= +||.+|
T Consensus 155 ~d~I~~~i~~~~~~-~LiLiaLGP-----TAtVLa 183 (225)
T PF08759_consen 155 YDEILEAIKKYAKD-KLILIALGP-----TATVLA 183 (225)
T ss_pred HHHHHHHHHHhCCC-cEEEEecCC-----cchhhH
Confidence 88999888877433 346677773 556554
No 363
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=29.32 E-value=5.1e+02 Score=25.22 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=21.2
Q ss_pred CcceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 97 RRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 97 r~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
-+.+|+++|||..+= +++++.. ...+++++.|-..
T Consensus 149 ~D~vv~~vG~Gg~~aGi~~~~k~-~~p~~kvigVe~~ 184 (380)
T TIGR01127 149 VDTVIVPVGGGGLISGVASAAKQ-INPNVKVIGVEAE 184 (380)
T ss_pred CCEEEEEeChHHHHHHHHHHHHH-hCCCCEEEEEEEC
Confidence 356999999997764 4443322 2345666666443
No 364
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=29.30 E-value=1.5e+02 Score=30.95 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=53.0
Q ss_pred cCCceEEEEEccCchH-----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 32 VQGKKVLVVTNNTVAP-----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 32 ~~~~~~livtd~~~~~-----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
...+|.||+.++...+ .+...+.-.|.+++ +++++. +... -....+++ +....++.|.||.+||
T Consensus 177 ~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~--i~~evv-~T~~-----~~HArei~---rt~dl~kyDgIv~vsG 245 (579)
T KOG1116|consen 177 KRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAG--ISFEVV-LTTR-----PNHAREIV---RTLDLGKYDGIVCVSG 245 (579)
T ss_pred CCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcC--ceEEEE-EecC-----ccHHHHHH---HhhhccccceEEEecC
Confidence 3468999999986533 36777777888998 444332 2211 12344444 4446677779999988
Q ss_pred chHhhHHHHHHHHhh-------cCCcEEEeccc
Q 017815 107 GVIGDMCGYAAASYL-------RGVSFIQIPTT 132 (365)
Q Consensus 107 Gsv~D~ak~vA~~~~-------~g~p~i~IPTT 132 (365)
--++-=+ +-..+. ..+|+-.||-.
T Consensus 246 DGl~hEV--lNGLl~R~D~~~~~klPigiiP~G 276 (579)
T KOG1116|consen 246 DGLLHEV--LNGLLERPDWEAAVKLPIGIIPCG 276 (579)
T ss_pred CcCHHHh--hhccccccchhhHhcCceeEeecC
Confidence 5543222 222222 46888888866
No 365
>PLN02565 cysteine synthase
Probab=29.30 E-value=4.7e+02 Score=25.05 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=22.7
Q ss_pred cceEEEecCchHh-hHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIG-DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~-D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+++|||..+ =+++++.. +...++++.|-+.
T Consensus 174 d~vv~~vG~GG~l~Gi~~~lk~-~~p~~kvi~Vep~ 208 (322)
T PLN02565 174 DAFVSGIGTGGTITGAGKYLKE-QNPDIKLYGVEPV 208 (322)
T ss_pred CEEEEcCCchHHHHHHHHHHHH-hCCCCEEEEEecC
Confidence 4577899988765 56665543 3456788887665
No 366
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=29.27 E-value=39 Score=28.59 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=16.1
Q ss_pred eEEEecCc-hHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 100 TFVALGGG-VIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 100 ~IIaiGGG-sv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+||.=||+ ++..+. ..|+|.|.||..
T Consensus 75 lvIs~aG~~Ti~E~l-------~~g~P~I~ip~~ 101 (167)
T PF04101_consen 75 LVISHAGAGTIAEAL-------ALGKPAIVIPLP 101 (167)
T ss_dssp EEEECS-CHHHHHHH-------HCT--EEEE--T
T ss_pred EEEeCCCccHHHHHH-------HcCCCeeccCCC
Confidence 99998775 555554 479999999998
No 367
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.23 E-value=2.3e+02 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHcCCC
Q 017815 80 MDTLMKVFDKAIESRLD 96 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~d 96 (365)
.+...+++..++..|..
T Consensus 14 ~~~a~~~~~~Lr~~g~~ 30 (91)
T cd00860 14 LDYAKEVAKKLSDAGIR 30 (91)
T ss_pred HHHHHHHHHHHHHCCCE
Confidence 34444444444444444
No 368
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.21 E-value=2e+02 Score=22.72 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+...+.++++.+++.+. .++.|.+||.-...
T Consensus 63 ~~~~~~~~i~~l~~~~~--~~~~i~vGG~~~~~ 93 (119)
T cd02067 63 HMTLMKEVIEELKEAGL--DDIPVLVGGAIVTR 93 (119)
T ss_pred cHHHHHHHHHHHHHcCC--CCCeEEEECCCCCh
Confidence 56677777777777654 12667777765554
No 369
>PRK08250 glutamine amidotransferase; Provisional
Probab=29.19 E-value=4.3e+02 Score=23.99 Aligned_cols=80 Identities=10% Similarity=0.097 Sum_probs=43.4
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHh----
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIG---- 110 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~---- 110 (365)
|++|+-....... ..+...+++.| +++.++.+..+++-|. .-.++| .||-.|| .++.
T Consensus 2 ~i~vi~h~~~e~~--g~~~~~~~~~g--~~~~~~~~~~g~~~p~-----------~~~~~d---~vii~GGp~~~~~~~~ 63 (235)
T PRK08250 2 RVHFIIHESFEAP--GAYLKWAENRG--YDISYSRVYAGEALPE-----------NADGFD---LLIVMGGPQSPRTTRE 63 (235)
T ss_pred eEEEEecCCCCCc--hHHHHHHHHCC--CeEEEEEccCCCCCCC-----------CccccC---EEEECCCCCChhhccc
Confidence 4556655444332 22344456677 6666554445554332 001334 7777777 2322
Q ss_pred --------hHHHHHHHHhhcCCcEEEecccc
Q 017815 111 --------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 111 --------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+..+++...+..++|++.|+-..
T Consensus 64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred cccccchHHHHHHHHHHHHcCCCEEEEChhH
Confidence 23355544556899999998763
No 370
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=29.14 E-value=2.3e+02 Score=28.66 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEE
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
+.+.+++.+.+++.++| .|+.
T Consensus 59 y~d~~~i~~~a~~~~~D---~I~p 79 (472)
T PRK07178 59 YLNPRRLVNLAVETGCD---ALHP 79 (472)
T ss_pred hcCHHHHHHHHHHHCCC---EEEe
Confidence 44566888899999999 7776
No 371
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=29.14 E-value=1.7e+02 Score=24.04 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=36.9
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
|++|+++.+. .+.+++.+.|+..+ +++ +++..+. +..-..++++.+.+.+ ++ +-|.+- +.-|.+
T Consensus 1 kVFIvhg~~~--~~~~~v~~~L~~~~--~ep--~i~~~~~-~~g~tiie~le~~~~~--~~---faIvl~--TpDD~~ 64 (125)
T PF10137_consen 1 KVFIVHGRDL--AAAEAVERFLEKLG--LEP--IIWHEQP-NLGQTIIEKLEEAADS--VD---FAIVLF--TPDDIG 64 (125)
T ss_pred CEEEEeCCCH--HHHHHHHHHHHhCC--Cce--EEeecCC-CCCCchHHHHHHHhcc--CC---EEEEEE--cccccc
Confidence 6889999553 46777888888666 554 3444333 4444556666655533 34 555553 334444
No 372
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=29.07 E-value=2.9e+02 Score=22.17 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=20.2
Q ss_pred cceEEEecC-chHhhHHHHHHHHhhcC-----CcEEEeccc
Q 017815 98 RCTFVALGG-GVIGDMCGYAAASYLRG-----VSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGG-Gsv~D~ak~vA~~~~~g-----~p~i~IPTT 132 (365)
.|.||++|| |++-.+.-.+ .... .|+..||.-
T Consensus 50 ~d~vvv~GGDGTi~~vvn~l---~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 50 FDRVLVCGGDGTVGWVLNAL---DKRELPLPEPPVAVLPLG 87 (124)
T ss_pred CCEEEEEccccHHHHHHHHH---HhcccccCCCcEEEeCCC
Confidence 348888888 5555555433 2233 678888876
No 373
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=29.00 E-value=3.3e+02 Score=26.13 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh-hHHHHHHHHhhcCCcEE
Q 017815 49 YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG-DMCGYAAASYLRGVSFI 127 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~-D~ak~vA~~~~~g~p~i 127 (365)
+.+++++.+. ++ ..++++..+.....+.+.+.+..+...-.. ++.+||||+|.++ .+++.+.. ......+-
T Consensus 73 Le~~L~~~fg-----Lk-~~iVvp~~~~~~~~~~vg~~aA~~L~~~l~-~~~~IGvswG~Tl~~~~~~l~~-~~~~~~~~ 144 (318)
T PRK15418 73 LENALRQHFS-----LQ-HIRVLPALADADIGGRLGIGAAHMLMSLLQ-PQQLLAVGFGEATMNTLQHLSG-FISSQQIR 144 (318)
T ss_pred HHHHHHHHhC-----CC-EEEEEeCCCcccHHHHHHHHHHHHHHHhcC-CCCEEEEcchHHHHHHHHhccc-cCCCCCCE
Confidence 5566666553 33 234555433223334555555444443333 3368999999544 55554421 11334567
Q ss_pred Eeccc
Q 017815 128 QIPTT 132 (365)
Q Consensus 128 ~IPTT 132 (365)
.||..
T Consensus 145 vV~l~ 149 (318)
T PRK15418 145 LVTLS 149 (318)
T ss_pred EEEcC
Confidence 77777
No 374
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=28.83 E-value=3.8e+02 Score=27.57 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=22.1
Q ss_pred cceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+++++|||..+= ++.++.. ....+++|.|-..
T Consensus 168 D~vvvpvGgGGliaGia~~lk~-~~p~~kVIgVep~ 202 (499)
T TIGR01124 168 DAVFVPVGGGGLAAGVAALIKQ-LMPEIKVIGVEPT 202 (499)
T ss_pred CEEEEccCccHHHHHHHHHHHH-hCCCCEEEEEEEC
Confidence 46889999998764 4444432 2346778887665
No 375
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=28.82 E-value=3.9e+02 Score=25.45 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=58.8
Q ss_pred eeecccchhhhhccCCceEEEEEccCc-hHHHHHHHHHHHhhCCCCce--EEEEEeCCCCCCCCHHHHHHHHHHHHHcCC
Q 017815 19 LLLISNNCLYYRHVQGKKVLVVTNNTV-APLYLDKVTDALTRGNPNVS--VENVILPDGENYKNMDTLMKVFDKAIESRL 95 (365)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~livtd~~~-~~~~~~~v~~~L~~~g~~i~--v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~ 95 (365)
..+.-..++++.++ -+++.+|++.+- .+...+.+.+.+++.| +. +......+.... +........+++.+.
T Consensus 122 ~~~~ai~~ll~~~~-w~~vaii~~~~~~g~~~~~~l~~~l~~~g--~~~~i~~~~~~~~~~~---~~~~~~l~~l~~~~~ 195 (362)
T cd06367 122 QQADVMLEILEEYD-WHQFSVVTSRDPGYRDFLDRVETTLEESF--VGWEFQLVLTLDLSDD---DGDARLLRQLKKLES 195 (362)
T ss_pred HHHHHHHHHHHHcC-CeEEEEEEEcCcccHHHHHHHHHHHHhcc--cceeeeeeEEeccCCC---cchHHHHHHHHhcCC
Confidence 33333456666664 578888888654 3447788888888887 44 322222111111 145566666677666
Q ss_pred CCcceEEEecCchHhhHHHHHHHHhhcCC---cEEEeccc
Q 017815 96 DRRCTFVALGGGVIGDMCGYAAASYLRGV---SFIQIPTT 132 (365)
Q Consensus 96 dr~~~IIaiGGGsv~D~ak~vA~~~~~g~---p~i~IPTT 132 (365)
+ +||..| +.-|...++..+...|+ .++-|-|.
T Consensus 196 ~---vivl~~--~~~~~~~il~~a~~~g~~~~~~~wI~~~ 230 (362)
T cd06367 196 R---VILLYC--SKEEAERIFEAAASLGLTGPGYVWIVGE 230 (362)
T ss_pred c---EEEEeC--CHHHHHHHHHHHHHcCCCCCCcEEEECc
Confidence 5 666544 45666666655544443 26666555
No 376
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=28.78 E-value=3.1e+02 Score=25.28 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh------HHHHHHHHhhcCCcEEEecccc
Q 017815 75 ENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD------MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 75 e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D------~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.|+++ +...++++.+.+.|-| -|=|||..=++ +.+.+. -..++|+|..|...
T Consensus 23 DP~k~-~~~~ei~~~~~~~GTD----aImIGGS~gvt~~~~~~~v~~ik--~~~~lPvilfP~~~ 80 (240)
T COG1646 23 DPDKT-EEADEIAEAAAEAGTD----AIMIGGSDGVTEENVDNVVEAIK--ERTDLPVILFPGSP 80 (240)
T ss_pred Ccccc-cccHHHHHHHHHcCCC----EEEECCcccccHHHHHHHHHHHH--hhcCCCEEEecCCh
Confidence 34454 6778888888888888 45577755232 333331 25689999999885
No 377
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=28.73 E-value=5e+02 Score=24.40 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+...-.+++.+.+.+.| ++-. ++. ..|| ..=|.++-.++++.+.+.-.+|-.+|+++|+ ++-|+.+.+-.+..
T Consensus 22 ~iD~~~l~~li~~l~~~G--v~gi-~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~ 97 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYG--LEAL-FAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEK 97 (296)
T ss_pred CcCHHHHHHHHHHHHhcC--CCEE-EECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHH
Confidence 343345566666676777 5532 222 2345 3567788888888887765556669999985 66676666555555
Q ss_pred cCCcEEEe
Q 017815 122 RGVSFIQI 129 (365)
Q Consensus 122 ~g~p~i~I 129 (365)
.|..-+.+
T Consensus 98 ~Gadav~~ 105 (296)
T TIGR03249 98 AGADGYLL 105 (296)
T ss_pred hCCCEEEE
Confidence 67766554
No 378
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=28.71 E-value=1.6e+02 Score=28.34 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCCceEEEEEeCCC-C-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH-hhcCCc
Q 017815 49 YLDKVTDALTRGNPNVSVENVILPDG-E-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS-YLRGVS 125 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~~~~-e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~-~~~g~p 125 (365)
+.+++++.+. ++ ...++|.. . .......+-+...++.+.-+...| +||||+|.++-.+ +-.. ......
T Consensus 70 Le~~L~~~fg-----L~-~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gd-vigV~wGrTv~a~--~~~l~~~~~~~ 140 (321)
T COG2390 70 LEQQLKERFG-----LK-EAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGD-VIGVGWGRTLSAV--VDNLPPAPLRD 140 (321)
T ss_pred HHHHHHHhcC-----CC-eEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCC-EEEEeccHHHHHH--HHhcCcCccCC
Confidence 4555555443 33 22344532 2 233344466666666666666666 9999999987665 2111 111223
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
+-.||.+
T Consensus 141 ~~vV~l~ 147 (321)
T COG2390 141 VKVVQLT 147 (321)
T ss_pred eEEEECC
Confidence 5667766
No 379
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=28.49 E-value=1e+02 Score=32.56 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh-------hcCCcEEEecccc
Q 017815 77 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-------LRGVSFIQIPTTV 133 (365)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-------~~g~p~i~IPTTl 133 (365)
-.|+..+-++++.|.++|....+-|+++||..=.=+.++++..- ...+|||-|=||+
T Consensus 505 ~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTM 568 (682)
T COG1770 505 KNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTM 568 (682)
T ss_pred cccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhh
Confidence 35899999999999999999999999999876666677665431 1347888888884
No 380
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.46 E-value=3.2e+02 Score=25.90 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=48.3
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
..++++. +.+|+.+++....+.. ..+.+.+.+++.| +++... .++ +.-.++...+.++++.++| .|+
T Consensus 130 ~~~~~~~-~~~~v~il~~d~~~g~~~~~~~~~~l~~~G--~~vv~~~~~~-----~~~~D~s~~i~~i~~~~~d---~v~ 198 (347)
T cd06336 130 LAYAKKP-GGKKVALLGPNDAYGQPWVAAYKAAWEAAG--GKVVSEEPYD-----PGTTDFSPIVTKLLAEKPD---VIF 198 (347)
T ss_pred HHHHhhc-CCceEEEEccCCchhHHHHHHHHHHHHHcC--CEEeeecccC-----CCCcchHHHHHHHHhcCCC---EEE
Confidence 3444432 3578888777665543 6777888888888 554321 222 2334677778888888888 665
Q ss_pred EecCc--hHhhHHHHH
Q 017815 103 ALGGG--VIGDMCGYA 116 (365)
Q Consensus 103 aiGGG--sv~D~ak~v 116 (365)
-.+.+ ....+.|.+
T Consensus 199 ~~~~~~~~~~~~~~~~ 214 (347)
T cd06336 199 LGGPSPAPAALVIKQA 214 (347)
T ss_pred EcCCCchHHHHHHHHH
Confidence 44332 344444443
No 381
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=28.40 E-value=1.6e+02 Score=27.92 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhC-CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEE
Q 017815 49 YLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 127 (365)
Q Consensus 49 ~~~~v~~~L~~~-g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i 127 (365)
..+-+.+.-++. + +++. ....... +.+.+.+.++.+.+.|+| +||+.|..-. |...-+|..| ..+.|+
T Consensus 21 ~~~G~~~~~~~~~~--i~~~--~~e~~~~--~~~~~~~~~~~~~~~g~d---lIi~~g~~~~-~~~~~vA~~y-Pd~~F~ 89 (306)
T PF02608_consen 21 AYEGLKRAEKELDG--IEII--YVENVPE--TDADYEEAIRQLADQGYD---LIIGHGFEYS-DALQEVAKEY-PDTKFI 89 (306)
T ss_dssp HHHHHHHHHHHCTT--EEEE--EEES-S---TCHHHHHHHHHHHHTT-S---EEEEESGGGH-HHHHHHHTC--TTSEEE
T ss_pred HHHHHHHHHHHcCC--ceEE--EEecCCc--cHHHHHHHHHHHHHcCCC---EEEEccHHHH-HHHHHHHHHC-CCCEEE
Confidence 344444444455 5 5543 3333221 467888888999999999 9998776665 4444444333 567787
Q ss_pred Eeccc
Q 017815 128 QIPTT 132 (365)
Q Consensus 128 ~IPTT 132 (365)
.+=++
T Consensus 90 ~~d~~ 94 (306)
T PF02608_consen 90 IIDGY 94 (306)
T ss_dssp EESS-
T ss_pred EEecC
Confidence 77554
No 382
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=28.21 E-value=4.3e+02 Score=23.54 Aligned_cols=76 Identities=12% Similarity=0.229 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhh-CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 46 APLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 46 ~~~~~~~v~~~L~~-~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+..+.+.+.+.+++ .| +++. ... ... +.+...+.++.+.+.++| .||-.+..+... -..+......++
T Consensus 14 ~~~~~~gi~~~~~~~~~--~~~~--~~~-~~~--~~~~~~~~i~~l~~~~vd---giii~~~~~~~~-~~~~~~l~~~~i 82 (272)
T cd06301 14 LTLLRNAMKEHAKVLGG--VELQ--FED-AKN--DVATQLSQVENFIAQGVD---AIIVVPVDTAAT-APIVKAANAAGI 82 (272)
T ss_pred HHHHHHHHHHHHHHcCC--cEEE--EeC-CCC--CHHHHHHHHHHHHHcCCC---EEEEecCchhhh-HHHHHHHHHCCC
Confidence 44466677777877 77 5543 222 222 446666777788888888 777665443211 122333456899
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-+.
T Consensus 83 Pvv~~~~~ 90 (272)
T cd06301 83 PLVYVNRR 90 (272)
T ss_pred eEEEecCC
Confidence 99998654
No 383
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=28.19 E-value=3.2e+02 Score=26.65 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=25.1
Q ss_pred HHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 017815 252 GHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 306 (365)
Q Consensus 252 ~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~ 306 (365)
+|+|++. . .-.||..-+.++.+.+--.-++. .+...+++.++.+.+|++.
T Consensus 254 ~Hal~~~--l-~~~~~i~HG~~~ai~lp~v~~~~--~~~~~~~~~~~a~~lg~~~ 303 (375)
T cd08194 254 VHGMSRP--I-GALFHVPHGLSNAMLLPAVTEFS--LPSAPERYADIARAMGEAN 303 (375)
T ss_pred HHHhhhh--h-hhCCCCChHHHHHHHHHHHHHhh--cccCHHHHHHHHHHhCCCC
Confidence 4555543 1 23455555554444332222222 1334567777778888864
No 384
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=28.18 E-value=3.2e+02 Score=23.35 Aligned_cols=74 Identities=8% Similarity=-0.028 Sum_probs=41.8
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHh-hCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALT-RGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~-~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
-.+.+.+ +.++++||-|....+.+.+.+.+.-. ..| +++.++ ++++.++.+.+ ..+...++|=
T Consensus 22 ~~W~~~~-~~~~IiVvdD~vA~D~~~k~~lkma~~P~g--vk~~i~------------sv~~a~~~l~~-~~~~~~vlvl 85 (158)
T PRK09756 22 VTWTSTI-GANLLVVVDDVVANDDIQQKLMGITAETYG--FGIRFF------------TIEKTINVIGK-AAPHQKIFLI 85 (158)
T ss_pred Hhhhccc-CCCEEEEEcchhcCCHHHHHHHHhcCCCCC--CEEEEE------------EHHHHHHHHHh-ccCCceEEEE
Confidence 3444444 36777777777666667666666444 456 565432 34444555544 3333335555
Q ss_pred ecCchHhhHHHHH
Q 017815 104 LGGGVIGDMCGYA 116 (365)
Q Consensus 104 iGGGsv~D~ak~v 116 (365)
+. ++-|+.+.+
T Consensus 86 ~~--~~~da~~l~ 96 (158)
T PRK09756 86 CR--TPQTVRKLV 96 (158)
T ss_pred EC--CHHHHHHHH
Confidence 54 788887765
No 385
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=28.08 E-value=3.6e+02 Score=26.98 Aligned_cols=101 Identities=9% Similarity=-0.007 Sum_probs=56.5
Q ss_pred ccceeeecccchhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH-
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE- 92 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~- 92 (365)
|+....+....++++.++ -+++.+|++..-+ ....+.+.+.+++.|. +.+.... .....++...+...+..+++
T Consensus 154 p~d~~~~~ai~~~i~~~~-w~~Vaii~~~~~yg~~~~~~~~~~~~~~g~-~~v~~~~--~i~~~~~~~d~~~~l~~ik~~ 229 (463)
T cd06376 154 PPDSFQAQAMVDIVKALG-WNYVSTLASEGNYGESGVEAFTQISREAGG-VCIAQSI--KIPREPRPGEFDKIIKRLLET 229 (463)
T ss_pred CCHHHHHHHHHHHHHHcC-CeEEEEEEeCChHHHHHHHHHHHHHHHcCC-ceEEEEE--ecCCCCCHHHHHHHHHHHhcc
Confidence 333334444456666653 5888888754433 3467777777777541 2221111 11123455678888888865
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+++ +||..| ..-|+..++-.+...|.
T Consensus 230 ~~~~---vIvl~~--~~~~~~~ll~~a~~~~~ 256 (463)
T cd06376 230 PNAR---AVIIFA--NEDDIRRVLEAAKRANQ 256 (463)
T ss_pred CCCe---EEEEec--ChHHHHHHHHHHHhcCC
Confidence 4666 777766 45566666644444443
No 386
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=28.03 E-value=2.4e+02 Score=27.49 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=55.5
Q ss_pred chhhhhccCCceEEEEEccCchHH----HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL----YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~----~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
.++++.+. -+++.+|++..-+.. ..+.+.+.++..| +++......+ +......+++..+++.+ + +
T Consensus 129 ~~ll~~~~-W~~vaiiy~~~~~~~~~~~~~~~l~~~~~~~g--i~v~~~~~~~----~~~~d~~~~l~~ik~~~-r---v 197 (387)
T cd06386 129 SALFERFH-WRSALLVYEDDKQERNCYFTLEGVHHVFQEEG--YHMSIYPFDE----TKDLDLDEIIRAIQASE-R---V 197 (387)
T ss_pred HHHHHhCC-CeEEEEEEEcCCCCccceehHHHHHHHHHhcC--ceEEEEecCC----CCcccHHHHHHHHHhcC-c---E
Confidence 45555554 478888876554322 2677888888888 6654332221 12346777777777766 4 7
Q ss_pred EEEecCchHhhHHHHHHHHhhcC---CcEEEeccc
Q 017815 101 FVALGGGVIGDMCGYAAASYLRG---VSFIQIPTT 132 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g---~p~i~IPTT 132 (365)
||-.+.. -++..++..+...| -.++-|.+-
T Consensus 198 ii~~~~~--~~~~~ll~~A~~~gm~~~~yv~i~~d 230 (387)
T cd06386 198 VIMCAGA--DTIRSIMLAAHRRGLTSGDYIFFNIE 230 (387)
T ss_pred EEEecCH--HHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence 7766544 45555555554443 456555554
No 387
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=28.01 E-value=4.4e+02 Score=23.57 Aligned_cols=73 Identities=12% Similarity=0.019 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.++ .... . .-.++.+.+...++| .||..+.-..-+. +......|+
T Consensus 24 ~~~~~~~gi~~~~~~~g--~~~~v~--~~~~-~----~~~~~~~~l~~~~~d---giii~~~~~~~~~---~~~~~~~~i 88 (275)
T cd06295 24 FFLSLLGGIADALAERG--YDLLLS--FVSS-P----DRDWLARYLASGRAD---GVILIGQHDQDPL---PERLAETGL 88 (275)
T ss_pred hHHHHHHHHHHHHHHcC--CEEEEE--eCCc-h----hHHHHHHHHHhCCCC---EEEEeCCCCChHH---HHHHHhCCC
Confidence 34446677888888888 665433 2211 1 224555566667777 8888764322121 222345799
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-+.
T Consensus 89 pvV~~~~~ 96 (275)
T cd06295 89 PFVVWGRP 96 (275)
T ss_pred CEEEECCc
Confidence 99999776
No 388
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=27.94 E-value=4e+02 Score=25.48 Aligned_cols=72 Identities=13% Similarity=0.252 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEE
Q 017815 48 LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 127 (365)
Q Consensus 48 ~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i 127 (365)
.+.+-+.+.+.+.| +.+ +.+. ... +.+...+..+.+.+.++| .||-.|-..--+...++ ...++|+|
T Consensus 75 ~i~~gi~~~~~~~g--y~~--~l~~-~~~--~~~~e~~~~~~l~~~~vd---GiIi~~~~~~~~~~~~l---~~~~~P~V 141 (333)
T COG1609 75 EILKGIEEAAREAG--YSL--LLAN-TDD--DPEKEREYLETLLQKRVD---GLILLGERPNDSLLELL---AAAGIPVV 141 (333)
T ss_pred HHHHHHHHHHHHcC--CEE--EEEC-CCC--CHHHHHHHHHHHHHcCCC---EEEEecCCCCHHHHHHH---HhcCCCEE
Confidence 36777888889988 654 3333 222 667888899999999999 99999944444444433 35699999
Q ss_pred Eeccc
Q 017815 128 QIPTT 132 (365)
Q Consensus 128 ~IPTT 132 (365)
.+=..
T Consensus 142 ~i~~~ 146 (333)
T COG1609 142 VIDRS 146 (333)
T ss_pred EEeCC
Confidence 99766
No 389
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.60 E-value=4.5e+02 Score=23.49 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+.+.+.+.+++.| +++. +++. +. +.+.-.+.++.+...++| .||-.+..+-. ....+......++|+
T Consensus 15 ~~~~~~i~~~~~~~g--~~~~--~~~~-~~--~~~~~~~~i~~~~~~~~d---giii~~~~~~~-~~~~l~~~~~~~ipv 83 (277)
T cd06319 15 QIMGRGVKSKAKALG--YDAV--ELSA-EN--SAKKELENLRTAIDKGVS---GIIISPTNSSA-AVTLLKLAAQAKIPV 83 (277)
T ss_pred HHHHHHHHHHHHhcC--CeEE--EecC-CC--CHHHHHHHHHHHHhcCCC---EEEEcCCchhh-hHHHHHHHHHCCCCE
Confidence 335666677777777 6653 3332 22 333444566666667777 77644322211 112232234579999
Q ss_pred EEecc
Q 017815 127 IQIPT 131 (365)
Q Consensus 127 i~IPT 131 (365)
|.+=.
T Consensus 84 V~~~~ 88 (277)
T cd06319 84 VIADI 88 (277)
T ss_pred EEEec
Confidence 98743
No 390
>PRK06490 glutamine amidotransferase; Provisional
Probab=27.40 E-value=4.8e+02 Score=23.80 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=46.4
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch-Hh--
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IG-- 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs-v~-- 110 (365)
-.|+++|-+.... ....+.+.|++.| +++.++....+++.|+ .+. ++| .+|-.||-. +.
T Consensus 7 ~~~vlvi~h~~~~--~~g~l~~~l~~~g--~~~~v~~~~~~~~~p~--~l~---------~~d---gvii~Ggp~~~~d~ 68 (239)
T PRK06490 7 KRPVLIVLHQERS--TPGRVGQLLQERG--YPLDIRRPRLGDPLPD--TLE---------DHA---GAVIFGGPMSANDP 68 (239)
T ss_pred CceEEEEecCCCC--CChHHHHHHHHCC--CceEEEeccCCCCCCC--ccc---------ccC---EEEEECCCCCCCCC
Confidence 3578888776543 2334566677777 6665554333444331 111 234 666666543 22
Q ss_pred -----hHHHHHHHHhhcCCcEEEecccc
Q 017815 111 -----DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 111 -----D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+..+++..++..++|++-|+...
T Consensus 69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 69 DDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 23455554566899999998774
No 391
>PRK05370 argininosuccinate synthase; Validated
Probab=27.36 E-value=2.3e+02 Score=28.67 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=43.8
Q ss_pred hhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCC
Q 017815 27 LYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLD 96 (365)
Q Consensus 27 ~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~d 96 (365)
.++++.+++|+++.++.++.-. ...+ |++.| ++|..+..+-|.+ ..++++.+-+.+.+.|++
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~w----L~e~~--~eVia~~aDvGQ~--~~ed~~~i~~kA~~~GA~ 66 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLW----MRQKG--AVPYAYTANLGQP--DEDDYDAIPRRAMEYGAE 66 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHH----HHhcC--CeEEEEEEECCCC--CccchHHHHHHHHHhCCC
Confidence 4567756899999999998665 3443 44446 7888777776764 234567777788888886
No 392
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=27.27 E-value=31 Score=28.27 Aligned_cols=32 Identities=6% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCceEEEEEccCchHH-HHHHHHHHHhhCCCCceE
Q 017815 33 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSV 66 (365)
Q Consensus 33 ~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v 66 (365)
.++|++++++..+... ..+.+.+..+..| +.|
T Consensus 10 ~A~rP~il~G~g~~~~~a~~~l~~lae~~~--~Pv 42 (137)
T PF00205_consen 10 SAKRPVILAGRGARRSGAAEELRELAEKLG--IPV 42 (137)
T ss_dssp H-SSEEEEE-HHHHHTTCHHHHHHHHHHHT--SEE
T ss_pred hCCCEEEEEcCCcChhhHHHHHHHHHHHHC--CCE
Confidence 3789999999987644 6777777777766 554
No 393
>PLN02550 threonine dehydratase
Probab=27.09 E-value=4.4e+02 Score=27.78 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHcCCCC-CCCCC-CCHHHHHHHHH--hcccccCCeEEEEeeCCCCc
Q 017815 288 DDSIVKRVHNILQQAKLPT-APPDT-MTVEMFKSIMA--VDKKVADGLLRLILLKGPLG 342 (365)
Q Consensus 288 ~~~~~~~i~~ll~~lglp~-~~~~~-i~~~~~~~~l~--~dkk~~~~~~~~~l~~~~~g 342 (365)
+.+..+++.+-|++.|++. .+.+. +..+.+ ..|. +..-.+..-+.+.+|+.+ |
T Consensus 466 ~~~~~~~i~~~l~~~g~~~~~l~~~~~~~~~L-R~v~g~ra~~~~E~l~~v~fPErp-G 522 (591)
T PLN02550 466 TEQELQALKKRMESAQLRTVNLTSNDLVKDHL-RYLMGGRAIVKDELLYRFVFPERP-G 522 (591)
T ss_pred CHHHHHHHHHHHHHCCCCeEeCCCChHHhhhh-hheeccccccCceEEEEEEecCcC-C
Confidence 3678999999999999876 33321 222222 2222 111111223778888873 6
No 394
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.97 E-value=4.6e+02 Score=23.40 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +++.+ +.... .-+.+...+.++.+...++| .||..+...-. ....++..-..++|
T Consensus 14 ~~~~~~g~~~~~~~~g--~~~~~--~~~~~-~~~~~~~~~~i~~l~~~~vd---gvii~~~~~~~-~~~~l~~~~~~~ip 84 (273)
T cd06310 14 WQAVKAGAEAAAKELG--VKVTF--QGPAS-ETDVAGQVNLLENAIARGPD---AILLAPTDAKA-LVPPLKEAKDAGIP 84 (273)
T ss_pred HHHHHHHHHHHHHHcC--CEEEE--ecCcc-CCCHHHHHHHHHHHHHhCCC---EEEEcCCChhh-hHHHHHHHHHCCCC
Confidence 3345666777788888 66533 22111 12455666777777777888 88876543211 11222323357999
Q ss_pred EEEecc
Q 017815 126 FIQIPT 131 (365)
Q Consensus 126 ~i~IPT 131 (365)
+|.+=.
T Consensus 85 vV~~~~ 90 (273)
T cd06310 85 VVLIDS 90 (273)
T ss_pred EEEecC
Confidence 999843
No 395
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.93 E-value=4.1e+02 Score=23.95 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=62.9
Q ss_pred ccccccccceeeecccchhhhhcc--CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHH
Q 017815 9 KDRFFGNSDTLLLISNNCLYYRHV--QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKV 86 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~ 86 (365)
+|+-|+| ++.||...-+.++++. ..-.+-+.++. ...+. +.+.++| .+...+. .|.. +.+.+.
T Consensus 34 mDG~Fvp-n~tfg~~~i~~i~~~~~~~~~dvHLMv~~--p~~~i----~~~~~~g--ad~i~~H---~Ea~---~~~~~~ 98 (220)
T PRK08883 34 MDNHYVP-NLTFGAPICKALRDYGITAPIDVHLMVKP--VDRII----PDFAKAG--ASMITFH---VEAS---EHVDRT 98 (220)
T ss_pred ccCcccC-ccccCHHHHHHHHHhCCCCCEEEEeccCC--HHHHH----HHHHHhC--CCEEEEc---ccCc---ccHHHH
Confidence 4667877 5667777666666541 12234343332 12233 3455566 4443333 3322 357888
Q ss_pred HHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 87 FDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 87 ~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++.+++.|+. +-+|+.=++..+..+.+ ...++++.|=|.
T Consensus 99 l~~ik~~g~k---~GlalnP~Tp~~~i~~~----l~~~D~vlvMtV 137 (220)
T PRK08883 99 LQLIKEHGCQ---AGVVLNPATPLHHLEYI----MDKVDLILLMSV 137 (220)
T ss_pred HHHHHHcCCc---EEEEeCCCCCHHHHHHH----HHhCCeEEEEEe
Confidence 8999999999 99999999999888755 346777777443
No 396
>PRK08526 threonine dehydratase; Provisional
Probab=26.88 E-value=5.1e+02 Score=25.70 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCcceEEEecCchHh-hHHHHHHHHhhcCCcEEEeccc
Q 017815 96 DRRCTFVALGGGVIG-DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 96 dr~~~IIaiGGGsv~-D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+.+|+.+|||..+ =+++++.. ....+++|.|-..
T Consensus 168 ~~D~vvvpvGgGGl~aGia~~~k~-~~p~~kvigVep~ 204 (403)
T PRK08526 168 DLDMVVVPVGGGGLISGIASAAKQ-INPNIKIIGVGAK 204 (403)
T ss_pred CCCEEEEecChHHHHHHHHHHHHH-hCCCCEEEEEEEC
Confidence 345699999998765 34444322 2346677766443
No 397
>PLN02735 carbamoyl-phosphate synthase
Probab=26.84 E-value=3.8e+02 Score=30.63 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=45.4
Q ss_pred ceEEEEEccCc--h-----HHHHHHHHHHHhhCCCCceEEEEEeCCCCC----CCCH--------HHHHHHHHHHHHcCC
Q 017815 35 KKVLVVTNNTV--A-----PLYLDKVTDALTRGNPNVSVENVILPDGEN----YKNM--------DTLMKVFDKAIESRL 95 (365)
Q Consensus 35 ~~~livtd~~~--~-----~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~----~~~~--------~~v~~~~~~~~~~~~ 95 (365)
+|+||+-.... . +.-+.++.+.|++.| ++|.. ++.... .+.. .+.+.+.+.+++.++
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G--~~Vi~--vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~ 99 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALKEEG--YEVVL--INSNPATIMTDPETADRTYIAPMTPELVEQVIAKERP 99 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHHHcC--CEEEE--EeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCC
Confidence 67777776642 1 124778888999999 76643 321110 0000 012345555678888
Q ss_pred CCcceEE-EecCchHhhHHHHHH
Q 017815 96 DRRCTFV-ALGGGVIGDMCGYAA 117 (365)
Q Consensus 96 dr~~~II-aiGGGsv~D~ak~vA 117 (365)
| .|+ ++||-..++++..++
T Consensus 100 D---~Iip~~gg~~gl~la~~l~ 119 (1102)
T PLN02735 100 D---ALLPTMGGQTALNLAVALA 119 (1102)
T ss_pred C---EEEECCCchhhHHHHHHHh
Confidence 8 777 578888888876543
No 398
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=26.77 E-value=4.1e+02 Score=25.89 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=33.3
Q ss_pred cchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 017815 247 LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 306 (365)
Q Consensus 247 ~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~ 306 (365)
.|..++|+|++. . .-.|+..-+.+..+.+--..++. .+...+++.++.+.+|++.
T Consensus 253 ~g~g~~Hal~h~--l-~~~~~i~HG~~~ai~lp~v~~~~--~~~~~~~~~~la~~~g~~~ 307 (374)
T cd08189 253 AGVGYVHAIAHQ--L-GGVYGIPHGLANAIVLPHVLEFY--GDAAEDRLAELADALGLGD 307 (374)
T ss_pred ccHHHHHHhhhh--h-hcCCCCChHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHcCCCC
Confidence 356788888775 3 34566666655554433222322 2445678888888888864
No 399
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=26.68 E-value=4.9e+02 Score=23.68 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=40.2
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+++++++.+....+ .+.+.|.+.| ++|..+.++.-++.+. .-..+.+.+.+.++| +|.+-.++...
T Consensus 129 ~~~~vLi~rg~~~r~----~L~~~L~~~G--~~v~~~~vY~~~~~~~--~~~~~~~~~~~~~~d----~v~ftS~~~~~ 195 (255)
T PRK05752 129 PDPRVLIMRGEGGRE----LLAERLREQG--ASVDYLELYRRCLPDY--PAGTLLQRVEAERLN----GLVVSSGQGFE 195 (255)
T ss_pred CCCEEEEEccCccHH----HHHHHHHHCC--CEEeEEEEEeecCCCC--CHHHHHHHHHhCCCC----EEEECCHHHHH
Confidence 467899999887544 3566677788 6665554443332221 123445555666777 66677777543
No 400
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=26.64 E-value=2.8e+02 Score=27.71 Aligned_cols=23 Identities=9% Similarity=-0.099 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEec
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiG 105 (365)
..+++++++.+++.++| .|+...
T Consensus 60 y~d~~~l~~~a~~~~id---~I~p~~ 82 (451)
T PRK08591 60 YLNIPAIISAAEITGAD---AIHPGY 82 (451)
T ss_pred cCCHHHHHHHHHHhCCC---EEEECC
Confidence 34567888899999999 887643
No 401
>PRK08638 threonine dehydratase; Validated
Probab=26.61 E-value=5.2e+02 Score=24.87 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEec
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IP 130 (365)
...++++++. + .+.+|+++|||+.+= +++++. .+...++++.|=
T Consensus 165 ~a~Ei~~q~~--~--~d~vv~~vG~Gg~~~Gv~~~lk-~~~~~~~vigVe 209 (333)
T PRK08638 165 IGLEILEDLW--D--VDTVIVPIGGGGLIAGIAVALK-SINPTIHIIGVQ 209 (333)
T ss_pred HHHHHHhhcC--C--CCEEEEEeChhHHHHHHHHHHH-HhCCCCEEEEEE
Confidence 4556666652 2 346888998887543 222221 123456777763
No 402
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=26.52 E-value=6.2e+02 Score=24.77 Aligned_cols=54 Identities=7% Similarity=0.062 Sum_probs=27.1
Q ss_pred chhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 017815 248 GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 306 (365)
Q Consensus 248 gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~ 306 (365)
|..+.|+|++. . .-.++..-+.+..+.+----++. .+...+++.++.+.+|++.
T Consensus 257 g~g~~Hal~h~--l-~~~~~ipHG~~~ai~lp~vl~~~--~~~~~~k~~~la~~~g~~~ 310 (382)
T PRK10624 257 GLGLVHGMAHP--L-GAFYNTPHGVANAILLPHVMEYN--ADFTGEKYRDIARAMGVKV 310 (382)
T ss_pred chHHHHHhhhH--H-hhCCCCChHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHhCCCC
Confidence 34566776654 2 23344444444433322112221 2334567777778888764
No 403
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=26.38 E-value=2e+02 Score=26.06 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=21.6
Q ss_pred hccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCC
Q 017815 30 RHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN 79 (365)
Q Consensus 30 ~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~ 79 (365)
++++..+-+-++.+...+.+.+.+.+.-.+ | ++|. ++...+.|+
T Consensus 43 ~~GG~p~~la~a~P~~~~~~l~~l~~~~~e-~--y~v~---~EaTHHGPt 86 (213)
T PF04414_consen 43 EYGGKPGELAPANPRLMKALLRALKKHAPE-G--YEVS---YEATHHGPT 86 (213)
T ss_dssp TTSS-TTEE-BB-HHHHHHHHHHHHHHGGC-T---EEE---E--S-SS--
T ss_pred ccCCCCCccccCCHHHHHHHHHHHHHhccC-C--CEEE---EEeeccCCC
Confidence 344444667777887777777777766554 5 6653 344444455
No 404
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=26.38 E-value=4.6e+02 Score=23.24 Aligned_cols=72 Identities=7% Similarity=0.033 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +++. .+. .+. +.+...+.++.+...++| .||-.+.-.. ... ....|+|
T Consensus 14 ~~~~~~gi~~~~~~~g--~~~~--~~~-~~~--~~~~~~~~i~~~~~~~~d---giii~~~~~~--~~~----~~~~gip 77 (265)
T cd06291 14 FSELARAVEKELYKKG--YKLI--LCN-SDN--DPEKEREYLEMLRQNQVD---GIIAGTHNLG--IEE----YENIDLP 77 (265)
T ss_pred HHHHHHHHHHHHHHCC--CeEE--Eec-CCc--cHHHHHHHHHHHHHcCCC---EEEEecCCcC--HHH----HhcCCCC
Confidence 4446777788888888 6643 232 222 334556777888888888 8888765322 211 2246899
Q ss_pred EEEecccc
Q 017815 126 FIQIPTTV 133 (365)
Q Consensus 126 ~i~IPTTl 133 (365)
+|.+=+..
T Consensus 78 vv~~~~~~ 85 (265)
T cd06291 78 IVSFDRYL 85 (265)
T ss_pred EEEEeCCC
Confidence 99987663
No 405
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.32 E-value=4.5e+02 Score=23.16 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=18.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCc
Q 017815 72 PDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG 107 (365)
Q Consensus 72 ~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGG 107 (365)
.+++. +...+.+.++.+++.++. -.||++|..
T Consensus 116 S~~~~--d~~~i~~~~~~lkk~~I~--v~vI~~G~~ 147 (187)
T cd01452 116 SPIEE--DEKDLVKLAKRLKKNNVS--VDIINFGEI 147 (187)
T ss_pred cCCcC--CHHHHHHHHHHHHHcCCe--EEEEEeCCC
Confidence 34444 445566677777776655 246666655
No 406
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=26.28 E-value=69 Score=31.17 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=35.6
Q ss_pred cCchHH-HHHHHHHHHh-hCCCCceEEEEEeCCCCC-----------CC-CHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 43 NTVAPL-YLDKVTDALT-RGNPNVSVENVILPDGEN-----------YK-NMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 43 ~~~~~~-~~~~v~~~L~-~~g~~i~v~~~~~~~~e~-----------~~-~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
++..|. +.+.+.+.|. ..| +.+.++.+++..+ .| -+...++.+..+.+ . +|+|+|||+
T Consensus 8 ~GaGKST~~~~l~~~l~~~~g--~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le---~---~v~a~~~g~ 79 (340)
T TIGR03575 8 PAAGKSTLARSLSATLRRERG--WAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLE---H---FLVAVINGS 79 (340)
T ss_pred CCCCHHHHHHHHHHHHHhccC--CeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHH---H---HHHHhcCcc
Confidence 344454 6777777775 466 5555554444331 11 12334455555554 2 899999998
Q ss_pred HhhH
Q 017815 109 IGDM 112 (365)
Q Consensus 109 v~D~ 112 (365)
.+..
T Consensus 80 ~~~~ 83 (340)
T TIGR03575 80 ELSA 83 (340)
T ss_pred cccC
Confidence 8754
No 407
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.26 E-value=2.1e+02 Score=28.56 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=46.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
|.++.+|+..+......++++..-.+.+ +. +|. .........-..+.++.++++++| +||.==.|.
T Consensus 129 G~K~~LvcaDTFRagAfDQLkqnA~k~~--iP--~yg--syte~dpv~ia~egv~~fKke~fd---vIIvDTSGR 194 (483)
T KOG0780|consen 129 GYKVALVCADTFRAGAFDQLKQNATKAR--VP--FYG--SYTEADPVKIASEGVDRFKKENFD---VIIVDTSGR 194 (483)
T ss_pred CCceeEEeecccccchHHHHHHHhHhhC--Ce--eEe--cccccchHHHHHHHHHHHHhcCCc---EEEEeCCCc
Confidence 6788888888766567888887666665 43 232 222334567888999999999999 887666654
No 408
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.20 E-value=3.1e+02 Score=21.38 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
+.....++++.+++.+.+ ..|.+||.-
T Consensus 64 ~~~~~~~l~~~~k~~~p~---~~iv~GG~~ 90 (121)
T PF02310_consen 64 NLPEAKRLARAIKERNPN---IPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHHHHTTCTT---SEEEEEESS
T ss_pred cHHHHHHHHHHHHhcCCC---CEEEEECCc
Confidence 445555555555544444 555555544
No 409
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=26.08 E-value=3.4e+02 Score=27.20 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=49.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-----CCCHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-----YKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-----~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
.+|++||......+.+ .++.+.-...| +++.-++-++..+ .|-..+.+++.+.+++.++| +++||+-...
T Consensus 124 ~rrvLIIGag~~~~~L-~~l~~~~~~~g--~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id--~ViIAlp~~~ 198 (442)
T TIGR03013 124 KRRILVLGTGPRAREI-ARLRRSSDRRG--HEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRID--EIVIALDERR 198 (442)
T ss_pred CCcEEEEECCHHHHHH-HHHHHhCccCC--eEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCC--EEEEECchhh
Confidence 4678888776544433 33322111234 4443332112111 12334556677777888877 4889986433
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
--+..+.+......++++..+|..
T Consensus 199 ~~~~~~~l~~~~~~gv~V~ivP~~ 222 (442)
T TIGR03013 199 GSLPVDELLECKLSGIEVVDAPSF 222 (442)
T ss_pred cchHHHHHHHHHhCCCEEEEcchH
Confidence 322222233334578888888887
No 410
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.05 E-value=90 Score=26.97 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHH-HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 79 NMDTLMKVFDKA-IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 79 ~~~~v~~~~~~~-~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++++.-+.+..+ .+.|+| +||+=|| +|.++. -..++|++.||.|
T Consensus 18 ~~e~~v~~a~~~~~~~g~d---ViIsRG~-----ta~~lr--~~~~iPVV~I~~s 62 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGAD---VIISRGG-----TAELLR--KHVSIPVVEIPIS 62 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-S---EEEEEHH-----HHHHHH--CC-SS-EEEE---
T ss_pred cHHHHHHHHHHhhHhcCCe---EEEECCH-----HHHHHH--HhCCCCEEEECCC
Confidence 778888888887 678888 9988775 445552 2348999999999
No 411
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=25.98 E-value=2.4e+02 Score=27.17 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=41.2
Q ss_pred EEEEEccC----chHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh-
Q 017815 37 VLVVTNNT----VAPLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG- 110 (365)
Q Consensus 37 ~livtd~~----~~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~- 110 (365)
++++.|+. +.+.-...+.+.|++.| +++..+ ++++ +.+.+.+.++.+...++| +||--||=++.
T Consensus 160 Iltvsde~~~G~i~Dsn~~~L~~~L~~~G--~~v~~~~iVpD-----D~~~I~~al~~a~~~~~D---lIITTGGtg~g~ 229 (312)
T PRK03604 160 VLVLSDSIAAGTKEDRSGKLIVEGLEEAG--FEVSHYTIIPD-----EPAEIAAAVAAWIAEGYA---LIITTGGTGLGP 229 (312)
T ss_pred EEEECCcCCCCcEEEhHHHHHHHHHHHCC--CEEEEEEEcCC-----CHHHHHHHHHHhhhCCCC---EEEECCCCCCCC
Confidence 55566643 23446777888899998 665433 2333 456666666655434556 89888775543
Q ss_pred -hHHH
Q 017815 111 -DMCG 114 (365)
Q Consensus 111 -D~ak 114 (365)
|.+.
T Consensus 230 ~D~tp 234 (312)
T PRK03604 230 RDVTP 234 (312)
T ss_pred CccHH
Confidence 4443
No 412
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=25.92 E-value=3.3e+02 Score=27.00 Aligned_cols=68 Identities=25% Similarity=0.213 Sum_probs=50.2
Q ss_pred EEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCC---CCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 37 VLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPD---GENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 37 ~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~---~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
+=+|+|.++... ..+.+.+.+.+.|. -++.+..+.+ .+++-+..-+++-.+++++.+.+ .=||-|||.
T Consensus 128 vGlvSDGGVHShidhl~allka~~erg~-~ei~vH~~tDGRDt~p~s~vgfLe~~l~fLr~~t~~---gkvAs~~GR 200 (531)
T KOG4513|consen 128 VGLVSDGGVHSHIDHLQALLKALAERGA-KEIRVHILTDGRDTLPGSSVGFLEADLDFLRKVTVD---GKVASGGGR 200 (531)
T ss_pred EEEecCCchhhhHHHHHHHHHHHHhcCC-ceEEEEEecCCccCCCCcchhhHHHHHHHHHHcccc---ceEeeccce
Confidence 457899998765 57777888887762 2333334443 45677777899999999998888 889999986
No 413
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=25.91 E-value=2e+02 Score=26.51 Aligned_cols=75 Identities=9% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCCCCceEEEEEeCCCCCC-CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH-HHHHHHHhhcCCcE
Q 017815 49 YLDKVTDALTRGNPNVSVENVILPDGENY-KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM-CGYAAASYLRGVSF 126 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~~~~e~~-~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~-ak~vA~~~~~g~p~ 126 (365)
+.+++++.+. ++ ..++++....+ ...+.+-+.+..+.+.-+. +.-+||||.|+++-. ++.+. .....++
T Consensus 9 Le~~L~~~fg-----Lk-~~~Vv~~~~~~~~~~~~l~~~aA~~L~~~l~-~~~~iGv~wG~Tl~~~~~~l~--~~~~~~~ 79 (255)
T PF04198_consen 9 LEEELKEKFG-----LK-EVIVVPSPSDDEDILESLGEAAAEYLSELLK-DGDVIGVGWGRTLYAVANHLP--PKSLPNV 79 (255)
T ss_dssp HHHHHHHHHT-----SS-EEEEESSSTTTHHHHHHHHHHHHHHHHHH---TTEEEEE-TSHHHHHHHHTS----SSSSCE
T ss_pred HHHHHHHHhC-----CC-EEEEecCCCChHHHHHHHHHHHHHHHHHhCC-CCCEEEEcchHHHHHHHHhcC--ccCCCCc
Confidence 4555555553 33 23556654431 2233344444444443333 335999999998864 33321 1234567
Q ss_pred EEeccc
Q 017815 127 IQIPTT 132 (365)
Q Consensus 127 i~IPTT 132 (365)
..||..
T Consensus 80 ~vV~l~ 85 (255)
T PF04198_consen 80 TVVPLI 85 (255)
T ss_dssp EEEESB
T ss_pred EEEECC
Confidence 888888
No 414
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=25.89 E-value=4e+02 Score=26.59 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=53.4
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-------CCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-------YKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-------~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
.+|++|+......+.+.+.+.+. ...| +.+.-++ ++.+. .|-+.+.+++.+.+++.++| +++||+-.
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~-~~~g--~~vvG~i-dd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id--~ViIa~p~ 198 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRN-PDLG--YRVVGFV-DDRPSDRVEVAGLPVLGKLDDLVELVRAHRVD--EVIIALPL 198 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhC-ccCC--eEEEEEE-eCCcccccccCCCcccCCHHHHHHHHHhCCCC--EEEEecCc
Confidence 57788888877655454444321 1223 4443222 22211 12233456677777888887 47788655
Q ss_pred chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 107 GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 107 Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
-+--.....+......|+++..+|..
T Consensus 199 ~~~~~~~~ll~~~~~~gv~V~~vP~~ 224 (445)
T TIGR03025 199 SEEARILELLLQLRDLGVDVRLVPDL 224 (445)
T ss_pred ccHHHHHHHHHHHHhcCCEEEEeCch
Confidence 44333444454445678999999987
No 415
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=25.85 E-value=4.9e+02 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=21.1
Q ss_pred cceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+-++|.+|||..+--.-...-.....+++|-|=+.
T Consensus 177 d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~ 211 (347)
T COG1171 177 DAVFVPVGGGGLISGIATALKALSPEIKVIGVEPE 211 (347)
T ss_pred CEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeC
Confidence 45899999999764332222223345777766544
No 416
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=25.79 E-value=2.2e+02 Score=23.56 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEec
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IP 130 (365)
-+.+.+++.+.+++.++| +++||+-.-.--.+-+.+......++++-.||
T Consensus 126 ~lg~~~~l~~~~~~~~id--~v~ial~~~~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 126 VLGDLDDLPELVREHDID--EVIIALPWSEEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp EE--GGGHHHHHHHHT----EEEE--TTS-HHHHHHHHHHHHTTT-EEEE--
T ss_pred eEcCHHHHHHHHHhCCCC--EEEEEcCccCHHHHHHHHHHHHhCCCEEEEeC
Confidence 346788888999999988 48899987766666666666666788887777
No 417
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=25.76 E-value=3.9e+02 Score=27.08 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=55.6
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCC---CCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPD---GENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~---~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
.+|++|+........+.+.+.+. ...| +++.-++-++ +.+.|-..+++++.+.+++.++| .++||+..-+--
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~-~~~g--~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~Id--eViIAip~~~~~ 217 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNE-PWLG--FEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIH--NVYIAMSMCDGA 217 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcC-ccCC--eEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCC--EEEEeCCCcchH
Confidence 46777777666544343333221 1123 4443322111 11122245567777777888877 599999877766
Q ss_pred hHHHHHHHHhhcCCcEEEeccc
Q 017815 111 DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++-..+......++++..+|..
T Consensus 218 ~l~ell~~~~~~~v~V~ivP~l 239 (463)
T PRK10124 218 RVKKLVRQLADTTCSVLLIPDV 239 (463)
T ss_pred HHHHHHHHHHHcCCeEEEecch
Confidence 6666665555678999999987
No 418
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=25.65 E-value=4.7e+02 Score=23.10 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +++.. ++. .. +.+...+..+.+...++| .||-.+.-..-+ .+......++|
T Consensus 14 ~~~~~~gi~~~~~~~g--~~~~~--~~~-~~--~~~~~~~~~~~l~~~~vd---giii~~~~~~~~---~~~~~~~~~ip 80 (268)
T cd01575 14 FADVLQGISDVLEAAG--YQLLL--GNT-GY--SPEREEELLRTLLSRRPA---GLILTGLEHTER---TRQLLRAAGIP 80 (268)
T ss_pred HHHHHHHHHHHHHHcC--CEEEE--ecC-CC--CchhHHHHHHHHHHcCCC---EEEEeCCCCCHH---HHHHHHhcCCC
Confidence 4446677778888888 66533 332 21 234556777777788888 888887443212 22223356999
Q ss_pred EEEe
Q 017815 126 FIQI 129 (365)
Q Consensus 126 ~i~I 129 (365)
++.+
T Consensus 81 vv~~ 84 (268)
T cd01575 81 VVEI 84 (268)
T ss_pred EEEE
Confidence 9987
No 419
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=25.62 E-value=4e+02 Score=24.89 Aligned_cols=85 Identities=8% Similarity=0.004 Sum_probs=48.4
Q ss_pred cchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCC-ceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~-i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
..++++.+ +-+++.++++..- +.+.+.+.+++.+.. ..+....++. .+ .+...+..++..++| .||
T Consensus 120 ~~~~~~~~-~w~~vavl~~~~~---~~~~l~~~~~~~~~~g~~v~~~~~~~----~~--d~~~~l~~i~~~~~d---~vv 186 (327)
T cd06382 120 YADIVKSF-NWKSFTIIYESAE---GLLRLQELLQAFGISGITITVRQLDD----DL--DYRPLLKEIKNSGDN---RII 186 (327)
T ss_pred HHHHHHhc-CCcEEEEEecChH---HHHHHHHHHHhhccCCCeEEEEEccC----Cc--cHHHHHHHHHhcCce---EEE
Confidence 34555554 3589999988753 445555666655410 1222222221 12 677788888888887 777
Q ss_pred EecCchHhhHHHHHHHHhhcC
Q 017815 103 ALGGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g 123 (365)
-.+.+ -|++.++-.+...|
T Consensus 187 ~~~~~--~~~~~~~~qa~~~g 205 (327)
T cd06382 187 IDCSA--DILIELLKQAQQVG 205 (327)
T ss_pred EECCH--HHHHHHHHHHHHhC
Confidence 66543 45666664444444
No 420
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=25.54 E-value=5.4e+02 Score=23.75 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCCCcceEEEec-CchHhhHHHHHHHHhhcCCcEEEec
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALG-GGVIGDMCGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiG-GGsv~D~ak~vA~~~~~g~p~i~IP 130 (365)
.-+...+.+...+.+.+|++|+|- +|..-++.+.+..+-..|.+.+.|-
T Consensus 103 d~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It 152 (257)
T cd05007 103 DEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIA 152 (257)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEE
Confidence 334455666667777788888875 5677777777766667899988884
No 421
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=25.45 E-value=3.9e+02 Score=26.91 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=28.6
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEE--------eCCCCCCCC-HHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVI--------LPDGENYKN-MDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~--------~~~~e~~~~-~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
.++...+.+.+.+.|++.| +++.++. |+...|+|+ .+++..+.+.+++.++| +.|++
T Consensus 179 ~G~~~~~~~~l~~~l~~lG--~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l~~~v~~~~ad---lGia~ 244 (456)
T PRK15414 179 NGAAGPVVDAIEARFKALG--APVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGAD---MGIAF 244 (456)
T ss_pred CCcchhhHHHHHHHHHhcC--CCeEEEEeecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCC---EEEEE
Confidence 3344445555544555555 3222221 122334454 34666666667776666 55555
No 422
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=25.41 E-value=4.2e+02 Score=24.95 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=47.7
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCC--------HHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCC
Q 017815 280 MSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMT--------VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYD 351 (365)
Q Consensus 280 l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~--------~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~ 351 (365)
++...|.-..+..+++..||+++++.-.....++ .=+|+..+.+ +..++++++++.- .++|+
T Consensus 96 la~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviH-------ePeLlILDEPFSG---LDPVN 165 (300)
T COG4152 96 LAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIH-------EPELLILDEPFSG---LDPVN 165 (300)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhc-------CCCEEEecCCccC---CChhh
Confidence 4444554445678899999999999876553221 1123333333 3347778776432 25899
Q ss_pred HHHHHHHHHHHhc
Q 017815 352 RKALDDTLYAFCK 364 (365)
Q Consensus 352 ~~~l~~~~~~~~~ 364 (365)
-+.|++++.++-+
T Consensus 166 ~elLk~~I~~lk~ 178 (300)
T COG4152 166 VELLKDAIFELKE 178 (300)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 423
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=25.23 E-value=5.8e+02 Score=24.06 Aligned_cols=82 Identities=18% Similarity=0.126 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+...-.+++.+.+.++| ++-. ++. ..|| +.=|.++-.++++.+.+.-.+|--+|+++|+ ++-|+...+-.+..
T Consensus 24 ~iD~~~l~~li~~l~~~G--v~Gi-~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~ 99 (303)
T PRK03620 24 SFDEAAYREHLEWLAPYG--AAAL-FAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAER 99 (303)
T ss_pred CcCHHHHHHHHHHHHHcC--CCEE-EECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHH
Confidence 343335566666676777 5432 222 2345 3556777778888777654444558999986 77777666655555
Q ss_pred cCCcEEEe
Q 017815 122 RGVSFIQI 129 (365)
Q Consensus 122 ~g~p~i~I 129 (365)
.|..-+.+
T Consensus 100 ~Gadav~~ 107 (303)
T PRK03620 100 AGADGILL 107 (303)
T ss_pred hCCCEEEE
Confidence 67776665
No 424
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.17 E-value=5e+02 Score=23.24 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +.+.+ +.. +. .+.+...+.++.+...++| .||..+...- .+...+...-..|+|
T Consensus 15 ~~~~~~g~~~~~~~~g--~~v~~--~~~-~~-~~~~~~~~~i~~l~~~~vd---giii~~~~~~-~~~~~l~~~~~~~ip 84 (271)
T cd06312 15 WTVVKNGAEDAAKDLG--VDVEY--RGP-ET-FDVADMARLIEAAIAAKPD---GIVVTIPDPD-ALDPAIKRAVAAGIP 84 (271)
T ss_pred HHHHHHHHHHHHHHhC--CEEEE--ECC-CC-CCHHHHHHHHHHHHHhCCC---EEEEeCCChH-HhHHHHHHHHHCCCe
Confidence 4446677777888887 66533 222 11 1445666777777788888 8887764321 012223223346899
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
++.+=..
T Consensus 85 vV~~~~~ 91 (271)
T cd06312 85 VISFNAG 91 (271)
T ss_pred EEEeCCC
Confidence 9998443
No 425
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.16 E-value=3.4e+02 Score=23.19 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=49.6
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCC---------------
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDR--------------- 97 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr--------------- 97 (365)
..++++|+++++---.-+=.+.+.|.+.| ++|.++.+.+.+ +.-+....-.+.+++.+...
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G--~~V~v~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 99 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRG--YNVTVYLVGPPE--KLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEP 99 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTT--CEEEEEEEESSS--STSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSC
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCC--CeEEEEEEeccc--cCCHHHHHHHHHHHhcCCcEeeccccchhhccccc
Confidence 36789999988632222222345567778 777665554433 34455666666666554321
Q ss_pred c----ceEEEecCchHh--hHHHHHHHHhhcCCcEEE--ecccc
Q 017815 98 R----CTFVALGGGVIG--DMCGYAAASYLRGVSFIQ--IPTTV 133 (365)
Q Consensus 98 ~----~~IIaiGGGsv~--D~ak~vA~~~~~g~p~i~--IPTTl 133 (365)
. |.|.++|-...+ .+...+...-..+.|.++ |||-+
T Consensus 100 ~dlIIDal~G~G~~~~l~~~~~~~i~~iN~~~~~viAiDiPSGl 143 (169)
T PF03853_consen 100 ADLIIDALFGTGFSGPLRGPIAELIDWINASRAPVIAIDIPSGL 143 (169)
T ss_dssp ESEEEEES-STTGGSCGSTCHHHHHHHHHHHCSEEEEESS-TTC
T ss_pred ccEEEEecccCCCCCCcCHHHHHHHHHHhccCCcEEEecCCCCc
Confidence 1 245566622222 244444433445777877 56665
No 426
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=24.97 E-value=3.6e+02 Score=28.57 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=48.6
Q ss_pred eEEEEEccCchHHHHHHH-HHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 36 KVLVVTNNTVAPLYLDKV-TDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v-~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
+|+|++...+-.+..-+| ...|+... |.+.++.+ ...+++.+..+.+. .... .||=||=|..+|+..
T Consensus 1 ~Vli~v~~dvDalcA~kiL~~Llk~d~--I~~~l~PV------~gy~el~~~~~~~~-~~~~---~vilIncGa~~dl~~ 68 (622)
T PF02724_consen 1 SVLILVALDVDALCACKILTSLLKSDN--IQYSLVPV------SGYSELERAYEELD-EDIK---SVILINCGATVDLEE 68 (622)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHHhcC--CCeeEEEe------CCHHHHHHHHHHHh-hhhc---eEEEEecCchhhHHH
Confidence 478888888877755554 44566665 55444332 36888888888883 3444 799999999999997
Q ss_pred HH
Q 017815 115 YA 116 (365)
Q Consensus 115 ~v 116 (365)
+.
T Consensus 69 ~l 70 (622)
T PF02724_consen 69 FL 70 (622)
T ss_pred Hh
Confidence 65
No 427
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=24.85 E-value=1.6e+02 Score=22.83 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=33.8
Q ss_pred EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEec
Q 017815 69 VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 69 ~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IP 130 (365)
+-+.....+|..+..++++..+++ .|+ +.|++|--+ + .....+.|.+..+
T Consensus 21 IgYF~~~~~~eY~~f~kvA~~lr~-dC~---F~v~~G~~~-----~---~~~~~~~~~i~fr 70 (91)
T cd03070 21 IGYFESKDSDEYDNFRKVANILRD-DCS---FLVGFGDVT-----K---PERPPGDNIIYFP 70 (91)
T ss_pred EEEEcCCCChhHHHHHHHHHHHhh-cCe---EEEEecccc-----c---cccCCCCCeEEEC
Confidence 444555667899999999988875 678 999998422 1 1234556665554
No 428
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=24.67 E-value=5.8e+02 Score=23.85 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=21.2
Q ss_pred cceEEEecCchHh-hHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIG-DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~-D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+.+|||..+ =++++... +..+++++.|-+.
T Consensus 165 d~iv~~vG~Gg~~~G~~~~~~~-~~~~~~vi~Ve~~ 199 (299)
T TIGR01136 165 DHFVAGVGTGGTITGVGRYLKE-QNPNIKIVAVEPA 199 (299)
T ss_pred CEEEEcCchhHHHHHHHHHHHH-hCCCCEEEEEecC
Confidence 4588889988876 44444332 3356777777554
No 429
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.53 E-value=3.4e+02 Score=21.62 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHcCCC
Q 017815 81 DTLMKVFDKAIESRLD 96 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~d 96 (365)
....++++.+++.|+.
T Consensus 42 ~~a~~la~~LR~~gi~ 57 (121)
T cd00858 42 EIAKEISEELRELGFS 57 (121)
T ss_pred HHHHHHHHHHHHCCCE
Confidence 3444444445444444
No 430
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=24.53 E-value=6.1e+02 Score=24.05 Aligned_cols=89 Identities=9% Similarity=0.023 Sum_probs=51.4
Q ss_pred CceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 34 GKKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
.+++-+|... ..+..+.+-+.+.+++.| +++.+ +. .....+.+...+.++.+...++| .||-.+.. .-
T Consensus 46 t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G--~~l~i--~~-~~~~~~~~~q~~~i~~l~~~~vd---gIIl~~~~-~~ 116 (343)
T PRK10936 46 AWKLCALYPHLKDSYWLSVNYGMVEEAKRLG--VDLKV--LE-AGGYYNLAKQQQQLEQCVAWGAD---AILLGAVT-PD 116 (343)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHHHHhC--CEEEE--Ec-CCCCCCHHHHHHHHHHHHHhCCC---EEEEeCCC-hH
Confidence 3556555533 233345667777788888 65432 32 22123455666778888888888 77766533 22
Q ss_pred hHHHHHHHHhhcCCcEEEeccc
Q 017815 111 DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++...+ .....|+|++.+-+.
T Consensus 117 ~~~~~l-~~~~~giPvV~~~~~ 137 (343)
T PRK10936 117 GLNPDL-ELQAANIPVIALVNG 137 (343)
T ss_pred HhHHHH-HHHHCCCCEEEecCC
Confidence 322333 234568999988433
No 431
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.48 E-value=5.5e+02 Score=23.50 Aligned_cols=97 Identities=7% Similarity=-0.020 Sum_probs=56.6
Q ss_pred hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-----CCCHHHHHHHHHHHHHcCCCCcce
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-----YKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-----~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
+-|+.+ +.+|+-|+|- +.+...+++.+.|.++| |+|..+.-.+.+. .-+.+.+.+.+..+...++| .
T Consensus 113 ~AL~al-g~~RIalvTP--Y~~~v~~~~~~~l~~~G--~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aD---A 184 (239)
T TIGR02990 113 DGLAAL-GVRRISLLTP--YTPETSRPMAQYFAVRG--FEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDAD---A 184 (239)
T ss_pred HHHHHc-CCCEEEEECC--CcHHHHHHHHHHHHhCC--cEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCC---E
Confidence 345555 3688888876 34457888999999999 8875542222211 23455666665555344444 6
Q ss_pred EEEecCc-hHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 101 FVALGGG-VIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 101 IIaiGGG-sv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
|+-.+.+ ...|+..-+ --..|+|++..-..
T Consensus 185 ifisCTnLrt~~vi~~l--E~~lGkPVlsSNqa 215 (239)
T TIGR02990 185 LFLSCTALRAATCAQRI--EQAIGKPVVTSNQA 215 (239)
T ss_pred EEEeCCCchhHHHHHHH--HHHHCCCEEEHHHH
Confidence 6665443 344554433 23468998875444
No 432
>PRK12757 cell division protein FtsN; Provisional
Probab=24.35 E-value=5.4e+02 Score=24.03 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=46.4
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEE------EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENV------ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~------~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
.+.+|=++..-...-.+++.+.|...| +...+. .+- .-+..+.+..+++.+.++..|++ +.++++-||
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G--~~a~I~~~gg~yRVr-VGPf~sr~~A~~~~~rLk~~G~~-~~iiva~gg 256 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAG--IESRITTGGGWNRVV-LGPYNSKAAADKMLQRLKGAGHS-GCIPLAAGG 256 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcC--CceEEeecCCEEEEE-eCCCCCHHHHHHHHHHHHHcCCC-CeEEeccCC
Confidence 455665666555556788888887777 543221 111 23567899999999999999886 467778776
No 433
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=24.22 E-value=3.3e+02 Score=22.29 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=36.6
Q ss_pred eEEEEEccC----chHHHHHHHHHHHhhCCCCceEEEEEeCCCC-C---------CCCHHHHHHHHHHHHHc
Q 017815 36 KVLVVTNNT----VAPLYLDKVTDALTRGNPNVSVENVILPDGE-N---------YKNMDTLMKVFDKAIES 93 (365)
Q Consensus 36 ~~livtd~~----~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e-~---------~~~~~~v~~~~~~~~~~ 93 (365)
|+++|.+.. ....+.+.+.+.+++.| +++.++.+.+-. | +..-+.+.++.+.+++.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~a 71 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEA 71 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHS
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecC
Confidence 566666643 23347888899998888 888777665430 0 12346778888888764
No 434
>PRK09224 threonine dehydratase; Reviewed
Probab=24.06 E-value=5.4e+02 Score=26.44 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=22.3
Q ss_pred cceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+++++|||..+= +++++.. ....+++|.|-..
T Consensus 171 D~vvvpvGgGGliaGia~~lk~-~~p~~kVigVe~~ 205 (504)
T PRK09224 171 DAVFVPVGGGGLIAGVAAYIKQ-LRPEIKVIGVEPE 205 (504)
T ss_pred CEEEEecChhHHHHHHHHHHHH-hCCCCEEEEEEEC
Confidence 46999999998764 4444432 3456778877654
No 435
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.04 E-value=4.3e+02 Score=24.43 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=39.6
Q ss_pred EEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHH
Q 017815 37 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 116 (365)
Q Consensus 37 ~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~v 116 (365)
+.++..+. .....+++.+.|.+.| +.+.+. +..+ . ...++| +||++||=-++--| +
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~l~~~~--~~~~~~--~~~~------------~--~~~~~d---~vi~iGGDGT~L~a--~ 58 (256)
T PRK14075 3 LGIFYREE-KEKEAKFLKEKISKEH--EVVEFC--EASA------------S--GKVTAD---LIIVVGGDGTVLKA--A 58 (256)
T ss_pred EEEEeCcc-HHHHHHHHHHHHHHcC--CeeEee--cccc------------c--ccCCCC---EEEEECCcHHHHHH--H
Confidence 34444444 4457888888898887 554321 1111 0 123445 99999996655433 1
Q ss_pred HHHhhcCCcEEEeccc
Q 017815 117 AASYLRGVSFIQIPTT 132 (365)
Q Consensus 117 A~~~~~g~p~i~IPTT 132 (365)
..+ ++|++-|.+.
T Consensus 59 -~~~--~~Pilgin~G 71 (256)
T PRK14075 59 -KKV--GTPLVGFKAG 71 (256)
T ss_pred -HHc--CCCEEEEeCC
Confidence 112 8888877644
No 436
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=23.76 E-value=5.1e+02 Score=23.46 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=46.7
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE---EecCchHhhH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV---ALGGGVIGDM 112 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II---aiGGGsv~D~ 112 (365)
+++||.|... +.+.+...|...| +++.. +.++ .+..+.+... +| +|| .+.+.+-.++
T Consensus 2 ~ILiveDd~~---i~~~l~~~L~~~g--~~v~~--~~~~---------~~a~~~~~~~-~d---lviLD~~lP~~dG~~~ 61 (229)
T COG0745 2 RILLVEDDPE---LAELLKEYLEEEG--YEVDV--AADG---------EEALEAAREQ-PD---LVLLDLMLPDLDGLEL 61 (229)
T ss_pred eEEEEcCCHH---HHHHHHHHHHHCC--CEEEE--ECCH---------HHHHHHHhcC-CC---EEEEECCCCCCCHHHH
Confidence 6888888754 5677788899998 77643 3322 4445555555 66 443 4577788888
Q ss_pred HHHHHHHhhcCCcEEEe
Q 017815 113 CGYAAASYLRGVSFIQI 129 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~I 129 (365)
++-+-..-....|++.+
T Consensus 62 ~~~iR~~~~~~~PIi~L 78 (229)
T COG0745 62 CRRLRAKKGSGPPIIVL 78 (229)
T ss_pred HHHHHhhcCCCCcEEEE
Confidence 88774332244566665
No 437
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=23.72 E-value=1.5e+02 Score=29.35 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=27.8
Q ss_pred HHHHHHHc--CCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 86 VFDKAIES--RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 86 ~~~~~~~~--~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
....++++ ++| +|+|+||=. -+.+++..|+|++.|-|--
T Consensus 83 ~~~~~~~~~~~p~---~v~~~Gg~v------~~~aA~~~~~p~~~~~~~e 123 (396)
T TIGR03492 83 QWRALRKWAKKGD---LIVAVGDIV------PLLFAWLSGKPYAFVGTAK 123 (396)
T ss_pred HHHHHHHHhhcCC---EEEEECcHH------HHHHHHHcCCCceEEEeec
Confidence 33455666 666 999999866 2344578899999987764
No 438
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=23.60 E-value=5.8e+02 Score=23.41 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +.+.+ +. .....+.+.-.+.++.+...++| .||-.+.. .-+....+... ..++|
T Consensus 14 ~~~~~~gi~~~a~~~g--~~v~~--~~-~~~~~~~~~~~~~i~~l~~~~vD---giIi~~~~-~~~~~~~l~~~-~~~iP 83 (295)
T TIGR02955 14 WLSINYGMVEQAKHLG--VELKV--LE-AGGYPNLDKQLAQIEQCKSWGAD---AILLGTVS-PEALNHDLAQL-TKSIP 83 (295)
T ss_pred HHHHHHHHHHHHHHhC--CEEEE--Ec-CCCCCCHHHHHHHHHHHHHcCCC---EEEEecCC-hhhhhHHHHHH-hcCCC
Confidence 3345566777778888 66533 22 22112445556788888888988 77766422 22223333322 35899
Q ss_pred EEEe
Q 017815 126 FIQI 129 (365)
Q Consensus 126 ~i~I 129 (365)
+|.+
T Consensus 84 vV~~ 87 (295)
T TIGR02955 84 VFAL 87 (295)
T ss_pred EEEE
Confidence 9876
No 439
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=23.58 E-value=5.8e+02 Score=23.45 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=45.3
Q ss_pred hhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
+++.+. +.+|+.++.+...+. ...+.+.+.+++.| +++.. ..++.++. + ....+..+++.++| +|+.
T Consensus 126 ~~l~~~-g~~~vail~~~~~~~~~~~~~~~~~~~~~G--~~v~~~~~~~~~~~--d---~~~~~~~l~~~~pd---aIi~ 194 (312)
T cd06333 126 ADMKKR-GVKTVAFIGFSDAYGESGLKELKALAPKYG--IEVVADERYGRTDT--S---VTAQLLKIRAARPD---AVLI 194 (312)
T ss_pred HHHHHc-CCCEEEEEecCcHHHHHHHHHHHHHHHHcC--CEEEEEEeeCCCCc--C---HHHHHHHHHhCCCC---EEEE
Confidence 455554 368888887765433 35667788888888 65532 22332221 2 33344455555666 8888
Q ss_pred ecCch-HhhHHHHH
Q 017815 104 LGGGV-IGDMCGYA 116 (365)
Q Consensus 104 iGGGs-v~D~ak~v 116 (365)
.+.+. ..-+.+.+
T Consensus 195 ~~~~~~~~~~~~~l 208 (312)
T cd06333 195 WGSGTPAALPAKNL 208 (312)
T ss_pred ecCCcHHHHHHHHH
Confidence 87543 33444443
No 440
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.47 E-value=4.5e+02 Score=22.12 Aligned_cols=91 Identities=21% Similarity=0.316 Sum_probs=59.6
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceE-----EEEEeC-CCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSV-----ENVILP-DGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v-----~~~~~~-~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
.+||++|+-|+.-.. ++.+.+.++..| -+| ++|++. .|- =++++=.++.+...++|.. ++||-+ |
T Consensus 4 ~gkKviiiGdRDGiP--gpAie~c~~~~g--aevvfs~TeCFVctaaga--MDLEnQ~rvk~~aEk~g~e--nlvVvl-G 74 (150)
T PF04723_consen 4 EGKKVIIIGDRDGIP--GPAIEECVKTAG--AEVVFSSTECFVCTAAGA--MDLENQQRVKDLAEKYGAE--NLVVVL-G 74 (150)
T ss_pred CCcEEEEEecCCCCC--cHHHHHHHHhcC--ceEEEEeeeEEEeccccc--ccHHHHHHHHHHHHhcCCc--cEEEEe-c
Confidence 379999999976433 566667777777 333 233332 232 3788888888888888876 355555 5
Q ss_pred chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 107 GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 107 Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++=-..++..|-+...|-|-.+=|.+
T Consensus 75 ~aeaE~a~laAETVt~GDPTfaGPLA 100 (150)
T PF04723_consen 75 AAEAEAAGLAAETVTNGDPTFAGPLA 100 (150)
T ss_pred CCChhhhhhhhhhhccCCCccccccc
Confidence 56667777777666677765555544
No 441
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=23.45 E-value=3.9e+02 Score=24.87 Aligned_cols=82 Identities=23% Similarity=0.151 Sum_probs=44.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
..|+.|+.-++.... ....+.|+++| +++..+.+.+... ....+ .++| .||-.||.+..|.-
T Consensus 3 ~~kvaVl~~pG~n~d--~e~~~Al~~aG--~~v~~v~~~~~~~---------~~~~l--~~~D---gLvipGGfs~gD~l 64 (261)
T PRK01175 3 SIRVAVLRMEGTNCE--DETVKAFRRLG--VEPEYVHINDLAA---------ERKSV--SDYD---CLVIPGGFSAGDYI 64 (261)
T ss_pred CCEEEEEeCCCCCCH--HHHHHHHHHCC--CcEEEEeeccccc---------cccch--hhCC---EEEECCCCCccccc
Confidence 357888888776532 23456777888 6765544332100 00011 2344 77777765655421
Q ss_pred ---------------HHHHHHhhcCCcEEEecccc
Q 017815 114 ---------------GYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 114 ---------------k~vA~~~~~g~p~i~IPTTl 133 (365)
+.+.....++.|+..|+-..
T Consensus 65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~ 99 (261)
T PRK01175 65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGF 99 (261)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHH
Confidence 22222345788999887654
No 442
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.39 E-value=5.3e+02 Score=22.95 Aligned_cols=76 Identities=9% Similarity=0.160 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhh--CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcC
Q 017815 46 APLYLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 46 ~~~~~~~v~~~L~~--~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g 123 (365)
+..+.+.+.+.+++ .| +.+ +.+. .+. +.+...+..+.+...++| .||-.+.-.- -....+......+
T Consensus 14 ~~~~~~gi~~~~~~~~~~--~~~--~~~~-~~~--~~~~~~~~i~~~~~~~~d---giIi~~~~~~-~~~~~i~~~~~~~ 82 (271)
T cd06321 14 FVALAKGAEAAAKKLNPG--VKV--TVVS-ADY--DLNKQVSQIDNFIAAKVD---LILLNAVDSK-GIAPAVKRAQAAG 82 (271)
T ss_pred HHHHHHHHHHHHHHhCCC--eEE--EEcc-CCC--CHHHHHHHHHHHHHhCCC---EEEEeCCChh-HhHHHHHHHHHCC
Confidence 34466667777777 54 443 3332 222 456667778888888888 7776543211 0112232234578
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|+|.+-..
T Consensus 83 ipvv~~~~~ 91 (271)
T cd06321 83 IVVVAVDVA 91 (271)
T ss_pred CeEEEecCC
Confidence 999999654
No 443
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=23.30 E-value=1.2e+02 Score=25.72 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=24.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHH
Q 017815 73 DGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAA 117 (365)
Q Consensus 73 ~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA 117 (365)
..+..+..+..+++.+++.+..++ ||+||| .-.+.-+...
T Consensus 42 ~~~~~~~~~~~~~l~~~i~~~kP~----vI~v~g-~~~~s~~l~~ 81 (150)
T PF14639_consen 42 ERDRERKEEDMERLKKFIEKHKPD----VIAVGG-NSRESRKLYD 81 (150)
T ss_dssp TT-SS-SHHHHHHHHHHHHHH--S----EEEE---SSTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCe----EEEEcC-CChhHHHHHH
Confidence 344455677888899999999998 899966 4456665543
No 444
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=23.18 E-value=5.3e+02 Score=22.83 Aligned_cols=76 Identities=13% Similarity=-0.005 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch-HhhHHHHHHHHhhcC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IGDMCGYAAASYLRG 123 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs-v~D~ak~vA~~~~~g 123 (365)
.+..+.+.+.+.+++.| +++.++..+ +. ..+...++.+.+...++| .||....-. ..+..+. .-..+
T Consensus 13 ~~~~~~~gi~~~~~~~g--~~~~~~~~~--~~--~~~~~~~~~~~l~~~~vd---giii~~~~~~~~~~~~~---~~~~~ 80 (270)
T cd01545 13 YVSEIQLGALDACRDTG--YQLVIEPCD--SG--SPDLAERVRALLQRSRVD---GVILTPPLSDNPELLDL---LDEAG 80 (270)
T ss_pred cHHHHHHHHHHHHHhCC--CeEEEEeCC--CC--chHHHHHHHHHHHHCCCC---EEEEeCCCCCccHHHHH---HHhcC
Confidence 34456777888888888 665433222 11 123667777777788888 888876532 2222222 23478
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|++.+-..
T Consensus 81 ipvv~i~~~ 89 (270)
T cd01545 81 VPYVRIAPG 89 (270)
T ss_pred CCEEEEecC
Confidence 999998655
No 445
>PRK13948 shikimate kinase; Provisional
Probab=23.11 E-value=63 Score=28.34 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=13.9
Q ss_pred ceEEEecCchHhhHHHH
Q 017815 99 CTFVALGGGVIGDMCGY 115 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~ 115 (365)
..||+.|||.+++-.-.
T Consensus 81 ~~VIa~GgG~v~~~~n~ 97 (182)
T PRK13948 81 YAVISLGGGTFMHEENR 97 (182)
T ss_pred CeEEECCCcEEcCHHHH
Confidence 48999999999877643
No 446
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.06 E-value=3.9e+02 Score=22.78 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=29.9
Q ss_pred cCCCCcceEEEec-CchHhhHHHHHHHHhhcCCcEEEecc
Q 017815 93 SRLDRRCTFVALG-GGVIGDMCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 93 ~~~dr~~~IIaiG-GGsv~D~ak~vA~~~~~g~p~i~IPT 131 (365)
..++++|++|++- +|..-|+...+..+-.+|.|.|.|..
T Consensus 97 ~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~ 136 (177)
T cd05006 97 ALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTG 136 (177)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3567778888887 67777888777666778999999843
No 447
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=23.04 E-value=4.9e+02 Score=23.32 Aligned_cols=65 Identities=14% Similarity=-0.004 Sum_probs=39.3
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI 109 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv 109 (365)
.+++++++.+.... +.+.+.|.+.| +.|....++..++.+.. -.++.+.+.+.++| +|.+-.++.
T Consensus 117 ~~~~vL~~rg~~~r----~~l~~~L~~~G--~~v~~~~vY~~~~~~~~--~~~~~~~l~~~~~d----~i~f~S~~~ 181 (240)
T PRK09189 117 PTARLLYLAGRPRA----PVFEDRLAAAG--IPFRVAECYDMLPVMYS--PATLSAILGGAPFD----AVLLYSRVA 181 (240)
T ss_pred CCCcEEEeccCccc----chhHHHHHhCC--CeeEEEEEEEeecCCCC--hHHHHHHHhcCCCC----EEEEeCHHH
Confidence 46889999987653 44556677888 66655544433332222 23455666666777 666666664
No 448
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=23.01 E-value=2.5e+02 Score=20.88 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
.+...++.+.+++.|+. +.+-.++.+. +|-+..+-..|+||+.|
T Consensus 15 ~~~a~~l~~~L~~~gi~---v~~d~~~~~~---~k~~~~a~~~g~p~~ii 58 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIR---VELDDSDKSL---GKQIKYADKLGIPFIII 58 (94)
T ss_dssp HHHHHHHHHHHHHTTSE---EEEESSSSTH---HHHHHHHHHTTESEEEE
T ss_pred HHHHHHHHHHHHHCCCE---EEEECCCCch---hHHHHHHhhcCCeEEEE
Confidence 33455566666666655 5555544443 23333334556666665
No 449
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=22.97 E-value=6.9e+02 Score=24.10 Aligned_cols=83 Identities=13% Similarity=0.030 Sum_probs=47.9
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
..+++.+. -+++.+++|......-.+.+.+.+++.| +.+....++ +....+...+..++..+.+ .||-.
T Consensus 131 ~~~~~~~~-wk~vaily~~~~g~~~l~~~~~~~~~~g--~~v~~~~~~-----~~~~d~~~~L~~ik~~~~~---~iil~ 199 (384)
T cd06393 131 LDLVQYLK-WRSATVVYDDSTGLIRLQELIMAPSRYN--IRLKIRQLP-----TDSDDARPLLKEMKRGREF---RIIFD 199 (384)
T ss_pred HHHHHHcC-CcEEEEEEeCchhHHHHHHHHHhhhccC--ceEEEEECC-----CCchHHHHHHHHHhhcCce---EEEEE
Confidence 34444443 6899999987642223356666677767 554322222 1335777888888877665 55554
Q ss_pred cCchHhhHHHHHHHHh
Q 017815 105 GGGVIGDMCGYAAASY 120 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~ 120 (365)
+ ..-+++.++-.+.
T Consensus 200 ~--~~~~~~~il~qa~ 213 (384)
T cd06393 200 C--SHQMAAQILKQAM 213 (384)
T ss_pred C--CHHHHHHHHHHHH
Confidence 4 3466666554333
No 450
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=22.96 E-value=2.7e+02 Score=26.98 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=41.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC--CCCH---HHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN--YKNM---DTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~--~~~~---~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
|-.++|.+-+. +.+.+.|+..| ++...+- ..+.. .|-. ....++.+.++++++| ++|+.|+
T Consensus 27 GheV~it~R~~------~~~~~LL~~yg--~~y~~iG-~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pD---v~is~~s-- 92 (335)
T PF04007_consen 27 GHEVLITARDK------DETEELLDLYG--IDYIVIG-KHGDSLYGKLLESIERQYKLLKLIKKFKPD---VAISFGS-- 92 (335)
T ss_pred CCEEEEEEecc------chHHHHHHHcC--CCeEEEc-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCC---EEEecCc--
Confidence 44666666542 34455666777 6654331 11211 1222 2334556666677777 7776554
Q ss_pred HhhHHHHHHHHhhcCCcEEEec
Q 017815 109 IGDMCGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IP 130 (365)
.|++.. ++..|+|.|.+-
T Consensus 93 -~~a~~v---a~~lgiP~I~f~ 110 (335)
T PF04007_consen 93 -PEAARV---AFGLGIPSIVFN 110 (335)
T ss_pred -HHHHHH---HHHhCCCeEEEe
Confidence 344432 345688877663
No 451
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.93 E-value=5.4e+02 Score=22.82 Aligned_cols=76 Identities=9% Similarity=0.130 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+.+.| +++. +.+ .+. +.+.-.+.++.+...++| .||..+.... ...+.+......|+|
T Consensus 14 ~~~~~~~i~~~~~~~g--~~~~--i~~-~~~--~~~~~~~~~~~~~~~~vd---giii~~~~~~-~~~~~~~~~~~~~ip 82 (267)
T cd06322 14 YIELANAMKEEAKKQK--VNLI--VSI-ANQ--DLNKQLSDVEDFITKKVD---AIVLSPVDSK-GIRAAIAKAKKAGIP 82 (267)
T ss_pred HHHHHHHHHHHHHhcC--CEEE--Eec-CCC--CHHHHHHHHHHHHHcCCC---EEEEcCCChh-hhHHHHHHHHHCCCC
Confidence 4446777788888888 6653 222 222 345566667777788888 8887665321 112223323346899
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
+|.+-+.
T Consensus 83 vV~~~~~ 89 (267)
T cd06322 83 VITVDIA 89 (267)
T ss_pred EEEEccc
Confidence 9999654
No 452
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=22.87 E-value=93 Score=33.08 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=47.3
Q ss_pred ecccchhhhhccCCceEEEEEccCchHHHHHHHHHHH--hhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCc
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDAL--TRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRR 98 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L--~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~ 98 (365)
+....++.+....+--.+|=-.+.+.+..++++...- -++| +. ++|+ .+. .++++++..+++++.|..
T Consensus 117 LSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~ag--Vp----vVPG-Tpg-Pitt~~EA~eF~k~yG~P-- 186 (1176)
T KOG0369|consen 117 LSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAG--VP----VVPG-TPG-PITTVEEALEFVKEYGLP-- 186 (1176)
T ss_pred cccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcC--CC----ccCC-CCC-CcccHHHHHHHHHhcCCc--
Confidence 3344455444332233444444567777888886643 2455 33 2443 332 578999999999999998
Q ss_pred ceEE--EecCch
Q 017815 99 CTFV--ALGGGV 108 (365)
Q Consensus 99 ~~II--aiGGGs 108 (365)
+|+ |.|||.
T Consensus 187 -vI~KAAyGGGG 197 (1176)
T KOG0369|consen 187 -VIIKAAYGGGG 197 (1176)
T ss_pred -EEEeecccCCC
Confidence 776 677763
No 453
>PRK08639 threonine dehydratase; Validated
Probab=22.86 E-value=5.1e+02 Score=25.78 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
..++++++.+.+ +-+.+|+++|||..+- +++++.. ....++++.|-..
T Consensus 167 g~EI~eq~~~~~-~~D~vv~~vG~GG~~aGva~~~k~-~~p~~~vigVep~ 215 (420)
T PRK08639 167 AVEILEQLEKEG-SPDYVFVPVGGGGLISGVTTYLKE-RSPKTKIIGVEPA 215 (420)
T ss_pred HHHHHHhccccC-CCCEEEEecChhHHHHHHHHHHHH-hCCCCEEEEEEEC
Confidence 455555554221 1245899999987653 3433321 2356788887443
No 454
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=22.82 E-value=98 Score=30.28 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHh-----------------hHHHHHHHHhhcCCcEEE
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIG-----------------DMCGYAAASYLRGVSFIQ 128 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~-----------------D~ak~vA~~~~~g~p~i~ 128 (365)
+.+..|.+.|+|- +.||||+||++ |++++. -..++|+|+
T Consensus 161 e~a~~L~~aGad~--vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a---~~~~v~iIA 216 (352)
T PF00478_consen 161 EGAKDLIDAGADA--VKVGIGPGSICTTREVTGVGVPQLTAVYECAEAA---RDYGVPIIA 216 (352)
T ss_dssp HHHHHHHHTT-SE--EEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHH---HCTTSEEEE
T ss_pred HHHHHHHHcCCCE--EEEeccCCcccccccccccCCcHHHHHHHHHHHh---hhccCceee
No 455
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=22.77 E-value=3.9e+02 Score=21.19 Aligned_cols=50 Identities=20% Similarity=0.058 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCCc-eEEEEEeCCCCCCC--CHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 50 LDKVTDALTRGNPNV-SVENVILPDGENYK--NMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 50 ~~~v~~~L~~~g~~i-~v~~~~~~~~e~~~--~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
.++..+.++..| + ++..+-++++.-.. ..+.+..+.+.+++.+++ .|+.-
T Consensus 55 ~~E~~~a~~~lG--v~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~---~V~t~ 107 (128)
T PF02585_consen 55 RAEARAAAEILG--VENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPD---VVFTP 107 (128)
T ss_dssp HHHHHHHHHHCT---EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ES---EEEEE
T ss_pred HHHHHHHHHHcC--CceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCC---EEEEC
Confidence 344555677777 6 66666778776644 345566677777778777 88876
No 456
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.73 E-value=5.4e+02 Score=22.81 Aligned_cols=74 Identities=12% Similarity=0.012 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++.+ +. .+. +.+...+.++.+...++| .||-.+--...+.- .....++
T Consensus 13 ~~~~~~~~i~~~~~~~g--~~~~~--~~-~~~--~~~~~~~~i~~l~~~~~d---giii~~~~~~~~~~----~~~~~~i 78 (263)
T cd06280 13 FFTAVSRAVEDAAYRAG--LRVIL--CN-TDE--DPEKEAMYLELMEEERVT---GVIFAPTRATLRRL----AELRLSF 78 (263)
T ss_pred cHHHHHHHHHHHHHHCC--CEEEE--Ee-CCC--CHHHHHHHHHHHHhCCCC---EEEEeCCCCCchHH----HHHhcCC
Confidence 44557788888888888 66543 22 222 345566777888888888 88877642222211 1224589
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+=+.
T Consensus 79 PvV~~~~~ 86 (263)
T cd06280 79 PVVLIDRA 86 (263)
T ss_pred CEEEECCC
Confidence 99998655
No 457
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=22.68 E-value=6e+02 Score=23.28 Aligned_cols=103 Identities=12% Similarity=-0.034 Sum_probs=50.3
Q ss_pred eeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCc
Q 017815 19 LLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRR 98 (365)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~ 98 (365)
..+....++++.+. -+++.++++..-+..-.+.+.+.....+ ..+....++.+ .+...+.+..+++.+.+
T Consensus 118 ~~~~a~~~~l~~~~-w~~v~iiy~~~~~~~~l~~~~~~~~~~~--~~v~~~~~~~~-----~~~~~~~l~~l~~~~~~-- 187 (328)
T cd06351 118 DLADALLDLLEYYN-WTKFAIIYDSDEGLSRLQELLDESGIKG--IQVTVRRLDLD-----DDNYRQLLKELKRSESR-- 187 (328)
T ss_pred HHHHHHHHHHHHcC-CcEEEEEEeCchHHHHHHHHHHhhcccC--ceEEEEEecCC-----chhHHHHHHHHhhcccc--
Confidence 33444466666664 5889999997753332333333332222 22332233322 22677788888877663
Q ss_pred ceEEEecCchHhhHHHHHHHHhhc---CCcEEEecccc
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLR---GVSFIQIPTTV 133 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~---g~p~i~IPTTl 133 (365)
.+||.... .-++..++..+... +-.+.-|=|++
T Consensus 188 ~vil~~~~--~~~~~~~l~~a~~~gm~~~~~~~i~~~~ 223 (328)
T cd06351 188 RIILDCSS--EEEAKEILEQAVELGMMGYGYHWILTNL 223 (328)
T ss_pred eEEEECCc--HHHHHHHHHHHHHhccccCCcEEEEecC
Confidence 15554332 23333333333322 33455555553
No 458
>PLN02735 carbamoyl-phosphate synthase
Probab=22.57 E-value=1.9e+02 Score=32.89 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCceEEEEEeCCCCC-CCCHH----------HHHHHHHHHHHcCCCCcceEE-EecCchHhhHHHHH
Q 017815 52 KVTDALTRGNPNVSVENVILPDGEN-YKNMD----------TLMKVFDKAIESRLDRRCTFV-ALGGGVIGDMCGYA 116 (365)
Q Consensus 52 ~v~~~L~~~g~~i~v~~~~~~~~e~-~~~~~----------~v~~~~~~~~~~~~dr~~~II-aiGGGsv~D~ak~v 116 (365)
.+...|++.| +++..+.. +.+. ..+.+ +++.+++.+++.++| .|| .+||-..+.+++.+
T Consensus 599 ~~~~alr~~G--~~tI~v~~-npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d---~Vi~~~Ggq~~l~la~~l 669 (1102)
T PLN02735 599 HASFALQDAG--YETIMMNS-NPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPD---GIIVQFGGQTPLKLALPI 669 (1102)
T ss_pred HHHHHHHHcC--CeEEEEeC-CCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCC---EEEECCCchHHHHHHHHH
Confidence 3456788889 77643322 2222 21222 578888889999998 777 68888877766644
No 459
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.50 E-value=5.5e+02 Score=22.81 Aligned_cols=75 Identities=7% Similarity=-0.032 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+.+.| +++.++. .+ .+.+.-.+.++.+...++| .||-.+--.--+. +......++
T Consensus 13 ~~~~~~~gi~~~~~~~g--y~v~~~~-~~----~~~~~~~~~i~~~~~~~~d---giii~~~~~~~~~---~~~~~~~~~ 79 (269)
T cd06293 13 FFAELADAVEEEADARG--LSLVLCA-TR----NRPERELTYLRWLDTNHVD---GLIFVTNRPDDGA---LAKLINSYG 79 (269)
T ss_pred cHHHHHHHHHHHHHHCC--CEEEEEe-CC----CCHHHHHHHHHHHHHCCCC---EEEEeCCCCCHHH---HHHHHhcCC
Confidence 34457778888888888 7764432 22 1445677788888888998 8887763211121 222234689
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+=..
T Consensus 80 pvV~i~~~ 87 (269)
T cd06293 80 NIVLVDED 87 (269)
T ss_pred CEEEECCC
Confidence 99998654
No 460
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.43 E-value=3.4e+02 Score=27.09 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
.++.+.+++..+| ++|+.+||.....++ +.|+|++.+
T Consensus 363 ~e~~~~l~~~~pD---l~i~~~~~~~~~~~~------~~gip~~~~ 399 (426)
T cd01972 363 YQFYNLLKRVKPD---FIIFRHGGLFPDATV------YLGIPVVPL 399 (426)
T ss_pred HHHHHHHHHhCCC---EEEEcCCCccHHHHH------hcCCCEEec
Confidence 3566667777777 888888886665553 368888777
No 461
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.34 E-value=3.8e+02 Score=20.84 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=42.5
Q ss_pred eEEEEEccC-chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC--chHhhH
Q 017815 36 KVLVVTNNT-VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG--GVIGDM 112 (365)
Q Consensus 36 ~~livtd~~-~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG--Gsv~D~ 112 (365)
|+++.+-+. ....-...+...|+++| +++..+ +. . .+. +++.+.+++.++| +|++.. +...+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G--~~v~~~--d~-~--~~~---~~l~~~~~~~~pd----~V~iS~~~~~~~~~ 67 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAG--HEVDIL--DA-N--VPP---EELVEALRAERPD----VVGISVSMTPNLPE 67 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTT--BEEEEE--ES-S--B-H---HHHHHHHHHTTCS----EEEEEESSSTHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCC--CeEEEE--CC-C--CCH---HHHHHHHhcCCCc----EEEEEccCcCcHHH
Confidence 345555444 33445667788889999 777543 21 1 122 7777788888888 688865 444555
Q ss_pred HHHHHHHh
Q 017815 113 CGYAAASY 120 (365)
Q Consensus 113 ak~vA~~~ 120 (365)
++.++...
T Consensus 68 ~~~l~~~~ 75 (121)
T PF02310_consen 68 AKRLARAI 75 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55454433
No 462
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.31 E-value=4.5e+02 Score=25.61 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=48.6
Q ss_pred eEEEEEc-cCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCH--HHHHHHHHHHHHcCCCCcceEEEecCc----
Q 017815 36 KVLVVTN-NTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNM--DTLMKVFDKAIESRLDRRCTFVALGGG---- 107 (365)
Q Consensus 36 ~~livtd-~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~--~~v~~~~~~~~~~~~dr~~~IIaiGGG---- 107 (365)
.++++.+ .++.+. -..++...|.+.| .+|- +-++. |+ ..++++-.+..+.|++ +|=.=-|+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g--~~Vl---laA~D---TFRAaAiEQL~~w~er~gv~---vI~~~~G~DpAa 208 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQG--KSVL---LAAGD---TFRAAAIEQLEVWGERLGVP---VISGKEGADPAA 208 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCC--CeEE---EEecc---hHHHHHHHHHHHHHHHhCCe---EEccCCCCCcHH
Confidence 3555555 445554 5677788888888 6653 22332 33 3477777788888887 44322222
Q ss_pred hHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 108 VIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 108 sv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.+-|.... +-.++..++.|=|+
T Consensus 209 VafDAi~~---Akar~~DvvliDTA 230 (340)
T COG0552 209 VAFDAIQA---AKARGIDVVLIDTA 230 (340)
T ss_pred HHHHHHHH---HHHcCCCEEEEeCc
Confidence 22233322 23589999999888
No 463
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=22.28 E-value=2.4e+02 Score=21.03 Aligned_cols=58 Identities=7% Similarity=0.090 Sum_probs=36.8
Q ss_pred CCccceecccccccccceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceE
Q 017815 1 MTPKALLYKDRFFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSV 66 (365)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v 66 (365)
|+|...+--.+..+|.+++..+. .++++..|..+.|++|.... .+-|....+..| .++
T Consensus 6 ~~~~~~lD~~Gl~CP~Pll~~kk---~l~~l~~G~~l~V~~dd~~~---~~di~~~~~~~G--~~~ 63 (81)
T PRK00299 6 SSPDHTLDALGLRCPEPVMMVRK---TVRNMQPGETLLIIADDPAT---TRDIPSFCRFMD--HEL 63 (81)
T ss_pred cCcCeEEecCCCCCCHHHHHHHH---HHHcCCCCCEEEEEeCCccH---HHHHHHHHHHcC--CEE
Confidence 45666777788888888875443 55555446777777765543 344555566777 554
No 464
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=22.23 E-value=3.5e+02 Score=23.41 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=41.3
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhC-CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh---h
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG---D 111 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~-g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~---D 111 (365)
|+++||...-+.....+-.+.|... .+.+++.. +.+.|=+.+.+..+++.+.+.+ +| +|++ |.+ |
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~--~~~~el~~~~~~~~~~~~aia~--AD---ii~~----smlF~ed 70 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSV--FAAAELERDPEALEECEAAIAR--AD---IIFG----SMLFIED 70 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEE--EeHHHhhcChHHHHHHHHHHHh--CC---EEEe----ehhhhHH
Confidence 5777777666665444444445443 43366554 4444433455566666655543 35 8875 777 8
Q ss_pred HHHHHHHH
Q 017815 112 MCGYAAAS 119 (365)
Q Consensus 112 ~ak~vA~~ 119 (365)
.+..+.-.
T Consensus 71 ~v~~l~~~ 78 (164)
T PF11965_consen 71 HVRPLLPA 78 (164)
T ss_pred HHHHHHHH
Confidence 88777543
No 465
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=22.23 E-value=5.5e+02 Score=22.72 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=33.8
Q ss_pred ceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 64 VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 64 i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.++.+...+ .+. +.+...+.++.+.+.+++ .||+ +.+.-............++|++..-++
T Consensus 39 ~~v~~~~~d-~~~--~~~~~~~~~~~l~~~~v~---~iig--~~~~~~~~~~~~~~~~~~ip~i~~~~~ 99 (298)
T cd06268 39 RKIELVVED-TQG--DPEAAAAAARELVDDGVD---AVIG--PLSSGVALAAAPVAEEAGVPLISPGAT 99 (298)
T ss_pred eEEEEEEec-CCC--CHHHHHHHHHHHHhCCce---EEEc--CCcchhHHhhHHHHHhCCCcEEccCCC
Confidence 455444443 333 445677777777777777 7764 333222222222234578999987555
No 466
>PRK09701 D-allose transporter subunit; Provisional
Probab=22.15 E-value=6.4e+02 Score=23.41 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=49.9
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+.+.+|.... .+..+.+.+.+.+++.| +++.++.. ..+ .+.+.-.+.++.+...++| .||-.+.-....
T Consensus 25 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g--~~v~~~~~-~~~--~~~~~~~~~i~~l~~~~vD---giIi~~~~~~~~ 96 (311)
T PRK09701 25 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLG--VSVDIFAS-PSE--GDFQSQLQLFEDLSNKNYK---GIAFAPLSSVNL 96 (311)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHcC--CeEEEecC-CCC--CCHHHHHHHHHHHHHcCCC---EEEEeCCChHHH
Confidence 4555555321 23346677777788888 66543211 222 2445556667777777888 777776543211
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
. ..+..+...|+|++.+=+.
T Consensus 97 ~-~~l~~~~~~giPvV~~~~~ 116 (311)
T PRK09701 97 V-MPVARAWKKGIYLVNLDEK 116 (311)
T ss_pred H-HHHHHHHHCCCcEEEeCCC
Confidence 1 1122234679999998543
No 467
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=22.06 E-value=3.3e+02 Score=23.46 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh--hHHHHHHHHhhcC
Q 017815 47 PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG--DMCGYAAASYLRG 123 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~--D~ak~vA~~~~~g 123 (365)
+.-...+.+.|.+.| +++... ++++ +.+.+.+.++.+.+ .+| +||.-||=+.. |.++-+-+. ..+
T Consensus 18 d~n~~~l~~~L~~~G--~~v~~~~~v~D-----d~~~I~~~l~~~~~-~~d---lVIttGG~G~t~~D~t~ea~~~-~~~ 85 (170)
T cd00885 18 DTNAAFLAKELAELG--IEVYRVTVVGD-----DEDRIAEALRRASE-RAD---LVITTGGLGPTHDDLTREAVAK-AFG 85 (170)
T ss_pred EhHHHHHHHHHHHCC--CEEEEEEEeCC-----CHHHHHHHHHHHHh-CCC---EEEECCCCCCCCCChHHHHHHH-HhC
Confidence 335667777888888 666433 3333 44556666665543 345 99988875543 677655332 235
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
.++...|-.
T Consensus 86 ~~l~~~~e~ 94 (170)
T cd00885 86 RPLVLDEEA 94 (170)
T ss_pred CCcccCHHH
Confidence 555555444
No 468
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=22.00 E-value=3.1e+02 Score=24.14 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=38.3
Q ss_pred ceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 35 KKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 35 ~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
..++++.+. .+.-...++..+.|++.| .++.+..++++-+.-+.+.+..+.+++++
T Consensus 156 ~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~--~~v~~~~~~g~gH~i~~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 156 TPILIIHGDEDPVVPFEWAEKTAEFLKAAG--ANVEFHEYPGGGHEISPEELRDLREFLEK 214 (216)
T ss_dssp S-EEEEEETT-SSSTHHHHHHHHHHHHCTT---GEEEEEETT-SSS--HHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcccHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCHHHHHHHHHHHhh
Confidence 457777764 333447888999999998 66777778867676778888888888765
No 469
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.99 E-value=2.2e+02 Score=29.24 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccccccccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTTVMAQVD 138 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~ 138 (365)
|.+..+.++.+.+++.++. ||+=|| ....|++|+++ .|...+.+-|.+ +++.
T Consensus 328 p~~~ai~~~~~~~~~~~v~----vIadGGi~~~~di~kAla----~GA~~Vm~G~~~-a~~~ 380 (495)
T PTZ00314 328 PQASAVYHVARYARERGVP----CIADGGIKNSGDICKALA----LGADCVMLGSLL-AGTE 380 (495)
T ss_pred ChHHHHHHHHHHHhhcCCe----EEecCCCCCHHHHHHHHH----cCCCEEEECchh-cccc
Confidence 6778888888888888865 888888 88999999775 588899998886 5554
No 470
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=21.97 E-value=1.7e+02 Score=29.27 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 52 KVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 52 ~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
-+...|++.| .++..+ .-. .-+.+.+.+.++.+.+. +| +||-.||-|+.| .=++-..+
T Consensus 207 ~l~a~l~~~G--~e~~~~--giv--~Dd~~~l~~~i~~a~~~-~D---viItsGG~SvG~-~D~v~~~l 264 (404)
T COG0303 207 MLAALLERAG--GEVVDL--GIV--PDDPEALREAIEKALSE-AD---VIITSGGVSVGD-ADYVKAAL 264 (404)
T ss_pred HHHHHHHHcC--Cceeec--ccc--CCCHHHHHHHHHHhhhc-CC---EEEEeCCccCcc-hHhHHHHH
Confidence 4555677887 444322 111 12566777777776654 67 999999999987 44443333
No 471
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.97 E-value=1.1e+02 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=22.7
Q ss_pred ceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 99 CTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 99 ~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
|+||.+|| |+++.++... ...++|++-|.+-
T Consensus 44 d~vi~iGGDGT~L~aa~~~---~~~~~PilgIn~G 75 (272)
T PRK02231 44 QLAIVIGGDGNMLGRARVL---AKYDIPLIGINRG 75 (272)
T ss_pred CEEEEECCcHHHHHHHHHh---ccCCCcEEEEeCC
Confidence 39999998 7777777654 2457888888554
No 472
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=21.97 E-value=5.9e+02 Score=22.93 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+.+.+.+.+++.| +++.. .... + .+...+.++.+.+.++| .||..+....-+....+ ....++|+
T Consensus 18 ~~~~~gi~~~~~~~g--y~~~i--~~~~--~--~~~~~~~i~~l~~~~vd---giI~~~~~~~~~~~~~~--~~~~~~Pi 84 (265)
T cd06354 18 QSAWEGLERAAKELG--IEYKY--VESK--S--DADYEPNLEQLADAGYD---LIVGVGFLLADALKEVA--KQYPDQKF 84 (265)
T ss_pred HHHHHHHHHHHHHcC--CeEEE--EecC--C--HHHHHHHHHHHHhCCCC---EEEEcCcchHHHHHHHH--HHCCCCEE
Confidence 346777788888888 66533 3222 2 23445677778888888 88888744222222211 11238899
Q ss_pred EEec
Q 017815 127 IQIP 130 (365)
Q Consensus 127 i~IP 130 (365)
+.+=
T Consensus 85 V~i~ 88 (265)
T cd06354 85 AIID 88 (265)
T ss_pred EEEe
Confidence 9883
No 473
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.97 E-value=6.5e+02 Score=23.41 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 49 YLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
-.+++.+.+.+.| ++-. ++. ..|| +.=|.++-.++++.+.+.. ++ +|+++|+.+.-|+.+.+-.+...|..-
T Consensus 21 ~~~~li~~l~~~G--v~Gl-~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~--vi~gvg~~~~~~ai~~a~~a~~~Gad~ 94 (279)
T cd00953 21 KFKKHCENLISKG--IDYV-FVAGTTGLGPSLSFQEKLELLKAYSDIT-DK--VIFQVGSLNLEESIELARAAKSFGIYA 94 (279)
T ss_pred HHHHHHHHHHHcC--CcEE-EEcccCCCcccCCHHHHHHHHHHHHHHc-CC--EEEEeCcCCHHHHHHHHHHHHHcCCCE
Confidence 4555566666777 5432 222 2355 4567788888888887754 43 899999999988888776666778777
Q ss_pred EEec
Q 017815 127 IQIP 130 (365)
Q Consensus 127 i~IP 130 (365)
+.+.
T Consensus 95 v~v~ 98 (279)
T cd00953 95 IASL 98 (279)
T ss_pred EEEe
Confidence 7763
No 474
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=21.89 E-value=6.8e+02 Score=23.65 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=51.1
Q ss_pred ceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.++-++... ..+....+-+.+.+.+.| +++. ++. ... +.+.-.+.++.+...++| .||-.+.... +
T Consensus 26 ~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g--~~l~--i~~-~~~--~~~~~~~~i~~l~~~~vD---GiIi~~~~~~-~ 94 (330)
T PRK10355 26 VKIGMAIDDLRLERWQKDRDIFVKKAESLG--AKVF--VQS-ANG--NEETQMSQIENMINRGVD---VLVIIPYNGQ-V 94 (330)
T ss_pred ceEEEEecCCCchHHHHHHHHHHHHHHHcC--CEEE--EEC-CCC--CHHHHHHHHHHHHHcCCC---EEEEeCCChh-h
Confidence 445454432 233445666777788888 6653 333 222 445666778888888888 7777764321 1
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
..+.+......++|+|.+-..
T Consensus 95 ~~~~l~~~~~~~iPvV~id~~ 115 (330)
T PRK10355 95 LSNVIKEAKQEGIKVLAYDRM 115 (330)
T ss_pred HHHHHHHHHHCCCeEEEECCC
Confidence 123333334578999999654
No 475
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=1.8e+02 Score=27.85 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCCc--ceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 83 LMKVFDKAIESRLDRR--CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~--~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+....+.+.++=.+|. +.+||+||+-=.|+.--+...+..|+|-+.|.|-.
T Consensus 75 iaaMa~A~~r~l~sR~dV~gmig~GGsgGT~lit~~m~~LPlgvPK~mVST~A 127 (401)
T COG5441 75 IAAMAEAFVRFLSSRGDVAGMIGMGGSGGTALITPAMRRLPLGVPKVMVSTLA 127 (401)
T ss_pred HHHHHHHHHHHhhcccchhheeecCCCcchHhhhhHHHhcCcCCcceeeeeee
Confidence 3333344444434443 48999999988888766666677899999998884
No 476
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=21.89 E-value=2.2e+02 Score=23.87 Aligned_cols=90 Identities=21% Similarity=0.308 Sum_probs=53.7
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceE-----EEEEeC-CCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSV-----ENVILP-DGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v-----~~~~~~-~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
.+||++|+-|+.-.. ++.+.+.++..| -+| .+|++. .|- =++++=.++.+..-++|.. ++||-+|
T Consensus 5 ~gKkviiiGdRDGiP--gpAie~c~k~~g--aevvfs~TECfVctaAGA--MDLEnQ~Rvk~~aEk~g~e--NvvVllG- 75 (154)
T PRK13265 5 EGKKVIIIGDRDGIP--GPAIEECVKTTG--AEVVFSSTECFVUTAAGA--MDLENQKRVKDLAEKFGAE--NVVVILG- 75 (154)
T ss_pred cCcEEEEEecCCCCC--cHHHHHHHhccC--ceEEEEeeeEEEeecccc--cchHHHHHHHHHHHhcCCc--cEEEEec-
Confidence 379999999986433 456666777677 343 122222 222 3788888888888888877 2555554
Q ss_pred chHhhHHHHHHHHhhcCCcEEEecc
Q 017815 107 GVIGDMCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 107 Gsv~D~ak~vA~~~~~g~p~i~IPT 131 (365)
++=-..++..|-+...|-|-.+=|.
T Consensus 76 aaeaEaaglaAETVt~GDPTfAGPL 100 (154)
T PRK13265 76 AAEAEAAGLAAETVTNGDPTFAGPL 100 (154)
T ss_pred ccchhhccceeeeeccCCCcccccc
Confidence 5555555554444444554443333
No 477
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=21.86 E-value=5.6e+02 Score=22.60 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +.+. .++. + .+.+...+..+.+...++| .||-.+..+-.. -..+......++|
T Consensus 14 ~~~~~~~i~~~~~~~g--~~v~--~~~~-~--~~~~~~~~~~~~~~~~~~d---gii~~~~~~~~~-~~~l~~l~~~~ip 82 (268)
T cd06323 14 FVTLKDGAQKEAKELG--YELT--VLDA-Q--NDAAKQLNDIEDLITRGVD---AIIINPTDSDAV-VPAVKAANEAGIP 82 (268)
T ss_pred HHHHHHHHHHHHHHcC--ceEE--ecCC-C--CCHHHHHHHHHHHHHcCCC---EEEEcCCChHHH-HHHHHHHHHCCCc
Confidence 3446677778888887 6653 2332 2 2445566777777777887 766544332111 1122222356899
Q ss_pred EEEecc
Q 017815 126 FIQIPT 131 (365)
Q Consensus 126 ~i~IPT 131 (365)
++.+=.
T Consensus 83 vv~~~~ 88 (268)
T cd06323 83 VFTIDR 88 (268)
T ss_pred EEEEcc
Confidence 999843
No 478
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=21.72 E-value=1.2e+02 Score=27.11 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=20.8
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEE
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVE 67 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~ 67 (365)
.+|+++||-...+ .+..+...|.+.| -.|.
T Consensus 61 ~GK~vvVIGrS~i---VGkPla~lL~~~~--AtVt 90 (197)
T cd01079 61 YGKTITIINRSEV---VGRPLAALLANDG--ARVY 90 (197)
T ss_pred CCCEEEEECCCcc---chHHHHHHHHHCC--CEEE
Confidence 3789999888776 5666666676666 4554
No 479
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=21.63 E-value=3.4e+02 Score=22.95 Aligned_cols=75 Identities=7% Similarity=0.148 Sum_probs=45.2
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
-.+++.+. .++++||-|....+-+.+.+.+.-...| +++.++ ++++..+.+.+...+...++|=+
T Consensus 18 ~~W~~~~~-~~~IiVvdD~~A~D~~~k~~l~ma~P~g--vk~~i~------------sv~~a~~~l~~~~~~~~~v~ii~ 82 (151)
T PF03830_consen 18 TAWVKKLN-ANRIIVVDDEVANDPFQKMILKMAAPAG--VKLSIF------------SVEEAIEKLKKPEYSKKRVLIIV 82 (151)
T ss_dssp HHHHHHHT-TSEEEEE-HHHHHSHHHHHHHHHTSHTT--SEEEEE-------------HHHHHHHHCGGGGTTEEEEEEE
T ss_pred EEEhhhcc-cCEEEEECHHHhcCHHHHHHHHHhhcCC--CceEEE------------EHHHHHHHHHhcccCCceEEEEE
Confidence 44555553 5677777666555556666666554566 665433 45566666666555555577766
Q ss_pred cCchHhhHHHHH
Q 017815 105 GGGVIGDMCGYA 116 (365)
Q Consensus 105 GGGsv~D~ak~v 116 (365)
. ++-|+.+.+
T Consensus 83 k--~~~d~~~l~ 92 (151)
T PF03830_consen 83 K--SPEDALRLV 92 (151)
T ss_dssp S--SHHHHHHHH
T ss_pred C--CHHHHHHHH
Confidence 5 888888766
No 480
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.59 E-value=5.8e+02 Score=22.85 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 017815 76 NYKNMDTLMKVFDKAIESRLD 96 (365)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~~d 96 (365)
+.++.+.++++.+.+++.|..
T Consensus 188 ~~~~~~~l~~~~~~~~~~gl~ 208 (213)
T PRK10076 188 PAPSSADVATMREMAERAGFQ 208 (213)
T ss_pred CCcCHHHHHHHHHHHHHcCCe
Confidence 446777777777777777766
No 481
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=21.54 E-value=4.2e+02 Score=23.77 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=57.1
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe-cCchHhhHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL-GGGVIGDMC 113 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai-GGGsv~D~a 113 (365)
+.-++|++-+-....++++...|..-| ..+ |.+...|..-. +. --+.+.|+||+| |+|-.-.+.
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L~s~G--~~a--~fv~p~ea~hg--dl---------g~i~~~DvviaiS~SGeT~el~ 103 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARLASTG--TPA--FFVGPAEALHG--DL---------GMITPGDVVIAISGSGETKELL 103 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHHHccC--Cce--EEecCchhccC--Cc---------cCCCCCCEEEEEeCCCcHHHHH
Confidence 455777777666678999999998888 554 33443332110 00 112456799998 566666666
Q ss_pred HHHHHHhhcCCcEEEeccccccccccccCCc
Q 017815 114 GYAAASYLRGVSFIQIPTTVMAQVDSSVGGK 144 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~ 144 (365)
..+-.+-..|.++|+|-.. -+|..+..
T Consensus 104 ~~~~~aK~~g~~liaiT~~----~~SsLak~ 130 (202)
T COG0794 104 NLAPKAKRLGAKLIAITSN----PDSSLAKA 130 (202)
T ss_pred HHHHHHHHcCCcEEEEeCC----CCChHHHh
Confidence 6665556789999999544 34555544
No 482
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.53 E-value=4.1e+02 Score=20.91 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=43.5
Q ss_pred EEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec-CchHhhHHHHHH
Q 017815 39 VVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG-GGVIGDMCGYAA 117 (365)
Q Consensus 39 ivtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG-GGsv~D~ak~vA 117 (365)
.+.+.+......+.+...|...| ..+. .+.+.+ .+.. .+ ...+++|++|++. .|..-++.+.+.
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g--~~~~--~~~~~~------~~~~---~~--~~~~~~d~vi~iS~sG~t~~~~~~~~ 68 (128)
T cd05014 4 VVTGVGKSGHIARKIAATLSSTG--TPAF--FLHPTE------ALHG---DL--GMVTPGDVVIAISNSGETDELLNLLP 68 (128)
T ss_pred EEEeCcHhHHHHHHHHHHhhcCC--CceE--Ecccch------hhcc---cc--CcCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 44444444456777777777666 4443 222221 1111 11 2346677888886 455556666555
Q ss_pred HHhhcCCcEEEec
Q 017815 118 ASYLRGVSFIQIP 130 (365)
Q Consensus 118 ~~~~~g~p~i~IP 130 (365)
.+-.+|.|.+.|-
T Consensus 69 ~a~~~g~~vi~iT 81 (128)
T cd05014 69 HLKRRGAPIIAIT 81 (128)
T ss_pred HHHHCCCeEEEEe
Confidence 5566899999883
No 483
>PRK12383 putative mutase; Provisional
Probab=21.47 E-value=3e+02 Score=27.56 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=50.4
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHhh
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~D 111 (365)
.++++|+|.+.-. .+..|.+.|.+ +|-+.+-|..=+++++.++++.+|+. .+. =|||.||-. ++
T Consensus 127 ~g~~~l~v~n~~~---sgt~i~~d~G~--------v~qiaahe~~i~~e~l~~~c~~~R~~~~v~---RVIargg~~-~~ 191 (406)
T PRK12383 127 DGLQFLLVNQAVA---IGDNLEADLGQ--------VYNVTANLSVISFDDALKIGRIVREQVQVG---RVIVFGGLL-TD 191 (406)
T ss_pred CCCeEEeECCCcc---chhHHHHhhCc--------eEEEEecccccCHHHHHHHHHHHHHhcccc---eEEEecccc-cc
Confidence 4677888877654 24455444432 23333455555799999999999998 888 699998852 22
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+--..++.-.++-||+-+
T Consensus 192 ~~~~~~~~~~~~~pf~G~ 209 (406)
T PRK12383 192 SQRILDAAESKEGRFIGI 209 (406)
T ss_pred cchhhhhhcccCCCcccc
Confidence 222233333455566665
No 484
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=21.32 E-value=5e+02 Score=22.55 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=39.2
Q ss_pred ceEEEEEccCch--HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 35 KKVLVVTNNTVA--PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 35 ~~~livtd~~~~--~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
-+.++|||+... +.+.+.+.+.++ .| ++...+...+.........+.++.+.+..+++. +++. |-
T Consensus 7 ~~~~~it~~~~~~~~~~~~~~~~~~~-~g--v~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~-------~~ 73 (212)
T PRK00043 7 LRLYLITDSRDDSGRDLLEVVEAALE-GG--VTLVQLREKGLDTRERLELARALKELCRRYGVP---LIVN-------DR 73 (212)
T ss_pred CCEEEEECCcccccccHHHHHHHHHh-cC--CCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe---EEEe-------Ch
Confidence 368888888653 335666655554 46 543222222211111122233333334445554 5553 22
Q ss_pred HHHHHHHhhcCCcEEEeccc
Q 017815 113 CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPTT 132 (365)
.+ .....|...+.+|..
T Consensus 74 ~~---~a~~~gad~vh~~~~ 90 (212)
T PRK00043 74 VD---LALAVGADGVHLGQD 90 (212)
T ss_pred HH---HHHHcCCCEEecCcc
Confidence 22 223457778877765
No 485
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.10 E-value=3.8e+02 Score=26.55 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=51.1
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe----cCch
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL----GGGV 108 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai----GGGs 108 (365)
++.|+|++.... +++++.+.++..| .++..+..+-|++ .+.+.|++.++ +.-+++ .|.-+ =.|.
T Consensus 79 pgdkVLv~~nG~----FG~R~~~ia~~~g--~~v~~~~~~wg~~-v~p~~v~~~L~--~~~~~~---~V~~vH~ETSTGv 146 (383)
T COG0075 79 PGDKVLVVVNGK----FGERFAEIAERYG--AEVVVLEVEWGEA-VDPEEVEEALD--KDPDIK---AVAVVHNETSTGV 146 (383)
T ss_pred CCCeEEEEeCCh----HHHHHHHHHHHhC--CceEEEeCCCCCC-CCHHHHHHHHh--cCCCcc---EEEEEeccCcccc
Confidence 477888887775 4566666677777 6776676666665 56777777665 122333 44333 3566
Q ss_pred HhhHHHHHHHHhhcCCcEEE
Q 017815 109 IGDMCGYAAASYLRGVSFIQ 128 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~ 128 (365)
..|+....+..-..|.-+|.
T Consensus 147 lnpl~~I~~~~k~~g~l~iV 166 (383)
T COG0075 147 LNPLKEIAKAAKEHGALLIV 166 (383)
T ss_pred cCcHHHHHHHHHHcCCEEEE
Confidence 77776655544445554443
No 486
>PRK12474 hypothetical protein; Provisional
Probab=21.05 E-value=3e+02 Score=28.19 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=24.4
Q ss_pred hccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceE
Q 017815 30 RHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSV 66 (365)
Q Consensus 30 ~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v 66 (365)
.+..++|.+|+.+..+... ..+.+.+..+..| +.|
T Consensus 197 ~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g--~PV 232 (518)
T PRK12474 197 LLRNGKKSALLLRGSALRGAPLEAAGRIQAKTG--VRL 232 (518)
T ss_pred HHHcCCCcEEEECCccchhhHHHHHHHHHHHHC--CCE
Confidence 3445789999999888644 5666766666666 554
No 487
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.96 E-value=6.5e+02 Score=23.01 Aligned_cols=43 Identities=14% Similarity=-0.023 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
....+...+++.++| +|+.--.....-.+..+ ....++|++..
T Consensus 71 ~~~~~~~~~~~~~pd---ii~~~~~~~~~~~~~~~--~~~~~~~~i~~ 113 (364)
T cd03814 71 PRRRVRRLLDAFAPD---VVHIATPGPLGLAALRA--ARRLGIPVVTS 113 (364)
T ss_pred chhhHHHHHHhcCCC---EEEEeccchhhHHHHHH--HHHcCCCEEEE
Confidence 344555666777888 77765333332223222 23567887763
No 488
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=20.85 E-value=5.9e+02 Score=22.48 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+++.| +++. .+... . +.+.-.+.++.+...++| .||-.+.-...+. +......++
T Consensus 13 ~~~~~~~gi~~~~~~~g--~~~~--~~~~~-~--~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~~---~~~l~~~~i 79 (265)
T cd06299 13 YFASLATAIQDAASAAG--YSTI--IGNSD-E--NPETENRYLDNLLSQRVD---GIIVVPHEQSAEQ---LEDLLKRGI 79 (265)
T ss_pred cHHHHHHHHHHHHHHcC--CEEE--EEeCC-C--CHHHHHHHHHHHHhcCCC---EEEEcCCCCChHH---HHHHHhCCC
Confidence 34456777777788887 6654 33321 1 345556777788888888 7777764322222 222335799
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+=+.
T Consensus 80 pvV~~~~~ 87 (265)
T cd06299 80 PVVFVDRE 87 (265)
T ss_pred CEEEEecc
Confidence 99998655
No 489
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=20.81 E-value=3.7e+02 Score=24.48 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=33.2
Q ss_pred EEEEccCchHH--HHHHHHHHHhhCCCCce-EEEEEeCCCC---CCCCHHHHHHHHHHHHHcCCC
Q 017815 38 LVVTNNTVAPL--YLDKVTDALTRGNPNVS-VENVILPDGE---NYKNMDTLMKVFDKAIESRLD 96 (365)
Q Consensus 38 livtd~~~~~~--~~~~v~~~L~~~g~~i~-v~~~~~~~~e---~~~~~~~v~~~~~~~~~~~~d 96 (365)
=+++|.+|-.. ....+.+.+.+.| ++ |.+..|-+|. |.--..-++++.+.+.+.+..
T Consensus 34 GLlSdGGVHSh~~Hl~al~~~a~~~g--v~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~g 96 (223)
T PF06415_consen 34 GLLSDGGVHSHIDHLFALIKLAKKQG--VKKVYVHAFTDGRDTPPKSALKYLEELEEKLAEIGIG 96 (223)
T ss_dssp EEESS-SSS--HHHHHHHHHHHHHTT---SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHHTCT
T ss_pred EEecCCCccccHHHHHHHHHHHHHcC--CCEEEEEEecCCCCCCcchHHHHHHHHHHHHHhhCCc
Confidence 45778888654 5666777777887 54 4444454444 333346677888888776654
No 490
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=20.80 E-value=4.8e+02 Score=26.36 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
++..+++++++.+++.++| .|+. |.|-..+-+.
T Consensus 61 ~~y~d~~~i~~~a~~~~~d---aI~p-g~g~lsE~~~ 93 (467)
T PRK12833 61 KSYLNPAAILAAARQCGAD---AIHP-GYGFLSENAA 93 (467)
T ss_pred ccccCHHHHHHHHHHhCCC---EEEE-CCCccccCHH
Confidence 3555678889999999998 7776 4444443333
No 491
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.78 E-value=7.8e+02 Score=23.93 Aligned_cols=10 Identities=20% Similarity=0.773 Sum_probs=4.4
Q ss_pred cCCcEEEecc
Q 017815 122 RGVSFIQIPT 131 (365)
Q Consensus 122 ~g~p~i~IPT 131 (365)
.|+|++..|+
T Consensus 215 ~giP~~~~~~ 224 (398)
T PF00148_consen 215 FGIPYLYFPS 224 (398)
T ss_dssp HT-EEEEEC-
T ss_pred hCCCeeeccc
Confidence 3666666443
No 492
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=20.77 E-value=3.5e+02 Score=26.32 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=44.3
Q ss_pred hhhhhccCCceEEEEEccC-chH----HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 26 CLYYRHVQGKKVLVVTNNT-VAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~-~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
.+++.+...+++.+|++.. ..+ ...+.+.+.+++.| +++...... .+.......++..++. +++ +
T Consensus 136 ~i~~~~~w~~~vaiiy~~~~~~~~~~~~~~~~~~~~~~~~g--i~v~~~~~~----~~~~~d~~~~l~~ik~-~~~---v 205 (399)
T cd06384 136 HLHEHFNWTSRAALLYLDLKTDDRPHYFISEGVFLALQEEN--ANVSAHPYH----IEKNSDIIEIIQFIKQ-NGR---I 205 (399)
T ss_pred HHHHhCCCcEEEEEEEecCCccCCcceEehHHHHHHHHhcC--ceEEEEEEe----ccchhhHHHHHHHHhh-ccc---E
Confidence 3444443223676775321 111 03455667777777 555432221 1223466677777775 665 7
Q ss_pred EEEecCchHhhHHHHHHHHhhcC
Q 017815 101 FVALGGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g 123 (365)
||.. |..-+...++..+...|
T Consensus 206 Ii~~--~~~~~~~~i~~qa~~~g 226 (399)
T cd06384 206 VYIC--GPLETFLEIMLQAQREG 226 (399)
T ss_pred EEEe--CCchHHHHHHHHHHHcC
Confidence 7754 44556666665444333
No 493
>PRK08105 flavodoxin; Provisional
Probab=20.76 E-value=5e+02 Score=21.65 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=17.6
Q ss_pred eEEEEEccCc--hHHHHHHHHHHHhhCCCCceEE
Q 017815 36 KVLVVTNNTV--APLYLDKVTDALTRGNPNVSVE 67 (365)
Q Consensus 36 ~~livtd~~~--~~~~~~~v~~~L~~~g~~i~v~ 67 (365)
++.|++.... .+.+.+++.+.|.+.| +++.
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g--~~~~ 34 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQG--HEVT 34 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCC--CceE
Confidence 4556655433 3447777777776666 5543
No 494
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=20.65 E-value=6.6e+02 Score=25.10 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=49.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-------CCCHHHHHHHHHHHHHcCCCCcceEEEecC
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-------YKNMDTLMKVFDKAIESRLDRRCTFVALGG 106 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-------~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG 106 (365)
.+|++|+......+.+.+.+.+. ...| +++.-+.-++... .|-+.. +++.+.+++.++| .++||++.
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~-~~~g--~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id--~ViIAip~ 198 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSN-PQLG--LRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYA--YVIVAMPG 198 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhC-ccCC--cEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCC--EEEEecCC
Confidence 46777777766544444433321 1233 4443332222111 111223 5566667777776 48899986
Q ss_pred chHhhHHHHHHHHhhcCC-cEEEeccc
Q 017815 107 GVIGDMCGYAAASYLRGV-SFIQIPTT 132 (365)
Q Consensus 107 Gsv~D~ak~vA~~~~~g~-p~i~IPTT 132 (365)
-.--...+.+......+. ++..+|..
T Consensus 199 ~~~~~~~~ll~~l~~~~v~~V~~vP~~ 225 (456)
T TIGR03022 199 TQAEDMARLVRKLGALHFRNVLIVPSL 225 (456)
T ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCcc
Confidence 554455554443334567 88888877
No 495
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=20.64 E-value=5.4e+02 Score=21.99 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=35.1
Q ss_pred CceEEEEEccCch---HHHHHHHHHHHhhCCCCce-EEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec
Q 017815 34 GKKVLVVTNNTVA---PLYLDKVTDALTRGNPNVS-VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 34 ~~~~livtd~~~~---~~~~~~v~~~L~~~g~~i~-v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG 105 (365)
.-|+.||..+.-. +.+.+--.+.|++.|...+ +.++.+|+.-.-| .-.-..++..+.| .||++|
T Consensus 12 ~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiP-----l~a~~La~~~~yD---Avv~lG 79 (152)
T COG0054 12 GLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIP-----LAAKKLARTGKYD---AVVALG 79 (152)
T ss_pred CceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhH-----HHHHHHHhcCCcc---eEEEEe
Confidence 4578888776433 2345555566777663233 3356667643323 2222233444455 999998
No 496
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=20.61 E-value=5.9e+02 Score=22.40 Aligned_cols=75 Identities=5% Similarity=0.032 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+++.| +.+.. +. .+. +.+...+.++.+...++| .||...+-.. + .+.+......|+|
T Consensus 14 ~~~~~~~i~~~~~~~g--~~~~~--~~-~~~--~~~~~~~~~~~l~~~~vd---giii~~~~~~-~-~~~~~~~~~~~ip 81 (266)
T cd06282 14 FAECVQGIQEEARAAG--YSLLL--AT-TDY--DAEREADAVETLLRQRVD---GLILTVADAA-T-SPALDLLDAERVP 81 (266)
T ss_pred HHHHHHHHHHHHHHCC--CEEEE--ee-CCC--CHHHHHHHHHHHHhcCCC---EEEEecCCCC-c-hHHHHHHhhCCCC
Confidence 3446777778888888 66543 22 222 345556777777777787 7775443221 1 1233333457999
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
++.+=+.
T Consensus 82 vV~~~~~ 88 (266)
T cd06282 82 YVLAYND 88 (266)
T ss_pred EEEEecc
Confidence 9888443
No 497
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=20.59 E-value=4.3e+02 Score=20.79 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=41.7
Q ss_pred EEEEEccCchHHHHHHHHHHHhh-CCCCceEEEEEeCCCCCCCCHHHH-HHHHHHHHHcCCCCcceEEE--ecCchHhhH
Q 017815 37 VLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTL-MKVFDKAIESRLDRRCTFVA--LGGGVIGDM 112 (365)
Q Consensus 37 ~livtd~~~~~~~~~~v~~~L~~-~g~~i~v~~~~~~~~e~~~~~~~v-~~~~~~~~~~~~dr~~~IIa--iGGGsv~D~ 112 (365)
++|++-....+.+.+.+...+.. .. .+..+.+..+ .+.+++ +++.+.+.+.+ +.+.+||= ++|||+.-.
T Consensus 2 iii~sHG~~A~g~~~~~~~i~G~~~~---~i~~~~~~~~---~~~~~~~~~l~~~i~~~~-~~~~vlil~Dl~ggsp~n~ 74 (116)
T PF03610_consen 2 IIIASHGSLAEGLLESAEMILGEDQD---NIEAVDLYPD---ESIEDFEEKLEEAIEELD-EGDGVLILTDLGGGSPFNE 74 (116)
T ss_dssp EEEEEETTHHHHHHHHHHHHHTSTCS---SEEEEEETTT---SCHHHHHHHHHHHHHHCC-TTSEEEEEESSTTSHHHHH
T ss_pred EEEEECcHHHHHHHHHHHHHcCCCcc---cEEEEECcCC---CCHHHHHHHHHHHHHhcc-CCCcEEEEeeCCCCccchH
Confidence 56777777777777777776766 32 3444544433 355554 45555554443 12334444 899999888
Q ss_pred HH
Q 017815 113 CG 114 (365)
Q Consensus 113 ak 114 (365)
+-
T Consensus 75 a~ 76 (116)
T PF03610_consen 75 AA 76 (116)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 498
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=20.54 E-value=6.8e+02 Score=23.12 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHHcCC
Q 017815 79 NMDTLMKVFDKAIESRL 95 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~ 95 (365)
+++...+.++.+++.|+
T Consensus 156 s~~~~~~ai~~l~~~Gi 172 (296)
T TIGR00433 156 TYDDRVDTLENAKKAGL 172 (296)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33444444444444444
No 499
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.41 E-value=2.2e+02 Score=27.03 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred CccceecccccccccceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHH
Q 017815 2 TPKALLYKDRFFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMD 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~ 81 (365)
||.++|.--++|+. ++. +|+++||-..++ .+..+...|.+.| -.|..+....
T Consensus 140 Tp~avi~lL~~~~i--------------~l~-Gk~vvVvGrs~~---VG~Pla~lL~~~g--AtVtv~hs~t-------- 191 (285)
T PRK14191 140 TPMGVMRLLKHYHI--------------EIK-GKDVVIIGASNI---VGKPLAMLMLNAG--ASVSVCHILT-------- 191 (285)
T ss_pred cHHHHHHHHHHhCC--------------CCC-CCEEEEECCCch---hHHHHHHHHHHCC--CEEEEEeCCc--------
Q ss_pred HHHHHHHHHHHcCCCCcceEEEec
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiG 105 (365)
..+.+.+++..+ +|.|+|
T Consensus 192 --~~l~~~~~~ADI----vV~AvG 209 (285)
T PRK14191 192 --KDLSFYTQNADI----VCVGVG 209 (285)
T ss_pred --HHHHHHHHhCCE----EEEecC
No 500
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=20.36 E-value=6.9e+02 Score=23.10 Aligned_cols=75 Identities=7% Similarity=0.053 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+.+.| +++.++ ... . +.+.-.+.++.+...++| .||-.+.-...+ .++......++|
T Consensus 76 ~~~l~~gi~~~~~~~g--~~~~~~--~~~-~--~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~--~~~~~l~~~~iP 143 (328)
T PRK11303 76 YARIAKYLERQARQRG--YQLLIA--CSD-D--QPDNEMRCAEHLLQRQVD---ALIVSTSLPPEH--PFYQRLQNDGLP 143 (328)
T ss_pred HHHHHHHHHHHHHHcC--CEEEEE--eCC-C--CHHHHHHHHHHHHHcCCC---EEEEcCCCCCCh--HHHHHHHhcCCC
Confidence 3446667777788888 665432 211 1 334455677777788888 888766422111 222222346899
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
+|.+=..
T Consensus 144 vV~v~~~ 150 (328)
T PRK11303 144 IIALDRA 150 (328)
T ss_pred EEEECCC
Confidence 9998543
Done!