Query 017815
Match_columns 365
No_of_seqs 163 out of 1584
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 05:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okf_A 3-dehydroquinate syntha 100.0 3.8E-74 1.3E-78 559.8 36.5 347 14-364 40-389 (390)
2 3qbe_A 3-dehydroquinate syntha 100.0 2E-72 6.8E-77 544.8 36.9 344 14-363 22-366 (368)
3 2gru_A 2-deoxy-scyllo-inosose 100.0 2.6E-68 8.9E-73 519.4 27.0 342 14-360 11-360 (368)
4 3clh_A 3-dehydroquinate syntha 100.0 3.7E-67 1.3E-71 506.7 24.6 332 14-362 11-342 (343)
5 1sg6_A Pentafunctional AROM po 100.0 1E-65 3.4E-70 505.2 30.4 348 7-359 4-391 (393)
6 1xah_A Sadhqs, 3-dehydroquinat 100.0 7.9E-66 2.7E-70 499.8 24.7 338 14-364 10-351 (354)
7 1ujn_A Dehydroquinate synthase 100.0 1.6E-65 5.4E-70 496.0 23.8 326 15-364 11-339 (348)
8 3bfj_A 1,3-propanediol oxidore 100.0 2.6E-48 8.7E-53 381.2 25.8 324 9-361 5-385 (387)
9 1rrm_A Lactaldehyde reductase; 100.0 1.9E-48 6.5E-53 382.1 24.7 323 11-362 5-382 (386)
10 3ce9_A Glycerol dehydrogenase; 100.0 1.8E-48 6.1E-53 378.1 16.8 319 7-361 4-346 (354)
11 1jq5_A Glycerol dehydrogenase; 100.0 3.4E-46 1.2E-50 364.1 28.2 318 9-362 4-357 (370)
12 1vlj_A NADH-dependent butanol 100.0 2.4E-46 8.2E-51 369.3 26.6 330 6-362 12-405 (407)
13 3ox4_A Alcohol dehydrogenase 2 100.0 3.3E-46 1.1E-50 365.4 26.6 326 7-361 1-381 (383)
14 1oj7_A Hypothetical oxidoreduc 100.0 4.6E-46 1.6E-50 367.5 26.3 329 3-361 18-406 (408)
15 1o2d_A Alcohol dehydrogenase, 100.0 4.8E-46 1.6E-50 363.0 22.0 320 9-363 13-369 (371)
16 3jzd_A Iron-containing alcohol 100.0 4.8E-45 1.6E-49 353.6 23.8 318 7-361 5-350 (358)
17 3hl0_A Maleylacetate reductase 100.0 1.9E-44 6.3E-49 349.0 25.4 315 7-361 3-345 (353)
18 3uhj_A Probable glycerol dehyd 100.0 2.5E-43 8.6E-48 344.6 26.3 319 9-361 25-378 (387)
19 1kq3_A Glycerol dehydrogenase; 100.0 2.2E-44 7.4E-49 352.0 18.4 315 9-361 14-364 (376)
20 1ta9_A Glycerol dehydrogenase; 100.0 6.2E-44 2.1E-48 355.1 21.2 318 10-362 64-417 (450)
21 3iv7_A Alcohol dehydrogenase I 100.0 5.7E-43 2E-47 339.5 21.4 312 10-361 8-348 (364)
22 3rf7_A Iron-containing alcohol 100.0 4.3E-42 1.5E-46 334.2 20.8 319 8-361 21-374 (375)
23 3trh_A Phosphoribosylaminoimid 96.5 0.027 9.1E-07 47.5 10.9 87 35-132 7-93 (169)
24 3lp6_A Phosphoribosylaminoimid 96.4 0.026 8.9E-07 47.8 10.6 87 35-132 8-94 (174)
25 3oow_A Phosphoribosylaminoimid 96.4 0.03 1E-06 47.0 10.6 87 35-132 6-92 (166)
26 3ors_A N5-carboxyaminoimidazol 96.3 0.023 8E-07 47.6 9.4 87 35-132 4-90 (163)
27 3kuu_A Phosphoribosylaminoimid 96.2 0.026 9E-07 47.7 9.5 88 34-132 12-99 (174)
28 3rg8_A Phosphoribosylaminoimid 96.2 0.058 2E-06 45.1 11.3 87 35-132 3-90 (159)
29 1u11_A PURE (N5-carboxyaminoim 96.1 0.034 1.2E-06 47.4 9.4 87 35-132 22-108 (182)
30 1o4v_A Phosphoribosylaminoimid 96.0 0.045 1.5E-06 46.7 9.9 87 35-132 14-100 (183)
31 4grd_A N5-CAIR mutase, phospho 96.0 0.06 2.1E-06 45.4 10.4 88 34-132 12-99 (173)
32 1xmp_A PURE, phosphoribosylami 95.9 0.044 1.5E-06 46.2 9.2 87 35-132 12-98 (170)
33 2h31_A Multifunctional protein 95.0 0.17 5.8E-06 49.1 11.2 87 35-132 266-353 (425)
34 4b4k_A N5-carboxyaminoimidazol 94.8 0.22 7.4E-06 42.3 10.0 86 36-132 24-109 (181)
35 2bon_A Lipid kinase; DAG kinas 94.5 0.15 5.2E-06 47.9 9.5 87 35-132 30-119 (332)
36 2ywx_A Phosphoribosylaminoimid 92.7 0.46 1.6E-05 39.5 8.2 82 37-132 2-83 (157)
37 2i2c_A Probable inorganic poly 90.6 0.53 1.8E-05 42.8 7.1 67 36-132 2-70 (272)
38 2q5c_A NTRC family transcripti 89.9 1.5 5.1E-05 37.8 9.1 76 34-132 94-169 (196)
39 2qv7_A Diacylglycerol kinase D 89.8 1.7 5.7E-05 40.6 10.0 86 35-132 25-115 (337)
40 2pju_A Propionate catabolism o 89.3 1.8 6.1E-05 38.3 9.2 74 34-130 106-179 (225)
41 3s40_A Diacylglycerol kinase; 88.5 1.7 5.7E-05 40.0 8.9 86 34-132 8-98 (304)
42 1pfk_A Phosphofructokinase; tr 88.1 1.1 3.6E-05 41.9 7.2 49 79-133 79-127 (320)
43 1zxx_A 6-phosphofructokinase; 87.4 1 3.5E-05 42.1 6.6 50 78-133 77-126 (319)
44 3hno_A Pyrophosphate-dependent 86.8 1.1 3.7E-05 43.5 6.6 61 79-142 89-155 (419)
45 4a3s_A 6-phosphofructokinase; 86.1 1 3.5E-05 42.0 5.9 50 78-133 77-126 (319)
46 2pln_A HP1043, response regula 85.9 5 0.00017 31.0 9.2 74 34-129 18-92 (137)
47 1u0t_A Inorganic polyphosphate 79.4 6.6 0.00023 36.1 8.6 86 35-132 5-108 (307)
48 2f48_A Diphosphate--fructose-6 78.8 3.3 0.00011 41.6 6.6 53 78-133 150-205 (555)
49 1z0s_A Probable inorganic poly 77.7 2.6 8.7E-05 38.5 5.0 69 36-132 31-100 (278)
50 3afo_A NADH kinase POS5; alpha 76.6 6.1 0.00021 37.8 7.6 81 34-132 41-148 (388)
51 3o8l_A 6-phosphofructokinase, 76.6 4 0.00014 42.5 6.6 65 80-147 475-546 (762)
52 2an1_A Putative kinase; struct 76.1 7.8 0.00027 35.1 8.0 84 35-131 6-95 (292)
53 3opy_A 6-phosphofructo-1-kinas 75.4 4.2 0.00014 43.3 6.5 61 80-143 674-741 (989)
54 3pfn_A NAD kinase; structural 73.3 24 0.00081 33.4 10.6 91 32-132 36-141 (365)
55 4evq_A Putative ABC transporte 73.2 24 0.00082 32.2 10.7 88 25-125 143-232 (375)
56 3h6g_A Glutamate receptor, ion 73.1 12 0.00043 34.7 8.8 87 25-124 130-216 (395)
57 2ab0_A YAJL; DJ-1/THIJ superfa 72.4 30 0.001 29.3 10.4 87 35-133 3-109 (205)
58 1xmx_A Hypothetical protein VC 72.3 22 0.00075 33.7 10.3 102 25-132 16-121 (385)
59 3o21_A Glutamate receptor 3; p 72.0 20 0.0007 33.4 10.1 94 20-124 117-210 (389)
60 3l3b_A ES1 family protein; ssg 70.8 33 0.0011 30.2 10.5 98 34-133 23-161 (242)
61 3o8o_A 6-phosphofructokinase s 70.5 7.2 0.00025 40.7 6.8 50 81-133 470-523 (787)
62 3opy_A 6-phosphofructo-1-kinas 70.3 4.4 0.00015 43.1 5.2 64 79-145 289-375 (989)
63 3opy_B 6-phosphofructo-1-kinas 69.9 6.3 0.00022 41.9 6.3 49 82-133 650-702 (941)
64 2hig_A 6-phospho-1-fructokinas 69.6 8.9 0.00031 37.7 6.9 61 83-146 178-244 (487)
65 2ek0_A Stage V sporulation pro 68.7 5.9 0.0002 29.5 4.1 50 80-132 13-66 (90)
66 3o8l_A 6-phosphofructokinase, 66.7 11 0.00038 39.2 7.2 67 78-147 93-182 (762)
67 4eyg_A Twin-arginine transloca 66.6 13 0.00044 34.0 7.2 88 24-124 130-219 (368)
68 2pjk_A 178AA long hypothetical 66.5 25 0.00087 29.4 8.4 62 45-116 37-102 (178)
69 3sm9_A Mglur3, metabotropic gl 66.4 31 0.001 33.4 10.2 101 21-132 173-276 (479)
70 3o8o_B 6-phosphofructokinase s 66.4 4.1 0.00014 42.4 4.0 50 81-133 471-524 (766)
71 1pea_A Amidase operon; gene re 66.3 61 0.0021 29.7 12.0 82 25-115 132-216 (385)
72 3o8o_B 6-phosphofructokinase s 65.5 6.9 0.00024 40.8 5.4 66 79-147 83-171 (766)
73 2hqr_A Putative transcriptiona 64.4 19 0.00064 30.4 7.4 73 36-129 2-74 (223)
74 3hsy_A Glutamate receptor 2; l 64.0 22 0.00075 32.9 8.4 97 20-124 108-204 (376)
75 2e4u_A Metabotropic glutamate 63.2 49 0.0017 32.5 11.2 97 24-131 177-276 (555)
76 3i42_A Response regulator rece 62.8 37 0.0013 25.3 8.2 77 35-130 4-84 (127)
77 3f6p_A Transcriptional regulat 62.2 43 0.0015 24.8 8.5 74 35-129 3-79 (120)
78 4gpa_A Glutamate receptor 4; P 62.1 68 0.0023 29.1 11.4 87 25-123 122-208 (389)
79 3td9_A Branched chain amino ac 61.5 57 0.0019 29.5 10.7 88 25-124 140-229 (366)
80 3snr_A Extracellular ligand-bi 61.5 55 0.0019 29.3 10.5 88 24-124 126-215 (362)
81 3hbm_A UDP-sugar hydrolase; PS 61.4 27 0.00092 31.6 8.1 84 35-132 158-253 (282)
82 3i45_A Twin-arginine transloca 61.3 30 0.001 31.9 8.7 87 25-124 134-224 (387)
83 3lop_A Substrate binding perip 60.8 39 0.0013 30.7 9.5 87 25-124 133-221 (364)
84 3l4e_A Uncharacterized peptida 60.6 39 0.0013 28.9 8.7 83 34-131 27-121 (206)
85 3i09_A Periplasmic branched-ch 60.0 31 0.0011 31.6 8.6 87 25-124 132-220 (375)
86 3h5l_A Putative branched-chain 59.9 26 0.00089 32.8 8.1 81 34-125 164-246 (419)
87 4f11_A Gamma-aminobutyric acid 59.8 18 0.00063 34.0 7.1 90 20-124 141-231 (433)
88 3saj_A Glutamate receptor 1; r 59.6 11 0.00037 35.1 5.4 93 20-124 115-207 (384)
89 3g1w_A Sugar ABC transporter; 58.8 73 0.0025 27.9 10.7 89 34-132 4-95 (305)
90 3grc_A Sensor protein, kinase; 58.8 48 0.0017 25.0 8.4 79 34-131 6-88 (140)
91 1mkz_A Molybdenum cofactor bio 58.4 54 0.0018 27.1 9.0 61 46-116 26-90 (172)
92 3sg0_A Extracellular ligand-bi 58.4 20 0.00067 32.8 6.9 92 21-125 147-240 (386)
93 3hut_A Putative branched-chain 58.1 60 0.002 29.2 10.1 91 21-124 127-219 (358)
94 3rfq_A Pterin-4-alpha-carbinol 56.9 31 0.0011 29.2 7.2 56 46-111 47-103 (185)
95 3s5p_A Ribose 5-phosphate isom 56.6 21 0.00073 29.7 5.9 89 36-133 23-111 (166)
96 3ipc_A ABC transporter, substr 56.0 36 0.0012 30.7 8.3 89 25-125 129-219 (356)
97 3hv2_A Response regulator/HD d 56.0 62 0.0021 25.0 8.7 76 34-129 14-92 (153)
98 3ph3_A Ribose-5-phosphate isom 55.3 22 0.00077 29.7 5.8 90 35-133 21-110 (169)
99 3lte_A Response regulator; str 54.4 64 0.0022 24.0 8.5 65 34-117 6-73 (132)
100 3gbv_A Putative LACI-family tr 54.4 1E+02 0.0035 26.7 10.9 80 46-133 24-104 (304)
101 2qh8_A Uncharacterized protein 54.4 61 0.0021 28.7 9.4 71 47-130 23-97 (302)
102 3eul_A Possible nitrate/nitrit 54.1 72 0.0025 24.5 8.8 78 34-129 15-95 (152)
103 3ks9_A Mglur1, metabotropic gl 54.0 56 0.0019 31.7 9.7 92 24-124 188-281 (496)
104 1usg_A Leucine-specific bindin 53.9 74 0.0025 28.3 10.0 88 25-124 129-218 (346)
105 3n0w_A ABC branched chain amin 53.8 22 0.00075 32.7 6.4 87 25-124 134-222 (379)
106 3lkv_A Uncharacterized conserv 53.7 82 0.0028 28.1 10.2 94 24-129 129-226 (302)
107 1n57_A Chaperone HSP31, protei 53.6 59 0.002 29.3 9.1 38 96-133 144-188 (291)
108 3iwt_A 178AA long hypothetical 53.3 63 0.0021 26.6 8.6 59 47-115 39-101 (178)
109 3lkb_A Probable branched-chain 53.3 56 0.0019 30.0 9.2 89 25-125 134-224 (392)
110 3o8o_A 6-phosphofructokinase s 53.0 6.6 0.00023 41.0 2.7 65 79-146 84-171 (787)
111 2j48_A Two-component sensor ki 52.6 51 0.0017 23.6 7.3 76 35-129 2-81 (119)
112 3kht_A Response regulator; PSI 52.6 52 0.0018 25.0 7.7 80 34-130 5-88 (144)
113 3opy_B 6-phosphofructo-1-kinas 52.5 19 0.00064 38.3 6.0 62 79-143 261-345 (941)
114 1dp4_A Atrial natriuretic pept 52.5 65 0.0022 30.0 9.6 87 25-124 138-231 (435)
115 2i0f_A 6,7-dimethyl-8-ribityll 52.2 75 0.0026 26.1 8.6 84 35-129 13-116 (157)
116 2is8_A Molybdopterin biosynthe 51.9 38 0.0013 27.7 6.9 61 47-117 20-84 (164)
117 4d9b_A D-cysteine desulfhydras 51.9 53 0.0018 30.3 8.7 48 83-132 187-235 (342)
118 3jy6_A Transcriptional regulat 51.7 1.2E+02 0.004 26.1 12.5 84 35-132 8-94 (276)
119 3cg0_A Response regulator rece 50.9 60 0.0021 24.4 7.7 76 34-129 9-88 (140)
120 3nkl_A UDP-D-quinovosamine 4-d 50.8 34 0.0012 26.6 6.3 47 84-132 55-101 (141)
121 3eaf_A ABC transporter, substr 50.8 40 0.0014 31.1 7.7 88 25-124 132-224 (391)
122 2wte_A CSA3; antiviral protein 50.7 1.3E+02 0.0044 26.4 10.6 80 33-119 33-116 (244)
123 3eod_A Protein HNR; response r 50.6 62 0.0021 24.0 7.7 76 34-129 7-85 (130)
124 3lkv_A Uncharacterized conserv 50.5 52 0.0018 29.4 8.2 76 46-132 22-99 (302)
125 3he8_A Ribose-5-phosphate isom 50.3 26 0.00091 28.6 5.4 89 36-133 2-90 (149)
126 1o1x_A Ribose-5-phosphate isom 50.0 34 0.0012 28.2 6.0 91 34-133 12-102 (155)
127 3egc_A Putative ribose operon 49.5 1.1E+02 0.0039 26.4 10.3 86 35-133 9-97 (291)
128 3gt7_A Sensor protein; structu 49.4 67 0.0023 24.9 7.9 77 34-129 7-87 (154)
129 2q5c_A NTRC family transcripti 49.2 77 0.0026 26.7 8.6 43 79-132 37-79 (196)
130 3kg2_A Glutamate receptor 2; I 49.1 38 0.0013 34.9 7.9 96 20-123 108-203 (823)
131 3lft_A Uncharacterized protein 48.7 65 0.0022 28.3 8.6 73 46-131 16-91 (295)
132 4f06_A Extracellular ligand-bi 48.4 79 0.0027 28.8 9.4 70 25-105 131-202 (371)
133 3gl9_A Response regulator; bet 48.1 67 0.0023 23.8 7.4 76 35-129 3-82 (122)
134 3k4h_A Putative transcriptiona 47.5 94 0.0032 26.9 9.4 73 47-132 29-101 (292)
135 1y5e_A Molybdenum cofactor bio 47.1 70 0.0024 26.2 7.8 61 46-116 29-93 (169)
136 1vhq_A Enhancing lycopene bios 46.8 65 0.0022 27.7 8.0 97 35-133 7-143 (232)
137 3b4u_A Dihydrodipicolinate syn 46.4 1.6E+02 0.0056 26.3 11.0 87 43-132 19-107 (294)
138 1c2y_A Protein (lumazine synth 46.1 83 0.0029 25.8 7.9 88 34-132 13-117 (156)
139 2pbq_A Molybdenum cofactor bio 46.0 64 0.0022 26.8 7.5 60 47-116 24-89 (178)
140 1k68_A Phytochrome response re 45.8 78 0.0027 23.5 7.6 80 34-130 2-92 (140)
141 2b99_A Riboflavin synthase; lu 45.6 47 0.0016 27.3 6.3 86 36-132 4-100 (156)
142 3ot1_A 4-methyl-5(B-hydroxyeth 45.6 62 0.0021 27.3 7.5 97 34-132 9-113 (208)
143 2fqx_A Membrane lipoprotein TM 45.4 1.7E+02 0.0057 26.2 11.7 85 35-132 5-95 (318)
144 3qek_A NMDA glutamate receptor 45.3 88 0.003 28.6 9.2 96 24-132 130-251 (384)
145 3mm4_A Histidine kinase homolo 44.9 1.1E+02 0.0039 25.2 9.1 79 34-131 61-159 (206)
146 2qxy_A Response regulator; reg 44.8 76 0.0026 23.9 7.5 76 34-129 4-81 (142)
147 3hzh_A Chemotaxis response reg 44.7 96 0.0033 24.1 8.2 76 35-129 37-117 (157)
148 2zay_A Response regulator rece 44.7 59 0.002 24.8 6.8 77 34-129 8-88 (147)
149 2rjn_A Response regulator rece 44.3 94 0.0032 23.9 8.0 76 34-129 7-85 (154)
150 2qh8_A Uncharacterized protein 44.1 1E+02 0.0035 27.1 9.2 91 26-128 131-225 (302)
151 2vvr_A Ribose-5-phosphate isom 43.6 34 0.0012 27.9 5.1 88 36-132 3-90 (149)
152 3hcw_A Maltose operon transcri 43.5 1E+02 0.0035 27.0 9.0 74 46-132 27-100 (295)
153 3c3k_A Alanine racemase; struc 43.3 1.6E+02 0.0055 25.4 11.2 84 35-132 9-95 (285)
154 4gmk_A Ribose-5-phosphate isom 43.2 35 0.0012 30.0 5.4 54 79-133 3-58 (228)
155 2gkg_A Response regulator homo 43.0 84 0.0029 22.8 7.3 78 35-132 6-88 (127)
156 3m9w_A D-xylose-binding peripl 42.8 1.5E+02 0.0051 26.0 10.1 78 45-133 16-93 (313)
157 3cg4_A Response regulator rece 42.7 86 0.003 23.5 7.5 77 34-129 7-87 (142)
158 3e61_A Putative transcriptiona 42.0 1.4E+02 0.0047 25.6 9.5 84 35-133 9-96 (277)
159 3l21_A DHDPS, dihydrodipicolin 41.9 1.2E+02 0.0041 27.4 9.3 85 44-131 32-118 (304)
160 3tb6_A Arabinose metabolism tr 41.9 1.7E+02 0.0057 25.2 10.3 85 35-132 16-108 (298)
161 1e2b_A Enzyme IIB-cellobiose; 41.8 38 0.0013 25.7 5.0 37 35-73 4-41 (106)
162 3rqi_A Response regulator prot 41.6 91 0.0031 25.1 7.8 76 34-129 7-85 (184)
163 4f21_A Carboxylesterase/phosph 41.6 69 0.0023 27.8 7.3 55 36-92 185-242 (246)
164 4e08_A DJ-1 beta; flavodoxin-l 41.5 25 0.00084 29.3 4.2 95 34-133 5-110 (190)
165 3k7p_A Ribose 5-phosphate isom 41.5 33 0.0011 28.9 4.8 90 35-133 23-114 (179)
166 3l49_A ABC sugar (ribose) tran 41.3 1.7E+02 0.0058 25.1 12.6 87 35-132 6-95 (291)
167 3om0_A Glutamate receptor, ion 41.1 66 0.0023 29.6 7.6 90 21-124 127-216 (393)
168 1rvv_A Riboflavin synthase; tr 41.1 1.2E+02 0.004 24.8 8.1 88 34-132 12-117 (154)
169 3t6k_A Response regulator rece 41.1 1.1E+02 0.0038 22.9 9.1 77 34-129 4-84 (136)
170 2obx_A DMRL synthase 1, 6,7-di 41.0 89 0.003 25.6 7.3 89 34-130 11-114 (157)
171 1xky_A Dihydrodipicolinate syn 40.7 1.6E+02 0.0054 26.6 9.9 87 43-132 28-116 (301)
172 3flu_A DHDPS, dihydrodipicolin 40.7 1.6E+02 0.0054 26.5 9.9 86 43-131 23-110 (297)
173 3lft_A Uncharacterized protein 40.7 1.8E+02 0.0062 25.3 10.3 80 25-116 123-205 (295)
174 3cpr_A Dihydrodipicolinate syn 40.5 1.7E+02 0.0058 26.4 10.1 86 43-131 32-119 (304)
175 3gv0_A Transcriptional regulat 40.1 1.2E+02 0.004 26.4 8.8 75 45-132 24-98 (288)
176 3dzc_A UDP-N-acetylglucosamine 40.1 1.8E+02 0.0062 27.0 10.6 43 82-129 99-141 (396)
177 2rk3_A Protein DJ-1; parkinson 39.5 1.6E+02 0.0055 24.3 11.1 89 34-133 3-109 (197)
178 2vvp_A Ribose-5-phosphate isom 39.3 38 0.0013 28.1 4.8 88 36-132 5-93 (162)
179 2c92_A 6,7-dimethyl-8-ribityll 39.2 1E+02 0.0035 25.4 7.4 86 34-132 17-118 (160)
180 3dz1_A Dihydrodipicolinate syn 39.0 1.4E+02 0.0047 27.2 9.2 83 44-130 25-109 (313)
181 3ixq_A Ribose-5-phosphate isom 38.9 27 0.00093 30.6 4.1 37 97-133 19-57 (226)
182 3dnf_A ISPH, LYTB, 4-hydroxy-3 38.7 2.2E+02 0.0075 25.9 10.2 99 24-132 146-244 (297)
183 3hdv_A Response regulator; PSI 38.7 89 0.003 23.3 6.9 77 34-129 7-87 (136)
184 2qr3_A Two-component system re 38.7 1.1E+02 0.0037 22.8 7.5 75 35-129 4-86 (140)
185 2hqb_A Transcriptional activat 38.6 86 0.0029 27.8 7.7 74 46-131 22-95 (296)
186 2wkj_A N-acetylneuraminate lya 38.2 1.5E+02 0.0052 26.7 9.3 87 43-132 27-115 (303)
187 3l6u_A ABC-type sugar transpor 38.2 1.9E+02 0.0065 24.8 12.0 87 35-132 9-98 (293)
188 1hqk_A 6,7-dimethyl-8-ribityll 38.2 1E+02 0.0035 25.1 7.3 88 34-132 12-117 (154)
189 1qkk_A DCTD, C4-dicarboxylate 38.1 75 0.0026 24.5 6.5 76 34-129 3-81 (155)
190 1j0a_A 1-aminocyclopropane-1-c 38.1 1.1E+02 0.0039 27.7 8.5 35 97-132 182-217 (325)
191 2ehh_A DHDPS, dihydrodipicolin 37.5 1.6E+02 0.0055 26.4 9.4 88 42-132 15-104 (294)
192 3hhe_A Ribose-5-phosphate isom 37.3 1E+02 0.0036 27.4 7.7 37 97-133 40-77 (255)
193 3ot5_A UDP-N-acetylglucosamine 37.2 1.5E+02 0.0052 27.7 9.5 47 81-132 101-147 (403)
194 3na8_A Putative dihydrodipicol 37.1 1.3E+02 0.0043 27.5 8.6 87 43-132 40-128 (315)
195 1kz1_A 6,7-dimethyl-8-ribityll 36.2 1.4E+02 0.0049 24.4 7.8 86 34-129 17-120 (159)
196 1srr_A SPO0F, sporulation resp 36.2 1.2E+02 0.0042 22.0 8.9 75 35-129 4-81 (124)
197 2v9d_A YAGE; dihydrodipicolini 36.1 1.5E+02 0.005 27.5 8.9 88 42-132 46-135 (343)
198 3pzy_A MOG; ssgcid, seattle st 36.0 55 0.0019 26.9 5.4 53 48-111 27-80 (164)
199 2r8w_A AGR_C_1641P; APC7498, d 36.0 1.5E+02 0.0052 27.2 9.0 87 43-132 50-138 (332)
200 1di0_A Lumazine synthase; tran 36.0 87 0.003 25.7 6.5 89 34-132 10-115 (158)
201 3h5i_A Response regulator/sens 35.9 1.4E+02 0.0047 22.4 9.1 77 34-131 5-86 (140)
202 3ksm_A ABC-type sugar transpor 35.6 2E+02 0.0069 24.3 9.7 76 46-132 15-93 (276)
203 3n7t_A Macrophage binding prot 35.5 2.2E+02 0.0076 24.8 11.0 40 94-133 102-148 (247)
204 2m1z_A LMO0427 protein; homolo 35.5 1.5E+02 0.005 22.6 7.5 79 36-132 4-86 (106)
205 3brq_A HTH-type transcriptiona 35.4 2.1E+02 0.0072 24.4 11.4 85 35-132 20-110 (296)
206 3heb_A Response regulator rece 35.3 1.3E+02 0.0043 23.0 7.4 80 35-131 5-97 (152)
207 3kjx_A Transcriptional regulat 35.0 2.3E+02 0.0077 25.3 10.1 82 35-129 69-153 (344)
208 3d0c_A Dihydrodipicolinate syn 35.0 1E+02 0.0035 28.1 7.6 84 44-132 29-115 (314)
209 3si9_A DHDPS, dihydrodipicolin 34.9 1.7E+02 0.0059 26.6 9.2 86 43-131 38-125 (315)
210 2yxg_A DHDPS, dihydrodipicolin 34.9 1.6E+02 0.0056 26.2 8.9 87 42-131 15-103 (289)
211 3cnb_A DNA-binding response re 34.6 1.4E+02 0.0048 22.2 7.7 77 34-129 8-90 (143)
212 1f2d_A 1-aminocyclopropane-1-c 34.5 2.2E+02 0.0075 25.8 10.0 51 81-132 177-228 (341)
213 3tak_A DHDPS, dihydrodipicolin 34.5 1.6E+02 0.0055 26.4 8.8 85 44-131 18-104 (291)
214 3fkr_A L-2-keto-3-deoxyarabona 34.5 1.6E+02 0.0054 26.7 8.8 85 44-131 25-111 (309)
215 3cz5_A Two-component response 34.4 1.3E+02 0.0045 22.9 7.4 77 34-129 5-85 (153)
216 2iuf_A Catalase; oxidoreductas 34.3 22 0.00076 36.5 3.1 88 34-132 529-641 (688)
217 3kbq_A Protein TA0487; structu 34.1 1.2E+02 0.004 25.2 7.2 76 45-132 20-98 (172)
218 3l18_A Intracellular protease 34.1 94 0.0032 24.9 6.6 94 34-133 2-105 (168)
219 2ojp_A DHDPS, dihydrodipicolin 34.1 1.6E+02 0.0055 26.4 8.7 86 43-131 17-104 (292)
220 1jlj_A Gephyrin; globular alph 34.0 1.3E+02 0.0045 25.2 7.6 60 47-116 33-99 (189)
221 2a9o_A Response regulator; ess 34.0 1.3E+02 0.0044 21.5 8.2 74 35-129 2-78 (120)
222 2g2c_A Putative molybdenum cof 34.0 91 0.0031 25.5 6.5 58 49-116 26-90 (167)
223 3kke_A LACI family transcripti 34.0 1.8E+02 0.0062 25.3 9.1 85 35-133 16-104 (303)
224 3khj_A Inosine-5-monophosphate 33.9 2.2E+02 0.0074 26.5 9.8 50 78-135 191-241 (361)
225 1di6_A MOGA, molybdenum cofact 33.8 1.3E+02 0.0043 25.5 7.5 58 49-116 24-87 (195)
226 1dbq_A Purine repressor; trans 33.8 2.2E+02 0.0077 24.3 10.9 86 35-132 8-96 (289)
227 8abp_A L-arabinose-binding pro 33.7 2.3E+02 0.0079 24.4 9.8 74 47-132 18-91 (306)
228 3h75_A Periplasmic sugar-bindi 33.5 2.6E+02 0.0088 24.9 11.0 87 35-133 4-96 (350)
229 1uuy_A CNX1, molybdopterin bio 33.5 1.3E+02 0.0043 24.5 7.3 56 51-116 28-92 (167)
230 4e7p_A Response regulator; DNA 33.4 1.6E+02 0.0054 22.4 8.8 77 35-129 21-100 (150)
231 3d02_A Putative LACI-type tran 33.4 2.3E+02 0.008 24.4 11.8 76 47-132 20-95 (303)
232 4h0c_A Phospholipase/carboxyle 33.0 54 0.0018 27.6 5.0 54 35-90 152-208 (210)
233 3cfy_A Putative LUXO repressor 33.0 1.5E+02 0.0053 22.1 8.1 75 35-129 5-82 (137)
234 3ej6_A Catalase-3; heme, hydro 32.9 46 0.0016 34.1 5.1 89 33-132 536-639 (688)
235 4dpp_A DHDPS 2, dihydrodipicol 32.9 2.3E+02 0.0079 26.4 9.7 85 43-130 75-161 (360)
236 1tvm_A PTS system, galactitol- 32.9 62 0.0021 24.7 4.9 34 34-69 21-56 (113)
237 3h5o_A Transcriptional regulat 32.8 2.6E+02 0.0089 24.8 10.1 83 36-131 64-149 (339)
238 1mb3_A Cell division response 32.5 1.4E+02 0.0048 21.5 8.2 76 35-129 2-81 (124)
239 4fhz_A Phospholipase/carboxyle 32.3 99 0.0034 27.5 7.0 57 35-93 206-265 (285)
240 3a5f_A Dihydrodipicolinate syn 32.2 2E+02 0.0068 25.7 9.0 85 45-132 19-105 (291)
241 3bfj_A 1,3-propanediol oxidore 31.8 25 0.00086 33.2 2.9 16 291-306 300-315 (387)
242 1tmy_A CHEY protein, TMY; chem 31.7 1.4E+02 0.0049 21.4 7.0 76 35-129 3-81 (120)
243 2vc6_A MOSA, dihydrodipicolina 31.5 1.4E+02 0.0049 26.7 7.9 87 41-131 14-103 (292)
244 2fep_A Catabolite control prot 31.5 2.5E+02 0.0086 24.2 11.3 85 35-132 17-104 (289)
245 3m5v_A DHDPS, dihydrodipicolin 31.5 2.2E+02 0.0075 25.6 9.2 89 41-132 21-112 (301)
246 3daq_A DHDPS, dihydrodipicolin 31.4 1.6E+02 0.0055 26.4 8.2 85 44-131 19-105 (292)
247 1dz3_A Stage 0 sporulation pro 31.4 1.5E+02 0.005 21.8 7.0 77 35-129 3-83 (130)
248 3huu_A Transcription regulator 31.3 1.6E+02 0.0055 25.7 8.3 72 48-132 44-115 (305)
249 1o5k_A DHDPS, dihydrodipicolin 31.3 1.7E+02 0.0057 26.5 8.4 88 42-132 27-116 (306)
250 3s5o_A 4-hydroxy-2-oxoglutarat 31.2 2.6E+02 0.009 25.1 9.7 84 44-130 31-116 (307)
251 1oi4_A Hypothetical protein YH 31.1 1.5E+02 0.0051 24.5 7.5 98 34-133 23-128 (193)
252 3qay_A Endolysin; amidase A/B 30.8 1.4E+02 0.0047 24.8 7.1 52 49-105 34-85 (180)
253 1zgz_A Torcad operon transcrip 30.6 1.5E+02 0.0052 21.3 8.1 74 35-129 3-79 (122)
254 1u9c_A APC35852; structural ge 30.6 88 0.003 26.5 6.1 36 98-133 90-132 (224)
255 3qze_A DHDPS, dihydrodipicolin 30.6 1.8E+02 0.0061 26.4 8.5 85 44-131 40-126 (314)
256 2rfg_A Dihydrodipicolinate syn 30.3 1.7E+02 0.0059 26.3 8.2 89 41-132 14-104 (297)
257 2b4a_A BH3024; flavodoxin-like 30.2 1.2E+02 0.0042 22.6 6.4 77 34-130 15-95 (138)
258 3ilh_A Two component response 30.0 1.7E+02 0.0058 21.7 10.1 79 35-130 10-99 (146)
259 3nbm_A PTS system, lactose-spe 29.9 1.8E+02 0.0062 22.0 9.4 81 34-132 6-87 (108)
260 1k66_A Phytochrome response re 29.8 1.1E+02 0.0038 22.9 6.1 79 34-129 6-98 (149)
261 3h5d_A DHDPS, dihydrodipicolin 29.7 2.7E+02 0.0094 25.1 9.6 84 44-130 24-110 (311)
262 2vrn_A Protease I, DR1199; cys 29.6 1.4E+02 0.0049 24.3 7.1 94 34-133 9-118 (190)
263 3f6c_A Positive transcription 29.5 98 0.0034 22.9 5.7 75 36-129 3-80 (134)
264 3qfe_A Putative dihydrodipicol 29.5 1.9E+02 0.0065 26.3 8.4 85 44-131 28-114 (318)
265 1wkv_A Cysteine synthase; homo 29.4 1.2E+02 0.0041 28.6 7.2 48 84-132 240-288 (389)
266 3ttv_A Catalase HPII; heme ori 29.4 1E+02 0.0036 31.8 7.1 94 34-133 600-702 (753)
267 2rgy_A Transcriptional regulat 29.3 2.1E+02 0.0072 24.6 8.6 85 35-132 9-99 (290)
268 1w3i_A EDA, 2-keto-3-deoxy glu 29.3 3.1E+02 0.011 24.5 10.1 129 43-182 15-146 (293)
269 1ejb_A Lumazine synthase; anal 29.2 2.4E+02 0.008 23.3 8.1 69 34-111 16-98 (168)
270 3bil_A Probable LACI-family tr 29.1 3.1E+02 0.011 24.5 11.0 84 36-132 68-154 (348)
271 1jdp_A NPR-C, atrial natriuret 29.1 1.6E+02 0.0055 27.4 8.2 94 25-131 146-246 (441)
272 3o1i_D Periplasmic protein TOR 29.1 2.7E+02 0.0094 23.8 9.8 86 35-132 6-96 (304)
273 3nhm_A Response regulator; pro 29.0 1.7E+02 0.0058 21.4 8.4 76 35-130 5-84 (133)
274 3pdi_B Nitrogenase MOFE cofact 28.7 2.8E+02 0.0095 26.6 9.9 80 33-129 312-399 (458)
275 3rot_A ABC sugar transporter, 28.7 2.3E+02 0.0079 24.5 8.8 78 47-133 19-96 (297)
276 2qzj_A Two-component response 28.6 1.8E+02 0.0063 21.6 8.1 74 35-129 5-81 (136)
277 1f6k_A N-acetylneuraminate lya 28.6 2.2E+02 0.0074 25.5 8.6 87 43-132 19-108 (293)
278 3gyb_A Transcriptional regulat 28.5 1.2E+02 0.004 26.1 6.7 80 35-132 6-88 (280)
279 3s99_A Basic membrane lipoprot 28.4 2.3E+02 0.0079 26.1 9.0 88 35-132 27-119 (356)
280 1mvo_A PHOP response regulator 28.4 1.8E+02 0.0061 21.4 8.7 76 34-129 3-81 (136)
281 3kkl_A Probable chaperone prot 28.3 1.8E+02 0.006 25.4 7.7 36 98-133 99-141 (244)
282 2nuw_A 2-keto-3-deoxygluconate 28.1 3.2E+02 0.011 24.3 9.6 84 43-132 15-100 (288)
283 3qk7_A Transcriptional regulat 28.1 2.8E+02 0.0095 23.9 9.2 73 46-132 25-97 (294)
284 3kto_A Response regulator rece 27.9 45 0.0015 25.2 3.4 75 35-129 7-86 (136)
285 2r91_A 2-keto-3-deoxy-(6-phosp 27.9 3.2E+02 0.011 24.2 9.8 85 42-132 13-99 (286)
286 3o74_A Fructose transport syst 27.5 2.8E+02 0.0094 23.3 11.6 74 46-132 17-91 (272)
287 1ys7_A Transcriptional regulat 27.4 2.2E+02 0.0074 23.5 8.1 75 35-129 8-85 (233)
288 2fn9_A Ribose ABC transporter, 27.3 2.9E+02 0.01 23.5 11.2 73 47-132 18-92 (290)
289 3ixl_A Amdase, arylmalonate de 27.2 3E+02 0.01 23.7 9.4 94 26-129 110-211 (240)
290 3e3m_A Transcriptional regulat 26.8 3.4E+02 0.012 24.2 12.1 83 35-130 71-156 (355)
291 3lua_A Response regulator rece 26.7 1.2E+02 0.0039 22.8 5.7 77 34-129 4-87 (140)
292 3r0j_A Possible two component 26.6 2.7E+02 0.0092 23.5 8.7 76 34-129 23-101 (250)
293 2q3b_A Cysteine synthase A; py 26.5 3.4E+02 0.012 24.1 9.8 96 26-132 107-208 (313)
294 2pju_A Propionate catabolism o 26.4 2.3E+02 0.0078 24.5 8.0 77 35-132 14-91 (225)
295 3a10_A Response regulator; pho 26.3 1.8E+02 0.006 20.7 8.9 75 36-130 3-80 (116)
296 3d8u_A PURR transcriptional re 26.3 2.9E+02 0.01 23.2 10.1 73 47-132 19-91 (275)
297 3nq4_A 6,7-dimethyl-8-ribityll 26.1 2.7E+02 0.0091 22.7 8.7 88 34-129 12-115 (156)
298 1rw7_A YDR533CP; alpha-beta sa 26.0 1.6E+02 0.0056 25.3 7.1 37 97-133 98-141 (243)
299 3rht_A (gatase1)-like protein; 26.0 1.2E+02 0.004 27.0 6.1 32 35-69 5-36 (259)
300 3lvj_C Sulfurtransferase TUSA; 26.0 1.3E+02 0.0046 21.3 5.4 58 2-67 8-65 (82)
301 1kgs_A DRRD, DNA binding respo 25.9 2.7E+02 0.0093 22.7 8.7 75 35-129 3-80 (225)
302 3c3m_A Response regulator rece 25.8 2.1E+02 0.007 21.3 8.0 76 35-129 4-83 (138)
303 3jte_A Response regulator rece 25.7 2.1E+02 0.0071 21.3 8.3 75 35-129 4-83 (143)
304 3m6m_D Sensory/regulatory prot 25.6 2.2E+02 0.0074 21.5 8.8 78 34-130 14-97 (143)
305 2rdm_A Response regulator rece 25.5 2E+02 0.0067 21.0 8.8 76 34-129 5-85 (132)
306 3dzd_A Transcriptional regulat 25.5 2.4E+02 0.0084 26.0 8.6 75 35-129 1-78 (368)
307 3kyj_B CHEY6 protein, putative 25.5 1.7E+02 0.0058 22.0 6.5 78 34-131 13-95 (145)
308 3uug_A Multiple sugar-binding 25.5 3.4E+02 0.012 23.7 12.2 77 46-133 18-94 (330)
309 3brs_A Periplasmic binding pro 24.8 3.2E+02 0.011 23.2 9.1 76 48-132 24-99 (289)
310 3hs3_A Ribose operon repressor 24.8 2E+02 0.007 24.6 7.6 80 35-132 11-94 (277)
311 3cf4_G Acetyl-COA decarboxylas 24.4 68 0.0023 26.3 4.0 34 31-66 31-65 (170)
312 2h3h_A Sugar ABC transporter, 24.2 3.5E+02 0.012 23.4 9.3 75 46-132 15-91 (313)
313 1fy2_A Aspartyl dipeptidase; s 24.2 2.8E+02 0.0094 23.7 8.2 108 4-132 2-122 (229)
314 3vc3_A Beta-cyanoalnine syntha 24.1 3.2E+02 0.011 24.9 9.1 39 93-132 189-228 (344)
315 1qpz_A PURA, protein (purine n 24.0 3.7E+02 0.013 23.7 11.6 86 35-132 59-147 (340)
316 3q9s_A DNA-binding response re 24.0 2.6E+02 0.0089 23.7 8.1 75 34-129 37-114 (249)
317 1tzj_A ACC deaminase, 1-aminoc 23.9 2.4E+02 0.0083 25.4 8.2 30 81-110 174-203 (338)
318 3e96_A Dihydrodipicolinate syn 23.8 1.9E+02 0.0065 26.2 7.3 83 43-130 28-113 (316)
319 3clk_A Transcription regulator 23.6 2.5E+02 0.0085 24.1 8.0 86 35-132 9-97 (290)
320 3smv_A S-(-)-azetidine-2-carbo 23.5 1.6E+02 0.0053 24.0 6.3 99 24-132 104-202 (240)
321 2pl1_A Transcriptional regulat 23.4 2E+02 0.007 20.4 8.4 74 36-129 2-78 (121)
322 3crn_A Response regulator rece 23.4 2.2E+02 0.0077 20.9 8.7 75 35-129 4-81 (132)
323 1s8n_A Putative antiterminator 23.4 2.7E+02 0.0091 22.5 7.8 75 35-129 14-91 (205)
324 2x7x_A Sensor protein; transfe 23.2 3.8E+02 0.013 23.5 11.5 73 49-132 23-96 (325)
325 3lkb_A Probable branched-chain 23.1 3E+02 0.01 24.8 8.7 59 64-132 47-106 (392)
326 1dbw_A Transcriptional regulat 23.1 2.2E+02 0.0074 20.6 7.9 76 34-129 3-81 (126)
327 3t8y_A CHEB, chemotaxis respon 23.0 2.6E+02 0.0091 21.6 9.6 78 35-131 26-106 (164)
328 2hmc_A AGR_L_411P, dihydrodipi 22.9 3.6E+02 0.012 24.8 9.1 85 42-132 41-127 (344)
329 2o20_A Catabolite control prot 22.8 3.9E+02 0.013 23.5 11.2 85 35-132 64-151 (332)
330 2rjo_A Twin-arginine transloca 22.8 3.9E+02 0.013 23.4 11.1 87 35-132 6-97 (332)
331 3dbi_A Sugar-binding transcrip 22.7 3.9E+02 0.013 23.5 12.0 73 47-132 79-152 (338)
332 2qu7_A Putative transcriptiona 22.6 1.4E+02 0.0046 25.8 5.9 82 36-132 10-93 (288)
333 3szu_A ISPH, 4-hydroxy-3-methy 22.4 4.6E+02 0.016 24.1 9.9 102 23-132 157-260 (328)
334 3bbl_A Regulatory protein of L 22.4 1.8E+02 0.0063 25.0 6.8 75 45-132 22-96 (287)
335 3tbh_A O-acetyl serine sulfhyd 22.2 3.5E+02 0.012 24.5 8.9 34 98-132 179-213 (334)
336 1yio_A Response regulatory pro 22.1 1.7E+02 0.0058 23.7 6.2 76 34-129 4-82 (208)
337 3sgw_A Ribose 5-phosphate isom 22.1 1.3E+02 0.0046 25.3 5.3 90 35-133 30-122 (184)
338 3sr3_A Microcin immunity prote 21.9 1.5E+02 0.0051 27.3 6.2 71 31-108 10-90 (336)
339 3czc_A RMPB; alpha/beta sandwi 21.9 1.3E+02 0.0043 22.7 4.8 30 34-65 18-49 (110)
340 3hp4_A GDSL-esterase; psychrot 21.9 2.9E+02 0.0099 21.6 8.6 66 34-106 2-75 (185)
341 1g8l_A Molybdopterin biosynthe 21.8 1.9E+02 0.0065 27.5 7.1 60 47-117 203-265 (411)
342 4fxs_A Inosine-5'-monophosphat 21.7 2.3E+02 0.0077 27.6 7.8 49 78-134 318-367 (496)
343 2oqr_A Sensory transduction pr 21.7 3.3E+02 0.011 22.2 8.7 74 35-129 5-81 (230)
344 3m3p_A Glutamine amido transfe 21.6 3.1E+02 0.01 23.9 8.0 82 34-133 3-92 (250)
345 2xed_A Putative maleate isomer 21.6 3.3E+02 0.011 23.9 8.3 90 34-132 146-242 (273)
346 3kcn_A Adenylate cyclase homol 21.5 2.7E+02 0.0091 21.0 8.6 75 34-129 4-82 (151)
347 3hdg_A Uncharacterized protein 21.4 2.5E+02 0.0085 20.6 7.7 75 35-129 8-85 (137)
348 1jdq_A TM006 protein, hypothet 21.1 1.9E+02 0.0064 21.4 5.5 58 2-67 24-81 (98)
349 1v95_A Nuclear receptor coacti 21.1 3E+02 0.01 21.6 7.0 56 37-105 13-68 (130)
350 4avf_A Inosine-5'-monophosphat 21.0 2.9E+02 0.01 26.7 8.4 48 78-133 316-364 (490)
351 3lfj_A Manxb, phosphotransfera 20.9 2.6E+02 0.009 23.4 7.0 75 25-116 40-114 (187)
352 2vk2_A YTFQ, ABC transporter p 20.8 3.2E+02 0.011 23.6 8.2 71 49-132 20-92 (306)
353 3l8h_A Putative haloacid dehal 20.7 3.1E+02 0.011 21.5 9.2 102 21-132 29-147 (179)
354 3dhf_A Nicotinamide phosphorib 20.7 2.7E+02 0.0091 27.2 7.9 72 35-112 306-390 (484)
355 3fg9_A Protein of universal st 20.6 2.8E+02 0.0095 21.3 7.0 67 50-130 81-156 (156)
356 2qsj_A DNA-binding response re 20.5 2.6E+02 0.0088 21.1 6.7 75 36-129 5-84 (154)
357 1sy7_A Catalase 1; heme oxidat 20.4 45 0.0016 34.4 2.4 97 34-133 534-638 (715)
358 2fvy_A D-galactose-binding per 20.4 4.1E+02 0.014 22.7 11.9 73 47-132 18-93 (309)
No 1
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=100.00 E-value=3.8e-74 Score=559.80 Aligned_cols=347 Identities=49% Similarity=0.761 Sum_probs=324.0
Q ss_pred cccceeeecccchhh---hhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 14 GNSDTLLLISNNCLY---YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 14 ~~~~~~~~~~~~~~l---~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
.+.+++||.+.-+.+ +.+ .++|++||||+++.+.+.+++.+.|+++| +++.+++++++|++|++++++++++.+
T Consensus 40 ~~y~I~~G~g~l~~l~~l~~~-~~~rvlIVtd~~v~~~~~~~v~~~L~~~g--~~~~~~~~~~gE~~kt~~~v~~~~~~l 116 (390)
T 3okf_A 40 RSYPISIGAGLFANPALLSLS-AKQKVVIVTNHTVAPLYAPAIISLLDHIG--CQHALLELPDGEQYKTLETFNTVMSFL 116 (390)
T ss_dssp GCEEEEEETTGGGCGGGGCCC-TTCEEEEEEETTTHHHHHHHHHHHHHHHT--CEEEEEEECSSGGGCBHHHHHHHHHHH
T ss_pred CCCCEEEeCCHHHhHHHHHhc-CCCEEEEEECCcHHHHHHHHHHHHHHHcC--CeEEEEEECCCcCCchHHHHHHHHHHH
Confidence 467889999874433 333 36899999999999999999999999988 888778899999999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehh
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 170 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~ 170 (365)
+++++||+|+|||||||+++|+|||+|++|++|+|+|+||||++|++||++|++++++.+.+||.+|.|+.|++||+||+
T Consensus 117 ~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rgip~I~IPTTlla~vDssvggkt~I~~~~~Kn~ig~f~~P~~ViiD~~ 196 (390)
T 3okf_A 117 LEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPKAVVIDTD 196 (390)
T ss_dssp HHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHHTSSSCEEEEEETTEEEEEEEECCCSEEEEEGG
T ss_pred HhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCCCCEEEeCCCCccccccCcCCeEEEEcCCCceEEeeccCCCEEEEcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchh
Q 017815 171 TLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 250 (365)
Q Consensus 171 l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~ 250 (365)
++.|+|++++++|++|++||+++.||++|++++.+...+.+.+.+.+.+++.+||..|.++++.|+++.|+|+.||||||
T Consensus 197 ~l~tlP~r~~~aG~~D~lkha~i~D~~~~~~l~~~~~~l~~~~~~~l~~~i~~s~~~K~~vV~~D~~E~g~R~~Ln~GHT 276 (390)
T 3okf_A 197 CLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESGIRALLNLGHT 276 (390)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--CGGGGGGTTHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHHHHHHhcCCchhhcccchhccchH
Confidence 99999999999999999999999999999999988777777788889999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCC
Q 017815 251 FGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADG 330 (365)
Q Consensus 251 ~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~ 330 (365)
|+||||...+|+.++|||+||+||.++++++.++|+++++..+++.++++++|+|+++++.++.+++++.|++|||++++
T Consensus 277 ~gHAiE~~~~~~~~~HGeaVaiGm~~~a~ls~~~g~~~~~~~~ri~~~l~~~glp~~~~~~~~~~~~~~~m~~DKK~~~g 356 (390)
T 3okf_A 277 FGHAIEAHMGYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQHMMRDKKVLAG 356 (390)
T ss_dssp HHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCCSCCTTCCHHHHHHHHTGGGTCCTT
T ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhhhcccCC
Confidence 99999998777678999999999999999999999999999999999999999999988657899999999999999999
Q ss_pred eEEEEeeCCCCcceEEccCCCHHHHHHHHHHHhc
Q 017815 331 LLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 364 (365)
Q Consensus 331 ~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~ 364 (365)
+++|+||++ ||++.+..+++++++.+++++++.
T Consensus 357 ~i~~vL~~~-iG~~~~~~~v~~~~l~~~l~~~~~ 389 (390)
T 3okf_A 357 ELRLVLPTS-IGTSAVVKGVPEAVIAQAIEYCRT 389 (390)
T ss_dssp CCEEEEEEE-TTEEEEEECCCHHHHHHHHHHTTC
T ss_pred EEEEEEECC-CCcEEEECCCCHHHHHHHHHHhcc
Confidence 999999998 999999889999999999988753
No 2
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=100.00 E-value=2e-72 Score=544.82 Aligned_cols=344 Identities=36% Similarity=0.532 Sum_probs=318.2
Q ss_pred cccceeeecccchhhhhcc-CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 14 GNSDTLLLISNNCLYYRHV-QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~-~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
+|.+++||.+.-+.+.++. ..+|++||||+++.+. .+++.+.|+++| +++.+++++++|++|++++++++++.+++
T Consensus 22 ~~~~I~~G~g~l~~l~~~l~~~~rvlIVtd~~v~~~-~~~v~~~L~~~g--~~~~~~~~~~gE~~kt~~~v~~~~~~l~~ 98 (368)
T 3qbe_A 22 PPYPVVIGTGLLDELEDLLADRHKVAVVHQPGLAET-AEEIRKRLAGKG--VDAHRIEIPDAEAGKDLPVVGFIWEVLGR 98 (368)
T ss_dssp SCEEEEEESCCHHHHHHHHTTCSEEEEEECGGGHHH-HHHHHHHHHHTT--CEEEEEECCSGGGGGBHHHHHHHHHHHHH
T ss_pred CCceEEEcCCHHHHHHHHHHcCCEEEEEECccHHHH-HHHHHHHHHhcC--CcceEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 7999999999855554432 2489999999999885 799999999999 88877889999999999999999999999
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhh
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTL 172 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~ 172 (365)
++++|.|+|||||||+++|+|||+|++|++|+|+|+||||++|++||+++++++++.+.+||.++.|+.|++||+||+++
T Consensus 99 ~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~vDssvggkt~V~~~~~Kn~ig~~~~P~~viiDp~~l 178 (368)
T 3qbe_A 99 IGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATL 178 (368)
T ss_dssp HTCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEECCCSEEEEEGGGG
T ss_pred cCCCCCcEEEEECChHHHHHHHHHHHHhccCCcEEEECCCCccccccCcCceEEEECCCCceeeccccCCCEEEEcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhHH
Q 017815 173 NTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFG 252 (365)
Q Consensus 173 ~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~~ 252 (365)
.|+|++++++|++|++||+++.||++|++++++...+.+.+.+.+.+++.++|..|.+++++|+++.|+|+.|||||||+
T Consensus 179 ~tlP~r~~~sG~ad~ik~~~i~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~Ka~vV~~D~~e~g~R~~Ln~GHT~g 258 (368)
T 3qbe_A 179 QTLPRDEMICGMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAADEKESELREILNYGHTLG 258 (368)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHCHHHHTCTTSSHHHHHHHHHHHHHHHHHHC----CCGGGGGGTTHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhCHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhccchHHH
Confidence 99999999999999999999999999999998776666655566889999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCCeE
Q 017815 253 HAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLL 332 (365)
Q Consensus 253 Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~~~ 332 (365)
||||...+| .++|||+||+||.++++++.++|+++++..+++.++++++|+|+++++ ++.++++++|++|||++++++
T Consensus 259 HAiE~~~~~-~~~HGeaVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~glp~~~~~-~~~~~~~~~m~~dkK~~~~~~ 336 (368)
T 3qbe_A 259 HAIERRERY-RWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDP-DALPQLLEIMAGDKKTRAGVL 336 (368)
T ss_dssp HHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTCCCCCCT-TCHHHHHHHHHTSTTCBTTBC
T ss_pred HHHHHhcCC-CCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHhhCccCCEE
Confidence 999999877 699999999999999999999999999999999999999999998875 789999999999999999999
Q ss_pred EEEeeCCCCcceEEccCCCHHHHHHHHHHHh
Q 017815 333 RLILLKGPLGNCVFTGDYDRKALDDTLYAFC 363 (365)
Q Consensus 333 ~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~ 363 (365)
+|+||++ ||++.+..+++++++.++++++.
T Consensus 337 ~~vl~~~-iG~~~~~~~~~~~~l~~a~~~~~ 366 (368)
T 3qbe_A 337 RFVVLDG-LAKPGRMVGPDPGLLVTAYAGVC 366 (368)
T ss_dssp EEEEESS-TTCEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEECC-CCcEEEECCCCHHHHHHHHHHhh
Confidence 9999999 99999988999999999999875
No 3
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=100.00 E-value=2.6e-68 Score=519.36 Aligned_cols=342 Identities=26% Similarity=0.367 Sum_probs=309.7
Q ss_pred cccceeeecccchhhhh---ccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 14 GNSDTLLLISNNCLYYR---HVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 14 ~~~~~~~~~~~~~~l~~---~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
+|.+++||.+.-+.+.+ +..++|++||||+++.+.+.+++.+.|+++ +++.+++++++|++|+++++.++++.+
T Consensus 11 ~~~~i~~G~g~l~~l~~~l~~~~~~k~liVtd~~v~~~~~~~v~~~L~~~---~~~~~~~~~~ge~~k~~~~v~~~~~~~ 87 (368)
T 2gru_A 11 RCFNFAFGEHVLESVESYIPRDEFDQYIMISDSGVPDSIVHYAAEYFGKL---APVHILRFQGGEEYKTLSTVTNLQERA 87 (368)
T ss_dssp EEEEEEEETTSGGGGGGTSCTTSCSEEEEEEETTSCHHHHHHHHHHHTTT---SCEEEEEECCSGGGCSHHHHHHHHHHH
T ss_pred CCceEEEeCCHHHHHHHHHhccCCCEEEEEECCcHHHHHHHHHHHHHHhc---cceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 47889999987444443 223689999999999999999999999765 345567889999999999999999999
Q ss_pred HHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehh
Q 017815 91 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 170 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~ 170 (365)
++++++|.|+|||||||+++|+|||+|++|++|+|+|+||||++|+|||++|++++|+.+.+||.+|.|++|++||+||+
T Consensus 88 ~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~tdS~v~~kt~I~~~~~Kn~ig~~~~P~~viiD~~ 167 (368)
T 2gru_A 88 IALGANRRTAIVAVGGGLTGNVAGVAAGMMFRGIALIHVPTTFLAASDSVLSIKQAVNLTSGKNLVGFYYPPRFVFADTR 167 (368)
T ss_dssp HHTTCCTTEEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEECCCSEEEEEHH
T ss_pred HhcCCCCCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCchHhhcCCCcCCeEEEECCCceeEeecCCCCCEEEEchH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred hhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchh
Q 017815 171 TLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 250 (365)
Q Consensus 171 l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~ 250 (365)
++.|+|++++++|++|++||+++.|+.+|++++.+...+.....+.+.+.+.+++..+.+++..|++++|+|+.+|+||+
T Consensus 168 ~l~tlP~~~~~aG~~d~lkha~i~d~~~~~~l~~~~~~l~~~~~~~l~~~i~~~~~~k~~~v~~d~~e~G~r~~ln~Ght 247 (368)
T 2gru_A 168 ILSESPPRQVKAGMCELVKNMLILENDNKEFTEDDLNSANVYSPKQLETFINFCISAKMSVLSEDIYEKKKGLIFEYGHT 247 (368)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHSCCSCCSCCGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHTTCTTSSSGGGGGGTTHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhHHHHHhhcHHHHHHHHHHHHHHHHHHhccCchhhCchhhhcchhH
Confidence 99999999999999999999999999998887654334444445678899999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhccc----
Q 017815 251 FGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKK---- 326 (365)
Q Consensus 251 ~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk---- 326 (365)
++|+||+.+++ +++||++||+||++++++++++|..+++.++++.++++++|+|+++++.++.+++++.|+.|||
T Consensus 248 ~~Haie~~~~~-~~~HGeavAigm~~~~~la~~~g~~~~~~~~~i~~ll~~~glP~~l~~~i~~~~~~~~~~~dkK~~~~ 326 (368)
T 2gru_A 248 IGHAIELAEQG-GITHGEAIAVGMIYAAKIANRMNLMPEHDVSAHYWLLNKIGALQDIPLKSDPDSIFHYLIHDNKRGYI 326 (368)
T ss_dssp HHHHHHHHTTT-SSCHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTTSCCCCCCHHHHHHHHHTCCSSSSS
T ss_pred HHHHHHHccCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCcCCCCHHHHHHHHHHhhccccc
Confidence 99999999876 7999999999999999999999998888999999999999999999765789999999999999
Q ss_pred -ccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHH
Q 017815 327 -VADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 360 (365)
Q Consensus 327 -~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~ 360 (365)
+++++++|+||++ ||++.+..+++++++.+++.
T Consensus 327 ~~~~~~~~~vll~~-iG~~~~~~~v~~~~~~~~~~ 360 (368)
T 2gru_A 327 KLDEDNLGMILLSG-VGKPAMYNQTLLTPVRKTLI 360 (368)
T ss_dssp BCSSSEEEECCEEE-TTEECCBTTBSCEEEEHHHH
T ss_pred cccCCEEEEEEEcC-CCceEEeCCCCHHHHHHHHH
Confidence 9999999999998 99999887788877776663
No 4
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=100.00 E-value=3.7e-67 Score=506.67 Aligned_cols=332 Identities=39% Similarity=0.593 Sum_probs=272.0
Q ss_pred cccceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc
Q 017815 14 GNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES 93 (365)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~ 93 (365)
.+.+++| +.-+.+.+ ++|++||||+++.+.+.+++.+.|++++ + .+++++++|++|++++++++++.++++
T Consensus 11 ~~~~i~~--g~l~~l~~---~~~~livtd~~v~~~~~~~v~~~L~~~~--~--~~~~~~~~e~~k~~~~v~~~~~~~~~~ 81 (343)
T 3clh_A 11 KNYKVFL--GELPEIKL---KQKALIISDSIVAGLHLPYLLERLKALE--V--RVCVIESGEKYKNFHSLERILNNAFEM 81 (343)
T ss_dssp SSCBEEE--SSCCCEEC---SSCEEEEEEHHHHTTTHHHHHTTEECSC--E--EEEEECSSGGGCSHHHHHHHHHHHHHT
T ss_pred CceEEEE--EehhhcCC---CCEEEEEECCcHHHHHHHHHHHHHHhCC--c--EEEEeCCCCCCCCHHHHHHHHHHHHhc
Confidence 3678888 43333333 5899999999998888999999887655 4 457789999999999999999999999
Q ss_pred CCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhhC
Q 017815 94 RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLN 173 (365)
Q Consensus 94 ~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~~ 173 (365)
+++|+|+||||||||++|+|||+|++|++|+|+|+||||++|++||+++++++++.+.+||.+|.|+.|++||+||+++.
T Consensus 82 ~~~r~d~iIavGGGsv~D~ak~~A~~~~rgip~i~IPTTlla~vDasvg~k~~v~~~~~Kn~ig~~~~P~~vi~D~~~l~ 161 (343)
T 3clh_A 82 QLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFHQPKAVYMDLAFLK 161 (343)
T ss_dssp TCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTSSSCEEEEEETTEEEEEEEECCCSEEEECTTSGG
T ss_pred CCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEeCCchhhccccccCCeEEEECcccccccccCCCCCEEEEcHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhHHH
Q 017815 174 TLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGH 253 (365)
Q Consensus 174 tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~~H 253 (365)
|+|++++++|++|++||+++.||.||++++++. .+. + +.+++.+++..+.+++.+|+.+.|+|..+|+||+++|
T Consensus 162 tlP~~~~~ag~~d~lkh~~i~d~~~~~~l~~~~---~~~--~-~~~~i~~~~~~k~~vv~~d~~e~g~r~~ln~gHt~~H 235 (343)
T 3clh_A 162 TLEKREFQAGVAEIIKMAVCFDKNLVERLETKD---LKD--C-LEEVIFQSVNIKAQVVVQDEKEQNIRAGLNYGHTFGH 235 (343)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSC---TTT--S-HHHHHHHHHHHHHHHC---------CTTTTTTHHHHH
T ss_pred cCCHHHHHhHHHHHHHHHHHcCHHHHHHHHhCc---CCH--H-HHHHHHHHHHHHHHHhccCchhhhHHHHHhhHHHHHH
Confidence 999999999999999999999999999987642 222 2 6789999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCCeEE
Q 017815 254 AIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLR 333 (365)
Q Consensus 254 ale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~~~~ 333 (365)
+||...+|++++||++||+||++++++++++|..+++.++++.++++++|+|+++++ ++.+++.+.|..|||+++++++
T Consensus 236 ale~~~~~~~~~HGeavAig~~~~~~la~~~g~~~~~~~~~i~~ll~~~glP~~l~~-~~~~~~~~~~~~dkk~~~~~~~ 314 (343)
T 3clh_A 236 AIEKETDYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKI-LDLQKFYERLFLDKKSENKTIK 314 (343)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHTTCCCCCC------------------------
T ss_pred HHHhhcCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCc-CCHHHHHHHHHHhhcccCCeEE
Confidence 999986665799999999999999999999998888899999999999999999986 5888999999999999999999
Q ss_pred EEeeCCCCcceEEccCCCHHHHHHHHHHH
Q 017815 334 LILLKGPLGNCVFTGDYDRKALDDTLYAF 362 (365)
Q Consensus 334 ~~l~~~~~g~~~~~~~~~~~~l~~~~~~~ 362 (365)
|+||++ ||++.+..+++++++.+++++|
T Consensus 315 ~vl~~~-iG~~~~~~~v~~~~l~~~~~~~ 342 (343)
T 3clh_A 315 FILPKG-VGAFEVASHIPKETIIKVLEKW 342 (343)
T ss_dssp CCEECS-SSCEECCCCCCHHHHHHHSTTC
T ss_pred EEEEcc-cCcEEEECCCCHHHHHHHHHHh
Confidence 999999 9999998789999999998765
No 5
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=100.00 E-value=1e-65 Score=505.22 Aligned_cols=348 Identities=35% Similarity=0.508 Sum_probs=301.8
Q ss_pred ecccccccccceeeeccc-chhh-----hhccCCceEEEEEccCchHHHHHHHHHHHhhC------CCCceEEEEEeCCC
Q 017815 7 LYKDRFFGNSDTLLLISN-NCLY-----YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRG------NPNVSVENVILPDG 74 (365)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~l-----~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~------g~~i~v~~~~~~~~ 74 (365)
|.++.|++|++++||.+. .+.+ +.+ +.+|++||||+++.+.+.+++.+.|+++ | +++..+.+++|
T Consensus 4 ~~~f~~~~~~~i~~G~g~~~~~l~~~~~~~~-~~~k~liVtd~~v~~~~~~~v~~~L~~~~~~~~~g--~~~~~~~~~~g 80 (393)
T 1sg6_A 4 PTKISILGRESIIADFGLWRNYVAKDLISDC-SSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPS--PRLLIYNRPPG 80 (393)
T ss_dssp CEEEEETTEEEEEEETTHHHHTHHHHHHHHS-CCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSC--CEEEEEEECSS
T ss_pred ceeEEecCCceEEEeCCccHHHHHHHHHHhc-CCCeEEEEECCcHHHHHHHHHHHHHHhhhccccCC--ceeEEEEeCCC
Confidence 678899999999999997 4433 333 3589999999999988999999999876 6 67665788999
Q ss_pred CCCCCHHHHHHHHHHHHHcC--CCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCC
Q 017815 75 ENYKNMDTLMKVFDKAIESR--LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLG 152 (365)
Q Consensus 75 e~~~~~~~v~~~~~~~~~~~--~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~ 152 (365)
|++|++++++++++.+++++ ++|+|+|||||||+++|+|||+|++|++|+|+|+||||++||+||++++++.++.+.+
T Consensus 81 E~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~~dasvg~kt~i~~~~~ 160 (393)
T 1sg6_A 81 EVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLG 160 (393)
T ss_dssp GGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCCCEEEECCchhhhhhcCcceEEeecCCCc
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcC-------C-------HHHHH
Q 017815 153 KNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-------D-------PRAFA 218 (365)
Q Consensus 153 k~~~~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~-------~-------~~~l~ 218 (365)
||++|.|++|++||+||+++.|+|++++++|++|++||+++.||.+|++++.+...+.+. . .+.+.
T Consensus 161 kn~~g~~~~P~~viiD~~~l~tlP~~~~~sG~aE~iK~~~i~d~~~~~~l~~~~e~~~~~~~~~~~d~~~a~~~i~~~l~ 240 (393)
T 1sg6_A 161 KNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILK 240 (393)
T ss_dssp EEEEEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCCCCTTSCTTGGGHHHHH
T ss_pred ccccccccCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHhhccccccchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987644332221 0 24577
Q ss_pred HHHHHHHHhhHhhhhcchhhhccccccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 017815 219 YAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNI 298 (365)
Q Consensus 219 ~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~l 298 (365)
+++.+++..+.+++..|++++|+|..+|+||+|+|+||..+++ +++||++||+||+..+++++++|..+++.++++.++
T Consensus 241 ~~i~~~~~~k~~~v~~d~~e~G~~~~l~~gHt~~Hale~~~~~-~~~HGeavAigm~~~~~la~~~g~~~~~~~~~i~~l 319 (393)
T 1sg6_A 241 ARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVAVSRIVKC 319 (393)
T ss_dssp HHHHHHHHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcChhhhcchhhhChHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888888999999999999999999999998655 799999999999999999999998888899999999
Q ss_pred HHHcCCCCCCCCC----------CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEc--cCCCHHHHHHHH
Q 017815 299 LQQAKLPTAPPDT----------MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFT--GDYDRKALDDTL 359 (365)
Q Consensus 299 l~~lglp~~~~~~----------i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~--~~~~~~~l~~~~ 359 (365)
++++|+|+++++. ++.+++++.|..|||+++++++|++|++ ||++... .+++++++.+++
T Consensus 320 l~~~glP~~l~~~gi~~~~~~~~~~~~~~~~~m~~dkk~~~~~~~~vl~~~-iG~~~~~~~~~v~~~~~~~~~ 391 (393)
T 1sg6_A 320 LAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSA-IGTPYETRASVVANEDIRVVL 391 (393)
T ss_dssp HHHTTCCCSTTCHHHHHHTTTCCCCHHHHHHHHHTCCE-------ECCEEE-TTEESSSSCEECCHHHHHHHC
T ss_pred HHHcCCCccchhhccccccccccCCHHHHHHHhhhcccccCCeEEEEEEcc-cCcEEEeCCCCCCHHHHHHHh
Confidence 9999999999864 3889999999999999999999999998 9998764 579999998875
No 6
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=100.00 E-value=7.9e-66 Score=499.83 Aligned_cols=338 Identities=33% Similarity=0.500 Sum_probs=281.1
Q ss_pred cccceeeecccchhhhhccCC-ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 14 GNSDTLLLISNNCLYYRHVQG-KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~-~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
+|++++||.+.-+.+.++... +|++||||+++.+.+.+++.+.| ++| ++.+++++++|++|++++++++++.+++
T Consensus 10 ~~~~i~~G~g~l~~l~~~l~~~~~~liVtd~~~~~~~~~~v~~~L-~~g---~~~~~~~~~~e~~p~~~~v~~~~~~~~~ 85 (354)
T 1xah_A 10 NNYPIYVEHGAIKYIGTYLNQFDQSFLLIDEYVNQYFANKFDDIL-SYE---NVHKVIIPAGEKTKTFEQYQETLEYILS 85 (354)
T ss_dssp CCCEEEEETTGGGHHHHHHTTCSCEEEEEEHHHHHHHHHHHC----------CEEEEEECSGGGGCSHHHHHHHHHHHHT
T ss_pred CCccEEEcCChHHHHHHHHHhcCeEEEEECCcHHHHHHHHHHHHH-hcC---CeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 588999999986555443222 79999999999988999999999 665 2445788999999999999999999999
Q ss_pred cCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhh
Q 017815 93 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTL 172 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~ 172 (365)
++++|+|+||||||||++|+|||+|++|++|+|+|+||||++|+ ||++++|++++.+.+||+.+.|+.|++||+||+++
T Consensus 86 ~~~~r~d~iIavGGGsv~D~ak~vA~~~~rgip~i~IPTT~~a~-ds~vg~K~~i~~~~~kn~~g~~~~P~~viiDp~~l 164 (354)
T 1xah_A 86 HHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAH-DSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFL 164 (354)
T ss_dssp TCCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSTTHH-HHTSSCEEEECCSSSTTCEEEECCCSEEEEEGGGG
T ss_pred cCCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEECCccccc-ccccCceEEEEcCCceeeeecCCCCcEEEEcHHHH
Confidence 99999999999999999999999999999999999999999888 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhh--hhh-cCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcch
Q 017815 173 NTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH--KLM-ARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGH 249 (365)
Q Consensus 173 ~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~--~~~-~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH 249 (365)
.|+|++++++|++|++||+++.||.||++++++.+ +.+ +. +.+.+.+.+++..+.+++.+|+.+.|.|..+|+||
T Consensus 165 ~tlP~~~~~aG~~d~lkha~i~De~~~~~~~~~~~~~~~~~a~--~~l~~~l~~~~~~~~~~~~~d~~e~g~r~~l~~gH 242 (354)
T 1xah_A 165 KTLPFKQILSGYAEVYKHALLNGESATQDIEQHFKDREILQSL--NGMDKYIAKGIETKLDIVVADEKEQGVRKFLNLGH 242 (354)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCSHHHHHHT--TTHHHHHHHHHHHHHHHHHHSTTSSSGGGGGGTTT
T ss_pred hhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhhhhhhhHH--HHHHHHHHHHHHHHHHHhccCchhhCCccccccHH
Confidence 99999999999999999999999999999887655 554 43 45778999999999999999999999999999999
Q ss_pred hHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccC
Q 017815 250 TFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVAD 329 (365)
Q Consensus 250 ~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~ 329 (365)
+++|+|| . |++++||++||+||++++++++.+|. +++.++++.++++++|+|+++++.++.+++++.|..|||+++
T Consensus 243 t~~Hale-~--~~~~~HG~avaig~~~~~~la~~~g~-~~~~~~~i~~l~~~~glP~~l~~~l~~~~~~~~~~~dkk~~~ 318 (354)
T 1xah_A 243 TFGHAVE-Y--YHKIPHGHAVMVGIIYQFIVANALFD-SKHDISHYIQYLIQLGYPLDMITDLDFETLYQYMLSDKKNDK 318 (354)
T ss_dssp HHHHHHH-H--HHCCCHHHHHHHHHHHHHHHHHHHTC-CCCCHHHHHHHHHHHTCCCC----------------------
T ss_pred HHHHHHh-c--CCCCCcHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCcCCCCCCCCCHHHHHHHHHHhHhhcC
Confidence 9999999 4 44699999999999999999999987 667789999999999999999854567889999999999999
Q ss_pred CeEEEEeeCCCCcceEEccCCCHHHHHHHHHHHhc
Q 017815 330 GLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 364 (365)
Q Consensus 330 ~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~ 364 (365)
++++|+||++ ||++.+.. ++++++.+++++|++
T Consensus 319 ~~~~~~l~~~-iG~~~~~~-~~~~~l~~~~~~~~~ 351 (354)
T 1xah_A 319 QGVQMVLMRQ-FGDIVVQH-VDQLTLQHACEQLKT 351 (354)
T ss_dssp -CBCCEEEEE-TTEEEECC-BCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcc-cCcEEEec-CCHHHHHHHHHHHHH
Confidence 9999999999 99999874 999999999998864
No 7
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=100.00 E-value=1.6e-65 Score=496.05 Aligned_cols=326 Identities=32% Similarity=0.421 Sum_probs=289.0
Q ss_pred ccceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcC
Q 017815 15 NSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR 94 (365)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~ 94 (365)
|.+++||.+.-+.+.++ ++|++||||+++.+ +.+++.+.|+ .+ +. ++++++|++|++++++++++.+++++
T Consensus 11 ~~~i~~G~g~l~~l~~~--~~kvliVtd~~v~~-~~~~v~~~L~-~~----~~-~~~~~ge~~~~~~~v~~~~~~~~~~~ 81 (348)
T 1ujn_A 11 PYPILVGEGVLKEVPPL--AGPAALLFDRRVEG-FAQEVAKALG-VR----HL-LGLPGGEAAKSLEVYGKVLSWLAEKG 81 (348)
T ss_dssp CEEEEEESCGGGGSCCC--SSCEEEEEEGGGHH-HHHHHHHHHT-CC----CE-EEECCSGGGSSHHHHHHHHHHHHHHT
T ss_pred CeeEEEcCChHHhhHhh--CCEEEEEECCcHHH-HHHHHHHHhc-cC----eE-EEECCCCCCCCHHHHHHHHHHHHHcC
Confidence 78999999976666665 68999999999999 9999999997 44 34 67899999999999999999999999
Q ss_pred CCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhhCC
Q 017815 95 LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNT 174 (365)
Q Consensus 95 ~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~~t 174 (365)
++|.|+||||||||++|+|||+|++|++|+|+|+||||++|++||+++++++++.+.+||.++.|+.|++||+||+++.|
T Consensus 82 ~~r~d~IIavGGGsv~D~ak~~A~~~~rgip~i~IPTTlla~vds~~g~k~~i~~~~~kn~ig~~~~P~~vi~D~~~l~t 161 (348)
T 1ujn_A 82 LPRNATLLVVGGGTLTDLGGFVAATYLRGVAYLAFPTTTLAIVDASVGGKTGINLPEGKNLVGAFHFPQGVYAELRALKT 161 (348)
T ss_dssp CCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEECCCSEEEEEGGGGGG
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhccCCCEEEecCcHHHhhccccCceEEEecCCcceeeccCcCCCEEEECHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhcHHHHHHHHHccChhHH---HHHHHhhhhhhcCCHHHHHHHHHHHHHhhHhhhhcchhhhccccccCcchhH
Q 017815 175 LPDRELASGLAEVIKYGLIRDAEFF---EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTF 251 (365)
Q Consensus 175 lP~~~~~sG~~D~lkha~~~d~~~~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~~l~~gH~~ 251 (365)
+|++++++|++|++||+++.||.|| ++++++. +.+.+++.+++..+.+++..|+++.|+|..+|+||++
T Consensus 162 lP~~~~~aG~~d~lkh~~i~d~~~~~~~~~l~~~~--------~~l~~~i~~~~~~k~~~v~~d~~e~g~r~~ln~GHt~ 233 (348)
T 1ujn_A 162 LPLPTFKEGLVEAFKHGLIAGDEALLKVEDLTPQS--------PRLEAFLARAVAVKVRVTEEDPLEKGKRRLLNLGHTL 233 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCGGGGCCTTCCTTC--------TTHHHHHHHHHHHHHHHHHHCTTSSSGGGGGGTTHHH
T ss_pred CCHHHHHhHHHHHHHHHHHcCHHHhcchHHHHhhH--------HHHHHHHHHHHHHHHHHhhcCchhhchhhHhcchHHH
Confidence 9999999999999999999999999 7665432 2367899999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhcccccCCe
Q 017815 252 GHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGL 331 (365)
Q Consensus 252 ~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lglp~~~~~~i~~~~~~~~l~~dkk~~~~~ 331 (365)
+|+||..++| +++||++||+||++++++++++| +++.++++.++++++| |+++++ ++.++++++|+.|||+++++
T Consensus 234 ~Hale~~~~~-~~~HGeavAig~~~~~~la~~~g--~~~~~~~i~~ll~~~g-P~~l~~-~~~~~~~~~~~~dkk~~~~~ 308 (348)
T 1ujn_A 234 GHALEAQTRH-ALPHGMAVAYGLLYAALLGRALG--GEDLLPPVRRLLLWLS-PPPLPP-LAFEDLLPYLLRDKKKVSES 308 (348)
T ss_dssp HHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHC-CCCCCC-CCHHHHGGGC---------C
T ss_pred HHHHHhccCC-CCChHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhC-CCCCCc-CCHHHHHHHHHHHHheeCCe
Confidence 9999998666 69999999999999999999988 5667999999999999 999986 78999999999999999999
Q ss_pred EEEEeeCCCCcceEEccCCCHHHHHHHHHHHhc
Q 017815 332 LRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 364 (365)
Q Consensus 332 ~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~ 364 (365)
++|++|++ ||++.+...+ .+++.+++++|+.
T Consensus 309 ~~~~ll~~-iG~~~~~~~~-~~~l~~~~~~~~~ 339 (348)
T 1ujn_A 309 LHWVVPLA-PGRLVVRPLP-EGLLREAFAAWRE 339 (348)
T ss_dssp CCEEEEEE-TTEEEEECCC-HHHHHHHHHHHHH
T ss_pred EEEEEEcC-CCceEEecCC-HHHHHHHHHHHHH
Confidence 99999999 9999987544 4599999887753
No 8
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=100.00 E-value=2.6e-48 Score=381.25 Aligned_cols=324 Identities=15% Similarity=0.144 Sum_probs=242.3
Q ss_pred ccccccccceeeeccc----chhhhhccCCceEEEEEccCchHH---HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHH
Q 017815 9 KDRFFGNSDTLLLISN----NCLYYRHVQGKKVLVVTNNTVAPL---YLDKVTDALTRGNPNVSVENVILPDGENYKNMD 81 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~livtd~~~~~~---~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~ 81 (365)
++.|+.|++++||.+. ++++++++ .+|++||||+++.+. +.+++.+.|+++| +++ .+|++++++|+++
T Consensus 5 ~~~~~~p~~i~~G~g~~~~l~~~l~~~g-~~~~livtd~~~~~~~~g~~~~v~~~L~~~g--~~~--~~~~~~~~~p~~~ 79 (387)
T 3bfj_A 5 MFDYLVPNVNFFGPNAISVVGERCQLLG-GKKALLVTDKGLRAIKDGAVDKTLHYLREAG--IEV--AIFDGVEPNPKDT 79 (387)
T ss_dssp CEEEECCSEEEESTTGGGGHHHHHHHTT-CSEEEEECCTTTC--CCSSHHHHHHHHHHTT--CEE--EEECCCCSSCBHH
T ss_pred ceeeeCCCeEEECCCHHHHHHHHHHHcC-CCEEEEEECcchhhccchHHHHHHHHHHHcC--CeE--EEECCccCCCCHH
Confidence 4578999999999987 34445542 489999999999988 8999999999988 664 5678999999999
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH---------hh-------cCCcEEEeccccccccccccCCce
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---------YL-------RGVSFIQIPTTVMAQVDSSVGGKT 145 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~---------~~-------~g~p~i~IPTTl~A~~~s~~~~~~ 145 (365)
+++++++.++++++| +||||||||++|+||++|+. |. +++|+|+|||| ++|||++++++
T Consensus 80 ~v~~~~~~~~~~~~d---~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT--~gtgSevt~~a 154 (387)
T 3bfj_A 80 NVRDGLAVFRREQCD---IIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTT--AGTASEVTRHC 154 (387)
T ss_dssp HHHHHHHHHHHTTCC---EEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECS--TTCCGGGCSEE
T ss_pred HHHHHHHHHHhcCCC---EEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCC--CCccccccCcE
Confidence 999999999999998 99999999999999999987 54 79999999999 58999999999
Q ss_pred EEecCCC--cceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHH
Q 017815 146 GINHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAI 221 (365)
Q Consensus 146 ~i~~~~~--k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i 221 (365)
+++.+.+ |+.++ .++.|+++|+||+++.|+|++++++|++|+|+|++ +.|++...+..++.++.. .+.+.+.+
T Consensus 155 vi~~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~hai---E~~~s~~~~~~~d~~a~~ai~~i~~~l 231 (387)
T 3bfj_A 155 VLTNTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMDALTHAV---EAYISKDANPVTDAAAMQAIRLIARNL 231 (387)
T ss_dssp EEEETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCceeeccCCccccCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998654 78777 57899999999999999999999999999999999 777654332223322211 12222333
Q ss_pred HHHHHhhHhh-----hhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHH------------HHHH
Q 017815 222 KRSCENKAEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMA------------VDMS 281 (365)
Q Consensus 222 ~~~~~~~~~~-----v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~------------~~l~ 281 (365)
.+++++..+. +......+|+.. .++++|+++|+|+.. | +++||++||++|+.. .+++
T Consensus 232 ~~~v~d~~d~~ar~~~~~as~laG~a~~~~g~~~~Hai~h~l~~~--~-~i~HG~avai~lp~v~~~~~~~~~~~~~~la 308 (387)
T 3bfj_A 232 RQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGGL--Y-DMPHGVANAVLLPHVARYNLIANPEKFADIA 308 (387)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHccCcHHHHHhhhHHhcC--c-CCChHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333321111 111123344431 245678888888876 5 799999999999985 4577
Q ss_pred HHcCCC---------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCC
Q 017815 282 YRLGWI---------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYD 351 (365)
Q Consensus 282 ~~~g~~---------~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~ 351 (365)
+.+|.. .++.++++.+|++++|+|++++++ ++++++.+......+. ... .+. -..++
T Consensus 309 ~~lg~~~~~~~~~~~~~~~~~~i~~l~~~~glp~~l~~~gi~~~~~~~~a~~a~~~--~~~--------~~n---p~~~~ 375 (387)
T 3bfj_A 309 ELMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRDLGVKETDFPYMAEMALKD--GNA--------FSN---PRKGN 375 (387)
T ss_dssp HHTTCCCTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGGTCCGGGHHHHHHHHHHS--GGG--------TTC---SSCCC
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC--ccc--------cCC---CCCCC
Confidence 777754 145689999999999999999887 8888775443332211 110 111 02677
Q ss_pred HHHHHHHHHH
Q 017815 352 RKALDDTLYA 361 (365)
Q Consensus 352 ~~~l~~~~~~ 361 (365)
.+++.+.+++
T Consensus 376 ~~~i~~i~~~ 385 (387)
T 3bfj_A 376 EQEIAAIFRQ 385 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888865
No 9
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=100.00 E-value=1.9e-48 Score=382.05 Aligned_cols=323 Identities=19% Similarity=0.196 Sum_probs=245.8
Q ss_pred ccccccceeeecccc----hhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHH
Q 017815 11 RFFGNSDTLLLISNN----CLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK 85 (365)
Q Consensus 11 ~~~~~~~~~~~~~~~----~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~ 85 (365)
.|+.|++++||.+.- +.+++++ .+|++||||+++.+. +.+++.+.|+++| +++ .+|++++++|+++++++
T Consensus 5 ~f~~p~~i~~G~g~~~~l~~~l~~~g-~~~~livtd~~~~~~g~~~~v~~~L~~~g--~~~--~~~~~~~~~p~~~~v~~ 79 (386)
T 1rrm_A 5 RMILNETAWFGRGAVGALTDEVKRRG-YQKALIVTDKTLVQCGVVAKVTDKMDAAG--LAW--AIYDGVVPNPTITVVKE 79 (386)
T ss_dssp EEECCSEEEESTTGGGGHHHHHHHHT-CCEEEEECBHHHHHTTHHHHHHHHHHHTT--CEE--EEECBCCSSCBHHHHHH
T ss_pred cccCCceEEECcCHHHHHHHHHHHcC-CCEEEEEECcchhhchHHHHHHHHHHHcC--CeE--EEECCccCCCCHHHHHH
Confidence 799999999999874 4444443 589999999999887 8999999999988 654 56789999999999999
Q ss_pred HHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh------------------hcCCcEEEeccccccccccccCCceEE
Q 017815 86 VFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSVGGKTGI 147 (365)
Q Consensus 86 ~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~------------------~~g~p~i~IPTTl~A~~~s~~~~~~~i 147 (365)
+++.++++++| +||||||||++|+||++|+.+ .+++|+|+|||| ++|||++++++++
T Consensus 80 ~~~~~~~~~~d---~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT--~gtgSevt~~avi 154 (386)
T 1rrm_A 80 GLGVFQNSGAD---YLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTT--AGTAAEVTINYVI 154 (386)
T ss_dssp HHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECS--SSCCTTTCSEEEE
T ss_pred HHHHHHhcCcC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCC--CCchhhhCCcEEE
Confidence 99999999998 999999999999999999988 679999999999 5899999999999
Q ss_pred ecCCC--cceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCH-HHHHHHHHH
Q 017815 148 NHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKR 223 (365)
Q Consensus 148 ~~~~~--k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~-~~l~~~i~~ 223 (365)
+.+.+ |+.++ .++.|++||+||+++.|+|++++++|++|+|+|++ +.|++...+..++.++... +.+.+.+.+
T Consensus 155 ~~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---E~~~s~~~~~~~d~~a~~a~~~i~~~l~~ 231 (386)
T 1rrm_A 155 TDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAI---EGYITRGAWALTDALHIKAIEIIAGALRG 231 (386)
T ss_dssp EETTTTEEEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCeeEeecCCccccCEEEEChhhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 98654 78777 57899999999999999999999999999999999 7777543322233322111 223333344
Q ss_pred HHHhh---Hhhhhcchhhhccc---cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHH------------HHHHHcC
Q 017815 224 SCENK---AEVVSLDEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAV------------DMSYRLG 285 (365)
Q Consensus 224 ~~~~~---~~~v~~d~~~~g~r---~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~------------~l~~~~g 285 (365)
++... .+.+......+|+. ..++++|+++|+|+.. | +++||++||++|+..+ ++++.+|
T Consensus 232 ~~~~d~~ar~~~~~as~laG~a~~~~g~g~~H~i~h~l~~~--~-~i~HG~avai~lp~~~~~~~~~~~~~~~~la~~~g 308 (386)
T 1rrm_A 232 SVAGDKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMRYNADFTGEKYRDIARVMG 308 (386)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHTT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHccCcHHHHHhccHHhcC--c-CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhC
Confidence 33310 00111112335653 1345789999999987 5 7999999999999874 5677777
Q ss_pred CC---------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHH
Q 017815 286 WI---------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKAL 355 (365)
Q Consensus 286 ~~---------~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l 355 (365)
.. .++.++++.+|++++|+|+++++. ++.+++.+......+. ... .+. -..++.+++
T Consensus 309 ~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~l~~~gi~~~~~~~~a~~a~~~--~~~--------~~n---p~~~~~~~i 375 (386)
T 1rrm_A 309 VKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDD--VCT--------GGN---PREATLEDI 375 (386)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTC--GGG--------GGC---SSCCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHhcCCCHHHHHHHHHHHHhc--ccc--------cCC---CCCCCHHHH
Confidence 53 135689999999999999999987 8888875544433221 110 011 126778888
Q ss_pred HHHHHHH
Q 017815 356 DDTLYAF 362 (365)
Q Consensus 356 ~~~~~~~ 362 (365)
.+.+++-
T Consensus 376 ~~i~~~~ 382 (386)
T 1rrm_A 376 VELYHTA 382 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888653
No 10
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=100.00 E-value=1.8e-48 Score=378.11 Aligned_cols=319 Identities=16% Similarity=0.163 Sum_probs=244.1
Q ss_pred ecccccccccceeeecccc----hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHH
Q 017815 7 LYKDRFFGNSDTLLLISNN----CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDT 82 (365)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~ 82 (365)
|.++.|+.|++++||.+.- +.+++++ .+|++||+|+++.+.+.+++.+.|+++| +++..+ .. +++|++++
T Consensus 4 M~~~~~~~p~~i~~G~g~~~~l~~~l~~~g-~~~~livtd~~~~~~~~~~v~~~L~~~g--~~~~~~--~~-~~~~~~~~ 77 (354)
T 3ce9_A 4 GISHRIAIPLILEVGNNKIYNIGQIIKKGN-FKRVSLYFGEGIYELFGETIEKSIKSSN--IEIEAV--ET-VKNIDFDE 77 (354)
T ss_dssp --CCCCCCCSEEEEESSCGGGHHHHHGGGT-CSEEEEEEETTHHHHHHHHHHHHHHTTT--CEEEEE--EE-ECCCBHHH
T ss_pred eeeeEEeCCcEEEECCCHHHHHHHHHHhcC-CCeEEEEECccHHHHHHHHHHHHHHHcC--CeEEEE--ec-CCCCCHHH
Confidence 5678899999999999874 4445542 4899999999999889999999999988 776443 33 67889999
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCc
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQP 162 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P 162 (365)
++++ +.+++.++| +||||||||++|+||++| +++++|+|+|||| ++|||++++.++++.+++|+.++ ++.|
T Consensus 78 v~~~-~~~~~~~~d---~IIavGGGsv~D~aK~vA--~~~~~p~i~IPTT--~~tgse~t~~avi~~~~~K~~i~-~~~P 148 (354)
T 3ce9_A 78 IGTN-AFKIPAEVD---ALIGIGGGKAIDAVKYMA--FLRKLPFISVPTS--TSNDGFSSPVASLLINGKRTSVP-AKTP 148 (354)
T ss_dssp HHHH-HTTSCTTCC---EEEEEESHHHHHHHHHHH--HHHTCCEEEEESC--CSSGGGTSSEEEEEETTEEEEEE-CCCC
T ss_pred HHHH-HHhhhcCCC---EEEEECChHHHHHHHHHH--hhcCCCEEEecCc--ccCCCCCCCceEEEeCCceeeec-CCCC
Confidence 9999 999888777 999999999999999996 7799999999999 47899999999999888888885 8999
Q ss_pred cEEEEehhhhCCCCHHHHHhcHHHHHHHH-HccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHhh-Hhhhh-------
Q 017815 163 QCVLVDTDTLNTLPDRELASGLAEVIKYG-LIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENK-AEVVS------- 233 (365)
Q Consensus 163 ~~viiD~~l~~tlP~~~~~sG~~D~lkha-~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~~~v~------- 233 (365)
+.||+||+++.|+|++++++|++|++.|+ .+.||.+++++.+..... ..+.+.+...+.+..+ ...+.
T Consensus 149 ~~vi~Dp~ll~tlP~~~~~~g~~Dal~h~~~~~d~~~~~~~~~~~~~~---~~~~la~~~~~~i~~~l~~~~~~~~~~~~ 225 (354)
T 3ce9_A 149 DGIVVDIDVIKGSPEKFIYSGIGDLVSNITALYDWKFEEENHKSIIDD---FAVMISKKSVNSFVRTDFKSIKDEVFLKE 225 (354)
T ss_dssp SEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCH---HHHHHHHHHHHHHHHCCCSCTTCHHHHHH
T ss_pred cEEEEcHHHHHhCCHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHHHHhHHHHhcCHHHHHH
Confidence 99999999999999999999999999544 456777776654321000 1123333333333333 11111
Q ss_pred --cchhhhccc--------cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 017815 234 --LDEKESGLR--------ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAK 303 (365)
Q Consensus 234 --~d~~~~g~r--------~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ll~~lg 303 (365)
.....+|+. +.++++|+++|+||...++ +++||++||+|+.++.+++. +..+++.++++++|
T Consensus 226 ~l~a~~~aG~a~~~~g~~r~~~g~~H~i~hal~~~~~~-~~~HG~avai~~~~~~~~~~-------~~~~~i~~l~~~~g 297 (354)
T 3ce9_A 226 LVDSLTMNGIAMEIAGNSSPASGAEHLISHALDKFLPN-PQLHGIQVGVATYIMSKVHK-------HREERIKKILSDTG 297 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSTTTCSHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHHHT-------SSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCCCcccchHHHHhHHHHhCCCC-CCCcHHHHHHHHHHHHHHcc-------ccHHHHHHHHHHCC
Confidence 112223332 2346899999999987544 79999999999877666653 24689999999999
Q ss_pred CCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 304 LPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 304 lp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
+|+++++. ++.+++.+.+..++|+++++ +++++. ..++++++.+.+++
T Consensus 298 lP~~l~~~gi~~~~~~~~~~~~~~~~~~~--~~~~~p--------~~~~~~~~~~i~~~ 346 (354)
T 3ce9_A 298 FFNYVKGLNMKKSDFKRAISEAHLIKPAR--YTYLHV--------EKNCETAKEIVDTD 346 (354)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHSTTS--CCGGGS--------HHHHHHHHHHHHHC
T ss_pred CCCCHHHcCCCHHHHHHHHHHHHHhccCc--eeecCC--------CCCCHHHHHHHHHh
Confidence 99999886 89999999999999987665 333332 15667777777754
No 11
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=100.00 E-value=3.4e-46 Score=364.09 Aligned_cols=318 Identities=22% Similarity=0.253 Sum_probs=237.3
Q ss_pred ccccccccceeeecccchhh----hhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHH
Q 017815 9 KDRFFGNSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLM 84 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~ 84 (365)
.+.|+.|++++||.+.-+.+ +++ ++|++||||+++.+.+.+++.+.|++.| +++. +..+++|+ +.++++
T Consensus 4 ~~~~~~p~~i~~G~g~~~~l~~~l~~~--g~~~livtd~~~~~~~~~~v~~~L~~~g--~~~~-~~~~~ge~--~~~~v~ 76 (370)
T 1jq5_A 4 ERVFISPAKYVQGKNVITKIANYLEGI--GNKTVVIADEIVWKIAGHTIVNELKKGN--IAAE-EVVFSGEA--SRNEVE 76 (370)
T ss_dssp CBCCCCCSEEEEETTGGGGHHHHHTTT--CSEEEEEECHHHHHHTHHHHHHHHHTTT--CEEE-EEECCSSC--BHHHHH
T ss_pred eeEecCCCeEEECcCHHHHHHHHHHHc--CCeEEEEEChHHHHHHHHHHHHHHHHcC--CeEE-EEeeCCCC--CHHHHH
Confidence 46789999999999974444 444 4899999999998888999999999888 7764 34456654 779999
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeeccC--Cc
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY--QP 162 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~--~P 162 (365)
++++.++++++| +||||||||++|+||++| +++++|+|+|||| |+|||++|++++++.+.+|+..+.++ .|
T Consensus 77 ~~~~~~~~~~~d---~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTT--a~tgSevt~~avi~~~~~~~k~~~~~~~~P 149 (370)
T 1jq5_A 77 RIANIARKAEAA---IVIGVGGGKTLDTAKAVA--DELDAYIVIVPTA--ASTDAPTSALSVIYSDDGVFESYRFYKKNP 149 (370)
T ss_dssp HHHHHHHHTTCS---EEEEEESHHHHHHHHHHH--HHHTCEEEEEESS--CCSSCTTCSEEEEECTTSCEEEEEECSSCC
T ss_pred HHHHHHHhcCCC---EEEEeCChHHHHHHHHHH--HhcCCCEEEeccc--cCCCcccCCeEEEEcCCCceEeeccCCCCC
Confidence 999999999998 999999999999999996 6799999999999 89999999999999888887776665 89
Q ss_pred cEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcC--C--HHHHH--------HHHHHHHH-hhH
Q 017815 163 QCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR--D--PRAFA--------YAIKRSCE-NKA 229 (365)
Q Consensus 163 ~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~--~--~~~l~--------~~i~~~~~-~~~ 229 (365)
++||+||+++.|+|++++++|++|+|+|++ +.|++...+..+ +... . .+.+. +.+.+++. .+.
T Consensus 150 ~~viiDp~ll~tlP~~~~a~g~~Dal~h~~---E~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~k~ 225 (370)
T 1jq5_A 150 DLVLVDTKIIANAPPRLLASGIADALATWV---EARSVIKSGGKT-MAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKA 225 (370)
T ss_dssp SEEEEEHHHHHTSCHHHHHHHHHHHHHHHH---HHHHHHHHTCCC-TTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEChHHHHhCCHHHHHHHHHHHHHHHH---HHHHhhhcCCcc-cccccccHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 999999999999999999999999999998 676654322111 0000 0 01111 11111110 111
Q ss_pred hhhhcc--------hhhhccccccCcchhHHHHhhhccC-----CCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 017815 230 EVVSLD--------EKESGLRATLNLGHTFGHAIETGFG-----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVH 296 (365)
Q Consensus 230 ~~v~~d--------~~~~g~r~~l~~gH~~~Hale~~~~-----~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~ 296 (365)
....++ ...+|+ .++|+||+++|+|++.++ +.+++||++||+|+++.+.++ ..+++.++++.
T Consensus 226 ~~~~~ar~~~~~a~~~~aG~-a~~n~g~~~~Hai~~~l~~~~~~~~~i~HG~ava~g~~~~~~~~----~~~~~~~~~i~ 300 (370)
T 1jq5_A 226 KVVTPALEAVVEANTLLSGL-GFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALE----EHSQQEIERYI 300 (370)
T ss_dssp TCCCHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHGGGSCSGGGGSCHHHHHHHHHHHHHHHS----CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhHH-HhhccccHHHHHHhhHhhccccCCCCCCcHHHHHHHHHHHHHHc----cCcHHHHHHHH
Confidence 111111 135788 577889999999988752 236999999999999887663 23577899999
Q ss_pred HHHHHcCCCCCCCCC-CC---HHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHHH
Q 017815 297 NILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 362 (365)
Q Consensus 297 ~ll~~lglp~~~~~~-i~---~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~ 362 (365)
++++++|+|+++++. ++ .+++.+ .+++.... +.. +|. ..+++++++.+.+++.
T Consensus 301 ~l~~~~glP~~l~~~gi~~~~~~~~~~---~a~~a~~~------~~~-~~~---p~~~~~~~i~~il~~~ 357 (370)
T 1jq5_A 301 ELYLCLDLPVTLEDIKLKDASREDILK---VAKAATAE------GET-IHN---AFNVTADDVADAIFAA 357 (370)
T ss_dssp HHHHHTTCCCSTTTTTCTTCCHHHHHH---HHHHHTST------TCG-GGG---TCCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHcCCCcccHHHHHH---HHHHHhCc------chh-hhC---CCCCCHHHHHHHHHHH
Confidence 999999999999886 65 566543 33333211 111 343 2378899998888653
No 12
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=100.00 E-value=2.4e-46 Score=369.32 Aligned_cols=330 Identities=15% Similarity=0.174 Sum_probs=242.9
Q ss_pred eecccccccccceeeecccch----hhhhccCCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCC
Q 017815 6 LLYKDRFFGNSDTLLLISNNC----LYYRHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKN 79 (365)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~ 79 (365)
-|.++.|+.|++++||.+.-+ .+++++ .+|++||||+...+. +.+++.+.|+++| +++ .+|++++++|+
T Consensus 12 ~~~~f~~~~p~~i~~G~g~l~~l~~~l~~~g-~~r~liVtd~~~~~~~g~~~~v~~~L~~~g--~~~--~~f~~v~~~p~ 86 (407)
T 1vlj_A 12 HMENFVFHNPTKIVFGRGTIPKIGEEIKNAG-IRKVLFLYGGGSIKKNGVYDQVVDSLKKHG--IEW--VEVSGVKPNPV 86 (407)
T ss_dssp CCCCEEECCCCEEEESTTCGGGHHHHHHHTT-CCEEEEEECSSHHHHSSHHHHHHHHHHHTT--CEE--EEECCCCSSCB
T ss_pred ccCCceEecCCeEEECcCHHHHHHHHHHHcC-CCeEEEEECchHHhhccHHHHHHHHHHHcC--CeE--EEecCccCCCC
Confidence 478899999999999999744 444442 489999999554444 8999999999988 665 46889999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----------------hcCCcEEEeccccccccccccCC
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGG 143 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----------------~~g~p~i~IPTTl~A~~~s~~~~ 143 (365)
+++++++++.++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||++++
T Consensus 87 ~~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT--agtgSevt~ 161 (407)
T 1vlj_A 87 LSKVHEAVEVAKKEKVE---AVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTI--SATGTEMNG 161 (407)
T ss_dssp HHHHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECS--CSSCGGGSS
T ss_pred HHHHHHHHHHHHhcCCC---EEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCC--CCcchhhcC
Confidence 99999999999999998 999999999999999999875 279999999999 689999999
Q ss_pred ceEEecCC--Ccceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHH
Q 017815 144 KTGINHRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAY 219 (365)
Q Consensus 144 ~~~i~~~~--~k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~ 219 (365)
+++++.+. .|+.++ .++.|+++|+||+++.|+|++++++|++|+|+|++ |.|++...+..++.++.. .+.+.+
T Consensus 162 ~avi~~~~~~~K~~i~~~~~~P~~ai~Dp~l~~tlP~~~~aag~~Dal~hai---E~~~s~~~~~~~d~~a~~ai~~i~~ 238 (407)
T 1vlj_A 162 NAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHIL---EYYFDGSSPEISNEIAEGTIRTIMK 238 (407)
T ss_dssp EEEEEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHH---HHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCeEEEecCCCccceEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999764 477775 46899999999999999999999999999999999 666654111122222211 122334
Q ss_pred HHHHHHHhhHhh-----hhcchhhhccccccC--------cchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH-------
Q 017815 220 AIKRSCENKAEV-----VSLDEKESGLRATLN--------LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------- 279 (365)
Q Consensus 220 ~i~~~~~~~~~~-----v~~d~~~~g~r~~l~--------~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------- 279 (365)
.+.+++.+..+. +......+|+. ++| .+|+++|+|+.. | +++||++||++|+..++
T Consensus 239 ~l~~a~~d~~d~~aR~~m~~as~lag~a-~~~~g~~~~~~~~Hai~h~l~~~--~-~i~HG~a~ai~lp~v~~~~~~~~~ 314 (407)
T 1vlj_A 239 MTERLIEKPDDYEARANLAWSATIALNG-TMAVGRRGGEWACHRIEHSLSAL--Y-DIAHGAGLAIVFPAWMKYVYRKNP 314 (407)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTSS-TTTTTSCSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGSH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHhcCCCCCcchhHHHhhHHHhC--c-CCChHHHHHHHHHHHHHHhhhhcH
Confidence 444444332111 11112334543 222 569999999987 5 79999999999988744
Q ss_pred -----HHHH-cCCCC------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccc-----cCCeEEEEeeCCCC
Q 017815 280 -----MSYR-LGWID------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKV-----ADGLLRLILLKGPL 341 (365)
Q Consensus 280 -----l~~~-~g~~~------~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~-----~~~~~~~~l~~~~~ 341 (365)
++.+ +|... ++.++++.++++++|+|++++++ ++.+++.+......+. |+.......|
T Consensus 315 ~~~~~la~~~~g~~~~~~~~~~~~~~~i~~l~~~lglP~~l~elgi~~~~i~~~a~~a~~~~~~~~rp~~~~~~np---- 390 (407)
T 1vlj_A 315 AQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRI---- 390 (407)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSS----
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhhhhhcccccccccCCC----
Confidence 4443 45432 45689999999999999999987 8888776544433321 2111000012
Q ss_pred cceEEccCCCHHHHHHHHHHH
Q 017815 342 GNCVFTGDYDRKALDDTLYAF 362 (365)
Q Consensus 342 g~~~~~~~~~~~~l~~~~~~~ 362 (365)
..++++++.+.+++-
T Consensus 391 ------~~~t~e~i~~i~~~~ 405 (407)
T 1vlj_A 391 ------MVLEREDVREILKLA 405 (407)
T ss_dssp ------SCCCHHHHHHHHHHT
T ss_pred ------CCCCHHHHHHHHHHH
Confidence 267889999888753
No 13
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=100.00 E-value=3.3e-46 Score=365.41 Aligned_cols=326 Identities=15% Similarity=0.159 Sum_probs=245.6
Q ss_pred ecccccccccceeeecccchh----hhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHH
Q 017815 7 LYKDRFFGNSDTLLLISNNCL----YYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMD 81 (365)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~ 81 (365)
|.++.|+.|++++||.+.-+. +++++ .+|++||||+++.+. +.+++.+.|+++| +++ .+|++++++|+.+
T Consensus 1 M~~f~f~~p~~i~~G~g~~~~l~~~~~~~g-~~~~liVtd~~~~~~g~~~~v~~~L~~~g--i~~--~~~~~v~~~p~~~ 75 (383)
T 3ox4_A 1 MASSTFYIPFVNEMGEGSLEKAIKDLNGSG-FKNALIVSDAFMNKSGVVKQVADLLKAQG--INS--AVYDGVMPNPTVT 75 (383)
T ss_dssp -CCEEEECCSEEEESTTHHHHHHHTTTTSC-CCEEEEEEEHHHHHTTHHHHHHHHHHTTT--CEE--EEEEEECSSCBHH
T ss_pred CCCceecCCCeEEECCCHHHHHHHHHHHcC-CCEEEEEECCchhhCchHHHHHHHHHHcC--CeE--EEECCccCCCCHH
Confidence 457789999999999997444 44442 589999999998877 8999999999988 665 4578899999999
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----------------hcCCcEEEeccccccccccccCCce
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKT 145 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----------------~~g~p~i~IPTTl~A~~~s~~~~~~ 145 (365)
+++++++.+++.++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.+
T Consensus 76 ~v~~~~~~~~~~~~D---~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT--agtgSe~t~~a 150 (383)
T 3ox4_A 76 AVLEGLKILKDNNSD---FVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTT--AGTASEMTRFC 150 (383)
T ss_dssp HHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECS--SSCCTTTCSEE
T ss_pred HHHHHHHHHHhcCcC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCC--CCchhhcCCeE
Confidence 999999999999999 999999999999999999887 569999999999 68999999999
Q ss_pred EEecCC--Ccceee-ccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHH
Q 017815 146 GINHRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAI 221 (365)
Q Consensus 146 ~i~~~~--~k~~~~-~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i 221 (365)
+++.+. .|+.+. .++.|+++|+||+++.++|++++++|++|+|+|++ |.|++...+..++.++.. .+.+.+.+
T Consensus 151 vi~~~~~~~K~~i~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~~~td~~a~~ai~~i~~~l 227 (383)
T 3ox4_A 151 IITDEVRHVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAF---EAYSSTAATPITDACALKAASMIAKNL 227 (383)
T ss_dssp EEEETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHH---HHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCeEEeecCCCccceEEEECcHHhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 998764 366554 67899999999999999999999999999999999 777753222223333222 12334455
Q ss_pred HHHHHhhHhh-----hhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HH
Q 017815 222 KRSCENKAEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MS 281 (365)
Q Consensus 222 ~~~~~~~~~~-----v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~ 281 (365)
.+++++..+. +......+|+.. .++..|.++|+|+.. | +++||+++|+.+|..++ ++
T Consensus 228 ~~a~~~~~d~~ar~~m~~as~laG~a~~~~g~g~~Hai~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~la 304 (383)
T 3ox4_A 228 KTACDNGKDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGY--Y-NLPHGVCNAVLLPHVLAYNASVVAGRLKDVG 304 (383)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--S-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchhHHHhhhHHhcC--c-CCChHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555432211 111234455542 356679999999876 5 79999999999988765 34
Q ss_pred HHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCC
Q 017815 282 YRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYD 351 (365)
Q Consensus 282 ~~~g~~----~-----~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~ 351 (365)
+.+|.- + ++.++++.+|++++|+|+++.++ ++++++.+.....-+ .... ...| ..++
T Consensus 305 ~~~g~~~~~~~~~~~a~~~i~~~~~l~~~lglP~~L~~~gi~~~~i~~ia~~a~~--~~~~-~~np----------~~~t 371 (383)
T 3ox4_A 305 VAMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLTELGAKKEDVPLLADHALK--DACA-LTNP----------RQGD 371 (383)
T ss_dssp HHTTCSCTTSCHHHHHHHHHHHHHHHHHHTTCCSSSTTTTCCGGGHHHHHHHHTT--SGGG-GGCS----------SCCC
T ss_pred HHhCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--cccc-cCCC----------CCCC
Confidence 455532 1 23578999999999999999998 888887544333221 1110 0011 2678
Q ss_pred HHHHHHHHHH
Q 017815 352 RKALDDTLYA 361 (365)
Q Consensus 352 ~~~l~~~~~~ 361 (365)
.+++.+.+++
T Consensus 372 ~~di~~i~~~ 381 (383)
T 3ox4_A 372 QKEVEELFLS 381 (383)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8899888864
No 14
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=100.00 E-value=4.6e-46 Score=367.50 Aligned_cols=329 Identities=17% Similarity=0.180 Sum_probs=238.0
Q ss_pred ccceecccccccccceeeecccchhhhhcc-CCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCC
Q 017815 3 PKALLYKDRFFGNSDTLLLISNNCLYYRHV-QGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKN 79 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~ 79 (365)
|+.+|.++.|+.|++++||.+.-+.+.++. .++|++||||+++.+. +.+++.+.|+ | +++ .+|++++++|+
T Consensus 18 ~~~~m~~~~~~~p~~i~~G~g~l~~l~~~l~~g~r~liVtd~~~~~~~g~~~~v~~~L~--g--~~~--~~f~~v~~~p~ 91 (408)
T 1oj7_A 18 KKAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALK--G--MDV--LEFGGIEPNPA 91 (408)
T ss_dssp -CBCCCCEEEEEEEEEEESTTGGGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTT--T--SEE--EEECCCCSSCB
T ss_pred hhhhhhceeecCCCeEEECCCHHHHHHHHHhcCCEEEEEECCchhhhccHHHHHHHHhC--C--CEE--EEeCCcCCCcC
Confidence 677888889999999999999855554432 1589999999886555 8999999997 6 654 57899999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh-------------------cCCcEEEeccccccccccc
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-------------------RGVSFIQIPTTVMAQVDSS 140 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~-------------------~g~p~i~IPTTl~A~~~s~ 140 (365)
+++++++++.++++++| +||||||||++|+||++|+.+. +++|+|+|||| ++|||+
T Consensus 92 ~~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTT--agtgSe 166 (408)
T 1oj7_A 92 YETLMNAVKLVREQKVT---FLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTL--PATGSE 166 (408)
T ss_dssp HHHHHHHHHHHHHHTCC---EEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESS--CSSCGG
T ss_pred HHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCC--CchhHH
Confidence 99999999999999998 9999999999999999998764 78999999999 689999
Q ss_pred cCCceEEecCCC--cceeec-cCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHH-HHHhhhhhhcCC-HH
Q 017815 141 VGGKTGINHRLG--KNLIGA-FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEW-QEQNMHKLMARD-PR 215 (365)
Q Consensus 141 ~~~~~~i~~~~~--k~~~~~-~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~-~~~~~~~~~~~~-~~ 215 (365)
++++++++.+.+ |+.+.. ++.|++||+||+++.|+|++++++|++|+|+|++ +.|++. ..+..++.++.. .+
T Consensus 167 vt~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~hai---Ea~~s~~~~~~~~d~~a~~ai~ 243 (408)
T 1oj7_A 167 SNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTV---EQYVTKPVDAKIHDRFAEGILL 243 (408)
T ss_dssp GSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHH---HHHSSSCBCCHHHHHHHHHHHH
T ss_pred hCCCEEEEECCCCeEEEeeCCCcCccEEEECchhhcCCCHHHHHhHHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHHH
Confidence 999999998765 444443 5699999999999999999999999999999999 666542 111122222211 12
Q ss_pred HHHHHHHHHHHhhHhh-----hhcchhhhccccccCc-------chhHHHHhhhccCCCCCCcHHHHHHHHHHHH-----
Q 017815 216 AFAYAIKRSCENKAEV-----VSLDEKESGLRATLNL-------GHTFGHAIETGFGYGQWLHGEAVAAGMVMAV----- 278 (365)
Q Consensus 216 ~l~~~i~~~~~~~~~~-----v~~d~~~~g~r~~l~~-------gH~~~Hale~~~~~~~~~HG~~vaig~~~~~----- 278 (365)
.+.+.+.+++.+..+. +......+|+. ++|+ +|+++|+++.. + +++||++||++|+..+
T Consensus 244 ~i~~~l~~av~d~~d~~ar~~~~~as~lag~a-~~~~G~~~~~~~Hai~h~l~~~--~-~i~HG~avai~lp~v~~~~~~ 319 (408)
T 1oj7_A 244 TLIEDGPKALKEPENYDVRANVMWAATQALNG-LIGAGVPQDWATHMLGHELTAM--H-GLDHAQTLAIVLPALWNEKRD 319 (408)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSSS-TTTTTSCCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-HhccCCCCCCchhhhhhHHHhc--c-CCChHHhHHHHHHHHHHHHhh
Confidence 2233333333322111 11112334443 4444 46677777654 5 7999999999998753
Q ss_pred -------HHHHH-cCCC-------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCc
Q 017815 279 -------DMSYR-LGWI-------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLG 342 (365)
Q Consensus 279 -------~l~~~-~g~~-------~~~~~~~i~~ll~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g 342 (365)
+++++ +|.. .++.+++++++++++|+|+++++. ++++++.+......+ .++.....|
T Consensus 320 ~~~~~~~~la~~~~g~~~~~~~~~~~~~~~~i~~l~~~lglP~~l~~lgi~~~~i~~~a~~a~~--~~~~~~~~p----- 392 (408)
T 1oj7_A 320 TKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEE--HGMTQLGEN----- 392 (408)
T ss_dssp TTHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHH--TTCSSBTTT-----
T ss_pred hCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--ccccccCCC-----
Confidence 45554 3654 245789999999999999999887 887776544333222 111000012
Q ss_pred ceEEccCCCHHHHHHHHHH
Q 017815 343 NCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~ 361 (365)
..++++++.+.+++
T Consensus 393 -----~~~t~~~i~~il~~ 406 (408)
T 1oj7_A 393 -----HDITLDVSRRIYEA 406 (408)
T ss_dssp -----TCBCHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHH
Confidence 26778888888865
No 15
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=100.00 E-value=4.8e-46 Score=362.97 Aligned_cols=320 Identities=17% Similarity=0.162 Sum_probs=235.6
Q ss_pred ccccccccceeeecccchhhhhcc--CCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHH
Q 017815 9 KDRFFGNSDTLLLISNNCLYYRHV--QGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLM 84 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~ 84 (365)
.|.|+.|++++||.+.-+.+.++. .++|++||||+++.+. +.+++.+.|+++| +++ .+|++++++|++++++
T Consensus 13 ~~~~~~p~~i~~G~g~~~~l~~~l~~~g~~~liVtd~~~~~~~g~~~~v~~~L~~~g--~~~--~~~~~~~~~p~~~~v~ 88 (371)
T 1o2d_A 13 VWEFYMPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETE--ISY--EIFDEVEENPSFDNVM 88 (371)
T ss_dssp CCCCCCCCEEEESTTHHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTT--CEE--EEEEEECSSCBHHHHH
T ss_pred eEEecCCceEEECcCHHHHHHHHHHHcCCEEEEEECchHHhhccHHHHHHHHHHHcC--CeE--EEeCCccCCCCHHHHH
Confidence 689999999999999744443321 1589999999987776 8899999999988 654 5678899999999999
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh----------------cCCcEEEeccccccccccccCCceEEe
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGIN 148 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~----------------~g~p~i~IPTTl~A~~~s~~~~~~~i~ 148 (365)
++++.++++++| +||||||||++|+||++|+.+. +++|+|+|||| |+|||++++.+++.
T Consensus 89 ~~~~~~~~~~~d---~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT--agtgse~t~~avi~ 163 (371)
T 1o2d_A 89 KAVERYRNDSFD---FVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT--AGTGSEVTPYSILT 163 (371)
T ss_dssp HHHHHHTTSCCS---EEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS--SCCCGGGCCEEEEE
T ss_pred HHHHHHHhcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC--CchhhhhcCceEEE
Confidence 999999998888 9999999999999999999876 79999999999 79999999999998
Q ss_pred -cCCCcceeeccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHHHHh
Q 017815 149 -HRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCEN 227 (365)
Q Consensus 149 -~~~~k~~~~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 227 (365)
..+.|..+. ++.|++||+||+++.|+|++++++|++|+++|++ +.|++...+..++.++. ...+++.+++..
T Consensus 164 ~~~g~K~~i~-~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---E~~~s~~~~~~~d~~a~---~a~~li~~~l~~ 236 (371)
T 1o2d_A 164 DPEGNKRGCT-LMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAV---EGYLSRKSTPPSDALAI---EAMKIIHRNLPK 236 (371)
T ss_dssp CTTSCEEEEE-CCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHHHH---HHHHHHHHHHHH
T ss_pred cCCCeeEeee-cccCCEEEECchhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHH---HHHHHHHHHHHH
Confidence 224466666 8899999999999999999999999999999999 66765433323333221 122344444432
Q ss_pred hH-------hhhhcchhhhccccccCcchhHHHHhhhccC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHH-----HH
Q 017815 228 KA-------EVVSLDEKESGLRATLNLGHTFGHAIETGFG-YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIV-----KR 294 (365)
Q Consensus 228 ~~-------~~v~~d~~~~g~r~~l~~gH~~~Hale~~~~-~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~-----~~ 294 (365)
-. +.+......+|+. ++++||+++|+|++.++ +.+++||++||++|+..++++...+......+ ++
T Consensus 237 ~v~~d~~aR~~~~~as~laG~a-~~n~G~~~~Hai~h~l~~~~~i~HG~a~ai~l~~~~~~~~~~~~~~~~~~a~~l~~~ 315 (371)
T 1o2d_A 237 AIEGNREARKKMFVASCLAGMV-IAQTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGS 315 (371)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTTC
T ss_pred HHHcCHHHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Confidence 10 0111113345553 56788888888885542 22799999999999999988765431111223 45
Q ss_pred HHHHHHHcCCCCCCCCCCCHHHHH---HHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHHHh
Q 017815 295 VHNILQQAKLPTAPPDTMTVEMFK---SIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 363 (365)
Q Consensus 295 i~~ll~~lglp~~~~~~i~~~~~~---~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~~ 363 (365)
+.++++++|+|.++. ++.+++. +.+..|++..+ .| ..++++++.+.+++..
T Consensus 316 l~~~l~~lglp~~~g--i~~~~~~~la~~a~~d~~~~~------~p----------~~~~~~~i~~il~~~~ 369 (371)
T 1o2d_A 316 LLKFLKELGLYEKVA--VSSEELEKWVEKGSRAKHLKN------TP----------GTFTPEKIRNIYREAL 369 (371)
T ss_dssp HHHHHHHTTCCCCCC--CCHHHHHHHHHHHTTCGGGGG------SS----------SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCC--CCHHHHHHHHHHHHhcccccC------CC----------CCCCHHHHHHHHHHHh
Confidence 689999999997643 5665554 33334443211 12 2677889988887643
No 16
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=100.00 E-value=4.8e-45 Score=353.56 Aligned_cols=318 Identities=18% Similarity=0.163 Sum_probs=238.1
Q ss_pred ecccccc-cccceeeecccc----hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHH
Q 017815 7 LYKDRFF-GNSDTLLLISNN----CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMD 81 (365)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~----~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~ 81 (365)
|.++.|| +|++++||.+.- +++++++ .+|++||||+++.. +.+++.+.|++.+ +.+|++++++|+.+
T Consensus 5 M~~f~~~~~p~~i~~G~g~~~~l~~~l~~~g-~~r~liVtd~~~~~-~~~~v~~~L~~~~------~~~f~~v~~~p~~~ 76 (358)
T 3jzd_A 5 SQPFIYEAHAARVVFGAGSSSQVAAEVERLG-AKRALVLCTPNQQA-EAERIADLLGPLS------AGVYAGAVMHVPIE 76 (358)
T ss_dssp CCCEEEEECCEEEEESTTGGGGHHHHHHHTT-CSCEEEECCGGGHH-HHHHHHHHHGGGE------EEEECCCCTTCBHH
T ss_pred ccCceeecCCceEEECCCHHHHHHHHHHHhC-CCeEEEEeCCcHHH-HHHHHHHHhccCC------EEEecCCcCCCCHH
Confidence 7788898 999999999974 4445553 58999999999765 5899999998754 24578999999999
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCccee-eccC
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-GAFY 160 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~-~~~~ 160 (365)
+++++++.+++.++| +||||||||++|+||++|. .+++|+|+|||| + +||++++.++++..+.|+.+ +.++
T Consensus 77 ~v~~~~~~~~~~~~D---~IIavGGGsviD~aK~iA~--~~~~p~i~IPTT--~-tgSevt~~~v~~~~~~K~~~~~~~~ 148 (358)
T 3jzd_A 77 SARDATARAREAGAD---CAVAVGGGSTTGLGKAIAL--ETGMPIVAIPTT--Y-AGSEVTPVYGLTEAGTKRTGRDPRV 148 (358)
T ss_dssp HHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHH--HHCCCEEEEECS--S-CCGGGCSEEEEEETTEEEEEECGGG
T ss_pred HHHHHHHHhhccCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEeCC--c-cccccccceEEcCCCeeEeeccCCc
Confidence 999999999999999 9999999999999999965 689999999999 3 68999987666644457765 5678
Q ss_pred CccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhHhhhh-----c
Q 017815 161 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKAEVVS-----L 234 (365)
Q Consensus 161 ~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~v~-----~ 234 (365)
.|+++|+||+++.++|++++++|++|+|+|++ |.|++...+..++.++.. .+.+.+.+.+++.+..+..+ .
T Consensus 149 ~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~ 225 (358)
T 3jzd_A 149 LPRTVIYDPALTVGLPRGLSVTSALNAIAHAA---EGLYARDANPVMSLMAEEGIRALAAGIPAVFNDPADLDARSQCLY 225 (358)
T ss_dssp SCSEEEECGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999 776653222223332221 12334455555544322111 1
Q ss_pred chhhhccc---cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHH------------HHHHcCCCCHHHHHHHHHHH
Q 017815 235 DEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWIDDSIVKRVHNIL 299 (365)
Q Consensus 235 d~~~~g~r---~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~------------l~~~~g~~~~~~~~~i~~ll 299 (365)
....+|+. ..++..|.++|+|+.. | +++||+++|+.+|..++ +++.+|.-+.+..+++++|+
T Consensus 226 as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~~lg~~~~~~~~~i~~l~ 302 (358)
T 3jzd_A 226 GAWLCGTVLGGVGMALHHKLCHTLGGS--F-NLPHAETHTIVLPHALAYNAAAVPEAMARIRRATGAGEQSAAATLFDLA 302 (358)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHhhcc--c-CCchhHhHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 23445554 2356679999999887 5 79999999999988765 44455543223678999999
Q ss_pred HHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 300 QQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 300 ~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
+++|+|+++.+. ++++++.+.....-+. . ...| ..++.+++.+.+++
T Consensus 303 ~~lglP~~L~e~Gi~~~~i~~~a~~a~~~---~--~~np----------~~~~~~di~~i~~~ 350 (358)
T 3jzd_A 303 QRHGAPVALRDIGMREEDLDRAADIALAS---P--YWNP----------RPIEREPIRALLQA 350 (358)
T ss_dssp HHTTCCCCGGGGTCCGGGHHHHHHHHTTS---C--CCCS----------SCCCHHHHHHHHHH
T ss_pred HHcCCCCCHHHcCCCHHHHHHHHHHHHhc---c--cCCC----------CCCCHHHHHHHHHH
Confidence 999999999988 8888875443332211 1 0112 26788899888865
No 17
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.9e-44 Score=348.96 Aligned_cols=315 Identities=14% Similarity=0.126 Sum_probs=234.8
Q ss_pred ecccccc-cccceeeeccc----chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHH
Q 017815 7 LYKDRFF-GNSDTLLLISN----NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMD 81 (365)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~----~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~ 81 (365)
|.++.|| +|++++||.+. ++++++++ .+|++||||++... +.+++.+.|++.+ + .+|++++++|+.+
T Consensus 3 M~~F~~~~~p~~i~~G~g~~~~l~~~l~~~g-~~r~liVtd~~~~~-~~~~v~~~L~~~~----~--~v~~~v~~~p~~~ 74 (353)
T 3hl0_A 3 MQPFVYMAAPARIVFSAGSSADVAEEIRRLG-LSRALVLSTPQQKG-DAEALASRLGRLA----A--GVFSEAAMHTPVE 74 (353)
T ss_dssp CCCCCCCCCCCCEEECTTGGGGHHHHHHHTT-CCCEEEECCGGGHH-HHHHHHHHHGGGE----E--EEECCCCTTCBHH
T ss_pred ccceeeecCCceEEECcCHHHHHHHHHHHhC-CCEEEEEecCchhh-HHHHHHHHHhhCC----c--EEecCcCCCCcHH
Confidence 5678887 99999999997 44455553 58999999998754 6899999998754 2 3578899999999
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcce-eeccC
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNL-IGAFY 160 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~-~~~~~ 160 (365)
+++++++.+++.++| +||||||||++|+||++|. .+++|+|+|||| + +||++++.++++..+.|+. .+.++
T Consensus 75 ~v~~~~~~~~~~~~D---~IIavGGGs~iD~aK~iA~--~~~~p~i~IPTT--a-tgSe~t~~~v~~~~~~K~~~~~~~~ 146 (353)
T 3hl0_A 75 VTKTAVEAYRAAGAD---CVVSLGGGSTTGLGKAIAL--RTDAAQIVIPTT--Y-AGSEVTPILGQTENGVKTTMRGPEI 146 (353)
T ss_dssp HHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHH--HHCCEEEEEECS--S-CCGGGCCEEEEEETTEEEEEECTTT
T ss_pred HHHHHHHHHhccCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEeCC--c-hhhhccCceEEcCCCeeEeeecCCc
Confidence 999999999999998 9999999999999999965 689999999999 4 6999998777664444654 45678
Q ss_pred CccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhHhh-----hhc
Q 017815 161 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKAEV-----VSL 234 (365)
Q Consensus 161 ~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~-----v~~ 234 (365)
.|+++|+||+++.|+|++++++|++|+++|++ |.|++...+..++.++.. .+.+.+.+.+++++..+. +..
T Consensus 147 ~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~ 223 (353)
T 3hl0_A 147 LPEVVIYDAELTLGLPVAISMTSGLNAMAHAA---EALYARDRNPIASMMAVEGLRAMIEALPVVRQAPHDIGARETALY 223 (353)
T ss_dssp SCSEEEECGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CccEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999 776653222223332221 123344555555432221 111
Q ss_pred chhhhccc---cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHH------------cCCCCHHHHHHHHHHH
Q 017815 235 DEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYR------------LGWIDDSIVKRVHNIL 299 (365)
Q Consensus 235 d~~~~g~r---~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~------------~g~~~~~~~~~i~~ll 299 (365)
....+|+. ..++..|.++|+|... | +++||+++|+.++..+++... +|. + .++++++|+
T Consensus 224 as~laG~a~~~~g~g~~H~i~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~-~--~~~~i~~l~ 297 (353)
T 3hl0_A 224 GAWLCGTVLGAVGMSLHHKLCHTLGGS--L-DLPHAETHAVLLPHTIAYVEEAAPNLLAPLAALVGG-R--AGAGLFDFA 297 (353)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHTS-C--HHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHhhHhhhc--c-CCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCc-H--HHHHHHHHH
Confidence 23455553 2356679999999987 5 799999999999988765432 221 1 578999999
Q ss_pred HHcCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 300 QQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 300 ~~lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
+++|+|+++.+. ++++++.+.....-+. . ...| ..++.+++.+.+++
T Consensus 298 ~~lglP~~L~e~Gi~~~~i~~~a~~a~~~---~--~~np----------~~~~~~di~~i~~~ 345 (353)
T 3hl0_A 298 ARLGAPSSLAALGVGADDLDPMAELATAN---P--YWCP----------RPIEKTAIRDLLQR 345 (353)
T ss_dssp HHHTCCCCTGGGTCCGGGHHHHHHHHTTS---C--CCCS----------SCCCHHHHHHHHHH
T ss_pred HHcCCCccHHhcCCCHHHHHHHHHHHHhc---c--cCCC----------CCCCHHHHHHHHHH
Confidence 999999999988 8888875444333221 1 0112 26788888888865
No 18
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.5e-43 Score=344.64 Aligned_cols=319 Identities=17% Similarity=0.194 Sum_probs=226.6
Q ss_pred ccccccccceeeeccc----chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHH
Q 017815 9 KDRFFGNSDTLLLISN----NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLM 84 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~ 84 (365)
.+.|+.|++++||.+. +++++++ ++|++||||+++.+.+.+++.+.|++ | +++ .+ ...+++|+.++++
T Consensus 25 ~~~f~~p~~i~~G~g~l~~l~~~l~~~--g~r~liVtd~~~~~~~~~~v~~~L~~-g--~~~-~~--~~~~~~p~~~~v~ 96 (387)
T 3uhj_A 25 ARAFGGPNKYIQRAGEIDKLAAYLAPL--GKRALVLIDRVLFDALSERIGKSCGD-S--LDI-RF--ERFGGECCTSEIE 96 (387)
T ss_dssp EEEEECCSEEEECTTTTTTTHHHHGGG--CSEEEEEECTTTHHHHHHHC-------C--CEE-EE--EECCSSCSHHHHH
T ss_pred hhHhcCCCeEEEcCCHHHHHHHHHHHc--CCEEEEEECchHHHHHHHHHHHHHHc-C--CCe-EE--EEcCCCCCHHHHH
Confidence 5789999999999987 4445555 48999999999999899999999998 8 765 33 3445677999999
Q ss_pred HHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeec--cCCc
Q 017815 85 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA--FYQP 162 (365)
Q Consensus 85 ~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~--~~~P 162 (365)
++++.+++.++| +||||||||++|+||++| +.+++|+|+|||| |+|||+++++++|+.+.+|+..+. .+.|
T Consensus 97 ~~~~~~~~~~~d---~IIavGGGs~~D~AK~iA--~~~~~p~i~IPTT--agtgSevt~~avi~~~~~~~k~~~~~~~~P 169 (387)
T 3uhj_A 97 RVRKVAIEHGSD---ILVGVGGGKTADTAKIVA--IDTGARIVIAPTI--ASTDAPCSAIAVRYTEHGVYEEALRLPRNP 169 (387)
T ss_dssp HHHHHHHHHTCS---EEEEESSHHHHHHHHHHH--HHTTCEEEECCSS--CCCSTTTSSEEEEECTTSCEEEEEECSCCC
T ss_pred HHHHHHhhcCCC---EEEEeCCcHHHHHHHHHH--HhcCCCEEEecCc--ccCCcccCCeEEEEcCCCceEeeeecCCCC
Confidence 999999999998 999999999999999996 6789999999999 899999999999998877665433 3689
Q ss_pred cEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhh-----hcCCHHHHH----HHHHH-------HHH
Q 017815 163 QCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKL-----MARDPRAFA----YAIKR-------SCE 226 (365)
Q Consensus 163 ~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~-----~~~~~~~l~----~~i~~-------~~~ 226 (365)
++||+||+++.++|++++++|++|+|+|++ |.|++...+..+.. .......+. +.+.+ +++
T Consensus 170 ~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~a~~~~~~~~~~~~~~~a~~~a~~~~~~l~~~l~~a~~a~~ 246 (387)
T 3uhj_A 170 DAVVVDSALVAAAPARFLVAGIGDALSTWF---EARSNIESRTDNYVAGGFPATEAGMAIARHCQDVLTRDAVKAKIAVE 246 (387)
T ss_dssp SEEEECHHHHHTSCHHHHHHHHHHHHHHHH---HHHHHHHHTCCCSSTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCHHHHHHHHHHHHHHHH---HHHHHHhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 88776544322111 000001111 22221 222
Q ss_pred hh------Hhhhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 017815 227 NK------AEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHN 297 (365)
Q Consensus 227 ~~------~~~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ 297 (365)
+. .+++......+|+.. .++..|.++|+|+...+..+++||++||++.+..+.+. ...++.++++.+
T Consensus 247 ~~~~~~Ar~~m~~as~~laG~af~~ag~g~~Hai~h~L~~~~~~~~i~HG~~~a~~~la~~~~~----~~~~~~i~~i~~ 322 (387)
T 3uhj_A 247 AGLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEEVHGYFHGEKVAFGTLCLLMLE----NRDRAEIEAMIR 322 (387)
T ss_dssp TTCCCHHHHHHHHHHTHHHHHHHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHT----TCCHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhhhhhccCcHHHHHhhhhhhcccCcCCCCchHHHHHHHHHHHHhC----CCcHHHHHHHHH
Confidence 11 111111124556542 35667889998886532237999999999887766543 124678999999
Q ss_pred HHHHcCCCCCCCCC-CC---HHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 298 ILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 298 ll~~lglp~~~~~~-i~---~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
|++++|+|+++.++ ++ ++++.+.....-+ .+..+. ..| ..++.|++.+++++
T Consensus 323 l~~~lglP~~L~elGi~~~~~~~l~~ia~~a~~-~~~~~~-n~P----------~~~t~e~i~~il~~ 378 (387)
T 3uhj_A 323 FCRSVGLPTKLADLGIVDDVPAKIGRVAEAACR-PGNIIY-ATP----------VTITVPAVRDAILA 378 (387)
T ss_dssp HHHHHTCCCSGGGGTCCSSHHHHHHHHHHHHTS-TTCGGG-GSS----------SCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHcCCCCCcHHHHHHHHHHHHc-ccchhh-cCC----------CCCCHHHHHHHHHH
Confidence 99999999999987 87 6776443332221 111000 012 26678888877754
No 19
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=100.00 E-value=2.2e-44 Score=352.02 Aligned_cols=315 Identities=20% Similarity=0.201 Sum_probs=228.2
Q ss_pred ccccccccceeeecccchh----hhhccCCceEEEEEccCchHHH-HHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH
Q 017815 9 KDRFFGNSDTLLLISNNCL----YYRHVQGKKVLVVTNNTVAPLY-LDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 83 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~livtd~~~~~~~-~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v 83 (365)
++.|+.|++++||.+.-+. ++++ ++|++||||+++.+.. .+++.+.|++.| +. +.++++|+ +.+++
T Consensus 14 ~f~~~~p~~i~~G~g~l~~l~~~l~~~--g~~~liVtd~~~~~~~~~~~v~~~L~~~g--~~---~~~~~ge~--~~~~v 84 (376)
T 1kq3_A 14 ITTTIFPGRYVQGAGAINILEEELSRF--GERAFVVIDDFVDKNVLGENFFSSFTKVR--VN---KQIFGGEC--SDEEI 84 (376)
T ss_dssp CBCCCCCSEEEEETTGGGGHHHHHHTT--CSEEEEEECHHHHHHTTCTTGGGGCSSSE--EE---EEECCSSC--BHHHH
T ss_pred CcccCCCceEEECCCHHHHHHHHHHHc--CCeEEEEECccHHhhccHHHHHHHHHHcC--Ce---EEEeCCCC--CHHHH
Confidence 5788999999999997444 4444 4899999999988875 889998888776 43 23445654 77899
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeecc--CC
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF--YQ 161 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~--~~ 161 (365)
+++++.+++ ++| +||||||||++|+||++| +++++|+|+|||| |+|||++|++++++.+.+++..+.+ +.
T Consensus 85 ~~~~~~~~~-~~d---~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTT--a~tgSevt~~avi~~~~~~~k~~~~~~~~ 156 (376)
T 1kq3_A 85 ERLSGLVEE-ETD---VVVGIGGGKTLDTAKAVA--YKLKKPVVIVPTI--ASTDAPCSALSVIYTPNGEFKRYLFLPRN 156 (376)
T ss_dssp HHHHTTCCT-TCC---EEEEEESHHHHHHHHHHH--HHTTCCEEEEESS--CCCSCTTSSEEEEECTTSCEEEEEECSSC
T ss_pred HHHHHHHhc-CCC---EEEEeCCcHHHHHHHHHH--HhcCCCEEEecCc--cccCcccCCeEEEEeCCCCeEeeccCCCC
Confidence 999998887 666 999999999999999996 6799999999999 8999999999999988777766555 68
Q ss_pred ccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcC--C--HHHHH----HHH----HHHHHh-h
Q 017815 162 PQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR--D--PRAFA----YAI----KRSCEN-K 228 (365)
Q Consensus 162 P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~--~--~~~l~----~~i----~~~~~~-~ 228 (365)
|++||+||+++.|+|++++++|++|+|+|++ |.|++...+..+ +... . .+.+. +.+ .+++.. +
T Consensus 157 P~~viiDp~l~~tlP~~~~aag~~Dal~h~~---E~~~s~~~~~~~-~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~ 232 (376)
T 1kq3_A 157 PDVVLVDTEIVAKAPARFLVAGMGDALATWF---EAESCKQKYAPN-MTGRLGSMTAYALARLCYETLLEYGVLAKRSVE 232 (376)
T ss_dssp CSEEEEEHHHHHHSCHHHHHHHHHHHHHHHH---HHHHHHHHTCBC-TTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEchHHHhhCCHHHHHHHHHHHHHHHH---HHHHhhhcCCcc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 777664432111 1000 0 11111 111 111101 1
Q ss_pred Hhhhhcc--------hhhhccccccCcchhHHHHhhhccC----CCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 017815 229 AEVVSLD--------EKESGLRATLNLGHTFGHAIETGFG----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVH 296 (365)
Q Consensus 229 ~~~v~~d--------~~~~g~r~~l~~gH~~~Hale~~~~----~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~ 296 (365)
.....++ ...+|+ .++|+||+++|+|++.++ +.+++||++||+|++..+.++ ..+++.++++.
T Consensus 233 ~~~~~~ar~~~~~a~~~~aG~-a~~n~g~~~~Hai~~~l~~~~~~~~i~HG~ava~g~~~~~~~~----~~~~~~~~~i~ 307 (376)
T 1kq3_A 233 EKSVTPALEKIVEANTLLSGL-GFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLT----DKPRKMIEEVY 307 (376)
T ss_dssp TTCCCHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHT----TCCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHH-HHhccchHHHHHHhChhhcccccCCCCcHHHHHHHHHHHHHhc----cCCHHHHHHHH
Confidence 1111111 136787 577888888888888743 137999999999999887663 23577899999
Q ss_pred HHHHHcCCCCCCCCC-CC---HHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 297 NILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 297 ~ll~~lglp~~~~~~-i~---~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
++++++|+|++++++ ++ .+++.+...... .....+. ..| ..++++++.+.+++
T Consensus 308 ~l~~~~glP~~l~~lgi~~~~~~~~~~~a~~a~-~~~~~~~-n~p----------~~~t~~~i~~il~~ 364 (376)
T 1kq3_A 308 SFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKAC-DKNETIH-NEP----------QPVTSKDVFFALKA 364 (376)
T ss_dssp HHHHHHTCCCSGGGGTCTTCCHHHHHHHHHHHT-CTTSGGG-GSS----------SCCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHcCCCCCCHHHHHHHHHHHh-cccchhh-cCC----------CCCCHHHHHHHHHH
Confidence 999999999999876 76 677644333322 2111100 012 26778888887743
No 20
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-44 Score=355.12 Aligned_cols=318 Identities=19% Similarity=0.230 Sum_probs=227.5
Q ss_pred cccccccceeeecccchhh----hhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHH
Q 017815 10 DRFFGNSDTLLLISNNCLY----YRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK 85 (365)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~l----~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~ 85 (365)
+.|+.|++++||.+.-+.+ ++++ .+|++||||+++.+.+.+++.+.|+++| +++.+ ..+++|+ +.+++++
T Consensus 64 ~~f~~p~~i~~G~g~l~~l~~~l~~~g-~~rvlIVtd~~~~~~~~~~v~~~L~~~g--i~~~~-~~~~ge~--~~~~v~~ 137 (450)
T 1ta9_A 64 RIFTSPQKYVQGRHAFTRSYMYVKKWA-TKSAVVLADQNVWNICANKIVDSLSQNG--MTVTK-LVFGGEA--SLVELDK 137 (450)
T ss_dssp EEEECCSEEEEETTGGGGHHHHHTTTC-SSEEEEEEEHHHHHHTHHHHHHHHHHTT--CEEEE-EEECSCC--CHHHHHH
T ss_pred eEEeCCceEEECcCHHHHHHHHHHhcC-CCEEEEEECccHHHHHHHHHHHHHHHCC--CeEEE-EeeCCCC--CHHHHHH
Confidence 5789999999999974444 4442 2499999999998888999999999988 77643 3445654 7799999
Q ss_pred HHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCcceeecc--CCcc
Q 017815 86 VFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF--YQPQ 163 (365)
Q Consensus 86 ~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~--~~P~ 163 (365)
+++.+++ ++| +||||||||++|+||++| +++++|+|+|||| |+|||++|++++|+.+.+++..+.+ +.|+
T Consensus 138 ~~~~~~~-~~D---~IIAvGGGSviD~AK~iA--~~~giP~I~IPTT--AgtgSevt~~avI~~~~~~~k~~~~~~~~P~ 209 (450)
T 1ta9_A 138 LRKQCPD-DTQ---VIIGVGGGKTMDSAKYIA--HSMNLPSIICPTT--ASSDAATSSLSVIYTPDGQFQKYSFYPLNPN 209 (450)
T ss_dssp HHTTSCT-TCC---EEEEEESHHHHHHHHHHH--HHTTCCEEEEESS--CSCSCTTCSEEEEC----CCCEEEECSSCCS
T ss_pred HHHHHhh-CCC---EEEEeCCcHHHHHHHHHH--HhcCCCEEEEeCC--CccCcccCCceEEEeCCCceEEecccccCCc
Confidence 9999887 666 999999999999999996 6799999999999 8999999999999987776655554 5899
Q ss_pred EEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcC--C--HHHHH--------HHHHHHHH-hhHh
Q 017815 164 CVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR--D--PRAFA--------YAIKRSCE-NKAE 230 (365)
Q Consensus 164 ~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~--~--~~~l~--------~~i~~~~~-~~~~ 230 (365)
+||+||+++.|+|++++++|++|+|+|++ |.|++...+.. .+.+. . .+.+. +.+.+++. .+..
T Consensus 210 ~viiDp~ll~tlP~~~~aag~~DaL~h~~---E~~~s~~a~~~-~l~~~~~~~~a~~~a~~~~~~l~~~l~~a~~~~k~~ 285 (450)
T 1ta9_A 210 LIFIDTDVIVRAPVRFLISGIGDALSTWV---ETESVIRSNST-SFAGGVASIAGRYIARACKDTLEKYALSAILSNTRG 285 (450)
T ss_dssp EEEEEHHHHHHSCHHHHHHHHHHHHHHHH---HHHHHHHTTCC-CTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEchHHHccCCHHHHHHHHHHHHHHHH---HHHhcccCCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998 77665432111 11000 0 11111 11111111 1111
Q ss_pred hhhcc-------h-hhhccccccCcchhHHHHhhhccC-----CCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 017815 231 VVSLD-------E-KESGLRATLNLGHTFGHAIETGFG-----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHN 297 (365)
Q Consensus 231 ~v~~d-------~-~~~g~r~~l~~gH~~~Hale~~~~-----~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~~ 297 (365)
...++ . ..+|+ .++|+||+++|+|++.++ +.+++||++||+|+++.+.++ ..+++.++++.+
T Consensus 286 ~~~ear~~m~~As~~laG~-a~~n~G~~~~Hai~h~l~~~~~~~~~i~HG~avAig~la~~~l~----~~~~~~i~~i~~ 360 (450)
T 1ta9_A 286 VCTEAFENVVEANTLMSGL-GFENGGLAAAHAIHNGMTAIHGPVHRLMHGEKVAYGTLVQVVLE----DWPLEDFNNLAS 360 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HHHSSCCCHHHHHHHHHGGGCGGGGGSCHHHHHHHHHHHHHHHT----TCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhH-HHhcCCchHHHHHhHHHhccccCcCCCCchHhhHHHHHHHHHhc----cCCHHHHHHHHH
Confidence 11111 1 25788 577899999998888742 236999999999999887663 235778999999
Q ss_pred HHHHcCCCCCCCCC-CC---HHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHHH
Q 017815 298 ILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 362 (365)
Q Consensus 298 ll~~lglp~~~~~~-i~---~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~~ 362 (365)
+++++|+|++++++ ++ .+++.+...... .++. . +|. .-.+++.+++.+.+++.
T Consensus 361 l~~~lglP~~L~elgi~~~~~~~l~~~a~~a~--~~~~-------~-~~~--~p~~~t~edi~~il~~a 417 (450)
T 1ta9_A 361 FMAKCHLPITLEELGIPNVTDEELLMVGRATL--RPDE-------S-IHN--MSKKFNPSQIADAIKAV 417 (450)
T ss_dssp HHHHTTCCCSHHHHTCTTCCHHHHHHHHHHHT--CTTS-------G-GGG--SSSCCCHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHcCCCCCcHHHHHHHHHHHh--hCcc-------c-ccC--CCCCCCHHHHHHHHHHH
Confidence 99999999999865 66 667644333221 1111 1 221 01367888888888653
No 21
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=100.00 E-value=5.7e-43 Score=339.51 Aligned_cols=312 Identities=14% Similarity=0.153 Sum_probs=230.4
Q ss_pred cccc-cccceeeeccc-----chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH
Q 017815 10 DRFF-GNSDTLLLISN-----NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 83 (365)
Q Consensus 10 ~~~~-~~~~~~~~~~~-----~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v 83 (365)
+.|| .|++++||.+. ++++++++ .+|++||||+++.+ +.+++.+.|+. +.+|++++++|+.+++
T Consensus 8 F~~~~~P~~i~~G~g~~~~~l~~~l~~~g-~~rvliVtd~~~~~-~~~~v~~~L~~--------~~~f~~v~~~p~~~~v 77 (364)
T 3iv7_A 8 FNHDTLPQKVMFGYGKSSAFLKQEVERRG-SAKVMVIAGEREMS-IAHKVASEIEV--------AIWHDEVVMHVPIEVA 77 (364)
T ss_dssp EEEEECCEEEEEETTCHHHHHHHHHHHHT-CSSEEEECCGGGHH-HHHHHTTTSCC--------SEEECCCCTTCBHHHH
T ss_pred eEEecCCceEEEeCChHHHHHHHHHHHcC-CCEEEEEECCCHHH-HHHHHHHHcCC--------CEEEcceecCCCHHHH
Confidence 5676 99999999994 45566663 58999999999765 45777666652 2467899999999999
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccccccccccccCCceEEecCCCccee-eccCCc
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-GAFYQP 162 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~-~~~~~P 162 (365)
+++++.++++++| +||||||||++|+||++|. .+++|+|+|||| + +||++++.++++..+.|+.+ +.++.|
T Consensus 78 ~~~~~~~~~~~~D---~IIavGGGs~iD~aK~iA~--~~~~P~i~IPTT--a-tgSe~t~~avi~~~~~K~~~~~~~~~P 149 (364)
T 3iv7_A 78 ERARAVATDNEID---LLVCVGGGSTIGLAKAIAM--TTALPIVAIPTT--Y-AGSEATNVWGLTEAARKTTGVDLKVLP 149 (364)
T ss_dssp HHHHHHHHHTTCC---EEEEEESHHHHHHHHHHHH--HHCCCEEEEECS--S-SCGGGCCEEEEEETTEEEEEECGGGSC
T ss_pred HHHHHHHHhcCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEcCC--c-ccccccCeeEecCCCeeEeccCCCcCc
Confidence 9999999999999 9999999999999999965 689999999999 4 68999998777654446544 567899
Q ss_pred cEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCC-HHHHHHHHHHHHHhhHhh-----hhcch
Q 017815 163 QCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKAEV-----VSLDE 236 (365)
Q Consensus 163 ~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~-----v~~d~ 236 (365)
+++|+||+++.++|++++++|++|+++|++ |.|++...+..++.++.. .+.+.+.+.+++++..+. +....
T Consensus 150 ~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~As 226 (364)
T 3iv7_A 150 ETVIYDSELTMSLPVEMSVASGLNGLAHCI---DSLWGPNADPINAVLAAEGIRALNQGLPKIVANPHSIEGRDEALYGA 226 (364)
T ss_dssp SEEEECGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred eEEEEChHHHcCCCHHHHHHhHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999 666643222223322221 123344555555443221 11123
Q ss_pred hhhccc---cccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHH------------HHcCCCCHHHHHHHHHHHHH
Q 017815 237 KESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS------------YRLGWIDDSIVKRVHNILQQ 301 (365)
Q Consensus 237 ~~~g~r---~~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~------------~~~g~~~~~~~~~i~~ll~~ 301 (365)
..+|+. ..++..|.++|+|+.. | +++||+++|+.++..+++. +.+|. ++.++++.+|+++
T Consensus 227 ~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~~lg~--~~~~~~i~~l~~~ 301 (364)
T 3iv7_A 227 YLAAVSFASAGSGLHHKICHTLGGT--F-NLPHAQTHATVLPYVLAFNAGDAPEAERRAAAAFGT--DTALEGLQRLRLS 301 (364)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHT--S-CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTS--SSHHHHHHHHHHH
T ss_pred HHHhHHhhccCchHHHHHHhHhhhc--c-CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCC--chHHHHHHHHHHH
Confidence 455653 2456779999999986 5 7999999999998877643 33443 2357899999999
Q ss_pred cCCCCCCCCC-CCHHHHHHHHHhcccccCCeEEEEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 302 AKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 302 lglp~~~~~~-i~~~~~~~~l~~dkk~~~~~~~~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
+|+|+++.+. ++++++.+.....- .. . + .+.+ ..++.+++.+.+++
T Consensus 302 lglP~~L~e~Gi~~~~i~~~a~~a~--~~-~-----~---~~np---~~~t~~di~~il~~ 348 (364)
T 3iv7_A 302 VNAPKRLSDYGFEASGIAEAVDVTL--EK-V-----P---ANNP---RPVTRENLSRLLEA 348 (364)
T ss_dssp TTCCCCGGGGTCCGGGHHHHHHHHH--TT-S-----C---TTCS---SCCCHHHHHHHHHH
T ss_pred cCCCCcHHHcCCCHHHHHHHHHHHH--hh-c-----c---cCCC---CCCCHHHHHHHHHH
Confidence 9999999988 88888754443322 11 0 0 1111 26788888888865
No 22
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=100.00 E-value=4.3e-42 Score=334.23 Aligned_cols=319 Identities=11% Similarity=0.100 Sum_probs=229.0
Q ss_pred cccccccccceeeecccc----hhhhhccC--CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHH
Q 017815 8 YKDRFFGNSDTLLLISNN----CLYYRHVQ--GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMD 81 (365)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~----~~l~~~~~--~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~ 81 (365)
...+|+.|++++||.+.- +++++++. .+|++||+|+++.+. .+.+.|+..| +++ .+|++++++|+.+
T Consensus 21 ~~~~f~~p~~i~~G~g~l~~l~~~l~~~g~~~~~~~liVtd~~~~~~---~l~~~L~~~g--~~~--~~f~~v~~~pt~~ 93 (375)
T 3rf7_A 21 SFKNFKCVPKMIFGRGSFVQLDTVLEQERTDANDFVVFLVDDVHQHK---PLAARVPNKA--HDL--VIYVNVDDEPTTV 93 (375)
T ss_dssp TSCCCCCCSCEEESTTGGGGHHHHHHTTCCSTTCCEEEEEEGGGTTS---HHHHHSCCCT--TSE--EEEECCSSCCBHH
T ss_pred chhhhcCCCeEEEcCCHHHHHHHHHHHhcccCCCeEEEEECchhhhh---HHHHHHHhcC--CeE--EEEeCCCCCCCHH
Confidence 346899999999999974 44444421 378999999987653 4666777777 665 4578999999999
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----------------hcCCcEEEeccccccccccccCCce
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKT 145 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----------------~~g~p~i~IPTTl~A~~~s~~~~~~ 145 (365)
+++++++.+++.+.+|.|+||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.+
T Consensus 94 ~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT--agtgSevt~~a 171 (375)
T 3rf7_A 94 QVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTV--SGTGAEASRTA 171 (375)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESS--CSSCTTTCSCC
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCC--CccchhhCCeE
Confidence 999999999999966666999999999999999999876 358999999999 68999999999
Q ss_pred EEecCCCccee-eccCCccEEEEehhhhCCCCHHHHHhcHHHHHHHHHccChhHHHHHHHhhhhhhcCCHHHHHHHHHHH
Q 017815 146 GINHRLGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRS 224 (365)
Q Consensus 146 ~i~~~~~k~~~-~~~~~P~~viiD~~l~~tlP~~~~~sG~~D~lkha~~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 224 (365)
+++.+++|..+ +.++.|+++|+||+++.++|++++++|++|+++|++ |.|++...+..++.++ ....+++.+.
T Consensus 172 vit~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aa~g~Dal~Hai---Eay~s~~~~~~sd~~a---~~ai~li~~~ 245 (375)
T 3rf7_A 172 VLCGPVRKLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGMDCFIHCV---ESLQGTYLNEFAKAFA---EKSMDLCREV 245 (375)
T ss_dssp EEECSSCEEEEESGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHHH---HHHHHHHHHH
T ss_pred EEEeCCCeEEecccccCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHHH---HHHhccCCCHHHHHHH---HHHHHHHHHH
Confidence 99887777654 456799999999999999999999999999999999 7765422111222211 1112333333
Q ss_pred HHhh-----Hhhhhcchhhhcccc---ccCcchhHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 017815 225 CENK-----AEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVH 296 (365)
Q Consensus 225 ~~~~-----~~~v~~d~~~~g~r~---~l~~gH~~~Hale~~~~~~~~~HG~~vaig~~~~~~l~~~~g~~~~~~~~~i~ 296 (365)
+... .++. .....+|+.. .++..|.++|+|... + +++||+++|+.++..+++ ..+..+++.
T Consensus 246 l~~~~~~ar~~m~-~as~laG~a~~~~g~g~~Hai~h~L~~~--~-~i~HG~~~aillp~v~~~-------~~~~~~~~~ 314 (375)
T 3rf7_A 246 YLDDHPEKDDKLM-MASYMGGMSIAYSQVGACHAVSYGLGYV--L-GYHHGIGNCLAFDVLEEF-------YPEGVAEFR 314 (375)
T ss_dssp HTSCCTTHHHHHH-HHHHHHHHHHHTSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHTTCTTT-------SHHHHHHHH
T ss_pred HhhcCHHHHHHHH-HHHHHhchhhccCCcHHHHHHHHHHHhc--c-CCCchhhHHHHHHHHHHh-------CHHHHHHHH
Confidence 2211 1111 1133455532 345669999999887 4 789999999887765443 255688999
Q ss_pred HHHH--HcCCCCCCCCCCCHHHHHHHHHhcccccCCeEE--EEeeCCCCcceEEccCCCHHHHHHHHHH
Q 017815 297 NILQ--QAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLR--LILLKGPLGNCVFTGDYDRKALDDTLYA 361 (365)
Q Consensus 297 ~ll~--~lglp~~~~~~i~~~~~~~~l~~dkk~~~~~~~--~~l~~~~~g~~~~~~~~~~~~l~~~~~~ 361 (365)
++.+ ++|+|+++.+.+++|++.+.....-+. .++. ....+ .-..+++|++.+.+++
T Consensus 315 ~~~~~~~lglP~~L~~gi~~e~l~~~a~~A~~~--~~l~~~~~~~n-------~Pr~~t~edi~~i~~~ 374 (375)
T 3rf7_A 315 KMMEIHNITLPKNICKDLPDETIAKMVAVTKSM--GPLWDNVYGKG-------WEEKVTDEMLTKLFRR 374 (375)
T ss_dssp HHHHHTTCCCCCCSSTTCCHHHHHHHHHHHHTC--HHHHHHHHCTT-------CTTTSCHHHHHHHHHH
T ss_pred HHHHhcCCCCCCchhhCCCHHHHHHHHHHHHhh--hhccccCCCCC-------CCCCCCHHHHHHHHhh
Confidence 9998 699999998668888875433332111 1100 00000 0026788999988875
No 23
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=96.48 E-value=0.027 Score=47.52 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=70.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.++.||.+....-...++..+.|++-| +.+++-+.. .+.+.+.+.++.+.+.+.+++ +||++.|++ --+.+
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~g--i~~ev~V~S---aHR~p~~~~~~~~~a~~~g~~---ViIa~AG~a-a~Lpg 77 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLG--IPFEAHILS---AHRTPKETVEFVENADNRGCA---VFIAAAGLA-AHLAG 77 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTSHHHHHHHHHHHHHTTEE---EEEEEECSS-CCHHH
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcC--CCEEEEEEc---ccCCHHHHHHHHHHHHhCCCc---EEEEECChh-hhhHH
Confidence 478999998765558899999999988 665544433 478999999999999988888 999988885 56888
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+|+ ....|+|.|||.
T Consensus 78 vvA~--~t~~PVIgVP~~ 93 (169)
T 3trh_A 78 TIAA--HTLKPVIGVPMA 93 (169)
T ss_dssp HHHH--TCSSCEEEEECC
T ss_pred HHHh--cCCCCEEEeecC
Confidence 8865 578999999997
No 24
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=96.43 E-value=0.026 Score=47.81 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=70.8
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.++.||.+....-...++....|++-| +.+++-+.. .+.+.+.+.++++.+.+.+++ +||++.|++ --+.+
T Consensus 8 ~~V~IimgS~SD~~v~~~a~~~L~~~g--i~~ev~V~S---aHR~p~~~~~~~~~a~~~g~~---ViIa~AG~a-a~Lpg 78 (174)
T 3lp6_A 8 PRVGVIMGSDSDWPVMADAAAALAEFD--IPAEVRVVS---AHRTPEAMFSYARGAAARGLE---VIIAGAGGA-AHLPG 78 (174)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTCHHHHHHHHHHHHHHTCC---EEEEEEESS-CCHHH
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcC--CCEEEEEEC---CCCCHHHHHHHHHHHHhCCCC---EEEEecCch-hhhHH
Confidence 478999998865558899999999988 665544433 478999999999999999998 999888775 56888
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+|+ ....|+|.|||.
T Consensus 79 vvA~--~t~~PVIgVP~~ 94 (174)
T 3lp6_A 79 MVAA--ATPLPVIGVPVP 94 (174)
T ss_dssp HHHH--HCSSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8865 578999999998
No 25
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=96.37 E-value=0.03 Score=47.03 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=69.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.++.||++....-...++..+.|++-| +.+++-+.. .+.+.+.+.+..+.+.+.+++ +||++.|++ --+.+
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~g--i~~ev~V~S---aHRtp~~l~~~~~~~~~~g~~---ViIa~AG~a-a~Lpg 76 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLG--IGYECEVVS---AHRTPDKMFDYAETAKERGLK---VIIAGAGGA-AHLPG 76 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTT--CEEEEEECC---TTTCHHHHHHHHHHTTTTTCC---EEEEEECSS-CCHHH
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcC--CCEEEEEEc---CcCCHHHHHHHHHHHHhCCCc---EEEEECCcc-hhhHH
Confidence 378899998865558899999999988 665544433 478999999999888888887 999988885 55888
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+|+ ....|+|.|||.
T Consensus 77 vvA~--~t~~PVIgVP~~ 92 (166)
T 3oow_A 77 MVAA--KTTLPVLGVPVK 92 (166)
T ss_dssp HHHH--TCSSCEEEEECC
T ss_pred HHHh--ccCCCEEEeecC
Confidence 8865 578999999997
No 26
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=96.29 E-value=0.023 Score=47.63 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=69.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.++.||++....-...++..+.|++-| +.+++-+.. .+.+.+.+.++.+.+.+.+++ +||++.|++ --+.+
T Consensus 4 ~~V~Iimgs~SD~~v~~~a~~~l~~~g--i~~ev~V~S---aHR~p~~~~~~~~~a~~~g~~---ViIa~AG~a-a~Lpg 74 (163)
T 3ors_A 4 MKVAVIMGSSSDWKIMQESCNMLDYFE--IPYEKQVVS---AHRTPKMMVQFASEARERGIN---IIIAGAGGA-AHLPG 74 (163)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTSHHHHHHHHHHTTTTTCC---EEEEEEESS-CCHHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcC--CCEEEEEEC---CcCCHHHHHHHHHHHHhCCCc---EEEEECCch-hhhHH
Confidence 468899988765558899999999988 665544433 478999999999888888888 899888775 56888
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+|+ ....|+|.|||.
T Consensus 75 vvA~--~t~~PVIgVP~~ 90 (163)
T 3ors_A 75 MVAS--LTTLPVIGVPIE 90 (163)
T ss_dssp HHHH--HCSSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8865 578999999997
No 27
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=96.23 E-value=0.026 Score=47.73 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=70.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
..++.||++....-...++..+.|++-| +.+++-+.. .+.+.+.+.++.+.+.+.+++ +||++.|++ --+.
T Consensus 12 ~~~V~IimGS~SD~~v~~~a~~~L~~~G--i~~ev~V~S---aHR~p~~~~~~~~~a~~~g~~---ViIa~AG~a-a~Lp 82 (174)
T 3kuu_A 12 GVKIAIVMGSKSDWATMQFAADVLTTLN--VPFHVEVVS---AHRTPDRLFSFAEQAEANGLH---VIIAGNGGA-AHLP 82 (174)
T ss_dssp CCCEEEEESSGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTCHHHHHHHHHHTTTTTCS---EEEEEEESS-CCHH
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcC--CCEEEEEEc---ccCCHHHHHHHHHHHHhCCCc---EEEEECChh-hhhH
Confidence 3579999998865558899999999988 665544433 478999999999888888888 899888775 5688
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+ ....|+|.|||.
T Consensus 83 gvvA~--~t~~PVIgVP~~ 99 (174)
T 3kuu_A 83 GMLAA--KTLVPVLGVPVQ 99 (174)
T ss_dssp HHHHH--TCSSCEEEEEEC
T ss_pred HHHHh--ccCCCEEEeeCC
Confidence 88865 578999999997
No 28
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=96.19 E-value=0.058 Score=45.08 Aligned_cols=87 Identities=11% Similarity=0.188 Sum_probs=68.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHhhHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~D~a 113 (365)
.++.||++....-...++..+.|++-| +.+++-+.. .+.+.+.+.++.+.+.+. +++ +||++-|++ --+.
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~g--i~~ev~V~s---aHR~p~~~~~~~~~a~~~~~~~---ViIa~AG~a-a~Lp 73 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFG--IEYAIRIGS---AHKTAEHVVSMLKEYEALDRPK---LYITIAGRS-NALS 73 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTT--CEEEEEECC---TTTCHHHHHHHHHHHHTSCSCE---EEEEECCSS-CCHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcC--CCEEEEEEc---ccCCHHHHHHHHHHhhhcCCCc---EEEEECCch-hhhH
Confidence 368899988765558889999999988 666544433 478999999999888765 577 999988875 5688
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+ ....|+|.|||.
T Consensus 74 gvvA~--~t~~PVIgVP~~ 90 (159)
T 3rg8_A 74 GFVDG--FVKGATIACPPP 90 (159)
T ss_dssp HHHHH--HSSSCEEECCCC
T ss_pred HHHHh--ccCCCEEEeeCC
Confidence 88865 578999999997
No 29
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=96.05 E-value=0.034 Score=47.36 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=69.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.++.||.+....-...++....|++-| +.+++-+.. .+.+.+.+.++.+.+.+.|++ +||++.|++ --+.+
T Consensus 22 ~~V~IimGS~SD~~v~~~a~~~L~~~G--i~~dv~V~S---aHR~p~~l~~~~~~a~~~g~~---ViIa~AG~a-a~Lpg 92 (182)
T 1u11_A 22 PVVGIIMGSQSDWETMRHADALLTELE--IPHETLIVS---AHRTPDRLADYARTAAERGLN---VIIAGAGGA-AHLPG 92 (182)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTCHHHHHHHHHHTTTTTCC---EEEEEEESS-CCHHH
T ss_pred CEEEEEECcHHHHHHHHHHHHHHHHcC--CCeEEEEEc---ccCCHHHHHHHHHHHHhCCCc---EEEEecCch-hhhHH
Confidence 479999998866558889999999988 665544433 478999999999888888888 899888874 56888
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+|+ ....|+|.||+.
T Consensus 93 vvA~--~t~~PVIgVP~~ 108 (182)
T 1u11_A 93 MCAA--WTRLPVLGVPVE 108 (182)
T ss_dssp HHHH--HCSSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8865 579999999997
No 30
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=96.00 E-value=0.045 Score=46.70 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=69.7
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
..+.||++....-...++....|++-| +++++-+.. .+.+.+.+.++.+.+.+.+++ +||++.|++ --+.+
T Consensus 14 ~~V~IimGS~SD~~v~~~a~~~L~~~G--i~~dv~V~S---aHR~p~~l~~~~~~a~~~g~~---ViIa~AG~a-a~Lpg 84 (183)
T 1o4v_A 14 PRVGIIMGSDSDLPVMKQAAEILEEFG--IDYEITIVS---AHRTPDRMFEYAKNAEERGIE---VIIAGAGGA-AHLPG 84 (183)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTT--CEEEEEECC---TTTCHHHHHHHHHHTTTTTCC---EEEEEEESS-CCHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHcC--CCeEEEEEc---ccCCHHHHHHHHHHHHhCCCc---EEEEecCcc-cccHH
Confidence 468889988765558899999999988 665544433 478999999999888888888 899888774 56888
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+|+ ....|+|.|||.
T Consensus 85 vvA~--~t~~PVIgVP~~ 100 (183)
T 1o4v_A 85 MVAS--ITHLPVIGVPVK 100 (183)
T ss_dssp HHHH--HCSSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8865 589999999997
No 31
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=95.96 E-value=0.06 Score=45.45 Aligned_cols=88 Identities=20% Similarity=0.223 Sum_probs=70.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
.-++.||.+....-...++..+.|++-| +.+++.+.. .+.+.+.+.+.++.+.+.+++ +||++=|| .--+.
T Consensus 12 ~P~V~IimGS~SD~~v~~~a~~~l~~~g--i~~ev~V~s---aHR~p~~l~~~~~~a~~~g~~---ViIa~AG~-aahLp 82 (173)
T 4grd_A 12 APLVGVLMGSSSDWDVMKHAVAILQEFG--VPYEAKVVS---AHRMPDEMFDYAEKARERGLR---AIIAGAGG-AAHLP 82 (173)
T ss_dssp SCSEEEEESSGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTSHHHHHHHHHHHTTTTCS---EEEEEEES-SCCHH
T ss_pred CCeEEEEeCcHhHHHHHHHHHHHHHHcC--CCEEEEEEc---cccCHHHHHHHHHHHHhcCCe---EEEEeccc-cccch
Confidence 3479999998865558888889999988 665544433 467999999999998888888 88887776 45688
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+ ...+|+|.||+.
T Consensus 83 gvvA~--~t~~PVIgVPv~ 99 (173)
T 4grd_A 83 GMLAA--KTTVPVLGVPVA 99 (173)
T ss_dssp HHHHH--HCCSCEEEEEEC
T ss_pred hhhee--cCCCCEEEEEcC
Confidence 88865 579999999998
No 32
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=95.88 E-value=0.044 Score=46.18 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=69.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
.++.||++....-...++..+.|++-| +++++-+.. .+.+.+.+.++.+.+.+.+++ +||++.|++ --+.+
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~G--i~~dv~V~S---aHR~p~~l~~~~~~a~~~g~~---ViIa~AG~a-a~Lpg 82 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDELN--IPYEKKVVS---AHRTPDYMFEYAETARERGLK---VIIAGAGGA-AHLPG 82 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTSHHHHHHHHHHTTTTTCC---EEEEEEESS-CCHHH
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcC--CCEEEEEEe---ccCCHHHHHHHHHHHHhCCCc---EEEEECCch-hhhHH
Confidence 468899988765558889999999988 665544433 477999999999888888888 899888875 56888
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.+|+ ....|+|.|||.
T Consensus 83 vvA~--~t~~PVIgVP~~ 98 (170)
T 1xmp_A 83 MVAA--KTNLPVIGVPVQ 98 (170)
T ss_dssp HHHT--TCCSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8854 579999999997
No 33
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=94.97 E-value=0.17 Score=49.08 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=69.4
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCcceEEEecCchHhhHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRL-DRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~-dr~~~IIaiGGGsv~D~a 113 (365)
.++.||++....-...++....|+.-| +.+.+-+.. .+.+.+.+.++.+.+.+.++ + +|||+.|++ --+.
T Consensus 266 ~~V~Ii~gs~SD~~~~~~a~~~l~~~g--i~~~v~V~s---aHR~p~~~~~~~~~~~~~g~~~---viIa~AG~~-a~Lp 336 (425)
T 2h31_A 266 CRVVVLMGSTSDLGHCEKIKKACGNFG--IPCELRVTS---AHKGPDETLRIKAEYEGDGIPT---VFVAVAGRS-NGLG 336 (425)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTCHHHHHHHHHHHHTTCCCE---EEEEECCSS-CCHH
T ss_pred CeEEEEecCcccHHHHHHHHHHHHHcC--CceEEeeee---ccCCHHHHHHHHHHHHHCCCCe---EEEEEcCcc-cchH
Confidence 479999998866568888999999988 665544433 47899999999999988887 6 888888774 5688
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+ ....|+|.|||.
T Consensus 337 gvva~--~t~~PVIgvP~~ 353 (425)
T 2h31_A 337 PVMSG--NTAYPVISCPPL 353 (425)
T ss_dssp HHHHH--HCSSCEEECCCC
T ss_pred hHHhc--cCCCCEEEeeCc
Confidence 88865 579999999985
No 34
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=94.78 E-value=0.22 Score=42.31 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=68.0
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
.|-||.+....-...++..+.|++-| +.++..+.. .+.+.+.+.+.++.+.+.|++ +|||.=||+ --+.+.
T Consensus 24 ~V~IimGS~SD~~v~~~a~~~L~~~g--I~~e~~V~S---AHRtp~~l~~~~~~a~~~g~~---ViIa~AG~a-ahLpGv 94 (181)
T 4b4k_A 24 LVGVIMGSTSDWETMKYACDILDELN--IPYEKKVVS---AHRTPDYMFEYAETARERGLK---VIIAGAGGA-AHLPGM 94 (181)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTSHHHHHHHHHHTTTTTCC---EEEEEECSS-CCHHHH
T ss_pred cEEEEECCHhHHHHHHHHHHHHHHcC--CCeeEEEEc---cccChHHHHHHHHHHHhcCce---EEEEecccc-ccchhh
Confidence 47788888765558888888999988 666555544 467899999999888888888 899887775 567788
Q ss_pred HHHHhhcCCcEEEeccc
Q 017815 116 AAASYLRGVSFIQIPTT 132 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTT 132 (365)
+|+ ...+|+|.||+.
T Consensus 95 vAa--~T~~PVIGVPv~ 109 (181)
T 4b4k_A 95 VAA--KTNLPVIGVPVQ 109 (181)
T ss_dssp HHT--TCCSCEEEEECC
T ss_pred HHh--cCCCCEEEEecC
Confidence 864 678999999996
No 35
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=94.49 E-value=0.15 Score=47.86 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=57.2
Q ss_pred ceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhH
Q 017815 35 KKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDM 112 (365)
Q Consensus 35 ~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ 112 (365)
+|++||.++...+ ...+++.+.|.+.| +++.+.. ... + ....+++..+...++| +||++|| |++..+
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g--~~~~~~~-t~~-~----~~~~~~~~~~~~~~~d---~vvv~GGDGTl~~v 98 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEG--MTIHVRV-TWE-K----GDAARYVEEARKFGVA---TVIAGGGDGTINEV 98 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTT--CCEEEEE-CCS-T----THHHHHHHHHHHHTCS---EEEEEESHHHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcC--CcEEEEE-ecC-c----chHHHHHHHHHhcCCC---EEEEEccchHHHHH
Confidence 6799999976543 35677888899888 6654332 111 1 1233444555555677 9999988 888888
Q ss_pred HHHHHHHh-hcCCcEEEeccc
Q 017815 113 CGYAAASY-LRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~-~~g~p~i~IPTT 132 (365)
+..++... ..++|+..||.-
T Consensus 99 ~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 99 STALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHhhcccCCCCeEEEecCc
Confidence 87663211 467899999986
No 36
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=92.75 E-value=0.46 Score=39.51 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=59.6
Q ss_pred EEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHH
Q 017815 37 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 116 (365)
Q Consensus 37 ~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~v 116 (365)
+.||++....-...++....|++-| +.+++-+.. .+.+.+.+.++.+...+ + +||++.|++ --+.+.+
T Consensus 2 V~Iimgs~SD~~v~~~a~~~l~~~g--i~~dv~V~s---aHR~p~~~~~~~~~a~~---~---ViIa~AG~a-a~Lpgvv 69 (157)
T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFG--VEFEVRVAS---AHRTPELVEEIVKNSKA---D---VFIAIAGLA-AHLPGVV 69 (157)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTT--CCEEEEECC---TTTCHHHHHHHHHHCCC---S---EEEEEEESS-CCHHHHH
T ss_pred EEEEEccHHHHHHHHHHHHHHHHcC--CCeEEEEEc---ccCCHHHHHHHHHhcCC---C---EEEEEcCch-hhhHHHH
Confidence 5677877765558888889999988 665544433 46788888877754322 4 888888774 5688888
Q ss_pred HHHhhcCCcEEEeccc
Q 017815 117 AASYLRGVSFIQIPTT 132 (365)
Q Consensus 117 A~~~~~g~p~i~IPTT 132 (365)
|+ ....|+|.|||+
T Consensus 70 a~--~t~~PVIgVP~~ 83 (157)
T 2ywx_A 70 AS--LTTKPVIAVPVD 83 (157)
T ss_dssp HT--TCSSCEEEEEEC
T ss_pred Hh--ccCCCEEEecCC
Confidence 54 579999999993
No 37
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=90.63 E-value=0.53 Score=42.81 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=45.2
Q ss_pred eEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHH
Q 017815 36 KVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMC 113 (365)
Q Consensus 36 ~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~a 113 (365)
|+.|++.+.-. ....+++.+.|++.| +++ . ..++| +||++|| |+++.++
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g--~~v-----~-------------------~~~~D---~vv~lGGDGT~l~aa 52 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYD--MEY-----D-------------------DVEPE---IVISIGGDGTFLSAF 52 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSS--CEE-----C-------------------SSSCS---EEEEEESHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCC--CEe-----C-------------------CCCCC---EEEEEcCcHHHHHHH
Confidence 56777775321 236788888898888 543 1 23556 9999987 7888888
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
+.++. ...++|++-||+.
T Consensus 53 ~~~~~-~~~~~PilGIn~G 70 (272)
T 2i2c_A 53 HQYEE-RLDEIAFIGIHTG 70 (272)
T ss_dssp HHTGG-GTTTCEEEEEESS
T ss_pred HHHhh-cCCCCCEEEEeCC
Confidence 76521 1138999999874
No 38
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=89.95 E-value=1.5 Score=37.81 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=55.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
++|+-+|.-++.... .+.+.+.|. +++..+.+. +.+++++.++.+++.|++ +| |||+.+.++|
T Consensus 94 ~~kIavvg~~~~~~~-~~~~~~ll~-----~~i~~~~~~------~~~e~~~~i~~l~~~G~~---vv--VG~~~~~~~A 156 (196)
T 2q5c_A 94 GNELALIAYKHSIVD-KHEIEAMLG-----VKIKEFLFS------SEDEITTLISKVKTENIK---IV--VSGKTVTDEA 156 (196)
T ss_dssp CSEEEEEEESSCSSC-HHHHHHHHT-----CEEEEEEEC------SGGGHHHHHHHHHHTTCC---EE--EECHHHHHHH
T ss_pred CCcEEEEeCcchhhH-HHHHHHHhC-----CceEEEEeC------CHHHHHHHHHHHHHCCCe---EE--ECCHHHHHHH
Confidence 568888887776543 345555553 455555554 567889999999999999 65 5699999998
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
+ ..|+|.+.|-+.
T Consensus 157 ~------~~Gl~~vli~sg 169 (196)
T 2q5c_A 157 I------KQGLYGETINSG 169 (196)
T ss_dssp H------HTTCEEEECCCC
T ss_pred H------HcCCcEEEEecC
Confidence 6 358998888654
No 39
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=89.78 E-value=1.7 Score=40.65 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=56.0
Q ss_pred ceEEEEEccCch----HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chH
Q 017815 35 KKVLVVTNNTVA----PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 109 (365)
Q Consensus 35 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv 109 (365)
+|++||.++... +...+++.+.|++.| +++.++. ... + ....+++..+...++| .||++|| |++
T Consensus 25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g--~~~~~~~-t~~---~--~~a~~~~~~~~~~~~d---~vvv~GGDGTv 93 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAG--YETSAYA-TEK---I--GDATLEAERAMHENYD---VLIAAGGDGTL 93 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTT--EEEEEEE-CCS---T--THHHHHHHHHTTTTCS---EEEEEECHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHHHHcC--CeEEEEE-ecC---c--chHHHHHHHHhhcCCC---EEEEEcCchHH
Confidence 679999998654 235688999999988 6654332 111 1 1334444444444555 9999988 777
Q ss_pred hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
..++..+.. ...++|+..||.-
T Consensus 94 ~~v~~~l~~-~~~~~pl~iIP~G 115 (337)
T 2qv7_A 94 NEVVNGIAE-KPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHTT-CSSCCEEEEEECS
T ss_pred HHHHHHHHh-CCCCCcEEEecCC
Confidence 777654411 2467899999986
No 40
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=89.34 E-value=1.8 Score=38.26 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=54.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
++|+-+|+-++.... .+.+.+.|. +++..+.+. +.+++++.++.+++.|++ +| |||+.+.++|
T Consensus 106 ~~kIavVg~~~~~~~-~~~i~~ll~-----~~i~~~~~~------~~ee~~~~i~~l~~~G~~---vV--VG~~~~~~~A 168 (225)
T 2pju_A 106 TSSIGVVTYQETIPA-LVAFQKTFN-----LRLDQRSYI------TEEDARGQINELKANGTE---AV--VGAGLITDLA 168 (225)
T ss_dssp TSCEEEEEESSCCHH-HHHHHHHHT-----CCEEEEEES------SHHHHHHHHHHHHHTTCC---EE--EESHHHHHHH
T ss_pred CCcEEEEeCchhhhH-HHHHHHHhC-----CceEEEEeC------CHHHHHHHHHHHHHCCCC---EE--ECCHHHHHHH
Confidence 567888888776553 355666664 444455554 778999999999999999 55 5799999998
Q ss_pred HHHHHHhhcCCcEEEec
Q 017815 114 GYAAASYLRGVSFIQIP 130 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IP 130 (365)
+ ..|+|.+.|-
T Consensus 169 ~------~~Gl~~vlI~ 179 (225)
T 2pju_A 169 E------EAGMTGIFIY 179 (225)
T ss_dssp H------HTTSEEEESS
T ss_pred H------HcCCcEEEEC
Confidence 6 3588888775
No 41
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=88.48 E-value=1.7 Score=40.02 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=54.2
Q ss_pred CceEEEEEccCch----HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-ch
Q 017815 34 GKKVLVVTNNTVA----PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 108 (365)
Q Consensus 34 ~~~~livtd~~~~----~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gs 108 (365)
-+|+++|.++... +...+++.+.|.+.| +++.++. .. ......++++.+.+ ++| .||++|| |+
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~--~~~~~~~-t~-----~~~~a~~~~~~~~~-~~d---~vv~~GGDGT 75 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAF--PDLHILH-TK-----EQGDATKYCQEFAS-KVD---LIIVFGGDGT 75 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHC--SEEEEEE-CC-----STTHHHHHHHHHTT-TCS---EEEEEECHHH
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHcC--CeEEEEE-cc-----CcchHHHHHHHhhc-CCC---EEEEEccchH
Confidence 4789999998643 235678888898888 6665432 21 12244555555432 555 8888888 56
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+..++..++. ...++|+..||.-
T Consensus 76 l~~v~~~l~~-~~~~~~l~iiP~G 98 (304)
T 3s40_A 76 VFECTNGLAP-LEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHTT-CSSCCEEEEEECS
T ss_pred HHHHHHHHhh-CCCCCcEEEecCC
Confidence 6556543311 1257899999986
No 42
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=88.11 E-value=1.1 Score=41.93 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+.+..+++++.+++.++| .+|.|||--.++.|..++ ..++|+|.||-|.
T Consensus 79 ~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~---~~~i~vvgiPkTI 127 (320)
T 1pfk_A 79 DENIRAVAIENLKKRGID---ALVVIGGDGSYMGAMRLT---EMGFPCIGLPGTI 127 (320)
T ss_dssp SHHHHHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHH---HTTCCEEEEEBCT
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEECCCchHHHHHHHH---hhCCCEEEEeccc
Confidence 667899999999999999 999999999999987764 3599999999997
No 43
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=87.42 E-value=1 Score=42.06 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
++.+..+++++.+++.++| .+|.|||--.++.|..++ ..++|+|.||-|.
T Consensus 77 ~~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~---~~~i~vvgiPkTI 126 (319)
T 1zxx_A 77 AEEEGQLAGIEQLKKHGID---AVVVIGGDGSYHGALQLT---RHGFNSIGLPGTI 126 (319)
T ss_dssp TSHHHHHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHH---HTTCCEEEEEEET
T ss_pred CCHHHHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHH---HhCCCEEEEeecc
Confidence 3667899999999999999 999999999999987764 3599999999997
No 44
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=86.77 E-value=1.1 Score=43.49 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh-h--cCCcEEEecccc---ccccccccC
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-L--RGVSFIQIPTTV---MAQVDSSVG 142 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~-~--~g~p~i~IPTTl---~A~~~s~~~ 142 (365)
+.+..+++++.+++.++| .+|.|||--.++.|..++-.. . .++|+|-||-|. +.+||-++|
T Consensus 89 ~~~~~~~~~~~l~~~~Id---~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~G 155 (419)
T 3hno_A 89 NRREYERLIEVFKAHDIG---YFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPG 155 (419)
T ss_dssp CHHHHHHHHHHHHHTTEE---EEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTT
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCC
Confidence 678899999999999999 999999988888887775322 2 359999999997 445554444
No 45
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=86.14 E-value=1 Score=42.00 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
++.+..+++++.+++.++| .++.|||--.++.|..++ ..++|+|.||=|.
T Consensus 77 ~~~e~~~~~~~~l~~~~Id---~L~~IGGdgS~~~a~~l~---~~~i~vigiPkTI 126 (319)
T 4a3s_A 77 KTVEGREKGIANLKKLGIE---GLVVIGGDGSYMGAKKLT---EHGFPCVGVPGTI 126 (319)
T ss_dssp HSHHHHHHHHHHHHHHTCC---EEEEEECTTHHHHHHHHH---HTTCCEEEEEEET
T ss_pred ccHHHHHHHHHHHHHcCCC---EEEEeCCcHHHHHHHHHh---ccCCcEEEeeccc
Confidence 3567889999999999999 999999999999987664 4699999999996
No 46
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=85.88 E-value=5 Score=30.99 Aligned_cols=74 Identities=9% Similarity=0.067 Sum_probs=49.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
..+++||.|... ..+.+.+.|...| +++. .+. + ..++.+.+.+..+| +|| +.+..-+++.
T Consensus 18 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~l~~~~~d---lvi-~~~~~g~~~~ 77 (137)
T 2pln_A 18 SMRVLLIEKNSV---LGGEIEKGLNVKG--FMAD--VTE------S---LEDGEYLMDIRNYD---LVM-VSDKNALSFV 77 (137)
T ss_dssp CSEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------C---HHHHHHHHHHSCCS---EEE-ECSTTHHHHH
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHHcC--cEEE--EeC------C---HHHHHHHHHcCCCC---EEE-EcCccHHHHH
Confidence 568888877754 3455566676677 6543 232 2 33444555666777 999 9888888998
Q ss_pred HHHHHHhhc-CCcEEEe
Q 017815 114 GYAAASYLR-GVSFIQI 129 (365)
Q Consensus 114 k~vA~~~~~-g~p~i~I 129 (365)
+.+... . .+|+|.+
T Consensus 78 ~~l~~~--~~~~~ii~l 92 (137)
T 2pln_A 78 SRIKEK--HSSIVVLVS 92 (137)
T ss_dssp HHHHHH--STTSEEEEE
T ss_pred HHHHhc--CCCccEEEE
Confidence 887543 5 7788776
No 47
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=79.42 E-value=6.6 Score=36.07 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=48.3
Q ss_pred ceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHH--------------HHHHHH-HHHHHcCCCC
Q 017815 35 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMD--------------TLMKVF-DKAIESRLDR 97 (365)
Q Consensus 35 ~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~--------------~v~~~~-~~~~~~~~dr 97 (365)
+|++||..+.-.+. ..+++.+.|.+.| +++.+. ..... .+. .+.... +.....++|
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g--~~v~~~--~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d- 77 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNK--IALRVL--SAEAV--DRGSLHLAPDDMRAMGVEIEVVDADQHAADGCE- 77 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTT--CEEEEE--C-------------------------------------CC-
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCC--CEEEEe--cchhh--hhhcccccccccccccccccccccccccccCCC-
Confidence 68899988765432 6888999999998 665322 21111 100 011110 011223455
Q ss_pred cceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+||++|| |+++-+++.++ ..++|++.|++.
T Consensus 78 --~vi~~GGDGT~l~a~~~~~---~~~~pvlgi~~G 108 (307)
T 1u0t_A 78 --LVLVLGGDGTFLRAAELAR---NASIPVLGVNLG 108 (307)
T ss_dssp --CEEEEECHHHHHHHHHHHH---HHTCCEEEEECS
T ss_pred --EEEEEeCCHHHHHHHHHhc---cCCCCEEEEeCC
Confidence 9999988 77777776653 347899999853
No 48
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=78.79 E-value=3.3 Score=41.56 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---hcCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---~~g~p~i~IPTTl 133 (365)
++.+..+++++.+++.++| .+|.|||--.++.|..++-.+ ..++|+|.||-|.
T Consensus 150 ~~~e~~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTI 205 (555)
T 2f48_A 150 ETEEHYNKALFVAKENNLN---AIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTI 205 (555)
T ss_dssp CSHHHHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEecccc
Confidence 4567899999999999999 999999999999888775432 2479999999987
No 49
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=77.74 E-value=2.6 Score=38.52 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=45.1
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ak 114 (365)
|+.|++.+.-. .+++.+.|++.| +++. ..+.... .+ .++| +||++|| |+.+.+++
T Consensus 31 ki~iv~~~~~~---~~~l~~~L~~~g--~~v~--~~~~~~~-----~~---------~~~D---lvIvlGGDGT~L~aa~ 86 (278)
T 1z0s_A 31 RAAVVYKTDGH---VKRIEEALKRLE--VEVE--LFNQPSE-----EL---------ENFD---FIVSVGGDGTILRILQ 86 (278)
T ss_dssp EEEEEESSSTT---HHHHHHHHHHTT--CEEE--EESSCCG-----GG---------GGSS---EEEEEECHHHHHHHHT
T ss_pred EEEEEeCCcHH---HHHHHHHHHHCC--CEEE--Ecccccc-----cc---------CCCC---EEEEECCCHHHHHHHH
Confidence 57888876543 778888999988 6653 2221111 00 2456 9999988 77778876
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
.++ .. +|++-|.|-
T Consensus 87 ~~~---~~-~PilGIN~G 100 (278)
T 1z0s_A 87 KLK---RC-PPIFGINTG 100 (278)
T ss_dssp TCS---SC-CCEEEEECS
T ss_pred HhC---CC-CcEEEECCC
Confidence 541 23 899999764
No 50
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=76.64 E-value=6.1 Score=37.80 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=48.5
Q ss_pred CceEEEEEccCchHH--HHHHHHHHHhhC--CCCceEEEEEeCCCCCCCCHHHHHHHH---------------------H
Q 017815 34 GKKVLVVTNNTVAPL--YLDKVTDALTRG--NPNVSVENVILPDGENYKNMDTLMKVF---------------------D 88 (365)
Q Consensus 34 ~~~~livtd~~~~~~--~~~~v~~~L~~~--g~~i~v~~~~~~~~e~~~~~~~v~~~~---------------------~ 88 (365)
.++++||+.+.-.+. ..+++.+.|.+. | +++ + +.. +....+. .
T Consensus 41 ~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~g--i~V--~-ve~-------~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (388)
T 3afo_A 41 LQNVYITKKPWTPSTREAMVEFITHLHESYPE--VNV--I-VQP-------DVAEEISQDFKSPLENDPNRPHILYTGPE 108 (388)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHHCTT--CEE--E-CCH-------HHHHHHHTTCCSCGGGCTTSCEEEEECCH
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--eEE--E-EeC-------chhhhhhhhccccccccccccccccccch
Confidence 478999999765433 677888888876 5 543 2 211 0111100 0
Q ss_pred HHHHcCCCCcceEEEecC-chHhhHHHHHHHHhhcCC-cEEEeccc
Q 017815 89 KAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGV-SFIQIPTT 132 (365)
Q Consensus 89 ~~~~~~~dr~~~IIaiGG-Gsv~D~ak~vA~~~~~g~-p~i~IPTT 132 (365)
.....++| +||++|| |+++-+++.+ ...++ |++.|++.
T Consensus 109 ~~~~~~~D---lVIvlGGDGTlL~aa~~~---~~~~vpPiLGIN~G 148 (388)
T 3afo_A 109 QDIVNRTD---LLVTLGGDGTILHGVSMF---GNTQVPPVLAFALG 148 (388)
T ss_dssp HHHHHHCS---EEEEEESHHHHHHHHHTT---TTSCCCCEEEEECS
T ss_pred hhcccCCC---EEEEEeCcHHHHHHHHHh---cccCCCeEEEEECC
Confidence 01123456 9999988 7777776544 23567 89999864
No 51
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=76.60 E-value=4 Score=42.53 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH---h-hcCCcEEEecccc---ccccccccCCceEE
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---Y-LRGVSFIQIPTTV---MAQVDSSVGGKTGI 147 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~---~-~~g~p~i~IPTTl---~A~~~s~~~~~~~i 147 (365)
.+..+++++.+++.++| .+|.|||--.++.|..++.. + ..++|+|.||-|. +.+||-++|--+++
T Consensus 475 ~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~ 546 (762)
T 3o8l_A 475 KKSFEQISANITKFNIQ---GLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTAL 546 (762)
T ss_dssp GGGHHHHHHHHHHTTCC---CEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHH
T ss_pred HHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHH
Confidence 56789999999999999 99999998888888766432 1 1489999999998 45555555544443
No 52
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=76.14 E-value=7.8 Score=35.11 Aligned_cols=84 Identities=18% Similarity=0.066 Sum_probs=47.5
Q ss_pred ceEEEEEccCchH--HHHHHHHHHHhhCCCCceEEEEEeCCCCC---CCCHHHHHHHHHHHHHcCCCCcceEEEecC-ch
Q 017815 35 KKVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPDGEN---YKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 108 (365)
Q Consensus 35 ~~~livtd~~~~~--~~~~~v~~~L~~~g~~i~v~~~~~~~~e~---~~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gs 108 (365)
+|++||+.+.-.+ ...+++.+.|.+.| +++.. .+.... .+.... ........++| +||++|| |+
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g--~~v~~--~~~~~~~~~~~~~~~---~~~~~~~~~~D---~vi~~GGDGT 75 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQG--YEVIV--EQQIAHELQLKNVPT---GTLAEIGQQAD---LAVVVGGDGN 75 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTT--CEEEE--EHHHHHHTTCSSCCE---ECHHHHHHHCS---EEEECSCHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCC--CEEEE--ecchhhhcccccccc---cchhhcccCCC---EEEEEcCcHH
Confidence 6888998865322 26788899999988 66532 211000 000000 00111233566 9999988 67
Q ss_pred HhhHHHHHHHHhhcCCcEEEecc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPT 131 (365)
+.-++..+ ...++|++.||+
T Consensus 76 ~l~a~~~~---~~~~~P~lGI~~ 95 (292)
T 2an1_A 76 MLGAARTL---ARYDINVIGINR 95 (292)
T ss_dssp HHHHHHHH---TTSSCEEEEBCS
T ss_pred HHHHHHHh---hcCCCCEEEEEC
Confidence 77777655 235789999984
No 53
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=75.41 E-value=4.2 Score=43.28 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----hcCCcEEEecccc---ccccccccCC
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTV---MAQVDSSVGG 143 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----~~g~p~i~IPTTl---~A~~~s~~~~ 143 (365)
.+...++++.+++.++| .+|.|||--.++.|..++... ..++|+|.||-|. +.+||-++|-
T Consensus 674 ~~~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGF 741 (989)
T 3opy_A 674 SDDMGTVAYYFQQYKFD---GLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGS 741 (989)
T ss_dssp GGGHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTH
T ss_pred hhhHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCCh
Confidence 45788999999999999 999999988888887765421 1389999999997 3344444443
No 54
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=73.32 E-value=24 Score=33.37 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=51.8
Q ss_pred cCCceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCC------CCHHHHHHHHHHHH------HcCCCC
Q 017815 32 VQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENY------KNMDTLMKVFDKAI------ESRLDR 97 (365)
Q Consensus 32 ~~~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~------~~~~~v~~~~~~~~------~~~~dr 97 (365)
...++++||+-.+-... ...++.+.|.+.| ++| ++-...... ..+.... .... +.-.+.
T Consensus 36 ~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~--~~V--~ve~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 108 (365)
T 3pfn_A 36 KSPKSVLVIKKMRDASLLQPFKELCTHLMEEN--MIV--YVEKKVLEDPAIASDESFGAVK---KKFCTFREDYDDISNQ 108 (365)
T ss_dssp SCCCEEEEEECTTCGGGHHHHHHHHHHHHHTS--CEE--EEEHHHHHSHHHHHCSTTHHHH---HHCEEECTTTCCCTTT
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCC--CEE--EEehHHhhhhcccccccccccc---ccccccccChhhcccC
Confidence 34789999987664433 6788888898888 664 221110000 0000000 0000 001123
Q ss_pred cceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.|+||.+|| |+++-+++.+ ...++|++.|-+.
T Consensus 109 ~DlvI~lGGDGT~L~aa~~~---~~~~~PvlGiN~G 141 (365)
T 3pfn_A 109 IDFIICLGGDGTLLYASSLF---QGSVPPVMAFHLG 141 (365)
T ss_dssp CSEEEEESSTTHHHHHHHHC---SSSCCCEEEEESS
T ss_pred CCEEEEEcChHHHHHHHHHh---ccCCCCEEEEcCC
Confidence 469999998 8888888754 2457899888654
No 55
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=73.16 E-value=24 Score=32.20 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=55.0
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEE-EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~-~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+. +.+|+.+|++...+.. ..+.+++.|++.| +++. ...++.+.. + +...++.+++.++| .|+
T Consensus 143 ~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G--~~v~~~~~~~~~~~--d---~~~~~~~l~~~~~d---ai~ 211 (375)
T 4evq_A 143 GDAMIKA-GLKKAVTVTWKYAAGEEMVSGFKKSFTAGK--GEVVKDITIAFPDV--E---FQSALAEIASLKPD---CVY 211 (375)
T ss_dssp HHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEECTTCC--C---CHHHHHHHHHHCCS---EEE
T ss_pred HHHHHHc-CCcEEEEEecCchHHHHHHHHHHHHHHHcC--CeEEEEEecCCCCc--c---HHHHHHHHHhcCCC---EEE
Confidence 4566665 4689988887654433 6777888899998 6653 223343332 3 33455666667777 888
Q ss_pred EecCchHhhHHHHHHHHhhcCCc
Q 017815 103 ALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~p 125 (365)
..+.+ .+..+++......|+.
T Consensus 212 ~~~~~--~~a~~~~~~~~~~g~~ 232 (375)
T 4evq_A 212 AFFSG--GGALKFIKDYAAANLG 232 (375)
T ss_dssp EECCT--HHHHHHHHHHHHTTCC
T ss_pred EecCc--chHHHHHHHHHHcCCC
Confidence 87665 3566666555556643
No 56
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=73.13 E-value=12 Score=34.73 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=57.3
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
.++++.++ -+++.+++|........+.+.+.+++.| +++....++. ...++...+..+++.++| +|+..
T Consensus 130 ~~~~~~~g-~~~v~ii~d~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~-----~~~d~~~~l~~i~~~~~~---vi~~~ 198 (395)
T 3h6g_A 130 LDLVQFFK-WKTVTVVYDDSTGLIRLQELIKAPSRYN--LRLKIRQLPA-----DTKDAKPLLKEMKRGKEF---HVIFD 198 (395)
T ss_dssp HHHHHHTT-CSEEEEEESSTHHHHHTHHHHTGGGTSS--CEEEEEECCS-----SGGGGHHHHHHHHHTTCC---EEEEE
T ss_pred HHHHHHCC-CeEEEEEEEChhHHHHHHHHHHhhhcCC--ceEEEEEeCC-----CchhHHHHHHHHhhcCCe---EEEEE
Confidence 45566553 5899999987644446777777888888 6654333332 234567778888888888 88877
Q ss_pred cCchHhhHHHHHHHHhhcCC
Q 017815 105 GGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~ 124 (365)
+.+ -|+..++..+...|+
T Consensus 199 ~~~--~~~~~~~~qa~~~gl 216 (395)
T 3h6g_A 199 CSH--EMAAGILKQALAMGM 216 (395)
T ss_dssp SCH--HHHHHHHHHHHHTTC
T ss_pred CCH--HHHHHHHHHHHHccc
Confidence 755 467777765555553
No 57
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=72.39 E-value=30 Score=29.34 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=50.8
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCC-------------CCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-------------NYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e-------------~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
+|++|+.-++....-.-...+.|..+| +++.++...++. ++.+++++ ....+| .|
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~-------~~~~~D---~l 70 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGG--IKVTTASVASDGNLAITCSRGVKLLADAPLVEV-------ADGEYD---VI 70 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTT--CEEEEEECSSTTCCEEECTTSCEEECSEEHHHH-------TTSCCS---EE
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCC--CEEEEEeCCCCCCceeecCCCeEEecCCCHHHC-------CcccCC---EE
Confidence 567777766665543333456677888 787655443331 11122221 112344 88
Q ss_pred EEecCc-hHhh------HHHHHHHHhhcCCcEEEecccc
Q 017815 102 VALGGG-VIGD------MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 102 IaiGGG-sv~D------~ak~vA~~~~~g~p~i~IPTTl 133 (365)
|-.||. ..-+ +..++...+..+.++.+|++..
T Consensus 71 ivpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~ 109 (205)
T 2ab0_A 71 VLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAP 109 (205)
T ss_dssp EECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHH
T ss_pred EECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhH
Confidence 888884 3433 3345555567899999999874
No 58
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=72.29 E-value=22 Score=33.74 Aligned_cols=102 Identities=8% Similarity=0.103 Sum_probs=64.1
Q ss_pred chhhhhc---cCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCC-CCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 25 NCLYYRH---VQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-NYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 25 ~~~l~~~---~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
|.++.-+ ..++++++|+++... ...+++.+.|.+.| +++..+.+++.. ...-.+.+.++++.+...+.+ +
T Consensus 16 pnil~~l~~~~kp~~vv~I~s~~~~-~~~~~l~~~l~~~~--i~~~~~~i~~~~d~~~i~~~~~~l~~~~~~~~~~---v 89 (385)
T 1xmx_A 16 RLVTPLLDHRTVSRHIIFIGDHTQT-VIYQRLSDVLNKRN--ISTDFFEIPAGSNTSAIKSAIRELAETLKARGEE---V 89 (385)
T ss_dssp HHHHHHHSTTCCCCEEEEEECGGGH-HHHHHHHHHHHHTT--CEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTCE---E
T ss_pred hHHHHHhcccCCCCEEEEEECCcHH-HHHHHHHHHHHHcC--CCceEEecCCccCHHHHHHHHHHHHHHhhccCCc---E
Confidence 5555442 247889999988754 57888999999888 777777664431 112233345566666555444 8
Q ss_pred EEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++=+=||+=+-...+..+.-..+.|.+.+.+.
T Consensus 90 ~~N~TGGTK~Mslaay~~~~~~~~~i~Yvd~~ 121 (385)
T 1xmx_A 90 KFNASCGLRHRLLSAYEVFRSYHWPIFVVEPN 121 (385)
T ss_dssp EEECSSSCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred EEEeCCChHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 88888887555544333333467888888654
No 59
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=71.99 E-value=20 Score=33.44 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=59.5
Q ss_pred eecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcc
Q 017815 20 LLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRC 99 (365)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~ 99 (365)
.+....++++.++ -+++.+|+|........+.+.+.+++.| +.+....... .....++...+..+++.+++
T Consensus 117 ~~~a~~~~~~~~g-w~~vaii~d~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~---~~~~~d~~~~l~~ik~~~~~--- 187 (389)
T 3o21_A 117 LKGAILSLLSYYK-WEKFVYLYDTERGFSVLQAIMEAAVQNN--WQVTARSVGN---IKDVQEFRRIIEEMDRRQEK--- 187 (389)
T ss_dssp SHHHHHHHHHHHT-CCEEEEEECSTTCSHHHHHHHHHHHHTT--CEEEEEECTT---CCCTHHHHHHHHHHHTTTCC---
T ss_pred HHHHHHHHHHhCC-CCEEEEEEcCcHHHHHHHHHHHHhhcCC--CeEEEEEecC---CCCcHHHHHHHHHHHhCCCe---
Confidence 3444456666553 5899999977555557788888898888 6654332221 11234688888899988887
Q ss_pred eEEEecCchHhhHHHHHHHHhhcCC
Q 017815 100 TFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 100 ~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+||-.|.+ -+.+.++..+...|+
T Consensus 188 vii~~~~~--~~~~~i~~qa~~~g~ 210 (389)
T 3o21_A 188 RYLIDCEV--ERINTILEQVVILGK 210 (389)
T ss_dssp EEEEESCH--HHHHHHHHHHHHHCS
T ss_pred EEEEECCH--HHHHHHHHHHHHcCc
Confidence 78776654 355555544444443
No 60
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=70.75 E-value=33 Score=30.23 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=53.7
Q ss_pred CceEEEEEc-----cCchHHHHHHHHHHHhhCCCCceEEEEEeCCCC----------CCCCHHHHHHHHHH--------H
Q 017815 34 GKKVLVVTN-----NTVAPLYLDKVTDALTRGNPNVSVENVILPDGE----------NYKNMDTLMKVFDK--------A 90 (365)
Q Consensus 34 ~~~~livtd-----~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e----------~~~~~~~v~~~~~~--------~ 90 (365)
.+|++|+.. ++.+..=.-...+.|.++| +++.++...++. +..+-..+.--.+. +
T Consensus 23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG--~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l 100 (242)
T 3l3b_A 23 ALNSAVILAGCGHMDGSEIREAVLVMLELDRHN--VNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDI 100 (242)
T ss_dssp -CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTT--CEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEG
T ss_pred cCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCC--CEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCCh
Confidence 367877765 5555442223345678888 887665443331 11111112111121 2
Q ss_pred HHcCCCCcceEEEecCchH------------------hhHHHHHHHHhhcCCcEEEecccc
Q 017815 91 IESRLDRRCTFVALGGGVI------------------GDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 91 ~~~~~dr~~~IIaiGGGsv------------------~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.+...+.-|.||--||-.. -++..++...+..|.|+.+|++..
T Consensus 101 ~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~ 161 (242)
T 3l3b_A 101 EQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISP 161 (242)
T ss_dssp GGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHH
T ss_pred HHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 2222223358888888543 246667766778999999999974
No 61
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=70.49 E-value=7.2 Score=40.71 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----hcCCcEEEecccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTV 133 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----~~g~p~i~IPTTl 133 (365)
+...++++.+++.++| .+|.|||--.++.+..++-.. ..++|+|.||-|.
T Consensus 470 ~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTI 523 (787)
T 3o8o_A 470 EDLGTIAYYFQKNKLD---GLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATV 523 (787)
T ss_dssp GCHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCT
T ss_pred hhHHHHHHHHHHhCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCceeeccccc
Confidence 4677889999999999 999999988888887665321 1379999999997
No 62
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=70.30 E-value=4.4 Score=43.12 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh--------------------hcCCcEEEecccc---cc
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTV---MA 135 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------------~~g~p~i~IPTTl---~A 135 (365)
+.+...++++.+++.++| .+|.|||--.++.|..++.-| ..++|+|.||-|. +.
T Consensus 289 ~~e~~~~~~~~L~~~gId---~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~ 365 (989)
T 3opy_A 289 ERWGRLQACYNMVSNGID---ALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMC 365 (989)
T ss_dssp SHHHHHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCT
T ss_pred chhHHHHHHHHHHHcCCC---EEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCC
Confidence 456678899999999999 999999988888887554211 1479999999998 45
Q ss_pred ccccccCCce
Q 017815 136 QVDSSVGGKT 145 (365)
Q Consensus 136 ~~~s~~~~~~ 145 (365)
+||-++|--+
T Consensus 366 gTD~TiGFdT 375 (989)
T 3opy_A 366 GTDSTIGAYS 375 (989)
T ss_dssp TCSCCEEHHH
T ss_pred CCCCCCChhh
Confidence 5555555333
No 63
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=69.93 E-value=6.3 Score=41.89 Aligned_cols=49 Identities=12% Similarity=0.033 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----hcCCcEEEecccc
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTV 133 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----~~g~p~i~IPTTl 133 (365)
...++++.+++.++| .+|.|||--.++.+..++-.. ..++|+|.||-|.
T Consensus 650 ~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTI 702 (941)
T 3opy_B 650 DIGMIAYFFEKYGFD---GLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATI 702 (941)
T ss_dssp CHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCS
T ss_pred hHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccc
Confidence 567889999999999 999999988888887665321 1389999999997
No 64
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=69.62 E-value=8.9 Score=37.72 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh---hcCCcEEEecccc---ccccccccCCceE
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTV---MAQVDSSVGGKTG 146 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~---~~g~p~i~IPTTl---~A~~~s~~~~~~~ 146 (365)
.+++++.+++.++| .+|.|||--.++.|..++-.. ..++|+|.||-|. +.+||-++|--++
T Consensus 178 ~~~i~~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTA 244 (487)
T 2hig_A 178 PKEMVDTLERLGVN---ILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTA 244 (487)
T ss_dssp HHHHHHHHHHHTCS---EEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHH
T ss_pred HHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHH
Confidence 45899999999999 999999999999887765321 2368999999997 3455555554333
No 65
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=68.69 E-value=5.9 Score=29.50 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH--h--hcCCcEEEeccc
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS--Y--LRGVSFIQIPTT 132 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~--~--~~g~p~i~IPTT 132 (365)
-.....++..+|+.+.- -|-|||.|.+-...|.+|.+ | ..|+.++++|.-
T Consensus 13 ~~VAGAIA~~lRe~~~v---eiqAIGa~AvNqAVKAIAIARg~l~~~g~Dl~~~PaF 66 (90)
T 2ek0_A 13 NSVAGAIAAMLRTKGEV---EVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAF 66 (90)
T ss_dssp HHHHHHHHHHHHHHSEE---EEEECSHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCce---EEEEECHHHHHHHHHHHHHHHHhhcccCceEEEeeee
Confidence 35677888889998876 89999999999999999865 2 368999999977
No 66
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=66.66 E-value=11 Score=39.21 Aligned_cols=67 Identities=6% Similarity=0.207 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh--------------------hcCCcEEEecccc---c
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTV---M 134 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------------~~g~p~i~IPTTl---~ 134 (365)
++.+...++++.+++.++| .+|.|||--.++.|..++..| ..++|+|-||-|. +
T Consensus 93 ~~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl 169 (762)
T 3o8l_A 93 REREGRLRAAHNLVKRGIT---NLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDF 169 (762)
T ss_dssp GSHHHHHHHHHHHHHHCCC---EEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCC
T ss_pred cCHHHHHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCC
Confidence 3556788999999999999 999999988888887553211 1379999999998 4
Q ss_pred cccccccCCceEE
Q 017815 135 AQVDSSVGGKTGI 147 (365)
Q Consensus 135 A~~~s~~~~~~~i 147 (365)
.+||-++|--+++
T Consensus 170 ~gTD~TiGfdTA~ 182 (762)
T 3o8l_A 170 CGTDMTIGTDSAL 182 (762)
T ss_dssp SSCSCCBTHHHHH
T ss_pred CCCcCCcCchhHH
Confidence 5566555544433
No 67
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=66.58 E-value=13 Score=33.99 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=54.5
Q ss_pred cchhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
..+++.+. +.+|+.+|++...+.. ..+.+.+.+++.| +++.. ..++.+.. + ....+..+++.++| +|
T Consensus 130 ~~~~l~~~-g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g--~~v~~~~~~~~~~~--d---~~~~~~~l~~~~~d---~v 198 (368)
T 4eyg_A 130 IGDWAAKN-GIKKVATLTSDYAPGNDALAFFKERFTAGG--GEIVEEIKVPLANP--D---FAPFLQRMKDAKPD---AM 198 (368)
T ss_dssp HHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEECSSSC--C---CHHHHHHHHHHCCS---EE
T ss_pred HHHHHHHc-CCCEEEEEecCchHhHHHHHHHHHHHHHcC--CEEEEEEeCCCCCC--c---HHHHHHHHHhcCCC---EE
Confidence 35566665 4689988886654433 5777888899888 66532 22333322 3 34456666777887 88
Q ss_pred EEecCchHhhHHHHHHHHhhcCC
Q 017815 102 VALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 102 IaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+..+.+. +...++......|+
T Consensus 199 ~~~~~~~--~a~~~~~~~~~~g~ 219 (368)
T 4eyg_A 199 FVFVPAG--QGGNFMKQFAERGL 219 (368)
T ss_dssp EEECCTT--CHHHHHHHHHHTTG
T ss_pred EEeccch--HHHHHHHHHHHcCC
Confidence 8866655 66666655544443
No 68
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=66.50 E-value=25 Score=29.40 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHh--hHHHHH
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
+.+.-...+.+.|++.| +++..+ ++++ +.+.+.+.++.+.+. ++| +||--||=++. |.++-+
T Consensus 37 i~Dsn~~~L~~~l~~~G--~~v~~~~iv~D-----d~~~I~~al~~a~~~~~~D---lVittGG~s~g~~D~t~ea 102 (178)
T 2pjk_A 37 IVDESGDIIKQLLIENG--HKIIGYSLVPD-----DKIKILKAFTDALSIDEVD---VIISTGGTGYSPTDITVET 102 (178)
T ss_dssp CCCHHHHHHHHHHHHTT--CEEEEEEEECS-----CHHHHHHHHHHHHTCTTCC---EEEEESCCSSSTTCCHHHH
T ss_pred EeehHHHHHHHHHHHCC--CEEEEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCCCCCCCcchHHH
Confidence 44556777888899999 666443 3443 456777777666554 467 99999997765 565543
No 69
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=66.42 E-value=31 Score=33.43 Aligned_cols=101 Identities=11% Similarity=-0.007 Sum_probs=60.6
Q ss_pred ecccchhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHH-HHHHHcCCCC
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVF-DKAIESRLDR 97 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~-~~~~~~~~dr 97 (365)
+....++++.++ -+++.+|++..-+ +...+.+++.+++.| +.+... .++. ......+...+ +.+++.+++
T Consensus 173 ~~a~~~ll~~fg-w~~V~ii~~dd~~G~~~~~~~~~~~~~~G--i~v~~~~~i~~---~~~~~d~~~~l~~~i~~s~a~- 245 (479)
T 3sm9_A 173 AKAMAEILRFFN-WTYVSTVASEGDYGETGIEAFEQEARLRN--ISIATAEKVGR---SNIRKSYDSVIRELLQKPNAR- 245 (479)
T ss_dssp HHHHHHHHHHTT-CCEEEEEEESSHHHHHHHHHHHHHHHTTT--CEEEEEEEECC-----CHHHHHHHHHHHHTCTTCC-
T ss_pred HHHHHHHHHHCC-CeEEEEEEecchhhHHHHHHHHHHHHHCC--ceEEEEEEcCC---CCChHHHHHHHHHHHhcCCCe-
Confidence 333456666654 5788887765544 347888889999988 665322 2321 22345666666 555666666
Q ss_pred cceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+||..|.+ -|+..++-.+...|+..+-|-|.
T Consensus 246 --vIi~~~~~--~~~~~l~~~~~~~g~~~~wI~s~ 276 (479)
T 3sm9_A 246 --VVVLFMRS--DDSRELIAAASRANASFTWVASD 276 (479)
T ss_dssp --EEEEECCH--HHHHHHHHHHHHTTCCCEEEECT
T ss_pred --EEEEEcCh--HHHHHHHHHHHHhCCEEEEEEec
Confidence 88888865 35566555555566654455444
No 70
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=66.41 E-value=4.1 Score=42.41 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh----hcCCcEEEecccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTV 133 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~----~~g~p~i~IPTTl 133 (365)
+...++++.+++.++| .+|.|||--.++.+..++-.. ..++|+|.||-|.
T Consensus 471 ~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTI 524 (766)
T 3o8o_B 471 ADLGMIAYYFQKYEFD---GLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATL 524 (766)
T ss_dssp GCHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCT
T ss_pred chHHHHHHHHHHhCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeecccc
Confidence 4577899999999999 999999988888877664211 1489999999997
No 71
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=66.26 E-value=61 Score=29.71 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=50.4
Q ss_pred chhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+.+ .+|+.+|++...+. ...+.+++.+++.| +++... .++. .+........++.+++.++| +|+
T Consensus 132 ~~~l~~~g-~~~ia~i~~~~~~~~~~~~~~~~~l~~~G--~~v~~~~~~~~---~~~~~d~~~~~~~l~~~~pd---aI~ 202 (385)
T 1pea_A 132 AAYLIRHY-GERVVFIGSDYIYPRESNHVMRHLYRQHG--GTVLEEIYIPL---YPSDDDLQRAVERIYQARAD---VVF 202 (385)
T ss_dssp HHHHHTTT-CSEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEECS---SCCHHHHHHHHHHHHHHTCS---EEE
T ss_pred HHHHHHcc-CcEEEEEeCCChHHHHHHHHHHHHHHHcC--CEEEEEEeecC---CCCcchHHHHHHHHHHCCCC---EEE
Confidence 45555554 68999998764332 25666788888888 665321 2221 12456677777887777777 898
Q ss_pred EecCc-hHhhHHHH
Q 017815 103 ALGGG-VIGDMCGY 115 (365)
Q Consensus 103 aiGGG-sv~D~ak~ 115 (365)
..+.+ ...-+.+.
T Consensus 203 ~~~~~~~a~~~~~~ 216 (385)
T 1pea_A 203 STVVGTGTAELYRA 216 (385)
T ss_dssp EECCTHHHHHHHHH
T ss_pred EecccccHHHHHHH
Confidence 87643 33444433
No 72
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=65.48 E-value=6.9 Score=40.77 Aligned_cols=66 Identities=12% Similarity=0.245 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh--------------------hcCCcEEEecccc---cc
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTV---MA 135 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------------~~g~p~i~IPTTl---~A 135 (365)
+.+...++++.+++.++| .+|.|||--.++.|..++.-| ..++|+|.||-|. +.
T Consensus 83 ~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~ 159 (766)
T 3o8o_B 83 KREGRLLGAQHLIEAGVD---ALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMS 159 (766)
T ss_dssp SHHHHHHHHHHHHHHTCC---EEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCT
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCC
Confidence 455677889999999999 999999988888876443111 1479999999998 55
Q ss_pred ccccccCCceEE
Q 017815 136 QVDSSVGGKTGI 147 (365)
Q Consensus 136 ~~~s~~~~~~~i 147 (365)
+||-++|--+++
T Consensus 160 gTD~TiGfdTA~ 171 (766)
T 3o8o_B 160 TTDATIGAYSAL 171 (766)
T ss_dssp TCSCCBTHHHHH
T ss_pred CCCCCCChhHHH
Confidence 666665544443
No 73
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=64.36 E-value=19 Score=30.36 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=47.3
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
+++||.|... ..+.+...|...| +++. .+. +..++.+.+.+..+| +|| +.+..-+++++.
T Consensus 2 ~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~---------~~~~al~~l~~~~~d---lvi-lp~~~g~~~~~~ 61 (223)
T 2hqr_A 2 RVLLIEKNSV---LGGEIEKGLNVKG--FMAD--VTE---------SLEDGEYLMDIRNYD---LVM-VSDKNALSFVSR 61 (223)
T ss_dssp CEEEECSCHH---HHHHHHHHHGGGT--CCEE--EES---------SHHHHHHHHTTSCCS---EEE-ECCTTHHHHHHH
T ss_pred EEEEEcCCHH---HHHHHHHHHHHCC--cEEE--EEC---------CHHHHHHHHhcCCCC---EEE-eCCCCHHHHHHH
Confidence 4677777654 3455566677667 6543 222 234445555666666 999 998888999988
Q ss_pred HHHHhhcCCcEEEe
Q 017815 116 AAASYLRGVSFIQI 129 (365)
Q Consensus 116 vA~~~~~g~p~i~I 129 (365)
+... ...+|++.+
T Consensus 62 lr~~-~~~~~ii~l 74 (223)
T 2hqr_A 62 IKEK-HSSIVVLVS 74 (223)
T ss_dssp HHHH-CTTSEEEEE
T ss_pred HHhC-CCCCcEEEE
Confidence 8544 237787776
No 74
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=63.99 E-value=22 Score=32.92 Aligned_cols=97 Identities=12% Similarity=-0.019 Sum_probs=46.4
Q ss_pred eecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcc
Q 017815 20 LLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRC 99 (365)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~ 99 (365)
.+....++++.++ -+++.+|+|........+.+.+.+++.| +++.........+.+...++...+..+++.+++
T Consensus 108 ~~~a~~~~~~~~g-w~~vaii~d~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~--- 181 (376)
T 3hsy_A 108 LKGALLSLIEYYQ-WDKFAYLYDSDRGLSTLQAVLDSAAEKK--WQVTAINVGNINNDKKDETYRSLFQDLELKKER--- 181 (376)
T ss_dssp CHHHHHHHHHHTT-CCEEEEEECSTTCSHHHHHHHHHHHHHT--CEEEEEECTTCC--------------------C---
T ss_pred HHHHHHHHHHhcC-CCEEEEEEeCchhHHHHHHHHHHhhhcC--CeEEEEEeccccccccchhHHHHHHHHhhCCCe---
Confidence 3444456666553 5899999976554557788888888877 555332221111112345677778888887777
Q ss_pred eEEEecCchHhhHHHHHHHHhhcCC
Q 017815 100 TFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 100 ~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+||-.|.+ -+.+.++..+...|+
T Consensus 182 vii~~~~~--~~~~~~~~qa~~~g~ 204 (376)
T 3hsy_A 182 RVILDCER--DKVNDIVDQVITIGK 204 (376)
T ss_dssp EEEEESCH--HHHHHHHHHHHHHTS
T ss_pred EEEEECCH--HHHHHHHHHHHHccc
Confidence 88877654 455555544444454
No 75
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=63.19 E-value=49 Score=32.48 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=59.1
Q ss_pred cchhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHH-cCCCCcce
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIE-SRLDRRCT 100 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~ 100 (365)
..++++.++ -+++.+|++...+ ....+.+.+.+++.| +.+... .++. ..+...+.+.+..+++ .+++ +
T Consensus 177 ~~~ll~~fg-w~~V~ii~~d~~~g~~~~~~~~~~~~~~g--i~v~~~~~~~~---~~~~~~~~~~l~~i~~~s~a~---v 247 (555)
T 2e4u_A 177 MAEILRFFN-WTYVSTVASEGDYGETGIEAFEQEARLRN--ICIATAEKVGR---SNIRKSYDSVIRELLQKPNAR---V 247 (555)
T ss_dssp HHHHHHHTT-CCEEEEEEESSTTHHHHHHHHHHHHHTTT--CEEEEEEEECT---TCCHHHHHHHHHHHHTCTTCC---E
T ss_pred HHHHHHHcC-CeEEEEEEeeChHHHHHHHHHHHHHHHCC--ccEEEEEEeCC---CCChHHHHHHHHHHhccCCCC---E
Confidence 345666553 4777777765544 447788888999888 665322 2331 1245667778888764 5666 8
Q ss_pred EEEecCchHhhHHHHHHHHhhcCCcEEEecc
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPT 131 (365)
||..|.+. |+..++..+...|+..+-|-|
T Consensus 248 Ii~~~~~~--~~~~~~~~~~~~g~~~~~i~s 276 (555)
T 2e4u_A 248 VVLFMRSD--DSRELIAAANRVNASFTWVAS 276 (555)
T ss_dssp EEEECCHH--HHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEEcCHH--HHHHHHHHHHHhcCCeEEEEe
Confidence 88887554 556665444455555444433
No 76
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=62.81 E-value=37 Score=25.25 Aligned_cols=77 Identities=9% Similarity=0.060 Sum_probs=47.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+.+.|.+.| +++. .+. +..++.+.+.+..+| +||. +.+..-.+
T Consensus 4 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~---------~~~~a~~~l~~~~~d---lii~D~~l~~~~g~~ 64 (127)
T 3i42_A 4 QQALIVEDYQA---AAETFKELLEMLG--FQAD--YVM---------SGTDALHAMSTRGYD---AVFIDLNLPDTSGLA 64 (127)
T ss_dssp EEEEEECSCHH---HHHHHHHHHHHTT--EEEE--EES---------SHHHHHHHHHHSCCS---EEEEESBCSSSBHHH
T ss_pred ceEEEEcCCHH---HHHHHHHHHHHcC--CCEE--EEC---------CHHHHHHHHHhcCCC---EEEEeCCCCCCCHHH
Confidence 46777777654 3455666677777 5542 232 234555566777777 6664 46777888
Q ss_pred HHHHHHHHh-hcCCcEEEec
Q 017815 112 MCGYAAASY-LRGVSFIQIP 130 (365)
Q Consensus 112 ~ak~vA~~~-~~g~p~i~IP 130 (365)
+.+.+.... ...+|++.+-
T Consensus 65 ~~~~l~~~~~~~~~~ii~~s 84 (127)
T 3i42_A 65 LVKQLRALPMEKTSKFVAVS 84 (127)
T ss_dssp HHHHHHHSCCSSCCEEEEEE
T ss_pred HHHHHHhhhccCCCCEEEEE
Confidence 888774321 3567777663
No 77
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=62.24 E-value=43 Score=24.75 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=44.9
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
+|++||-|... ..+.+...|...| +++. .+. + ..++.+.+.+..+| +||- +.|..-++
T Consensus 3 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~~~~~~~d---lii~D~~~p~~~g~~ 63 (120)
T 3f6p_A 3 KKILVVDDEKP---IADILEFNLRKEG--YEVH--CAH------D---GNEAVEMVEELQPD---LILLDIMLPNKDGVE 63 (120)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHTTCCS---EEEEETTSTTTHHHH
T ss_pred CeEEEEECCHH---HHHHHHHHHHhCC--EEEE--EeC------C---HHHHHHHHhhCCCC---EEEEeCCCCCCCHHH
Confidence 57888888754 3445556677777 6543 222 2 33445556666777 6664 46777778
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+.+.+.. ...+|++.+
T Consensus 64 ~~~~lr~--~~~~~ii~~ 79 (120)
T 3f6p_A 64 VCREVRK--KYDMPIIML 79 (120)
T ss_dssp HHHHHHT--TCCSCEEEE
T ss_pred HHHHHHh--cCCCCEEEE
Confidence 8876632 345676665
No 78
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=62.10 E-value=68 Score=29.08 Aligned_cols=87 Identities=8% Similarity=-0.031 Sum_probs=58.4
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
.++++.++ -+++.+|++...+....+.+.+.+.+.| +.+...... ..+.......+..++..+.+ +||..
T Consensus 122 ~~l~~~~~-w~~vaii~~~d~~~~~~~~~~~~~~~~g--~~v~~~~~~----~~~~~d~~~~l~~i~~~~~~---vIv~~ 191 (389)
T 4gpa_A 122 LSLLDHYE-WNCFVFLYDTDRGYSILQAIMEKAGQNG--WHVSAICVE----NFNDVSYRQLLEELDRRQEK---KFVID 191 (389)
T ss_dssp HHHHHHTT-CCEEEEEECSTTCSHHHHHHHHHHHTTT--CEEEEEECT----TCCHHHHHHHHHHHHHHTCC---EEEEE
T ss_pred HHHHHHcC-CcEEEEEEecchhhHHHHHHHHHHHhcC--ceEEEEeec----CCcchhHHHHHHHhhccCCc---EEEEE
Confidence 55666664 5889999987765555666777888888 665433322 34667888888999988888 78777
Q ss_pred cCchHhhHHHHHHHHhhcC
Q 017815 105 GGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g 123 (365)
+.. -+...++..+...|
T Consensus 192 ~~~--~~~~~il~~a~~~g 208 (389)
T 4gpa_A 192 CEI--ERLQNILEQIVSVG 208 (389)
T ss_dssp CCH--HHHHHHHHHHHHHT
T ss_pred ech--hHHHHHHHHHHHhC
Confidence 654 35555554444444
No 79
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=61.51 E-value=57 Score=29.54 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=52.8
Q ss_pred chhhhhccCCceEEEEEc-cCch-HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTN-NTVA-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd-~~~~-~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+..+.+|+.+|++ ..-+ ....+.+.+.+++.| +++....++.+.. + +...+..+++.++| +|+
T Consensus 140 ~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G--~~v~~~~~~~~~~--d---~~~~~~~l~~~~~d---~v~ 209 (366)
T 3td9_A 140 AVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELG--GQVKRVFFRSGDQ--D---FSAQLSVAMSFNPD---AIY 209 (366)
T ss_dssp HHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTT--CEEEEEEECTTCC--C---CHHHHHHHHHTCCS---EEE
T ss_pred HHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCC--CEEEEEEeCCCCc--c---HHHHHHHHHhcCCC---EEE
Confidence 445533223689999974 2323 336677888899988 6654333443322 3 33456666777777 888
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
..+.+ .+...++......|+
T Consensus 210 ~~~~~--~~a~~~~~~~~~~g~ 229 (366)
T 3td9_A 210 ITGYY--PEIALISRQARQLGF 229 (366)
T ss_dssp ECSCH--HHHHHHHHHHHHTTC
T ss_pred Eccch--hHHHHHHHHHHHcCC
Confidence 86654 466666665555554
No 80
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=61.51 E-value=55 Score=29.35 Aligned_cols=88 Identities=8% Similarity=-0.021 Sum_probs=53.1
Q ss_pred cchhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEE-EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~-~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
..+++.++ +.+|+.+|++...+.. ..+.+++.|++.| +++. ...++.+.. + ....+..+++.++| .|
T Consensus 126 ~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g--~~v~~~~~~~~~~~--~---~~~~~~~l~~~~~d---av 194 (362)
T 3snr_A 126 LYEHMKKN-NVKTVGYIGYSDSYGDLWFNDLKKQGEAMG--LKIVGEERFARPDT--S---VAGQALKLVAANPD---AI 194 (362)
T ss_dssp HHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEECTTCS--C---CHHHHHHHHHHCCS---EE
T ss_pred HHHHHHhc-CCCEEEEEecCchHHHHHHHHHHHHHHHcC--CEEEEEeecCCCCC--C---HHHHHHHHHhcCCC---EE
Confidence 35566665 3689988877654433 6777888899988 6643 223443322 3 33445566667777 88
Q ss_pred EEecCchHhhHHHHHHHHhhcCC
Q 017815 102 VALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 102 IaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+..+.+ .+..+++......|+
T Consensus 195 ~~~~~~--~~a~~~~~~~~~~g~ 215 (362)
T 3snr_A 195 LVGASG--TAAALPQTTLRERGY 215 (362)
T ss_dssp EEECCH--HHHHHHHHHHHHTTC
T ss_pred EEecCc--chHHHHHHHHHHcCC
Confidence 887633 345565554445554
No 81
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=61.37 E-value=27 Score=31.58 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=45.9
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH------------HHcCCCCcceEE
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA------------IESRLDRRCTFV 102 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~------------~~~~~dr~~~II 102 (365)
+++||..+..-...+.+++.+.|.+.. ++. ++...+ .+..+.+.+.++.. .+ -...+|++|
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~~~~---~i~-vv~G~~--~~~~~~l~~~~~~~~~v~v~~~~~~m~~-~m~~aDlvI 230 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELPKTK---IIS-IATSSS--NPNLKKLQKFAKLHNNIRLFIDHENIAK-LMNESNKLI 230 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSCTTS---CEE-EEECTT--CTTHHHHHHHHHTCSSEEEEESCSCHHH-HHHTEEEEE
T ss_pred CeEEEEECCCchhhHHHHHHHHhhcCC---CEE-EEECCC--chHHHHHHHHHhhCCCEEEEeCHHHHHH-HHHHCCEEE
Confidence 355555554322235666777775532 232 233333 34556665543210 00 001245999
Q ss_pred EecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 103 ALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+=||+++..++ ..|+|.+.||+.
T Consensus 231 ~~gG~T~~E~~-------~~g~P~i~ip~~ 253 (282)
T 3hbm_A 231 ISASSLVNEAL-------LLKANFKAICYV 253 (282)
T ss_dssp EESSHHHHHHH-------HTTCCEEEECCS
T ss_pred ECCcHHHHHHH-------HcCCCEEEEeCC
Confidence 98887776665 369999999975
No 82
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=61.27 E-value=30 Score=31.91 Aligned_cols=87 Identities=8% Similarity=-0.014 Sum_probs=53.8
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhC--CCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRG--NPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~--g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
.+++.++ +.+|+.+|++...+.. ..+.+.+.+++. | +++.... ++.+. .++...+..+++.++| +
T Consensus 134 ~~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g--~~vv~~~~~~~~~-----~d~~~~~~~i~~~~~d---~ 202 (387)
T 3i45_A 134 AAEAAKL-PITRWATIAPNYEYGQSAVARFKELLLAARPE--VTFVAEQWPALYK-----LDAGPTVQALQQAEPE---G 202 (387)
T ss_dssp HHHHTTS-SCCEEEEECCSSHHHHHHHHHHHHHHHHHCTT--CEEEEEECCCTTC-----CCHHHHHHHHHHTCCS---E
T ss_pred HHHHHHc-CCCeEEEEeCCchHhHHHHHHHHHHHHHhCCC--cEEEeeecCCCCC-----cCHHHHHHHHHhCCCC---E
Confidence 4555555 3689999987654443 677778888876 6 5543222 22221 2455666777888887 8
Q ss_pred EEEecCchHhhHHHHHHHHhhcCC
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
|+..+.+. |++.++..+...|+
T Consensus 203 v~~~~~~~--~~~~~~~~~~~~g~ 224 (387)
T 3i45_A 203 LFNVLFGA--DLPKFVREGRVRGL 224 (387)
T ss_dssp EEECCCTT--HHHHHHHHHHHHTS
T ss_pred EEEcCccH--HHHHHHHHHHHcCC
Confidence 88776554 56666655544554
No 83
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=60.81 E-value=39 Score=30.67 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=54.0
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEE-EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~-~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.++ +.+|+.+|++...+.. ..+.+.+.+++.| +++. ...++.+.. + ....+..+++.++| +|+
T Consensus 133 ~~~l~~~-g~~~iaii~~~~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~~~~~--d---~~~~~~~l~~~~~d---~v~ 201 (364)
T 3lop_A 133 ITALVTI-GVTRIGVLYQEDALGKEAITGVERTLKAHA--LAITAMASYPRNTA--N---VGPAVDKLLAADVQ---AIF 201 (364)
T ss_dssp HHHHHHT-TCCCEEEEEETTHHHHHHHHHHHHHHHTTT--CCCSEEEEECTTSC--C---CHHHHHHHHHSCCS---EEE
T ss_pred HHHHHHc-CCceEEEEEeCchhhHHHHHHHHHHHHHcC--CcEEEEEEecCCCc--c---HHHHHHHHHhCCCC---EEE
Confidence 5566655 3689999988664433 6777888899888 5542 223343322 3 34556667777877 888
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
..+.+ .++++++......|+
T Consensus 202 ~~~~~--~~a~~~~~~~~~~g~ 221 (364)
T 3lop_A 202 LGATA--EPAAQFVRQYRARGG 221 (364)
T ss_dssp EESCH--HHHHHHHHHHHHTTC
T ss_pred EecCc--HHHHHHHHHHHHcCC
Confidence 87754 356666655545554
No 84
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=60.61 E-value=39 Score=28.94 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=51.4
Q ss_pred CceEEEEEccCc---hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 34 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~---~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
++|+++|.-... ++.+.+.+.+.|++.| +++..+.+. . .+.++..+ .+.+ +| .|+ +|||...
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG--~~v~~~~i~---~-~~~~~~~~---~l~~--ad---~I~-l~GG~~~ 91 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLG--LLVEELDIA---T-ESLGEITT---KLRK--ND---FIY-VTGGNTF 91 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTT--CEEEECCTT---T-SCHHHHHH---HHHH--SS---EEE-ECCSCHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcC--CeEEEEEec---C-CChHHHHH---HHHh--CC---EEE-ECCCCHH
Confidence 678888864432 2347888999999999 665433221 1 23344433 3332 45 555 7889988
Q ss_pred hHHHHHHHH---------hhcCCcEEEecc
Q 017815 111 DMCGYAAAS---------YLRGVSFIQIPT 131 (365)
Q Consensus 111 D~ak~vA~~---------~~~g~p~i~IPT 131 (365)
.+.+..... +.+|.|++-+.-
T Consensus 92 ~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 92 FLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred HHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 888776432 346888887643
No 85
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=60.02 E-value=31 Score=31.55 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=53.7
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+. +.+|+.+|++...+.. ..+.+.+.+++.| +++.. ..++.+.. + +...+..+++.++| +|+
T Consensus 132 ~~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~~~~~--d---~~~~l~~i~~~~~d---~v~ 200 (375)
T 3i09_A 132 GSAVVKQ-GGKTWFFLTADYAFGKALEKNTADVVKANG--GKVLGEVRHPLSAS--D---FSSFLLQAQSSKAQ---ILG 200 (375)
T ss_dssp HHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEECTTCS--C---CHHHHHHHHHTCCS---EEE
T ss_pred HHHHHHc-CCceEEEEecccHHHHHHHHHHHHHHHHcC--CEEeeeeeCCCCCc--c---HHHHHHHHHhCCCC---EEE
Confidence 4556555 4689999987665443 6778888899988 66532 23343332 3 34456667777877 887
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
..+.+ -|...++......|+
T Consensus 201 ~~~~~--~~~~~~~~~~~~~g~ 220 (375)
T 3i09_A 201 LANAG--GDTVNAIKAAKEFGI 220 (375)
T ss_dssp EECCH--HHHHHHHHHHHHTTG
T ss_pred EecCc--hhHHHHHHHHHHcCC
Confidence 77655 345555544444443
No 86
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=59.87 E-value=26 Score=32.77 Aligned_cols=81 Identities=9% Similarity=-0.016 Sum_probs=50.9
Q ss_pred CceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEE-eCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 34 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~-~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+|+.+|++...+.. ..+.+.+.+++.| +++.... ++.+. .++...+..+++.++| +|+..|- ..-|
T Consensus 164 ~~~vail~~~~~~g~~~~~~~~~~~~~~g--~~vv~~~~~~~~~-----~d~~~~l~~i~~~~~d---~v~~~~~-~~~~ 232 (419)
T 3h5l_A 164 NNKIAIITGPGIYSVNIANAIRDGAGEYG--YDVSLFETVAIPV-----SDWGPTLAKLRADPPA---VIVVTHF-YPQD 232 (419)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHGGGGT--CEEEEEEECCSSC-----SCCHHHHHHHHHSCCS---EEEECCC-CHHH
T ss_pred CCEEEEEEcCcchhHHHHHHHHHHHHHcC--CeEEEEecCCCCC-----ccHHHHHHHHHhcCCC---EEEEccc-cCch
Confidence 589999998876544 7788888898888 6654322 33222 3455667778888888 7666542 2234
Q ss_pred HHHHHHHHhhcCCc
Q 017815 112 MCGYAAASYLRGVS 125 (365)
Q Consensus 112 ~ak~vA~~~~~g~p 125 (365)
.+.++......|.+
T Consensus 233 ~~~~~~~~~~~g~~ 246 (419)
T 3h5l_A 233 QALFMNQFMTDPTN 246 (419)
T ss_dssp HHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHcCCC
Confidence 55555444445553
No 87
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=59.78 E-value=18 Score=34.01 Aligned_cols=90 Identities=9% Similarity=-0.027 Sum_probs=57.3
Q ss_pred eecccchhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCc
Q 017815 20 LLISNNCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRR 98 (365)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~ 98 (365)
.+....++++.++ .+++.+|++...+- ...+.+.+.+++.| +++....... ++ ....+..+++.+++
T Consensus 141 ~~~~~~~~~~~~g-~~~v~ii~~~~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~----~d---~~~~l~~i~~~~~~-- 208 (433)
T 4f11_A 141 VNPAILKLLKHYQ-WKRVGTLTQDVQRFSEVRNDLTGVLYGED--IEISDTESFS----ND---PCTSVKKLKGNDVR-- 208 (433)
T ss_dssp HHHHHHHHHHHTT-CCEEEEEEESSHHHHHHHHHHHHHSSSSS--CEEEEEEEES----SC---CHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHcC-CcEEEEEEecchhhHHHHHHHHHHHHHcC--ceEEEEeccC----cC---HHHHHHHHhhCCCe--
Confidence 3344456666653 68899988876543 37788888888888 6654322111 12 34566677788887
Q ss_pred ceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+||..+.+ -|+..++..+...|+
T Consensus 209 -vii~~~~~--~~~~~~~~~a~~~g~ 231 (433)
T 4f11_A 209 -IILGQFDQ--NMAAKVFCCAYEENM 231 (433)
T ss_dssp -EEEEECCH--HHHHHHHHHHHHTTC
T ss_pred -EEEEeCcH--HHHHHHHHHHHHcCC
Confidence 88887755 477777766555554
No 88
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=59.59 E-value=11 Score=35.11 Aligned_cols=93 Identities=10% Similarity=-0.025 Sum_probs=60.0
Q ss_pred eecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcc
Q 017815 20 LLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRC 99 (365)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~ 99 (365)
.+....++++.++ -+++.+|+|........+.+.+.+++.| +.+....+. ..+..++...+..+++.+++
T Consensus 115 ~~~a~~~~~~~~g-~~~v~ii~d~~~g~~~~~~~~~~~~~~g--~~v~~~~~~----~~~~~d~~~~l~~ik~~~~~--- 184 (384)
T 3saj_A 115 LQEALISIIDHYK-WQTFVYIYDADRGLSVLQRVLDTAAEKN--WQVTAVNIL----TTTEEGYRMLFQDLEKKKER--- 184 (384)
T ss_dssp CHHHHHHHHHHTT-CCEEEEEECSTTCSHHHHHHHHHHHHHT--CEEEEEEGG----GCCHHHHHHTTTTCCSCSEE---
T ss_pred HHHHHHHHHHHCC-CcEEEEEEeCchhHHHHHHHHHHhhhcC--ceEEEEEec----cCCchhHHHHHHHHhccCCc---
Confidence 3444466666653 5899999987555557888888898888 665433321 23455677777777666666
Q ss_pred eEEEecCchHhhHHHHHHHHhhcCC
Q 017815 100 TFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 100 ~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+||..|.+ -|++.++..+...|+
T Consensus 185 vii~~~~~--~~~~~~~~qa~~~g~ 207 (384)
T 3saj_A 185 LVVVDCES--ERLNAILGQIVKLEK 207 (384)
T ss_dssp EEEEECCG--GGHHHHHHHHHHTCC
T ss_pred EEEEEcCH--HHHHHHHHHHHHcCC
Confidence 88887755 466666655555554
No 89
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=58.84 E-value=73 Score=27.89 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=54.2
Q ss_pred CceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 34 GKKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
++++.+|.... .+..+.+-+.+.+++.| +++.++ .. . +.+.+.-.+.++.+...++| .||-.+.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~-~~-~--~~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALN--VTVEYR-GA-A--QYDIQEQITVLEQAIAKNPA---GIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHT--CEEEEE-EC-S--SSCHHHHHHHHHHHHHHCCS---EEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcC--CEEEEe-CC-C--cCCHHHHHHHHHHHHHhCCC---EEEEcCCCHHH
Confidence 45666666432 23346677777888888 665432 22 2 23566777778888888998 88877754331
Q ss_pred hHHHHHHHHhhcCCcEEEeccc
Q 017815 111 DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~IPTT 132 (365)
....+......|+|+|.+-..
T Consensus 75 -~~~~~~~~~~~~iPvV~~~~~ 95 (305)
T 3g1w_A 75 -LTDTINKAVDAGIPIVLFDSG 95 (305)
T ss_dssp -THHHHHHHHHTTCCEEEESSC
T ss_pred -HHHHHHHHHHCCCcEEEECCC
Confidence 112222234579999998766
No 90
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=58.81 E-value=48 Score=25.04 Aligned_cols=79 Identities=6% Similarity=0.139 Sum_probs=48.9
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|... ..+.+.+.|.+.| +++. .+. +..++.+.+.+..+| +||. +.+..-.
T Consensus 6 ~~~iLivdd~~~---~~~~l~~~l~~~g--~~v~--~~~---------~~~~a~~~l~~~~~d---lvi~d~~l~~~~g~ 66 (140)
T 3grc_A 6 RPRILICEDDPD---IARLLNLMLEKGG--FDSD--MVH---------SAAQALEQVARRPYA---AMTVDLNLPDQDGV 66 (140)
T ss_dssp CSEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EEC---------SHHHHHHHHHHSCCS---EEEECSCCSSSCHH
T ss_pred CCCEEEEcCCHH---HHHHHHHHHHHCC--CeEE--EEC---------CHHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 457888877654 3455566677777 6542 222 234555566777777 6665 4677778
Q ss_pred hHHHHHHHH-hhcCCcEEEecc
Q 017815 111 DMCGYAAAS-YLRGVSFIQIPT 131 (365)
Q Consensus 111 D~ak~vA~~-~~~g~p~i~IPT 131 (365)
++.+.+... ....+|++.+-.
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 67 SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHhCcccCCCCEEEEec
Confidence 888776431 235678887743
No 91
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=58.44 E-value=54 Score=27.09 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHh--hHHHHH
Q 017815 46 APLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
.+.-...+.+.|.+.| +++..+ ++++ +.+.+.+.++.+.+. ++| +||--||=++. |+++-+
T Consensus 26 ~D~n~~~l~~~L~~~G--~~v~~~~iv~D-----d~~~i~~~l~~a~~~~~~D---lVittGG~g~~~~D~t~ea 90 (172)
T 1mkz_A 26 DDTSGHYLRDSAQEAG--HHVVDKAIVKE-----NRYAIRAQVSAWIASDDVQ---VVLITGGTGLTEGDQAPEA 90 (172)
T ss_dssp GCHHHHHHHHHHHHTT--CEEEEEEEECS-----CHHHHHHHHHHHHHSSSCC---EEEEESCCSSSTTCCHHHH
T ss_pred cCccHHHHHHHHHHCC--CeEeEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEeCCCCCCCCCCCHHHH
Confidence 3446677888899989 666433 4443 557777777776664 567 99999998765 666544
No 92
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=58.43 E-value=20 Score=32.84 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=54.8
Q ss_pred ecccchhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEE-EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCc
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRR 98 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~-~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~ 98 (365)
+....+++.++ +.+|+.+|++...+.. ..+.+.+.+++.| +++. ...++.+.. + ....+..+++.++|
T Consensus 147 ~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g--~~v~~~~~~~~~~~--d---~~~~~~~~~~~~~d-- 216 (386)
T 3sg0_A 147 AEAIGKYIAKT-GAKKVGYIGFSDAYGEGYYKVLAAAAPKLG--FELTTHEVYARSDA--S---VTGQVLKIIATKPD-- 216 (386)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHHT--CEECCCEEECTTCS--C---CHHHHHHHHHTCCS--
T ss_pred HHHHHHHHHhc-CCCEEEEEecCchHHHHHHHHHHHHHHHcC--CEEEEEEeeCCCCC--c---HHHHHHHHHhcCCC--
Confidence 33335566665 3689988886654433 6777888888888 6542 122333322 3 34455666777777
Q ss_pred ceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
.|+..+.+. +..+++......|+.
T Consensus 217 -av~~~~~~~--~a~~~~~~~~~~g~~ 240 (386)
T 3sg0_A 217 -AVFIASAGT--PAVLPQKALRERGFK 240 (386)
T ss_dssp -EEEEECCSG--GGHHHHHHHHHTTCC
T ss_pred -EEEEecCcc--hHHHHHHHHHHcCCC
Confidence 888877643 455555444455654
No 93
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=58.09 E-value=60 Score=29.23 Aligned_cols=91 Identities=15% Similarity=0.030 Sum_probs=54.0
Q ss_pred ecccchhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCc
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRR 98 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~ 98 (365)
+....+++.+. +.+|+.+|+....+. ...+.+.+.|++.| +++... .++.+.. + ....++.+++.++|
T Consensus 127 ~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g--~~v~~~~~~~~~~~--~---~~~~~~~l~~~~~d-- 196 (358)
T 3hut_A 127 GPNNAAWMIGD-GFTSVAVIGVTTDWGLSSAQAFRKAFELRG--GAVVVNEEVPPGNR--R---FDDVIDEIEDEAPQ-- 196 (358)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEECTTCC--C---CHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHc-CCCEEEEEecCcHHHHHHHHHHHHHHHHcC--CEEEEEEecCCCCc--c---HHHHHHHHHhcCCC--
Confidence 33335565555 468999888655443 36777888899988 665322 3343322 3 33455666677777
Q ss_pred ceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 99 CTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 99 ~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.|+..+.+ -++.+++......|+
T Consensus 197 -~i~~~~~~--~~a~~~~~~~~~~g~ 219 (358)
T 3hut_A 197 -AIYLAMAY--EDAAPFLRALRARGS 219 (358)
T ss_dssp -EEEEESCH--HHHHHHHHHHHHTTC
T ss_pred -EEEEccCc--hHHHHHHHHHHHcCC
Confidence 89888765 244455544444554
No 94
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=56.89 E-value=31 Score=29.16 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 46 APLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+.-...+.+.|++.| +++..+ ++++ +.+.+.+.++.+.+.++| +||--||=++.+
T Consensus 47 ~Dsn~~~L~~~L~~~G--~~v~~~~iv~D-----d~~~I~~al~~a~~~~~D---lVIttGGts~g~ 103 (185)
T 3rfq_A 47 EDHSGPLVTELLTEAG--FVVDGVVAVEA-----DEVDIRNALNTAVIGGVD---LVVSVGGTGVTP 103 (185)
T ss_dssp CCSHHHHHHHHHHHTT--EEEEEEEEECS-----CHHHHHHHHHHHHHTTCS---EEEEESCCSSST
T ss_pred cCcHHHHHHHHHHHCC--CEEEEEEEeCC-----CHHHHHHHHHHHHhCCCC---EEEECCCCCCCC
Confidence 3456777888899999 766543 3443 456777777666545667 999999988654
No 95
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=56.57 E-value=21 Score=29.68 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=52.6
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|=+|..-++ +.+.|.+.|++.| ++|.-+--...++..-.+...++.+.+.+..+||. |+-=|-|.=+-++
T Consensus 23 kIaIgsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~G--IliCGTGiG~sIa-- 95 (166)
T 3s5p_A 23 KVAFASDHGGRD-LRMFLQQRASAHG--YEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCC--ILVCGTGIGISIA-- 95 (166)
T ss_dssp EEEEEECGGGHH-HHHHHHHHHHHTT--CEEEEEEC--------CHHHHHHHHHHHTTSCSEE--EEEESSSHHHHHH--
T ss_pred EEEEEECchHHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEE--EEEcCCcHHHHHH--
Confidence 788888887665 6889999999999 78755533333332233556777777777777753 3333434332222
Q ss_pred HHHHhhcCCcEEEecccc
Q 017815 116 AAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTTl 133 (365)
+--..|++...+-.+.
T Consensus 96 --ANKv~GIRAAlc~d~~ 111 (166)
T 3s5p_A 96 --ANKMKGIRCALCSTEY 111 (166)
T ss_dssp --HHTSTTCCEEECSSHH
T ss_pred --hhcCCCeEEEEeCCHH
Confidence 2234688877765553
No 96
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=55.99 E-value=36 Score=30.70 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=53.0
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEE-EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~-~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+..+.+|+.+|++...+.. ..+.+.+.+++.| +++. ...++.+.. + ....++.+++.++| +|+
T Consensus 129 ~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g--~~v~~~~~~~~~~~--d---~~~~~~~l~~~~~d---~v~ 198 (356)
T 3ipc_A 129 GKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAG--VTEVMYEGVNVGDK--D---FSALISKMKEAGVS---IIY 198 (356)
T ss_dssp HHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTT--CCCSEEEECCTTCC--C---CHHHHHHHHHTTCC---EEE
T ss_pred HHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcC--CEEEEEEeeCCCCC--C---HHHHHHHHHhcCCC---EEE
Confidence 444444323689999998654433 6777888898888 5542 223333322 3 34456666777777 887
Q ss_pred EecCchHhhHHHHHHHHhhcCCc
Q 017815 103 ALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~p 125 (365)
..+.+ .++++++......|+.
T Consensus 199 ~~~~~--~~a~~~~~~~~~~g~~ 219 (356)
T 3ipc_A 199 WGGLH--TEAGLIIRQAADQGLK 219 (356)
T ss_dssp EESCH--HHHHHHHHHHHHHTCC
T ss_pred EccCc--hHHHHHHHHHHHCCCC
Confidence 66544 4566666555555543
No 97
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=55.99 E-value=62 Score=25.01 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=48.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|... ..+.+.+.|.+.| +.+. .+. +..++.+.+.+..+| +||. +.+..-+
T Consensus 14 ~~~ILivdd~~~---~~~~l~~~L~~~g--~~v~--~~~---------~~~~a~~~l~~~~~d---lvi~D~~l~~~~g~ 74 (153)
T 3hv2_A 14 RPEILLVDSQEV---ILQRLQQLLSPLP--YTLH--FAR---------DATQALQLLASREVD---LVISAAHLPQMDGP 74 (153)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHTTSS--CEEE--EES---------SHHHHHHHHHHSCCS---EEEEESCCSSSCHH
T ss_pred CceEEEECCCHH---HHHHHHHHhcccC--cEEE--EEC---------CHHHHHHHHHcCCCC---EEEEeCCCCcCcHH
Confidence 457888877754 4556667787777 6543 232 334455556677777 6664 4677778
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++.+.+.. ....+|+|.+
T Consensus 75 ~~~~~l~~-~~~~~~ii~~ 92 (153)
T 3hv2_A 75 TLLARIHQ-QYPSTTRILL 92 (153)
T ss_dssp HHHHHHHH-HCTTSEEEEE
T ss_pred HHHHHHHh-HCCCCeEEEE
Confidence 88887754 2356777766
No 98
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=55.29 E-value=22 Score=29.67 Aligned_cols=90 Identities=18% Similarity=0.140 Sum_probs=53.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
-|+.|-+|..-++ +.+.|.+.|++.| ++|.-+--...++..-.+...++++.+.+..+|| .|+-=|-|.=+-+
T Consensus 21 MkIaIgsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sI-- 93 (169)
T 3ph3_A 21 MKIGIGSDHGGYN-LKREIADFLKKRG--YEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR--GIVICGTGLGISI-- 93 (169)
T ss_dssp CEEEEEECGGGHH-HHHHHHHHHHHTT--CEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHH--
T ss_pred CEEEEEeCchHHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCE--EEEEcCCcHHHHH--
Confidence 4788888887665 6889999999999 7764432222222222345666677777766775 3333344432222
Q ss_pred HHHHHhhcCCcEEEecccc
Q 017815 115 YAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTTl 133 (365)
|+--..|++...+-.+.
T Consensus 94 --aANKv~GIRAAlc~d~~ 110 (169)
T 3ph3_A 94 --AANKVPGIRAAVCTNSY 110 (169)
T ss_dssp --HHTTSTTCCEEECSSHH
T ss_pred --HhhcCCCeEEEEeCCHH
Confidence 22234688777765553
No 99
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=54.45 E-value=64 Score=23.96 Aligned_cols=65 Identities=17% Similarity=0.056 Sum_probs=39.4
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|... ..+.+.+.|.+.| +.+. .+. +..++.+.+.+..+| +||. +.+....
T Consensus 6 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~---------~~~~a~~~l~~~~~d---lii~d~~l~~~~g~ 66 (132)
T 3lte_A 6 SKRILVVDDDQA---MAAAIERVLKRDH--WQVE--IAH---------NGFDAGIKLSTFEPA---IMTLDLSMPKLDGL 66 (132)
T ss_dssp -CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES---------SHHHHHHHHHHTCCS---EEEEESCBTTBCHH
T ss_pred CccEEEEECCHH---HHHHHHHHHHHCC--cEEE--EeC---------CHHHHHHHHHhcCCC---EEEEecCCCCCCHH
Confidence 467888877654 3445556666777 6543 222 234445566677777 6654 4677778
Q ss_pred hHHHHHH
Q 017815 111 DMCGYAA 117 (365)
Q Consensus 111 D~ak~vA 117 (365)
++.+.+.
T Consensus 67 ~~~~~l~ 73 (132)
T 3lte_A 67 DVIRSLR 73 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887663
No 100
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=54.44 E-value=1e+02 Score=26.72 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhhC-CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 46 APLYLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~-g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+..+.+-+.+.+.+. | +.+.+...... ..+.+...+.++.+...++| .||-.+..... ....+......++
T Consensus 24 ~~~~~~gi~~~a~~~~g--~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~vd---giii~~~~~~~-~~~~~~~~~~~~i 95 (304)
T 3gbv_A 24 WTDVQKGIREAVTTYSD--FNISANITHYD--PYDYNSFVATSQAVIEEQPD---GVMFAPTVPQY-TKGFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHHHHHHTGG--GCEEEEEEEEC--SSCHHHHHHHHHHHHTTCCS---EEEECCSSGGG-THHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHh--CCeEEEEEcCC--CCCHHHHHHHHHHHHhcCCC---EEEECCCChHH-HHHHHHHHHHCCC
Confidence 444677777788877 7 66654433221 23566777788888888888 88888764321 1122222334699
Q ss_pred cEEEecccc
Q 017815 125 SFIQIPTTV 133 (365)
Q Consensus 125 p~i~IPTTl 133 (365)
|+|.+-+..
T Consensus 96 PvV~~~~~~ 104 (304)
T 3gbv_A 96 PYIYIDSQI 104 (304)
T ss_dssp CEEEESSCC
T ss_pred eEEEEeCCC
Confidence 999997663
No 101
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=54.39 E-value=61 Score=28.72 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCCc----eEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhc
Q 017815 47 PLYLDKVTDALTRGNPNV----SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 122 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i----~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~ 122 (365)
....+-+.+.+.+.| + ++.+...+. . .+.+...+.++.+.+.++| .||.+|... ...+. ....
T Consensus 23 ~~~~~gi~~~l~~~G--y~~g~~v~l~~~~~-~--~~~~~~~~~~~~l~~~~vD---gII~~~~~~----~~~~~-~~~~ 89 (302)
T 2qh8_A 23 DATRQGLLDGLKAKG--YEEGKNLEFDYKTA-Q--GNPAIAVQIARQFVGENPD---VLVGIATPT----AQALV-SATK 89 (302)
T ss_dssp HHHHHHHHHHHHHTT--CCBTTTEEEEEEEC-T--TCHHHHHHHHHHHHHTCCS---EEEEESHHH----HHHHH-HHCS
T ss_pred HHHHHHHHHHHHHcC--CCCCCceEEEEecC-C--CCHHHHHHHHHHHHhCCCC---EEEECChHH----HHHHH-hcCC
Confidence 336677788888888 6 444333332 2 2556777888888888888 999987432 12222 1357
Q ss_pred CCcEEEec
Q 017815 123 GVSFIQIP 130 (365)
Q Consensus 123 g~p~i~IP 130 (365)
++|+|.+-
T Consensus 90 ~iPvV~~~ 97 (302)
T 2qh8_A 90 TIPIVFTA 97 (302)
T ss_dssp SSCEEEEE
T ss_pred CcCEEEEe
Confidence 89999874
No 102
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=54.06 E-value=72 Score=24.50 Aligned_cols=78 Identities=10% Similarity=-0.042 Sum_probs=45.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..|++||-|.... .+.+.+.|.+.| ....+..+. +..++.+.+.+..+| +||. +++...+
T Consensus 15 ~~~iLivdd~~~~---~~~l~~~L~~~~--~~~~v~~~~---------~~~~a~~~l~~~~~d---lii~d~~l~~~~g~ 77 (152)
T 3eul_A 15 KVRVVVGDDHPLF---REGVVRALSLSG--SVNVVGEAD---------DGAAALELIKAHLPD---VALLDYRMPGMDGA 77 (152)
T ss_dssp CEEEEEECSSHHH---HHHHHHHHHHHS--SEEEEEEES---------SHHHHHHHHHHHCCS---EEEEETTCSSSCHH
T ss_pred eEEEEEEcCCHHH---HHHHHHHHhhCC--CeEEEEEeC---------CHHHHHHHHHhcCCC---EEEEeCCCCCCCHH
Confidence 5678888776643 444555565554 221111222 334455556667777 7765 5777888
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++.+.+... ...+|++.+
T Consensus 78 ~~~~~l~~~-~~~~~ii~~ 95 (152)
T 3eul_A 78 QVAAAVRSY-ELPTRVLLI 95 (152)
T ss_dssp HHHHHHHHT-TCSCEEEEE
T ss_pred HHHHHHHhc-CCCCeEEEE
Confidence 888877432 345676666
No 103
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=54.02 E-value=56 Score=31.66 Aligned_cols=92 Identities=14% Similarity=0.044 Sum_probs=55.0
Q ss_pred cchhhhhccCCceEEEEEccCch-HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~-~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
..++++.++ -+++.+|++..-+ +...+.+++.+++.| +.+... .++ ..+....+...+..+++.+.+ ..+|
T Consensus 188 i~~ll~~fg-w~~V~li~~dd~~G~~~~~~~~~~~~~~G--i~v~~~~~i~---~~~~~~d~~~~l~~i~~~~~~-a~vi 260 (496)
T 3ks9_A 188 MLDIVKRYN-WTYVSAVHTEGNYGESGMDAFKELAAQEG--LSIAHSDKIY---SNAGEKSFDRLLRKLRERLPK-ARVV 260 (496)
T ss_dssp HHHHHHHTT-CCEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEEC---TTCCHHHHHHHHHHHHTTTTT-TCEE
T ss_pred HHHHHHHcC-CcEEEEEEeccHHHHHHHHHHHHHHHHcC--ceEEEEEEEC---CCCCHHHHHHHHHHHHhccCc-eEEE
Confidence 355666553 5788877765544 447888888999988 665422 222 124567788888888875322 2377
Q ss_pred EEecCchHhhHHHHHHHHhhcCC
Q 017815 102 VALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 102 IaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
|..|.+ -|++.++..+...|+
T Consensus 261 i~~~~~--~~~~~l~~~~~~~g~ 281 (496)
T 3ks9_A 261 VCFCEG--MTVRGLLSAMRRLGV 281 (496)
T ss_dssp EEECCH--HHHHHHHHHHHHHTC
T ss_pred EEecCh--HHHHHHHHHHHHhCC
Confidence 777765 344444433333343
No 104
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=53.90 E-value=74 Score=28.30 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=50.7
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+..+.+|+.++++...+.. ..+.+.+.+++.| +++.. ..++.+.. ++ ...++.+++.++| +|+
T Consensus 129 ~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g--~~v~~~~~~~~~~~--d~---~~~~~~l~~~~~d---~i~ 198 (346)
T 1usg_A 129 AKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAAN--ANVVFFDGITAGEK--DF---SALIARLKKENID---FVY 198 (346)
T ss_dssp HHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTT--CCEEEEEECCTTCC--CC---HHHHHHHHHTTCC---EEE
T ss_pred HHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcC--CEEEEEeccCCCCc--CH---HHHHHHHHhcCCC---EEE
Confidence 455533213689999998654433 5666788888888 66532 23333322 33 3455566666777 888
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
..+.+ .++.+++.+....|+
T Consensus 199 ~~~~~--~~a~~~~~~~~~~g~ 218 (346)
T 1usg_A 199 YGGYY--PEMGQMLRQARSVGL 218 (346)
T ss_dssp EESCH--HHHHHHHHHHHHTTC
T ss_pred EcCcc--hHHHHHHHHHHHcCC
Confidence 87743 345555544444453
No 105
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=53.79 E-value=22 Score=32.73 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=54.3
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~-~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+. +.+|+.+|++...+.. ..+.+.+.+++.| +++.. ..++.+.. ++ ...+..+++.++| +|+
T Consensus 134 ~~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~~~~~G--~~v~~~~~~~~~~~--d~---~~~l~~i~~~~~d---~v~ 202 (379)
T 3n0w_A 134 VQAQLAK-GYKTWFLMLPDAAYGDLMNAAIRRELTAGG--GQIVGSVRFPFETQ--DF---SSYLLQAKASGAQ---LIV 202 (379)
T ss_dssp HHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHHT--CEEEEEEEECTTCC--CC---HHHHHHHHHHTCS---EEE
T ss_pred HHHHHHc-CCcEEEEEecccchhHHHHHHHHHHHHHcC--CEEEEEEeCCCCCC--CH---HHHHHHHHHCCCC---EEE
Confidence 4556655 4689999987665443 6777888888888 66532 23343332 33 3456666777888 888
Q ss_pred EecCchHhhHHHHHHHHhhcCC
Q 017815 103 ALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~ 124 (365)
..+.+ .|.+.++......|+
T Consensus 203 ~~~~~--~~~~~~~~~~~~~g~ 222 (379)
T 3n0w_A 203 STSGG--AANINIMKQAREFGL 222 (379)
T ss_dssp ECCCH--HHHHHHHHHHHHTTC
T ss_pred Eeccc--chHHHHHHHHHHcCC
Confidence 76654 466666655545554
No 106
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=53.70 E-value=82 Score=28.09 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=59.8
Q ss_pred cchhhhhccC-CceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 24 NNCLYYRHVQ-GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 24 ~~~~l~~~~~-~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
+-++++++.+ .+++.+++|++.... ..+.+++.++..| +++...... +.+.+.+..+.+.+ +.| +
T Consensus 129 ~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g--~~~v~~~~~------~~~~~~~~~~~l~~-~~d---~ 196 (302)
T 3lkv_A 129 HVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHG--IKLVEATAL------KSADVQSATQAIAE-KSD---V 196 (302)
T ss_dssp HHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT--CEEEEEECS------SGGGHHHHHHHHHT-TCS---E
T ss_pred HHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcC--CEEEEEecC------ChHHHHHHHHhccC-Cee---E
Confidence 3456666543 688999999875433 5677788888888 665433222 34556666665543 455 8
Q ss_pred EEEecCchHhhHHHHHH-HHhhcCCcEEEe
Q 017815 101 FVALGGGVIGDMCGYAA-ASYLRGVSFIQI 129 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA-~~~~~g~p~i~I 129 (365)
+.....+.+......+. .+...++|++..
T Consensus 197 i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~ 226 (302)
T 3lkv_A 197 IYALIDNTVASAIEGMIVAANQAKTPVFGA 226 (302)
T ss_dssp EEECSCHHHHHTHHHHHHHHHHTTCCEEES
T ss_pred EEEeCCcchhhHHHHHHHHHhhcCCceeec
Confidence 98888887776555443 234567887764
No 107
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=53.59 E-value=59 Score=29.32 Aligned_cols=38 Identities=11% Similarity=-0.022 Sum_probs=27.8
Q ss_pred CCcceEEEecCchHh-------hHHHHHHHHhhcCCcEEEecccc
Q 017815 96 DRRCTFVALGGGVIG-------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 96 dr~~~IIaiGGGsv~-------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+.-|.||-.||-..+ ++.+++...+..+.++.+|++..
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp 188 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGP 188 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGG
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccH
Confidence 445688888884333 35666666678899999999975
No 108
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=53.35 E-value=63 Score=26.62 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHH-HcCCCCcceEEEecCchHh--hHHHH
Q 017815 47 PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAI-ESRLDRRCTFVALGGGVIG--DMCGY 115 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~-~~~~dr~~~IIaiGGGsv~--D~ak~ 115 (365)
+.-++.+.+.|.+.| +++..+ ++++ +.+.+.+.+..+. ..++| +||.-||=++. |+++-
T Consensus 39 D~ng~~L~~~L~~~G--~~v~~~~iV~D-----d~~~i~~al~~~~a~~~~D---lVittGG~g~~~~D~t~e 101 (178)
T 3iwt_A 39 DESGDIIKQLLIENG--HKIIGYSLVPD-----DKIKILKAFTDALSIDEVD---VIISTGGTGYSPTDITVE 101 (178)
T ss_dssp CHHHHHHHHHHHHTT--CEEEEEEEECS-----CHHHHHHHHHHHHTCTTCC---EEEEESCCSSSTTCCHHH
T ss_pred cchHHHHHHHHHHCC--CEEEEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEecCCcccCCCCchHH
Confidence 345677888999999 776543 3343 4456665554433 23455 99999998776 45543
No 109
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=53.28 E-value=56 Score=29.95 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=54.3
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+++.+..+.+|+.+|++...+.. ..+.+++.+++.| +++... .++.+. .+ +...+..+++.++| +|+
T Consensus 134 ~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G--~~v~~~~~~~~~~--~d---~~~~~~~l~~~~~d---av~ 203 (392)
T 3lkb_A 134 LEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELG--LQIVDVQEVGSGN--LD---NTALLKRFEQAGVE---YVV 203 (392)
T ss_dssp HHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHT--CEEEEEEECCTTC--CC---CHHHHHHHHHTTCC---EEE
T ss_pred HHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcC--CeEEEEEeeCCCC--cC---HHHHHHHHHhcCCC---EEE
Confidence 455555323689999998765433 5677888888888 665322 233222 23 34455666777777 888
Q ss_pred EecCchHhhHHHHHHHHhhcCCc
Q 017815 103 ALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 103 aiGGGsv~D~ak~vA~~~~~g~p 125 (365)
..+.+ .+++.++......|+.
T Consensus 204 ~~~~~--~~a~~~~~~~~~~g~~ 224 (392)
T 3lkb_A 204 HQNVA--GPVANILKDAKRLGLK 224 (392)
T ss_dssp EESCH--HHHHHHHHHHHHTTCC
T ss_pred EecCc--chHHHHHHHHHHcCCC
Confidence 76644 4566666555555643
No 110
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=53.04 E-value=6.6 Score=40.96 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh--------------------hcCCcEEEecccc---cc
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTV---MA 135 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~--------------------~~g~p~i~IPTTl---~A 135 (365)
+.+...++++.+++.++| .+|.|||--.++.|..++.-| ..++|+|.||-|. +.
T Consensus 84 ~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 84 KREGRRQAAGNLISQGID---ALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp SHHHHHHHHHHHHHHTEE---EEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 446677889999999999 999999988888886543111 1379999999998 45
Q ss_pred ccccccCCceE
Q 017815 136 QVDSSVGGKTG 146 (365)
Q Consensus 136 ~~~s~~~~~~~ 146 (365)
+||-++|--++
T Consensus 161 gTD~TiGfdTA 171 (787)
T 3o8o_A 161 GTDSTIGAYSA 171 (787)
T ss_dssp TSSCCEEHHHH
T ss_pred CCCCCCCcHHH
Confidence 55555543333
No 111
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=52.61 E-value=51 Score=23.60 Aligned_cols=76 Identities=9% Similarity=-0.054 Sum_probs=42.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
++++||.|... ..+.+.+.|...| +++. .+. +. .+..+.+.+..+| +||. +.+....+
T Consensus 2 ~~iliv~~~~~---~~~~l~~~l~~~g--~~v~--~~~------~~---~~~~~~l~~~~~d---lii~d~~~~~~~~~~ 62 (119)
T 2j48_A 2 GHILLLEEEDE---AATVVCEMLTAAG--FKVI--WLV------DG---STALDQLDLLQPI---VILMAWPPPDQSCLL 62 (119)
T ss_dssp CEEEEECCCHH---HHHHHHHHHHHTT--CEEE--EES------CH---HHHHHHHHHHCCS---EEEEECSTTCCTHHH
T ss_pred CEEEEEeCCHH---HHHHHHHHHHhCC--cEEE--Eec------CH---HHHHHHHHhcCCC---EEEEecCCCCCCHHH
Confidence 57777777654 3455666677777 6542 222 33 3344445556666 6553 23555667
Q ss_pred HHHHHHHHh-hcCCcEEEe
Q 017815 112 MCGYAAASY-LRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~-~~g~p~i~I 129 (365)
+.+.+.... ...+|++.+
T Consensus 63 ~~~~l~~~~~~~~~~ii~~ 81 (119)
T 2j48_A 63 LLQHLREHQADPHPPLVLF 81 (119)
T ss_dssp HHHHHHHTCCCSSCCCEEE
T ss_pred HHHHHHhccccCCCCEEEE
Confidence 776663321 146777765
No 112
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=52.58 E-value=52 Score=25.04 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=46.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|... ..+.+.+.|...| +.+.+..+. +..++.+.+.+..+| +||. +.++...
T Consensus 5 ~~~ILivdd~~~---~~~~l~~~L~~~~--~~~~v~~~~---------~~~~a~~~l~~~~~d---lii~D~~l~~~~g~ 67 (144)
T 3kht_A 5 SKRVLVVEDNPD---DIALIRRVLDRKD--IHCQLEFVD---------NGAKALYQVQQAKYD---LIILDIGLPIANGF 67 (144)
T ss_dssp CEEEEEECCCHH---HHHHHHHHHHHTT--CCEEEEEES---------SHHHHHHHHTTCCCS---EEEECTTCGGGCHH
T ss_pred CCEEEEEeCCHH---HHHHHHHHHHhcC--CCeeEEEEC---------CHHHHHHHhhcCCCC---EEEEeCCCCCCCHH
Confidence 357777777654 3455666677777 553333333 334455555666666 6664 4566677
Q ss_pred hHHHHHHHH-hhcCCcEEEec
Q 017815 111 DMCGYAAAS-YLRGVSFIQIP 130 (365)
Q Consensus 111 D~ak~vA~~-~~~g~p~i~IP 130 (365)
++.+.+... ....+|+|.+-
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 68 EVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHhcccccCCCEEEEe
Confidence 777766321 13467777763
No 113
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=52.47 E-value=19 Score=38.32 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH--------------------hhcCCcEEEecccc---cc
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS--------------------YLRGVSFIQIPTTV---MA 135 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~--------------------~~~g~p~i~IPTTl---~A 135 (365)
+.+...++++.+++.++| .+|.|||--.++.|..++.- -..++++|.||-|. +.
T Consensus 261 ~~~~~~~~~~~L~~~gId---~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 261 ERSGRLKACKNMIDMGID---ALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp SHHHHHHHHHHHHHHTCC---EEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 345667788999999999 99999998888887644311 12479999999997 45
Q ss_pred ccccccCC
Q 017815 136 QVDSSVGG 143 (365)
Q Consensus 136 ~~~s~~~~ 143 (365)
+||-++|-
T Consensus 338 gTD~TiGf 345 (941)
T 3opy_B 338 STDATIGA 345 (941)
T ss_dssp SCSSCEEH
T ss_pred CCCCCCCh
Confidence 55555443
No 114
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=52.46 E-value=65 Score=30.02 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=51.5
Q ss_pred chhhhhccCCceEEEE------EccCchHHHHHHHHHHHhh-CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 017815 25 NCLYYRHVQGKKVLVV------TNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDR 97 (365)
Q Consensus 25 ~~~l~~~~~~~~~liv------td~~~~~~~~~~v~~~L~~-~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr 97 (365)
.++++.++ -+++.+| ++..-+-...+.+.+.+.+ .| +.+....+.. ++...+...+..+++ +++
T Consensus 138 ~~~l~~~~-w~~v~ii~~~d~~~~~~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~----~~~~d~~~~l~~i~~-~~~- 208 (435)
T 1dp4_A 138 TALHRRLG-WEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLN--ITVNHQEFVE----GDPDHYPKLLRAVRR-KGR- 208 (435)
T ss_dssp HHHHHHHT-CCSEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHC--CEEEEEEECT----TCGGGHHHHHHHHHH-HCS-
T ss_pred HHHHHHCC-CcEEEEEEEccCCCCcchHHHHHHHHHHHHHhhcC--eEEEEEEEec----CchhhHHHHHHHHHh-hCc-
Confidence 45666653 5788888 5433222334556677776 77 6664433321 233456777777777 677
Q ss_pred cceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 98 RCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 98 ~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+||..|.+. |+..++..+...|+
T Consensus 209 --viv~~~~~~--~~~~~~~~a~~~g~ 231 (435)
T 1dp4_A 209 --VIYICSSPD--AFRNLMLLALNAGL 231 (435)
T ss_dssp --EEEEESCHH--HHHHHHHHHHHTTC
T ss_pred --eEEEecChH--HHHHHHHHHHHcCC
Confidence 888887654 56666544444444
No 115
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=52.16 E-value=75 Score=26.09 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=47.4
Q ss_pred ceEEEEEccCchH---HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH-HH-----cCCCCcceEEEec
Q 017815 35 KKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA-IE-----SRLDRRCTFVALG 105 (365)
Q Consensus 35 ~~~livtd~~~~~---~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~-~~-----~~~dr~~~IIaiG 105 (365)
-|+.||..+--.. .+.+--.+.|.+.| .++.++.+|+. +|- --.++.+ +. .++| .||++|
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G--~~i~v~~VPGa-----fEi-P~aa~~la~~~~~~~~~yD---avIaLG 81 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAG--ATYDVVTVPGA-----LEI-PATISFALDGADNGGTEYD---GFVALG 81 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTT--CEEEEEEESSG-----GGH-HHHHHHHHHHHHTTCCCCS---EEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcC--CCeEEEECCcH-----HHH-HHHHHHHHhhccccCCCCC---EEEEee
Confidence 4788887765333 45666677788888 56666777763 322 2222332 33 4566 999999
Q ss_pred ----CchHhh------HHHHHH-HHhhcCCcEEEe
Q 017815 106 ----GGVIGD------MCGYAA-ASYLRGVSFIQI 129 (365)
Q Consensus 106 ----GGsv~D------~ak~vA-~~~~~g~p~i~I 129 (365)
|++..+ +++.+. .....++|++.-
T Consensus 82 ~VIrG~T~Hfd~Va~~v~~gl~~vsl~~~vPV~~G 116 (157)
T 2i0f_A 82 TVIRGETYHFDIVSNESCRALTDLSVEESIAIGNG 116 (157)
T ss_dssp EEECCSSSTTHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eeecCCchHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 555333 111111 123467887763
No 116
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=51.92 E-value=38 Score=27.74 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHh--hHHHHHH
Q 017815 47 PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGYAA 117 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~--D~ak~vA 117 (365)
+.-...+.+.|++.| +++..+ ++++ +.+.+.+.++.+.+. ++| +||--||=++. |+++-+.
T Consensus 20 D~n~~~l~~~l~~~G--~~v~~~~iv~D-----d~~~i~~~l~~~~~~~~~D---lVittGG~g~g~~D~t~ea~ 84 (164)
T 2is8_A 20 DTTHLAIREVLAGGP--FEVAAYELVPD-----EPPMIKKVLRLWADREGLD---LILTNGGTGLAPRDRTPEAT 84 (164)
T ss_dssp CCHHHHHHHHHTTSS--EEEEEEEEECS-----CHHHHHHHHHHHHHTSCCS---EEEEESCCSSSTTCCHHHHH
T ss_pred cchHHHHHHHHHHCC--CeEeEEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEEcCCCCCCCCCChHHHH
Confidence 335667788888888 766433 3443 556777777766653 566 99999998766 8876553
No 117
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=51.90 E-value=53 Score=30.27 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 83 LMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 83 v~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
..++++++... .+-+.+|+++|||..+= +++++. .....++++.|...
T Consensus 187 ~~EI~~q~~~~-~~~d~vv~~vGtGGt~aGi~~~~k-~~~~~~~vigVe~~ 235 (342)
T 4d9b_A 187 ALEIAQQCEEV-VGLSSVVVASGSAGTHAGLAVGLE-HLMPDVELIGVTVS 235 (342)
T ss_dssp HHHHHHHHTTT-CCCCEEEEEESSSHHHHHHHHHHH-HHCTTSEEEEEESS
T ss_pred HHHHHHHHhcc-CCCCEEEEeCCCCHHHHHHHHHHH-hhCCCCeEEEEEec
Confidence 34455554321 12235788888876542 222221 11234566666544
No 118
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=51.72 E-value=1.2e+02 Score=26.14 Aligned_cols=84 Identities=6% Similarity=0.049 Sum_probs=54.1
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+.+.+.+.+.| +++.++ ... .+.+.-.+.++.+...++| .||-.+... -+
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~--~~~---~~~~~~~~~~~~l~~~~vd---giIi~~~~~-~~ 76 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRG--YIGVLF--DAN---ADIEREKTLLRAIGSRGFD---GLILQSFSN-PQ 76 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTT--CEEEEE--ECT---TCHHHHHHHHHHHHTTTCS---EEEEESSCC-HH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCC--CEEEEE--eCC---CCHHHHHHHHHHHHhCCCC---EEEEecCCc-HH
Confidence 4555555432 23346777777888888 665433 221 2456667788888888888 898888776 33
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
.. ......++|+|.+-..
T Consensus 77 ~~---~~l~~~~iPvV~i~~~ 94 (276)
T 3jy6_A 77 TV---QEILHQQMPVVSVDRE 94 (276)
T ss_dssp HH---HHHHTTSSCEEEESCC
T ss_pred HH---HHHHHCCCCEEEEecc
Confidence 33 2234579999999665
No 119
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=50.92 E-value=60 Score=24.36 Aligned_cols=76 Identities=20% Similarity=0.093 Sum_probs=45.2
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---e-cCchH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---L-GGGVI 109 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---i-GGGsv 109 (365)
..+++||.|... ..+.+.+.|...| +++.. .+. + ..++.+.+.+..+| +||. + |+...
T Consensus 9 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v~~-~~~------~---~~~a~~~~~~~~~d---lii~d~~~~~~~~g 70 (140)
T 3cg0_A 9 LPGVLIVEDGRL---AAATLRIQLESLG--YDVLG-VFD------N---GEEAVRCAPDLRPD---IALVDIMLCGALDG 70 (140)
T ss_dssp CCEEEEECCBHH---HHHHHHHHHHHHT--CEEEE-EES------S---HHHHHHHHHHHCCS---EEEEESSCCSSSCH
T ss_pred CceEEEEECCHH---HHHHHHHHHHHCC--CeeEE-EEC------C---HHHHHHHHHhCCCC---EEEEecCCCCCCCH
Confidence 457888877754 3444555566556 65421 232 2 33444555566677 6653 2 45677
Q ss_pred hhHHHHHHHHhhcCCcEEEe
Q 017815 110 GDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~I 129 (365)
.++.+.+... ..+|+|.+
T Consensus 71 ~~~~~~l~~~--~~~~ii~l 88 (140)
T 3cg0_A 71 VETAARLAAG--CNLPIIFI 88 (140)
T ss_dssp HHHHHHHHHH--SCCCEEEE
T ss_pred HHHHHHHHhC--CCCCEEEE
Confidence 8888877543 67888876
No 120
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=50.83 E-value=34 Score=26.62 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+++.+.+++.++| .++||++..+.-..-+.+......|+++..+|.-
T Consensus 55 ~~l~~~~~~~~id--~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 55 KYLERLIKKHCIS--TVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp GGHHHHHHHHTCC--EEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCH
T ss_pred HHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCH
Confidence 3455555667776 4889998766544444444445689999999986
No 121
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=50.81 E-value=40 Score=31.09 Aligned_cols=88 Identities=9% Similarity=-0.089 Sum_probs=54.2
Q ss_pred chhhhhccCCceEEEEEc-cCchHH-HHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHH--HHHcCCCCcc
Q 017815 25 NCLYYRHVQGKKVLVVTN-NTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDK--AIESRLDRRC 99 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd-~~~~~~-~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~--~~~~~~dr~~ 99 (365)
.+++.+..+.+|+.+|++ ...+.. ..+.+.+.+++.| +++... .++.+ ...+...+.. +++.++|
T Consensus 132 ~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G--~~v~~~~~~~~~-----~~d~~~~~~~~~l~~~~~d--- 201 (391)
T 3eaf_A 132 LAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLG--LQVVGDYDLPLR-----ATEADAERIAREMLAADPD--- 201 (391)
T ss_dssp HHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGT--EEEEEEEECCTT-----CCHHHHHHHHHHHHTTCCS---
T ss_pred HHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHHcC--CceeeeeccCCC-----CcCHHHHHHHHHHHHcCCC---
Confidence 455554213689999998 544433 6777888888888 665322 22322 2355666667 7777877
Q ss_pred eEEEecCchHhhHHHHHHHHhhcCC
Q 017815 100 TFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 100 ~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
+|+..+.+. +++.++..+...|+
T Consensus 202 av~~~~~~~--~~~~~~~~~~~~g~ 224 (391)
T 3eaf_A 202 YVWCGNTIS--SCSLLGRAMAKVGL 224 (391)
T ss_dssp EEEECSCHH--HHHHHHHHHHHHTC
T ss_pred EEEEecCcH--HHHHHHHHHHHCCC
Confidence 888876543 56666554444454
No 122
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=50.65 E-value=1.3e+02 Score=26.36 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=48.5
Q ss_pred CCceEEEEEccCchH---HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch-
Q 017815 33 QGKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV- 108 (365)
Q Consensus 33 ~~~~~livtd~~~~~---~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs- 108 (365)
++.++++|+.....+ .+.+.+++.+...|. +++..+.++. ..=.+.+.++.+.+.+.. ++++|-+.||.
T Consensus 33 ~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~-i~~e~~~vd~---~df~~~v~~i~~~i~~~~---~~iivnlsGG~R 105 (244)
T 2wte_A 33 KEDSLVIVVPSPIVSGTRAAIESLRAQISRLNY-PPPRIYEIEI---TDFNLALSKILDIILTLP---EPIISDLTMGMR 105 (244)
T ss_dssp TTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTC-CCEEEEEECC---CSHHHHHHHHHHHHTTSC---SSEEEECSSSCH
T ss_pred CCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCC-CceEEEEECC---ccHHHHHHHHHHHHhhcC---CcEEEEecCCch
Confidence 367888888764322 278888888876551 3565555542 223344566777766532 25888777776
Q ss_pred HhhHHHHHHHH
Q 017815 109 IGDMCGYAAAS 119 (365)
Q Consensus 109 v~D~ak~vA~~ 119 (365)
++-++-+.|+.
T Consensus 106 il~l~~l~A~~ 116 (244)
T 2wte_A 106 MINTLILLGII 116 (244)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45566666543
No 123
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=50.56 E-value=62 Score=24.01 Aligned_cols=76 Identities=9% Similarity=0.058 Sum_probs=43.2
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
++|++||.|... ..+.+.+.|.+.| +.+. .+. + ..++.+.+.+..+| +||. +.+..-.
T Consensus 7 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---lvi~d~~l~~~~g~ 67 (130)
T 3eod_A 7 GKQILIVEDEQV---FRSLLDSWFSSLG--ATTV--LAA------D---GVDALELLGGFTPD---LMICDIAMPRMNGL 67 (130)
T ss_dssp TCEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------C---HHHHHHHHTTCCCS---EEEECCC-----CH
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHhCC--ceEE--EeC------C---HHHHHHHHhcCCCC---EEEEecCCCCCCHH
Confidence 568888887764 3455566677777 5542 222 2 34455555666666 6654 3566777
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++.+.+.. ....+|++.+
T Consensus 68 ~~~~~l~~-~~~~~~ii~~ 85 (130)
T 3eod_A 68 KLLEHIRN-RGDQTPVLVI 85 (130)
T ss_dssp HHHHHHHH-TTCCCCEEEE
T ss_pred HHHHHHHh-cCCCCCEEEE
Confidence 88877643 2346777766
No 124
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=50.51 E-value=52 Score=29.45 Aligned_cols=76 Identities=11% Similarity=0.070 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhhCCCC--ceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcC
Q 017815 46 APLYLDKVTDALTRGNPN--VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~--i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g 123 (365)
.+...+-+++.|++.|.. .++.+. +.+.+ -+.+...++++.+...++| +||++|.-+ +.+++ .....
T Consensus 22 ld~~~~G~~~~L~~~G~~~g~nv~~~-~~~a~--gd~~~~~~~~~~l~~~~~D---lIiai~t~a----a~a~~-~~~~~ 90 (302)
T 3lkv_A 22 LDATRQGLLDGLKAKGYEEGKNLEFD-YKTAQ--GNPAIAVQIARQFVGENPD---VLVGIATPT----AQALV-SATKT 90 (302)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEE-EEECT--TCHHHHHHHHHHHHTTCCS---EEEEESHHH----HHHHH-HHCSS
T ss_pred HHHHHHHHHHHHHhhCcccCCcEEEE-EEeCC--CCHHHHHHHHHHHHhcCCc---EEEEcCCHH----HHHHH-hhcCC
Confidence 344666778888877610 123322 22222 3678889999999988888 999997433 33333 23467
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|++..-.|
T Consensus 91 iPVVf~~v~ 99 (302)
T 3lkv_A 91 IPIVFTAVT 99 (302)
T ss_dssp SCEEEEEES
T ss_pred CCeEEEecC
Confidence 888875443
No 125
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=50.33 E-value=26 Score=28.60 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=52.0
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|=+|..-++ +.+.|.+.|++.| ++|.-+--...++..-.+...++.+.+.+..+|| .|+-=|-|.=+-++
T Consensus 2 kI~igsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sia-- 74 (149)
T 3he8_A 2 KIGIGSDHGGYN-LKREIADFLKKRG--YEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR--GIVICGTGLGISIA-- 74 (149)
T ss_dssp EEEEEECGGGHH-HHHHHHHHHHHTT--CEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHHH--
T ss_pred EEEEEECchhHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCE--EEEEcCCcHHHHHH--
Confidence 567778877655 6889999999999 7764432222222222445666777777767775 33333444333222
Q ss_pred HHHHhhcCCcEEEecccc
Q 017815 116 AAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTTl 133 (365)
+--..|++...+-.+.
T Consensus 75 --ANKv~GIRAAl~~d~~ 90 (149)
T 3he8_A 75 --ANKVPGIRAAVCTNSY 90 (149)
T ss_dssp --HHTSTTCCEEECSSHH
T ss_pred --hhcCCCeEEEEeCCHH
Confidence 2234688877765553
No 126
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=50.01 E-value=34 Score=28.15 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=52.9
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
.-++.|=+|..-++ +.+.|.+.|++.| ++|.-+--...++.--.+...++.+.+.+..+||. |+-=|-|.=+-+
T Consensus 12 ~~~i~igsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~G--IliCGTGiG~si- 85 (155)
T 1o1x_A 12 HVKIAIASDHAAFE-LKEKVKNYLLGKG--IEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFG--ILLCGTGLGMSI- 85 (155)
T ss_dssp CCEEEEEECSTTHH-HHHHHHHHHHHTT--CEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEE--EEEESSSHHHHH-
T ss_pred ceeEEEeeCchHHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceE--EEEcCCcHHHHH-
Confidence 35788888887665 6889999999999 77644322222222233445666677766667753 333333332222
Q ss_pred HHHHHHhhcCCcEEEecccc
Q 017815 114 GYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTTl 133 (365)
|+--..|++...+-.+.
T Consensus 86 ---aANKv~GIRAAl~~d~~ 102 (155)
T 1o1x_A 86 ---AANRYRGIRAALCLFPD 102 (155)
T ss_dssp ---HHTTSTTCCEEECSSHH
T ss_pred ---HhhcCCCeEEEEeCCHH
Confidence 22234688777665543
No 127
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=49.53 E-value=1.1e+02 Score=26.37 Aligned_cols=86 Identities=9% Similarity=0.063 Sum_probs=54.3
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+.+.+.+.+.| +++.++ ... .+.+.-.+.++.+...++| .||-.+....-+
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~~---~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~ 78 (291)
T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHKG--YSVLLA--NTA---EDIVREREAVGQFFERRVD---GLILAPSEGEHD 78 (291)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTT--CEEEEE--ECT---TCHHHHHHHHHHHHHTTCS---EEEECCCSSCCH
T ss_pred cEEEEEECCCcchHHHHHHHHHHHHHHHCC--CEEEEE--eCC---CCHHHHHHHHHHHHHCCCC---EEEEeCCCCChH
Confidence 4555555332 23336677777888888 665433 221 2456667788888888998 888877665333
Q ss_pred HHHHHHHHhhcCCcEEEecccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTTl 133 (365)
..+ .....++|+|.+-...
T Consensus 79 ~~~---~~~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 79 YLR---TELPKTFPIVAVNREL 97 (291)
T ss_dssp HHH---HSSCTTSCEEEESSCC
T ss_pred HHH---HhhccCCCEEEEeccc
Confidence 332 2345799999987663
No 128
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=49.45 E-value=67 Score=24.94 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=46.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|... ..+.+.+.|.+.| +++. .+. +..++.+.+.+..+| +||. +.+..-+
T Consensus 7 ~~~ILivdd~~~---~~~~l~~~L~~~g--~~v~--~~~---------~~~~al~~l~~~~~d---lii~D~~l~~~~g~ 67 (154)
T 3gt7_A 7 AGEILIVEDSPT---QAEHLKHILEETG--YQTE--HVR---------NGREAVRFLSLTRPD---LIISDVLMPEMDGY 67 (154)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHTTT--CEEE--EES---------SHHHHHHHHTTCCCS---EEEEESCCSSSCHH
T ss_pred CCcEEEEeCCHH---HHHHHHHHHHHCC--CEEE--EeC---------CHHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 457888877654 4555666777777 6542 232 234455555666666 6654 3577778
Q ss_pred hHHHHHHHHh-hcCCcEEEe
Q 017815 111 DMCGYAAASY-LRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~-~~g~p~i~I 129 (365)
++++.+.... ...+|+|.+
T Consensus 68 ~~~~~lr~~~~~~~~pii~~ 87 (154)
T 3gt7_A 68 ALCRWLKGQPDLRTIPVILL 87 (154)
T ss_dssp HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHhCCCcCCCCEEEE
Confidence 8887764321 246777766
No 129
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=49.16 E-value=77 Score=26.75 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++++..+.+..+ +.++| +||+=|| .|.++. -..++|+|.||.|
T Consensus 37 ~l~~~v~~a~~~-~~~~d---VIISRGg-----ta~~lr--~~~~iPVV~I~~s 79 (196)
T 2q5c_A 37 SLTRASKIAFGL-QDEVD---AIISRGA-----TSDYIK--KSVSIPSISIKVT 79 (196)
T ss_dssp CHHHHHHHHHHH-TTTCS---EEEEEHH-----HHHHHH--TTCSSCEEEECCC
T ss_pred CHHHHHHHHHHh-cCCCe---EEEECCh-----HHHHHH--HhCCCCEEEEcCC
Confidence 677777777777 77777 9988775 345552 2357999999999
No 130
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=49.12 E-value=38 Score=34.92 Aligned_cols=96 Identities=13% Similarity=-0.013 Sum_probs=58.7
Q ss_pred eecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcc
Q 017815 20 LLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRC 99 (365)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~ 99 (365)
.+....++++.++ -+++.+|+|........+.+.+.+++.| +.+.........+.++..++...+..+++.+++
T Consensus 108 ~~~a~~~l~~~~g-w~~v~ii~d~~~g~~~~~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~--- 181 (823)
T 3kg2_A 108 LKGALLSLIEYYQ-WDKFAYLYDSDRGLSTLQAVLDSAAEKK--WQVTAINVGNINNDKKDETYRSLFQDLELKKER--- 181 (823)
T ss_dssp CHHHHHHHHHHTT-CSEEEEEECGGGCTHHHHHHHHHHHHTT--CEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCC---
T ss_pred HHHHHHHHHHHCC-CCEEEEEEeCChhHHHHHHHHHHhhccC--CceEEEEeecCCCCccchhHHHHHHHHHhcCCe---
Confidence 3444466666653 5899999976655557888999999988 665433222221112234556667777777777
Q ss_pred eEEEecCchHhhHHHHHHHHhhcC
Q 017815 100 TFVALGGGVIGDMCGYAAASYLRG 123 (365)
Q Consensus 100 ~IIaiGGGsv~D~ak~vA~~~~~g 123 (365)
+||..|.+ -+...++..+...|
T Consensus 182 vii~~~~~--~~~~~~~~~a~~~g 203 (823)
T 3kg2_A 182 RVILDCER--DKVNDIVDQVITIG 203 (823)
T ss_dssp EEEEECCH--HHHHHHHHHHHHHT
T ss_pred EEEEECCH--HHHHHHHHHHHHcC
Confidence 88877765 34555554444334
No 131
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=48.69 E-value=65 Score=28.33 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhhCCCCc---eEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhc
Q 017815 46 APLYLDKVTDALTRGNPNV---SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 122 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i---~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~ 122 (365)
+..+.+-+.+.+.+.| + ++.+...+. + .+.+...+.++.+.+.++| .||.+|... ..++. ....
T Consensus 16 ~~~i~~gi~~~l~~~g--y~g~~v~l~~~~~-~--~~~~~~~~~~~~l~~~~vD---gII~~~~~~----~~~~~-~~~~ 82 (295)
T 3lft_A 16 LDLIYKGIQDGLAEEG--YKDDQVKIDFMNS-E--GDQSKVATMSKQLVANGND---LVVGIATPA----AQGLA-SATK 82 (295)
T ss_dssp HHHHHHHHHHHHHHTT--CCGGGEEEEEEEC-T--TCHHHHHHHHHHHTTSSCS---EEEEESHHH----HHHHH-HHCS
T ss_pred HHHHHHHHHHHHHHcC--CCCCceEEEEecC-C--CCHHHHHHHHHHHHhcCCC---EEEECCcHH----HHHHH-HcCC
Confidence 3446777888899988 6 654433332 2 2556677888888888888 999987322 22222 2357
Q ss_pred CCcEEEecc
Q 017815 123 GVSFIQIPT 131 (365)
Q Consensus 123 g~p~i~IPT 131 (365)
++|+|.+-.
T Consensus 83 ~iPvV~~~~ 91 (295)
T 3lft_A 83 DLPVIMAAI 91 (295)
T ss_dssp SSCEEEESC
T ss_pred CCCEEEEec
Confidence 899998743
No 132
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=48.37 E-value=79 Score=28.84 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=46.0
Q ss_pred chhhhhccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceEE-EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~-~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
..++++.+ .+|+.++++...+.. ..+.+++.+++.| .++. ...++.+.. ++...+..+++.++| +|+
T Consensus 131 ~~~~~~~g-~k~vaii~~~~~~g~~~~~~~~~~~~~~g--~~vv~~~~~~~~~~-----d~~~~l~~i~~~~pd---~v~ 199 (371)
T 4f06_A 131 AKVAKQKG-ATKVAIAVSDYGPGIDAETAFKKTFEAEG--GKVVEAVRMPLSTT-----DFGPIMQRIKNSGAD---MIF 199 (371)
T ss_dssp HHHHHHTT-CCEEEEEEESSHHHHHHHHHHHHHHHHTT--CEEEEEEEECTTCC-----CCHHHHHHHHHHTCS---EEE
T ss_pred hhhhhhcC-ceEEEEEcCCcccchhHHHHHHHHHHhcC--CceEEEEecCcccc-----cHHHHHHHHHhcCCC---EEE
Confidence 45555553 688888887766544 6777888999888 6553 223444332 345566777888888 876
Q ss_pred Eec
Q 017815 103 ALG 105 (365)
Q Consensus 103 aiG 105 (365)
.+.
T Consensus 200 ~~~ 202 (371)
T 4f06_A 200 TFL 202 (371)
T ss_dssp EEC
T ss_pred EEe
Confidence 554
No 133
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=48.08 E-value=67 Score=23.75 Aligned_cols=76 Identities=18% Similarity=0.054 Sum_probs=45.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
++++||-|... ..+.+...|+..| +++. .+. +..++.+.+.+..+| +||- +.|..-.+
T Consensus 3 ~~ILivdd~~~---~~~~l~~~l~~~g--~~v~--~~~---------~~~~al~~l~~~~~d---lvllD~~~p~~~g~~ 63 (122)
T 3gl9_A 3 KKVLLVDDSAV---LRKIVSFNLKKEG--YEVI--EAE---------NGQIALEKLSEFTPD---LIVLXIMMPVMDGFT 63 (122)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES---------SHHHHHHHHTTBCCS---EEEECSCCSSSCHHH
T ss_pred ceEEEEeCCHH---HHHHHHHHHHHCC--cEEE--EeC---------CHHHHHHHHHhcCCC---EEEEeccCCCCcHHH
Confidence 57888887754 3445556677777 6643 332 234455566667777 6654 46777778
Q ss_pred HHHHHHHHh-hcCCcEEEe
Q 017815 112 MCGYAAASY-LRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~-~~g~p~i~I 129 (365)
+.+.+.... ...+|++.+
T Consensus 64 ~~~~l~~~~~~~~~pii~~ 82 (122)
T 3gl9_A 64 VLKKLQEKEEWKRIPVIVL 82 (122)
T ss_dssp HHHHHHTSTTTTTSCEEEE
T ss_pred HHHHHHhcccccCCCEEEE
Confidence 877663211 245777776
No 134
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=47.46 E-value=94 Score=26.87 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+.+.+.+.+.+.| +++. ++. .. .+.+...+..+.+.+.++| .||-++....-+..+. ....++|+
T Consensus 29 ~~~~~gi~~~a~~~g--~~~~--~~~-~~--~~~~~~~~~~~~~~~~~vd---giIi~~~~~~~~~~~~---l~~~~iPv 95 (292)
T 3k4h_A 29 PEVIRGISSFAHVEG--YALY--MST-GE--TEEEIFNGVVKMVQGRQIG---GIILLYSRENDRIIQY---LHEQNFPF 95 (292)
T ss_dssp HHHHHHHHHHHHHTT--CEEE--ECC-CC--SHHHHHHHHHHHHHTTCCC---EEEESCCBTTCHHHHH---HHHTTCCE
T ss_pred HHHHHHHHHHHHHcC--CEEE--EEe-CC--CCHHHHHHHHHHHHcCCCC---EEEEeCCCCChHHHHH---HHHCCCCE
Confidence 346677777888888 6543 332 22 2445567788888888888 8888776544343333 33579999
Q ss_pred EEeccc
Q 017815 127 IQIPTT 132 (365)
Q Consensus 127 i~IPTT 132 (365)
|.+-..
T Consensus 96 V~~~~~ 101 (292)
T 3k4h_A 96 VLIGKP 101 (292)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 998665
No 135
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=47.06 E-value=70 Score=26.23 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEEecCchHh--hHHHHH
Q 017815 46 APLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
.+.-...+.+.|.+.| +++..+ ++++ +.+.+.+.++.+.+ .++| +||--||=++. |+++-+
T Consensus 29 ~Dsn~~~l~~~L~~~G--~~v~~~~iv~D-----d~~~i~~~l~~~~~~~~~D---lVittGG~g~g~~D~t~ea 93 (169)
T 1y5e_A 29 TDKSGQLLHELLKEAG--HKVTSYEIVKD-----DKESIQQAVLAGYHKEDVD---VVLTNGGTGITKRDVTIEA 93 (169)
T ss_dssp TCHHHHHHHHHHHHHT--CEEEEEEEECS-----SHHHHHHHHHHHHTCTTCS---EEEEECCCSSSTTCCHHHH
T ss_pred ccChHHHHHHHHHHCC--CeEeEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEEcCCCCCCCCCCcHHH
Confidence 3445677788888888 665433 3443 45667766666554 2556 99999998776 777654
No 136
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=46.78 E-value=65 Score=27.73 Aligned_cols=97 Identities=10% Similarity=-0.018 Sum_probs=53.7
Q ss_pred ceEEEEEc-----cCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-C---------CCHHHHHHHHH--------HHH
Q 017815 35 KKVLVVTN-----NTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-Y---------KNMDTLMKVFD--------KAI 91 (365)
Q Consensus 35 ~~~livtd-----~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-~---------~~~~~v~~~~~--------~~~ 91 (365)
+|++|+.- ++....-.-...+.|..+| +++.++...++.. - .+...+.-..+ .+.
T Consensus 7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag--~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~ 84 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSG--AQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA 84 (232)
T ss_dssp CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTT--CEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCC--CEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHH
Confidence 57777766 6665542333445677888 8876655443321 0 11111111111 112
Q ss_pred HcCCCCcceEEEecCchH-----------------hhHHHHHHHHhhcCCcEEEecccc
Q 017815 92 ESRLDRRCTFVALGGGVI-----------------GDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 92 ~~~~dr~~~IIaiGGGsv-----------------~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+...+.-|.||--||-.. -++.+++...+.+|.++.+|+|..
T Consensus 85 ~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~ 143 (232)
T 1vhq_A 85 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP 143 (232)
T ss_dssp GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGG
T ss_pred HcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 212223458888888543 235667766778999999999985
No 137
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=46.41 E-value=1.6e+02 Score=26.35 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=58.3
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 19 g~iD~~~l~~lv~~li~~G--v~gl-~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~ 95 (294)
T 3b4u_A 19 GTVDIDAMIAHARRCLSNG--CDSV-TLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEAL 95 (294)
T ss_dssp SSBCHHHHHHHHHHHHHTT--CSEE-EESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHH
Confidence 3444445666666666777 5532 222 2356 356788888999998886555666999999988877777665555
Q ss_pred hcCCcEEEeccc
Q 017815 121 LRGVSFIQIPTT 132 (365)
Q Consensus 121 ~~g~p~i~IPTT 132 (365)
..|..-+.+.+-
T Consensus 96 ~~Gadavlv~~P 107 (294)
T 3b4u_A 96 NAGARNILLAPP 107 (294)
T ss_dssp HTTCSEEEECCC
T ss_pred hcCCCEEEEcCC
Confidence 678877776443
No 138
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=46.05 E-value=83 Score=25.79 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=49.9
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH-HHcCCCCcceEEEec----
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA-IESRLDRRCTFVALG---- 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~-~~~~~dr~~~IIaiG---- 105 (365)
+.|+.||..+--.. .+.+-..+.|.+.|..-++..+.+|+ .+| +--.++.+ +..++| .||++|
T Consensus 13 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPG-----afE-iP~aa~~la~~~~yD---avIaLG~VIr 83 (156)
T 1c2y_A 13 SFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPG-----AYE-LGVTAQALGKSGKYH---AIVCLGAVVK 83 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESS-----HHH-HHHHHHHHHHTTCCS---EEEEEEECCC
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCc-----HHH-HHHHHHHHHhcCCCC---EEEEeccccc
Confidence 45788887764333 35666667788887211344566665 344 33333444 445566 999999
Q ss_pred CchHhhHHHHHHH---------HhhcCCcEEEeccc
Q 017815 106 GGVIGDMCGYAAA---------SYLRGVSFIQIPTT 132 (365)
Q Consensus 106 GGsv~D~ak~vA~---------~~~~g~p~i~IPTT 132 (365)
|++..+ .|++. ....++|++.-=.|
T Consensus 84 G~T~Hf--d~Va~~v~~gl~~v~L~~~vPV~~GVLT 117 (156)
T 1c2y_A 84 GDTSHY--DAVVNSASSGVLSAGLNSGVPCVFGVLT 117 (156)
T ss_dssp CSSTHH--HHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CCchHH--HHHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 555433 22322 23467888774433
No 139
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=45.97 E-value=64 Score=26.80 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHh---hCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHh--hHHHHH
Q 017815 47 PLYLDKVTDALT---RGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 47 ~~~~~~v~~~L~---~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
+.-...+.+.|+ +.| +++...++++ +.+.+.+.++.+.+. ++| +||--||=++. |+++-+
T Consensus 24 Dsn~~~l~~~l~~l~~~G--~~v~~~iv~D-----d~~~I~~~l~~~~~~~~~D---lVittGG~g~g~~D~t~ea 89 (178)
T 2pbq_A 24 DISGKAIIDYLKDVIITP--FEVEYRVIPD-----ERDLIEKTLIELADEKGCS---LILTTGGTGPAPRDVTPEA 89 (178)
T ss_dssp CHHHHHHHHHHHHHBCSC--CEEEEEEECS-----CHHHHHHHHHHHHHTSCCS---EEEEESCCSSSTTCCHHHH
T ss_pred cchHHHHHHHHHHHHhCC--CEEEEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCCCCCCCCchHHH
Confidence 334556677666 888 6663334454 556777777766653 566 99999998776 776654
No 140
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=45.77 E-value=78 Score=23.52 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=45.2
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH-------cCCCCcceEEE---
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-------SRLDRRCTFVA--- 103 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~-------~~~dr~~~IIa--- 103 (365)
+.+++||.|... ..+.+.+.|...| +...+..+. + ..++.+.+.+ ..+| +||.
T Consensus 2 ~~~ilivdd~~~---~~~~l~~~L~~~~--~~~~v~~~~------~---~~~a~~~l~~~~~~~~~~~~d---lvi~d~~ 64 (140)
T 1k68_A 2 HKKIFLVEDNKA---DIRLIQEALANST--VPHEVVTVR------D---GMEAMAYLRQEGEYANASRPD---LILLXLN 64 (140)
T ss_dssp CCEEEEECCCHH---HHHHHHHHHHTCS--SCCEEEEEC------S---HHHHHHHHTTCGGGGSCCCCS---EEEECSS
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcC--CCceEEEEC------C---HHHHHHHHHcccccccCCCCc---EEEEecC
Confidence 457888877754 4456666777777 421223232 2 3444445554 4455 6653
Q ss_pred ecCchHhhHHHHHHHHh-hcCCcEEEec
Q 017815 104 LGGGVIGDMCGYAAASY-LRGVSFIQIP 130 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~-~~g~p~i~IP 130 (365)
+.+..-.++.+.+.... ...+|++.+-
T Consensus 65 ~~~~~g~~~~~~l~~~~~~~~~pii~ls 92 (140)
T 1k68_A 65 LPKKDGREVLAEIKSDPTLKRIPVVVLS 92 (140)
T ss_dssp CSSSCHHHHHHHHHHSTTGGGSCEEEEE
T ss_pred CCcccHHHHHHHHHcCcccccccEEEEe
Confidence 45666778887774322 1467777763
No 141
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=45.61 E-value=47 Score=27.30 Aligned_cols=86 Identities=20% Similarity=0.180 Sum_probs=46.1
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec--CchHhhHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--GGVIGDMC 113 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG--GGsv~D~a 113 (365)
|+.||..+.-.+.+.+--.+.|.+.|...++..+.+|+ .+|-=..+-..++..++| .||++| |++..+
T Consensus 4 ri~IV~arfn~~~Ll~gA~~~L~~~G~~~~i~~~~VPG-----afEiP~aak~la~~~~yD---avIaLG~VG~T~Hf-- 73 (156)
T 2b99_A 4 KVGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPG-----IKDLPVACKKLLEEEGCD---IVMALGMPGKAEKD-- 73 (156)
T ss_dssp EEEEEEESSCSSCCHHHHHHHHHHHCTTCEEEEEEESS-----GGGHHHHHHHHHHHSCCS---EEEEEECCCSSHHH--
T ss_pred EEEEEEEecchHHHHHHHHHHHHHcCCCCeEEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEecccCCcchh--
Confidence 56666655332334455566677666333433356665 333333333334456677 999998 444332
Q ss_pred HHHHHH---------hhcCCcEEEeccc
Q 017815 114 GYAAAS---------YLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~---------~~~g~p~i~IPTT 132 (365)
.|++.. ...++|++.. ||
T Consensus 74 d~Va~~vs~Gl~~v~L~~~vPV~~g-t~ 100 (156)
T 2b99_A 74 KVCAHEASLGLMLAQLMTNKHIIEV-FV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEE-EC
T ss_pred HHHHHHHHHHHHHHHhhhCCCEEEE-eC
Confidence 233322 3468888888 55
No 142
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=45.59 E-value=62 Score=27.34 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=52.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHH-HHHHcCCCCcceEEEecCc-hHh-
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD-KAIESRLDRRCTFVALGGG-VIG- 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~-~~~~~~~dr~~~IIaiGGG-sv~- 110 (365)
.+|+.|+.-++....-.-...+.|..+| +++.++...+..+-.+-..+.=..+ .+.+...+.-|.||-.||- ..-
T Consensus 9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 86 (208)
T 3ot1_A 9 SKRILVPVAHGSEEMETVIIVDTLVRAG--FQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQA 86 (208)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTT--CEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHH
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHHCC--CEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHH
Confidence 4678777777776654444566778888 8876554332122111000000000 0011111123488888884 333
Q ss_pred -----hHHHHHHHHhhcCCcEEEeccc
Q 017815 111 -----DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 111 -----D~ak~vA~~~~~g~p~i~IPTT 132 (365)
++.+++...+..+.++.+|+|.
T Consensus 87 l~~~~~l~~~l~~~~~~gk~i~aiC~G 113 (208)
T 3ot1_A 87 FADSTALLALIDAFSQQGKLVAAICAT 113 (208)
T ss_dssp HHTCHHHHHHHHHHHHTTCEEEEETTH
T ss_pred HhhCHHHHHHHHHHHHcCCEEEEEChh
Confidence 2445666667889999999987
No 143
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=45.40 E-value=1.7e+02 Score=26.18 Aligned_cols=85 Identities=12% Similarity=0.148 Sum_probs=49.0
Q ss_pred ceEEEEEc--c----CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch
Q 017815 35 KKVLVVTN--N----TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 35 ~~~livtd--~----~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
.++-+|++ . ..+..+.+-+.+.+++.| +++.+ +...+. +...+.++.+.+.++| .||.+|...
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g--~~~~~--~~~~~~----~~~~~~l~~l~~~~~d---gIi~~~~~~ 73 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENN--AKCKY--VTASTD----AEYVPSLSAFADENMG---LVVACGSFL 73 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTT--CEEEE--EECCSG----GGHHHHHHHHHHTTCS---EEEEESTTT
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhC--CeEEE--EeCCCH----HHHHHHHHHHHHcCCC---EEEECChhH
Confidence 45666664 2 223335566667777888 66533 322211 2234667778888888 999998654
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
. |....++. -..++|++.+-..
T Consensus 74 ~-~~~~~~a~-~~p~~p~v~id~~ 95 (318)
T 2fqx_A 74 V-EAVIETSA-RFPKQKFLVIDAV 95 (318)
T ss_dssp H-HHHHHHHH-HCTTSCEEEESSC
T ss_pred H-HHHHHHHH-HCCCCEEEEEcCc
Confidence 3 33333322 2248999998543
No 144
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=45.27 E-value=88 Score=28.60 Aligned_cols=96 Identities=7% Similarity=0.043 Sum_probs=55.3
Q ss_pred cchhhhhccCCceEEEEEccCchH-HHHHHHHHHHhhCCCCceE---------------------E-EEEeCCCCCCCCH
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSV---------------------E-NVILPDGENYKNM 80 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~i~v---------------------~-~~~~~~~e~~~~~ 80 (365)
..++++.++ -+++.+|++..-+- ...+.+.+.+++.| .++ . +..++ ++.
T Consensus 130 ~~~~~~~~g-w~~v~ii~~d~~~G~~~~~~~~~~~~~~g--~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~-----~~~ 201 (384)
T 3qek_A 130 WFEMMRLFN-WNHVILIVSDDHEGRAAQKKLETLLEGKE--SKSKKRNYENLDQLSYDNKRGPKADKVLQFE-----PGT 201 (384)
T ss_dssp HHHHHHHTT-CCEEEEEEESSHHHHHHHHHHHHHHC----------------CCSCCCCCCCCEEEEEEEEC-----TTC
T ss_pred HHHHHHHcC-CeEEEEEEEcCcccHHHHHHHHHHHHhcc--CccccccccccceeeeccccCcccceecccC-----Cch
Confidence 355665553 58888888766443 36778888888877 432 1 11111 122
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc---EEEeccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS---FIQIPTT 132 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p---~i~IPTT 132 (365)
.++...+..+++.+++ +||..|.+ -|+..++..+...|+. ++-|-|.
T Consensus 202 ~d~~~~l~~i~~~~~~---vii~~~~~--~~~~~~~~~a~~~g~~~~~~~~i~~~ 251 (384)
T 3qek_A 202 KNLTALLLEAKELEAR---VIILSASE--DDATAVYKSAAMLDMTGAGYVWLVGE 251 (384)
T ss_dssp SCCHHHHHHHHTSSCC---EEEEECCH--HHHHHHHHHHHHTTCSSTTCEEECCS
T ss_pred hhHHHHHHHHHhcCCc---EEEEECCH--HHHHHHHHHHHHcCCccCCeEEEEec
Confidence 3566667777887877 88887754 4666666555555554 6666666
No 145
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=44.88 E-value=1.1e+02 Score=25.18 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=46.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCc-eEEEEEeCCCCCCCCHHHHHHHHHHHHHc-------------CCCCcc
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKAIES-------------RLDRRC 99 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i-~v~~~~~~~~e~~~~~~~v~~~~~~~~~~-------------~~dr~~ 99 (365)
+.++|||-|... ..+.+.+.|...| + .+ ..+. +.+.. ++.+.+. .+|
T Consensus 61 ~~~ILiVdDd~~---~~~~l~~~L~~~g--~~~v--~~a~------~~~ea---l~~l~~~~~~~~~~~~~~~~~~d--- 121 (206)
T 3mm4_A 61 GKRVLVVDDNFI---SRKVATGKLKKMG--VSEV--EQCD------SGKEA---LRLVTEGLTQREEQGSVDKLPFD--- 121 (206)
T ss_dssp TCEEEEECSCHH---HHHHHHHHHHHTT--CSEE--EEES------SHHHH---HHHHHHHHHHHHHHTCSSCCSCS---
T ss_pred CCEEEEEeCCHH---HHHHHHHHHHHcC--CCee--eeeC------CHHHH---HHHHHhhcccccccccccCCCCC---
Confidence 467888888754 3445556677777 5 33 2333 23333 3333332 455
Q ss_pred eEEE---ecCchHhhHHHHHHHH---hhcCCcEEEecc
Q 017815 100 TFVA---LGGGVIGDMCGYAAAS---YLRGVSFIQIPT 131 (365)
Q Consensus 100 ~IIa---iGGGsv~D~ak~vA~~---~~~g~p~i~IPT 131 (365)
+||. +.+..-+++++.+... ....+|+|.+-.
T Consensus 122 lillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 122 YIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred EEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 7664 5677788888877543 135678887743
No 146
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=44.80 E-value=76 Score=23.91 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=43.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE--ecCchHhh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA--LGGGVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa--iGGGsv~D 111 (365)
..+++||.|... ..+.+.+.|...| +++. .+. +..++.+.+.+..+| +||. +.+....+
T Consensus 4 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v~--~~~---------~~~~a~~~l~~~~~d---lvi~d~~~~~~g~~ 64 (142)
T 2qxy_A 4 TPTVMVVDESRI---TFLAVKNALEKDG--FNVI--WAK---------NEQEAFTFLRREKID---LVFVDVFEGEESLN 64 (142)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHGGGT--CEEE--EES---------SHHHHHHHHTTSCCS---EEEEECTTTHHHHH
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHhCC--CEEE--EEC---------CHHHHHHHHhccCCC---EEEEeCCCCCcHHH
Confidence 357888877654 4556666777777 6543 222 234455555666666 5543 24445566
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+.+.+... ...+|++.+
T Consensus 65 ~~~~l~~~-~~~~pii~l 81 (142)
T 2qxy_A 65 LIRRIREE-FPDTKVAVL 81 (142)
T ss_dssp HHHHHHHH-CTTCEEEEE
T ss_pred HHHHHHHH-CCCCCEEEE
Confidence 66655432 246777766
No 147
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=44.74 E-value=96 Score=24.05 Aligned_cols=76 Identities=12% Similarity=0.010 Sum_probs=45.8
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc--CCCCcceEEE---ecCchH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES--RLDRRCTFVA---LGGGVI 109 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~--~~dr~~~IIa---iGGGsv 109 (365)
.+++||.|... ..+.+.+.|.+.| +++. ..+. +..++.+.+.+. .+| +||. +.+..-
T Consensus 37 ~~Ilivdd~~~---~~~~l~~~L~~~g--~~v~-~~~~---------~~~~al~~l~~~~~~~d---liilD~~l~~~~g 98 (157)
T 3hzh_A 37 FNVLIVDDSVF---TVKQLTQIFTSEG--FNII-DTAA---------DGEEAVIKYKNHYPNID---IVTLXITMPKMDG 98 (157)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE-EEES---------SHHHHHHHHHHHGGGCC---EEEECSSCSSSCH
T ss_pred eEEEEEeCCHH---HHHHHHHHHHhCC--CeEE-EEEC---------CHHHHHHHHHhcCCCCC---EEEEeccCCCccH
Confidence 36777777654 3455666677777 6542 1233 234444555555 556 6664 567788
Q ss_pred hhHHHHHHHHhhcCCcEEEe
Q 017815 110 GDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~I 129 (365)
+++.+.+... ...+|+|.+
T Consensus 99 ~~~~~~lr~~-~~~~~ii~l 117 (157)
T 3hzh_A 99 ITCLSNIMEF-DKNARVIMI 117 (157)
T ss_dssp HHHHHHHHHH-CTTCCEEEE
T ss_pred HHHHHHHHhh-CCCCcEEEE
Confidence 8888877532 356777766
No 148
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=44.72 E-value=59 Score=24.79 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=43.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|..... +.+.+.|...| +++. .+. + ..++.+.+.+..+| +||. +.+....
T Consensus 8 ~~~iLivd~~~~~~---~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---lii~d~~l~~~~g~ 68 (147)
T 2zay_A 8 WWRIMLVDTQLPAL---AASISALSQEG--FDII--QCG------N---AIEAVPVAVKTHPH---LIITEANMPKISGM 68 (147)
T ss_dssp CEEEEEECTTGGGG---HHHHHHHHHHT--EEEE--EES------S---HHHHHHHHHHHCCS---EEEEESCCSSSCHH
T ss_pred CceEEEEeCCHHHH---HHHHHHHHHcC--CeEE--EeC------C---HHHHHHHHHcCCCC---EEEEcCCCCCCCHH
Confidence 45788887776533 33444455556 5543 232 3 33444555566676 6653 4566677
Q ss_pred hHHHHHHHH-hhcCCcEEEe
Q 017815 111 DMCGYAAAS-YLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~-~~~g~p~i~I 129 (365)
++++.+... ....+|+|.+
T Consensus 69 ~~~~~l~~~~~~~~~pii~l 88 (147)
T 2zay_A 69 DLFNSLKKNPQTASIPVIAL 88 (147)
T ss_dssp HHHHHHHTSTTTTTSCEEEE
T ss_pred HHHHHHHcCcccCCCCEEEE
Confidence 888766321 2346777776
No 149
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=44.30 E-value=94 Score=23.87 Aligned_cols=76 Identities=9% Similarity=0.111 Sum_probs=46.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|... ..+.+.+.|...| +++. .+. + ..++.+.+.+..+| +||. +.+....
T Consensus 7 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---lvi~d~~l~~~~g~ 67 (154)
T 2rjn_A 7 NYTVMLVDDEQP---ILNSLKRLIKRLG--CNII--TFT------S---PLDALEALKGTSVQ---LVISDMRMPEMGGE 67 (154)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHTTT--CEEE--EES------C---HHHHHHHHTTSCCS---EEEEESSCSSSCHH
T ss_pred CCeEEEEcCCHH---HHHHHHHHHHHcC--CeEE--EeC------C---HHHHHHHHhcCCCC---EEEEecCCCCCCHH
Confidence 457888877754 4556666777777 6543 232 2 34445555566666 6653 4566777
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++++.+... ...+|+|.+
T Consensus 68 ~~~~~l~~~-~~~~~ii~l 85 (154)
T 2rjn_A 68 VFLEQVAKS-YPDIERVVI 85 (154)
T ss_dssp HHHHHHHHH-CTTSEEEEE
T ss_pred HHHHHHHHh-CCCCcEEEE
Confidence 888777532 346777766
No 150
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=44.15 E-value=1e+02 Score=27.12 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=53.7
Q ss_pred hhhhhcc-CCceEEEEEccCch--HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 26 CLYYRHV-QGKKVLVVTNNTVA--PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 26 ~~l~~~~-~~~~~livtd~~~~--~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
+++.++. +.+|+.+++++... ..-.+.+++.+++.| +++....+. +.+...+.++.+.+ ++| .|+
T Consensus 131 ~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~g--i~~~~~~~~------~~~~~~~~~~~l~~-~~d---ai~ 198 (302)
T 2qh8_A 131 ELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHG--IKLVEATAL------KSADVQSATQAIAE-KSD---VIY 198 (302)
T ss_dssp HHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT--CEEEEEECS------SGGGHHHHHHHHGG-GCS---EEE
T ss_pred HHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcC--CEEEEEecC------ChHHHHHHHHHHhc-cCC---EEE
Confidence 5666652 36899999988642 224566777888888 765433222 23445555555542 455 999
Q ss_pred EecCchHhhHHHHHH-HHhhcCCcEEE
Q 017815 103 ALGGGVIGDMCGYAA-ASYLRGVSFIQ 128 (365)
Q Consensus 103 aiGGGsv~D~ak~vA-~~~~~g~p~i~ 128 (365)
+.....++...+.+. .....++|++.
T Consensus 199 ~~~D~~a~g~~~~l~~~~~~~~i~vig 225 (302)
T 2qh8_A 199 ALIDNTVASAIEGMIVAANQAKTPVFG 225 (302)
T ss_dssp ECSCHHHHTTHHHHHHHHHHTTCCEEE
T ss_pred ECCcHhHHHHHHHHHHHHHHcCCCEEE
Confidence 987777665444332 12335666554
No 151
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=43.64 E-value=34 Score=27.91 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=49.8
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 115 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~ 115 (365)
|+.|-+|..-++ +.+.|.+.|++.| ++|.-+--...++.--.+...++.+.+.+..+|| .|+-=|-|.=+-+
T Consensus 3 kIaigsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~si--- 74 (149)
T 2vvr_A 3 KIAFGCDHVGFI-LKHEIVAHLVERG--VEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG--GILICGTGVGISI--- 74 (149)
T ss_dssp EEEEEECTTGGG-GHHHHHHHHHHTT--CEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHH---
T ss_pred EEEEEeCchhHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCce--EEEEeCCcHHHHH---
Confidence 577788887555 5788999999999 7764431112222222344556666666666674 3333333332222
Q ss_pred HHHHhhcCCcEEEeccc
Q 017815 116 AAASYLRGVSFIQIPTT 132 (365)
Q Consensus 116 vA~~~~~g~p~i~IPTT 132 (365)
|+--..|++...+-.+
T Consensus 75 -aANKv~GIRAal~~d~ 90 (149)
T 2vvr_A 75 -AANKFAGIRAVVCSEP 90 (149)
T ss_dssp -HHHTSTTCCEEECSSH
T ss_pred -HHhcCCCeEEEEeCCH
Confidence 2223468877776554
No 152
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=43.51 E-value=1e+02 Score=26.95 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+.+.| +.+ ..+. .. .+.+.-.+..+.+.+.++| .||-++....-+..+. ....++|
T Consensus 27 ~~~~~~gi~~~a~~~g--~~~--~~~~-~~--~~~~~~~~~~~~l~~~~vd---GiI~~~~~~~~~~~~~---l~~~~iP 93 (295)
T 3hcw_A 27 YINVLLGISETCNQHG--YGT--QTTV-SN--NMNDLMDEVYKMIKQRMVD---AFILLYSKENDPIKQM---LIDESMP 93 (295)
T ss_dssp HHHHHHHHHHHHHTTT--CEE--EECC-CC--SHHHHHHHHHHHHHTTCCS---EEEESCCCTTCHHHHH---HHHTTCC
T ss_pred HHHHHHHHHHHHHHCC--CEE--EEEc-CC--CChHHHHHHHHHHHhCCcC---EEEEcCcccChHHHHH---HHhCCCC
Confidence 3446777788888888 664 3333 22 2445566778888888888 8888765543333332 2357999
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
+|.+-..
T Consensus 94 vV~i~~~ 100 (295)
T 3hcw_A 94 FIVIGKP 100 (295)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9998665
No 153
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=43.29 E-value=1.6e+02 Score=25.37 Aligned_cols=84 Identities=7% Similarity=0.037 Sum_probs=50.7
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+-+.+.+++.| +++.+ +.. . .+.+.-.+.++.+.+.++| .||..+....-+
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~--~~~-~--~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~ 78 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNG--YRILL--CNT-E--SDLARSRSCLTLLSGKMVD---GVITMDALSELP 78 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTT--CEEEE--EEC-T--TCHHHHHHHTHHHHTTCCS---EEEECCCGGGHH
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcC--CEEEE--EeC-C--CCHHHHHHHHHHHHhCCCC---EEEEeCCCCChH
Confidence 4555555421 23335666777788888 66543 222 1 2445556677778888888 888877644323
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
..+. .. .++|+|.+-..
T Consensus 79 ~~~~---l~-~~iPvV~~~~~ 95 (285)
T 3c3k_A 79 ELQN---II-GAFPWVQCAEY 95 (285)
T ss_dssp HHHH---HH-TTSSEEEESSC
T ss_pred HHHH---Hh-cCCCEEEEccc
Confidence 3222 23 79999998655
No 154
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=43.17 E-value=35 Score=29.96 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH-HHHHHHh-hcCCcEEEecccc
Q 017815 79 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC-GYAAASY-LRGVSFIQIPTTV 133 (365)
Q Consensus 79 ~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a-k~vA~~~-~~g~p~i~IPTTl 133 (365)
+-++..+.+....-. .=++..+||+|.||+.... ..++... ..++.+..|||+.
T Consensus 3 ~qd~~K~~aa~~A~~-~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l~i~~V~tS~ 58 (228)
T 4gmk_A 3 NQDELKQLVGTKAVE-WIKDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSI 58 (228)
T ss_dssp HHHHHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEESSH
T ss_pred CHHHHHHHHHHHHHH-hCCCCCEEEECchHHHHHHHHHHHHHHhhcCCcEEEEeCcH
Confidence 344444444332221 2345699999999976643 2222111 2478899999985
No 155
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=42.96 E-value=84 Score=22.81 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=44.9
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ec-CchHh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LG-GGVIG 110 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iG-GGsv~ 110 (365)
.+++||.|... ..+.+.+.|...| +++. .+. +. .+..+.+.+..+| +||. +. +....
T Consensus 6 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~~---~~a~~~~~~~~~d---lvi~d~~~~~~~~g~ 66 (127)
T 2gkg_A 6 KKILIVESDTA---LSATLRSALEGRG--FTVD--ETT------DG---KGSVEQIRRDRPD---LVVLAVDLSAGQNGY 66 (127)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHHT--CEEE--EEC------CH---HHHHHHHHHHCCS---EEEEESBCGGGCBHH
T ss_pred CeEEEEeCCHH---HHHHHHHHHHhcC--ceEE--Eec------CH---HHHHHHHHhcCCC---EEEEeCCCCCCCCHH
Confidence 47888877654 3455555666666 5542 222 33 3344455556666 6653 23 55667
Q ss_pred hHHHHHHHHh-hcCCcEEEeccc
Q 017815 111 DMCGYAAASY-LRGVSFIQIPTT 132 (365)
Q Consensus 111 D~ak~vA~~~-~~g~p~i~IPTT 132 (365)
++.+.+.... ...+|++.+ ..
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~-~~ 88 (127)
T 2gkg_A 67 LICGKLKKDDDLKNVPIVII-GN 88 (127)
T ss_dssp HHHHHHHHSTTTTTSCEEEE-EC
T ss_pred HHHHHHhcCccccCCCEEEE-ec
Confidence 7777764321 357888888 44
No 156
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=42.82 E-value=1.5e+02 Score=25.98 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+-+.+.+++.| +++.++ .. ..+.+.-.+.++.+...++| .||-.+..... ....+......|+
T Consensus 16 ~~~~~~~gi~~~a~~~g--~~~~~~--~~---~~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~-~~~~~~~~~~~~i 84 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLG--AKVFVQ--SA---NGNEETQMSQIENMINRGVD---VLVIIPYNGQV-LSNVVKEAKQEGI 84 (313)
T ss_dssp TTHHHHHHHHHHHHHTS--CEEEEE--EC---TTCHHHHHHHHHHHHHTTCS---EEEEECSSTTS-CHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHcC--CEEEEE--CC---CCCHHHHHHHHHHHHHcCCC---EEEEeCCChhh-hHHHHHHHHHCCC
Confidence 45557788888899988 665433 22 22556667778888888888 88877754331 1122322345799
Q ss_pred cEEEecccc
Q 017815 125 SFIQIPTTV 133 (365)
Q Consensus 125 p~i~IPTTl 133 (365)
|+|.+-+..
T Consensus 85 PvV~~~~~~ 93 (313)
T 3m9w_A 85 KVLAYDRMI 93 (313)
T ss_dssp EEEEESSCC
T ss_pred eEEEECCcC
Confidence 999997663
No 157
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=42.73 E-value=86 Score=23.53 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=45.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|... ..+.+.+.|...| +++. .+. + ..++.+.+.+..+| +||. +.+..-.
T Consensus 7 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---lii~d~~l~~~~g~ 67 (142)
T 3cg4_A 7 KGDVMIVDDDAH---VRIAVKTILSDAG--FHII--SAD------S---GGQCIDLLKKGFSG---VVLLDIMMPGMDGW 67 (142)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHTCCCE---EEEEESCCSSSCHH
T ss_pred CCeEEEEcCCHH---HHHHHHHHHHHCC--eEEE--EeC------C---HHHHHHHHHhcCCC---EEEEeCCCCCCCHH
Confidence 457787777654 4555666677777 6542 222 2 34455555666666 6653 3566777
Q ss_pred hHHHHHHHH-hhcCCcEEEe
Q 017815 111 DMCGYAAAS-YLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~-~~~g~p~i~I 129 (365)
++.+.+... ....+|+|.+
T Consensus 68 ~~~~~l~~~~~~~~~pii~~ 87 (142)
T 3cg4_A 68 DTIRAILDNSLEQGIAIVML 87 (142)
T ss_dssp HHHHHHHHTTCCTTEEEEEE
T ss_pred HHHHHHHhhcccCCCCEEEE
Confidence 888776431 2245677766
No 158
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=42.00 E-value=1.4e+02 Score=25.56 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=51.2
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+.+.+.+.+.| +++.++ .. +.+.+.-.+.++.+...++| .||-.+ ..-+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~--~~---~~~~~~~~~~~~~l~~~~~d---giIi~~--~~~~ 76 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHG--YQVLIG--NS---DNDIKKAQGYLATFVSHNCT---GMISTA--FNEN 76 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTT--CCEEEE--EC---TTCHHHHHHHHHHHHHTTCS---EEEECG--GGHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEE--eC---CCCHHHHHHHHHHHHhCCCC---EEEEec--CChH
Confidence 3455554431 23346777777888888 665433 22 12556667788888888998 888877 2222
Q ss_pred HHHHHH-HHhhcCCcEEEecccc
Q 017815 112 MCGYAA-ASYLRGVSFIQIPTTV 133 (365)
Q Consensus 112 ~ak~vA-~~~~~g~p~i~IPTTl 133 (365)
. +. .....++|+|.+-...
T Consensus 77 ~---~~~~l~~~~iPvV~~~~~~ 96 (277)
T 3e61_A 77 I---IENTLTDHHIPFVFIDRIN 96 (277)
T ss_dssp H---HHHHHHHC-CCEEEGGGCC
T ss_pred H---HHHHHHcCCCCEEEEeccC
Confidence 2 22 2345799999987663
No 159
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=41.94 E-value=1.2e+02 Score=27.44 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.+.+.-..|--+|+++|+.++-|+...+..+..
T Consensus 32 ~iD~~~l~~lv~~li~~G--v~gi-~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~ 108 (304)
T 3l21_A 32 SLDTATAARLANHLVDQG--CDGL-VVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAA 108 (304)
T ss_dssp CBCHHHHHHHHHHHHHTT--CSEE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcC--CCEE-EeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence 444445666677777778 5532 333 3366 3457788888888888754455569999999999888887766666
Q ss_pred cCCcEEEecc
Q 017815 122 RGVSFIQIPT 131 (365)
Q Consensus 122 ~g~p~i~IPT 131 (365)
.|..-+.+-+
T Consensus 109 ~Gadavlv~~ 118 (304)
T 3l21_A 109 EGAHGLLVVT 118 (304)
T ss_dssp HTCSEEEEEC
T ss_pred cCCCEEEECC
Confidence 7877666543
No 160
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=41.86 E-value=1.7e+02 Score=25.16 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=54.0
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH--
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI-- 109 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv-- 109 (365)
+++-++.... .+..+.+.+.+.+.+.| +++.++ .. +.+.+.-.+.++.+.+.++| .||-.+..+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~---~~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQG--YSMLLT--ST---NNNPDNERRGLENLLSQHID---GLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTT--CEEEEE--EC---TTCHHHHHHHHHHHHHTCCS---EEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCC--CEEEEE--eC---CCChHHHHHHHHHHHHCCCC---EEEEeccccccc
Confidence 4555554432 34447777888888888 765433 22 12556667788888888998 8888776432
Q ss_pred ---hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 ---GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ---~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.+..+. ....++|+|.+-..
T Consensus 86 ~~~~~~~~~---~~~~~iPvV~~~~~ 108 (298)
T 3tb6_A 86 TPNIGYYLN---LEKNGIPFAMINAS 108 (298)
T ss_dssp CTTHHHHHH---HHHTTCCEEEESSC
T ss_pred CCcHHHHHH---HHhcCCCEEEEecC
Confidence 233332 23579999998665
No 161
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=41.85 E-value=38 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=29.0
Q ss_pred ceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCC
Q 017815 35 KKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPD 73 (365)
Q Consensus 35 ~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~ 73 (365)
+|++++++.++... +.+++.+.+++.| +++.+..++-
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~g--i~~~i~a~~~ 41 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYE--VPVIIEAFPE 41 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSC--CSEEEEEECS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCC--CCeEEEEecH
Confidence 68999999987665 7889999999999 6665554443
No 162
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.59 E-value=91 Score=25.13 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=48.4
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||-|... ..+.+...|...| +.+ ..+. +..++.+.+.+..+| +||- +.|+.-+
T Consensus 7 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v--~~~~---------~~~~al~~~~~~~~d---lvl~D~~lp~~~g~ 67 (184)
T 3rqi_A 7 DKNFLVIDDNEV---FAGTLARGLERRG--YAV--RQAH---------NKDEALKLAGAEKFE---FITVXLHLGNDSGL 67 (184)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEEC---------SHHHHHHHHTTSCCS---EEEECSEETTEESH
T ss_pred CCeEEEEcCCHH---HHHHHHHHHHHCC--CEE--EEeC---------CHHHHHHHHhhCCCC---EEEEeccCCCccHH
Confidence 457888888764 3445556676777 654 2333 234445556666677 7764 6788889
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++++.+... ...+|+|.+
T Consensus 68 ~~~~~l~~~-~~~~~ii~l 85 (184)
T 3rqi_A 68 SLIAPLCDL-QPDARILVL 85 (184)
T ss_dssp HHHHHHHHH-CTTCEEEEE
T ss_pred HHHHHHHhc-CCCCCEEEE
Confidence 999887543 346777766
No 163
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=41.57 E-value=69 Score=27.80 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=40.3
Q ss_pred eEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017815 36 KVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 92 (365)
Q Consensus 36 ~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~ 92 (365)
.++++.+. .+.-...++..+.|++.| +++.+..+++..+.-+.++++.+.+++++
T Consensus 185 Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g--~~v~~~~y~g~gH~i~~~~l~~~~~fL~k 242 (246)
T 4f21_A 185 PILVCHGTDDQVLPEVLGHDLSDKLKVSG--FANEYKHYVGMQHSVCMEEIKDISNFIAK 242 (246)
T ss_dssp CEEEEEETTCSSSCHHHHHHHHHHHHTTT--CCEEEEEESSCCSSCCHHHHHHHHHHHHH
T ss_pred chhhcccCCCCccCHHHHHHHHHHHHHCC--CCeEEEEECCCCCccCHHHHHHHHHHHHH
Confidence 57777653 344447888888999988 77777777765566678888888888765
No 164
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=41.49 E-value=25 Score=29.34 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=52.2
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH----HHHHHHHHHcCCCCcceEEEecC-ch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL----MKVFDKAIESRLDRRCTFVALGG-GV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v----~~~~~~~~~~~~dr~~~IIaiGG-Gs 108 (365)
.+|++|+.-++....-.-...+.|..+| +++.++...++.+..+...+ +...+.+....+| .||-.|| +.
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D---~livpGG~~~ 79 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAG--IKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFD---VVVLPGGLGG 79 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTT--CEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCS---EEEECCCHHH
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCC--CEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCC---EEEECCCChH
Confidence 4677777777766553444556778888 77765544331221110000 0000111112334 8888888 43
Q ss_pred Hh------hHHHHHHHHhhcCCcEEEecccc
Q 017815 109 IG------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 109 v~------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.- ++.+++...+..+.++.+|+|..
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~ 110 (190)
T 4e08_A 80 SNAMGESSLVGDLLRSQESGGGLIAAICAAP 110 (190)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCEEEEETTTH
T ss_pred HHHhhhCHHHHHHHHHHHHCCCEEEEECHHH
Confidence 32 34455555677899999999974
No 165
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=41.48 E-value=33 Score=28.88 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=53.0
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhh--CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~--~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
-|+.|-+|..-++ +.+.|.+.|++ .| ++|.-+--...++..-.+...++++.+.+..+||. |+-=|-|.=+-+
T Consensus 23 MkIaIgsDhaG~~-lK~~i~~~L~~~~~G--~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~G--IliCGTGiG~sI 97 (179)
T 3k7p_A 23 RRVAIGTDHPAFA-IHENLILYVKEAGDE--FVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFG--VLAAGSGIGMSI 97 (179)
T ss_dssp EEEEEEECTGGGG-GHHHHHHHHHHTCTT--EEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEE--EEEESSSHHHHH
T ss_pred eEEEEEECchHHH-HHHHHHHHHHhcCCC--CeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEE--EEEccCcHHHhh
Confidence 3788889987665 58889999998 88 76643321222222233556677777777777753 333343432222
Q ss_pred HHHHHHHhhcCCcEEEecccc
Q 017815 113 CGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPTTl 133 (365)
|+--..|++...+-.+.
T Consensus 98 ----aANKv~GIRAAlc~d~~ 114 (179)
T 3k7p_A 98 ----AANKVPGVRAALCHDHY 114 (179)
T ss_dssp ----HHHTSTTCCEEECCSHH
T ss_pred ----HhhcCCCeEEEEeCCHH
Confidence 22234688877765553
No 166
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=41.27 E-value=1.7e+02 Score=25.09 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=52.9
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+.+.+.+++.| +++.++ .. ..+.+.-.+.++.+...++| .||-.+......
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~---~~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~ 75 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLG--GTAIAL--DA---GRNDQTQVSQIQTLIAQKPD---AIIEQLGNLDVL 75 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTT--CEEEEE--EC---TTCHHHHHHHHHHHHHHCCS---EEEEESSCHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcC--CEEEEE--cC---CCCHHHHHHHHHHHHHcCCC---EEEEeCCChhhh
Confidence 4555554432 22336677788888888 665433 22 12456667778888888998 888776542211
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
...+......|+|+|.+-..
T Consensus 76 -~~~~~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 76 -NPWLQKINDAGIPLFTVDTA 95 (291)
T ss_dssp -HHHHHHHHHTTCCEEEESCC
T ss_pred -HHHHHHHHHCCCcEEEecCC
Confidence 12222234579999999665
No 167
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=41.15 E-value=66 Score=29.59 Aligned_cols=90 Identities=6% Similarity=0.026 Sum_probs=52.0
Q ss_pred ecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 21 LISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 21 ~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
+....++++.++ -+++.+|++..-+-...+.+.+.+.+.| ..+....++ + .. ++...+..+++.+++ +
T Consensus 127 ~~~~~~~~~~~g-~~~vaii~~~~~~g~~l~~~~~~~~~~g--~~v~~~~~~-~--~~---d~~~~l~~i~~~~~~---v 194 (393)
T 3om0_A 127 SLAVSRILKSFN-YPSASLICAKAECLLRLEELVRGFLISK--ETLSVRMLD-D--SR---DPTPLLKEIRDDKVS---T 194 (393)
T ss_dssp HHHHHHHHHHTT-SCCEEEEESSTTHHHHTHHHHHHHHHSS--SCEEEEECC----CC---CSHHHHHHHHHHTCS---E
T ss_pred HHHHHHHHHhCC-CcEEEEEEeCchHHHHHHHHHHhhhccC--CeEEEEecC-C--CC---CHHHHHHHHHhcCCe---E
Confidence 333456666653 5899999987765443334444455667 555333332 2 22 345566677777888 8
Q ss_pred EEEecCchHhhHHHHHHHHhhcCC
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
||..|.+ -|++.++..+...|+
T Consensus 195 ii~~~~~--~~~~~~~~~a~~~g~ 216 (393)
T 3om0_A 195 IIIDANA--SISHLVLRKASELGM 216 (393)
T ss_dssp EEEESCH--HHHHHHHHHHHHTTT
T ss_pred EEEECCH--HHHHHHHHHHHHcCc
Confidence 8876654 466666655554553
No 168
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=41.15 E-value=1.2e+02 Score=24.80 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=49.9
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCC-ceEEEEEeCCCCCCCCHHHHHHHHHHH-HHcCCCCcceEEEec---
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKA-IESRLDRRCTFVALG--- 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~-i~v~~~~~~~~e~~~~~~~v~~~~~~~-~~~~~dr~~~IIaiG--- 105 (365)
+.|+.||..+.-.. .+.+--.+.|.+.|.. -++..+.+|+ .+|- --.++.+ +..++| .||++|
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPG-----afEi-P~aa~~la~~~~yD---avIaLG~VI 82 (154)
T 1rvv_A 12 GLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPG-----AFEI-PFAAKKMAETKKYD---AIITLGTVI 82 (154)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESS-----GGGH-HHHHHHHHHTSCCS---EEEEEEEEE
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHH-HHHHHHHHhcCCCC---EEEEeeeee
Confidence 45788887765333 3556666778887732 1345666776 3332 2233333 445666 999999
Q ss_pred -CchHhhHHHHHHH---------HhhcCCcEEEeccc
Q 017815 106 -GGVIGDMCGYAAA---------SYLRGVSFIQIPTT 132 (365)
Q Consensus 106 -GGsv~D~ak~vA~---------~~~~g~p~i~IPTT 132 (365)
|++..+ .|++. ....++|++.-=.|
T Consensus 83 rG~T~Hf--d~V~~~vs~Gl~~v~l~~~vPV~~GVLT 117 (154)
T 1rvv_A 83 RGATTHY--DYVCNEAAKGIAQAANTTGVPVIFGIVT 117 (154)
T ss_dssp CCSSSHH--HHHHHHHHHHHHHHHHHHCSCEEEEEEE
T ss_pred cCCchHH--HHHHHHHHHHHHHHHhhhCCCEEEEecC
Confidence 565443 22332 23468888875333
No 169
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=41.11 E-value=1.1e+02 Score=22.94 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=46.8
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||-|... ..+.+...|...| +++. .+. +..++.+.+.+..+| +||- +.|..-+
T Consensus 4 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v~--~~~---------~~~~al~~~~~~~~d---lvl~D~~lp~~~g~ 64 (136)
T 3t6k_A 4 PHTLLIVDDDDT---VAEMLELVLRGAG--YEVR--RAA---------SGEEALQQIYKNLPD---ALICDVLLPGIDGY 64 (136)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES---------SHHHHHHHHHHSCCS---EEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHH---HHHHHHHHHHHCC--CEEE--EeC---------CHHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 357788877654 3445566677777 6543 232 234445566677777 6653 4677778
Q ss_pred hHHHHHHHH-hhcCCcEEEe
Q 017815 111 DMCGYAAAS-YLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~-~~~g~p~i~I 129 (365)
++++.+... ....+|++.+
T Consensus 65 ~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 65 TLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp HHHHHHHHSGGGTTCCEEEE
T ss_pred HHHHHHHcCCCcCCccEEEE
Confidence 888777432 2346787776
No 170
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=40.98 E-value=89 Score=25.64 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=47.5
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCCc-eEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec----
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG---- 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~i-~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG---- 105 (365)
+.|+.||..+.-.. .+.+--.+.|++.|... ++.++.+|+ .+|-=..+-..++..++| .||++|
T Consensus 11 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPG-----afEiP~aa~~la~~~~yD---avIaLG~VIr 82 (157)
T 2obx_A 11 TVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPG-----AYEIPLHARTLAETGRYG---AVLGTAFVVN 82 (157)
T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESS-----GGGHHHHHHHHHHHTCCS---EEEEEEECCC
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEeecccc
Confidence 45788887765333 35555566676666211 355666776 333222222333456677 999999
Q ss_pred CchHhh------HHHHHH-HHhhcCCcEEEec
Q 017815 106 GGVIGD------MCGYAA-ASYLRGVSFIQIP 130 (365)
Q Consensus 106 GGsv~D------~ak~vA-~~~~~g~p~i~IP 130 (365)
|++..+ +++.+. .....++|++.-=
T Consensus 83 G~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~GV 114 (157)
T 2obx_A 83 GGIYRHEFVASAVIDGMMNVQLSTGVPVLSAV 114 (157)
T ss_dssp CSSBCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 555333 111111 1234678877653
No 171
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=40.73 E-value=1.6e+02 Score=26.59 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=55.7
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 28 g~iD~~~l~~lv~~li~~G--v~gl-~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~ 104 (301)
T 1xky_A 28 GNIDFAKTTKLVNYLIDNG--TTAI-VVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKAT 104 (301)
T ss_dssp SSBCHHHHHHHHHHHHHTT--CCEE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHH
Confidence 3454445666677776778 5532 222 23553 45677777888877765334445999999988877777665555
Q ss_pred hcCCcEEEeccc
Q 017815 121 LRGVSFIQIPTT 132 (365)
Q Consensus 121 ~~g~p~i~IPTT 132 (365)
..|..-+.+.+-
T Consensus 105 ~~Gadavlv~~P 116 (301)
T 1xky_A 105 EVGVDAVMLVAP 116 (301)
T ss_dssp HTTCSEEEEECC
T ss_pred hcCCCEEEEcCC
Confidence 678776666433
No 172
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=40.71 E-value=1.6e+02 Score=26.49 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=57.0
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++- +++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 23 g~iD~~~l~~lv~~li~~G--v~g-l~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~ 99 (297)
T 3flu_A 23 GSIHYEQLRDLIDWHIENG--TDG-IVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAE 99 (297)
T ss_dssp SCBCHHHHHHHHHHHHHTT--CCE-EEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCE-EEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHH
Confidence 3444445666666676778 543 2222 23553 45677777888887775444555999999999998888776666
Q ss_pred hcCCcEEEecc
Q 017815 121 LRGVSFIQIPT 131 (365)
Q Consensus 121 ~~g~p~i~IPT 131 (365)
..|..-+.+.+
T Consensus 100 ~~Gadavlv~~ 110 (297)
T 3flu_A 100 KAGADYTLSVV 110 (297)
T ss_dssp HTTCSEEEEEC
T ss_pred HcCCCEEEECC
Confidence 67877766543
No 173
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=40.69 E-value=1.8e+02 Score=25.27 Aligned_cols=80 Identities=9% Similarity=0.071 Sum_probs=48.1
Q ss_pred chhhhhcc-CCceEEEEEccCchH--HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 25 NCLYYRHV-QGKKVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 25 ~~~l~~~~-~~~~~livtd~~~~~--~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
-+++.++. +.+|+.+++++.... .-.+.+++.+++.| +++...... +.+...+.++.+.+ ++| .|
T Consensus 123 ~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~g--i~~~~~~~~------~~~~~~~~~~~l~~-~~d---ai 190 (295)
T 3lft_A 123 VELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAG--LTVETFAVP------STNEIASTVTVMTS-KVD---AI 190 (295)
T ss_dssp HHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTT--CEEEEEEES------SGGGHHHHHHHHTT-TCS---EE
T ss_pred HHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcC--CEEEEEecC------CHHHHHHHHHHHHh-cCC---EE
Confidence 35666652 358999999875432 23566777888888 765433332 23345555555542 455 99
Q ss_pred EEecCchHhhHHHHH
Q 017815 102 VALGGGVIGDMCGYA 116 (365)
Q Consensus 102 IaiGGGsv~D~ak~v 116 (365)
++.....++...+.+
T Consensus 191 ~~~~D~~a~g~~~~l 205 (295)
T 3lft_A 191 WVPIDNTIASGFPTV 205 (295)
T ss_dssp EECSCHHHHHTHHHH
T ss_pred EECCchhHHHHHHHH
Confidence 998777666544433
No 174
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=40.52 E-value=1.7e+02 Score=26.39 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=55.7
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++- +++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 32 g~iD~~~l~~lv~~li~~G--v~g-l~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~ 108 (304)
T 3cpr_A 32 GDIDIAAGREVAAYLVDKG--LDS-LVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAA 108 (304)
T ss_dssp SCBCHHHHHHHHHHHHHTT--CCE-EEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCE-EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4454445667777777778 543 2233 23553 45677777888887765334555999999988877777665555
Q ss_pred hcCCcEEEecc
Q 017815 121 LRGVSFIQIPT 131 (365)
Q Consensus 121 ~~g~p~i~IPT 131 (365)
..|..-+.+.+
T Consensus 109 ~~Gadavlv~~ 119 (304)
T 3cpr_A 109 SAGADGLLVVT 119 (304)
T ss_dssp HTTCSEEEEEC
T ss_pred hcCCCEEEECC
Confidence 67877666543
No 175
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=40.12 E-value=1.2e+02 Score=26.38 Aligned_cols=75 Identities=9% Similarity=0.044 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+.+.+.+.+.| +++.+ +.... +.+...++.+.+.+.++| .||-.+....-+..+. ....++
T Consensus 24 ~~~~~~~gi~~~a~~~g--~~~~~--~~~~~---~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~~~~~---l~~~~i 90 (288)
T 3gv0_A 24 FTSQMVFGITEVLSTTQ--YHLVV--TPHIH---AKDSMVPIRYILETGSAD---GVIISKIEPNDPRVRF---MTERNM 90 (288)
T ss_dssp HHHHHHHHHHHHHTTSS--CEEEE--CCBSS---GGGTTHHHHHHHHHTCCS---EEEEESCCTTCHHHHH---HHHTTC
T ss_pred HHHHHHHHHHHHHHHcC--CEEEE--ecCCc---chhHHHHHHHHHHcCCcc---EEEEecCCCCcHHHHH---HhhCCC
Confidence 34457777888888888 66533 32211 122234455556778888 8887765433333332 335799
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-..
T Consensus 91 PvV~i~~~ 98 (288)
T 3gv0_A 91 PFVTHGRS 98 (288)
T ss_dssp CEEEESCC
T ss_pred CEEEECCc
Confidence 99998665
No 176
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=40.07 E-value=1.8e+02 Score=27.00 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 82 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 82 ~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
.+.++.+.+++.++| +|+.+|+-... ++...+ +...++|++.+
T Consensus 99 ~~~~l~~~l~~~kPD---vVi~~g~~~~~-~~~~~a-a~~~~IPv~h~ 141 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPD---VVLVHGDTATT-FAASLA-AYYQQIPVGHV 141 (396)
T ss_dssp HHHHHHHHHHHHCCS---EEEEETTSHHH-HHHHHH-HHTTTCCEEEE
T ss_pred HHHHHHHHHHhcCCC---EEEEECCchhH-HHHHHH-HHHhCCCEEEE
Confidence 345556666667777 77777754331 222222 34567777655
No 177
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=39.51 E-value=1.6e+02 Score=24.27 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=52.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-----------CCCHHHHHHHHHHHHHcCCCCcceEE
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-----------YKNMDTLMKVFDKAIESRLDRRCTFV 102 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-----------~~~~~~v~~~~~~~~~~~~dr~~~II 102 (365)
.+|+.|+.-++....-.-...+.|..+| +++.+....++++ ..+++++. ....+| .||
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~------~~~~~D---~li 71 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAG--IKVTVAGLAGKDPVQCSRDVVICPDASLEDAK------KEGPYD---VVV 71 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTT--CEEEEEETTCSSCEECTTSCEECCSEEHHHHH------TTCCCS---EEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCC--CEEEEEEcCCCCccccCCCCEEeCCcCHHHcC------CccCCC---EEE
Confidence 3677777766666553344556777888 7776544333321 12222220 112344 888
Q ss_pred EecCc-hHhh------HHHHHHHHhhcCCcEEEecccc
Q 017815 103 ALGGG-VIGD------MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 103 aiGGG-sv~D------~ak~vA~~~~~g~p~i~IPTTl 133 (365)
-.||- ..-+ +.+++...+..+.++.+|+|..
T Consensus 72 vpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~ 109 (197)
T 2rk3_A 72 LPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP 109 (197)
T ss_dssp ECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH
T ss_pred ECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 88884 3332 3445555567899999999985
No 178
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=39.34 E-value=38 Score=28.08 Aligned_cols=88 Identities=9% Similarity=0.018 Sum_probs=50.7
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN-MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 114 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~-~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak 114 (365)
|+.|-+|..-++ +.+.|.+.|++.| ++|.-+--...++.-+ .+...++.+.+.+..+||. |+-=|-|.=+-+
T Consensus 5 kIaigsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~G--IliCGTGiG~si-- 77 (162)
T 2vvp_A 5 RVYLGADHAGYE-LKQRIIEHLKQTG--HEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLG--IVLGGSGNGEQI-- 77 (162)
T ss_dssp EEEEEECHHHHH-HHHHHHHHHHHTT--CEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEE--EEEESSSHHHHH--
T ss_pred EEEEEeCchhHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceE--EEEeCCcHHHHH--
Confidence 677778876554 6888999999999 7764432122221222 3445667777777777753 333333332222
Q ss_pred HHHHHhhcCCcEEEeccc
Q 017815 115 YAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 115 ~vA~~~~~g~p~i~IPTT 132 (365)
|+--..|++...+-.+
T Consensus 78 --aANKv~GIRAAl~~d~ 93 (162)
T 2vvp_A 78 --AANKVPGARCALAWSV 93 (162)
T ss_dssp --HHHTSTTCCEEECCSH
T ss_pred --HHhcCCCeEEEEeCCH
Confidence 2223468877776554
No 179
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=39.21 E-value=1e+02 Score=25.38 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=50.0
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec----C
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG----G 106 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG----G 106 (365)
+.|+.||..+.-.. .+.+--.+.|.+.|.. ++.++.+|+.-. +--.++.+.+ ++| .||++| |
T Consensus 17 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~-~i~v~~VPGafE------iP~aak~la~-~yD---avIaLG~VIrG 85 (160)
T 2c92_A 17 GVRLAIVASSWHGKICDALLDGARKVAAGCGLD-DPTVVRVLGAIE------IPVVAQELAR-NHD---AVVALGVVIRG 85 (160)
T ss_dssp TCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCS-CCEEEEESSGGG------HHHHHHHHHT-SCS---EEEEEEEEECC
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCC-ceEEEECCcHHH------HHHHHHHHHh-cCC---EEEEEeeeecC
Confidence 45788887765433 4566667778888831 455666776322 2223333333 466 999999 5
Q ss_pred chHhhHHHHHHH---------HhhcCCcEEEeccc
Q 017815 107 GVIGDMCGYAAA---------SYLRGVSFIQIPTT 132 (365)
Q Consensus 107 Gsv~D~ak~vA~---------~~~~g~p~i~IPTT 132 (365)
++..+ .|++. ....++|++.-=.|
T Consensus 86 ~T~Hf--d~Va~~vs~Gl~~v~L~~~vPV~~GVLT 118 (160)
T 2c92_A 86 QTPHF--DYVCDAVTQGLTRVSLDSSTPIANGVLT 118 (160)
T ss_dssp SSTHH--HHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CchHH--HHHHHHHHHHHHHHHhhcCCCEEEEEcC
Confidence 65443 22332 23468888875333
No 180
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=39.03 E-value=1.4e+02 Score=27.17 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=58.0
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++- +++. ..|| +.=|.++-.++++.+.+.- .|--+|+++|+.++-|+...+..+..
T Consensus 25 ~iD~~~l~~lv~~li~~G--v~G-l~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~ 100 (313)
T 3dz1_A 25 KIDDVSIDRLTDFYAEVG--CEG-VTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMD 100 (313)
T ss_dssp CBCHHHHHHHHHHHHHTT--CSE-EEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC--CCE-EEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHH
Confidence 344345666666776778 543 2222 2355 3567788888888888876 66679999999999888887766666
Q ss_pred cCCcEEEec
Q 017815 122 RGVSFIQIP 130 (365)
Q Consensus 122 ~g~p~i~IP 130 (365)
.|..-+.+.
T Consensus 101 ~Gadavlv~ 109 (313)
T 3dz1_A 101 AGAAGVMIA 109 (313)
T ss_dssp HTCSEEEEC
T ss_pred cCCCEEEEC
Confidence 788877773
No 181
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=38.92 E-value=27 Score=30.61 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=24.6
Q ss_pred CcceEEEecCchHhhHH-HHHHHHh-hcCCcEEEecccc
Q 017815 97 RRCTFVALGGGVIGDMC-GYAAASY-LRGVSFIQIPTTV 133 (365)
Q Consensus 97 r~~~IIaiGGGsv~D~a-k~vA~~~-~~g~p~i~IPTTl 133 (365)
++..+||+|.||+.... +.++... ..++.+..+||+.
T Consensus 19 ~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS~ 57 (226)
T 3ixq_A 19 KDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSF 57 (226)
T ss_dssp CTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSH
T ss_pred CCCCEEEeCcHHHHHHHHHHHHHhhhhcCCeeEeecccH
Confidence 35699999999976633 2222222 2367889999984
No 182
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=38.72 E-value=2.2e+02 Score=25.87 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=64.0
Q ss_pred cchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
..+.+..+...+++.+++-.+....-.+.+.+.|++..+ ++ ...+.-++.|-+.=+++.+.+. .+| ++|-
T Consensus 146 ~~ed~~~l~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p--~~---~~~~tIC~AT~~RQ~av~~la~--~~D---~miV 215 (297)
T 3dnf_A 146 TLEDIGEALKHERVGIVAQTTQNEEFFKEVVGEIALWVK--EV---KVINTICNATSLRQESVKKLAP--EVD---VMII 215 (297)
T ss_dssp SGGGGGGGGGCSEEEEEECTTCCHHHHHHHHHHHHHHSS--EE---EEECCCCSHHHHHHHHHHHHGG--GSS---EEEE
T ss_pred CHHHHHhcCCCCcEEEEEecCCcHHHHHHHHHHHHHhCC--CC---CCCCCccHHHHHHHHHHHHHHh--hCC---EEEE
Confidence 344455544356777777666555556667777766542 22 2345556666555555554433 356 9999
Q ss_pred ecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 104 LGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
|||-..-..-+..-.+-..|.|-..|-|.
T Consensus 216 VGg~nSSNT~rL~eia~~~~~~ty~Ie~~ 244 (297)
T 3dnf_A 216 IGGKNSGNTRRLYYISKELNPNTYHIETA 244 (297)
T ss_dssp ESCTTCHHHHHHHHHHHHHCSSEEEESSG
T ss_pred ECCCCCchhHHHHHHHHhcCCCEEEeCCh
Confidence 99988888888776665678888888776
No 183
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=38.70 E-value=89 Score=23.29 Aligned_cols=77 Identities=16% Similarity=0.035 Sum_probs=43.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcC-CCCcceEEE---ecCchH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR-LDRRCTFVA---LGGGVI 109 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~-~dr~~~IIa---iGGGsv 109 (365)
..+++||.|... ..+.+.+.|.+.| +++. .+. + ..+....+.+.. +| +||. +.+..-
T Consensus 7 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~~~~~~~~d---lvi~D~~l~~~~g 67 (136)
T 3hdv_A 7 RPLVLVVDDNAV---NREALILYLKSRG--IDAV--GAD------G---AEEARLYLHYQKRIG---LMITDLRMQPESG 67 (136)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CCEE--EES------S---HHHHHHHHHHCTTEE---EEEECSCCSSSCH
T ss_pred CCeEEEECCCHH---HHHHHHHHHHHcC--ceEE--EeC------C---HHHHHHHHHhCCCCc---EEEEeccCCCCCH
Confidence 357777777654 3455566677777 6653 222 2 233344445444 55 6653 467777
Q ss_pred hhHHHHHHHHhhcCCcEEEe
Q 017815 110 GDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~I 129 (365)
+++.+.+.......+|++.+
T Consensus 68 ~~~~~~l~~~~~~~~~ii~~ 87 (136)
T 3hdv_A 68 LDLIRTIRASERAALSIIVV 87 (136)
T ss_dssp HHHHHHHHTSTTTTCEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEE
Confidence 88887663221245676665
No 184
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=38.70 E-value=1.1e+02 Score=22.77 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=43.8
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE-e--c-----C
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA-L--G-----G 106 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa-i--G-----G 106 (365)
.+++||.|... ..+.+.+.|...| +++. .+. + ..++.+.+.+..+| +||- + . +
T Consensus 4 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---lvi~d~~~~~~~~~~ 64 (140)
T 2qr3_A 4 GTIIIVDDNKG---VLTAVQLLLKNHF--SKVI--TLS------S---PVSLSTVLREENPE---VVLLDMNFTSGINNG 64 (140)
T ss_dssp CEEEEECSCHH---HHHHHHHHHTTTS--SEEE--EEC------C---HHHHHHHHHHSCEE---EEEEETTTTC-----
T ss_pred ceEEEEeCCHH---HHHHHHHHHHhCC--cEEE--EeC------C---HHHHHHHHHcCCCC---EEEEeCCcCCCCCCC
Confidence 57777777654 4556667777777 6543 222 3 34444555666665 5553 2 2 5
Q ss_pred chHhhHHHHHHHHhhcCCcEEEe
Q 017815 107 GVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 107 Gsv~D~ak~vA~~~~~g~p~i~I 129 (365)
....++.+.+... ...+|++.+
T Consensus 65 ~~g~~~~~~l~~~-~~~~~ii~l 86 (140)
T 2qr3_A 65 NEGLFWLHEIKRQ-YRDLPVVLF 86 (140)
T ss_dssp CCHHHHHHHHHHH-CTTCCEEEE
T ss_pred ccHHHHHHHHHhh-CcCCCEEEE
Confidence 5667777766432 356787776
No 185
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=38.59 E-value=86 Score=27.82 Aligned_cols=74 Identities=7% Similarity=0.108 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+-+.+.+++.| +++. .+.. ..+.+...+.++.+.+.++| .||.+|.+. .|....++ .-..++|
T Consensus 22 ~~~~~~gi~~~~~~~g--~~~~--~~~~---~~~~~~~~~~l~~l~~~~vd---gIi~~~~~~-~~~~~~~~-~~~p~~p 89 (296)
T 2hqb_A 22 NRKAYEGLLNIHSNLD--VDVV--LEEG---VNSEQKAHRRIKELVDGGVN---LIFGHGHAF-AEYFSTIH-NQYPDVH 89 (296)
T ss_dssp THHHHHHHHHHHHHSC--CEEE--EECC---CCSHHHHHHHHHHHHHTTCC---EEEECSTHH-HHHHHTTT-TSCTTSE
T ss_pred HHHHHHHHHHHHHHhC--CeEE--EEeC---CCCHHHHHHHHHHHHHCCCC---EEEEcCHhH-HHHHHHHH-HHCCCCE
Confidence 3446677777788888 6643 3332 12334556778888888888 999887553 33322121 1123788
Q ss_pred EEEecc
Q 017815 126 FIQIPT 131 (365)
Q Consensus 126 ~i~IPT 131 (365)
++.+=.
T Consensus 90 ~v~id~ 95 (296)
T 2hqb_A 90 FVSFNG 95 (296)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 998843
No 186
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=38.23 E-value=1.5e+02 Score=26.72 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=55.4
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 27 g~iD~~~l~~lv~~li~~G--v~Gl-~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~ 103 (303)
T 2wkj_A 27 QALDKASLRRLVQFNIQQG--IDGL-YVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAK 103 (303)
T ss_dssp SSBCHHHHHHHHHHHHHTT--CSEE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEE-EECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHH
Confidence 3454445666677776778 5532 233 23553 56777777888887765334555999999988877776665555
Q ss_pred hcCCcEEEeccc
Q 017815 121 LRGVSFIQIPTT 132 (365)
Q Consensus 121 ~~g~p~i~IPTT 132 (365)
..|..-+.+.+-
T Consensus 104 ~~Gadavlv~~P 115 (303)
T 2wkj_A 104 RYGFDAVSAVTP 115 (303)
T ss_dssp HHTCSEEEEECC
T ss_pred hCCCCEEEecCC
Confidence 568776666433
No 187
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=38.23 E-value=1.9e+02 Score=24.79 Aligned_cols=87 Identities=7% Similarity=-0.022 Sum_probs=53.2
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+.+.+.+.+.| +++.++ .. +.+.+.-.+.++.+.+.++| .||-.+.....
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~---~~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~- 77 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANK--YEALVA--TS---QNSRISEREQILEFVHLKVD---AIFITTLDDVY- 77 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTT--CEEEEE--EC---SSCHHHHHHHHHHHHHTTCS---EEEEECSCTTT-
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcC--CEEEEE--CC---CCCHHHHHHHHHHHHHcCCC---EEEEecCChHH-
Confidence 4555555432 23336677778888888 665433 22 12556667778888888888 88877654332
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
....+......++|+|.+-..
T Consensus 78 ~~~~~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 78 IGSAIEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp THHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHcCCCEEEecCC
Confidence 122232233579999999665
No 188
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=38.18 E-value=1e+02 Score=25.13 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=49.5
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCC-ceEEEEEeCCCCCCCCHHHHHHHHHHHH-HcCCCCcceEEEec---
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAI-ESRLDRRCTFVALG--- 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~-i~v~~~~~~~~e~~~~~~~v~~~~~~~~-~~~~dr~~~IIaiG--- 105 (365)
+.|+.||..+.-.. ...+--.+.|.+.|.. -++..+.+|+. +| +--.++.+. ..++| .||++|
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa-----fE-iP~aa~~la~~~~yD---avIalG~VI 82 (154)
T 1hqk_A 12 GLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGS-----WE-IPVAAGELARKEDID---AVIAIGVLI 82 (154)
T ss_dssp TCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSG-----GG-HHHHHHHHHTCTTCC---EEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH-----HH-HHHHHHHHHhcCCCC---EEEEeeeee
Confidence 45788887765333 3566666778887731 13456667763 33 223333333 34566 999999
Q ss_pred -CchHhhHHHHHHH---------HhhcCCcEEEeccc
Q 017815 106 -GGVIGDMCGYAAA---------SYLRGVSFIQIPTT 132 (365)
Q Consensus 106 -GGsv~D~ak~vA~---------~~~~g~p~i~IPTT 132 (365)
|++..+ .|++. ....++|++.-=.|
T Consensus 83 rG~T~Hf--d~Va~~vs~gl~~v~l~~~vPV~~GVLT 117 (154)
T 1hqk_A 83 RGATPHF--DYIASEVSKGLANLSLELRKPITFGVIT 117 (154)
T ss_dssp CCSSTHH--HHHHHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred cCCchHH--HHHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 555443 22332 23467888775333
No 189
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=38.10 E-value=75 Score=24.50 Aligned_cols=76 Identities=8% Similarity=0.058 Sum_probs=44.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|... ..+.+.+.|...| +++. .+. + ..++.+.+.+..+| +||. +++....
T Consensus 3 ~~~ILivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---liild~~l~~~~g~ 63 (155)
T 1qkk_A 3 APSVFLIDDDRD---LRKAMQQTLELAG--FTVS--SFA------S---ATEALAGLSADFAG---IVISDIRMPGMDGL 63 (155)
T ss_dssp -CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------C---HHHHHHTCCTTCCS---EEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHH---HHHHHHHHHHHcC--cEEE--EEC------C---HHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 357787777654 3455666677777 6543 222 2 33444444555555 6553 4566777
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++.+.+... ...+|++.+
T Consensus 64 ~~~~~l~~~-~~~~pii~l 81 (155)
T 1qkk_A 64 ALFRKILAL-DPDLPMILV 81 (155)
T ss_dssp HHHHHHHHH-CTTSCEEEE
T ss_pred HHHHHHHhh-CCCCCEEEE
Confidence 888777533 357888877
No 190
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=38.09 E-value=1.1e+02 Score=27.67 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=21.0
Q ss_pred CcceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 97 RRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 97 r~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
-+.+|+++|||..+= +++++. .....++++.|...
T Consensus 182 ~d~vv~~vGtGGt~~Gi~~~lk-~~~~~~~vigVe~~ 217 (325)
T 1j0a_A 182 FDSIVVAAGSGGTLAGLSLGLS-ILNEDIRPVGIAVG 217 (325)
T ss_dssp CSEEEEEESSSHHHHHHHHHHH-HTTCCCEEEEEECS
T ss_pred CCEEEEeCCchHhHHHHHHHHH-hcCCCceEEEEEec
Confidence 356899999887643 333332 12345677777665
No 191
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=37.50 E-value=1.6e+02 Score=26.36 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=56.6
Q ss_pred ccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 42 NNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 42 d~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
|..+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+
T Consensus 15 dg~iD~~~l~~lv~~li~~G--v~gl-~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A 91 (294)
T 2ehh_A 15 EGEVDYEALGNLIEFHVDNG--TDAI-LVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHA 91 (294)
T ss_dssp TTEECHHHHHHHHHHHHTTT--CCEE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHH
Confidence 44454445666667777778 5532 222 23553 4567777788888776533455599999998888777766555
Q ss_pred hhcCCcEEEeccc
Q 017815 120 YLRGVSFIQIPTT 132 (365)
Q Consensus 120 ~~~g~p~i~IPTT 132 (365)
...|..-+.+.+-
T Consensus 92 ~~~Gadavlv~~P 104 (294)
T 2ehh_A 92 KEVGADGALVVVP 104 (294)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhcCCCEEEECCC
Confidence 5678777666433
No 192
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=37.29 E-value=1e+02 Score=27.37 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=27.2
Q ss_pred CcceEEEecCchHhh-HHHHHHHHhhcCCcEEEecccc
Q 017815 97 RRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 97 r~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTTl 133 (365)
++..+|++|+||+.- ++++++.....|+.+..|||+.
T Consensus 40 ~dg~vIgLGsGST~~~~i~~L~~~~~~gl~ItvVttS~ 77 (255)
T 3hhe_A 40 EDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQ 77 (255)
T ss_dssp CTTEEEEECCSHHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhhccCCcEEEEcCCH
Confidence 355899999998665 5566654434567899999996
No 193
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=37.21 E-value=1.5e+02 Score=27.69 Aligned_cols=47 Identities=6% Similarity=0.080 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
..+.++.+.+++.++| +|+.+|+-... .+...+ +...++|++.+-..
T Consensus 101 ~~~~~l~~~l~~~kPD---~Vi~~gd~~~~-l~~~la-A~~~~IPv~h~~ag 147 (403)
T 3ot5_A 101 RVMNGINEVIAAENPD---IVLVHGDTTTS-FAAGLA-TFYQQKMLGHVEAG 147 (403)
T ss_dssp HHHHHHHHHHHHHCCS---EEEEETTCHHH-HHHHHH-HHHTTCEEEEESCC
T ss_pred HHHHHHHHHHHHcCCC---EEEEECCchhH-HHHHHH-HHHhCCCEEEEECC
Confidence 4566777788888888 99999873322 222233 34679998877543
No 194
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=37.11 E-value=1.3e+02 Score=27.52 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=58.0
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.+.+.-..|--+|+++|+.++-|+...+..+.
T Consensus 40 g~iD~~~l~~lv~~li~~G--v~Gi-~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~ 116 (315)
T 3na8_A 40 GGLDLPALGRSIERLIDGG--VHAI-APLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAE 116 (315)
T ss_dssp SSBCHHHHHHHHHHHHHTT--CSEE-ECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHH
Confidence 3444445667777777788 5532 222 2255 345677888888888775444555999999999988888776666
Q ss_pred hcCCcEEEeccc
Q 017815 121 LRGVSFIQIPTT 132 (365)
Q Consensus 121 ~~g~p~i~IPTT 132 (365)
..|..-+.+-+-
T Consensus 117 ~~Gadavlv~~P 128 (315)
T 3na8_A 117 SLGAEAVMVLPI 128 (315)
T ss_dssp HTTCSEEEECCC
T ss_pred hcCCCEEEECCC
Confidence 678877776443
No 195
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=36.24 E-value=1.4e+02 Score=24.45 Aligned_cols=86 Identities=12% Similarity=0.199 Sum_probs=47.7
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhh-CCCC-ceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec---
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTR-GNPN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--- 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~-~g~~-i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG--- 105 (365)
+.|+.||..+.-.. .+.+-..+.|++ .|.. -++.++.+|+ .+|-=..+-..++..++| .||++|
T Consensus 17 ~~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPG-----afEiP~aa~~la~~~~yD---avIaLG~VI 88 (159)
T 1kz1_A 17 ELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPG-----SWELPQGIRASIARNTYD---AVIGIGVLI 88 (159)
T ss_dssp TCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSS-----GGGHHHHHHHHHHHSCCS---EEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEecccc
Confidence 45788888875333 355555666777 6621 1345566775 333222222333455677 999998
Q ss_pred -CchHhhHHHHHHH---------HhhcCCcEEEe
Q 017815 106 -GGVIGDMCGYAAA---------SYLRGVSFIQI 129 (365)
Q Consensus 106 -GGsv~D~ak~vA~---------~~~~g~p~i~I 129 (365)
|++..+ .|++. ....++|++.-
T Consensus 89 rG~T~Hf--d~Va~~v~~Gl~~v~L~~~vPV~~G 120 (159)
T 1kz1_A 89 KGSTMHF--EYISEAVVHGLMRVGLDSGVPVILG 120 (159)
T ss_dssp CCSSSHH--HHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cCCchHH--HHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 555332 22222 23467888764
No 196
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=36.18 E-value=1.2e+02 Score=21.98 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=44.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+...|...| +++. ... + ..++.+.+.+..+| +|+- +.|..-.+
T Consensus 4 ~~ilivdd~~~---~~~~l~~~l~~~~--~~v~--~~~------~---~~~a~~~~~~~~~d---lvl~D~~l~~~~g~~ 64 (124)
T 1srr_A 4 EKILIVDDQSG---IRILLNEVFNKEG--YQTF--QAA------N---GLQALDIVTKERPD---LVLLDMKIPGMDGIE 64 (124)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHTTT--CEEE--EES------S---HHHHHHHHHHHCCS---EEEEESCCTTCCHHH
T ss_pred ceEEEEeCCHH---HHHHHHHHHHHCC--cEEE--EeC------C---HHHHHHHHhccCCC---EEEEecCCCCCCHHH
Confidence 47787777654 4455666677777 5542 232 2 23344455556666 6653 45667778
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+... ...+|++.+
T Consensus 65 ~~~~l~~~-~~~~~ii~~ 81 (124)
T 1srr_A 65 ILKRMKVI-DENIRVIIM 81 (124)
T ss_dssp HHHHHHHH-CTTCEEEEE
T ss_pred HHHHHHHh-CCCCCEEEE
Confidence 88876432 356777776
No 197
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=36.06 E-value=1.5e+02 Score=27.46 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=57.0
Q ss_pred ccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 42 NNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 42 d~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
|..+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+
T Consensus 46 dg~ID~~~l~~lv~~li~~G--v~Gl-~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A 122 (343)
T 2v9d_A 46 DGQLDKPGTAALIDDLIKAG--VDGL-FFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHA 122 (343)
T ss_dssp TSSBCHHHHHHHHHHHHHTT--CSCE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcC--CCEE-EeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHH
Confidence 34454446667777777777 5432 222 3356 35677777888888776533445599999998888877766555
Q ss_pred hhcCCcEEEeccc
Q 017815 120 YLRGVSFIQIPTT 132 (365)
Q Consensus 120 ~~~g~p~i~IPTT 132 (365)
...|..-+.+.+-
T Consensus 123 ~~~Gadavlv~~P 135 (343)
T 2v9d_A 123 QQAGADGIVVINP 135 (343)
T ss_dssp HHHTCSEEEEECC
T ss_pred HhcCCCEEEECCC
Confidence 5668777766443
No 198
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=36.05 E-value=55 Score=26.88 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 48 LYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 48 ~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.-...+.+.|++.| +++..+ ++++ + +.+.+.++.+.+.++| +||--||=++.+
T Consensus 27 sn~~~l~~~l~~~G--~~v~~~~iv~D-----d-~~i~~al~~a~~~~~D---lVittGG~s~g~ 80 (164)
T 3pzy_A 27 RCGPIITEWLAQQG--FSSAQPEVVAD-----G-SPVGEALRKAIDDDVD---VILTSGGTGIAP 80 (164)
T ss_dssp CHHHHHHHHHHHTT--CEECCCEEECS-----S-HHHHHHHHHHHHTTCS---EEEEESCCSSST
T ss_pred HHHHHHHHHHHHCC--CEEEEEEEeCC-----H-HHHHHHHHHHHhCCCC---EEEECCCCCCCC
Confidence 35677788888888 665322 3333 4 6677666666554667 999999987754
No 199
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=36.02 E-value=1.5e+02 Score=27.17 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=55.4
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 50 g~iD~~~l~~lv~~li~~G--v~Gl-~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~ 126 (332)
T 2r8w_A 50 GRVDIEAFSALIARLDAAE--VDSV-GILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAE 126 (332)
T ss_dssp CCBCHHHHHHHHHHHHHHT--CSEE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHH
Confidence 4454445666666666667 5432 232 23553 46777778888887765434555999999988877776665555
Q ss_pred hcCCcEEEeccc
Q 017815 121 LRGVSFIQIPTT 132 (365)
Q Consensus 121 ~~g~p~i~IPTT 132 (365)
..|..-+.+.+-
T Consensus 127 ~~Gadavlv~~P 138 (332)
T 2r8w_A 127 AAGADALLLAPV 138 (332)
T ss_dssp HHTCSEEEECCC
T ss_pred hcCCCEEEECCC
Confidence 568777766443
No 200
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=35.99 E-value=87 Score=25.72 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=48.1
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCCc-eEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec----
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG---- 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~i-~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG---- 105 (365)
+.|+.||..+.-.. .+.+--.+.|++.|... ++..+.+|+ .+|-=..+...++..++| .||++|
T Consensus 10 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPG-----afEiP~aa~~la~~~~yD---avIaLG~VIr 81 (158)
T 1di0_A 10 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPG-----AYEIPLHAKTLARTGRYA---AIVGAAFVID 81 (158)
T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESS-----GGGHHHHHHHHHHTSCCS---EEEEEEECCC
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEeecccc
Confidence 45788887765333 35555566677666211 355666776 333222222223445667 999999
Q ss_pred CchHhhHHHHHHH---------HhhcCCcEEEeccc
Q 017815 106 GGVIGDMCGYAAA---------SYLRGVSFIQIPTT 132 (365)
Q Consensus 106 GGsv~D~ak~vA~---------~~~~g~p~i~IPTT 132 (365)
|++..+ .|++. ....++|++.-=.|
T Consensus 82 G~T~Hf--d~Va~~vs~Gl~~v~L~~~vPV~~GVLT 115 (158)
T 1di0_A 82 GGIYDH--DFVATAVINGMMQVQLETEVPVLSVVLT 115 (158)
T ss_dssp CSSBCC--HHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred CCCcHH--HHHHHHHHHHHHHHHhhcCCCEEEEecC
Confidence 555433 22222 23467887764333
No 201
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=35.92 E-value=1.4e+02 Score=22.44 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=46.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEE---e-cCch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVA---L-GGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIa---i-GGGs 108 (365)
..+++||.|... ..+.+.+.|.+.| +++. .+. + ..+..+.+.+ ..+| +||. + +|..
T Consensus 5 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~~d---lvi~D~~l~~~~~ 65 (140)
T 3h5i_A 5 DKKILIVEDSKF---QAKTIANILNKYG--YTVE--IAL------T---GEAAVEKVSGGWYPD---LILMDIELGEGMD 65 (140)
T ss_dssp -CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHTTCCCS---EEEEESSCSSSCC
T ss_pred CcEEEEEeCCHH---HHHHHHHHHHHcC--CEEE--Eec------C---hHHHHHHHhcCCCCC---EEEEeccCCCCCC
Confidence 457888887764 3455666677777 6543 232 2 3344445554 4566 6553 2 3577
Q ss_pred HhhHHHHHHHHhhcCCcEEEecc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPT 131 (365)
-.++++.+.. ...+|+|.+-.
T Consensus 66 g~~~~~~l~~--~~~~~ii~ls~ 86 (140)
T 3h5i_A 66 GVQTALAIQQ--ISELPVVFLTA 86 (140)
T ss_dssp HHHHHHHHHH--HCCCCEEEEES
T ss_pred HHHHHHHHHh--CCCCCEEEEEC
Confidence 8888887743 36788777633
No 202
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=35.58 E-value=2e+02 Score=24.27 Aligned_cols=76 Identities=5% Similarity=0.059 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcC-CCCcceEEEecCc--hHhhHHHHHHHHhhc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR-LDRRCTFVALGGG--VIGDMCGYAAASYLR 122 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~-~dr~~~IIaiGGG--sv~D~ak~vA~~~~~ 122 (365)
+..+.+.+.+.+.+.| +++.+ +. ...+.+.+.-.+.++.+.+.+ +| .||..+.. ..-+..+. ....
T Consensus 15 ~~~~~~gi~~~~~~~g--~~~~~--~~-~~~~~~~~~~~~~i~~l~~~~~vd---gii~~~~~~~~~~~~~~~---~~~~ 83 (276)
T 3ksm_A 15 WRQVYLGAQKAADEAG--VTLLH--RS-TKDDGDIAGQIQILSYHLSQAPPD---ALILAPNSAEDLTPSVAQ---YRAR 83 (276)
T ss_dssp HHHHHHHHHHHHHHHT--CEEEE--CC-CSSTTCHHHHHHHHHHHHHHSCCS---EEEECCSSTTTTHHHHHH---HHHT
T ss_pred HHHHHHHHHHHHHHcC--CEEEE--EC-CCCCCCHHHHHHHHHHHHHhCCCC---EEEEeCCCHHHHHHHHHH---HHHC
Confidence 3446777778888888 66532 22 112335666677788888888 99 88888743 22333332 3456
Q ss_pred CCcEEEeccc
Q 017815 123 GVSFIQIPTT 132 (365)
Q Consensus 123 g~p~i~IPTT 132 (365)
++|++.+-+.
T Consensus 84 ~ipvV~~~~~ 93 (276)
T 3ksm_A 84 NIPVLVVDSD 93 (276)
T ss_dssp TCCEEEESSC
T ss_pred CCcEEEEecC
Confidence 9999999665
No 203
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=35.51 E-value=2.2e+02 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.020 Sum_probs=28.4
Q ss_pred CCCCcceEEEecCchHh-------hHHHHHHHHhhcCCcEEEecccc
Q 017815 94 RLDRRCTFVALGGGVIG-------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 94 ~~dr~~~IIaiGGGsv~-------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+.+.-|.|+--||-..+ ++.+++...+..+.++.+|++..
T Consensus 102 ~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp 148 (247)
T 3n7t_A 102 APHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGP 148 (247)
T ss_dssp CGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG
T ss_pred ChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 33334688888886553 34566666678899999999885
No 204
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=35.50 E-value=1.5e+02 Score=22.60 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=47.7
Q ss_pred eEEEEEc--cCchHH--HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 36 KVLVVTN--NTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 36 ~~livtd--~~~~~~--~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++.||. .++.-. ..+.+++.-++.|++++|+..--.+.+..-+.+.+. .+| +||-.+...+-|
T Consensus 4 kivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~---------~AD---~VIia~d~~v~~ 71 (106)
T 2m1z_A 4 KIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVN---------IGE---VVIFAVDTKVRN 71 (106)
T ss_dssp EEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH---------HCS---EEEEEESSCCST
T ss_pred cEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHh---------hCC---EEEEeccccccc
Confidence 5666644 444443 478888888888843444332212222222334443 235 777777766667
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
...|. |.|++.+|+.
T Consensus 72 ~~RF~------gk~v~~~~v~ 86 (106)
T 2m1z_A 72 KERFD------GKVVLEVPVS 86 (106)
T ss_dssp HHHHT------TSEEEEECTT
T ss_pred hhccC------CCcEEEEcHH
Confidence 88875 8999999987
No 205
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=35.39 E-value=2.1e+02 Score=24.45 Aligned_cols=85 Identities=8% Similarity=0.017 Sum_probs=51.3
Q ss_pred ceEEEEEcc-----CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH
Q 017815 35 KKVLVVTNN-----TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI 109 (365)
Q Consensus 35 ~~~livtd~-----~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv 109 (365)
+++-++... ..+..+.+-+.+.+++.| +++. ++. .. .+.+.-.+.++.+...++| .||..+....
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g--~~~~--~~~-~~--~~~~~~~~~~~~l~~~~vd---gii~~~~~~~ 89 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKG--RQLL--LAD-GK--HSAEEERQAIQYLLDLRCD---AIMIYPRFLS 89 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTT--CEEE--EEC-CT--TSHHHHHHHHHHHHHTTCS---EEEEECSSSC
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHCC--CEEE--EEe-CC--CCHHHHHHHHHHHHhcCCC---EEEEecCCCC
Confidence 455555543 123446677777788888 6643 333 22 2445566677777788888 8888876432
Q ss_pred hhHHHHHHHHhh-cCCcEEEeccc
Q 017815 110 GDMCGYAAASYL-RGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~-~g~p~i~IPTT 132 (365)
-+..+. ... .++|+|.+-+.
T Consensus 90 ~~~~~~---l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 90 VDEIDD---IIDAHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHH---HHHTCSSCEEEESCC
T ss_pred hHHHHH---HHhcCCCCEEEEccc
Confidence 222222 234 69999998655
No 206
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=35.35 E-value=1.3e+02 Score=23.02 Aligned_cols=80 Identities=10% Similarity=0.109 Sum_probs=45.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHH---------HcCCCCcceEEE--
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI---------ESRLDRRCTFVA-- 103 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~---------~~~~dr~~~IIa-- 103 (365)
.+++||.|... ..+.+.+.|.+.| +.+.+..+. + ..++.+.++ +..+| +||.
T Consensus 5 ~~ILivddd~~---~~~~l~~~L~~~g--~~~~v~~~~------~---~~~al~~l~~~~~~~~~~~~~~d---liilD~ 67 (152)
T 3heb_A 5 VTIVMIEDDLG---HARLIEKNIRRAG--VNNEIIAFT------D---GTSALNYLFGDDKSGRVSAGRAQ---LVLLDL 67 (152)
T ss_dssp CEEEEECCCHH---HHHHHHHHHHHTT--CCCCEEEES------S---HHHHHHHHHCTTSSSGGGTTCBE---EEEECS
T ss_pred ceEEEEeCCHH---HHHHHHHHHHhCC--CcceEEEeC------C---HHHHHHHHhccccccccccCCCC---EEEEeC
Confidence 47888877654 3455666677777 422223333 2 334444443 23344 6654
Q ss_pred -ecCchHhhHHHHHHHH-hhcCCcEEEecc
Q 017815 104 -LGGGVIGDMCGYAAAS-YLRGVSFIQIPT 131 (365)
Q Consensus 104 -iGGGsv~D~ak~vA~~-~~~g~p~i~IPT 131 (365)
+.+..-+++.+.+... ....+|+|.+-.
T Consensus 68 ~l~~~~g~~~~~~lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 68 NLPDMTGIDILKLVKENPHTRRSPVVILTT 97 (152)
T ss_dssp BCSSSBHHHHHHHHHHSTTTTTSCEEEEES
T ss_pred CCCCCcHHHHHHHHHhcccccCCCEEEEec
Confidence 5788888998877432 235678777633
No 207
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.96 E-value=2.3e+02 Score=25.28 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=51.2
Q ss_pred ceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+.+-++... ..+..+.+.+.+.+.+.| +.+.+. .. +.+.+.-.+.++.+.+.++| .||-.+....-+
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~---~~~~~~~~~~i~~l~~~~vd---GiIi~~~~~~~~ 138 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTE--LQPVVG--VT---DYLPEKEEKVLYEMLSWRPS---GVIIAGLEHSEA 138 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSS--SEEEEE--EC---TTCHHHHHHHHHHHHTTCCS---EEEEECSCCCHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCC--CEEEEE--eC---CCCHHHHHHHHHHHHhCCCC---EEEEECCCCCHH
Confidence 345555432 234457777888888888 665432 21 12456667777888888888 888877543323
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
..+. ....++|+|.+
T Consensus 139 ~~~~---l~~~~iPvV~i 153 (344)
T 3kjx_A 139 ARAM---LDAAGIPVVEI 153 (344)
T ss_dssp HHHH---HHHCSSCEEEE
T ss_pred HHHH---HHhCCCCEEEE
Confidence 3322 33579999998
No 208
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=34.95 E-value=1e+02 Score=28.09 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe--CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL--PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~--~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
.+.....+++.+.+-++| ++- +.+ ..||. .=|.++-.++++.+.+.-..|--+|+++|+ ++-|+...+..+.
T Consensus 29 ~iD~~~l~~lv~~li~~G--v~g--l~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~ 103 (314)
T 3d0c_A 29 EIDWKGLDDNVEFLLQNG--IEV--IVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAI 103 (314)
T ss_dssp CBCHHHHHHHHHHHHHTT--CSE--ECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC--CCE--EEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHH
Confidence 344345666666676777 543 222 22453 467777778888877654345559999999 9888777766556
Q ss_pred hcCCcEEEeccc
Q 017815 121 LRGVSFIQIPTT 132 (365)
Q Consensus 121 ~~g~p~i~IPTT 132 (365)
..|..-+.+.+-
T Consensus 104 ~~Gadavlv~~P 115 (314)
T 3d0c_A 104 DSGADCVMIHQP 115 (314)
T ss_dssp HTTCSEEEECCC
T ss_pred HcCCCEEEECCC
Confidence 678877776443
No 209
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=34.93 E-value=1.7e+02 Score=26.57 Aligned_cols=86 Identities=9% Similarity=0.092 Sum_probs=57.2
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 38 g~iD~~~l~~li~~li~~G--v~Gl-~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~ 114 (315)
T 3si9_A 38 GAIDEKAFCNFVEWQITQG--INGV-SPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAE 114 (315)
T ss_dssp SCBCHHHHHHHHHHHHHTT--CSEE-ECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEE-EeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 3444445666777777778 5532 222 23553 45677777888888775444555999999999998888776666
Q ss_pred hcCCcEEEecc
Q 017815 121 LRGVSFIQIPT 131 (365)
Q Consensus 121 ~~g~p~i~IPT 131 (365)
..|..-+.+.+
T Consensus 115 ~~Gadavlv~~ 125 (315)
T 3si9_A 115 KAGADAVLVVT 125 (315)
T ss_dssp HTTCSEEEEEC
T ss_pred hcCCCEEEECC
Confidence 67877666543
No 210
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=34.89 E-value=1.6e+02 Score=26.25 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=55.0
Q ss_pred ccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 42 NNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 42 d~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
|..+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+
T Consensus 15 dg~iD~~~l~~lv~~li~~G--v~gl-~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a 91 (289)
T 2yxg_A 15 NKEVDFDGLEENINFLIENG--VSGI-VAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFA 91 (289)
T ss_dssp TTEECHHHHHHHHHHHHHTT--CSEE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHH
Confidence 44454445666666676778 5532 222 23553 4567777788887776433455599999998887776666555
Q ss_pred hhcCCcEEEecc
Q 017815 120 YLRGVSFIQIPT 131 (365)
Q Consensus 120 ~~~g~p~i~IPT 131 (365)
...|..-+.+.+
T Consensus 92 ~~~Gadavlv~~ 103 (289)
T 2yxg_A 92 EDVGADAVLSIT 103 (289)
T ss_dssp HHHTCSEEEEEC
T ss_pred HhcCCCEEEECC
Confidence 556877666543
No 211
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=34.63 E-value=1.4e+02 Score=22.17 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=43.8
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhh-CCCCce-EEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTR-GNPNVS-VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~-~g~~i~-v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGs 108 (365)
..+++||.|... ..+.+.+.|.. .| ++ +. .+. + ..++.+.+.+..+| +||- +.+..
T Consensus 8 ~~~iLivdd~~~---~~~~l~~~L~~~~~--~~~v~--~~~------~---~~~a~~~l~~~~~d---lii~d~~l~~~~ 68 (143)
T 3cnb_A 8 DFSILIIEDDKE---FADMLTQFLENLFP--YAKIK--IAY------N---PFDAGDLLHTVKPD---VVMLDLMMVGMD 68 (143)
T ss_dssp -CEEEEECSCHH---HHHHHHHHHHHHCT--TCEEE--EEC------S---HHHHHHHHHHTCCS---EEEEETTCTTSC
T ss_pred CceEEEEECCHH---HHHHHHHHHHhccC--ccEEE--EEC------C---HHHHHHHHHhcCCC---EEEEecccCCCc
Confidence 457888777654 34555666666 67 65 32 222 2 34445555666666 6553 35666
Q ss_pred HhhHHHHHHHH-hhcCCcEEEe
Q 017815 109 IGDMCGYAAAS-YLRGVSFIQI 129 (365)
Q Consensus 109 v~D~ak~vA~~-~~~g~p~i~I 129 (365)
..++.+.+... ....+|++.+
T Consensus 69 g~~~~~~l~~~~~~~~~~ii~~ 90 (143)
T 3cnb_A 69 GFSICHRIKSTPATANIIVIAM 90 (143)
T ss_dssp HHHHHHHHHTSTTTTTSEEEEE
T ss_pred HHHHHHHHHhCccccCCcEEEE
Confidence 67777766321 1345777766
No 212
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=34.52 E-value=2.2e+02 Score=25.85 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
....++++++.+.+.+-+.+|+++|+|..+= ++++.. .....++++.|...
T Consensus 177 t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k-~~~~~~~vigVe~~ 228 (341)
T 1f2d_A 177 GFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMA-QYGRQDDVIAIDAS 228 (341)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHG-GGTCGGGEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHH-hcCCCceEEEEEec
Confidence 4567777777643333356899999887643 232221 11234667777655
No 213
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=34.49 E-value=1.6e+02 Score=26.35 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=55.3
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.--.|--+|+++|+-++-|+...+..+..
T Consensus 18 ~iD~~~l~~lv~~li~~G--v~gl-~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~ 94 (291)
T 3tak_A 18 GVDWKSLEKLVEWHIEQG--TNSI-VAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKD 94 (291)
T ss_dssp CBCHHHHHHHHHHHHHHT--CCEE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC--CCEE-EECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHh
Confidence 343345556666666677 5432 222 23552 456777788888887754445559999999999888887766666
Q ss_pred cCCcEEEecc
Q 017815 122 RGVSFIQIPT 131 (365)
Q Consensus 122 ~g~p~i~IPT 131 (365)
.|..-+.+.+
T Consensus 95 ~Gadavlv~~ 104 (291)
T 3tak_A 95 LGADAALLVT 104 (291)
T ss_dssp HTCSEEEEEC
T ss_pred cCCCEEEEcC
Confidence 7877666543
No 214
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=34.46 E-value=1.6e+02 Score=26.72 Aligned_cols=85 Identities=11% Similarity=-0.050 Sum_probs=56.3
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++- +++. ..|| +.=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+..
T Consensus 25 ~iD~~~l~~lv~~li~~G--v~g-l~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~ 101 (309)
T 3fkr_A 25 DLDLASQKRAVDFMIDAG--SDG-LCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQ 101 (309)
T ss_dssp SBCHHHHHHHHHHHHHTT--CSC-EEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcC--CCE-EEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHH
Confidence 344445566666666777 542 2222 2355 3457777778888877754445559999999999888887766667
Q ss_pred cCCcEEEecc
Q 017815 122 RGVSFIQIPT 131 (365)
Q Consensus 122 ~g~p~i~IPT 131 (365)
.|..-+.+-+
T Consensus 102 ~Gadavlv~~ 111 (309)
T 3fkr_A 102 LGAAMVMAMP 111 (309)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEEcC
Confidence 7887777643
No 215
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=34.40 E-value=1.3e+02 Score=22.92 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=45.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhh-CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVI 109 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~-~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv 109 (365)
..+++||.|... ..+.+...|.. .| +.+.. .+. + ..++.+.+.+..+| +||. +++..-
T Consensus 5 ~~~ILivdd~~~---~~~~l~~~L~~~~~--~~v~~-~~~------~---~~~a~~~l~~~~~d---lii~D~~l~~~~g 66 (153)
T 3cz5_A 5 TARIMLVDDHPI---VREGYRRLIERRPG--YAVVA-EAA------D---AGEAYRLYRETTPD---IVVMDLTLPGPGG 66 (153)
T ss_dssp CEEEEEECSCHH---HHHHHHHHHTTSTT--EEEEE-EES------S---HHHHHHHHHTTCCS---EEEECSCCSSSCH
T ss_pred ccEEEEECCcHH---HHHHHHHHHhhCCC--cEEEE-EeC------C---HHHHHHHHhcCCCC---EEEEecCCCCCCH
Confidence 357777777654 45566667776 56 54321 222 2 34445556666666 6664 456677
Q ss_pred hhHHHHHHHHhhcCCcEEEe
Q 017815 110 GDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~I 129 (365)
.++.+.+... ...+|++.+
T Consensus 67 ~~~~~~l~~~-~~~~~ii~l 85 (153)
T 3cz5_A 67 IEATRHIRQW-DGAARILIF 85 (153)
T ss_dssp HHHHHHHHHH-CTTCCEEEE
T ss_pred HHHHHHHHHh-CCCCeEEEE
Confidence 7888777543 346777766
No 216
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=34.28 E-value=22 Score=36.46 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred CceEEEEEc--cCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCc-h--
Q 017815 34 GKKVLVVTN--NTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG-V-- 108 (365)
Q Consensus 34 ~~~~livtd--~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGG-s-- 108 (365)
++|+.|+.. .+..+.-...+.+.|+++| ++|.++....++ .++..++.......| .||--||- .
T Consensus 529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG--~~V~vVs~~~g~------~vD~t~~~~~s~~fD---AVvlPGG~~g~~ 597 (688)
T 2iuf_A 529 GLKVGLLASVNKPASIAQGAKLQVALSSVG--VDVVVVAERXAN------NVDETYSASDAVQFD---AVVVADGAEGLF 597 (688)
T ss_dssp TCEEEEECCTTCHHHHHHHHHHHHHHGGGT--CEEEEEESSCCT------TCCEESTTCCGGGCS---EEEECTTCGGGC
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHCC--CEEEEEeccCCc------ccccchhcCCccccC---eEEecCCCcccc
Confidence 688998888 6666666778889999999 777655433221 222222222223344 88888882 2
Q ss_pred --------------------HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 --------------------IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 --------------------v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
--.+..++--.+..|.|+.+|+-.
T Consensus 598 ~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~a 641 (688)
T 2iuf_A 598 GADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSG 641 (688)
T ss_dssp CTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGG
T ss_pred cccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECch
Confidence 223555555567789999988655
No 217
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=34.15 E-value=1.2e+02 Score=25.20 Aligned_cols=76 Identities=21% Similarity=0.121 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh--hHHHHHHHHhh
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG--DMCGYAAASYL 121 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~--D~ak~vA~~~~ 121 (365)
+.+.-...+.+.|.+.| +++..+ ++++ +.+.+.+.++.+.+. +| +||--||=++. |+++-+.+. .
T Consensus 20 i~DtN~~~l~~~L~~~G--~~v~~~~iv~D-----d~~~I~~~l~~a~~~-~D---lVittGG~g~~~~D~T~ea~a~-~ 87 (172)
T 3kbq_A 20 TVNTNAAFIGNFLTYHG--YQVRRGFVVMD-----DLDEIGWAFRVALEV-SD---LVVSSGGLGPTFDDMTVEGFAK-C 87 (172)
T ss_dssp SCCHHHHHHHHHHHHTT--CEEEEEEEECS-----CHHHHHHHHHHHHHH-CS---EEEEESCCSSSTTCCHHHHHHH-H
T ss_pred EEeHHHHHHHHHHHHCC--CEEEEEEEeCC-----CHHHHHHHHHHHHhc-CC---EEEEcCCCcCCcccchHHHHHH-H
Confidence 34456777888899999 766543 3443 456777766666543 56 99999987664 556544322 2
Q ss_pred cCCcEEEeccc
Q 017815 122 RGVSFIQIPTT 132 (365)
Q Consensus 122 ~g~p~i~IPTT 132 (365)
.+.++..-|-+
T Consensus 88 ~~~~l~~~~e~ 98 (172)
T 3kbq_A 88 IGQDLRIDEDA 98 (172)
T ss_dssp HTCCCEECHHH
T ss_pred cCCCeeeCHHH
Confidence 34444444443
No 218
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=34.10 E-value=94 Score=24.90 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=50.9
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHH----HHHHHHHHHcCCCCcceEEEecCchH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL----MKVFDKAIESRLDRRCTFVALGGGVI 109 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v----~~~~~~~~~~~~dr~~~IIaiGGGsv 109 (365)
++|+.|+.-++....-.-...+.|..+| +++.++... +.+-.+...+ ....+.+....+| .||-.||...
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~-~~~v~~~~g~~i~~~~~~~~~~~~~~D---~livpGG~~~ 75 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEG--HEVYVASFQ-RGKITGKHGYSVNVDLTFEEVDPDEFD---ALVLPGGKAP 75 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTT--CEEEEEESS-SEEEECTTSCEEEECEEGGGCCGGGCS---EEEECCBSHH
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCC--CEEEEEECC-CCEEecCCCcEEeccCChhHCCHhhCC---EEEECCCcCH
Confidence 4677777777766553444556677788 777654332 2211110000 0000000111234 8887787544
Q ss_pred hh------HHHHHHHHhhcCCcEEEecccc
Q 017815 110 GD------MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 110 ~D------~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.+ +..++...+..+.++.+|+|..
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~ 105 (168)
T 3l18_A 76 EIVRLNEKAVMITRRMFEDDKPVASICHGP 105 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEETTTH
T ss_pred HHhccCHHHHHHHHHHHHCCCEEEEECHhH
Confidence 32 3455666677899999999874
No 219
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=34.10 E-value=1.6e+02 Score=26.35 Aligned_cols=86 Identities=17% Similarity=0.099 Sum_probs=54.3
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 17 g~iD~~~l~~lv~~li~~G--v~gl-~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~ 93 (292)
T 2ojp_A 17 GNVCRASLKKLIDYHVASG--TSAI-VSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFN 93 (292)
T ss_dssp SCBCHHHHHHHHHHHHHHT--CCEE-EESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEE-EECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHH
Confidence 3444445566666666667 5432 222 23553 46777777888887765334455999999999888877765555
Q ss_pred hcCCcEEEecc
Q 017815 121 LRGVSFIQIPT 131 (365)
Q Consensus 121 ~~g~p~i~IPT 131 (365)
..|..-+.+.+
T Consensus 94 ~~Gadavlv~~ 104 (292)
T 2ojp_A 94 DSGIVGCLTVT 104 (292)
T ss_dssp TSSCSEEEEEC
T ss_pred hcCCCEEEECC
Confidence 66777666543
No 220
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=34.02 E-value=1.3e+02 Score=25.17 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhh---CCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEEecCchHh--hHHHHH
Q 017815 47 PLYLDKVTDALTR---GNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 47 ~~~~~~v~~~L~~---~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
+.-...+.+.|++ .| +++..+ ++++ +.+.+.+.++.+.+ .++| +||--||=++. |+++-+
T Consensus 33 D~n~~~L~~~L~~~~~~G--~~v~~~~iv~D-----d~~~I~~al~~a~~~~~~D---lVIttGGtg~g~~D~t~ea 99 (189)
T 1jlj_A 33 DRSGINLKDLVQDPSLLG--GTISAYKIVPD-----EIEEIKETLIDWCDEKELN---LILTTGGTGFAPRDVTPEA 99 (189)
T ss_dssp CHHHHHHHHHHHCTTTTC--CEEEEEEEECS-----CHHHHHHHHHHHHHTSCCS---EEEEESCCSSSTTCCHHHH
T ss_pred chHHHHHHHHHhchhcCC--cEEEEEEEeCC-----CHHHHHHHHHHHhhcCCCC---EEEEcCCCCCCCcccHHHH
Confidence 4456677778877 67 665432 3443 45677777766654 3566 99999998776 777654
No 221
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=33.97 E-value=1.3e+02 Score=21.55 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=42.8
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
++++||.|... ..+.+...|...| +++. ... + ..+..+.+.+..+| +|+- +.+..-.+
T Consensus 2 ~~ilivdd~~~---~~~~l~~~l~~~~--~~v~--~~~------~---~~~a~~~~~~~~~d---lvl~D~~l~~~~g~~ 62 (120)
T 2a9o_A 2 KKILIVDDEKP---ISDIIKFNMTKEG--YEVV--TAF------N---GREALEQFEAEQPD---IIILDLMLPEIDGLE 62 (120)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHHHCCS---EEEECSSCSSSCHHH
T ss_pred ceEEEEcCCHH---HHHHHHHHHHhcC--cEEE--Eec------C---HHHHHHHHHhCCCC---EEEEeccCCCCCHHH
Confidence 36777777643 3455566677677 5542 222 2 23344455556666 6652 45666678
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+.. ...+|++.+
T Consensus 63 ~~~~l~~--~~~~~ii~~ 78 (120)
T 2a9o_A 63 VAKTIRK--TSSVPILML 78 (120)
T ss_dssp HHHHHHH--HCCCCEEEE
T ss_pred HHHHHHh--CCCCCEEEE
Confidence 8877743 356777766
No 222
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=33.97 E-value=91 Score=25.45 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=37.2
Q ss_pred HHHHHHHH----HhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh--hHHHHH
Q 017815 49 YLDKVTDA----LTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 49 ~~~~v~~~----L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
-...+.+. |.+.| +++..+ ++++ +.+.+.+.++.+.+.++| +||--||=++. |+++-+
T Consensus 26 n~~~l~~~~~~~l~~~G--~~v~~~~iv~D-----d~~~I~~~l~~a~~~~~D---lVittGG~g~~~~D~t~ea 90 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYS--YELISEVVVPE-----GYDTVVEAIATALKQGAR---FIITAGGTGIRAKNQTPEA 90 (167)
T ss_dssp HHHHHHHHHCC----CE--EEEEEEEEECS-----SHHHHHHHHHHHHHTTCS---EEEEESCCSSSTTCCHHHH
T ss_pred HHHHHHHhHHhHHHHCC--CEEeEEEEeCC-----CHHHHHHHHHHHHhCCCC---EEEECCCCCCCCCcChHHH
Confidence 45667777 88888 666433 4444 556777777776664567 99999998766 776654
No 223
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=33.95 E-value=1.8e+02 Score=25.33 Aligned_cols=85 Identities=16% Similarity=0.084 Sum_probs=52.6
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+.+-++.... .+..+.+.+.+.+.+.| +++.++ .. .. +.+.-.+.++.+...++| .||-.+....-+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~-~~--~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~ 85 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHS--TDVLLG--QI-DA--PPRGTQQLSRLVSEGRVD---GVLLQRREDFDD 85 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTT--CCEEEE--EC-CS--TTHHHHHHHHHHHSCSSS---EEEECCCTTCCH
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCC--CEEEEE--eC-CC--ChHHHHHHHHHHHhCCCc---EEEEecCCCCcH
Confidence 3454444322 34457777888888888 765433 22 11 345557778888888888 888887654433
Q ss_pred -HHHHHHHHhhcCCcEEEecccc
Q 017815 112 -MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 112 -~ak~vA~~~~~g~p~i~IPTTl 133 (365)
..+ .... ++|+|.+-...
T Consensus 86 ~~~~---~l~~-~iPvV~i~~~~ 104 (303)
T 3kke_A 86 DMLA---AVLE-GVPAVTINSRV 104 (303)
T ss_dssp HHHH---HHHT-TSCEEEESCCC
T ss_pred HHHH---HHhC-CCCEEEECCcC
Confidence 222 2334 99999997663
No 224
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=33.92 E-value=2.2e+02 Score=26.50 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCc-hHhhHHHHHHHHhhcCCcEEEecccccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGG-VIGDMCGYAAASYLRGVSFIQIPTTVMA 135 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGG-sv~D~ak~vA~~~~~g~p~i~IPTTl~A 135 (365)
|+++.+.++.+.+.+.++. |||-||= +.-|++|+++ .|...+.+-|.+..
T Consensus 191 p~~~~i~~v~~~~~~~~iP----VIA~GGI~~~~di~kala----~GAd~V~vGs~~~~ 241 (361)
T 3khj_A 191 PQITAIEKCSSVASKFGIP----IIADGGIRYSGDIGKALA----VGASSVMIGSILAG 241 (361)
T ss_dssp CHHHHHHHHHHHHHHHTCC----EEEESCCCSHHHHHHHHH----HTCSEEEESTTTTT
T ss_pred CcHHHHHHHHHHHhhcCCe----EEEECCCCCHHHHHHHHH----cCCCEEEEChhhhc
Confidence 5677777777666666665 8888884 6889988775 38889999888743
No 225
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=33.80 E-value=1.3e+02 Score=25.48 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCCCce---EEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHh--hHHHHH
Q 017815 49 YLDKVTDALTRGNPNVS---VENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~---v~~~~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
-...+.+.|++.| ++ +...++++ +.+.+.+.++.+.+. ++| +||--||=++. |+++-+
T Consensus 24 n~~~L~~~L~~~G--~~~~v~~~~iV~D-----d~~~I~~al~~a~~~~~~D---lVitTGGtg~g~~D~T~ea 87 (195)
T 1di6_A 24 GIPALEEWLTSAL--TTPFELETRLIPD-----EQAIIEQTLCELVDEMSCH---LVLTTGGTGPARRDVTPDA 87 (195)
T ss_dssp HHHHHHHHHHHHB--CSCEEEEEEEEES-----CHHHHHHHHHHHHHTSCCS---EEEEESCCSSSTTCCHHHH
T ss_pred HHHHHHHHHHHcC--CCCceEEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCCCCCCCccHHHH
Confidence 4566777788777 44 23334554 456777766666553 567 99999998776 777654
No 226
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=33.80 E-value=2.2e+02 Score=24.26 Aligned_cols=86 Identities=7% Similarity=0.096 Sum_probs=51.2
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+.+.+.+++.| +++.+ ++. ..+.+...+.++.+.+.++| .||..+....-.
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~--~~~---~~~~~~~~~~~~~l~~~~vd---gii~~~~~~~~~ 77 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKG--YTLIL--GNA---WNNLEKQRAYLSMMAQKRVD---GLLVMCSEYPEP 77 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHT--CEEEE--EEC---TTCHHHHHHHHHHHHHTTCS---EEEEECSCCCHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcC--CeEEE--EcC---CCChHHHHHHHHHHHhCCCC---EEEEEeccCCHH
Confidence 4555555322 23335666777777878 66543 222 12556666777888888888 888877543222
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
..+.+. -..++|+|.+-..
T Consensus 78 ~~~~l~--~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 78 LLAMLE--EYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHH--HTTTSCEEEEECS
T ss_pred HHHHHH--hccCCCEEEEccC
Confidence 333331 1268999998665
No 227
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=33.68 E-value=2.3e+02 Score=24.41 Aligned_cols=74 Identities=11% Similarity=-0.044 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+.+-+.+.+++.| +++. .+.. .+.+.-.+.++.+.+.++| .||-.+.... .....+......|+|+
T Consensus 18 ~~~~~gi~~~a~~~g--~~~~--~~~~----~~~~~~~~~i~~l~~~~vd---giii~~~~~~-~~~~~~~~~~~~~iPv 85 (306)
T 8abp_A 18 QTEWKFADKAGKDLG--FEVI--KIAV----PDGEKTLNAIDSLAASGAK---GFVICTPDPK-LGSAIVAKARGYDMKV 85 (306)
T ss_dssp HHHHHHHHHHHHHHT--EEEE--EEEC----CSHHHHHHHHHHHHHTTCC---EEEEECSCGG-GHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcC--CEEE--EeCC----CCHHHHHHHHHHHHHcCCC---EEEEeCCCch-hhHHHHHHHHHCCCcE
Confidence 335666777778878 6653 3332 1556667777888888888 8887775432 2222222234579999
Q ss_pred EEeccc
Q 017815 127 IQIPTT 132 (365)
Q Consensus 127 i~IPTT 132 (365)
|.+-+.
T Consensus 86 V~~~~~ 91 (306)
T 8abp_A 86 IAVDDQ 91 (306)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 998654
No 228
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.52 E-value=2.6e+02 Score=24.90 Aligned_cols=87 Identities=8% Similarity=0.096 Sum_probs=49.6
Q ss_pred ceEEEEEccC----chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH--cCCCCcceEEEecCch
Q 017815 35 KKVLVVTNNT----VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE--SRLDRRCTFVALGGGV 108 (365)
Q Consensus 35 ~~~livtd~~----~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~--~~~dr~~~IIaiGGGs 108 (365)
.++.++.... .+..+.+-+.+.+++.| +++.++ .. + .+.+.-.+.++.+.. .++| .||-++...
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g--~~~~~~--~~-~--~~~~~~~~~i~~~i~~~~~vD---giIi~~~~~ 73 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLG--LDLRIL--YA-E--RDPQNTLQQARELFQGRDKPD---YLMLVNEQY 73 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHT--CEEEEE--EC-T--TCHHHHHHHHHHHHHSSSCCS---EEEEECCSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcC--CeEEEE--EC-C--CCHHHHHHHHHHHHhcCCCCC---EEEEeCchh
Confidence 3455555432 23345666777778878 665433 22 1 244454555555555 5888 888886333
Q ss_pred HhhHHHHHHHHhhcCCcEEEecccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.. ...+..+...|+|+|.+-...
T Consensus 74 ~~--~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 74 VA--PQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp HH--HHHHHHHTTSCCEEEEEESCC
T ss_pred hH--HHHHHHHHhCCCcEEEEcCCC
Confidence 22 222333345799999987664
No 229
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=33.48 E-value=1.3e+02 Score=24.51 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=36.1
Q ss_pred HHHHHHHhhC-----CCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEEecCchHh--hHHHHH
Q 017815 51 DKVTDALTRG-----NPNVSVENV-ILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIG--DMCGYA 116 (365)
Q Consensus 51 ~~v~~~L~~~-----g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIaiGGGsv~--D~ak~v 116 (365)
..+.+.|++. | +++..+ ++++ +.+.+.+.++.+.+ .++| +||--||=++. |.++-+
T Consensus 28 ~~l~~~l~~~~~~~~G--~~v~~~~iv~D-----d~~~i~~~l~~~~~~~~~D---lVittGG~g~g~~D~t~~a 92 (167)
T 1uuy_A 28 PRAVSVVDSSSEKLGG--AKVVATAVVPD-----EVERIKDILQKWSDVDEMD---LILTLGGTGFTPRDVTPEA 92 (167)
T ss_dssp HHHHHHHHHTTTTTTS--EEEEEEEEECS-----CHHHHHHHHHHHHHTSCCS---EEEEESCCSSSTTCCHHHH
T ss_pred HHHHHHHHhccccCCC--cEEeEEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCCCCCCCCchHHH
Confidence 3445556655 7 665433 3443 55677777776665 4667 99999998776 776654
No 230
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=33.41 E-value=1.6e+02 Score=22.40 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=45.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
-|++||.|... ..+.+.+.|...+ -...+..+. +..++.+.+.+..+| +||. +.+...++
T Consensus 21 ~~iLivdd~~~---~~~~l~~~L~~~~--~~~~v~~~~---------~~~~al~~l~~~~~d---lii~D~~l~~~~g~~ 83 (150)
T 4e7p_A 21 MKVLVAEDQSM---LRDAMCQLLTLQP--DVESVLQAK---------NGQEAIQLLEKESVD---IAILDVEMPVKTGLE 83 (150)
T ss_dssp EEEEEECSCHH---HHHHHHHHHHTST--TEEEEEEES---------SHHHHHHHHTTSCCS---EEEECSSCSSSCHHH
T ss_pred cEEEEEcCCHH---HHHHHHHHHHhCC--CcEEEEEEC---------CHHHHHHHhhccCCC---EEEEeCCCCCCcHHH
Confidence 46777777654 3455666676654 112222222 334555566666776 6663 46778888
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+.+.+... ...+|+|.+
T Consensus 84 ~~~~l~~~-~~~~~ii~l 100 (150)
T 4e7p_A 84 VLEWIRSE-KLETKVVVV 100 (150)
T ss_dssp HHHHHHHT-TCSCEEEEE
T ss_pred HHHHHHHh-CCCCeEEEE
Confidence 88877532 346777666
No 231
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=33.40 E-value=2.3e+02 Score=24.35 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+.+-+.+.+++.| +++. .+.... .+.+...+.++.+...++| .||..+..+ -.....+......++|+
T Consensus 20 ~~~~~g~~~~~~~~g--~~~~--~~~~~~--~~~~~~~~~~~~l~~~~vd---giii~~~~~-~~~~~~~~~~~~~~ipv 89 (303)
T 3d02_A 20 NRMGEGVVQAGKEFN--LNAS--QVGPSS--TDAPQQVKIIEDLIARKVD---AITIVPNDA-NVLEPVFKKARDAGIVV 89 (303)
T ss_dssp HHHHHHHHHHHHHTT--EEEE--EECCSS--SCHHHHHHHHHHHHHTTCS---EEEECCSCH-HHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcC--CEEE--EECCCC--CCHHHHHHHHHHHHHcCCC---EEEEecCCh-HHHHHHHHHHHHCCCeE
Confidence 335666777788888 6543 222222 2455666677777788888 887766532 12222222233479999
Q ss_pred EEeccc
Q 017815 127 IQIPTT 132 (365)
Q Consensus 127 i~IPTT 132 (365)
|.+-+.
T Consensus 90 V~~~~~ 95 (303)
T 3d02_A 90 LTNESP 95 (303)
T ss_dssp EEESCT
T ss_pred EEEecC
Confidence 998554
No 232
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=33.05 E-value=54 Score=27.60 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=38.3
Q ss_pred ceEEEEEc---cCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017815 35 KKVLVVTN---NTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 90 (365)
Q Consensus 35 ~~~livtd---~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~ 90 (365)
..++++.+ +.+.-...++..+.|++.| .++++.++++..+.=+.++++.+.+++
T Consensus 152 ~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g--~~v~~~~ypg~gH~i~~~el~~i~~wL 208 (210)
T 4h0c_A 152 TPVFISTGNPDPHVPVSRVQESVTILEDMN--AAVSQVVYPGRPHTISGDEIQLVNNTI 208 (210)
T ss_dssp CEEEEEEEESCTTSCHHHHHHHHHHHHHTT--CEEEEEEEETCCSSCCHHHHHHHHHTT
T ss_pred CceEEEecCCCCccCHHHHHHHHHHHHHCC--CCeEEEEECCCCCCcCHHHHHHHHHHH
Confidence 45777764 4454457888888999998 788877888755656777777766554
No 233
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=32.97 E-value=1.5e+02 Score=22.14 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=44.0
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|.... .+.+...|...| +++ ..+. + ..++.+.+.+..+| +||- +.+..-++
T Consensus 5 ~~ILivdd~~~~---~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lvllD~~l~~~~g~~ 65 (137)
T 3cfy_A 5 PRVLLVEDSTSL---AILYKQYVKDEP--YDI--FHVE------T---GRDAIQFIERSKPQ---LIILDLKLPDMSGED 65 (137)
T ss_dssp CEEEEECSCTTH---HHHHHHHTTTSS--SEE--EEES------S---HHHHHHHHHHHCCS---EEEECSBCSSSBHHH
T ss_pred ceEEEEeCCHHH---HHHHHHHHHhcC--ceE--EEeC------C---HHHHHHHHHhcCCC---EEEEecCCCCCCHHH
Confidence 378888877653 445566676667 654 2232 2 33444555566676 6663 45667778
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+... ...+|++.+
T Consensus 66 l~~~l~~~-~~~~~ii~l 82 (137)
T 3cfy_A 66 VLDWINQN-DIPTSVIIA 82 (137)
T ss_dssp HHHHHHHT-TCCCEEEEE
T ss_pred HHHHHHhc-CCCCCEEEE
Confidence 88776432 345666665
No 234
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=32.94 E-value=46 Score=34.14 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=55.5
Q ss_pred CCceEEEEEccC-chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH--
Q 017815 33 QGKKVLVVTNNT-VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI-- 109 (365)
Q Consensus 33 ~~~~~livtd~~-~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv-- 109 (365)
.++|+.|+...+ ..+.-...+.+.|+++| +.+.++....+. .++..++....... |.||-.||-..
T Consensus 536 ~grKVaILvadG~fE~~El~~p~~aL~~aG--a~V~vVsp~~g~------GvD~t~~~~~s~~f---DAVvlPGG~~~~~ 604 (688)
T 3ej6_A 536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDG--LKVTVIAEYLAS------GVDQTYSAADATAF---DAVVVAEGAERVF 604 (688)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHTT--CEEEEEESSCCT------TCCEETTTCCGGGC---SEEEECTTCCTTT
T ss_pred cCCEEEEEccCCCccHHHHHHHHHHHHHCC--CEEEEEeCCCCC------CcccCcccCChhcC---cEEEECCCccccc
Confidence 368888887766 55556677888999999 777654333331 02222221122223 48888888322
Q ss_pred ------------hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 ------------GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ------------~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
-++..|+...+..++|+.+|+-.
T Consensus 605 ~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchg 639 (688)
T 3ej6_A 605 SGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSA 639 (688)
T ss_dssp STTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGG
T ss_pred ccccchhhhccCHHHHHHHHHHHHcCCEEEEeCcc
Confidence 25666777778899999999755
No 235
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=32.92 E-value=2.3e+02 Score=26.41 Aligned_cols=85 Identities=7% Similarity=0.024 Sum_probs=54.6
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++- +++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+.
T Consensus 75 g~ID~~al~~lv~~li~~G--v~G-l~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~ 151 (360)
T 4dpp_A 75 GRFDLEAYDDLVNIQIQNG--AEG-VIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGF 151 (360)
T ss_dssp SSBCHHHHHHHHHHHHHTT--CCE-EEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCE-EEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH
Confidence 3444446667777777778 543 2222 33553 44667777777777765444555899999999888887776556
Q ss_pred hcCCcEEEec
Q 017815 121 LRGVSFIQIP 130 (365)
Q Consensus 121 ~~g~p~i~IP 130 (365)
..|..-+.+.
T Consensus 152 ~~Gadavlvv 161 (360)
T 4dpp_A 152 AVGMHAALHI 161 (360)
T ss_dssp HTTCSEEEEE
T ss_pred HcCCCEEEEc
Confidence 6777666653
No 236
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=32.92 E-value=62 Score=24.68 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=27.0
Q ss_pred CceEEEEEccCchHH--HHHHHHHHHhhCCCCceEEEE
Q 017815 34 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENV 69 (365)
Q Consensus 34 ~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~v~~~ 69 (365)
.+|+++||+.++.-. +..++++.+++.| +++.+.
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~g--i~~~V~ 56 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHN--IPVELI 56 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcC--CeEEEE
Confidence 468999999998765 5899999999988 654433
No 237
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=32.75 E-value=2.6e+02 Score=24.78 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=52.4
Q ss_pred eEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 36 KVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 36 ~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
.+-++... ..+..+.+-+.+.+.+.| +++.+ +.. +.+.+.-.+.++.+.+.++| .||-.+....-+.
T Consensus 64 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~--~~~---~~~~~~~~~~~~~l~~~~vd---GiIi~~~~~~~~~ 133 (339)
T 3h5o_A 64 TVLVLIPSLANTVFLETLTGIETVLDAAG--YQMLI--GNS---HYDAGQELQLLRAYLQHRPD---GVLITGLSHAEPF 133 (339)
T ss_dssp EEEEEESCSTTCTTHHHHHHHHHHHHHTT--CEEEE--EEC---TTCHHHHHHHHHHHHTTCCS---EEEEECSCCCTTH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHCC--CEEEE--EeC---CCChHHHHHHHHHHHcCCCC---EEEEeCCCCCHHH
Confidence 45555432 234457778888888988 66543 222 12456667778888888888 8888775443333
Q ss_pred HHHHHHHhhcCCcEEEecc
Q 017815 113 CGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPT 131 (365)
.+. ....++|+|.+-.
T Consensus 134 ~~~---l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 134 ERI---LSQHALPVVYMMD 149 (339)
T ss_dssp HHH---HHHTTCCEEEEES
T ss_pred HHH---HhcCCCCEEEEee
Confidence 332 2357999999843
No 238
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=32.48 E-value=1.4e+02 Score=21.53 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=43.3
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
++++||.|... ..+.+...|...| +++. ... +. .+..+.+.+..+| +||- +.+..-++
T Consensus 2 ~~ilivdd~~~---~~~~l~~~L~~~~--~~v~--~~~------~~---~~a~~~~~~~~~d---lvi~D~~l~~~~g~~ 62 (124)
T 1mb3_A 2 KKVLIVEDNEL---NMKLFHDLLEAQG--YETL--QTR------EG---LSALSIARENKPD---LILMDIQLPEISGLE 62 (124)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------CH---HHHHHHHHHHCCS---EEEEESBCSSSBHHH
T ss_pred cEEEEEcCCHH---HHHHHHHHHHHcC--cEEE--EeC------CH---HHHHHHHhcCCCC---EEEEeCCCCCCCHHH
Confidence 46777777654 3455566666677 5542 222 22 3344455556666 6652 45666678
Q ss_pred HHHHHHHHh-hcCCcEEEe
Q 017815 112 MCGYAAASY-LRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~-~~g~p~i~I 129 (365)
+++.+.... ...+|++.+
T Consensus 63 ~~~~l~~~~~~~~~~ii~~ 81 (124)
T 1mb3_A 63 VTKWLKEDDDLAHIPVVAV 81 (124)
T ss_dssp HHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHcCccccCCcEEEE
Confidence 887764321 235777776
No 239
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=32.34 E-value=99 Score=27.51 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=39.7
Q ss_pred ceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc
Q 017815 35 KKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES 93 (365)
Q Consensus 35 ~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~ 93 (365)
..++++.+. .+.-...++..+.|++.| +++.+.++++..+.-+.+++..+.+++++.
T Consensus 206 ~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g--~~~~~~~y~g~gH~i~~~~l~~~~~fL~~~ 265 (285)
T 4fhz_A 206 PPVLLVHGDADPVVPFADMSLAGEALAEAG--FTTYGHVMKGTGHGIAPDGLSVALAFLKER 265 (285)
T ss_dssp CCEEEEEETTCSSSCTHHHHHHHHHHHHTT--CCEEEEEETTCCSSCCHHHHHHHHHHHHHH
T ss_pred CcccceeeCCCCCcCHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 357777643 343346777788888888 777777777655556778888888888764
No 240
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=32.23 E-value=2e+02 Score=25.69 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhc
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 122 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~ 122 (365)
+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+...
T Consensus 19 iD~~~l~~lv~~li~~G--v~gl-~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~ 95 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSK--TDAI-IVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESI 95 (291)
T ss_dssp BCHHHHHHHHHHHHHTT--CCEE-EESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhc
Confidence 43335666666676777 5432 222 23553 4567777788887776433445599999998888877766555667
Q ss_pred CCcEEEeccc
Q 017815 123 GVSFIQIPTT 132 (365)
Q Consensus 123 g~p~i~IPTT 132 (365)
|..-+.+.+-
T Consensus 96 Gadavlv~~P 105 (291)
T 3a5f_A 96 GVDGLLVITP 105 (291)
T ss_dssp TCSEEEEECC
T ss_pred CCCEEEEcCC
Confidence 8877766443
No 241
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=31.80 E-value=25 Score=33.16 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHcCCCC
Q 017815 291 IVKRVHNILQQAKLPT 306 (365)
Q Consensus 291 ~~~~i~~ll~~lglp~ 306 (365)
..+++.++.+.+|++.
T Consensus 300 ~~~~~~~la~~lg~~~ 315 (387)
T 3bfj_A 300 NPEKFADIAELMGENI 315 (387)
T ss_dssp CHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHhCCCC
Confidence 3456777778888763
No 242
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=31.66 E-value=1.4e+02 Score=21.38 Aligned_cols=76 Identities=17% Similarity=0.049 Sum_probs=42.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+.+.|...| +++ +..+. + ..+..+.+.+..+| +|+- +.+..-.+
T Consensus 3 ~~ilivdd~~~---~~~~l~~~l~~~g--~~v-v~~~~------~---~~~a~~~~~~~~~d---lil~D~~l~~~~g~~ 64 (120)
T 1tmy_A 3 KRVLIVDDAAF---MRMMLKDIITKAG--YEV-AGEAT------N---GREAVEKYKELKPD---IVTMDITMPEMNGID 64 (120)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEE-EEEES------S---HHHHHHHHHHHCCS---EEEEECSCGGGCHHH
T ss_pred ceEEEEcCcHH---HHHHHHHHHhhcC--cEE-EEEEC------C---HHHHHHHHHhcCCC---EEEEeCCCCCCcHHH
Confidence 47787777654 3455566676777 653 12222 2 23344445556666 6552 34555567
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+.+.+... ...+|++.+
T Consensus 65 ~~~~l~~~-~~~~~ii~~ 81 (120)
T 1tmy_A 65 AIKEIMKI-DPNAKIIVC 81 (120)
T ss_dssp HHHHHHHH-CTTCCEEEE
T ss_pred HHHHHHhh-CCCCeEEEE
Confidence 77766432 346777766
No 243
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=31.54 E-value=1.4e+02 Score=26.69 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=56.0
Q ss_pred EccCchHHHHHHHHHHHhhCCCCceEEEEEeC--CCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHH
Q 017815 41 TNNTVAPLYLDKVTDALTRGNPNVSVENVILP--DGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAA 117 (365)
Q Consensus 41 td~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~--~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA 117 (365)
.|..+.....+++.+.+-++| ++- +.+- .||. .=|.++-.++++.+.+.-..|--+|+++|+.++-|+...+.
T Consensus 14 ~dg~iD~~~l~~lv~~li~~G--v~g--l~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~ 89 (292)
T 2vc6_A 14 ADDRIDEVALHDLVEWQIEEG--SFG--LVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVR 89 (292)
T ss_dssp ETTEECHHHHHHHHHHHHHTT--CSE--EETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcC--CCE--EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHH
Confidence 355555445666667676777 543 3222 2453 46777777888887765333445999999988888777665
Q ss_pred HHhhcCCcEEEecc
Q 017815 118 ASYLRGVSFIQIPT 131 (365)
Q Consensus 118 ~~~~~g~p~i~IPT 131 (365)
.+...|..-+.+.+
T Consensus 90 ~A~~~Gadavlv~~ 103 (292)
T 2vc6_A 90 HAQNAGADGVLIVS 103 (292)
T ss_dssp HHHHTTCSEEEEEC
T ss_pred HHHHcCCCEEEEcC
Confidence 55567877666543
No 244
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=31.53 E-value=2.5e+02 Score=24.15 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=51.2
Q ss_pred ceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+.+-++... ..+..+.+-+.+.+++.| +++.+ +.. +.+.+.-.+.++.+.+.++| .||-.+....-+
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~--~~~---~~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~ 86 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYK--YNIIL--SNS---DQNMEKELHLLNTMLGKQVD---GIVFMGGNITDE 86 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTT--CEEEE--EEC---TTCHHHHHHHHHHHHHTTCS---EEEECCSCCCHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcC--CEEEE--EeC---CCCHHHHHHHHHHHHhCCCC---EEEEecCCCCHH
Confidence 345555432 123346677777888888 66543 222 12455666777888888888 888877533222
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
..+. ....++|+|.+-..
T Consensus 87 ~~~~---l~~~~iPvV~~~~~ 104 (289)
T 2fep_A 87 HVAE---FKRSPVPIVLAASV 104 (289)
T ss_dssp HHHH---HHHSSSCEEEESCC
T ss_pred HHHH---HHhcCCCEEEEccc
Confidence 2222 22479999998665
No 245
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=31.49 E-value=2.2e+02 Score=25.57 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=58.6
Q ss_pred EccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCC-CcceEEEecCchHhhHHHHHH
Q 017815 41 TNNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLD-RRCTFVALGGGVIGDMCGYAA 117 (365)
Q Consensus 41 td~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~d-r~~~IIaiGGGsv~D~ak~vA 117 (365)
.|..+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.+.+.-.. |--+|+++|+-++-|+...+.
T Consensus 21 ~dg~iD~~~l~~lv~~li~~G--v~gl-~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~ 97 (301)
T 3m5v_A 21 KNGKVDEQSYARLIKRQIENG--IDAV-VPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAK 97 (301)
T ss_dssp ETTEECHHHHHHHHHHHHHTT--CCEE-ECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHH
Confidence 355555445666667776778 5432 222 2355 345677778888888775434 445999999999988888776
Q ss_pred HHhhcCCcEEEeccc
Q 017815 118 ASYLRGVSFIQIPTT 132 (365)
Q Consensus 118 ~~~~~g~p~i~IPTT 132 (365)
.+...|..-+.+.+-
T Consensus 98 ~a~~~Gadavlv~~P 112 (301)
T 3m5v_A 98 FAKEHGADGILSVAP 112 (301)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHHcCCCEEEEcCC
Confidence 666678777666443
No 246
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=31.38 E-value=1.6e+02 Score=26.39 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=55.1
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+.++-|+...+..+..
T Consensus 19 ~iD~~~l~~lv~~li~~G--v~gl-~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~ 95 (292)
T 3daq_A 19 KVNLEALKAHVNFLLENN--AQAI-IVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKA 95 (292)
T ss_dssp EECHHHHHHHHHHHHHTT--CCEE-EESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcC--CCEE-EECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHH
Confidence 333335566666666777 5432 222 23553 446777778888877754445559999999999888887766666
Q ss_pred cCCcEEEecc
Q 017815 122 RGVSFIQIPT 131 (365)
Q Consensus 122 ~g~p~i~IPT 131 (365)
.|..-+.+.+
T Consensus 96 ~Gadavlv~~ 105 (292)
T 3daq_A 96 LGADAIMLIT 105 (292)
T ss_dssp HTCSEEEEEC
T ss_pred cCCCEEEECC
Confidence 6877666543
No 247
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=31.38 E-value=1.5e+02 Score=21.82 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=42.1
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhC-CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~-g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
.+++||.|... ..+.+.+.|... | +.+. .... + ..++.+.+.+..+| +|+- +.+..-.
T Consensus 3 ~~ilivdd~~~---~~~~l~~~l~~~~~--~~~~-~~~~------~---~~~a~~~~~~~~~d---lvllD~~l~~~~g~ 64 (130)
T 1dz3_A 3 IKVCIADDNRE---LVSLLDEYISSQPD--MEVI-GTAY------N---GQDCLQMLEEKRPD---ILLLDIIMPHLDGL 64 (130)
T ss_dssp EEEEEECSCHH---HHHHHHHHHHTSTT--EEEE-EEES------S---HHHHHHHHHHHCCS---EEEEESCCSSSCHH
T ss_pred eEEEEEcCCHH---HHHHHHHHHHhCCC--ceEE-EEeC------C---HHHHHHHHhcCCCC---EEEEecCCCCCCHH
Confidence 36777766643 345556666665 5 4431 1222 2 33444455556666 6653 4566677
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++.+.+........|++.+
T Consensus 65 ~~~~~l~~~~~~~~~ii~l 83 (130)
T 1dz3_A 65 AVLERIRAGFEHQPNVIML 83 (130)
T ss_dssp HHHHHHHHHCSSCCEEEEE
T ss_pred HHHHHHHhcCCCCCcEEEE
Confidence 8888775422345666665
No 248
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=31.33 E-value=1.6e+02 Score=25.66 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEE
Q 017815 48 LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 127 (365)
Q Consensus 48 ~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i 127 (365)
.+.+.+.+.+.+.| +++. ++. .. .+.+.-.+..+.+.+.++| .||-++....-+..+. ....++|+|
T Consensus 44 ~~~~gi~~~a~~~g--~~~~--~~~-~~--~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~~~~~---l~~~~iPvV 110 (305)
T 3huu_A 44 DVLNGINQACNVRG--YSTR--MTV-SE--NSGDLYHEVKTMIQSKSVD---GFILLYSLKDDPIEHL---LNEFKVPYL 110 (305)
T ss_dssp HHHHHHHHHHHHHT--CEEE--ECC-CS--SHHHHHHHHHHHHHTTCCS---EEEESSCBTTCHHHHH---HHHTTCCEE
T ss_pred HHHHHHHHHHHHCC--CEEE--EEe-CC--CChHHHHHHHHHHHhCCCC---EEEEeCCcCCcHHHHH---HHHcCCCEE
Confidence 35666777788888 6543 332 22 2445567788888888888 8888876543333332 335799999
Q ss_pred Eeccc
Q 017815 128 QIPTT 132 (365)
Q Consensus 128 ~IPTT 132 (365)
.+-..
T Consensus 111 ~i~~~ 115 (305)
T 3huu_A 111 IVGKS 115 (305)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 98666
No 249
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=31.26 E-value=1.7e+02 Score=26.50 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=56.1
Q ss_pred ccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 42 NNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 42 d~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
|..+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+
T Consensus 27 dg~iD~~~l~~lv~~li~~G--v~gl-~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A 103 (306)
T 1o5k_A 27 NGELDLESYERLVRYQLENG--VNAL-IVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQA 103 (306)
T ss_dssp TTEECHHHHHHHHHHHHHTT--CCEE-EESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcC--CCEE-EeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHH
Confidence 55555445667777777778 5532 222 23553 5677777788887776433444599999998887776666555
Q ss_pred hhcCCcEEEeccc
Q 017815 120 YLRGVSFIQIPTT 132 (365)
Q Consensus 120 ~~~g~p~i~IPTT 132 (365)
...|..-+.+.+-
T Consensus 104 ~~~Gadavlv~~P 116 (306)
T 1o5k_A 104 EKLGANGVLVVTP 116 (306)
T ss_dssp HHHTCSEEEEECC
T ss_pred HhcCCCEEEECCC
Confidence 5568777666433
No 250
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=31.15 E-value=2.6e+02 Score=25.14 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+..
T Consensus 31 ~iD~~~l~~lv~~li~~G--v~Gl-~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~ 107 (307)
T 3s5o_A 31 EVDYGKLEENLHKLGTFP--FRGF-VVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQ 107 (307)
T ss_dssp CBCHHHHHHHHHHHTTSC--CSEE-EESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcC--CCEE-EECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence 444445666777777778 5432 222 2355 3567788888999888864455568999999888888777665666
Q ss_pred cCCcEEEec
Q 017815 122 RGVSFIQIP 130 (365)
Q Consensus 122 ~g~p~i~IP 130 (365)
.|..-+.+-
T Consensus 108 ~Gadavlv~ 116 (307)
T 3s5o_A 108 VGADAAMVV 116 (307)
T ss_dssp TTCSEEEEE
T ss_pred cCCCEEEEc
Confidence 788777763
No 251
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=31.12 E-value=1.5e+02 Score=24.49 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=51.2
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHH-H-HHHHHcCCCCcceEEEecCchHhh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKV-F-DKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~-~-~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
.+|+.|+.-++....-.-...+.|..+| +++.++...++.+-.+...+..+ . ..+.+...+..|.||-.||...-+
T Consensus 23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~ 100 (193)
T 1oi4_A 23 SKKIAVLITDEFEDSEFTSPADEFRKAG--HEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDY 100 (193)
T ss_dssp CCEEEEECCTTBCTHHHHHHHHHHHHTT--CEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCC--CEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHH
Confidence 4678887777665543344566777888 78765543333201110000000 0 000011112234888888754432
Q ss_pred ------HHHHHHHHhhcCCcEEEecccc
Q 017815 112 ------MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 112 ------~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+..++...+..+.|+..|++..
T Consensus 101 l~~~~~l~~~l~~~~~~gk~i~aIC~G~ 128 (193)
T 1oi4_A 101 LRGDNRFVTFTRDFVNSGKPVFAICHGP 128 (193)
T ss_dssp HTTSHHHHHHHHHHHHTTCCEEEETTTH
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 3345544567899999999984
No 252
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=30.83 E-value=1.4e+02 Score=24.80 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec
Q 017815 49 YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG 105 (365)
+..++.+.|++.| ++|.++.-......+....+.+-++.+.+.++| ++|.|=
T Consensus 34 ia~~l~~~L~~~G--~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aD---lfISIH 85 (180)
T 3qay_A 34 LAPVLADTFRKEG--HKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYD---LLIELH 85 (180)
T ss_dssp HHHHHHHHHHHTT--CEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCS---EEEEEE
T ss_pred HHHHHHHHHHhcC--CcceEEECCCCCccccccCHHHHHHHHHhcCCC---EEEEee
Confidence 7888999999999 775333222222112234677778888888888 999884
No 253
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=30.59 E-value=1.5e+02 Score=21.32 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=41.8
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+.+.|...| +.+. ... +. .++.+.+.+..+| +||. +.+..-++
T Consensus 3 ~~ilivdd~~~---~~~~l~~~L~~~~--~~v~--~~~------~~---~~~~~~~~~~~~d---lvi~d~~l~~~~g~~ 63 (122)
T 1zgz_A 3 HHIVIVEDEPV---TQARLQSYFTQEG--YTVS--VTA------SG---AGLREIMQNQSVD---LILLDINLPDENGLM 63 (122)
T ss_dssp CEEEEECSSHH---HHHHHHHHHHHTT--CEEE--EES------SH---HHHHHHHHHSCCS---EEEEESCCSSSCHHH
T ss_pred cEEEEEECCHH---HHHHHHHHHHHCC--CeEE--Eec------CH---HHHHHHHhcCCCC---EEEEeCCCCCCChHH
Confidence 46777777654 3445555666667 5542 222 22 3344455566666 6653 45666678
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+.. ...+|++.+
T Consensus 64 ~~~~l~~--~~~~~ii~~ 79 (122)
T 1zgz_A 64 LTRALRE--RSTVGIILV 79 (122)
T ss_dssp HHHHHHT--TCCCEEEEE
T ss_pred HHHHHHh--cCCCCEEEE
Confidence 8776632 345666655
No 254
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=30.59 E-value=88 Score=26.49 Aligned_cols=36 Identities=8% Similarity=-0.169 Sum_probs=26.3
Q ss_pred cceEEEecCchHh-------hHHHHHHHHhhcCCcEEEecccc
Q 017815 98 RCTFVALGGGVIG-------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 98 ~~~IIaiGGGsv~-------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
-|.||-.||-... ++..++...+..+.++.+|++..
T Consensus 90 ~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~ 132 (224)
T 1u9c_A 90 FDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGP 132 (224)
T ss_dssp CSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGG
T ss_pred CCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHH
Confidence 3588888885432 35566666677899999999985
No 255
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=30.57 E-value=1.8e+02 Score=26.43 Aligned_cols=85 Identities=14% Similarity=0.147 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+..
T Consensus 40 ~iD~~~l~~lv~~li~~G--v~Gl-~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~ 116 (314)
T 3qze_A 40 RLDWDSLAKLVDFHLQEG--TNAI-VAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKS 116 (314)
T ss_dssp CBCHHHHHHHHHHHHHHT--CCEE-EESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHH
Confidence 343345666666666677 5432 222 2355 3557777778888777754445559999999998888887766666
Q ss_pred cCCcEEEecc
Q 017815 122 RGVSFIQIPT 131 (365)
Q Consensus 122 ~g~p~i~IPT 131 (365)
.|..-+.+.+
T Consensus 117 ~Gadavlv~~ 126 (314)
T 3qze_A 117 GGADACLLVT 126 (314)
T ss_dssp TTCSEEEEEC
T ss_pred cCCCEEEEcC
Confidence 7877666543
No 256
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=30.28 E-value=1.7e+02 Score=26.27 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=56.2
Q ss_pred EccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHH
Q 017815 41 TNNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAA 118 (365)
Q Consensus 41 td~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~ 118 (365)
.|..+.....+++.+.+-++| ++- +++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..
T Consensus 14 ~dg~iD~~~l~~lv~~li~~G--v~g-i~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~ 90 (297)
T 2rfg_A 14 INGQVDEKALAGLVDWQIKHG--AHG-LVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQH 90 (297)
T ss_dssp ETTEECHHHHHHHHHHHHHTT--CSE-EECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcC--CCE-EEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHH
Confidence 355554445666667776778 543 1222 22453 457777778888777643344559999999888777666655
Q ss_pred HhhcCCcEEEeccc
Q 017815 119 SYLRGVSFIQIPTT 132 (365)
Q Consensus 119 ~~~~g~p~i~IPTT 132 (365)
+...|..-+.+.+-
T Consensus 91 A~~~Gadavlv~~P 104 (297)
T 2rfg_A 91 AQQAGADAVLCVAG 104 (297)
T ss_dssp HHHHTCSEEEECCC
T ss_pred HHhcCCCEEEEcCC
Confidence 55568877766443
No 257
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=30.19 E-value=1.2e+02 Score=22.56 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=43.4
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEE---ecCchH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVA---LGGGVI 109 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIa---iGGGsv 109 (365)
..+++||-|... ..+.+.+.|...| +++. .+. + ..++.+.+.+ ..+| +||. +.+..-
T Consensus 15 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~l~~~~~~d---lvilD~~l~~~~g 75 (138)
T 2b4a_A 15 PFRVTLVEDEPS---HATLIQYHLNQLG--AEVT--VHP------S---GSAFFQHRSQLSTCD---LLIVSDQLVDLSI 75 (138)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHTGGGGGSCS---EEEEETTCTTSCH
T ss_pred CCeEEEECCCHH---HHHHHHHHHHHcC--CEEE--EeC------C---HHHHHHHHHhCCCCC---EEEEeCCCCCCCH
Confidence 567777776654 3455566677667 5542 222 2 3344455555 5666 6653 355566
Q ss_pred hhHHHHHHHHhhcCCcEEEec
Q 017815 110 GDMCGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IP 130 (365)
+++.+.+.. ....+|++.+-
T Consensus 76 ~~~~~~l~~-~~~~~~ii~ls 95 (138)
T 2b4a_A 76 FSLLDIVKE-QTKQPSVLILT 95 (138)
T ss_dssp HHHHHHHTT-SSSCCEEEEEE
T ss_pred HHHHHHHHh-hCCCCCEEEEE
Confidence 677766532 23467777763
No 258
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=29.98 E-value=1.7e+02 Score=21.74 Aligned_cols=79 Identities=9% Similarity=-0.038 Sum_probs=46.1
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH-----cCCCCcceEEE---ecC
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-----SRLDRRCTFVA---LGG 106 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~-----~~~dr~~~IIa---iGG 106 (365)
.+++||-|... ..+.+...|...| +...+..+. +. .++.+.+.+ ..+| +||. +.+
T Consensus 10 ~~iLivdd~~~---~~~~l~~~l~~~~--~~~~v~~~~------~~---~~a~~~l~~~~~~~~~~d---lvi~D~~l~~ 72 (146)
T 3ilh_A 10 DSVLLIDDDDI---VNFLNTTIIRMTH--RVEEIQSVT------SG---NAAINKLNELYAAGRWPS---IICIDINMPG 72 (146)
T ss_dssp EEEEEECSCHH---HHHHHHHHHHTTC--CEEEEEEES------SH---HHHHHHHHHHHTSSCCCS---EEEEESSCSS
T ss_pred ceEEEEeCCHH---HHHHHHHHHHhcC--CCeeeeecC------CH---HHHHHHHHHhhccCCCCC---EEEEcCCCCC
Confidence 46777777654 3455666777777 421222332 33 334444555 5556 6654 567
Q ss_pred chHhhHHHHHHHH---hhcCCcEEEec
Q 017815 107 GVIGDMCGYAAAS---YLRGVSFIQIP 130 (365)
Q Consensus 107 Gsv~D~ak~vA~~---~~~g~p~i~IP 130 (365)
+.-+++.+.+... ....+|++.+-
T Consensus 73 ~~g~~~~~~l~~~~~~~~~~~~ii~~t 99 (146)
T 3ilh_A 73 INGWELIDLFKQHFQPMKNKSIVCLLS 99 (146)
T ss_dssp SCHHHHHHHHHHHCGGGTTTCEEEEEC
T ss_pred CCHHHHHHHHHHhhhhccCCCeEEEEe
Confidence 8888999887542 23567777663
No 259
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=29.89 E-value=1.8e+02 Score=21.97 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=53.0
Q ss_pred CceEEEEEccCchHH-HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 34 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 34 ~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
..|+++++..+.... +.+++++..++.| +++.....+.++- .+.. .++| ||=+|=-..--.
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~g--i~v~i~a~~~~~~-------~~~~-----~~~D----vvLLgPQV~y~~ 67 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTE--VRVIANSGAYGAH-------YDIM-----GVYD----LIILAPQVRSYY 67 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHT--CSEEEEEEETTSC-------TTTG-----GGCS----EEEECGGGGGGH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC--CceEEEEcchHHH-------Hhhc-----cCCC----EEEEChHHHHHH
Confidence 458999999886654 8899999999888 7765543333221 1111 2356 566777666555
Q ss_pred HHHHHHHhhcCCcEEEeccc
Q 017815 113 CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPTT 132 (365)
.++-..+-..|+|+..||..
T Consensus 68 ~~ik~~~~~~~ipV~vI~~~ 87 (108)
T 3nbm_A 68 REMKVDAERLGIQIVATRGM 87 (108)
T ss_dssp HHHHHHHTTTTCEEEECCHH
T ss_pred HHHHHHhhhcCCcEEEeCHH
Confidence 55544344568999999876
No 260
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=29.84 E-value=1.1e+02 Score=22.95 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=43.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH----------cCCCCcceEEE
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE----------SRLDRRCTFVA 103 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~----------~~~dr~~~IIa 103 (365)
..+++||.|... ..+.+.+.|...| +...+..+. + ..++.+.+.+ ..+| +||.
T Consensus 6 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~~~v~~~~------~---~~~al~~l~~~~~~~~~~~~~~~d---lvi~ 68 (149)
T 1k66_A 6 TQPLLVVEDSDE---DFSTFQRLLQREG--VVNPIYRCI------T---GDQALDFLYQTGSYCNPDIAPRPA---VILL 68 (149)
T ss_dssp TSCEEEECCCHH---HHHHHHHHHHHTT--BCSCEEEEC------S---HHHHHHHHHTCCSSSCGGGCCCCS---EEEE
T ss_pred CccEEEEECCHH---HHHHHHHHHHHcC--CCceEEEEC------C---HHHHHHHHHhcccccCcccCCCCc---EEEE
Confidence 457888877654 3455666677777 411122222 2 3444455554 4455 6653
Q ss_pred ---ecCchHhhHHHHHHHHh-hcCCcEEEe
Q 017815 104 ---LGGGVIGDMCGYAAASY-LRGVSFIQI 129 (365)
Q Consensus 104 ---iGGGsv~D~ak~vA~~~-~~g~p~i~I 129 (365)
+.+..-.++.+.+.... ...+|+|.+
T Consensus 69 D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 98 (149)
T 1k66_A 69 DLNLPGTDGREVLQEIKQDEVLKKIPVVIM 98 (149)
T ss_dssp CSCCSSSCHHHHHHHHTTSTTGGGSCEEEE
T ss_pred ECCCCCCCHHHHHHHHHhCcccCCCeEEEE
Confidence 45666677777663211 145677766
No 261
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=29.67 E-value=2.7e+02 Score=25.11 Aligned_cols=84 Identities=10% Similarity=-0.000 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCCC-CCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e~-~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++-. ++. ..||. .=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+..
T Consensus 24 ~iD~~~l~~lv~~li~~G--v~Gl-~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~ 100 (311)
T 3h5d_A 24 SINFDAIPALIEHLLAHH--TDGI-LLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAE 100 (311)
T ss_dssp SBCTTHHHHHHHHHHHTT--CCCE-EESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHh
Confidence 343335566666666777 5432 222 33553 567788888999888876566669999999999888877765555
Q ss_pred cCC-cEEEec
Q 017815 122 RGV-SFIQIP 130 (365)
Q Consensus 122 ~g~-p~i~IP 130 (365)
.|. .-+.+.
T Consensus 101 ~Ga~davlv~ 110 (311)
T 3h5d_A 101 FGGFAAGLAI 110 (311)
T ss_dssp SCCCSEEEEE
T ss_pred cCCCcEEEEc
Confidence 564 655543
No 262
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=29.64 E-value=1.4e+02 Score=24.30 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=50.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHH-----H----HHHHHHHHHHcCCCCcceEEEe
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMD-----T----LMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~-----~----v~~~~~~~~~~~~dr~~~IIai 104 (365)
.+|+.|+.-++....-.-...+.|..+| +++.++... +.+-.+.. . ... .+.+...+.-|.||-.
T Consensus 9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~-~~~v~~~~~~~~~g~~v~~~~---~~~~~~~~~~D~livp 82 (190)
T 2vrn_A 9 GKKIAILAADGVEEIELTSPRAAIEAAG--GTTELISLE-PGEIQSMKGDIEPQEKYRVDH---VVSEVQVSDYDGLLLP 82 (190)
T ss_dssp TCEEEEECCTTCBHHHHHHHHHHHHHTT--CEEEEEESS-SSEEEEEETTTEEEEEEECSE---EGGGCCGGGCSEEEEC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHCC--CEEEEEecC-CCccccccccccCCcEEeCCC---ChhhCChhhCCEEEEC
Confidence 4678888777766543334456677777 777654332 22111100 0 000 0011111223488888
Q ss_pred cCc-hHhh------HHHHHHHHhhcCCcEEEecccc
Q 017815 105 GGG-VIGD------MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 105 GGG-sv~D------~ak~vA~~~~~g~p~i~IPTTl 133 (365)
||- ..-+ +..++...+..+.++..|+|..
T Consensus 83 GG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~ 118 (190)
T 2vrn_A 83 GGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP 118 (190)
T ss_dssp CCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTT
T ss_pred CCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhH
Confidence 884 4333 4456655677899999999884
No 263
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=29.55 E-value=98 Score=22.90 Aligned_cols=75 Identities=8% Similarity=0.156 Sum_probs=43.1
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhhH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGDM 112 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D~ 112 (365)
|++||.|... ..+.+.+.|.+.| +.+. ..+.+++ ++.+.+.+..+| +||. +.+...+++
T Consensus 3 ~ilivdd~~~---~~~~l~~~L~~~g--~~v~-~~~~~~~---------~a~~~~~~~~~d---lii~d~~l~~~~g~~~ 64 (134)
T 3f6c_A 3 NAIIIDDHPL---AIAAIRNLLIKND--IEIL-AELTEGG---------SAVQRVETLKPD---IVIIDVDIPGVNGIQV 64 (134)
T ss_dssp EEEEECCCHH---HHHHHHHHHHHTT--EEEE-EEESSST---------THHHHHHHHCCS---EEEEETTCSSSCHHHH
T ss_pred EEEEEcCCHH---HHHHHHHHHhhCC--cEEE-EEcCCHH---------HHHHHHHhcCCC---EEEEecCCCCCChHHH
Confidence 5777777654 3455666677777 5542 1334332 233444556677 6664 467777888
Q ss_pred HHHHHHHhhcCCcEEEe
Q 017815 113 CGYAAASYLRGVSFIQI 129 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~I 129 (365)
.+.+... ...+|++.+
T Consensus 65 ~~~l~~~-~~~~~ii~~ 80 (134)
T 3f6c_A 65 LETLRKR-QYSGIIIIV 80 (134)
T ss_dssp HHHHHHT-TCCSEEEEE
T ss_pred HHHHHhc-CCCCeEEEE
Confidence 8776432 345666655
No 264
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=29.48 E-value=1.9e+02 Score=26.32 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=56.5
Q ss_pred CchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhh
Q 017815 44 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 121 (365)
Q Consensus 44 ~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~ 121 (365)
.+.....+++.+.+-++| ++- +++. ..|| +.=|.++-.++++.+.+.-..|--+|+++|+-++-|+...+..+..
T Consensus 28 ~iD~~~l~~lv~~li~~G--v~g-l~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~ 104 (318)
T 3qfe_A 28 TLDLASQERYYAYLARSG--LTG-LVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASV 104 (318)
T ss_dssp EECHHHHHHHHHHHHTTT--CSE-EEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC--CCE-EEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 344345666777777778 553 2222 2355 3457777788888887754445559999999999888877766666
Q ss_pred cCCcEEEecc
Q 017815 122 RGVSFIQIPT 131 (365)
Q Consensus 122 ~g~p~i~IPT 131 (365)
.|..-+.+.+
T Consensus 105 ~Gadavlv~~ 114 (318)
T 3qfe_A 105 AGANYVLVLP 114 (318)
T ss_dssp HTCSEEEECC
T ss_pred cCCCEEEEeC
Confidence 7877666633
No 265
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=29.41 E-value=1.2e+02 Score=28.61 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
.++++++.+.+..-+.+|+++|||+.+= ++++.. .....++++.|...
T Consensus 240 ~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k-~~~p~vrvigVe~~ 288 (389)
T 1wkv_A 240 REIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQ-SVDPSIRAVLVQPA 288 (389)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHH-HHCTTCEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHH-HhCCCCeEEEEecC
Confidence 4667777654333356899999988643 222221 11345677777654
No 266
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=29.38 E-value=1e+02 Score=31.83 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=56.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHH----HHHHHHHHHHcCCCCcceEEEecCchH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDT----LMKVFDKAIESRLDRRCTFVALGGGVI 109 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~----v~~~~~~~~~~~~dr~~~IIaiGGGsv 109 (365)
++|+.|+...++...-...+.+.|+++| ++|.++....++ ..+-.. ++..++.+....+| .||-.|||..
T Consensus 600 grKVaILlaDGfEe~El~~pvdaLr~AG--~~V~vVS~~~g~-V~gs~G~~V~aD~t~~~v~s~~fD---ALVVPGGg~~ 673 (753)
T 3ttv_A 600 GRVVAILLNDEVRSADLLAILKALKAKG--VHAKLLYSRMGE-VTADDGTVLPIAATFAGAPSLTVD---AVIVPCGNIA 673 (753)
T ss_dssp TCEEEEECCTTCCHHHHHHHHHHHHHHT--CEEEEEESSSSE-EECTTSCEEECCEETTTSCGGGCS---EEEECCSCGG
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHCC--CEEEEEEcCCCe-EEeCCCCEEecccchhhCCCcCCC---EEEECCCChH
Confidence 6889888888887776677788898888 777654333221 111000 00111111112234 8888888532
Q ss_pred -----hhHHHHHHHHhhcCCcEEEecccc
Q 017815 110 -----GDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 110 -----~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
-++..++...+..+.++.+|++..
T Consensus 674 ~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp 702 (753)
T 3ttv_A 674 DIADNGDANYYLMEAYKHLKPIALAGDAR 702 (753)
T ss_dssp GTTTCHHHHHHHHHHHHTTCCEEEEGGGG
T ss_pred HhhhCHHHHHHHHHHHhcCCeEEEECchH
Confidence 245566666778899999998874
No 267
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=29.31 E-value=2.1e+02 Score=24.63 Aligned_cols=85 Identities=7% Similarity=-0.098 Sum_probs=49.0
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHH---HHHHHHHcCCCCcceEEEecCch
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK---VFDKAIESRLDRRCTFVALGGGV 108 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~---~~~~~~~~~~dr~~~IIaiGGGs 108 (365)
+++-++.... .+..+.+-+.+.+++.| +++.+ +.. ..++ +.-.+ .++.+.+.++| .||..+...
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~--~~~-~~~~--~~~~~~~~~~~~l~~~~vd---giIi~~~~~ 78 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVH--RHVVV--ATG-CGES--TPREQALEAVRFLIGRDCD---GVVVISHDL 78 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTT--CEEEE--ECC-CSSS--CHHHHHHHHHHHHHHTTCS---EEEECCSSS
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEE--EeC-CCch--hhhhhHHHHHHHHHhcCcc---EEEEecCCC
Confidence 4455554322 23346667777788888 66532 332 2222 23334 66777778888 888877554
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.-+..+.+ ...++|+|.+-..
T Consensus 79 ~~~~~~~l---~~~~iPvV~~~~~ 99 (290)
T 2rgy_A 79 HDEDLDEL---HRMHPKMVFLNRA 99 (290)
T ss_dssp CHHHHHHH---HHHCSSEEEESSC
T ss_pred CHHHHHHH---hhcCCCEEEEccc
Confidence 32333322 2369999998665
No 268
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=29.25 E-value=3.1e+02 Score=24.45 Aligned_cols=129 Identities=12% Similarity=0.039 Sum_probs=73.2
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.+.+.-.. +|+++|+-++-|+...+..+.
T Consensus 15 g~iD~~~l~~lv~~li~~G--v~gl-~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g---viaGvg~~~t~~ai~la~~A~ 88 (293)
T 1w3i_A 15 NRIDKEKLKIHAENLIRKG--IDKL-FVNGTTGLGPSLSPEEKLENLKAVYDVTNK---IIFQVGGLNLDDAIRLAKLSK 88 (293)
T ss_dssp SSBCHHHHHHHHHHHHHTT--CCEE-EESSTTTTGGGSCHHHHHHHHHHHHTTCSC---EEEECCCSCHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEE-EECccccChhhCCHHHHHHHHHHHHHHcCC---EEEecCCCCHHHHHHHHHHHH
Confidence 3444445666666676778 5532 222 2356 356778888899888875333 999999999888887776666
Q ss_pred hcCCcEEEeccccccccccccCCceEEecCCCcceeeccCCccEEEEehhhhC-CCCHHHHHh
Q 017815 121 LRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLN-TLPDRELAS 182 (365)
Q Consensus 121 ~~g~p~i~IPTTl~A~~~s~~~~~~~i~~~~~k~~~~~~~~P~~viiD~~l~~-tlP~~~~~s 182 (365)
..|..-+.+.+-.-.. ..+....+. ..+......-.|-.++--|..+- ++++..++.
T Consensus 89 ~~Gadavlv~~P~y~~---~~s~~~l~~--~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 146 (293)
T 1w3i_A 89 DFDIVGIASYAPYYYP---RMSEKHLVK--YFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE 146 (293)
T ss_dssp GSCCSEEEEECCCSCS---SCCHHHHHH--HHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred hcCCCEEEEcCCCCCC---CCCHHHHHH--HHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh
Confidence 6788777664431000 001110100 00111111135777776776664 466666544
No 269
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=29.19 E-value=2.4e+02 Score=23.34 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=39.4
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCCCC-ceEEEEEeCCCCCCCCHHHHHHHHHHHH------HcCCCCcceEEE
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAI------ESRLDRRCTFVA 103 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g~~-i~v~~~~~~~~e~~~~~~~v~~~~~~~~------~~~~dr~~~IIa 103 (365)
+-|+.||..+.-.. .+.+--.+.|.+.|.. -++.++.+|+. +| +--.++.+. ..++| .||+
T Consensus 16 ~~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGa-----fE-iP~aak~la~~~~~~~~~yD---avIa 86 (168)
T 1ejb_A 16 KIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGS-----YE-LPWGTKRFVDRQAKLGKPLD---VVIP 86 (168)
T ss_dssp TCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSG-----GG-HHHHHHHHHHHHHHTTCCCS---EEEE
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH-----HH-HHHHHHHHHhhccccCCCcC---EEEE
Confidence 45788888875433 3566666778887731 13455666753 22 222223333 24566 9999
Q ss_pred ec----CchHhh
Q 017815 104 LG----GGVIGD 111 (365)
Q Consensus 104 iG----GGsv~D 111 (365)
+| |++..+
T Consensus 87 LG~VIrG~T~Hf 98 (168)
T 1ejb_A 87 IGVLIKGSTMHF 98 (168)
T ss_dssp EEEEECCSSSHH
T ss_pred ecccccCCchHH
Confidence 99 555443
No 270
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=29.08 E-value=3.1e+02 Score=24.46 Aligned_cols=84 Identities=5% Similarity=0.093 Sum_probs=49.8
Q ss_pred eEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhH
Q 017815 36 KVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 112 (365)
Q Consensus 36 ~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ 112 (365)
++-++.... .+..+.+.+.+.+.+.| +++.++ .. . .+.+.-.+.++.+...++| .||-.+....-+.
T Consensus 68 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~-~--~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~~ 137 (348)
T 3bil_A 68 TIGVIVPSLINHYFAAMVTEIQSTASKAG--LATIIT--NS-N--EDATTMSGSLEFLTSHGVD---GIICVPNEECANQ 137 (348)
T ss_dssp CEEEEESCSSSHHHHHHHHHHHHHHHHTT--CCEEEE--EC-T--TCHHHHHHHHHHHHHTTCS---CEEECCCGGGHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHcC--CEEEEE--eC-C--CCHHHHHHHHHHHHhCCCC---EEEEeCCCCChHH
Confidence 455554321 23336667777788888 665432 22 1 2445566777888888888 8887775433222
Q ss_pred HHHHHHHhhcCCcEEEeccc
Q 017815 113 CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IPTT 132 (365)
.+. ....++|+|.+-..
T Consensus 138 ~~~---l~~~~iPvV~i~~~ 154 (348)
T 3bil_A 138 LED---LQKQGMPVVLVDRE 154 (348)
T ss_dssp HHH---HHHC-CCEEEESSC
T ss_pred HHH---HHhCCCCEEEEccc
Confidence 222 23479999998665
No 271
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=29.07 E-value=1.6e+02 Score=27.36 Aligned_cols=94 Identities=7% Similarity=0.065 Sum_probs=53.6
Q ss_pred chhhhhccCCceEEEEEccCc-hHH---HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 25 NCLYYRHVQGKKVLVVTNNTV-APL---YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~-~~~---~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
.++++.++ -+++.+|++... ... ..+.+.+.+++.| +.+....+... ...+ +...+..++ .+++ +
T Consensus 146 ~~~~~~~~-w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g--~~v~~~~~~~~-~~~d---~~~~l~~i~-~~~~---v 214 (441)
T 1jdp_A 146 LALFRHHH-WSRAALVYSDDKLERNCYFTLEGVHEVFQEEG--LHTSIYSFDET-KDLD---LEDIVRNIQ-ASER---V 214 (441)
T ss_dssp HHHHHHHT-CCEEEEEEECCSSSCHHHHHHHHHHHHHHHHT--CEEEEEEECTT-SCCC---HHHHHHHHH-HHCS---E
T ss_pred HHHHHhcC-CcEEEEEEEcCCcccchHHHHHHHHHHHHhcC--cEEEEEEecCC-cccC---HHHHHHHhh-cCCc---E
Confidence 45566554 478877776543 333 6777888888888 66543333221 1123 456666666 6666 8
Q ss_pred EEEecCchHhhHHHHHHHHhhcC---CcEEEecc
Q 017815 101 FVALGGGVIGDMCGYAAASYLRG---VSFIQIPT 131 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g---~p~i~IPT 131 (365)
||..|.+. |+..++..+...| ..++-|-+
T Consensus 215 ii~~~~~~--~~~~~~~~~~~~gl~~~~~v~i~~ 246 (441)
T 1jdp_A 215 VIMCASSD--TIRSIMLVAHRHGMTSGDYAFFNI 246 (441)
T ss_dssp EEEESCHH--HHHHHHHHHHHTTCTTTTCEEEEE
T ss_pred EEEecCHH--HHHHHHHHHHHcCCCCCCEEEEEE
Confidence 88877653 5555554444333 34554433
No 272
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=29.06 E-value=2.7e+02 Score=23.83 Aligned_cols=86 Identities=6% Similarity=-0.056 Sum_probs=51.4
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH--
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI-- 109 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv-- 109 (365)
+++-++.... .+..+.+-+.+.+++.| +++.++. .+. ..+.+.-.+.++.+...++| .||-.+....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g--~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~vd---giii~~~~~~~~ 77 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQG--VNLRVLE-AGG--YPNKSRQEQQLALCTQWGAN---AIILGTVDPHAY 77 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHT--CEEEEEE-CSS--TTCHHHHHHHHHHHHHHTCS---EEEECCSSTTSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcC--CeEEEEc-CCC--CCCHHHHHHHHHHHHHcCCC---EEEEeCCChhHH
Confidence 4555554432 23345666777788888 6654332 222 12556667778888888888 8887765443
Q ss_pred hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.+..+. .. .|+|+|.+=..
T Consensus 78 ~~~~~~---~~-~~iPvV~~~~~ 96 (304)
T 3o1i_D 78 EHNLKS---WV-GNTPVFATVNQ 96 (304)
T ss_dssp TTTHHH---HT-TTSCEEECSSC
T ss_pred HHHHHH---Hc-CCCCEEEecCC
Confidence 333332 34 79999998443
No 273
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=28.96 E-value=1.7e+02 Score=21.41 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=45.3
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|.... .+.+...|. .| +++. .+. +..++.+.+.+..+| +||. +.+..-.+
T Consensus 5 ~~ilivdd~~~~---~~~l~~~l~-~~--~~v~--~~~---------~~~~a~~~l~~~~~d---lvi~d~~l~~~~g~~ 64 (133)
T 3nhm_A 5 PKVLIVENSWTM---RETLRLLLS-GE--FDCT--TAA---------DGASGLQQALAHPPD---VLISDVNMDGMDGYA 64 (133)
T ss_dssp CEEEEECSCHHH---HHHHHHHHT-TT--SEEE--EES---------SHHHHHHHHHHSCCS---EEEECSSCSSSCHHH
T ss_pred CEEEEEcCCHHH---HHHHHHHHh-CC--cEEE--EEC---------CHHHHHHHHhcCCCC---EEEEeCCCCCCCHHH
Confidence 577877776543 344555566 55 5543 222 234445566677777 6664 46777788
Q ss_pred HHHHHHHHh-hcCCcEEEec
Q 017815 112 MCGYAAASY-LRGVSFIQIP 130 (365)
Q Consensus 112 ~ak~vA~~~-~~g~p~i~IP 130 (365)
+.+.+.... ...+|++.+-
T Consensus 65 ~~~~l~~~~~~~~~pii~~s 84 (133)
T 3nhm_A 65 LCGHFRSEPTLKHIPVIFVS 84 (133)
T ss_dssp HHHHHHHSTTTTTCCEEEEE
T ss_pred HHHHHHhCCccCCCCEEEEe
Confidence 887764321 2467888773
No 274
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=28.71 E-value=2.8e+02 Score=26.62 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=48.3
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCC--CC------HHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 33 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENY--KN------MDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 33 ~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~--~~------~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
.+||++|..|+.. .-.+.+.|.+.| .++.........+. +. .++..++-+.+++.++| ++||
T Consensus 312 ~Gkrv~i~~~~~~----~~~l~~~L~elG--m~vv~~~~~~~~~~~~~~~~~~v~~~D~~~le~~i~~~~pD---llig- 381 (458)
T 3pdi_B 312 SSARTAIAADPDL----LLGFDALLRSMG--AHTVAAVVPARAAALVDSPLPSVRVGDLEDLEHAARAGQAQ---LVIG- 381 (458)
T ss_dssp TTCEEEEECCHHH----HHHHHHHHHTTT--CEEEEEEESSCCSCCTTTTSSCEEESHHHHHHHHHHHHTCS---EEEE-
T ss_pred CCCEEEEECCcHH----HHHHHHHHHHCC--CEEEEEEECCCChhhhhCccCcEEeCCHHHHHHHHHhcCCC---EEEE-
Confidence 5899999888642 223455667888 77654444332110 00 13455666677788888 7774
Q ss_pred cCchHhhHHHHHHHHhhcCCcEEEe
Q 017815 105 GGGVIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 105 GGGsv~D~ak~vA~~~~~g~p~i~I 129 (365)
+.. .|++| ...|+|++.+
T Consensus 382 -~~~----~~~~a--~k~gip~~~~ 399 (458)
T 3pdi_B 382 -NSH----ALASA--RRLGVPLLRA 399 (458)
T ss_dssp -CTT----HHHHH--HHTTCCEEEC
T ss_pred -Chh----HHHHH--HHcCCCEEEe
Confidence 333 46663 4679999876
No 275
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=28.68 E-value=2.3e+02 Score=24.46 Aligned_cols=78 Identities=8% Similarity=0.039 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+.+-+.+.+++.| +++.+ +. .+...+.+.-.+.++.+...++| .||-.+.... .....+......|+|+
T Consensus 19 ~~~~~gi~~~a~~~g--~~~~~--~~-~~~~~~~~~~~~~i~~l~~~~vd---giii~~~~~~-~~~~~~~~~~~~giPv 89 (297)
T 3rot_A 19 TSLFQGAKKAAEELK--VDLQI--LA-PPGANDVPKQVQFIESALATYPS---GIATTIPSDT-AFSKSLQRANKLNIPV 89 (297)
T ss_dssp HHHHHHHHHHHHHHT--CEEEE--EC-CSSSCCHHHHHHHHHHHHHTCCS---EEEECCCCSS-TTHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHhC--cEEEE--EC-CCCcCCHHHHHHHHHHHHHcCCC---EEEEeCCCHH-HHHHHHHHHHHCCCCE
Confidence 346666777788888 66543 32 21112556667788888888888 7776554322 1112222233569999
Q ss_pred EEecccc
Q 017815 127 IQIPTTV 133 (365)
Q Consensus 127 i~IPTTl 133 (365)
|.+-+..
T Consensus 90 V~~~~~~ 96 (297)
T 3rot_A 90 IAVDTRP 96 (297)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 9997663
No 276
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=28.60 E-value=1.8e+02 Score=21.64 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=43.1
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+...|...| +++. .+. + ..+..+.+.+..+| +||- +.+..-++
T Consensus 5 ~~Ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~~~~~~~d---lvllD~~l~~~~g~~ 65 (136)
T 2qzj_A 5 TKILIIDGDKD---NCQKLKGFLEEKG--ISID--LAY------N---CEEAIGKIFSNKYD---LIFLEIILSDGDGWT 65 (136)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHTTT--CEEE--EES------S---HHHHHHHHHHCCCS---EEEEESEETTEEHHH
T ss_pred CeEEEEcCCHH---HHHHHHHHHHHCC--CEEE--EEC------C---HHHHHHHHHhcCCC---EEEEeCCCCCCCHHH
Confidence 47777777654 3455666677767 5542 233 2 33444555666666 6653 56666778
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+... ..+|++.+
T Consensus 66 l~~~l~~~--~~~~ii~l 81 (136)
T 2qzj_A 66 LCKKIRNV--TTCPIVYM 81 (136)
T ss_dssp HHHHHHTT--CCCCEEEE
T ss_pred HHHHHccC--CCCCEEEE
Confidence 88776421 25666655
No 277
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=28.56 E-value=2.2e+02 Score=25.49 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=54.9
Q ss_pred cCchHHHHHHHHHHHhh-CCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 43 NTVAPLYLDKVTDALTR-GNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~-~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
..+.....+++.+.+-+ +| ++-. ++. ..|| +.=|.++-.++++.+.+.--.|--+|+++|+-++-|+...+..+
T Consensus 19 g~iD~~~l~~lv~~li~~~G--v~gl-~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a 95 (293)
T 1f6k_A 19 GTINEKGLRQIIRHNIDKMK--VDGL-YVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYA 95 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTSC--CSEE-EESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhhCC--CcEE-EeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 34444456666666666 78 5532 222 2355 35677777788888776433455599999998887777666555
Q ss_pred hhcCCcEEEeccc
Q 017815 120 YLRGVSFIQIPTT 132 (365)
Q Consensus 120 ~~~g~p~i~IPTT 132 (365)
...|..-+.+.+-
T Consensus 96 ~~~Gadavlv~~P 108 (293)
T 1f6k_A 96 TELGYDCLSAVTP 108 (293)
T ss_dssp HHHTCSEEEEECC
T ss_pred HhcCCCEEEECCC
Confidence 5568776665433
No 278
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.52 E-value=1.2e+02 Score=26.05 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=45.0
Q ss_pred ceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++... ..+..+.+.+.+.+.+.| +++.++ ....+. .-.+.++.+.+.++| .|| ++....-+
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~~~~~----~~~~~~~~l~~~~vd---giI-~~~~~~~~ 73 (280)
T 3gyb_A 6 QLIAVLIDDYSNPWFIDLIQSLSDVLTPKG--YRLSVI--DSLTSQ----AGTDPITSALSMRPD---GII-IAQDIPDF 73 (280)
T ss_dssp CEEEEEESCTTSGGGHHHHHHHHHHHGGGT--CEEEEE--CSSSSC----SSSCHHHHHHTTCCS---EEE-EESCC---
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHCC--CEEEEE--eCCCch----HHHHHHHHHHhCCCC---EEE-ecCCCChh
Confidence 455555532 234457778888888888 665433 222222 223445556677888 999 87655433
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
. +. . .++|+|.+-..
T Consensus 74 ~---~~--~-~~iPvV~~~~~ 88 (280)
T 3gyb_A 74 T---VP--D-SLPPFVIAGTR 88 (280)
T ss_dssp -----------CCCEEEESCC
T ss_pred h---Hh--h-cCCCEEEECCC
Confidence 2 22 1 79999998665
No 279
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=28.43 E-value=2.3e+02 Score=26.13 Aligned_cols=88 Identities=11% Similarity=-0.014 Sum_probs=49.2
Q ss_pred ceEEEEEccCchH-HH----HHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH
Q 017815 35 KKVLVVTNNTVAP-LY----LDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI 109 (365)
Q Consensus 35 ~~~livtd~~~~~-~~----~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv 109 (365)
.++-+|+...+.+ .| .+-+.+..++.| -++....+.... +.+...+.++.+.+.++| +||+.|.+-
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--~~~~~~~~e~~~---~~~d~~~~l~~l~~~g~d---~Ii~~g~~~- 97 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALG--DKVETTFLENVA---EGADAERSIKRIARAGNK---LIFTTSFGY- 97 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--TTEEEEEECSCC---TTHHHHHHHHHHHHTTCS---EEEECSGGG-
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--CceEEEEEecCC---CHHHHHHHHHHHHHCCCC---EEEECCHHH-
Confidence 4677777543433 23 333333334433 124433343322 234567788888888998 999987554
Q ss_pred hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.|...-+|.. ..++|++.+-..
T Consensus 98 ~~~~~~vA~~-~Pdv~fv~id~~ 119 (356)
T 3s99_A 98 MDPTVKVAKK-FPDVKFEHATGY 119 (356)
T ss_dssp HHHHHHHHTT-CTTSEEEEESCC
T ss_pred HHHHHHHHHH-CCCCEEEEEecc
Confidence 4544444332 357899988543
No 280
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=28.40 E-value=1.8e+02 Score=21.42 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=43.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
.++++||.|... ..+.+...|...| +.+. .+. +. .+..+.+.+..+| +||. +.+..-+
T Consensus 3 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~~---~~a~~~~~~~~~d---lvl~D~~l~~~~g~ 63 (136)
T 1mvo_A 3 NKKILVVDDEES---IVTLLQYNLERSG--YDVI--TAS------DG---EEALKKAETEKPD---LIVLDVMLPKLDGI 63 (136)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------SH---HHHHHHHHHHCCS---EEEEESSCSSSCHH
T ss_pred CCEEEEEECCHH---HHHHHHHHHHHCC--cEEE--Eec------CH---HHHHHHHhhcCCC---EEEEecCCCCCCHH
Confidence 367888877754 3455566676677 5542 232 22 3334445556666 6653 3556667
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++++.+... ...+|++.+
T Consensus 64 ~~~~~l~~~-~~~~~ii~~ 81 (136)
T 1mvo_A 64 EVCKQLRQQ-KLMFPILML 81 (136)
T ss_dssp HHHHHHHHT-TCCCCEEEE
T ss_pred HHHHHHHcC-CCCCCEEEE
Confidence 887766432 245677665
No 281
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=28.31 E-value=1.8e+02 Score=25.38 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=26.8
Q ss_pred cceEEEecCchHh-------hHHHHHHHHhhcCCcEEEecccc
Q 017815 98 RCTFVALGGGVIG-------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 98 ~~~IIaiGGGsv~-------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
-|.|+-.||-..+ ++.+++...+..+.++.+|++..
T Consensus 99 yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~ 141 (244)
T 3kkl_A 99 YKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGP 141 (244)
T ss_dssp CSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG
T ss_pred CCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 4688888885442 35566666678899999999885
No 282
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=28.11 E-value=3.2e+02 Score=24.31 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=55.2
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHh
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY 120 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~ 120 (365)
..+.....+++.+.+-++| ++- +++. ..|| +.=|.++-.++++.+.+.-.. +|+++|+-++-|+...+..+.
T Consensus 15 g~iD~~~l~~lv~~li~~G--v~g-l~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g---ViaGvg~~~t~~ai~la~~A~ 88 (288)
T 2nuw_A 15 GKVNVDALKTHAKNLLEKG--IDA-IFVNGTTGLGPALSKDEKRQNLNALYDVTHK---LIFQVGSLNLNDVMELVKFSN 88 (288)
T ss_dssp SCBCHHHHHHHHHHHHHTT--CCE-EEETSTTTTGGGSCHHHHHHHHHHHTTTCSC---EEEECCCSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcC--CCE-EEECccccChhhCCHHHHHHHHHHHHHHhCC---eEEeeCCCCHHHHHHHHHHHH
Confidence 3444445666666666777 543 2222 2356 356778888888888765333 999999988888777666556
Q ss_pred hcCCcEEEeccc
Q 017815 121 LRGVSFIQIPTT 132 (365)
Q Consensus 121 ~~g~p~i~IPTT 132 (365)
..|..-+.+.+-
T Consensus 89 ~~Gadavlv~~P 100 (288)
T 2nuw_A 89 EMDILGVSSHSP 100 (288)
T ss_dssp TSCCSEEEECCC
T ss_pred hcCCCEEEEcCC
Confidence 678877776443
No 283
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=28.06 E-value=2.8e+02 Score=23.91 Aligned_cols=73 Identities=7% Similarity=0.026 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+.+.+.+.+.| +.+.++...+ . +...++.+.+...++| .||-.+....-+..+. ....++|
T Consensus 25 ~~~~~~gi~~~a~~~g--~~~~~~~~~~--~----~~~~~~~~~l~~~~vd---GiIi~~~~~~~~~~~~---l~~~~iP 90 (294)
T 3qk7_A 25 FLEMISWIGIELGKRG--LDLLLIPDEP--G----EKYQSLIHLVETRRVD---ALIVAHTQPEDFRLQY---LQKQNFP 90 (294)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEEECT--T----CCCHHHHHHHHHTCCS---EEEECSCCSSCHHHHH---HHHTTCC
T ss_pred HHHHHHHHHHHHHHCC--CEEEEEeCCC--h----hhHHHHHHHHHcCCCC---EEEEeCCCCChHHHHH---HHhCCCC
Confidence 3346777778888888 7765443322 2 1224455666777888 8888876543333332 3356999
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
+|.+-..
T Consensus 91 vV~~~~~ 97 (294)
T 3qk7_A 91 FLALGRS 97 (294)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9998665
No 284
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=27.94 E-value=45 Score=25.25 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=43.4
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecC--chH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGG--GVI 109 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGG--Gsv 109 (365)
.+++||.|... ..+.+.+.|.+.| +++. .+. + ..++.+.+.+..+| +||. +.+ ..-
T Consensus 7 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---lvi~D~~l~~~~~~g 67 (136)
T 3kto_A 7 PIIYLVDHQKD---ARAALSKLLSPLD--VTIQ--CFA------S---AESFMRQQISDDAI---GMIIEAHLEDKKDSG 67 (136)
T ss_dssp CEEEEECSCHH---HHHHHHHHHTTSS--SEEE--EES------S---HHHHTTSCCCTTEE---EEEEETTGGGBTTHH
T ss_pred CeEEEEcCCHH---HHHHHHHHHHHCC--cEEE--EeC------C---HHHHHHHHhccCCC---EEEEeCcCCCCCccH
Confidence 57888877654 3455666777777 6543 333 2 23344444444444 6654 345 667
Q ss_pred hhHHHHHHHHhhcCCcEEEe
Q 017815 110 GDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~I 129 (365)
.++.+.+... ...+|++.+
T Consensus 68 ~~~~~~l~~~-~~~~~ii~~ 86 (136)
T 3kto_A 68 IELLETLVKR-GFHLPTIVM 86 (136)
T ss_dssp HHHHHHHHHT-TCCCCEEEE
T ss_pred HHHHHHHHhC-CCCCCEEEE
Confidence 7777776433 256777766
No 285
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=27.93 E-value=3.2e+02 Score=24.22 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=56.7
Q ss_pred ccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 42 NNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 42 d~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
|..+.....+++.+.+-++| ++- +++. ..|| +.=|.++-.++++.+.+.-.. +|+++|+-++-|+...+..+
T Consensus 13 dg~iD~~~l~~lv~~li~~G--v~g-l~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g---vi~Gvg~~~t~~ai~la~~A 86 (286)
T 2r91_A 13 GGRLDPELFANHVKNITSKG--VDV-VFVAGTTGLGPALSLQEKMELTDAATSAARR---VIVQVASLNADEAIALAKYA 86 (286)
T ss_dssp TTEECHHHHHHHHHHHHHTT--CCE-EEETSTTTTGGGSCHHHHHHHHHHHHHHCSS---EEEECCCSSHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHCC--CCE-EEECccccChhhCCHHHHHHHHHHHHHHhCC---EEEeeCCCCHHHHHHHHHHH
Confidence 44454445666666666777 543 2222 2356 356778888899988876433 99999998888877766555
Q ss_pred hhcCCcEEEeccc
Q 017815 120 YLRGVSFIQIPTT 132 (365)
Q Consensus 120 ~~~g~p~i~IPTT 132 (365)
...|..-+.+.+-
T Consensus 87 ~~~Gadavlv~~P 99 (286)
T 2r91_A 87 ESRGAEAVASLPP 99 (286)
T ss_dssp HHTTCSEEEECCS
T ss_pred HhcCCCEEEEcCC
Confidence 5678887776544
No 286
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=27.48 E-value=2.8e+02 Score=23.33 Aligned_cols=74 Identities=9% Similarity=-0.001 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch-HhhHHHHHHHHhhcCC
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IGDMCGYAAASYLRGV 124 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs-v~D~ak~vA~~~~~g~ 124 (365)
+..+.+.+.+.+++.| +++.++ .. . .+.+.-.+.++.+...++| .||-.+... .-+..+. ....++
T Consensus 17 ~~~~~~gi~~~a~~~g--~~~~~~--~~-~--~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~~~~~~---~~~~~i 83 (272)
T 3o74_A 17 YARIAKQLEQGARARG--YQLLIA--SS-D--DQPDSERQLQQLFRARRCD---ALFVASCLPPEDDSYRE---LQDKGL 83 (272)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEE--EC-T--TCHHHHHHHHHHHHHTTCS---EEEECCCCCSSCCHHHH---HHHTTC
T ss_pred HHHHHHHHHHHHHHCC--CEEEEE--eC-C--CCHHHHHHHHHHHHHcCCC---EEEEecCccccHHHHHH---HHHcCC
Confidence 3346777788888888 665433 22 1 2556667788888888998 888777652 2333332 335799
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-..
T Consensus 84 PvV~~~~~ 91 (272)
T 3o74_A 84 PVIAIDRR 91 (272)
T ss_dssp CEEEESSC
T ss_pred CEEEEccC
Confidence 99998665
No 287
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=27.35 E-value=2.2e+02 Score=23.48 Aligned_cols=75 Identities=19% Similarity=0.114 Sum_probs=44.7
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
-+++||.|... ..+.+...|...| +++. .+. + ..++.+.+.+..+| +||. +.+..-++
T Consensus 8 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~~~~~~~d---lvllD~~l~~~~g~~ 68 (233)
T 1ys7_A 8 PRVLVVDDDSD---VLASLERGLRLSG--FEVA--TAV------D---GAEALRSATENRPD---AIVLDINMPVLDGVS 68 (233)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHHSCCS---EEEEESSCSSSCHHH
T ss_pred CeEEEEeCCHH---HHHHHHHHHHhCC--CEEE--EEC------C---HHHHHHHHHhCCCC---EEEEeCCCCCCCHHH
Confidence 47888887764 3445555666667 6542 232 2 33444555666666 6653 35666778
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+... ...+|++.+
T Consensus 69 ~~~~l~~~-~~~~~ii~l 85 (233)
T 1ys7_A 69 VVTALRAM-DNDVPVCVL 85 (233)
T ss_dssp HHHHHHHT-TCCCCEEEE
T ss_pred HHHHHHhc-CCCCCEEEE
Confidence 88776432 356787776
No 288
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=27.27 E-value=2.9e+02 Score=23.54 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH--hhHHHHHHHHhhcCC
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI--GDMCGYAAASYLRGV 124 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv--~D~ak~vA~~~~~g~ 124 (365)
..+.+-+.+.+++.| +++.+ +.. . .+.+.-.+.++.+.+.++| .||..+.... .+..+.+ ...++
T Consensus 18 ~~~~~gi~~~~~~~g--~~~~~--~~~-~--~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~~~~~~~~---~~~~i 84 (290)
T 2fn9_A 18 VVLAETAKQRAEQLG--YEATI--FDS-Q--NDTAKESAHFDAIIAAGYD---AIIFNPTDADGSIANVKRA---KEAGI 84 (290)
T ss_dssp HHHHHHHHHHHHHTT--CEEEE--EEC-T--TCHHHHHHHHHHHHHTTCS---EEEECCSCTTTTHHHHHHH---HHTTC
T ss_pred HHHHHHHHHHHHHcC--CEEEE--eCC-C--CCHHHHHHHHHHHHHcCCC---EEEEecCChHHHHHHHHHH---HHCCC
Confidence 346667777888888 66533 322 1 2445566677777788888 8887765322 1233322 34799
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-+.
T Consensus 85 PvV~~~~~ 92 (290)
T 2fn9_A 85 PVFCVDRG 92 (290)
T ss_dssp CEEEESSC
T ss_pred eEEEEecC
Confidence 99998665
No 289
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=27.17 E-value=3e+02 Score=23.70 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=49.7
Q ss_pred hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-----CCCHHHHHHHHHH-H-HHcCCCCc
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-----YKNMDTLMKVFDK-A-IESRLDRR 98 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-----~~~~~~v~~~~~~-~-~~~~~dr~ 98 (365)
+.++.+ +.+|+-|++- ......+.+.+.|.+.| +++....-.+... .-+.+.+.++++. + ...++|
T Consensus 110 ~al~~~-g~~rvglltp--y~~~~~~~~~~~l~~~G--iev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ad-- 182 (240)
T 3ixl_A 110 NGLRAL-GVRRVALATA--YIDDVNERLAAFLAEES--LVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSD-- 182 (240)
T ss_dssp HHHHHT-TCSEEEEEES--SCHHHHHHHHHHHHHTT--CEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCS--
T ss_pred HHHHHh-CCCEEEEEeC--ChHHHHHHHHHHHHHCC--CEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCC--
Confidence 445555 3689999985 23335677788888899 8764433222111 1245566666666 5 445555
Q ss_pred ceEEEecCc-hHhhHHHHHHHHhhcCCcEEEe
Q 017815 99 CTFVALGGG-VIGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 99 ~~IIaiGGG-sv~D~ak~vA~~~~~g~p~i~I 129 (365)
.||--..+ ...++...+ --..|+|++..
T Consensus 183 -aivL~CT~l~~l~~i~~l--e~~lg~PVids 211 (240)
T 3ixl_A 183 -GILLSSGGLLTLDAIPEV--ERRLGVPVVSS 211 (240)
T ss_dssp -EEEEECTTSCCTTHHHHH--HHHHSSCEEEH
T ss_pred -EEEEeCCCCchhhhHHHH--HHHhCCCEEeH
Confidence 44432322 133333322 22347777543
No 290
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=26.75 E-value=3.4e+02 Score=24.18 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=51.3
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+.+-++.... .+..+.+.+.+.+.+.| +.+.++ .. +.+.+.-.+.++.+.+.++| .||-.+....-+
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~--~~---~~~~~~~~~~~~~l~~~~vd---GiI~~~~~~~~~ 140 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQGG--LQLLLG--YT---AYSPEREEQLVETMLRRRPE---AMVLSYDGHTEQ 140 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHHTT--CEEEEE--EC---TTCHHHHHHHHHHHHHTCCS---EEEEECSCCCHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHHCC--CEEEEE--eC---CCChHHHHHHHHHHHhCCCC---EEEEeCCCCCHH
Confidence 3455555432 23336677778888888 665432 22 12455667778888888888 888887654333
Q ss_pred HHHHHHHHhhcCCcEEEec
Q 017815 112 MCGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IP 130 (365)
..+ .....++|+|.+-
T Consensus 141 ~~~---~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 141 TIR---LLQRASIPIVEIW 156 (355)
T ss_dssp HHH---HHHHCCSCEEEES
T ss_pred HHH---HHHhCCCCEEEEC
Confidence 322 2335799999983
No 291
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.69 E-value=1.2e+02 Score=22.80 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=45.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhh-CCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEE---ec-Cc
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVA---LG-GG 107 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~-~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIa---iG-GG 107 (365)
..+++||.|... ..+.+...|.+ .| +++. .+. +..++.+.+.+ ..+| +||. +. +.
T Consensus 4 ~~~ilivdd~~~---~~~~l~~~L~~~~~--~~v~--~~~---------~~~~a~~~l~~~~~~d---lvi~D~~l~~~~ 64 (140)
T 3lua_A 4 DGTVLLIDYFEY---EREKTKIIFDNIGE--YDFI--EVE---------NLKKFYSIFKDLDSIT---LIIMDIAFPVEK 64 (140)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHHCC--CEEE--EEC---------SHHHHHTTTTTCCCCS---EEEECSCSSSHH
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHhccC--ccEE--EEC---------CHHHHHHHHhcCCCCc---EEEEeCCCCCCC
Confidence 357888877764 34455566666 67 6543 333 23445555556 6666 6654 34 66
Q ss_pred hHhhHHHHHHHH-hhcCCcEEEe
Q 017815 108 VIGDMCGYAAAS-YLRGVSFIQI 129 (365)
Q Consensus 108 sv~D~ak~vA~~-~~~g~p~i~I 129 (365)
.-+++.+.+... ....+|++.+
T Consensus 65 ~g~~~~~~l~~~~~~~~~~ii~l 87 (140)
T 3lua_A 65 EGLEVLSAIRNNSRTANTPVIIA 87 (140)
T ss_dssp HHHHHHHHHHHSGGGTTCCEEEE
T ss_pred cHHHHHHHHHhCcccCCCCEEEE
Confidence 777887776431 2457888877
No 292
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=26.60 E-value=2.7e+02 Score=23.45 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=46.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||-|... ..+.+...|...| +++. .+. + ..++.+.+.+..+| +||- +.++.-+
T Consensus 23 ~~~ILivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~~~~~~~d---lvllD~~lp~~~g~ 83 (250)
T 3r0j_A 23 EARVLVVDDEAN---IVELLSVSLKFQG--FEVY--TAT------N---GAQALDRARETRPD---AVILDVXMPGMDGF 83 (250)
T ss_dssp SCEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHHHCCS---EEEEESCCSSSCHH
T ss_pred CceEEEEECCHH---HHHHHHHHHHHCC--CEEE--EEC------C---HHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 357888888764 3455566677777 6643 333 2 33445555666777 6654 4677778
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++++.+... ...+|++.+
T Consensus 84 ~~~~~lr~~-~~~~~ii~l 101 (250)
T 3r0j_A 84 GVLRRLRAD-GIDAPALFL 101 (250)
T ss_dssp HHHHHHHHT-TCCCCEEEE
T ss_pred HHHHHHHhc-CCCCCEEEE
Confidence 888877432 245677665
No 293
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=26.45 E-value=3.4e+02 Score=24.10 Aligned_cols=96 Identities=7% Similarity=0.007 Sum_probs=44.8
Q ss_pred hhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHH-----HHHHHHHcCCCCcce
Q 017815 26 CLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK-----VFDKAIESRLDRRCT 100 (365)
Q Consensus 26 ~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~-----~~~~~~~~~~dr~~~ 100 (365)
..++.+ +.++.++.....++...+...+..++.+ .. + +.++-.||. .+.. ..+.+.+.+-+-+.+
T Consensus 107 ~~~~~~--Ga~v~~~~~~~~~~~~~~~a~~l~~~~~--~~---~-~~~~~~n~~--~~~~~~~t~~~Ei~~q~~~~~d~v 176 (313)
T 2q3b_A 107 MLLRAY--GAELILTPGADGMSGAIAKAEELAKTDQ--RY---F-VPQQFENPA--NPAIHRVTTAEEVWRDTDGKVDIV 176 (313)
T ss_dssp HHHHHT--TCEEEEECGGGHHHHHHHHHHHHHHHCT--TE---E-CCCTTTCTH--HHHHHHHTHHHHHHHHTTTCCCEE
T ss_pred HHHHHC--CCEEEEeCCCCCHHHHHHHHHHHHHhCC--CE---E-eCCCCCChh--hHHHHHHHHHHHHHHHcCCCCCEE
Confidence 344545 5677666543333434444455455544 21 2 222222332 2211 223333332233569
Q ss_pred EEEecCchHhhH-HHHHHHHhhcCCcEEEeccc
Q 017815 101 FVALGGGVIGDM-CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 101 IIaiGGGsv~D~-ak~vA~~~~~g~p~i~IPTT 132 (365)
|+++|+|..+=- +++.. .....++++.|-..
T Consensus 177 vvpvG~GG~~~Gi~~~~k-~~~~~~~vi~ve~~ 208 (313)
T 2q3b_A 177 VAGVGTGGTITGVAQVIK-ERKPSARFVAVEPA 208 (313)
T ss_dssp EEECSSSHHHHHHHHHHH-HHCTTCEEEEEEET
T ss_pred EEccCcchhHHHHHHHHH-HhCCCCEEEEEeeC
Confidence 999999876522 22221 12245678877555
No 294
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=26.35 E-value=2.3e+02 Score=24.45 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=43.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEEecCchHhhHH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIaiGGGsv~D~a 113 (365)
+.++++..++..+ ..+++.. +.+ ....+.++. .++++..+.+....+ .++| +||+=|| .|
T Consensus 14 ~ii~i~~~~~L~~-~~~~i~~---e~~--~~~~I~vi~-----~~le~av~~a~~~~~~~~~d---VIISRGg-----ta 74 (225)
T 2pju_A 14 PVIWTVSVTRLFE-LFRDISL---EFD--HLANITPIQ-----LGFEKAVTYIRKKLANERCD---AIIAAGS-----NG 74 (225)
T ss_dssp CEEEEECCHHHHH-HHHHHHT---TTT--TTCEEEEEC-----CCHHHHHHHHHHHTTTSCCS---EEEEEHH-----HH
T ss_pred CEEEEEchHHHHH-HHHHHHH---hhC--CCceEEEec-----CcHHHHHHHHHHHHhcCCCe---EEEeCCh-----HH
Confidence 5566666666554 3333333 322 222233333 256666665555433 3566 9988775 34
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
.++. -..++|+|.||.|
T Consensus 75 ~~Lr--~~~~iPVV~I~vs 91 (225)
T 2pju_A 75 AYLK--SRLSVPVILIKPS 91 (225)
T ss_dssp HHHH--TTCSSCEEEECCC
T ss_pred HHHH--hhCCCCEEEecCC
Confidence 5552 2358999999999
No 295
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=26.31 E-value=1.8e+02 Score=20.69 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=43.4
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhhH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGDM 112 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D~ 112 (365)
+++||.|... ..+.+.+.|...| +.+. ... + ..+..+.+.+..+| +|+- +.+..-.++
T Consensus 3 ~ilivdd~~~---~~~~l~~~l~~~~--~~v~--~~~------~---~~~a~~~~~~~~~d---lvl~D~~l~~~~g~~~ 63 (116)
T 3a10_A 3 RILVVDDEPN---IRELLKEELQEEG--YEID--TAE------N---GEEALKKFFSGNYD---LVILDIEMPGISGLEV 63 (116)
T ss_dssp EEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHHSCCS---EEEECSCCSSSCHHHH
T ss_pred EEEEEeCCHH---HHHHHHHHHHHCC--CEEE--EeC------C---HHHHHHHHhcCCCC---EEEEECCCCCCCHHHH
Confidence 6777777654 3455556666677 6542 222 2 33444555666666 6653 456666788
Q ss_pred HHHHHHHhhcCCcEEEec
Q 017815 113 CGYAAASYLRGVSFIQIP 130 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~IP 130 (365)
.+.+... ...+|++.+-
T Consensus 64 ~~~l~~~-~~~~~ii~~s 80 (116)
T 3a10_A 64 AGEIRKK-KKDAKIILLT 80 (116)
T ss_dssp HHHHHHH-CTTCCEEEEE
T ss_pred HHHHHcc-CCCCeEEEEE
Confidence 8776432 3467777763
No 296
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=26.29 E-value=2.9e+02 Score=23.25 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcE
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 126 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~ 126 (365)
..+.+-+.+.+++.| +++.+ +.. . .+.+.-.+.++.+...++| .||-.+....-+..+.+ ...++|+
T Consensus 19 ~~~~~gi~~~~~~~g--~~~~~--~~~-~--~~~~~~~~~~~~l~~~~vd---gii~~~~~~~~~~~~~l---~~~~iPv 85 (275)
T 3d8u_A 19 AHFLPSFQQALNKAG--YQLLL--GYS-D--YSIEQEEKLLSTFLESRPA---GVVLFGSEHSQRTHQLL---EASNTPV 85 (275)
T ss_dssp HHHHHHHHHHHHHTS--CEECC--EEC-T--TCHHHHHHHHHHHHTSCCC---CEEEESSCCCHHHHHHH---HHHTCCE
T ss_pred HHHHHHHHHHHHHCC--CEEEE--EcC-C--CCHHHHHHHHHHHHhcCCC---EEEEeCCCCCHHHHHHH---HhCCCCE
Confidence 346677777888888 66432 221 1 2445566777788888888 88877754322333322 2469999
Q ss_pred EEeccc
Q 017815 127 IQIPTT 132 (365)
Q Consensus 127 i~IPTT 132 (365)
|.+-..
T Consensus 86 V~~~~~ 91 (275)
T 3d8u_A 86 LEIAEL 91 (275)
T ss_dssp EEESSS
T ss_pred EEEeec
Confidence 998654
No 297
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=26.07 E-value=2.7e+02 Score=22.70 Aligned_cols=88 Identities=25% Similarity=0.227 Sum_probs=48.5
Q ss_pred CceEEEEEccCchH---HHHHHHHHHHhhCC-C-CceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec---
Q 017815 34 GKKVLVVTNNTVAP---LYLDKVTDALTRGN-P-NVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--- 105 (365)
Q Consensus 34 ~~~~livtd~~~~~---~~~~~v~~~L~~~g-~-~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG--- 105 (365)
+.|+.||..+.-.. .+.+-..+.|.+.| . .-++..+.+|+.- |-=..+-..++..++| .||++|
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGaf-----EiP~aa~~la~~~~yD---avIaLG~VI 83 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAY-----ELPLATEALAKSGKYD---AVVALGTVI 83 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTT-----THHHHHHHHHHHCSCS---EEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHH-----HHHHHHHHHHhcCCCC---EEEEeeeee
Confidence 46788888775433 35556666777776 3 1134556677633 3222222223455677 999999
Q ss_pred -CchHhh--HHHHHHH-----HhhcCCcEEEe
Q 017815 106 -GGVIGD--MCGYAAA-----SYLRGVSFIQI 129 (365)
Q Consensus 106 -GGsv~D--~ak~vA~-----~~~~g~p~i~I 129 (365)
|++..+ ++..++. ....++|++.-
T Consensus 84 rG~T~Hfd~Va~~v~~Gl~~v~L~~~vPV~~G 115 (156)
T 3nq4_A 84 RGGTAHFEYVAGGASNGLASVAQDSGVPVAFG 115 (156)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cCCchHHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 666544 2222211 13457887763
No 298
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=26.05 E-value=1.6e+02 Score=25.33 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=26.8
Q ss_pred CcceEEEecCch-Hh------hHHHHHHHHhhcCCcEEEecccc
Q 017815 97 RRCTFVALGGGV-IG------DMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 97 r~~~IIaiGGGs-v~------D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
.-|.||-.||-. .- ++.+++...+.+|.++.+|++..
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~ 141 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGP 141 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCH
Confidence 346888888843 32 35566666678899999999974
No 299
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=26.02 E-value=1.2e+02 Score=27.02 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=22.3
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEE
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENV 69 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~ 69 (365)
+|+|||-+.. +..-.+.+.+.|++.| ++|..+
T Consensus 5 ~~vLiV~g~~-~~~~a~~l~~aL~~~g--~~V~~i 36 (259)
T 3rht_A 5 TRVLYCGDTS-LETAAGYLAGLMTSWQ--WEFDYI 36 (259)
T ss_dssp -CEEEEESSC-TTTTHHHHHHHHHHTT--CCCEEE
T ss_pred ceEEEECCCC-chhHHHHHHHHHHhCC--ceEEEe
Confidence 6899996543 4445677888888888 887654
No 300
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=25.98 E-value=1.3e+02 Score=21.26 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=38.2
Q ss_pred CccceecccccccccceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEE
Q 017815 2 TPKALLYKDRFFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVE 67 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~ 67 (365)
+|...+--.+.-+|.+++-.. +.++++..+..+.|++|.... .+-|.+.++..| +++.
T Consensus 8 ~~~~~lD~rGl~CP~Pvl~~k---kal~~l~~G~~l~V~~dd~~a---~~di~~~~~~~G--~~~~ 65 (82)
T 3lvj_C 8 SPDHTLDALGLRCPEPVMMVR---KTVRNMQPGETLLIIADDPAT---TRDIPGFCTFME--HELV 65 (82)
T ss_dssp CCSEEEECTTCCTTHHHHHHH---HHHHTSCTTCEEEEEECCTTH---HHHHHHHHHHTT--CEEE
T ss_pred CCCEEEECCCCCCCHHHHHHH---HHHHhCCCCCEEEEEECCccH---HHHHHHHHHHCC--CEEE
Confidence 567777778888888877333 345555456777777776653 455666777888 5553
No 301
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=25.86 E-value=2.7e+02 Score=22.70 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=44.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
-+++||.|... ..+.+...|...| +++. .+. + ..+..+.+.+..+| +||- +.+..-.+
T Consensus 3 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~~~~~~~d---lvllD~~l~~~~g~~ 63 (225)
T 1kgs_A 3 VRVLVVEDERD---LADLITEALKKEM--FTVD--VCY------D---GEEGMYMALNEPFD---VVILDIMLPVHDGWE 63 (225)
T ss_dssp CEEEEECSSHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHHSCCS---EEEEESCCSSSCHHH
T ss_pred ceEEEEeCCHH---HHHHHHHHHHHCC--CEEE--EEC------C---HHHHHHHHhcCCCC---EEEEeCCCCCCCHHH
Confidence 36788877754 3445555666667 6542 232 2 33444555666676 6653 45667778
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+... ...+|++.+
T Consensus 64 ~~~~lr~~-~~~~~ii~l 80 (225)
T 1kgs_A 64 ILKSMRES-GVNTPVLML 80 (225)
T ss_dssp HHHHHHHT-TCCCCEEEE
T ss_pred HHHHHHhc-CCCCCEEEE
Confidence 88777432 246787776
No 302
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=25.77 E-value=2.1e+02 Score=21.30 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=44.0
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||-|... ..+.+...|...| +.+. ... + ..++.+.+.+..+| +||- +.|..-++
T Consensus 4 ~~ILivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~l~~~~~d---lvi~D~~l~~~~g~~ 64 (138)
T 3c3m_A 4 YTILVVDDSPM---IVDVFVTMLERGG--YRPI--TAF------S---GEECLEALNATPPD---LVLLDIMMEPMDGWE 64 (138)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHHSCCS---EEEEESCCSSSCHHH
T ss_pred ceEEEEeCCHH---HHHHHHHHHHHcC--ceEE--EeC------C---HHHHHHHHhccCCC---EEEEeCCCCCCCHHH
Confidence 46777777654 3445555666667 5542 222 2 33444555666666 6653 45666778
Q ss_pred HHHHHHHHh-hcCCcEEEe
Q 017815 112 MCGYAAASY-LRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~-~~g~p~i~I 129 (365)
+.+.+.... ...+|++.+
T Consensus 65 ~~~~l~~~~~~~~~~ii~l 83 (138)
T 3c3m_A 65 TLERIKTDPATRDIPVLML 83 (138)
T ss_dssp HHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHcCcccCCCCEEEE
Confidence 887764321 245777776
No 303
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.72 E-value=2.1e+02 Score=21.30 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=44.0
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHH--HcCCCCcceEEE---ecCchH
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI--ESRLDRRCTFVA---LGGGVI 109 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~--~~~~dr~~~IIa---iGGGsv 109 (365)
.+++||.|... ..+.+.+.|...| +.+. .+. +. .+..+.+. +..+| +||. +.+...
T Consensus 4 ~~ilivdd~~~---~~~~l~~~l~~~g--~~v~--~~~------~~---~~a~~~~~~~~~~~d---lvi~d~~l~~~~g 64 (143)
T 3jte_A 4 AKILVIDDEST---ILQNIKFLLEIDG--NEVL--TAS------SS---TEGLRIFTENCNSID---VVITDMKMPKLSG 64 (143)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------SH---HHHHHHHHHTTTTCC---EEEEESCCSSSCH
T ss_pred CEEEEEcCCHH---HHHHHHHHHHhCC--ceEE--EeC------CH---HHHHHHHHhCCCCCC---EEEEeCCCCCCcH
Confidence 47778777654 3455666677777 5542 232 23 33444445 34555 6653 367777
Q ss_pred hhHHHHHHHHhhcCCcEEEe
Q 017815 110 GDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~I 129 (365)
+++.+.+... ...+|++.+
T Consensus 65 ~~~~~~l~~~-~~~~~ii~l 83 (143)
T 3jte_A 65 MDILREIKKI-TPHMAVIIL 83 (143)
T ss_dssp HHHHHHHHHH-CTTCEEEEE
T ss_pred HHHHHHHHHh-CCCCeEEEE
Confidence 8888877532 346777766
No 304
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=25.60 E-value=2.2e+02 Score=21.48 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=44.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
.-|++||-|... ..+.+.+.|...| +.+. .+. + ..++.+.+.+..+| +||- +.|..-+
T Consensus 14 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~~~~~~~d---lvl~D~~mp~~~g~ 74 (143)
T 3m6m_D 14 SMRMLVADDHEA---NRMVLQRLLEKAG--HKVL--CVN------G---AEQVLDAMAEEDYD---AVIVDLHMPGMNGL 74 (143)
T ss_dssp -CEEEEECSSHH---HHHHHHHHHHC----CEEE--EES------S---HHHHHHHHHHSCCS---EEEEESCCSSSCHH
T ss_pred cceEEEEeCCHH---HHHHHHHHHHHcC--CeEE--EeC------C---HHHHHHHHhcCCCC---EEEEeCCCCCCCHH
Confidence 357888877654 3445566677777 5543 232 2 23445556667777 6664 4677778
Q ss_pred hHHHHHHHHh---hcCCcEEEec
Q 017815 111 DMCGYAAASY---LRGVSFIQIP 130 (365)
Q Consensus 111 D~ak~vA~~~---~~g~p~i~IP 130 (365)
++.+.+.... .+.+|++.+.
T Consensus 75 ~~~~~lr~~~~~~~~~~pii~~s 97 (143)
T 3m6m_D 75 DMLKQLRVMQASGMRYTPVVVLS 97 (143)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEE
T ss_pred HHHHHHHhchhccCCCCeEEEEe
Confidence 8888774322 2346777763
No 305
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=25.52 E-value=2e+02 Score=20.96 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=44.6
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEE---ecC-ch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVA---LGG-GV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIa---iGG-Gs 108 (365)
..+++||.|... ..+.+.+.|...| +++. .+. + ..++.+.+.+. .+| +||. +.+ ..
T Consensus 5 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~~d---lvi~d~~l~~~~~ 65 (132)
T 2rdm_A 5 AVTILLADDEAI---LLLDFESTLTDAG--FLVT--AVS------S---GAKAIEMLKSGAAID---GVVTDIRFCQPPD 65 (132)
T ss_dssp SCEEEEECSSHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHTTCCCC---EEEEESCCSSSSC
T ss_pred CceEEEEcCcHH---HHHHHHHHHHHcC--CEEE--EEC------C---HHHHHHHHHcCCCCC---EEEEeeeCCCCCC
Confidence 357888777654 3455566677777 6543 232 2 34444555555 566 6653 343 66
Q ss_pred HhhHHHHHHHHhhcCCcEEEe
Q 017815 109 IGDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~I 129 (365)
..++.+.+... ...+|++.+
T Consensus 66 g~~~~~~l~~~-~~~~~ii~~ 85 (132)
T 2rdm_A 66 GWQVARVAREI-DPNMPIVYI 85 (132)
T ss_dssp HHHHHHHHHHH-CTTCCEEEE
T ss_pred HHHHHHHHHhc-CCCCCEEEE
Confidence 77888777543 346788877
No 306
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=25.51 E-value=2.4e+02 Score=25.96 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=48.4
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
+|++||-|... ..+.+...|...| +.+. ... +..++.+.+.+..+| +||- +.|..-++
T Consensus 1 ~~ILiVDDd~~---~~~~l~~~L~~~g--~~v~--~a~---------~~~eal~~l~~~~~D---lvllDi~mP~~dG~e 61 (368)
T 3dzd_A 1 KRVLVVDDEES---ITSSLSAILEEEG--YHPD--TAK---------TLREAEKKIKELFFP---VIVLDVWMPDGDGVN 61 (368)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES---------SHHHHHHHHHHBCCS---EEEEESEETTEETTT
T ss_pred CEEEEEeCCHH---HHHHHHHHHHHcC--CEEE--EEC---------CHHHHHHHHHhCCCC---EEEEeCCCCCCCHHH
Confidence 47888888764 3445566677777 6542 222 234455666777777 7764 67888889
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+.+.+... ...+|+|.+
T Consensus 62 ll~~lr~~-~~~~pvI~l 78 (368)
T 3dzd_A 62 FIDFIKEN-SPDSVVIVI 78 (368)
T ss_dssp HHHHHHHH-CTTCEEEEE
T ss_pred HHHHHHhh-CCCCeEEEE
Confidence 98877533 356787776
No 307
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=25.49 E-value=1.7e+02 Score=22.00 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=44.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhC-CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEE---ecCch
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVA---LGGGV 108 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~-g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIa---iGGGs 108 (365)
..+++|+-|... ..+.+.+.|++. | +.+. ..+. +..++.+.+.+. .+| +||- +.|..
T Consensus 13 ~~~vlivdd~~~---~~~~l~~~L~~~~~--~~~v-~~~~---------~~~~al~~l~~~~~~d---lvilD~~l~~~~ 74 (145)
T 3kyj_B 13 PYNVMIVDDAAM---MRLYIASFIKTLPD--FKVV-AQAA---------NGQEALDKLAAQPNVD---LILLDIEMPVMD 74 (145)
T ss_dssp SEEEEEECSCHH---HHHHHHHHHTTCTT--EEEE-EEES---------SHHHHHHHHHHCTTCC---EEEECTTSCCCT
T ss_pred CCeEEEEcCCHH---HHHHHHHHHHhCCC--ceEE-EEEC---------CHHHHHHHHhcCCCCC---EEEEeCCCCCCC
Confidence 456777766654 455566667765 5 4431 1222 344555566666 677 6654 46777
Q ss_pred HhhHHHHHHHHhhcCCcEEEecc
Q 017815 109 IGDMCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 109 v~D~ak~vA~~~~~g~p~i~IPT 131 (365)
-+++++.+... ...|++.+.+
T Consensus 75 g~~~~~~lr~~--~~~~iiil~~ 95 (145)
T 3kyj_B 75 GMEFLRHAKLK--TRAKICMLSS 95 (145)
T ss_dssp TCHHHHHHHHH--CCCEEC-CBS
T ss_pred HHHHHHHHHhc--CCCCeEEEEE
Confidence 78888877432 3466665544
No 308
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=25.48 E-value=3.4e+02 Score=23.67 Aligned_cols=77 Identities=5% Similarity=0.022 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCc
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 125 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p 125 (365)
+..+.+-+.+.+++.| +++.++ . . +.+.+.-.+.++.+...++| .||-.+.... .....+......|+|
T Consensus 18 ~~~~~~gi~~~a~~~g--~~~~~~--~-~--~~~~~~~~~~i~~~~~~~vd---giIi~~~~~~-~~~~~~~~~~~~giP 86 (330)
T 3uug_A 18 WIDDGNNIVKQLQEAG--YKTDLQ--Y-A--DDDIPNQLSQIENMVTKGVK---VLVIASIDGT-TLSDVLKQAGEQGIK 86 (330)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEE--E-C--TTCHHHHHHHHHHHHHHTCS---EEEECCSSGG-GGHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHcC--CEEEEe--e-C--CCCHHHHHHHHHHHHHcCCC---EEEEEcCCch-hHHHHHHHHHHCCCC
Confidence 4446777888888888 765433 2 1 23556666777777788888 8887765431 111222223457999
Q ss_pred EEEecccc
Q 017815 126 FIQIPTTV 133 (365)
Q Consensus 126 ~i~IPTTl 133 (365)
+|.+-+..
T Consensus 87 vV~~~~~~ 94 (330)
T 3uug_A 87 VIAYDRLI 94 (330)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99997763
No 309
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=24.81 E-value=3.2e+02 Score=23.19 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEE
Q 017815 48 LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 127 (365)
Q Consensus 48 ~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i 127 (365)
.+.+-+.+.+++.| +++. .+. ...+.+.+.-.+.++.+.+.++| .||..+.... ++...+......++|+|
T Consensus 24 ~~~~gi~~~a~~~g--~~~~--~~~-~~~~~~~~~~~~~~~~l~~~~vd---gii~~~~~~~-~~~~~~~~~~~~~iPvV 94 (289)
T 3brs_A 24 VLVEGAQMAAKEYE--IKLE--FMA-PEKEEDYLVQNELIEEAIKRKPD---VILLAAADYE-KTYDAAKEIKDAGIKLI 94 (289)
T ss_dssp HHHHHHHHHHHHHT--CEEE--ECC-CSSTTCHHHHHHHHHHHHHTCCS---EEEECCSCTT-TTHHHHTTTGGGTCEEE
T ss_pred HHHHHHHHHHHHcC--CEEE--Eec-CCCCCCHHHHHHHHHHHHHhCCC---EEEEeCCChH-HhHHHHHHHHHCCCcEE
Confidence 35666777777777 6543 222 11122455666777778888888 8887765432 21122222234689999
Q ss_pred Eeccc
Q 017815 128 QIPTT 132 (365)
Q Consensus 128 ~IPTT 132 (365)
.+-+.
T Consensus 95 ~~~~~ 99 (289)
T 3brs_A 95 VIDSG 99 (289)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 98654
No 310
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.81 E-value=2e+02 Score=24.58 Aligned_cols=80 Identities=4% Similarity=0.120 Sum_probs=50.4
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCce-EEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVS-VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~-v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
+++-++.... .+..+.+.+.+.+.+.| ++ +. .+.. ..+.+.-.+.++.+...++| .||-.+ ..+
T Consensus 11 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~--~~~~---~~~~~~~~~~~~~l~~~~vd---giIi~~--~~~ 78 (277)
T 3hs3_A 11 KMIGIIIPDLNNRFYAQIIDGIQEVIQKEG--YTALI--SFST---NSDVKKYQNAIINFENNNVD---GIITSA--FTI 78 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTT--CEEEE--EECS---SCCHHHHHHHHHHHHHTTCS---EEEEEC--CCC
T ss_pred CEEEEEeCCCCChhHHHHHHHHHHHHHHCC--CCEEE--EEeC---CCChHHHHHHHHHHHhCCCC---EEEEcc--hHH
Confidence 4555555432 23346777778888888 66 43 2332 22556667778888888998 888887 221
Q ss_pred hHHHHHHHHhhcCCcEEEeccc
Q 017815 111 DMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+ .....++|+|.+-..
T Consensus 79 ~------~~~~~~iPvV~~~~~ 94 (277)
T 3hs3_A 79 P------PNFHLNTPLVMYDSA 94 (277)
T ss_dssp C------TTCCCSSCEEEESCC
T ss_pred H------HHHhCCCCEEEEccc
Confidence 1 123468999998665
No 311
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=24.41 E-value=68 Score=26.27 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=22.9
Q ss_pred ccCCceEEEEEccCchHH-HHHHHHHHHhhCCCCceE
Q 017815 31 HVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSV 66 (365)
Q Consensus 31 ~~~~~~~livtd~~~~~~-~~~~v~~~L~~~g~~i~v 66 (365)
+..++|.+|+.+..+... ..+.+.+..+..| +.|
T Consensus 31 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~--iPV 65 (170)
T 3cf4_G 31 ISKAKRPLLMVGTLALDPELLDRVVKISKAAN--IPI 65 (170)
T ss_dssp HHHCSSEEEEECSTTCCHHHHHHHHHHHHHHT--CCE
T ss_pred HHcCCCCEEEECCCccchhHHHHHHHHHHHhC--CCE
Confidence 334799999999987543 5666666666655 554
No 312
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=24.24 E-value=3.5e+02 Score=23.44 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH--hhHHHHHHHHhhcC
Q 017815 46 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI--GDMCGYAAASYLRG 123 (365)
Q Consensus 46 ~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv--~D~ak~vA~~~~~g 123 (365)
+..+.+-+.+.+++.| +++.+ +... ..+.+.-.+.++.+...++| .||..+.... .+..+. ....+
T Consensus 15 ~~~~~~gi~~~~~~~g--~~~~~--~~~~--~~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~~~~~~~~---~~~~~ 82 (313)
T 2h3h_A 15 WSQVEQGVKAAGKALG--VDTKF--FVPQ--KEDINAQLQMLESFIAEGVN---GIAIAPSDPTAVIPTIKK---ALEMG 82 (313)
T ss_dssp HHHHHHHHHHHHHHHT--CEEEE--ECCS--SSCHHHHHHHHHHHHHTTCS---EEEECCSSTTTTHHHHHH---HHHTT
T ss_pred HHHHHHHHHHHHHHcC--CEEEE--ECCC--CCCHHHHHHHHHHHHHcCCC---EEEEeCCChHHHHHHHHH---HHHCC
Confidence 3345666677777777 66532 2211 22455666677777778888 8887765432 133332 23479
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|+|.+-+.
T Consensus 83 iPvV~~~~~ 91 (313)
T 2h3h_A 83 IPVVTLDTD 91 (313)
T ss_dssp CCEEEESSC
T ss_pred CeEEEeCCC
Confidence 999998655
No 313
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=24.18 E-value=2.8e+02 Score=23.72 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=59.4
Q ss_pred cceecccccccccceeeecccchhhhhccC-CceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCC
Q 017815 4 KALLYKDRFFGNSDTLLLISNNCLYYRHVQ-GKKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN 79 (365)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~ 79 (365)
|.++.|...+.... ++.-..+.++++.. .+|+++|.-. .-++.+.+.+.+.|++.| +++. .+.. . ++
T Consensus 2 ~llL~S~~~~~~~~--~l~~~~~~l~~~~~~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG--~~~~--~v~~-~--~d 72 (229)
T 1fy2_A 2 ELLLLSNSTLPGKA--WLEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLG--VNVT--GIHR-V--AD 72 (229)
T ss_dssp EEEEESCSCCTTSC--TTTTTHHHHHHHHTTCCEEEEECTTCCSSCHHHHHHHHHHHHGGGT--CEEE--ETTS-S--SC
T ss_pred eEEEEcCCCCCCCc--HHHHHHHHHHHHhcCCCeEEEEECCCCCCCHHHHHHHHHHHHHHCC--CEEE--EEec-c--cc
Confidence 34555555433321 12222344555432 4677777533 223457888899999988 6543 3321 0 11
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH---------hhcCCcEEEeccc
Q 017815 80 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---------YLRGVSFIQIPTT 132 (365)
Q Consensus 80 ~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~---------~~~g~p~i~IPTT 132 (365)
..+.+.+ +| .|-++||...++.+..... +..|.|++-+.--
T Consensus 73 ------~~~~l~~--ad----~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 73 ------PLAAIEK--AE----IIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp ------HHHHHHH--CS----EEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred ------HHHHHhc--CC----EEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 1133333 46 6667889999998877531 2468887766433
No 314
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=24.08 E-value=3.2e+02 Score=24.91 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=23.8
Q ss_pred cCCCCcceEEEecCchHhhH-HHHHHHHhhcCCcEEEeccc
Q 017815 93 SRLDRRCTFVALGGGVIGDM-CGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 93 ~~~dr~~~IIaiGGGsv~D~-ak~vA~~~~~g~p~i~IPTT 132 (365)
.+-+-+.+|+++|||..+-- +++.. .....++++.|-..
T Consensus 189 ~~~~~d~vv~~vGgGG~~~Gi~~~~k-~~~p~v~vigVep~ 228 (344)
T 3vc3_A 189 TNGQVDIFVMGIGSGGTVSGVGQYLK-SKNPNVKIYGVEPS 228 (344)
T ss_dssp TTTCCCEEEEECSSSHHHHHHHHHHH-HHCTTCEEEEEEEG
T ss_pred hCCCceEEEEecCCccchHHHhhhhH-hhCCCceEEEEcCC
Confidence 33334568889999887643 33322 23457888888655
No 315
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=24.03 E-value=3.7e+02 Score=23.69 Aligned_cols=86 Identities=7% Similarity=0.063 Sum_probs=50.9
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+-+.+.+.+.| +++.+ +.. + .+.+...+.++.+.+.++| .||-.+....-+
T Consensus 59 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~--~~~-~--~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~ 128 (340)
T 1qpz_A 59 KSIGLLATSSEAAYFAEIIEAVEKNCFQKG--YTLIL--GNA-W--NNLEKQRAYLSMMAQKRVD---GLLVMCSEYPEP 128 (340)
T ss_dssp SEEEEEESCSCSHHHHHHHHHHHHHHHHTT--CEEEE--EEC-T--TCHHHHHHHHHHHHHTTCS---EEEECCSCCCHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcC--CEEEE--EeC-C--CCHHHHHHHHHHHHcCCCC---EEEEeCCCCChH
Confidence 4555555332 23336667777788888 66543 222 1 2455666777888888888 888776543222
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
....+. -..++|+|.+-..
T Consensus 129 ~~~~l~--~~~~iPvV~~~~~ 147 (340)
T 1qpz_A 129 LLAMLE--EYRHIPMVVMDWG 147 (340)
T ss_dssp HHHHHH--TTTTSCEEEEEES
T ss_pred HHHHHH--hhCCCCEEEEecc
Confidence 333321 1268999998554
No 316
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=24.01 E-value=2.6e+02 Score=23.72 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=44.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||-|... ..+.+...|...| +.+ ..+. +..++.+.+.+..+| +||- +.++.-+
T Consensus 37 ~~~ILivdd~~~---~~~~l~~~L~~~g--~~v--~~~~---------~~~~al~~~~~~~~D---lvllD~~lp~~~G~ 97 (249)
T 3q9s_A 37 EQRILVIEDDHD---IANVLRMDLTDAG--YVV--DHAD---------SAMNGLIKAREDHPD---LILLDLGLPDFDGG 97 (249)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHTTT--CEE--EEES---------SHHHHHHHHHHSCCS---EEEEECCSCHHHHH
T ss_pred CCEEEEEECCHH---HHHHHHHHHHHCC--CEE--EEeC---------CHHHHHHHHhcCCCC---EEEEcCCCCCCCHH
Confidence 357888888765 3455566677777 543 2222 234445566667777 6654 4566777
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++++.+.. ...+|++.+
T Consensus 98 ~l~~~lr~--~~~~~iI~l 114 (249)
T 3q9s_A 98 DVVQRLRK--NSALPIIVL 114 (249)
T ss_dssp HHHHHHHT--TCCCCEEEE
T ss_pred HHHHHHHc--CCCCCEEEE
Confidence 77776632 345666665
No 317
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=23.88 E-value=2.4e+02 Score=25.40 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCchHh
Q 017815 81 DTLMKVFDKAIESRLDRRCTFVALGGGVIG 110 (365)
Q Consensus 81 ~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~ 110 (365)
....++++++.+.+.+-+.+|+++|+|..+
T Consensus 174 t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~ 203 (338)
T 1tzj_A 174 GFAEEVRAQEAELGFKFDYVVVCSVTGSTQ 203 (338)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEEESSSHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCcHHH
Confidence 345677777764332334688889888765
No 318
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=23.80 E-value=1.9e+02 Score=26.23 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=54.2
Q ss_pred cCchHHHHHHHHHHHhhCCCCceEEEEEeC--CCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 43 NTVAPLYLDKVTDALTRGNPNVSVENVILP--DGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 43 ~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~--~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
..+.....+++.+.+-++| ++- +.+. .|| +.=|.++-.++++.+.+.-..|--+|+++|. ++-|+...+..+
T Consensus 28 g~iD~~~l~~lv~~li~~G--v~G--l~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A 102 (316)
T 3e96_A 28 GSIDWHHYKETVDRIVDNG--IDV--IVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAA 102 (316)
T ss_dssp CCBCHHHHHHHHHHHHTTT--CCE--ECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC--CCE--EEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHH
Confidence 3444445667777777788 542 2222 245 3456777778888877754445569999986 888887776655
Q ss_pred hhcCCcEEEec
Q 017815 120 YLRGVSFIQIP 130 (365)
Q Consensus 120 ~~~g~p~i~IP 130 (365)
...|..-+.+.
T Consensus 103 ~~~Gadavlv~ 113 (316)
T 3e96_A 103 KAAGADAVMIH 113 (316)
T ss_dssp HHHTCSEEEEC
T ss_pred HhcCCCEEEEc
Confidence 56677776663
No 319
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=23.60 E-value=2.5e+02 Score=24.10 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=42.8
Q ss_pred ceEEEEEcc---CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNN---TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~---~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++... ..+..+.+-+.+.+++.| +++.++ ++. .. +.+.-.+.++.+.+.++| .||..+....-+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~-~~~-~~--~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~ 79 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNG--YNLIIV-YSG-SA--DPEEQKHALLTAIERPVM---GILLLSIALTDD 79 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTT--CEEEEE-C-------------CHHHHHHSSCCS---EEEEESCC----
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcC--CeEEEE-eCC-CC--CHHHHHHHHHHHHhcCCC---EEEEecccCCHH
Confidence 455555432 233446777777888888 665332 121 11 223334556666777888 888777553222
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
..+. ....++|+|.+-+.
T Consensus 80 ~~~~---l~~~~iPvV~~~~~ 97 (290)
T 3clk_A 80 NLQL---LQSSDVPYCFLSMG 97 (290)
T ss_dssp CHHH---HHCC--CEEEESCC
T ss_pred HHHH---HHhCCCCEEEEcCC
Confidence 2222 23468999998665
No 320
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=23.48 E-value=1.6e+02 Score=24.05 Aligned_cols=99 Identities=9% Similarity=0.013 Sum_probs=56.7
Q ss_pred cchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE
Q 017815 24 NNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 103 (365)
Q Consensus 24 ~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa 103 (365)
..+.++.+..+-++.++|+.... ..+.+.+.|... ++..+..-+-+...|+.+.+..+++.+...|++.. -++.
T Consensus 104 ~~~~l~~l~~~~~~~i~tn~~~~--~~~~~l~~l~~~---fd~i~~~~~~~~~KP~~~~~~~~l~~~~~lgi~~~-~~~~ 177 (240)
T 3smv_A 104 TVEALQYLKKHYKLVILSNIDRN--EFKLSNAKLGVE---FDHIITAQDVGSYKPNPNNFTYMIDALAKAGIEKK-DILH 177 (240)
T ss_dssp HHHHHHHHHHHSEEEEEESSCHH--HHHHHHTTTCSC---CSEEEEHHHHTSCTTSHHHHHHHHHHHHHTTCCGG-GEEE
T ss_pred HHHHHHHHHhCCeEEEEeCCChh--HHHHHHHhcCCc---cCEEEEccccCCCCCCHHHHHHHHHHHHhcCCCch-hEEE
Confidence 34455554334578888887532 222222223322 44322111123345677777777666677788754 4678
Q ss_pred ecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 104 LGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 104 iGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
||-+.--|+..+-+ .|++.+.+.+.
T Consensus 178 vGD~~~~Di~~a~~----aG~~~~~~~~~ 202 (240)
T 3smv_A 178 TAESLYHDHIPAND----AGLVSAWIYRR 202 (240)
T ss_dssp EESCTTTTHHHHHH----HTCEEEEECTT
T ss_pred ECCCchhhhHHHHH----cCCeEEEEcCC
Confidence 99987778764433 48888888765
No 321
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=23.42 E-value=2e+02 Score=20.44 Aligned_cols=74 Identities=12% Similarity=0.015 Sum_probs=41.9
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhhH
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGDM 112 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D~ 112 (365)
+++||.|... ..+.+.+.|...| +++. .+. + ..+..+.+.+..+| +++- +.+..-.++
T Consensus 2 ~ilivdd~~~---~~~~l~~~l~~~g--~~v~--~~~------~---~~~a~~~~~~~~~d---lil~D~~l~~~~g~~~ 62 (121)
T 2pl1_A 2 RVLVVEDNAL---LRHHLKVQIQDAG--HQVD--DAE------D---AKEADYYLNEHIPD---IAIVDLGLPDEDGLSL 62 (121)
T ss_dssp EEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHHSCCS---EEEECSCCSSSCHHHH
T ss_pred eEEEEeCcHH---HHHHHHHHHhhcC--CEEE--EeC------C---HHHHHHHHhccCCC---EEEEecCCCCCCHHHH
Confidence 5677766653 3445556666777 5542 222 2 33444555666666 6653 456666777
Q ss_pred HHHHHHHhhcCCcEEEe
Q 017815 113 CGYAAASYLRGVSFIQI 129 (365)
Q Consensus 113 ak~vA~~~~~g~p~i~I 129 (365)
.+.+.. ....+|++.+
T Consensus 63 ~~~l~~-~~~~~~ii~~ 78 (121)
T 2pl1_A 63 IRRWRS-NDVSLPILVL 78 (121)
T ss_dssp HHHHHH-TTCCSCEEEE
T ss_pred HHHHHh-cCCCCCEEEE
Confidence 776642 2345677766
No 322
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=23.37 E-value=2.2e+02 Score=20.87 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=43.7
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+...|...| +++. .+. + ..++.+.+.+..+| +||. +.+..-.+
T Consensus 4 ~~Ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~~~~~~~d---lvl~D~~l~~~~g~~ 64 (132)
T 3crn_A 4 KRILIVDDDTA---ILDSTKQILEFEG--YEVE--IAA------T---AGEGLAKIENEFFN---LALFXIKLPDMEGTE 64 (132)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHHSCCS---EEEECSBCSSSBHHH
T ss_pred cEEEEEeCCHH---HHHHHHHHHHHCC--ceEE--EeC------C---HHHHHHHHhcCCCC---EEEEecCCCCCchHH
Confidence 46787777654 3445555666667 6542 233 2 23444555666666 6653 45666678
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+.+.+... ...+|++.+
T Consensus 65 ~~~~l~~~-~~~~~ii~~ 81 (132)
T 3crn_A 65 LLEKAHKL-RPGMKKIMV 81 (132)
T ss_dssp HHHHHHHH-CTTSEEEEE
T ss_pred HHHHHHhh-CCCCcEEEE
Confidence 87766432 346777766
No 323
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=23.37 E-value=2.7e+02 Score=22.46 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=43.7
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+...|...| +++.. .+. + ..++.+.+.+..+| +||. +.+..-++
T Consensus 14 ~~iLivdd~~~---~~~~l~~~L~~~g--~~v~~-~~~------~---~~~al~~~~~~~~d---lvi~D~~~p~~~g~~ 75 (205)
T 1s8n_A 14 RRVLIAEDEAL---IRMDLAEMLREEG--YEIVG-EAG------D---GQEAVELAELHKPD---LVIMDVKMPRRDGID 75 (205)
T ss_dssp CEEEEECSSHH---HHHHHHHHHHHTT--CEEEE-EES------S---HHHHHHHHHHHCCS---EEEEESSCSSSCHHH
T ss_pred ccEEEEECCHH---HHHHHHHHHHHCC--CEEEE-EeC------C---HHHHHHHHhhcCCC---EEEEeCCCCCCChHH
Confidence 57888888764 3445555666677 65421 232 2 33444455666677 6653 45667788
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+... ...|+|.+
T Consensus 76 ~~~~l~~~--~~~pii~l 91 (205)
T 1s8n_A 76 AASEIASK--RIAPIVVL 91 (205)
T ss_dssp HHHHHHHT--TCSCEEEE
T ss_pred HHHHHHhc--CCCCEEEE
Confidence 88877432 23477666
No 324
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=23.23 E-value=3.8e+02 Score=23.46 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhC-CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEE
Q 017815 49 YLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 127 (365)
Q Consensus 49 ~~~~v~~~L~~~-g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i 127 (365)
+.+-+.+.+.+. | +++.+ +.. + .+.+.-.+.++.+.+.++| .||..+.... +....+......++|+|
T Consensus 23 ~~~gi~~~a~~~~g--~~l~i--~~~-~--~~~~~~~~~i~~l~~~~vd---giIi~~~~~~-~~~~~~~~~~~~~iPvV 91 (325)
T 2x7x_A 23 MNDEILREAMFYNG--VSVEI--RSA-G--DDNSKQAEDVHYFMDEGVD---LLIISANEAA-PMTPIVEEAYQKGIPVI 91 (325)
T ss_dssp HHHHHHHHHTTSSS--CEEEE--EEC-T--TCHHHHHHHHHHHHHTTCS---EEEECCSSHH-HHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHcCC--cEEEE--eCC-C--CCHHHHHHHHHHHHHcCCC---EEEEeCCCHH-HHHHHHHHHHHCCCeEE
Confidence 455566677776 7 66533 222 1 2445556667777788888 8887765432 11122222234799999
Q ss_pred Eeccc
Q 017815 128 QIPTT 132 (365)
Q Consensus 128 ~IPTT 132 (365)
.+-+.
T Consensus 92 ~~~~~ 96 (325)
T 2x7x_A 92 LVDRK 96 (325)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98665
No 325
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=23.11 E-value=3e+02 Score=24.81 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=33.3
Q ss_pred ceEEEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 64 VSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 64 i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~-~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
.++.+++.+. .. +.+...+.++.+.+. +++ .||+.+.+....++.. .-..++|+|. |++
T Consensus 47 ~~i~l~~~D~-~~--~~~~~~~~~~~li~~~~V~---~iig~~s~~~~~~~~~---~~~~~iP~i~-~~~ 106 (392)
T 3lkb_A 47 VVFNCVVRDD-QY--NNANTQRFFEEAVDRFKIP---VFLSYATGANLQLKPL---IQELRIPTIP-ASM 106 (392)
T ss_dssp EEEEEEEEEC-TT--CHHHHHHHHHHHHHTTCCS---CEEECCHHHHHHHHHH---HHHHTCCEEE-SCC
T ss_pred eEeEEEEecC-CC--CHHHHHHHHHHHHhhcCcE---EEEeCCcHHHHHHHHH---HHhCCceEEe-ccc
Confidence 3455555443 22 445566666666665 787 9998543333333332 2346899998 443
No 326
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=23.10 E-value=2.2e+02 Score=20.63 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=43.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||.|.... .+.+...|...| +.+. ... + ..+..+.+.+..+| +||. +.+.+-.
T Consensus 3 ~~~ilivdd~~~~---~~~l~~~l~~~~--~~v~--~~~------~---~~~~~~~~~~~~~d---lvi~D~~l~~~~g~ 63 (126)
T 1dbw_A 3 DYTVHIVDDEEPV---RKSLAFMLTMNG--FAVK--MHQ------S---AEAFLAFAPDVRNG---VLVTDLRMPDMSGV 63 (126)
T ss_dssp CCEEEEEESSHHH---HHHHHHHHHHTT--CEEE--EES------C---HHHHHHHGGGCCSE---EEEEECCSTTSCHH
T ss_pred CCEEEEEcCCHHH---HHHHHHHHHhCC--cEEE--EeC------C---HHHHHHHHhcCCCC---EEEEECCCCCCCHH
Confidence 3578888887653 445556666667 5542 222 2 23344445555555 6653 4566777
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++.+.+... ...+|++.+
T Consensus 64 ~~~~~l~~~-~~~~~ii~~ 81 (126)
T 1dbw_A 64 ELLRNLGDL-KINIPSIVI 81 (126)
T ss_dssp HHHHHHHHT-TCCCCEEEE
T ss_pred HHHHHHHhc-CCCCCEEEE
Confidence 888776432 346777766
No 327
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=23.03 E-value=2.6e+02 Score=21.59 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=44.8
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+.+.|.+.+. +.+ +..+. +..++.+.+.+..+| +||. +.+..-++
T Consensus 26 ~~ILivdd~~~---~~~~l~~~L~~~~~-~~~-v~~~~---------~~~~al~~l~~~~~d---lvilD~~l~~~~g~~ 88 (164)
T 3t8y_A 26 IRVLVVDDSAF---MRMVLKDIIDSQPD-MKV-VGFAK---------DGLEAVEKAIELKPD---VITMDIEMPNLNGIE 88 (164)
T ss_dssp EEEEEECSCHH---HHHHHHHHHHTSTT-EEE-EEEES---------SHHHHHHHHHHHCCS---EEEECSSCSSSCHHH
T ss_pred cEEEEEcCCHH---HHHHHHHHHhcCCC-eEE-EEecC---------CHHHHHHHhccCCCC---EEEEeCCCCCCCHHH
Confidence 36777777654 34556666766531 221 11222 334455556666777 7765 57888888
Q ss_pred HHHHHHHHhhcCCcEEEecc
Q 017815 112 MCGYAAASYLRGVSFIQIPT 131 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPT 131 (365)
+.+.+... ...|+|.+-+
T Consensus 89 l~~~lr~~--~~~~ii~~s~ 106 (164)
T 3t8y_A 89 ALKLIMKK--APTRVIMVSS 106 (164)
T ss_dssp HHHHHHHH--SCCEEEEEES
T ss_pred HHHHHHhc--CCceEEEEec
Confidence 88877432 3467666633
No 328
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=22.85 E-value=3.6e+02 Score=24.79 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=52.7
Q ss_pred ccCchHHHHHHHHHHHhhCCCCceEEEEEe-CCCC-CCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHH
Q 017815 42 NNTVAPLYLDKVTDALTRGNPNVSVENVIL-PDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS 119 (365)
Q Consensus 42 d~~~~~~~~~~v~~~L~~~g~~i~v~~~~~-~~~e-~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~ 119 (365)
|..+.....+++.+.+-++| ++-. ++. ..|| +.=|.++-.++++.....++. +|+++|+-++-|+...+..+
T Consensus 41 dg~ID~~~l~~lv~~li~~G--v~Gl-~v~GtTGE~~~Ls~eEr~~vi~~~~~grvp---ViaGvg~~st~eai~la~~A 114 (344)
T 2hmc_A 41 DRTPDFDALVRKGKELIADG--MSAV-VYCGSMGDWPLLTDEQRMEGVERLVKAGIP---VIVGTGAVNTASAVAHAVHA 114 (344)
T ss_dssp TSSBCHHHHHHHHHHHHHTT--CCCE-EESSGGGTGGGSCHHHHHHHHHHHHHTTCC---EEEECCCSSHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcC--CCEE-EeCccCcChhhCCHHHHHHHHHHHhCCCCc---EEEecCCCCHHHHHHHHHHH
Confidence 34454445666666666777 5432 222 2355 345677777777773333455 99999998877776666555
Q ss_pred hhcCCcEEEeccc
Q 017815 120 YLRGVSFIQIPTT 132 (365)
Q Consensus 120 ~~~g~p~i~IPTT 132 (365)
...|..-+.+.+-
T Consensus 115 ~~~Gadavlv~~P 127 (344)
T 2hmc_A 115 QKVGAKGLMVIPR 127 (344)
T ss_dssp HHHTCSEEEECCC
T ss_pred HhcCCCEEEECCC
Confidence 5568877766443
No 329
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.82 E-value=3.9e+02 Score=23.46 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=50.6
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
+++-++.... .+..+.+-+.+.+.+.| +++.+ +.. +.+.+.-.+.++.+.+.++| .||..+....-+
T Consensus 64 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~--~~~---~~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~ 133 (332)
T 2o20_A 64 TTVGVILPTITSTYFAAITRGVDDIASMYK--YNMIL--ANS---DNDVEKEEKVLETFLSKQVD---GIVYMGSSLDEK 133 (332)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTT--CEEEE--EEC---TTCHHHHHHHHHHHHHTTCS---EEEECSSCCCHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcC--CEEEE--EEC---CCChHHHHHHHHHHHhCCCC---EEEEeCCCCCHH
Confidence 3455555321 23336667777788888 66543 222 12445556677778888888 888887533222
Q ss_pred HHHHHHHHhhcCCcEEEeccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTT 132 (365)
..+.+ ...++|+|.+-..
T Consensus 134 ~~~~l---~~~~iPvV~~~~~ 151 (332)
T 2o20_A 134 IRTSL---KNSRTPVVLVGTI 151 (332)
T ss_dssp HHHHH---HHHCCCEEEESCC
T ss_pred HHHHH---HhCCCCEEEEccc
Confidence 22222 2469999998665
No 330
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=22.79 E-value=3.9e+02 Score=23.43 Aligned_cols=87 Identities=6% Similarity=-0.083 Sum_probs=49.6
Q ss_pred ceEEEEEccC---chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcC--CCCcceEEEecCchH
Q 017815 35 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR--LDRRCTFVALGGGVI 109 (365)
Q Consensus 35 ~~~livtd~~---~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~--~dr~~~IIaiGGGsv 109 (365)
+++-++.... .+..+.+-+.+.+.+.| +++.++ .. + .+.+.-.+.++.+.+.+ +| .||..+....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~l~~~--~~-~--~~~~~~~~~i~~l~~~~~~vd---giIi~~~~~~ 75 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVG--LPYVPL--TT-E--GSSEKGIADIRALLQKTGGNL---VLNVDPNDSA 75 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHT--CCEEEE--EC-T--TCHHHHHHHHHHHHHHTTTCE---EEEECCSSHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcC--CEEEEe--cC-C--CCHHHHHHHHHHHHHCCCCCC---EEEEeCCCHH
Confidence 3455555421 22335666777778888 665432 22 1 24455566677777777 88 8887765432
Q ss_pred hhHHHHHHHHhhcCCcEEEeccc
Q 017815 110 GDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+....+......++|+|.+-+.
T Consensus 76 -~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 76 -DARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp -HHHHHHHHHHHHTCEEEEESCC
T ss_pred -HHHHHHHHHHHCCCeEEEECCC
Confidence 1112222223469999999765
No 331
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=22.68 E-value=3.9e+02 Score=23.46 Aligned_cols=73 Identities=7% Similarity=-0.019 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh-HHHHHHHHhhcCCc
Q 017815 47 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVS 125 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D-~ak~vA~~~~~g~p 125 (365)
..+.+.+.+.+.+.| +++.+ +. . +.+.+.-.+.++.+.+.++| .||-.+....-+ +.+. .-..++|
T Consensus 79 ~~~~~gi~~~a~~~g--~~~~~--~~-~--~~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~~~~~~---~~~~~iP 145 (338)
T 3dbi_A 79 SELLFHAARMAEEKG--RQLLL--AD-G--KHSAEEERQAIQYLLDLRCD---AIMIYPRFLSVDEIDDI---IDAHSQP 145 (338)
T ss_dssp HHHHHHHHHHHHHTT--CEEEE--EE-C--TTSHHHHHHHHHHHHHTTCS---EEEECCSSSCHHHHHHH---HHHCSSC
T ss_pred HHHHHHHHHHHHHCC--CEEEE--Ee-C--CCChHHHHHHHHHHHhCCCC---EEEEeCCCCChHHHHHH---HHcCCCC
Confidence 346777778888888 66543 22 2 22455666677888888888 888877543322 2222 2346899
Q ss_pred EEEeccc
Q 017815 126 FIQIPTT 132 (365)
Q Consensus 126 ~i~IPTT 132 (365)
+|.+-..
T Consensus 146 vV~~~~~ 152 (338)
T 3dbi_A 146 IMVLNRR 152 (338)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 9998665
No 332
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=22.60 E-value=1.4e+02 Score=25.83 Aligned_cols=82 Identities=7% Similarity=0.136 Sum_probs=48.1
Q ss_pred eEEEEEcc--CchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHH
Q 017815 36 KVLVVTNN--TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 113 (365)
Q Consensus 36 ~~livtd~--~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~a 113 (365)
++-++... ..+..+.+-+.+.+++.| +++.+ +.. . .+.+.-.+.++.+.+.++| .||..+....-+..
T Consensus 10 ~Igvi~~~~~~~~~~~~~gi~~~~~~~g--~~~~~--~~~-~--~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~~~ 79 (288)
T 2qu7_A 10 IIAFIVPDQNPFFTEVLTEISHECQKHH--LHVAV--ASS-E--ENEDKQQDLIETFVSQNVS---AIILVPVKSKFQMK 79 (288)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHGGGT--CEEEE--EEC-T--TCHHHHHHHHHHHHHTTEE---EEEECCSSSCCCCC
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCC--CEEEE--EeC-C--CCHHHHHHHHHHHHHcCcc---EEEEecCCCChHHH
Confidence 45555543 123335666677778888 66543 322 1 2445556677777777888 88877654321221
Q ss_pred HHHHHHhhcCCcEEEeccc
Q 017815 114 GYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 114 k~vA~~~~~g~p~i~IPTT 132 (365)
+ .. .++|+|.+-+.
T Consensus 80 ~----~l-~~iPvV~~~~~ 93 (288)
T 2qu7_A 80 R----EW-LKIPIMTLDRE 93 (288)
T ss_dssp G----GG-GGSCEEEESCC
T ss_pred H----Hh-cCCCEEEEecc
Confidence 1 12 68999998765
No 333
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=22.44 E-value=4.6e+02 Score=24.10 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=62.5
Q ss_pred ccchhhhhccC--CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 23 SNNCLYYRHVQ--GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 23 ~~~~~l~~~~~--~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
...+.+..+.. .+++.+++-.+....-.+.+.+.|++..+++.+ ...+.-++.|-+.=.++.+.+.+ +| +
T Consensus 157 ~~~edv~~l~~~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~~---~~~ntIC~AT~~RQ~av~~lA~~--vD---~ 228 (328)
T 3szu_A 157 ESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVG---PRKDDICYATTNRQEAVRALAEQ--AE---V 228 (328)
T ss_dssp CSHHHHHHCCCSCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCBC---CSSCSCCHHHHHHHHHHHHHHHH--CS---E
T ss_pred CCHHHHHhCCcCCCCeEEEEEecCCcHHHHHHHHHHHHHhCccccc---CCCCCcCHHHHHHHHHHHHHHHh--CC---E
Confidence 34455555532 257777776665554566677777665422221 11244455555555555544443 67 9
Q ss_pred EEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 101 FVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 101 IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
+|-|||-..-..-+..-.+-..|.|-..|-|.
T Consensus 229 miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~ 260 (328)
T 3szu_A 229 VLVVGSKNSSNSNRLAELAQRMGKRAFLIDDA 260 (328)
T ss_dssp EEEECCTTCHHHHHHHHHHHHTTCEEEEESSG
T ss_pred EEEeCCCCCchHHHHHHHHHHhCCCEEEeCCh
Confidence 99999988888888776665677888888766
No 334
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.40 E-value=1.8e+02 Score=25.02 Aligned_cols=75 Identities=12% Similarity=0.083 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCC
Q 017815 45 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 124 (365)
Q Consensus 45 ~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~ 124 (365)
.+..+.+-+.+.+++.| +++. ++.. .. +.+.-.+.++.+.+.++| .||..+....-+..+.+ ...++
T Consensus 22 ~~~~~~~gi~~~a~~~g--~~~~--~~~~-~~--~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~~~~~l---~~~~i 88 (287)
T 3bbl_A 22 ILDQFLSSMVREAGAVN--YFVL--PFPF-SE--DRSQIDIYRDLIRSGNVD---GFVLSSINYNDPRVQFL---LKQKF 88 (287)
T ss_dssp THHHHHHHHHHHHHHTT--CEEE--ECCC-CS--STTCCHHHHHHHHTTCCS---EEEECSCCTTCHHHHHH---HHTTC
T ss_pred hHHHHHHHHHHHHHHcC--CEEE--EEeC-CC--chHHHHHHHHHHHcCCCC---EEEEeecCCCcHHHHHH---HhcCC
Confidence 34457777888888888 6653 2332 11 112223445566677888 88887754322333322 24699
Q ss_pred cEEEeccc
Q 017815 125 SFIQIPTT 132 (365)
Q Consensus 125 p~i~IPTT 132 (365)
|+|.+-+.
T Consensus 89 PvV~~~~~ 96 (287)
T 3bbl_A 89 PFVAFGRS 96 (287)
T ss_dssp CEEEESCC
T ss_pred CEEEECCc
Confidence 99998665
No 335
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=22.21 E-value=3.5e+02 Score=24.45 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=19.4
Q ss_pred cceEEEecCchHhh-HHHHHHHHhhcCCcEEEeccc
Q 017815 98 RCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 98 ~~~IIaiGGGsv~D-~ak~vA~~~~~g~p~i~IPTT 132 (365)
+.+|+++|||..+= ++++.. .....++++.|-..
T Consensus 179 d~vv~pvG~GG~~aGi~~~~k-~~~p~~~vigVe~~ 213 (334)
T 3tbh_A 179 DCFIAGVGTGGTLTGVARALK-KMGSHARIVAVEPT 213 (334)
T ss_dssp SEEEEECSSSHHHHHHHHHHH-HTTCCCEEEEEEET
T ss_pred CEEEeccCCcHhHHHHHHHHH-HhCCCCEEEEEeeC
Confidence 45889999987642 222221 12345677777444
No 336
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=22.13 E-value=1.7e+02 Score=23.73 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=44.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~ 110 (365)
..+++||-|... ..+.+...|...| +++. .+. + ..+..+.+.+..+| +||. +.+..-+
T Consensus 4 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~~~~~~~d---lvl~D~~lp~~~g~ 64 (208)
T 1yio_A 4 KPTVFVVDDDMS---VREGLRNLLRSAG--FEVE--TFD------C---ASTFLEHRRPEQHG---CLVLDMRMPGMSGI 64 (208)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHTTT--CEEE--EES------S---HHHHHHHCCTTSCE---EEEEESCCSSSCHH
T ss_pred CCEEEEEcCCHH---HHHHHHHHHHhCC--ceEE--EcC------C---HHHHHHhhhccCCC---EEEEeCCCCCCCHH
Confidence 357888877754 3455566677777 6543 232 2 23344444445555 6652 4566778
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++++.+... ..++|++.+
T Consensus 65 ~~~~~l~~~-~~~~~ii~l 82 (208)
T 1yio_A 65 ELQEQLTAI-SDGIPIVFI 82 (208)
T ss_dssp HHHHHHHHT-TCCCCEEEE
T ss_pred HHHHHHHhc-CCCCCEEEE
Confidence 888877532 356788776
No 337
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=22.06 E-value=1.3e+02 Score=25.25 Aligned_cols=90 Identities=10% Similarity=0.175 Sum_probs=51.0
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeC---CCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILP---DGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~---~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~D 111 (365)
-|+.|=+|..-++ +.+.|.+.|++.| ...++.-+. ..++..-.+...++.+.+.+..+||. |+-=|-|.=+-
T Consensus 30 MkIaIgsDHaG~~-LK~~i~~~L~~~G--~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~ge~d~G--IliCGTGiG~s 104 (184)
T 3sgw_A 30 LRLAIACDDAGVS-YKEALKAHLSDNP--LVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRA--LMICGTGLGVA 104 (184)
T ss_dssp EEEEEEECGGGHH-HHHHHHHHHTTCT--TEEEEEECSCCSTTCCCCHHHHHHHHHHHHHTTSCSEE--EEEESSSHHHH
T ss_pred cEEEEEECchhHH-HHHHHHHHHHhCC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCcEE--EEEcCCcHHHh
Confidence 3688888887665 6889999999887 322233332 12222233456667777777777753 33333333222
Q ss_pred HHHHHHHHhhcCCcEEEecccc
Q 017815 112 MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+ |+--..|++...+-...
T Consensus 105 I----aANKv~GIRAAlc~d~~ 122 (184)
T 3sgw_A 105 I----SANKVPGIRAVTAHDTF 122 (184)
T ss_dssp H----HHHTSTTCCEEECCSHH
T ss_pred h----hhhcCCCeEEEEeCCHH
Confidence 2 22234688877765543
No 338
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=21.92 E-value=1.5e+02 Score=27.34 Aligned_cols=71 Identities=6% Similarity=0.022 Sum_probs=45.9
Q ss_pred ccCCceEEEEEccCchH----HHHHHHHHHHhhCCCCceEEEEEeCCCC------CCCCHHHHHHHHHHHHHcCCCCcce
Q 017815 31 HVQGKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGE------NYKNMDTLMKVFDKAIESRLDRRCT 100 (365)
Q Consensus 31 ~~~~~~~livtd~~~~~----~~~~~v~~~L~~~g~~i~v~~~~~~~~e------~~~~~~~v~~~~~~~~~~~~dr~~~ 100 (365)
+..|.++-||+=.+-.. .-.++-.+.|++.| ++|.. -+... .....+-++++.+.+.+-.++ .
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G--~~v~~--~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~---a 82 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKG--FHILE--GSLTGRYDYYRSGSIQERAKELNALIRNPNVS---C 82 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTT--CEEEE--CTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEE---E
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCC--CEEEE--cccccccccccCCCHHHHHHHHHHHhhCCCCC---E
Confidence 33478888887665322 24566677888899 77642 11111 234556788888888776666 8
Q ss_pred EEEecCch
Q 017815 101 FVALGGGV 108 (365)
Q Consensus 101 IIaiGGGs 108 (365)
|++.-||-
T Consensus 83 I~~~rGG~ 90 (336)
T 3sr3_A 83 IMSTIGGM 90 (336)
T ss_dssp EEESCCCS
T ss_pred EEEccccc
Confidence 98888874
No 339
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=21.91 E-value=1.3e+02 Score=22.70 Aligned_cols=30 Identities=33% Similarity=0.232 Sum_probs=24.2
Q ss_pred CceEEEEEccCchHH--HHHHHHHHHhhCCCCce
Q 017815 34 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVS 65 (365)
Q Consensus 34 ~~~~livtd~~~~~~--~~~~v~~~L~~~g~~i~ 65 (365)
-+|++++++.++.-. ...++++.+++.| ++
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~g--i~ 49 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLG--VS 49 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTT--CC
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcC--CC
Confidence 478999999997655 4559999999988 65
No 340
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=21.90 E-value=2.9e+02 Score=21.64 Aligned_cols=66 Identities=8% Similarity=0.043 Sum_probs=36.8
Q ss_pred CceEEEEEccCch-------HHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCH-HHHHHHHHHHHHcCCCCcceEEEec
Q 017815 34 GKKVLVVTNNTVA-------PLYLDKVTDALTRGNPNVSVENVILPDGENYKNM-DTLMKVFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 34 ~~~~livtd~~~~-------~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~-~~v~~~~~~~~~~~~dr~~~IIaiG 105 (365)
+++++++-|..+. ..|...+.+.|...+ ..+.+. ..+....+. +.+.++-..+...++| +||-..
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~--~~~~v~--n~g~~G~~~~~~~~~~~~~~~~~~pd---~vvi~~ 74 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQ--SDIVLI--NASISGETSGGALRRLDALLEQYEPT---HVLIEL 74 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTT--CCEEEE--ECCCTTCCHHHHHHHHHHHHHHHCCS---EEEEEC
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcC--CcEEEE--ECCcCCccHHHHHHHHHHHHhhcCCC---EEEEEe
Confidence 4677777777654 247888888888766 344332 233333333 4444554445555666 544444
Q ss_pred C
Q 017815 106 G 106 (365)
Q Consensus 106 G 106 (365)
|
T Consensus 75 G 75 (185)
T 3hp4_A 75 G 75 (185)
T ss_dssp C
T ss_pred e
Confidence 3
No 341
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=21.84 E-value=1.9e+02 Score=27.47 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhCCCCceEEEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchHh--hHHHHHH
Q 017815 47 PLYLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG--DMCGYAA 117 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i~v~~~-~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv~--D~ak~vA 117 (365)
+.-...+...|++.| +++..+ ++++ +.+.+.+.++.+.+ ++| +||--||=|+. |.++-+-
T Consensus 203 dsn~~~L~~~l~~~G--~~v~~~~iv~D-----d~~~i~~al~~a~~-~~D---lvittGG~s~g~~D~t~~al 265 (411)
T 1g8l_A 203 DTNRLAVHLMLEQLG--CEVINLGIIRD-----DPHALRAAFIEADS-QAD---VVISSGGVSVGEADYTKTIL 265 (411)
T ss_dssp CCHHHHHHHHHHHTT--CEEEEEEEECS-----CHHHHHHHHHHHHH-HCS---EEEECSSSCSSSCSHHHHHH
T ss_pred cCchHHHHHHHHHCC--CEEEEEEEeCC-----CHHHHHHHHHHHhh-cCC---EEEECCCCCCCCcccHHHHH
Confidence 345666788888888 665433 3343 45677776666654 456 99999998776 8887664
No 342
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.70 E-value=2.3e+02 Score=27.60 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecC-chHhhHHHHHHHHhhcCCcEEEeccccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTTVM 134 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGG-Gsv~D~ak~vA~~~~~g~p~i~IPTTl~ 134 (365)
|.++.+.++.+.+++.++. |||-|| .+.-|++|+++ .|...+.+-|.+.
T Consensus 318 p~~~~i~~v~~~~~~~~iP----VIa~GGI~~~~di~kala----~GAd~V~iGs~f~ 367 (496)
T 4fxs_A 318 PQITAIADAAGVANEYGIP----VIADGGIRFSGDISKAIA----AGASCVMVGSMFA 367 (496)
T ss_dssp CHHHHHHHHHHHHGGGTCC----EEEESCCCSHHHHHHHHH----TTCSEEEESTTTT
T ss_pred cHHHHHHHHHHHhccCCCe----EEEeCCCCCHHHHHHHHH----cCCCeEEecHHHh
Confidence 5667777888777666665 777766 46888988764 4888999988873
No 343
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=21.67 E-value=3.3e+02 Score=22.24 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=43.7
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
.+++||.|... ..+.+...|...| +++. .+. + ..++.+.+.+..+| +||- +.+..-++
T Consensus 5 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~~~~~~~d---lvllD~~l~~~~g~~ 65 (230)
T 2oqr_A 5 TSVLIVEDEES---LADPLAFLLRKEG--FEAT--VVT------D---GPAALAEFDRAGAD---IVLLDLMLPGMSGTD 65 (230)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EEC------S---HHHHHHHHHHHCCS---EEEEESSCSSSCHHH
T ss_pred CeEEEEeCCHH---HHHHHHHHHHHCC--CEEE--EEC------C---HHHHHHHHhccCCC---EEEEECCCCCCCHHH
Confidence 47888887764 3445556666667 6543 222 2 23344455556666 6653 35666778
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+++.+.. ...+|++.+
T Consensus 66 ~~~~l~~--~~~~~ii~l 81 (230)
T 2oqr_A 66 VCKQLRA--RSSVPVIMV 81 (230)
T ss_dssp HHHHHHH--HCSCSEEEE
T ss_pred HHHHHHc--CCCCCEEEE
Confidence 8877743 256777766
No 344
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=21.59 E-value=3.1e+02 Score=23.91 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=42.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCch-Hhh-
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IGD- 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGs-v~D- 111 (365)
.++++||-...... ...+.+.|++.| +++.++....+++.|. + -.++| .||--||.. +.|
T Consensus 3 ~~~vliiqh~~~e~--~~~i~~~l~~~G--~~v~v~~~~~~~~~p~--~---------~~~~d---~lIl~GGp~~~~d~ 64 (250)
T 3m3p_A 3 LKPVMIIQFSASEG--PGHFGDFLAGEH--IPFQVLRMDRSDPLPA--E---------IRDCS---GLAMMGGPMSANDD 64 (250)
T ss_dssp CCCEEEEESSSSCC--CHHHHHHHHHTT--CCEEEEEGGGTCCCCS--C---------GGGSS---EEEECCCSSCTTSC
T ss_pred CCeEEEEECCCCCC--HHHHHHHHHHCC--CeEEEEeccCCCcCcC--c---------cccCC---EEEECCCCCccccc
Confidence 46777775543222 223344566777 6666555554443331 0 01334 777777664 222
Q ss_pred ------HHHHHHHHhhcCCcEEEecccc
Q 017815 112 ------MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 112 ------~ak~vA~~~~~g~p~i~IPTTl 133 (365)
...++......++|+.-|+-..
T Consensus 65 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 92 (250)
T 3m3p_A 65 LPWMPTLLALIRDAVAQRVPVIGHCLGG 92 (250)
T ss_dssp CTTHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 2233333345688888887663
No 345
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=21.56 E-value=3.3e+02 Score=23.94 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=47.6
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-----CCCHHHHHHHHHHHHHcCCCCcceEEEe-cCc
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-----YKNMDTLMKVFDKAIESRLDRRCTFVAL-GGG 107 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~-----~~~~~~v~~~~~~~~~~~~dr~~~IIai-GGG 107 (365)
.+|+-|++-.. ....+...+.|.+.| +++....-.+... .-+.+.+.++++.+.+.++| .||-= .-+
T Consensus 146 ~~rvgvltp~~--~~~~~~~~~~l~~~G--i~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gad---aIvLg~CT~ 218 (273)
T 2xed_A 146 AQRVALVTPYM--RPLAEKVVAYLEAEG--FTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVD---ALVISCAVQ 218 (273)
T ss_dssp CCEEEEEECSC--HHHHHHHHHHHHHTT--CEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCS---EEEEESSSS
T ss_pred CCeEEEEcCCh--hhhHHHHHHHHHHCC--CEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCC---EEEEcCCCC
Confidence 58999998322 334556677788888 7764333222211 12345566666665444555 54433 333
Q ss_pred h-HhhHHHHHHHHhhcCCcEEEeccc
Q 017815 108 V-IGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 108 s-v~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
- ..++...+.. ..|+|++.-.+.
T Consensus 219 l~~~~~~~~le~--~lg~PVids~~a 242 (273)
T 2xed_A 219 MPSLPLVETAER--EFGIPVLSAATA 242 (273)
T ss_dssp SCCTTHHHHHHH--HHSSCEEEHHHH
T ss_pred cchHHhHHHHHH--HhCCCEEcHHHH
Confidence 3 3355544422 237887654444
No 346
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=21.48 E-value=2.7e+02 Score=21.03 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=44.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCcceEEE---ecCchH
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRL-DRRCTFVA---LGGGVI 109 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~-dr~~~IIa---iGGGsv 109 (365)
..+++||.|... ..+.+.+.|+. | +++. .+. + ..++.+.+.+... | +||. +.+..-
T Consensus 4 ~~~ILivdd~~~---~~~~l~~~L~~-~--~~v~--~~~------~---~~~a~~~l~~~~~~d---lvi~D~~l~~~~g 63 (151)
T 3kcn_A 4 NERILLVDDDYS---LLNTLKRNLSF-D--FEVT--TCE------S---GPEALACIKKSDPFS---VIMVDMRMPGMEG 63 (151)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHTT-T--SEEE--EES------S---HHHHHHHHHHSCCCS---EEEEESCCSSSCH
T ss_pred CCeEEEEeCCHH---HHHHHHHHhcc-C--ceEE--EeC------C---HHHHHHHHHcCCCCC---EEEEeCCCCCCcH
Confidence 457888887754 34455556654 6 5543 232 2 3444455565543 6 6664 467788
Q ss_pred hhHHHHHHHHhhcCCcEEEe
Q 017815 110 GDMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 110 ~D~ak~vA~~~~~g~p~i~I 129 (365)
.++.+.+... ...+|++.+
T Consensus 64 ~~~~~~l~~~-~~~~~ii~~ 82 (151)
T 3kcn_A 64 TEVIQKARLI-SPNSVYLML 82 (151)
T ss_dssp HHHHHHHHHH-CSSCEEEEE
T ss_pred HHHHHHHHhc-CCCcEEEEE
Confidence 8888877532 356777666
No 347
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=21.37 E-value=2.5e+02 Score=20.63 Aligned_cols=75 Identities=13% Similarity=-0.092 Sum_probs=43.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEE---ecCchHhh
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 111 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIa---iGGGsv~D 111 (365)
-|++||.|... ..+.+.+.|.+.| +.+. .+. + ..++.+.+.+..+| +||. +.+..-.+
T Consensus 8 ~~ilivdd~~~---~~~~l~~~L~~~~--~~v~--~~~------~---~~~a~~~l~~~~~d---lvi~d~~l~~~~g~~ 68 (137)
T 3hdg_A 8 LKILIVEDDTD---AREWLSTIISNHF--PEVW--SAG------D---GEEGERLFGLHAPD---VIITDIRMPKLGGLE 68 (137)
T ss_dssp CCEEEECSCHH---HHHHHHHHHHTTC--SCEE--EES------S---HHHHHHHHHHHCCS---EEEECSSCSSSCHHH
T ss_pred cEEEEEeCCHH---HHHHHHHHHHhcC--cEEE--EEC------C---HHHHHHHHhccCCC---EEEEeCCCCCCCHHH
Confidence 47888887754 3445566666666 4442 222 2 33445555666777 6654 35667778
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 017815 112 MCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 112 ~ak~vA~~~~~g~p~i~I 129 (365)
+.+.+... ...+|++.+
T Consensus 69 ~~~~l~~~-~~~~~ii~~ 85 (137)
T 3hdg_A 69 MLDRIKAG-GAKPYVIVI 85 (137)
T ss_dssp HHHHHHHT-TCCCEEEEC
T ss_pred HHHHHHhc-CCCCcEEEE
Confidence 88776432 245666555
No 348
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=21.14 E-value=1.9e+02 Score=21.43 Aligned_cols=58 Identities=7% Similarity=-0.045 Sum_probs=32.8
Q ss_pred CccceecccccccccceeeecccchhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEE
Q 017815 2 TPKALLYKDRFFGNSDTLLLISNNCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVE 67 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~ 67 (365)
++...+--.+.-+|.+++-.. +.++++..|..+.|++|.... .+-|.+.+++.| .++.
T Consensus 24 ~~~~~LD~rGl~CP~Pvl~tk---kaL~~l~~Ge~L~Vl~dd~~a---~~dI~~~~~~~G--~~v~ 81 (98)
T 1jdq_A 24 QVTKTLDVRGEVCPVPDVETK---RALQNMKPGEILEVWIDYPMS---KERIPETVKKLG--HEVL 81 (98)
T ss_dssp CCCEEEECSSCCSSHHHHHHH---HHHHTCCTTCEEEEEESSCTH---HHHHHHHHHHSS--CCEE
T ss_pred cCCEEEeCCCCCCCHHHHHHH---HHHHhCCCCCEEEEEECCccH---HHHHHHHHHHCC--CEEE
Confidence 333445566667776666332 344555446667666666542 345566666777 5543
No 349
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=21.09 E-value=3e+02 Score=21.63 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=33.6
Q ss_pred EEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEec
Q 017815 37 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 105 (365)
Q Consensus 37 ~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiG 105 (365)
++.|++. ...|.+.|.+.|...| +.+.+. +.. +-+.+..-+..+...++. +++-||
T Consensus 13 IlpVs~~--~~~YA~~V~~~L~~~G--iRvevD-~~r-----~~e~Lg~kIR~a~~~kvP---y~lVVG 68 (130)
T 1v95_A 13 VIVVNKQ--TKDYAESVGRKVRDLG--MVVDLI-FLN-----TEVSLSQALEDVSRGGSP---FAIVIT 68 (130)
T ss_dssp EEESSSG--GGHHHHHHHHHHHTTT--CCEEEE-ECT-----TSSCHHHHHHHHHHHTCS---EEEEEC
T ss_pred EEEeCcc--hHHHHHHHHHHHHHCC--CEEEEe-cCC-----CCCcHHHHHHHHHHcCCC---EEEEEe
Confidence 4444443 3348999999999998 776542 221 013455555555556666 666666
No 350
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=20.99 E-value=2.9e+02 Score=26.72 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCcceEEEecCc-hHhhHHHHHHHHhhcCCcEEEecccc
Q 017815 78 KNMDTLMKVFDKAIESRLDRRCTFVALGGG-VIGDMCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 78 ~~~~~v~~~~~~~~~~~~dr~~~IIaiGGG-sv~D~ak~vA~~~~~g~p~i~IPTTl 133 (365)
|+++.+.++.+.+++.++. |||-||= +.-|++|+++ .|...+.|-|.+
T Consensus 316 p~~~~l~~v~~~~~~~~iP----VIa~GGI~~~~di~kal~----~GAd~V~vGs~~ 364 (490)
T 4avf_A 316 PQISAIANVAAALEGTGVP----LIADGGIRFSGDLAKAMV----AGAYCVMMGSMF 364 (490)
T ss_dssp CHHHHHHHHHHHHTTTTCC----EEEESCCCSHHHHHHHHH----HTCSEEEECTTT
T ss_pred cHHHHHHHHHHHhccCCCc----EEEeCCCCCHHHHHHHHH----cCCCeeeecHHH
Confidence 5667777777776666665 8888876 6889998775 388899998886
No 351
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=20.92 E-value=2.6e+02 Score=23.43 Aligned_cols=75 Identities=5% Similarity=0.038 Sum_probs=43.8
Q ss_pred chhhhhccCCceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEe
Q 017815 25 NCLYYRHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 104 (365)
Q Consensus 25 ~~~l~~~~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIai 104 (365)
-.+.+.+. .++++||-|+...+.+.+.+.+.-...| +++.++ ++++.++.+.+...++..++|-+
T Consensus 40 t~W~k~~~-~~~IiVvnD~vA~D~~~k~~lkmA~P~g--vk~~i~------------sve~ai~~~~~~~~~~~~v~il~ 104 (187)
T 3lfj_A 40 TRWMKGFP-EASIVIIDDELAVDEFMKNIYTMAAPPG--VKVKVF------------GVDAALKEWSQKTSVEEKVFLLF 104 (187)
T ss_dssp HHHHTTCT-TCEEEEECHHHHHCHHHHHHHHHTSCTT--CCEEEE------------CHHHHHHHHHSBCSSCEEEEEEE
T ss_pred heeccccC-CCEEEEECccccCCHHHHHHHHHhccCC--CeEEEE------------EHHHHHHHHhCCccCCceEEEEE
Confidence 44455553 5677777666554456666655444456 665432 34555555555554544566666
Q ss_pred cCchHhhHHHHH
Q 017815 105 GGGVIGDMCGYA 116 (365)
Q Consensus 105 GGGsv~D~ak~v 116 (365)
. ++.|+-+.+
T Consensus 105 k--~p~d~~~lv 114 (187)
T 3lfj_A 105 K--NIDTCKRVM 114 (187)
T ss_dssp S--SHHHHHHHH
T ss_pred C--CHHHHHHHH
Confidence 5 888888865
No 352
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=20.82 E-value=3.2e+02 Score=23.60 Aligned_cols=71 Identities=3% Similarity=0.019 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH--hhHHHHHHHHhhcCCcE
Q 017815 49 YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI--GDMCGYAAASYLRGVSF 126 (365)
Q Consensus 49 ~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv--~D~ak~vA~~~~~g~p~ 126 (365)
+.+-+.+.+.+.| +++.+ +.. . .+.+.-.+.++.+.+.++| .||..+.... -+..+. ....++|+
T Consensus 20 ~~~gi~~~a~~~g--~~l~~--~~~-~--~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~~~~~~~~---~~~~~iPv 86 (306)
T 2vk2_A 20 ETNVAKSEAEKRG--ITLKI--ADG-Q--QKQENQIKAVRSFVAQGVD---AIFIAPVVATGWEPVLKE---AKDAEIPV 86 (306)
T ss_dssp HHHHHHHHHHHHT--CEEEE--EEC-T--TCHHHHHHHHHHHHHHTCS---EEEECCSSSSSCHHHHHH---HHHTTCCE
T ss_pred HHHHHHHHHHHcC--CEEEE--eCC-C--CCHHHHHHHHHHHHHcCCC---EEEEeCCChhhHHHHHHH---HHHCCCCE
Confidence 5566677778888 66533 322 1 2445556677777788888 8887765432 123332 23469999
Q ss_pred EEeccc
Q 017815 127 IQIPTT 132 (365)
Q Consensus 127 i~IPTT 132 (365)
|.+-..
T Consensus 87 V~~~~~ 92 (306)
T 2vk2_A 87 FLLDRS 92 (306)
T ss_dssp EEESSC
T ss_pred EEecCC
Confidence 998655
No 353
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=20.70 E-value=3.1e+02 Score=21.47 Aligned_cols=102 Identities=17% Similarity=0.075 Sum_probs=58.2
Q ss_pred ecccchhhhhcc-CCceEEEEEccCch------H----HHHHHHHHHHhhCCCCceEEEEEe-----CC-CCCCCCHHHH
Q 017815 21 LISNNCLYYRHV-QGKKVLVVTNNTVA------P----LYLDKVTDALTRGNPNVSVENVIL-----PD-GENYKNMDTL 83 (365)
Q Consensus 21 ~~~~~~~l~~~~-~~~~~livtd~~~~------~----~~~~~v~~~L~~~g~~i~v~~~~~-----~~-~e~~~~~~~v 83 (365)
-++..+.|+.+. .+-++.|+|+.... . ...+.+...|+..|..++. ++.. +. +..-|..+.+
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~KP~~~~~ 107 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDA-IFMCPHGPDDGCACRKPLPGMY 107 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCE-EEEECCCTTSCCSSSTTSSHHH
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeE-EEEcCCCCCCCCCCCCCCHHHH
Confidence 345566666653 26789999998631 1 1224455556555421332 1211 11 1234566777
Q ss_pred HHHHHHHHHcCCCCcceEEEecCchHhhHHHHHHHHhhcCCcEEEeccc
Q 017815 84 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 132 (365)
Q Consensus 84 ~~~~~~~~~~~~dr~~~IIaiGGGsv~D~ak~vA~~~~~g~p~i~IPTT 132 (365)
..+++.+ |++.. -++.||-+. .|+..+. ..|++.+.|.+.
T Consensus 108 ~~~~~~~---~~~~~-~~~~vGD~~-~Di~~a~----~aG~~~i~v~~g 147 (179)
T 3l8h_A 108 RDIARRY---DVDLA-GVPAVGDSL-RDLQAAA----QAGCAPWLVQTG 147 (179)
T ss_dssp HHHHHHH---TCCCT-TCEEEESSH-HHHHHHH----HHTCEEEEESTT
T ss_pred HHHHHHc---CCCHH-HEEEECCCH-HHHHHHH----HCCCcEEEECCC
Confidence 7776554 55543 367799966 8987443 358888888765
No 354
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=20.69 E-value=2.7e+02 Score=27.17 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=50.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhh--------CCCCc-----eEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceE
Q 017815 35 KKVLVVTNNTVAPLYLDKVTDALTR--------GNPNV-----SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 101 (365)
Q Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~--------~g~~i-----~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~I 101 (365)
.+..|=-|.+-...+.+++++.|.+ .| + .+. +++.++- +.+.+.++++.+++.|..-+.++
T Consensus 306 ~~lgVR~DSGD~~~~~~~vr~~Ld~~fG~~~n~~G--~kvl~~~~~-Ii~Sd~L---de~~~~~ii~~l~~~G~~~d~v~ 379 (484)
T 3dhf_A 306 APLIIRPDSGNPLDTVLKVLEILGKKFPVTENSKG--YKLLPPYLR-VIQGDGV---DINTLQEIVEGMKQKMWSIENIA 379 (484)
T ss_dssp SCEEEECCSSCHHHHHHHHHHHHHHHSCCEECTTS--CEECCTTEE-EEECSSC---SHHHHHHHHHHHHHTTBCGGGEE
T ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhCCcccccc--cccCCCCEE-EEEcCCC---CHHHHHHHHHHHHhCCCCcccce
Confidence 3455555666555588889999987 66 5 232 3444432 78899999999999887655578
Q ss_pred EEecCchHhhH
Q 017815 102 VALGGGVIGDM 112 (365)
Q Consensus 102 IaiGGGsv~D~ 112 (365)
.|||+..+.|.
T Consensus 380 fGvGT~L~~~~ 390 (484)
T 3dhf_A 380 FGSGGGLLQKL 390 (484)
T ss_dssp EEESHHHHTSC
T ss_pred EcccCccccCC
Confidence 99997776554
No 355
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=20.61 E-value=2.8e+02 Score=21.25 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCCCc-eEEEEEeCCCCCCCCHHHHHHHHHH-HHHcCCCCcceEEEecCc--hH-----hhHHHHHHHHh
Q 017815 50 LDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDK-AIESRLDRRCTFVALGGG--VI-----GDMCGYAAASY 120 (365)
Q Consensus 50 ~~~v~~~L~~~g~~i-~v~~~~~~~~e~~~~~~~v~~~~~~-~~~~~~dr~~~IIaiGGG--sv-----~D~ak~vA~~~ 120 (365)
.+++.+.+.+.| + .+...+..+|. -.+.+.+. +.+.++| +|.+|.- +. ..++..+ ..
T Consensus 81 l~~~~~~~~~~g--~~~~~~~v~~~g~------~~~~I~~~~a~~~~~D----lIV~G~~g~~~~~~~~Gs~~~~v--l~ 146 (156)
T 3fg9_A 81 VAEYVQLAEQRG--VNQVEPLVYEGGD------VDDVILEQVIPEFKPD----LLVTGADTEFPHSKIAGAIGPRL--AR 146 (156)
T ss_dssp HHHHHHHHHHHT--CSSEEEEEEECSC------HHHHHHHTHHHHHCCS----EEEEETTCCCTTSSSCSCHHHHH--HH
T ss_pred HHHHHHHHHHcC--CCceEEEEEeCCC------HHHHHHHHHHHhcCCC----EEEECCCCCCccceeecchHHHH--HH
Confidence 344444556666 5 24444433243 34666676 6778888 4445531 11 1223323 23
Q ss_pred hcCCcEEEec
Q 017815 121 LRGVSFIQIP 130 (365)
Q Consensus 121 ~~g~p~i~IP 130 (365)
....|+..||
T Consensus 147 ~a~~PVlvV~ 156 (156)
T 3fg9_A 147 KAPISVIVVR 156 (156)
T ss_dssp HCSSEEEEEC
T ss_pred hCCCCEEEeC
Confidence 4567777665
No 356
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=20.50 E-value=2.6e+02 Score=21.11 Aligned_cols=75 Identities=12% Similarity=-0.039 Sum_probs=38.6
Q ss_pred eEEEEEccCchHHHHHHHHHHHhhC-CCCceEEEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCCcceEEE---ecCchHh
Q 017815 36 KVLVVTNNTVAPLYLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVA---LGGGVIG 110 (365)
Q Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~-g~~i~v~~~~~~~~e~~~~~~~v~~~~~~~~~-~~~dr~~~IIa---iGGGsv~ 110 (365)
+++||.|... ..+.+...|.+. | +. .+..+. +..++.+.+.+ ..+| +||. +.+...+
T Consensus 5 ~iLivdd~~~---~~~~l~~~L~~~~g--~~-~v~~~~---------~~~~a~~~l~~~~~~d---lvi~d~~l~~~~g~ 66 (154)
T 2qsj_A 5 VVLIVDDHHL---IRAGAKNLLEGAFS--GM-RVEGAE---------TVSDALAFLEADNTVD---LILLDVNLPDAEAI 66 (154)
T ss_dssp EEEEECSCHH---HHHHHHHHHHHHCT--TE-EEEEES---------SHHHHHHHHHTTCCCS---EEEECC------CH
T ss_pred EEEEEcCCHH---HHHHHHHHHHhCCC--ce-EEEEec---------CHHHHHHHHhccCCCC---EEEEeCCCCCCchH
Confidence 6777777654 344555556554 5 42 122222 34445555566 5666 6653 3555667
Q ss_pred hHHHHHHHHhhcCCcEEEe
Q 017815 111 DMCGYAAASYLRGVSFIQI 129 (365)
Q Consensus 111 D~ak~vA~~~~~g~p~i~I 129 (365)
++.+.+... ...+|+|.+
T Consensus 67 ~~~~~l~~~-~~~~~ii~l 84 (154)
T 2qsj_A 67 DGLVRLKRF-DPSNAVALI 84 (154)
T ss_dssp HHHHHHHHH-CTTSEEEEC
T ss_pred HHHHHHHHh-CCCCeEEEE
Confidence 777776433 346777766
No 357
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=20.45 E-value=45 Score=34.39 Aligned_cols=97 Identities=7% Similarity=-0.028 Sum_probs=54.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCCCHHHHHHHHH-HHHHcCCCCcceEEEecC-chHhh
Q 017815 34 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD-KAIESRLDRRCTFVALGG-GVIGD 111 (365)
Q Consensus 34 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~i~v~~~~~~~~e~~~~~~~v~~~~~-~~~~~~~dr~~~IIaiGG-Gsv~D 111 (365)
++++.|+..+++...-.....+.|..+| +++.++....+ +.++...+.-..+ .+.+...+.-|.||-.|| +..-+
T Consensus 534 ~rkVaILl~dGfe~~El~~p~dvL~~AG--~~V~ivS~~gg-~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~ 610 (715)
T 1sy7_A 534 SRRVAIIIADGYDNVAYDAAYAAISANQ--AIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAET 610 (715)
T ss_dssp TCEEEEECCTTBCHHHHHHHHHHHHHTT--CEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHhcC--CEEEEEECCCC-ceecCCCceEecccccccCCcccCCEEEEcCCcccHhh
Confidence 5688888877776654555677788888 77765543322 1111100000000 000111112348888888 44432
Q ss_pred ------HHHHHHHHhhcCCcEEEecccc
Q 017815 112 ------MCGYAAASYLRGVSFIQIPTTV 133 (365)
Q Consensus 112 ------~ak~vA~~~~~g~p~i~IPTTl 133 (365)
+..++...+..+.++.+|++..
T Consensus 611 l~~~~~l~~~Lr~~~~~gK~IaAIC~G~ 638 (715)
T 1sy7_A 611 LSKNGRALHWIREAFGHLKAIGATGEAV 638 (715)
T ss_dssp HHTCHHHHHHHHHHHHTTCEEEEETTHH
T ss_pred hccCHHHHHHHHHHHhCCCEEEEECHHH
Confidence 4556666678899999999874
No 358
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=20.42 E-value=4.1e+02 Score=22.74 Aligned_cols=73 Identities=4% Similarity=-0.027 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCCCCc-eEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCcceEEEecCchH--hhHHHHHHHHhhcC
Q 017815 47 PLYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI--GDMCGYAAASYLRG 123 (365)
Q Consensus 47 ~~~~~~v~~~L~~~g~~i-~v~~~~~~~~e~~~~~~~v~~~~~~~~~~~~dr~~~IIaiGGGsv--~D~ak~vA~~~~~g 123 (365)
..+.+-+.+.+++.| + ++. .+.. +.+.+.-.+.++.+...++| .||-.+.... -+..+. ....+
T Consensus 18 ~~~~~gi~~~a~~~g--~~~~~--~~~~---~~~~~~~~~~~~~~~~~~vd---giii~~~~~~~~~~~~~~---~~~~~ 84 (309)
T 2fvy_A 18 SVVRKAIEQDAKAAP--DVQLL--MNDS---QNDQSKQNDQIDVLLAKGVK---ALAINLVDPAAAGTVIEK---ARGQN 84 (309)
T ss_dssp HHHHHHHHHHHHTCT--TEEEE--EEEC---TTCHHHHHHHHHHHHHTTCS---EEEECCSSGGGHHHHHHH---HHTTT
T ss_pred HHHHHHHHHHHHhcC--CeEEE--EecC---CCCHHHHHHHHHHHHHcCCC---EEEEeCCCcchhHHHHHH---HHHCC
Confidence 346667777788888 6 543 2322 12455666777788888888 8887764432 123332 23479
Q ss_pred CcEEEeccc
Q 017815 124 VSFIQIPTT 132 (365)
Q Consensus 124 ~p~i~IPTT 132 (365)
+|+|.+-+.
T Consensus 85 iPvV~~~~~ 93 (309)
T 2fvy_A 85 VPVVFFNKE 93 (309)
T ss_dssp CCEEEESSC
T ss_pred CcEEEecCC
Confidence 999998665
Done!