BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017816
         (365 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
 pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
          Length = 356

 Score =  191 bits (486), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 188/346 (54%), Gaps = 12/346 (3%)

Query: 14  IDDVQELRKVEPSTIPERFVRDLTERPSS----LATALSPPAGIPIINLSKLMKGNHDEF 69
           ++ V+ L K    +IP+ ++R   E  S     L         +P I+L  +   +    
Sbjct: 4   VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63

Query: 70  HNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYP--MLPGTVQ 127
            N I  L  A  +WG   +I+HGI  +L+E ++K  ++FF L +EEK+KY      G +Q
Sbjct: 64  ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123

Query: 128 GYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCL 187
           GYG     + + +L+W + F     P   R+  +WP  P+++ E    Y++ +R L   +
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183

Query: 188 LKYVAISLGLKAETFEEMFGVAVQ---AVRMNYYPPCPRPDLVLGLSPHSDGSALTVLQQ 244
            K +++ LGL+ +  E+  G   +    +++NYYP CP+P+L LG+  H+D SALT +  
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243

Query: 245 GKGSSVGLQILKNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSVEHRAVTHKEKDRLSI 304
                 GLQ+     WV  + +P+++V+++GDT+E+L+NG+YKS+ HR + +KEK R+S 
Sbjct: 244 N--MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 301

Query: 305 VTFYAPSYE-VELGPMPELVNENNPCKYRRYNHGEYSKHYVTNKLQ 349
             F  P  + + L P+PE+V+  +P K+      ++ +H +  K Q
Sbjct: 302 AVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQ 347


>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Naringenin
          Length = 355

 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 188/346 (54%), Gaps = 12/346 (3%)

Query: 14  IDDVQELRKVEPSTIPERFVRDLTERPSS----LATALSPPAGIPIINLSKLMKGNHDEF 69
           ++ V+ L K    +IP+ ++R   E  S     L         +P I+L  +   +    
Sbjct: 3   VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62

Query: 70  HNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYP--MLPGTVQ 127
            N I  L  A  +WG   +I+HGI  +L+E ++K  ++FF L +EEK+KY      G +Q
Sbjct: 63  ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 122

Query: 128 GYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCL 187
           GYG     + + +L+W + F     P   R+  +WP  P+++ E    Y++ +R L   +
Sbjct: 123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182

Query: 188 LKYVAISLGLKAETFEEMFGVAVQ---AVRMNYYPPCPRPDLVLGLSPHSDGSALTVLQQ 244
            K +++ LGL+ +  E+  G   +    +++NYYP CP+P+L LG+  H+D SALT +  
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 242

Query: 245 GKGSSVGLQILKNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSVEHRAVTHKEKDRLSI 304
                 GLQ+     WV  + +P+++V+++GDT+E+L+NG+YKS+ HR + +KEK R+S 
Sbjct: 243 N--MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 300

Query: 305 VTFYAPSYE-VELGPMPELVNENNPCKYRRYNHGEYSKHYVTNKLQ 349
             F  P  + + L P+PE+V+  +P K+      ++ +H +  K Q
Sbjct: 301 AVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQ 346


>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
           (Selenomethionine Substituted)
          Length = 356

 Score =  187 bits (475), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 185/346 (53%), Gaps = 12/346 (3%)

Query: 14  IDDVQELRKVEPSTIPERFVRDLTERPSS----LATALSPPAGIPIINLSKLMKGNHDEF 69
           ++ V+ L K    +IP+ ++R   E  S     L         +P I+L  +   +    
Sbjct: 4   VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63

Query: 70  HNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYP--MLPGTVQ 127
            N I  L  A  +WG   +I+HGI  +L E ++K  ++FF L +EEK+KY      G +Q
Sbjct: 64  ENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123

Query: 128 GYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSETLETYSRDVRKLCQCL 187
           GYG     + + +L+W + F     P   R+  +WP  P+++ E    Y++ +R L   +
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183

Query: 188 LKYVAISLGLKAETFEEMFGVAVQAV---RMNYYPPCPRPDLVLGLSPHSDGSALTVLQQ 244
            K +++ LGL+ +  E+  G   + +   ++NYYP CP+P+L LG+  H+D SALT +  
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH 243

Query: 245 GKGSSVGLQILKNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSVEHRAVTHKEKDRLSI 304
                 GLQ+     WV  + +P+++V ++GDT+E+L+NG+YKS+ HR + +KEK R+S 
Sbjct: 244 N--XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISW 301

Query: 305 VTFYAPSYE-VELGPMPELVNENNPCKYRRYNHGEYSKHYVTNKLQ 349
             F  P  + + L P+PE V+  +P K+      ++ +H +  K Q
Sbjct: 302 AVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKEQ 347


>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 17/306 (5%)

Query: 53  IPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLP 112
            PII+L K+   N  E       +  ACE WGFF++++HGI   + + +EK  K  +   
Sbjct: 4   FPIISLDKV---NGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKC 60

Query: 113 LEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWPAKPAEFSET 172
            E++ K  +    ++G     V +E    DW + F L   P  I N    P    E+ E 
Sbjct: 61  XEQRFKELVASKALEG-----VQAEVTDXDWESTFFLKHLP--ISNISEVPDLDEEYREV 113

Query: 173 LETYSRDVRKLCQCLLKYVAISLGLKAETFEEMFGVAVQ---AVRMNYYPPCPRPDLVLG 229
              +++ + KL + LL  +  +LGL+    +  F  +       +++ YPPCP+PDL+ G
Sbjct: 114 XRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKG 173

Query: 230 LSPHSDGSALTVLQQGKGSSVGLQILKNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSV 289
           L  H+D   + +L Q    S GLQ+LK+  W+ V P  +++V+N+GD +EV+TNG+YKSV
Sbjct: 174 LRAHTDAGGIILLFQDDKVS-GLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232

Query: 290 EHRAVTHKEKDRLSIVTFYAPSYEVELGPMPELVN---ENNPCKYRRYNHGEYSKHYVTN 346
            HR +  K+  R S+ +FY P  +  + P P LV    E N   Y ++   +Y K Y   
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGL 292

Query: 347 KLQGKK 352
           K Q K+
Sbjct: 293 KFQAKE 298


>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
           Family Protein (Cc_0200) From Caulobacter Crescentus At
           1.44 A Resolution
 pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
           Family Protein (Cc_0200) From Caulobacter Crescentus At
           1.44 A Resolution
          Length = 312

 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 15/269 (5%)

Query: 76  LATACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVF 135
           L  + E +GF  + D+ ++   ++     AK FF LP+E KK+Y  + G  +GY    V 
Sbjct: 26  LGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVE 85

Query: 136 SEN--QKLDWCNMFALGVE---PHFIRN---PKLWPAKPAEFSETLETYSRDVRKLCQCL 187
           +       D    +  G +    H  R      +WPA+   F   +      +      +
Sbjct: 86  TAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKV 145

Query: 188 LKYVAISLGLKAETFEEMFGVAVQAVRMNYYPPCPRPDLVLGLSPHSDGSALTVLQQGKG 247
           L+ +A  L L+ + F+         +R+ +YPP P+    +    H D + +T+L   + 
Sbjct: 146 LEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE 205

Query: 248 SSVGLQIL-KNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSVEHRAVT----HKEKDRL 302
              GL++L ++  W+P+ P P  LVIN+GD +E LTN    S  HR V      +   R 
Sbjct: 206 G--GLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRY 263

Query: 303 SIVTFYAPSYEVELGPMPELVNENNPCKY 331
           S   F   + + E+  +   V   NP +Y
Sbjct: 264 STPFFLHFASDYEIKTLQNCVTAENPDRY 292


>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
          Length = 325

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 118/325 (36%), Gaps = 56/325 (17%)

Query: 51  AGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFM 110
           A +P I++S L   +          +  A  + GFF  ++HGI +  L    K     F 
Sbjct: 7   ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE----FH 62

Query: 111 LPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMF-----ALGVEPHFIRNPK----- 160
           + +  ++K+ +    ++ Y +     E+Q       +        VE     NP      
Sbjct: 63  MSITPEEKWDL---AIRAYNK-----EHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDH 114

Query: 161 -------------LWP--AKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEM 205
                        +WP   K   F +  E Y  DV  L   LLK  A++LG +   F   
Sbjct: 115 PRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARH 174

Query: 206 FG-----VAVQAVRMNYYPPCPRPDL-------VLGLSPHSDGSALTVLQQGKGSSVGLQ 253
           F       +V  +R  Y  P P   +        L    H D S +TVL Q    +  LQ
Sbjct: 175 FKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQN--LQ 232

Query: 254 ILKNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSVEHRAVTHKEKDRLSIVTFYAPSYE 313
           +     +  ++      +IN G  +  LTN  YK+  HR V     +R S+  F    Y+
Sbjct: 233 VETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYD 291

Query: 314 VELGPM----PELVNENNPCKYRRY 334
             + P     P   ++  P  Y  Y
Sbjct: 292 SVIDPFDPREPNGKSDREPLSYGDY 316


>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Manganese Complex)
 pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
           (Manganese Complex)
 pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
           Fe Complex)
 pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Monocyclic Sulfoxide - Fe Complex)
 pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
           Fe Complex)
 pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
           Exposed Product From Anaerobic Acov Fe Complex)
 pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
           Exposed Product From Anaerobic Acov Fe Complex)
 pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
           Exposed Product From Anaerobic Acov Fe Complex)
 pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Anaerobic Acov Fe Complex)
 pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (anaerobic Ac-vinylglycine Fe Complex)
 pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
           Fe Complex)
 pdb|1OBN|A Chain A, Isopenicillin N Synthase
           Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
 pdb|1OC1|A Chain A, Isopenicillin N Synthase
           Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
 pdb|1UZW|A Chain A, Isopenicillin N Synthase With
           L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
 pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
           Complex
 pdb|1W04|A Chain A, Isopenicillin N Synthase
           Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
 pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
           Complex
 pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
           No Complex
 pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
           Cysteinyl-L-Hexafluorovaline
 pdb|1W3V|A Chain A, Isopenicillin N Synthase
           D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
           D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
 pdb|1W3X|A Chain A, Isopenicillin N Synthase
           D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
           D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
           Minutes 20 Bar)
 pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
           (anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
 pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Anaerobic Ac-Cyclopropylglycine Fe Complex)
 pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
           Complex)
 pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
           (Acv-Fe- No Complex)
 pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
           Product Analogue
 pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
           Unexposed)
 pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
           35minutes Oxygen Exposure)
 pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
           Acomp (unexposed)
 pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
           L,L,L-Acab (Unexposed)
 pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
 pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
           Oxygen Exposed 1min 20bar)
 pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
           Acd2ab (Unexposed)
 pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
           Ac-D-S-Methyl-3r-Methylcysteine
 pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
 pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
 pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
          Length = 331

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 118/325 (36%), Gaps = 56/325 (17%)

Query: 51  AGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFM 110
           A +P I++S L   +          +  A  + GFF  ++HGI +  L    K     F 
Sbjct: 7   ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE----FH 62

Query: 111 LPLEEKKKYPMLPGTVQGYGQAFVFSENQKLDWCNMF-----ALGVEPHFIRNPK----- 160
           + +  ++K+ +    ++ Y +     E+Q       +        VE     NP      
Sbjct: 63  MSITPEEKWDL---AIRAYNK-----EHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDH 114

Query: 161 -------------LWP--AKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEM 205
                        +WP   K   F +  E Y  DV  L   LLK  A++LG +   F   
Sbjct: 115 PRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARH 174

Query: 206 FG-----VAVQAVRMNYYPPCPRPDL-------VLGLSPHSDGSALTVLQQGKGSSVGLQ 253
           F       +V  +R  Y  P P   +        L    H D S +TVL Q    +  LQ
Sbjct: 175 FKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQN--LQ 232

Query: 254 ILKNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSVEHRAVTHKEKDRLSIVTFYAPSYE 313
           +     +  ++      +IN G  +  LTN  YK+  HR V     +R S+  F    Y+
Sbjct: 233 VETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYD 291

Query: 314 VELGPM----PELVNENNPCKYRRY 334
             + P     P   ++  P  Y  Y
Sbjct: 292 SVIDPFDPREPNGKSDREPLSYGDY 316


>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
           With Iron And 2-Oxoglutarate
          Length = 306

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 115/281 (40%), Gaps = 35/281 (12%)

Query: 53  IPIINLSKLMKGNH-DEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFML 111
           +P  +L++L +G H DEF   +        + G F + D G+    L++ + +  DFF  
Sbjct: 5   VPTFSLAELQQGLHQDEFRRCL-------RDKGLFYLTDCGLTDTELKSAKDIVIDFFEH 57

Query: 112 PLEEKKKYPM--LPGTVQGY------GQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWP 163
             E +K+     +P   +G+        A + +     D+   +++G   +      L+P
Sbjct: 58  GSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADN------LFP 111

Query: 164 AKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMFGVAVQAVRMNYYPPCPR 223
           +   +F      Y        + + + V  + G + +   E F      +R  Y+P  P 
Sbjct: 112 S--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPE 169

Query: 224 ----PDLVLGLSPHSDGSALTVLQQGKGSS--VGLQILKNNTWVPVQPIPNALVINVGDT 277
                +  L ++PH D S +T++QQ   ++  V LQ      +  +   P+A+++  G  
Sbjct: 170 HRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAI 229

Query: 278 IEVLTNGRYKSVEHRAVTHKE-----KDRLSIVTFYAPSYE 313
             ++T G+ K+  H     +        R S V F  P+ +
Sbjct: 230 ATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270


>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
           With Succinate And Carbon Dioxide
          Length = 308

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 115/281 (40%), Gaps = 35/281 (12%)

Query: 53  IPIINLSKLMKGNH-DEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFML 111
           +P  +L++L +G H DEF   +        + G F + D G+    L++ + +  DFF  
Sbjct: 5   VPTFSLAELQQGLHQDEFRRCL-------RDKGLFYLTDCGLTDTELKSAKDIVIDFFEH 57

Query: 112 PLEEKKKYPM--LPGTVQGY------GQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWP 163
             E +K+     +P   +G+        A + +     D+   +++G   +      L+P
Sbjct: 58  GSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADN------LFP 111

Query: 164 AKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMFGVAVQAVRMNYYPPCPR 223
           +   +F      Y        + + + V  + G + +   E F      +R  Y+P  P 
Sbjct: 112 S--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPE 169

Query: 224 ----PDLVLGLSPHSDGSALTVLQQGKGSS--VGLQILKNNTWVPVQPIPNALVINVGDT 277
                +  L ++PH D S +T++QQ   ++  V LQ      +  +   P+A+++  G  
Sbjct: 170 HRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAI 229

Query: 278 IEVLTNGRYKSVEHRAVTHKE-----KDRLSIVTFYAPSYE 313
             ++T G+ K+  H     +        R S V F  P+ +
Sbjct: 230 ATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270


>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
           Deacetoxycephalosporin C Synthase: The Role Of
           Arginine-258
 pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
           Deacetoxycephalosporin C Synthase: The Role Of
           Arginine-258
          Length = 311

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 113/266 (42%), Gaps = 31/266 (11%)

Query: 53  IPIINLSKLMKGNH-DEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFML 111
           +P  +L++L +G H DEF   +        + G F + D G+    L++ + +  DFF  
Sbjct: 5   VPTFSLAELQQGLHQDEFRRCL-------RDKGLFYLTDCGLTDTELKSAKDIVIDFFEH 57

Query: 112 PLEEKKKYPM--LPGTVQGY------GQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWP 163
             E +K+     +P   +G+        A + +     D+   +++G   +      L+P
Sbjct: 58  GSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADN------LFP 111

Query: 164 AKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMFGVAVQAVRMNYYPPCPR 223
           +   +F      Y        + + + V  + G + +   E F      +R  Y+P  P 
Sbjct: 112 S--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPE 169

Query: 224 ----PDLVLGLSPHSDGSALTVLQQGKGSS--VGLQILKNNTWVPVQPIPNALVINVGDT 277
                +  L ++PH D S +T++QQ   ++  V LQ      +  +   P+A+++  G  
Sbjct: 170 HRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAI 229

Query: 278 IEVLTNGRYKSVEHRAVTHKEKDRLS 303
             ++T G+ K+  H  V    +D+++
Sbjct: 230 ATLVTGGQVKAPRHH-VAAPRRDQIA 254


>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
           2-Oxoglutarate And Ampicillin
 pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
 pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
           2-Oxoglutarate And Penicillin G
 pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
           Penicillin G
 pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
           Deacetoxycephalosporin C
 pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
 pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
 pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
           And 2- Oxoglutarate
 pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
           5-hydroxy- 4-keto Valeric Acid
          Length = 311

 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 115/281 (40%), Gaps = 35/281 (12%)

Query: 53  IPIINLSKLMKGNH-DEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFML 111
           +P  +L++L +G H DEF   +        + G F + D G+    L++ + +  DFF  
Sbjct: 5   VPTFSLAELQQGLHQDEFRRCL-------RDKGLFYLTDCGLTDTELKSAKDLVIDFFEH 57

Query: 112 PLEEKKKYPM--LPGTVQGY------GQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWP 163
             E +K+     +P   +G+        A + +     D+   +++G   +      L+P
Sbjct: 58  GSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADN------LFP 111

Query: 164 AKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMFGVAVQAVRMNYYPPCPR 223
           +   +F      Y        + + + V  + G + +   E F      +R  Y+P  P 
Sbjct: 112 S--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPE 169

Query: 224 ----PDLVLGLSPHSDGSALTVLQQGKGSS--VGLQILKNNTWVPVQPIPNALVINVGDT 277
                +  L ++PH D S +T++QQ   ++  V LQ      +  +   P+A+++  G  
Sbjct: 170 HRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAI 229

Query: 278 IEVLTNGRYKSVEHRAVTHKE-----KDRLSIVTFYAPSYE 313
             ++T G+ K+  H     +        R S V F  P+ +
Sbjct: 230 ATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270


>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
           Implications For Substrate Binding And Catalysis In A
           New Crystal Form Of Deacetoxycephalosporin C Synthase
 pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
           With Fe(Ii) And Ethylene Glycol
 pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
           Tag) In Complex With Fe(Ii) And Ampicillin
 pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
           Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
          Length = 331

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 115/281 (40%), Gaps = 35/281 (12%)

Query: 53  IPIINLSKLMKGNH-DEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKVAKDFFML 111
           +P  +L++L +G H DEF   +        + G F + D G+    L++ + +  DFF  
Sbjct: 25  VPTFSLAELQQGLHQDEFRRCL-------RDKGLFYLTDCGLTDTELKSAKDLVIDFFEH 77

Query: 112 PLEEKKKYPM--LPGTVQGY------GQAFVFSENQKLDWCNMFALGVEPHFIRNPKLWP 163
             E +K+     +P   +G+        A + +     D+   +++G   +      L+P
Sbjct: 78  GSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADN------LFP 131

Query: 164 AKPAEFSETLETYSRDVRKLCQCLLKYVAISLGLKAETFEEMFGVAVQAVRMNYYPPCPR 223
           +   +F      Y        + + + V  + G + +   E F      +R  Y+P  P 
Sbjct: 132 S--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPE 189

Query: 224 ----PDLVLGLSPHSDGSALTVLQQGKGSS--VGLQILKNNTWVPVQPIPNALVINVGDT 277
                +  L ++PH D S +T++QQ   ++  V LQ      +  +   P+A+++  G  
Sbjct: 190 HRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAI 249

Query: 278 IEVLTNGRYKSVEHRAVTHKE-----KDRLSIVTFYAPSYE 313
             ++T G+ K+  H     +        R S V F  P+ +
Sbjct: 250 ATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290


>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
           Shewanella Oneidensis At 2.20 A Resolution
 pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
           Shewanella Oneidensis At 2.20 A Resolution
 pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
           Shewanella Oneidensis At 2.20 A Resolution
 pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
           Shewanella Oneidensis At 2.20 A Resolution
          Length = 280

 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 36/251 (14%)

Query: 79  ACEEWGFFQVIDHGIELNLLENIEKVAKDFFMLPLEEKKKYPMLPGTVQGYGQAFVFSEN 138
           +  E GF  + +H I+  L+E I    + FF    E K ++     T  G+  A + SE 
Sbjct: 21  SLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFXFNRETHDGFFPASI-SET 77

Query: 139 QK-------LDWCNMFALGVEPHFIRNPKLWPAKPA-----EFSETLETYSRDVRKLCQC 186
            K        ++ +++  G  P  +R   L   + A     E  E +ETYS D  K    
Sbjct: 78  AKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIK---- 133

Query: 187 LLKYVAISLGLKAETFEEMFGVAVQAVRMNYYPPCPRPDL--VLGLSPHSDGSALTVLQQ 244
                  S+ L     E +       +R+ +YPP    +    +  + H D + +TVL  
Sbjct: 134 ----AKFSIPLP----EXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPT 185

Query: 245 GKGSSVGLQI-LKNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSVEHRAV----THKEK 299
              +  GLQ+  K+ +W+ V      ++IN+GD ++  ++G + S  HR +    T K K
Sbjct: 186 A--NEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTK 243

Query: 300 DRLSIVTFYAP 310
            R+S+  F  P
Sbjct: 244 SRISLPLFLHP 254


>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
 pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
 pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
 pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
 pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
          Length = 477

 Score = 31.2 bits (69), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 34  RDLTERPSSLATALSPPAGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGI 93
           +DL    + LA+ L     +P+  L + + G  D FH E+   A A  E       DH  
Sbjct: 353 KDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFRE-------DHTR 405

Query: 94  ELNLLENIEKVAKDFFMLPL 113
           +++  E  ++  ++ F L  
Sbjct: 406 KVDTYEAFKEAVQEGFALAF 425


>pdb|4FQK|B Chain B, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
 pdb|4FQK|D Chain D, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
 pdb|4FQM|B Chain B, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|D Chain D, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|F Chain F, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|H Chain H, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|J Chain J, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|L Chain L, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
          Length = 179

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 47  LSPPAGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHGIELNLLENIEKV-- 104
           L+  + + + NL +L  G  DE HNEIL L    ++      I   IEL +L + E +  
Sbjct: 52  LNSLSELEVKNLQRL-SGAMDELHNEILELDEKVDDL-RADTISSQIELAVLLSNEGIIN 109

Query: 105 AKDFFMLPLEEKKKYPMLPGTVQ 127
           ++D  +L LE K K  + P  V+
Sbjct: 110 SEDEHLLALERKLKKMLGPSAVE 132


>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
           Maritima With Xylobiose
 pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
           Maritima With Xylobiose
 pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
           Maritima
 pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
           Maritima
          Length = 328

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 118 KYPMLPGTVQGYGQAFVFSEN 138
           KY  +PG  +GYG+A +F EN
Sbjct: 286 KYSWVPGFFKGYGKALLFDEN 306


>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
           Petrophila Rku-1
 pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
           Petrophila Rku-1
 pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
           Petrophila Rku-1 In Complex With Xylobiose
 pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
           Petrophila Rku-1 In Complex With Xylobiose
          Length = 341

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 118 KYPMLPGTVQGYGQAFVFSEN 138
           KY  +PG  +GYG+A +F EN
Sbjct: 302 KYSWVPGFFKGYGKALLFDEN 322


>pdb|3BT6|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin
          Length = 169

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 33  VRDLTERPSSLATALSPPAGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHG 92
           ++   E  + +   L+  + + + NL +L  G  DE HNEIL L    ++      I   
Sbjct: 38  LKSTQEAINKITKNLNSLSELEVKNLQRL-SGAMDELHNEILELDEKVDDL-RADTISSQ 95

Query: 93  IELNLLENIEKV--AKDFFMLPLEEKKKYPMLPGTVQ 127
           IEL +L + E +  ++D  +L LE K K  + P  V 
Sbjct: 96  IELAVLLSNEGIINSEDEHLLALERKLKKMLGPSAVD 132


>pdb|2RFT|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
           Complex With Lsta Receptor Analog
 pdb|2RFU|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
           Complex With Lstc Receptor Analog
          Length = 176

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 33  VRDLTERPSSLATALSPPAGIPIINLSKLMKGNHDEFHNEILNLATACEEWGFFQVIDHG 92
           ++   E  + +   L+  + + + NL +L  G  DE HNEIL L    ++      I   
Sbjct: 38  LKSTQEAINKITKNLNSLSELEVKNLQRL-SGAMDELHNEILELDEKVDDL-RADTISSQ 95

Query: 93  IELNLLENIEKV--AKDFFMLPLEEKKKYPMLPGTVQ 127
           IEL +L + E +  ++D  +L LE K K  + P  V 
Sbjct: 96  IELAVLLSNEGIINSEDEHLLALERKLKKMLGPSAVD 132


>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
           From Thermus Thermophilus Hb8
 pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
           From Thermus Thermophilus Hb8
          Length = 379

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 30  ERFVRDLTERPSSLATALSPP---AGIPIINLSKLMKGNHDEFHNEILNLATACE-EW 83
           ERF+R LTE+P+  A ALS P   +    +    + +G+H   +   + ++   E EW
Sbjct: 107 ERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEW 164


>pdb|2C5S|A Chain A, Crystal Structure Of Bacillus Anthracis Thii, A Trna-
           Modifying Enzyme Containing The Predicted Rna-Binding
           Thump Domain
          Length = 413

 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 244 QGKGSSVGLQILKNNTWVPVQPIPNALVINVGDTIEVLTNGRYKSVEHRAVTHKEKDRLS 303
           +GK  S  +  LK+N    ++  PN  +    D + +  NG     +H AV+ + KD   
Sbjct: 26  KGKNRSKFVSTLKDNVKFKLKKFPNIKIDATHDRMYIQLNGE----DHEAVSERLKDVFG 81

Query: 304 IVTF 307
           I  F
Sbjct: 82  IHKF 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,408,157
Number of Sequences: 62578
Number of extensions: 486364
Number of successful extensions: 1086
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1056
Number of HSP's gapped (non-prelim): 29
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)