BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017817
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 189 NATHQVGVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 247
+ +HQVGV G V +++ ++LVVQ++ +WK P G + E+I AVREV EE
Sbjct: 22 SMSHQVGVAGAVFDESTRKILVVQDR---NKLKNMWKFPGGLSEPEEDIGDTAVREVFEE 78
Query: 248 TGVDTEFVEVIAFRHAHNV--AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWM------ 299
TG+ +EF V++ R H AF KSD++ IC LKP S I E +WM
Sbjct: 79 TGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLA 138
Query: 300 ------PFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLY 335
P V + L+ G ID+ + L Y GL+
Sbjct: 139 KTENTTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLF 180
>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|E Chain E, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|F Chain F, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|G Chain G, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|H Chain H, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
Length = 113
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 105 DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 160
D + G+ V RL + D AF L+ ++ WR + +WL +P+ + + A
Sbjct: 30 DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 89
Query: 161 EGFKYHHAEPEYLMLTYWIPDGP 183
GF +HHAE + LT W+ +GP
Sbjct: 90 LGFCFHHAESDSSTLTLWLREGP 112
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
I +++L+VQE GLW LP G+ D + + V+EVKEE G+D E V+A
Sbjct: 76 AIFQEDKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVA 129
Query: 260 F--RHAHN---VAFQKSDLFFICML 279
+H +N A + + +F +C L
Sbjct: 130 ILDKHKNNPAKSAHRVTKVFILCRL 154
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 195 GVGGFVINDNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
G ++N+ ++L+VQEK +P AGLW +P+G +++ E AVRE EETG+
Sbjct: 15 AAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRV 74
Query: 253 EFVEVI 258
V+ +
Sbjct: 75 RPVKFL 80
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
++G GG V N EVL+++++ G W P G + E + + AVREV EETGV
Sbjct: 2 ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRA 55
Query: 253 EFV 255
E +
Sbjct: 56 EVL 58
>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|B Chain B, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|C Chain C, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|D Chain D, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
Length = 162
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 199 FVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDES--EEIFKGAVREVKEETGVDTEFV 255
F +D +VL+VQ N F GLW LP GFIDE+ E + + +R++ E+T V ++
Sbjct: 30 FTYHDQQLKVLLVQRS--NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYI 87
Query: 256 EVIAF--RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309
E + ++ + + + ++ + +I++ + KW P + ++ PL
Sbjct: 88 EQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIAS--VSDVKWWPLADVLQMPL 141
>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ5|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ6|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
pdb|3GZ6|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
Length = 240
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 199 FVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDES--EEIFKGAVREVKEETGVDTEFV 255
F +D +VL+VQ N F GLW LP GFIDE+ E + + +R++ E+T V ++
Sbjct: 30 FTYHDQQLKVLLVQRS--NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYI 87
Query: 256 EVIAF--RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309
E + ++ + + + ++ + +I++ + KW P + ++ PL
Sbjct: 88 EQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIAS--VSDVKWWPLADVLQMPL 141
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
++G GG V N EVL+++++ G W P G + E + + AVREV E+TGV
Sbjct: 2 ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEQTGVRA 55
Query: 253 EFV 255
E +
Sbjct: 56 EVL 58
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 181 DGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGA 240
GP +P ++ + V +++ +N VL+ Q + AGLW+ P G +++ E
Sbjct: 17 QGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGK-SLAGLWEFPGGKVEQGETPEASL 75
Query: 241 VREVKEETGVDTE 253
+RE++EE GV +
Sbjct: 76 IRELEEELGVHVQ 88
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 187 PGNATH----QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVR 242
PG+ H +VG G ++ D +L+ +++ AG W LP G +D E + + R
Sbjct: 19 PGSMQHTEQPRVGCGAAIVRDGRILLIKRKRAPE---AGCWGLPGGKVDWLEPVERAVCR 75
Query: 243 EVKEETGVDTEFVEVI 258
E++EE G+ E ++
Sbjct: 76 EIEEELGIALERATLL 91
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 180 PDGPCVLPGNATHQVGVGGFVINDNNEVLVVQE--KYCNPAFAGLWKLPTGFIDESEEIF 237
P P L N + V +++ +EVL++QE + C G W LP G ++ E I
Sbjct: 9 PPAPVRLRKNVCYVVL--AVFLSEQDEVLLIQEAKRECR----GSWYLPAGRMEPGETIV 62
Query: 238 KGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVD---DLEIK 294
+ REVKEE G+ E +++ S + F+ + +P +K D E
Sbjct: 63 EALQREVKEEAGLHCEPETLLSVEERG-----PSWVRFVFLARPTGGILKTSKEADAESL 117
Query: 295 GAKWMP 300
A W P
Sbjct: 118 QAAWYP 123
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
+I+ + VL+ Q + AGLW+ P G ++ E VRE+ EE GVDT
Sbjct: 15 LIDPDGRVLLAQRPPGK-SLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 223 WKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
W++P G IDE E+ A+RE++EETGV + EVIA
Sbjct: 40 WQMPQGGIDEGEDPRNAAIRELREETGVTS--AEVIA 74
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
+ V + N+ E L+++ + AG W LP G ++ E + +G REV EETG+
Sbjct: 9 ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 203 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
D +VL++Q K F W LP GF++ +E +RE KEETGV
Sbjct: 54 DQLKVLLIQRK--GHPFRNSWALPGGFVNRNESTEDSVLRETKEETGV 99
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV 257
G + N+VL+ + + G W LP GF + +E + +GA RE EE E E+
Sbjct: 44 GCIPEWENKVLLCKRAIA--PYRGKWTLPAGFXENNETLVQGAARETLEEANARVEIREL 101
Query: 258 IA 259
A
Sbjct: 102 YA 103
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
V V VI N+ +L+VQ K +P LW LP GF++ E I + +RE+ EET ++
Sbjct: 209 VTVDALVIV-NDHILMVQRK-AHPG-KDLWALPGGFLECDETIAQAIIRELFEETNIN 263
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
V GF+ D ++V ++ N + AG W+ P G I+ E + RE+ EE G++ E
Sbjct: 25 VAGFLRKDGK--ILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVG 82
Query: 256 EV 257
E+
Sbjct: 83 EL 84
>pdb|2QJO|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|C Chain C, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp
Length = 341
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 248
V+ VL+V+ + P GL LP GFI ++E + +G +RE+KEET
Sbjct: 209 VVVQAGHVLMVRRQ-AKPGL-GLIALPGGFIKQNETLVEGMLRELKEET 255
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
+ GG + D EVL+++ P+ +W P G I+ E+ + AVREV EETGV
Sbjct: 3 KEFSAGGVLFKDG-EVLLIK----TPS--NVWSFPKGNIEPGEKPEETAVREVWEETGVK 55
Query: 252 TEFVEVIAFRHAHNVAFQKSDLFFIC----MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307
E ++ I H K + F ++K E + E+K AK+ P E K
Sbjct: 56 GEILDYIG--EIHYWYTLKGERIFKTVKYYLMKYKEGEPR-PSWEVKDAKFFPIKEAKKL 112
Query: 308 PLIQGDC-MFKKVIDI 322
+GD +F+K + +
Sbjct: 113 LKYKGDKEIFEKALKL 128
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
V++ + LVV+E A LW P G ++ E + + A RE+ EETG+ +
Sbjct: 11 VVHAEGKFLVVEETINGKA---LWNQPAGHLEADETLVEAAARELWEETGISAQ 61
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 187 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKE 246
P + + V +I + ++L+ Q + AGLW+ G ++ E + VRE++E
Sbjct: 2 PLGSMKMIEVVAAIIERDGKILLAQ-RPAQSDQAGLWEFAGGKVEPDESQRQALVRELRE 60
Query: 247 ETGVDTEFVEVIA 259
E G++ E +A
Sbjct: 61 ELGIEATVGEYVA 73
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 220 AGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
G W +P GF+DE+E + A RE++EET +
Sbjct: 66 GGKWAVPGGFVDENESAEQAAERELEEETSL 96
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 202 NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
D VL++Q + +P F W+ TG ++E E + A+REVKEE +D
Sbjct: 19 QDTKRVLMLQRR-DDPDF---WQSVTGSVEEGETAPQAAMREVKEEVTID 64
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 201 INDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
+ + L+V++ Y +P L ++P G +DE E A RE++EE G + E
Sbjct: 49 VTERGTALLVRQ-YRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAE 100
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 223 WKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI-AFRHAHNVAFQ---KSDLFFICM 278
W P G ++ E+ + A+RE +EE G++ + +I F+ N + K+ ++++
Sbjct: 38 WTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAE 97
Query: 279 LKPLSTEIKVDDLEIKGAKWMPFME 303
+K EI++ E + +W+ E
Sbjct: 98 VKDYDVEIRLSH-EHQAYRWLGLEE 121
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 223 WKLPTGFIDESEEIFKGAVREVKEETGVD 251
W P G ID+ E A+REV EETG D
Sbjct: 123 WGFPKGKIDKDESDVDCAIREVYEETGFD 151
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 223 WKLPTGFIDESEEIFKGAVREVKEETGVD 251
W P G ID+ E A+REV EETG D
Sbjct: 128 WGFPKGKIDKDESDVDCAIREVYEETGFD 156
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal Complex,
Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
Length = 129
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
Q+ VG + N+NNE+ + + + + A + P G I+ E + VRE++EE G+
Sbjct: 5 QIAVG-IIRNENNEIFITR-RAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGL--WKLPTGFIDESEEIFKGAVREVKEETG 249
H+ V + + + V Q PA GL ++P G I+ E+ + A RE+ EETG
Sbjct: 33 HKPAVAVIALREGRMLFVRQ---MRPA-VGLAPLEIPAGLIEPGEDPLEAARRELAEETG 88
Query: 250 VDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWM 299
+ + + ++ + +K+ +F LK E D+ E WM
Sbjct: 89 LSGDLTYLFSYFVSPGFTDEKTHVFLAENLK--EVEAHPDEDEAIEVVWM 136
>pdb|1MK1|A Chain A, Structure Of The Mt-adprase In Complex With Adpr, A Nudix
Enzyme
pdb|1MP2|A Chain A, Structure Of Mt-Adprase (Apoenzyme), A Nudix Hydrolase
From Mycobacterium Tuberculosis
pdb|1MQE|A Chain A, Structure Of The Mt-adprase In Complex With Gadolidium And
Adp-ribose, A Nudix Enzyme
pdb|1MQW|A Chain A, Structure Of The Mt-adprase In Complex With Three Mn2+
Ions And Ampcpr, A Nudix Enzyme
pdb|1MR2|A Chain A, Structure Of The Mt-Adprase In Complex With 1 Mn2+ Ion And
Amp-Cp (A Inhibitor), A Nudix Enzyme
Length = 207
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 179 IPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFID-ESEEIF 237
+P G V H V ++DN + +V +Y + LW+LP G +D E
Sbjct: 29 MPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVY-QYRHTYGRRLWELPAGLLDVAGEPPH 87
Query: 238 KGAVREVKEETGVDTEFVEVI 258
A RE++EE G+ +V+
Sbjct: 88 LTAARELREEVGLQASTWQVL 108
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 223 WKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV 257
W P G +D E+ ++ A+RE KEE + E + +
Sbjct: 32 WTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI 66
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 223 WKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI-AFRHAHNVAFQ---KSDLFFICM 278
W P G ++ E+ + A+R +EE G++ + +I F+ N + K+ ++++
Sbjct: 43 WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAE 102
Query: 279 LKPLSTEIKVDDLEIKGAKWMPFME 303
+K EI++ E + +W+ E
Sbjct: 103 VKDYDVEIRLSH-EHQAYRWLGLEE 126
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE 256
E +V+ +++ P + P G ID+ E A+RE++EETG + E
Sbjct: 63 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAE 113
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE 256
E +V+ +++ P + P G ID+ E A+RE++EETG + E
Sbjct: 62 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAE 112
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 197 GGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD-TEF 254
G + N+N +++L+VQ + W P G I + E +REVKEE G D T++
Sbjct: 8 GAAIFNENLSKILLVQGTESDS-----WSFPRGKISKDENDIDCCIREVKEEIGFDLTDY 62
Query: 255 VE 256
++
Sbjct: 63 ID 64
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 34/131 (25%)
Query: 141 KGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPD----GPCVLPGNATHQVGV 196
+GI PL +A L A E L LTYWIP G PG + + V
Sbjct: 324 RGIMEDKPLADAALA------------AMREKLPLTYWIPTAFKIGYVEQPGISHRKSMV 371
Query: 197 GGFVINDNNEVLVVQEKYCN--------PAFAGLWKLPTGFIDESEEIFKGAVRE----- 243
++ +N E+ V ++ C+ AFA W L G +E + + + +E
Sbjct: 372 ---LLANNTEIARVLDRICHNFDKLWQRKAFAN-WYLNEGMSEEQINVLRASAQELVQSY 427
Query: 244 -VKEETGVDTE 253
V EE+G +
Sbjct: 428 QVAEESGAKAK 438
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE 256
E +V+ +++ P + P G ID+ E A+RE++EETG + E
Sbjct: 77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAE 127
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE 256
E +V+ +++ P + P G ID+ E A+RE++EETG + E
Sbjct: 75 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAE 125
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGL--WKLPTGFIDESEEIFKGAVREVKEETG 249
H+ V + + + V Q PA GL ++P G I+ E+ + A RE+ E+TG
Sbjct: 33 HKPAVAVIALREGRMLFVRQ---MRPA-VGLAPLEIPAGLIEPGEDPLEAARRELAEQTG 88
Query: 250 VDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWM 299
+ + + ++ + +K+ +F LK E D+ E WM
Sbjct: 89 LSGDLTYLFSYFVSPGFTDEKTHVFLAENLK--EVEAHPDEDEAIEVVWM 136
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGL--WKLPTGFIDESEEIFKGAVREVKEETG 249
H+ V + + + V Q PA GL ++P G I+ E+ + A R++ EETG
Sbjct: 33 HKPAVAVIALREGRMLFVRQ---MRPA-VGLAPLEIPAGLIEPGEDPLEAARRQLAEETG 88
Query: 250 VDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWM 299
+ + + ++ + +K+ +F LK E D+ E WM
Sbjct: 89 LSGDLTYLFSYFVSPGFTDEKTHVFLAENLK--EVEAHPDEDEAIEVVWM 136
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE 256
E +V+ +++ P + P G ID+ E A+RE++EETG + E
Sbjct: 75 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAE 125
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
V+ N ++L V+EK G W LP G+ D + A +EV EETG + + +++A
Sbjct: 74 VVFQNEKLLFVKEKS-----DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLA 128
Query: 260 F--RHAHN---VAFQKSDLFFICML--KPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312
+ H A +F C + T I+ +++E G +P + + Q
Sbjct: 129 IFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLSIARNTEDQI 188
Query: 313 DCMFKKVID 321
MF + D
Sbjct: 189 KEMFAYMKD 197
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
++ D+++VL++Q+ G W P G ++ E I + RE EETG+
Sbjct: 10 IVVDHDQVLLLQKPR-----RGWWVAPGGKMEAGESILETVKREYWEETGI 55
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
V+ +N +VL+V+ K G++ P G ++ +E + RE +EETG+ VE I
Sbjct: 7 VLVENGKVLLVKHKRL-----GVYIYPGGHVEHNETPIEAVKREFEEETGI---VVEPIG 58
Query: 260 FRHA 263
F +
Sbjct: 59 FTYG 62
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 189 NATHQVGVGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 247
N + F +N + N+ L + N W G D ++ K A++E+KEE
Sbjct: 41 NTIAHLTSSAFAVNKERNKFLXIHHNIYNS-----WAWTGGHSDNEKDQLKVAIKELKEE 95
Query: 248 TGV-------DTEF-VEVIAFR-HAHNVAFQKSDL-----FFICMLKPLSTEIKVDDLEI 293
TGV D F ++V+ H + S L + I + + +K D E
Sbjct: 96 TGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLXLKED--EN 153
Query: 294 KGAKWMPFMEFVK 306
G W+PF E K
Sbjct: 154 SGVXWIPFNEISK 166
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
V+ N ++L V+EK G W LP G+ D + A +EV EETG + + +++A
Sbjct: 74 VVFQNEKLLFVKEKS-----DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLA 128
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 199 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
F +EVL+V + + W +P G ++ EE AVREV EE GV
Sbjct: 18 FRSEQEDEVLLV----SSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGV 65
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 223 WKLPTGFIDESEEIFKGAVREVKEETG 249
W P G ++++E AVRE+ EETG
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEETG 77
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 199 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
F +EVL+V + + W +P G ++ EE AVREV EE GV
Sbjct: 10 FRSEREDEVLLVS----SSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGV 57
>pdb|2FB1|A Chain A, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|B Chain B, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|C Chain C, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|D Chain D, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
Length = 226
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 199 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 258
F N+ L++ ++ PA G W L GF+ + E + A R + E TG++ + E +
Sbjct: 21 FGFNEGEISLLLLKRNFEPA-XGEWSLXGGFVQKDESVDDAAKRVLAELTGLENVYXEQV 79
Query: 259 A 259
Sbjct: 80 G 80
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
V + N+ E+L +Y + W LP G I+ E + +REV EETG+ +
Sbjct: 24 VAAVIKNEQGELLF---QYPGGEY---WSLPAGAIEPGETPEEAVIREVWEETGLKVQ 75
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 220 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
AG W G + E E I GA RE++EE+G+ + + +
Sbjct: 49 AGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVG 88
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 220 AGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
AG W G + E E I GA RE++EE+G+
Sbjct: 29 AGRWNGFGGKVQEGETIEDGARRELQEESGL 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,276,527
Number of Sequences: 62578
Number of extensions: 493837
Number of successful extensions: 1072
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 57
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)