Query 017817
Match_columns 365
No_of_seqs 396 out of 2570
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 2.4E-45 5.2E-50 346.4 8.7 263 96-358 18-282 (295)
2 cd04670 Nudix_Hydrolase_12 Mem 99.9 1.1E-21 2.5E-26 165.8 13.0 125 192-321 1-125 (127)
3 cd04679 Nudix_Hydrolase_20 Mem 99.8 4.6E-19 9.9E-24 149.4 14.1 111 193-306 2-114 (125)
4 cd03430 GDPMH GDP-mannose glyc 99.8 5.9E-19 1.3E-23 153.4 14.2 116 192-311 11-136 (144)
5 PRK09438 nudB dihydroneopterin 99.8 3.3E-19 7.1E-24 155.0 11.7 126 192-327 6-146 (148)
6 PRK15434 GDP-mannose mannosyl 99.8 8.9E-19 1.9E-23 155.0 14.5 115 193-311 17-141 (159)
7 PRK11762 nudE adenosine nucleo 99.8 2.6E-18 5.7E-23 155.5 17.5 153 133-310 6-162 (185)
8 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 8E-19 1.7E-23 150.0 13.4 118 193-311 2-119 (137)
9 PRK00714 RNA pyrophosphohydrol 99.8 1.5E-18 3.2E-23 153.0 14.3 123 192-318 7-146 (156)
10 cd03671 Ap4A_hydrolase_plant_l 99.8 9.3E-19 2E-23 152.3 12.9 116 193-312 3-136 (147)
11 PRK15472 nucleoside triphospha 99.8 1.4E-18 3.1E-23 149.8 13.2 117 196-313 6-131 (141)
12 cd04680 Nudix_Hydrolase_21 Mem 99.8 1.2E-18 2.5E-23 145.1 11.4 107 195-308 2-109 (120)
13 cd03427 MTH1 MutT homolog-1 (M 99.8 4.1E-18 9E-23 145.5 14.6 123 196-325 4-126 (137)
14 cd04700 DR1025_like DR1025 fro 99.8 3.4E-18 7.3E-23 148.2 13.9 115 192-309 12-127 (142)
15 cd04684 Nudix_Hydrolase_25 Con 99.8 2.8E-18 6.1E-23 144.0 13.0 114 195-311 2-121 (128)
16 cd04678 Nudix_Hydrolase_19 Mem 99.8 4.3E-18 9.2E-23 144.1 13.9 113 193-307 2-117 (129)
17 cd03673 Ap6A_hydrolase Diadeno 99.8 2E-18 4.3E-23 145.5 11.8 120 194-323 2-129 (131)
18 cd03674 Nudix_Hydrolase_1 Memb 99.8 3.6E-18 7.7E-23 147.1 13.5 121 194-324 3-137 (138)
19 cd04673 Nudix_Hydrolase_15 Mem 99.8 4E-18 8.6E-23 142.1 13.3 115 194-312 1-119 (122)
20 PF00293 NUDIX: NUDIX domain; 99.8 3.7E-18 8E-23 143.6 13.2 120 193-312 2-124 (134)
21 cd04696 Nudix_Hydrolase_37 Mem 99.8 3.7E-18 8E-23 144.0 12.9 114 194-312 3-119 (125)
22 cd03672 Dcp2p mRNA decapping e 99.8 1.9E-18 4.2E-23 150.6 11.4 129 195-329 3-140 (145)
23 PLN02325 nudix hydrolase 99.8 3.6E-18 7.8E-23 148.6 12.9 117 188-307 4-125 (144)
24 cd04682 Nudix_Hydrolase_23 Mem 99.8 2.8E-18 6.1E-23 144.2 11.7 114 196-310 3-117 (122)
25 cd04676 Nudix_Hydrolase_17 Mem 99.8 9E-18 2E-22 140.6 14.2 113 193-312 2-122 (129)
26 cd04681 Nudix_Hydrolase_22 Mem 99.8 6.9E-18 1.5E-22 142.8 13.5 108 195-306 3-114 (130)
27 cd04677 Nudix_Hydrolase_18 Mem 99.8 5.9E-18 1.3E-22 143.3 13.1 113 191-310 5-125 (132)
28 cd04683 Nudix_Hydrolase_24 Mem 99.8 1E-17 2.2E-22 139.9 13.8 112 195-310 2-117 (120)
29 cd04669 Nudix_Hydrolase_11 Mem 99.8 1.2E-17 2.7E-22 140.5 14.1 107 196-311 3-118 (121)
30 cd04672 Nudix_Hydrolase_14 Mem 99.8 2.1E-17 4.5E-22 139.1 14.0 110 193-311 2-116 (123)
31 cd03426 CoAse Coenzyme A pyrop 99.7 7.6E-18 1.6E-22 148.4 11.5 114 195-309 4-120 (157)
32 cd04697 Nudix_Hydrolase_38 Mem 99.7 7.7E-18 1.7E-22 142.7 11.0 112 195-309 2-114 (126)
33 cd03675 Nudix_Hydrolase_2 Cont 99.7 2.9E-17 6.3E-22 139.9 14.2 126 195-325 2-129 (134)
34 cd04691 Nudix_Hydrolase_32 Mem 99.7 2.1E-17 4.6E-22 138.3 12.7 107 196-308 3-109 (117)
35 cd04699 Nudix_Hydrolase_39 Mem 99.7 1.2E-17 2.6E-22 140.4 11.0 114 194-310 2-117 (129)
36 PRK10546 pyrimidine (deoxy)nuc 99.7 6.4E-17 1.4E-21 137.8 15.5 123 196-326 6-128 (135)
37 cd04671 Nudix_Hydrolase_13 Mem 99.7 4E-17 8.7E-22 138.2 13.8 108 196-311 3-113 (123)
38 COG1051 ADP-ribose pyrophospha 99.7 4.2E-17 9.2E-22 142.2 13.9 116 190-309 7-124 (145)
39 cd04687 Nudix_Hydrolase_28 Mem 99.7 5.4E-17 1.2E-21 137.4 13.6 114 194-311 2-125 (128)
40 cd04688 Nudix_Hydrolase_29 Mem 99.7 6.7E-17 1.4E-21 136.3 14.1 110 195-312 3-123 (126)
41 PRK00241 nudC NADH pyrophospha 99.7 5.4E-17 1.2E-21 154.1 14.4 131 184-325 123-254 (256)
42 PRK15393 NUDIX hydrolase YfcD; 99.7 5.3E-17 1.1E-21 146.5 13.5 130 194-329 38-170 (180)
43 PRK10729 nudF ADP-ribose pyrop 99.7 1.2E-16 2.7E-21 146.7 16.1 115 195-310 51-174 (202)
44 cd03429 NADH_pyrophosphatase N 99.7 4.3E-17 9.3E-22 139.3 12.2 106 195-307 2-107 (131)
45 cd04693 Nudix_Hydrolase_34 Mem 99.7 2E-17 4.4E-22 139.9 9.9 111 195-309 2-115 (127)
46 PRK10776 nucleoside triphospha 99.7 1.9E-16 4.1E-21 132.9 15.6 120 196-323 7-126 (129)
47 cd04690 Nudix_Hydrolase_31 Mem 99.7 1.1E-16 2.4E-21 133.1 12.7 107 196-311 3-114 (118)
48 cd04664 Nudix_Hydrolase_7 Memb 99.7 7E-17 1.5E-21 136.8 11.5 112 195-311 3-122 (129)
49 cd04689 Nudix_Hydrolase_30 Mem 99.7 1.5E-16 3.2E-21 134.0 12.9 107 194-306 2-113 (125)
50 cd04511 Nudix_Hydrolase_4 Memb 99.7 2.3E-16 5E-21 134.2 14.0 110 189-306 9-118 (130)
51 cd04692 Nudix_Hydrolase_33 Mem 99.7 6.5E-17 1.4E-21 140.1 10.7 114 195-308 4-128 (144)
52 cd03425 MutT_pyrophosphohydrol 99.7 3.2E-16 7E-21 129.8 14.3 113 196-313 4-116 (124)
53 TIGR00586 mutt mutator mutT pr 99.7 6.2E-16 1.3E-20 130.1 15.5 119 195-321 6-124 (128)
54 cd03428 Ap4A_hydrolase_human_l 99.7 1.1E-16 2.4E-21 135.3 10.8 118 195-323 4-128 (130)
55 cd04694 Nudix_Hydrolase_35 Mem 99.7 2.3E-16 4.9E-21 137.3 11.7 114 194-307 2-131 (143)
56 cd04686 Nudix_Hydrolase_27 Mem 99.7 1.9E-16 4.2E-21 135.2 11.1 107 195-307 2-119 (131)
57 cd04666 Nudix_Hydrolase_9 Memb 99.7 3.7E-16 8.1E-21 132.2 12.0 108 196-310 3-118 (122)
58 cd04695 Nudix_Hydrolase_36 Mem 99.7 2.5E-16 5.4E-21 134.2 11.0 107 202-313 11-120 (131)
59 cd04667 Nudix_Hydrolase_10 Mem 99.7 4.9E-16 1.1E-20 128.6 11.9 100 201-312 7-106 (112)
60 PRK03759 isopentenyl-diphospha 99.7 3.7E-16 7.9E-21 141.3 11.7 116 194-312 35-157 (184)
61 cd02885 IPP_Isomerase Isopente 99.7 3.8E-16 8.3E-21 138.6 11.5 115 194-311 31-152 (165)
62 TIGR00052 nudix-type nucleosid 99.7 6.4E-16 1.4E-20 140.1 12.2 117 194-311 45-169 (185)
63 PRK15009 GDP-mannose pyrophosp 99.7 1.6E-15 3.5E-20 138.1 14.8 114 195-310 47-169 (191)
64 TIGR02150 IPP_isom_1 isopenten 99.7 7.6E-16 1.6E-20 136.0 11.0 114 194-312 28-147 (158)
65 COG2816 NPY1 NTP pyrophosphohy 99.6 4.9E-16 1.1E-20 146.9 9.3 132 169-308 119-252 (279)
66 PRK05379 bifunctional nicotina 99.6 2.1E-15 4.5E-20 148.9 12.9 114 190-307 200-322 (340)
67 cd04685 Nudix_Hydrolase_26 Mem 99.6 2.1E-15 4.6E-20 129.6 11.3 113 195-307 2-123 (133)
68 cd02883 Nudix_Hydrolase Nudix 99.6 6.3E-15 1.4E-19 120.9 13.4 113 195-311 2-116 (123)
69 PRK10707 putative NUDIX hydrol 99.6 8.8E-15 1.9E-19 133.2 12.9 114 194-308 31-147 (190)
70 cd04661 MRP_L46 Mitochondrial 99.6 7.8E-15 1.7E-19 125.6 9.0 98 203-307 11-120 (132)
71 cd03676 Nudix_hydrolase_3 Memb 99.6 2.8E-14 6.1E-19 128.3 11.1 110 198-308 39-159 (180)
72 TIGR02705 nudix_YtkD nucleosid 99.5 1E-13 2.3E-18 122.1 14.4 123 194-328 25-151 (156)
73 PRK08999 hypothetical protein; 99.5 1.4E-13 3.1E-18 133.8 14.6 113 196-313 8-120 (312)
74 KOG3084 NADH pyrophosphatase I 99.5 2.1E-15 4.6E-20 143.2 1.5 116 186-306 180-297 (345)
75 cd04665 Nudix_Hydrolase_8 Memb 99.5 1.7E-13 3.7E-18 115.5 12.6 100 196-304 3-102 (118)
76 PLN03143 nudix hydrolase; Prov 99.5 1.3E-13 2.8E-18 132.6 13.1 143 140-308 100-266 (291)
77 cd04674 Nudix_Hydrolase_16 Mem 99.5 5.6E-13 1.2E-17 112.4 13.9 56 196-254 7-62 (118)
78 cd04662 Nudix_Hydrolase_5 Memb 99.5 5.9E-13 1.3E-17 113.3 13.6 58 196-253 3-65 (126)
79 PLN02709 nudix hydrolase 99.4 1.1E-12 2.4E-17 121.6 12.7 104 205-308 51-156 (222)
80 PLN02552 isopentenyl-diphospha 99.4 1.6E-12 3.4E-17 122.6 12.0 118 189-308 53-204 (247)
81 cd04663 Nudix_Hydrolase_6 Memb 99.4 2.8E-12 6E-17 109.3 12.2 106 196-307 3-116 (126)
82 cd03670 ADPRase_NUDT9 ADP-ribo 99.4 4.9E-12 1.1E-16 114.6 12.8 119 197-325 38-184 (186)
83 PLN02791 Nudix hydrolase homol 99.3 1.7E-11 3.6E-16 131.1 11.4 113 195-307 34-158 (770)
84 COG0494 MutT NTP pyrophosphohy 99.3 6.2E-11 1.3E-15 99.1 12.7 112 196-311 14-138 (161)
85 KOG2839 Diadenosine and diphos 99.2 4.1E-11 8.9E-16 102.7 7.4 126 193-326 9-141 (145)
86 KOG3041 Nucleoside diphosphate 99.2 2.5E-10 5.4E-15 102.3 11.3 112 195-307 75-194 (225)
87 cd03431 DNA_Glycosylase_C DNA 99.0 3.4E-09 7.5E-14 87.2 11.9 110 198-321 7-116 (118)
88 KOG3069 Peroxisomal NUDIX hydr 98.8 1.1E-08 2.3E-13 94.4 7.7 114 194-307 44-163 (246)
89 COG1443 Idi Isopentenyldiphosp 98.8 1.2E-08 2.6E-13 90.2 7.6 117 195-312 35-158 (185)
90 PLN02839 nudix hydrolase 98.6 3.6E-07 7.9E-12 90.1 12.3 105 203-307 216-327 (372)
91 PF14815 NUDIX_4: NUDIX domain 98.6 1.9E-07 4E-12 77.6 8.7 106 198-311 2-107 (114)
92 COG4119 Predicted NTP pyrophos 98.5 6.6E-07 1.4E-11 75.2 9.0 125 194-322 4-150 (161)
93 KOG0142 Isopentenyl pyrophosph 97.6 7.2E-05 1.6E-09 67.8 5.1 115 195-310 54-186 (225)
94 COG4112 Predicted phosphoester 97.3 0.0016 3.4E-08 57.3 9.5 108 198-306 66-186 (203)
95 KOG2937 Decapping enzyme compl 97.1 7.4E-05 1.6E-09 72.3 -1.2 103 194-305 83-190 (348)
96 KOG4195 Transient receptor pot 97.0 0.00054 1.2E-08 63.0 3.4 39 206-249 140-178 (275)
97 PRK10880 adenine DNA glycosyla 96.6 0.012 2.7E-07 58.6 9.8 111 195-321 232-342 (350)
98 KOG4432 Uncharacterized NUDIX 95.2 0.078 1.7E-06 51.1 7.7 85 223-307 286-376 (405)
99 COG4111 Uncharacterized conser 94.4 0.22 4.8E-06 47.1 8.5 45 317-361 222-271 (322)
100 KOG4313 Thiamine pyrophosphoki 94.1 0.18 3.9E-06 47.5 7.2 98 205-304 148-255 (306)
101 KOG4432 Uncharacterized NUDIX 93.8 0.18 3.9E-06 48.7 6.7 66 194-260 27-118 (405)
102 PF13869 NUDIX_2: Nucleotide h 93.5 0.31 6.7E-06 44.4 7.4 48 198-251 49-98 (188)
103 PRK13910 DNA glycosylase MutY; 92.6 0.57 1.2E-05 45.6 8.4 91 198-323 191-281 (289)
104 KOG1689 mRNA cleavage factor I 91.9 0.33 7.2E-06 43.2 5.3 46 198-249 75-122 (221)
105 COG1194 MutY A/G-specific DNA 88.9 1.1 2.4E-05 44.5 6.6 110 187-321 229-338 (342)
106 KOG4548 Mitochondrial ribosoma 87.9 1.4 3E-05 41.8 6.2 95 207-307 141-247 (263)
107 TIGR01084 mutY A/G-specific ad 72.8 7.5 0.00016 37.5 5.6 32 196-228 230-261 (275)
108 PF03487 IL13: Interleukin-13; 42.5 22 0.00049 24.1 2.1 24 225-248 13-36 (43)
109 PF12860 PAS_7: PAS fold 40.5 14 0.0003 29.8 1.0 42 196-242 6-47 (115)
110 KOG2937 Decapping enzyme compl 37.6 7.8 0.00017 38.2 -1.0 75 175-253 217-296 (348)
111 PF14443 DBC1: DBC1 32.3 1.6E+02 0.0035 25.2 6.2 34 220-253 23-59 (126)
112 cd09232 Snurportin-1_C C-termi 28.8 24 0.00051 32.1 0.7 69 171-240 4-78 (186)
113 PF07809 RTP801_C: RTP801 C-te 21.6 52 0.0011 27.7 1.3 35 12-46 64-109 (116)
114 PF07026 DUF1317: Protein of u 20.7 2.5E+02 0.0054 20.8 4.5 19 220-238 21-39 (60)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-45 Score=346.38 Aligned_cols=263 Identities=51% Similarity=0.850 Sum_probs=250.8
Q ss_pred ccccccccccCCCcEEEcCCCCCCChHHHHHHHHhhhhcceecCeEEEEEEeeccccccchHHHhcceeeecCCcceeec
Q 017817 96 NLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLML 175 (365)
Q Consensus 96 ~~~~~~~~~D~~~gv~v~~~~~~~~~~~f~~~l~~sl~~W~~~~~r~vWl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l 175 (365)
+..++.|..|+||||+|++-..+.|+..|.+.|++|+..|+.+|++++|+++|...+++++.+++.||.|||++.+|+|+
T Consensus 18 ~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l 97 (295)
T KOG0648|consen 18 GSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVML 97 (295)
T ss_pred chhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceee
Confidence 36799999999999999997666799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee
Q 017817 176 TYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255 (365)
Q Consensus 176 ~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~ 255 (365)
++|+++.+.++|+++.|+++|+++|+|.+++||+++++++.....|.|++|+|.|++||++.++|+||++||||++.++.
T Consensus 98 ~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~ 177 (295)
T KOG0648|consen 98 TSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFV 177 (295)
T ss_pred eeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhh
Confidence 99999999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred EEEEEEeeccccCc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCC
Q 017817 256 EVIAFRHAHNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG 333 (365)
Q Consensus 256 ~ll~~~~~~~~~~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g 333 (365)
+++.+++.|...+. +.++|++|.++|.+.+++.+..|+.+++|||++++..++..+...+++.+...|++++...|.|
T Consensus 178 eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~~~~~~~~ 257 (295)
T KOG0648|consen 178 EVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNRLEEFYLG 257 (295)
T ss_pred hHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHHHhhhcCC
Confidence 99999999988877 8999999999999899999999999999999999999999888888889999999999999999
Q ss_pred CCCCCCccCcchhhHHHHHHhcCCC
Q 017817 334 LYPHQLVSAFDGQTSSLYYNDSDTQ 358 (365)
Q Consensus 334 ~~~~~l~~~f~~~~~~ly~~~~~~~ 358 (365)
+....++..++.+..+||+|..+.+
T Consensus 258 ~~~~~l~~~~~~k~~~ly~~~~~~~ 282 (295)
T KOG0648|consen 258 LTAIVLTTTYTGKESYLYYNEDHAN 282 (295)
T ss_pred ccceeccccccCcccccccccchhh
Confidence 9999999999999999999998743
No 2
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=1.1e-21 Score=165.76 Aligned_cols=125 Identities=58% Similarity=0.993 Sum_probs=99.5
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 271 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~ 271 (365)
|.++|+++|+|++++|||++++.. .++.|.+|||++++||++.+||+||++||||+++.....++....+...+...
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 77 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKS 77 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCce
Confidence 568899999999999999988532 57899999999999999999999999999999998888777655554445556
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID 321 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~ 321 (365)
+++|++.+......+..+++|+.+++|++++++.+.++.+. +.+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~--~~~~~~~ 125 (127)
T cd04670 78 DLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE--VNRLILD 125 (127)
T ss_pred eEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH--HHHHHHh
Confidence 67788777544444555678889999999999988877664 3444444
No 3
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=4.6e-19 Score=149.38 Aligned_cols=111 Identities=19% Similarity=0.306 Sum_probs=84.2
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc--Ccc
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA--FQK 270 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~--~~~ 270 (365)
+++|+++|++.+++|||++|... ...+.|.+|||++|+||++.+||+||++||||+++....+++........ ...
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 79 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHW 79 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeE
Confidence 57899999999899999998532 25789999999999999999999999999999999888887765433221 122
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~ 306 (365)
..++|++..... .....+++|+.+++|++++++++
T Consensus 80 ~~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~~l~~ 114 (125)
T cd04679 80 VAPVYLAENFSG-EPRLMEPDKLLELGWFALDALPQ 114 (125)
T ss_pred EEEEEEEeecCC-ccccCCCccccEEEEeCHHHCCc
Confidence 344555554321 12223457899999999999976
No 4
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.80 E-value=5.9e-19 Score=153.42 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=87.0
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeecc-c--
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHN-V-- 266 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~~~-~-- 266 (365)
+.++|+++|+|.+++|||+||... +.+|.|.+|||+++.||++.+||+||++||||+++... ++++...... .
T Consensus 11 p~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~ 88 (144)
T cd03430 11 PLVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNF 88 (144)
T ss_pred CeEEEEEEEEeCCCeEEEEEccCC--CCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccc
Confidence 457899999999999999999643 36899999999999999999999999999999998766 6666543211 1
Q ss_pred ---cC--ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 267 ---AF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 267 ---~~--~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.. ....++|.|... .+.+...++|+.+++|++++++.++...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 136 (144)
T cd03430 89 FGDDFSTHYVVLGYVLKLS--SNELLLPDEQHSEYQWLTSDELLADDDVH 136 (144)
T ss_pred ccCCCccEEEEEEEEEEEc--CCcccCCchhccEeEEecHHHHhcCCCcC
Confidence 11 122344555443 33444567899999999999999865444
No 5
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.80 E-value=3.3e-19 Score=154.97 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=90.6
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcc--eeeEEEEEEee------
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT--EFVEVIAFRHA------ 263 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~--~~~~ll~~~~~------ 263 (365)
+.++|++++++.+++|||++|.. .++.|++|||++|+||++.+||+||++||||+++ ....++.....
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF 81 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence 45789999999999999998853 3579999999999999999999999999999998 44333321100
Q ss_pred -------ccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817 264 -------HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL 327 (365)
Q Consensus 264 -------~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l 327 (365)
.+........+|.+.... ...+..+|+.+++|++++++.++...+. .+.+++.++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~E~~~~~W~~~~e~~~~~~~~~---~~~~l~~~~~~~ 146 (148)
T PRK09438 82 PHWRHRYAPGVTRNTEHWFCLALPH---ERPVVLTEHLAYQWLDAREAAALTKSWS---NAEAIEQLVIRL 146 (148)
T ss_pred hhhhhccccccCCceeEEEEEecCC---CCccccCcccceeeCCHHHHHHHhcChh---HHHHHHHHHHHh
Confidence 111122344566665421 2223345999999999999999876664 467777776654
No 6
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.80 E-value=8.9e-19 Score=155.04 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=84.2
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeecccc---
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVA--- 267 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~~--- 267 (365)
.++|+++|.+++++|||+||..+ +..|.|++|||+|++||++++||+||++||||+++.. ..+++........
T Consensus 17 ~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~ 94 (159)
T PRK15434 17 LISLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS 94 (159)
T ss_pred eEEEEEEEECCCCEEEEEEccCC--CCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccC
Confidence 46888999988899999999743 3679999999999999999999999999999998743 3555543222111
Q ss_pred ---Cc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 268 ---FQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 268 ---~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
+. ...++|.+.. ..+++.++++|+.+++|++++++.+....+
T Consensus 95 ~~~~~~~~i~~~f~~~~--~~g~~~~~~~E~~~~~W~~~~el~~~~~~~ 141 (159)
T PRK15434 95 GTDFTTHYVVLGFRLRV--AEEDLLLPDEQHDDYRWLTPDALLASDNVH 141 (159)
T ss_pred CCccceEEEEEEEEEEe--cCCcccCChHHeeEEEEEeHHHhhhccccC
Confidence 11 2223444443 345566667799999999999998864443
No 7
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.80 E-value=2.6e-18 Score=155.46 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=112.8
Q ss_pred hcceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeCCCeEE
Q 017817 133 IHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVL 208 (365)
Q Consensus 133 ~~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VL 208 (365)
..|+...++.| |+++...+..+++.. ...|.+. . . + +..+|.++.+++++++|
T Consensus 6 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~G~---~~~~~~v-----~-------~----~----~~~~v~v~~~~~~~~vl 62 (185)
T PRK11762 6 QKPEILNRETVAKSRLFRVESVDLEFSNGV---ERVYERM-----R-------P----S----GRGAVMIVPILDDDTLL 62 (185)
T ss_pred CCCEEeeEEEEEeCCEEEEEEEEEEcCCCC---EEEEEEE-----e-------c----C----CCCEEEEEEEeCCCEEE
Confidence 37999888888 999998888887732 1222221 0 0 0 11346677777888999
Q ss_pred EEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccccC
Q 017817 209 VVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKV 288 (365)
Q Consensus 209 Lvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~ 288 (365)
|+++ ++++...+.|+||||.+|+||++++||+||++||||+++..+..++.+...++......++|++..... .....
T Consensus 63 Lvrq-~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~-~~~~~ 140 (185)
T PRK11762 63 LIRE-YAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYP-ERLEG 140 (185)
T ss_pred EEEe-ecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEcccc-ccCCC
Confidence 9998 566678889999999999999999999999999999999999999877766665555555555543221 12234
Q ss_pred CccceeeEEEEcccccccCCCC
Q 017817 289 DDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 289 ~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
++.|..++.|+|++++.++...
T Consensus 141 ~e~E~i~~~~~~~~e~~~~~~~ 162 (185)
T PRK11762 141 DEPEPLEVVRWPLADLDELLAR 162 (185)
T ss_pred CCCceeEEEEEcHHHHHHHHHc
Confidence 5677789999999999876443
No 8
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.80 E-value=8e-19 Score=150.04 Aligned_cols=118 Identities=22% Similarity=0.181 Sum_probs=88.3
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 272 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~ 272 (365)
..+|+++++++++++||+++. +++..++.|.+|||++|.||++.+||+||++||||+.+.....++.............
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~-~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQY-RPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI 80 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEee-ecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence 457899999999999999874 3334678999999999999999999999999999999976666665443333222334
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.+|++...........++.|+.+++|++++|+.++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 81 HLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred EEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 455555433222145567899999999999998865543
No 9
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.79 E-value=1.5e-18 Score=153.03 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=91.7
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee--------
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA-------- 263 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~-------- 263 (365)
++++|+++++|.+++|||+++.. .++.|.+|||++++||++.+||.||++||||+++....+++....
T Consensus 7 ~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~ 82 (156)
T PRK00714 7 YRPNVGIILLNRQGQVFWGRRIG----QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPK 82 (156)
T ss_pred CCCeEEEEEEecCCEEEEEEEcC----CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcH
Confidence 45689999999999999999852 258999999999999999999999999999999887777664310
Q ss_pred ------ccccCccEEEEEEEEEecCCccccC---CccceeeEEEEcccccccCCCCcCCchHHH
Q 017817 264 ------HNVAFQKSDLFFICMLKPLSTEIKV---DDLEIKGAKWMPFMEFVKQPLIQGDCMFKK 318 (365)
Q Consensus 264 ------~~~~~~~~~~~f~~~l~~~~~~i~~---~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~ 318 (365)
.+...+...++|++........+.+ +++|+.+++|++++|++++..+....++++
T Consensus 83 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~ 146 (156)
T PRK00714 83 RLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRR 146 (156)
T ss_pred HHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHH
Confidence 1111233456788776543333333 346999999999999998766555333433
No 10
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.79 E-value=9.3e-19 Score=152.28 Aligned_cols=116 Identities=28% Similarity=0.425 Sum_probs=87.1
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----ecc--
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----AHN-- 265 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~-----~~~-- 265 (365)
+++|+++++|++++|||++|... ++.|.+|||++++||++.+||+||++||||+++....+++... ..+
T Consensus 3 ~~~v~~ii~~~~~~vLL~~r~~~----~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~ 78 (147)
T cd03671 3 RPNVGVVLFNEDGKVFVGRRIDT----PGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPE 78 (147)
T ss_pred CceEEEEEEeCCCEEEEEEEcCC----CCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhh
Confidence 46799999999999999999632 2899999999999999999999999999999987777766421 111
Q ss_pred ---c-----cCccEEEEEEEEEecCCccccCC---ccceeeEEEEcccccccCCCCcC
Q 017817 266 ---V-----AFQKSDLFFICMLKPLSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 266 ---~-----~~~~~~~~f~~~l~~~~~~i~~~---~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
. ..+...++|++........+.++ ++|+.+++|++++++.++..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~ 136 (147)
T cd03671 79 LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFK 136 (147)
T ss_pred hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhh
Confidence 0 11233456666665423333333 57999999999999999876654
No 11
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.79 E-value=1.4e-18 Score=149.78 Aligned_cols=117 Identities=18% Similarity=0.284 Sum_probs=80.8
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-E------eeccc-c
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-R------HAHNV-A 267 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-~------~~~~~-~ 267 (365)
+.+.+++.+++|||+||...+...+|.|++|||++|+||++.+||+||++||||+++....+... + ...+. .
T Consensus 6 ~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T PRK15472 6 IVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGR 85 (141)
T ss_pred EEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCC
Confidence 44555666899999998765556789999999999999999999999999999998754433211 0 01111 1
Q ss_pred CccE-EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817 268 FQKS-DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 313 (365)
Q Consensus 268 ~~~~-~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~ 313 (365)
.... .+++++........+.+ .+|+.+++|++++|+.++++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l~~~~~~ 131 (141)
T PRK15472 86 KEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHYDLNVAT 131 (141)
T ss_pred ceeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccccccHHH
Confidence 1111 22233333333344443 578999999999999999887653
No 12
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.2e-18 Score=145.13 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=82.4
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce-eeEEEEEEeeccccCccEEE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE-FVEVIAFRHAHNVAFQKSDL 273 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~-~~~ll~~~~~~~~~~~~~~~ 273 (365)
+|.++++++++++||+++.. .+.|.+|||++++||++++||+||++||||+.+. ....++..............
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~-----~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTY-----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVI 76 (120)
T ss_pred ceEEEEECCCCeEEEEEECC-----CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEE
Confidence 57889999999999999852 3389999999999999999999999999999998 77777765544333233334
Q ss_pred EEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817 274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
+|.|.. .......+++|+.+++|++++++++..
T Consensus 77 ~f~~~~--~~~~~~~~~~E~~~~~w~~~~~l~~~~ 109 (120)
T cd04680 77 VFRARA--DTQPVIRPSHEISEARFFPPDALPEPT 109 (120)
T ss_pred EEEecc--cCCCccCCcccEEEEEEECHHHCcccC
Confidence 444443 333334567899999999999998843
No 13
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.78 E-value=4.1e-18 Score=145.49 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=87.9
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
+.+++.++ +++||++|...+ ..+.|.+|||+++.||++.+||+||++||||+++....+++...............+
T Consensus 4 ~~~~i~~~-~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03427 4 TLCFIKDP-DKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF 80 (137)
T ss_pred EEEEEEEC-CEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence 44555554 899999996443 689999999999999999999999999999999988888876654333212223333
Q ss_pred EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
++.......... ..+|..+++|++++++.++++.+.+ +.+++.+++
T Consensus 81 ~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~ 126 (137)
T cd03427 81 VFLATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGD---REWLPLMLE 126 (137)
T ss_pred EEEECCcccccC-CCCccccceEEcHhhcccccCCCCc---HHHHHHHhC
Confidence 333333333333 3556678999999999988777654 566666653
No 14
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.78 E-value=3.4e-18 Score=148.19 Aligned_cols=115 Identities=24% Similarity=0.293 Sum_probs=85.1
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc-cCcc
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV-AFQK 270 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~-~~~~ 270 (365)
...+|+++|++.++++||++++.. +.++.|++|||++++||++++||+||++||||+++.....++.+..... ....
T Consensus 12 ~~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 89 (142)
T cd04700 12 EARAAGAVILNERNDVLLVQEKGG--PKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVLV 89 (142)
T ss_pred eeeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcEE
Confidence 346799999998899999987533 3689999999999999999999999999999999988877765432211 1112
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~ 309 (365)
..++|++........+. ..+|+.+++|++++++.++..
T Consensus 90 ~~~~f~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~~~~ 127 (142)
T cd04700 90 LRHVWLAEPEGQTLAPK-FTDEIAEASFFSREDVAQLYA 127 (142)
T ss_pred EEEEEEEEecCCccccC-CCCCEEEEEEECHHHhhhccc
Confidence 23455555532211222 347999999999999988754
No 15
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.78 E-value=2.8e-18 Score=144.04 Aligned_cols=114 Identities=23% Similarity=0.330 Sum_probs=83.9
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---cc---C
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN---VA---F 268 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~---~~---~ 268 (365)
+|.++++++ ++|||+++...+ .++.|.+|||++|+||++.+||+||++||||+++....+++...... .. .
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA 78 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence 577888876 899999996432 67999999999999999999999999999999988877776543221 11 1
Q ss_pred ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 269 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 269 ~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
....++|.+.............+|..+++|++++++.+....+
T Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~ 121 (128)
T cd04684 79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSP 121 (128)
T ss_pred cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCH
Confidence 2344556665542211113456788999999999998776555
No 16
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=4.3e-18 Score=144.09 Aligned_cols=113 Identities=28% Similarity=0.409 Sum_probs=86.7
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--ccCcc
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAFQK 270 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~--~~~~~ 270 (365)
+++|+++++|+++++||++|... ...+.|.+|||++++||++.+||+||++||||+++.....++...... .....
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHY 79 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC--CCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEE
Confidence 47899999999899999999643 368999999999999999999999999999999988877776544322 12224
Q ss_pred EEEEEEEEEecCCcccc-CCccceeeEEEEcccccccC
Q 017817 271 SDLFFICMLKPLSTEIK-VDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~-~~~~Ei~~~~Wv~leEl~~~ 307 (365)
..++|.|.......... .+.+|+.+++|++++++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 80 VTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 55666666643222222 14577889999999999986
No 17
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.78 E-value=2e-18 Score=145.50 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=86.8
Q ss_pred eEEEEEEEeCC---CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc----
Q 017817 194 VGVGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV---- 266 (365)
Q Consensus 194 v~V~~vVin~~---g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~---- 266 (365)
.++++++++.+ ++|||+++.. .+.|.+|||++++||++.+||.||++||||+++.....++.......
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~-----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 76 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR-----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGK 76 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCC-----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCC
Confidence 45778888865 8999999852 37999999999999999999999999999999988777765433222
Q ss_pred cCccEEEEEEEEEecCCccccC-CccceeeEEEEcccccccCCCCcCCchHHHHHHHH
Q 017817 267 AFQKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 323 (365)
Q Consensus 267 ~~~~~~~~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~ 323 (365)
.......+|.+... ...... +++|+.+++|++++++.++...+. .+.+++.+
T Consensus 77 ~~~~~~~~~~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~ 129 (131)
T cd03673 77 RVHKTVHWWLMRAL--GGEFTPQPDEEVDEVRWLPPDEARDRLSYPN---DRELLRAA 129 (131)
T ss_pred CcceEEEEEEEEEc--CCCcccCCCCcEEEEEEcCHHHHHHHcCCHh---HHHHHHHh
Confidence 22233444554443 333333 578899999999999988655442 35555554
No 18
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.78 E-value=3.6e-18 Score=147.06 Aligned_cols=121 Identities=23% Similarity=0.472 Sum_probs=85.2
Q ss_pred eEEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-----Eeecccc
Q 017817 194 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-----RHAHNVA 267 (365)
Q Consensus 194 v~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-----~~~~~~~ 267 (365)
.+|+++++|++ ++|||++|+ ..+.|.+|||++|+||++++||+||++||||+++......+. ....+..
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~-----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHR-----KLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEc-----CCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence 35788889887 999999985 257899999999999999999999999999998765554321 1111111
Q ss_pred -----Ccc--EEEEEEEEEecCCcccc-CCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817 268 -----FQK--SDLFFICMLKPLSTEIK-VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 324 (365)
Q Consensus 268 -----~~~--~~~~f~~~l~~~~~~i~-~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l 324 (365)
... ..+.|+|... .+... .+++|+.+++|++++++.++++... .++++..++
T Consensus 78 ~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~i~~~~ 137 (138)
T cd03674 78 PKRGVPGHLHLDLRFLAVAP--ADDVAPPKSDESDAVRWFPLDELASLELPED---VRRLVEKAL 137 (138)
T ss_pred CCCCCCCcEEEEEEEEEEcc--CccccCCCCCcccccEEEcHHHhhhccCCHH---HHHHHHHHh
Confidence 111 2334555543 23333 2567999999999999987766553 366666654
No 19
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4e-18 Score=142.12 Aligned_cols=115 Identities=26% Similarity=0.419 Sum_probs=83.0
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc----Cc
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ 269 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~----~~ 269 (365)
++|+++++++ +++||++|... .+++.|.+|||++++||++++||+||++||||+++.....++........ ..
T Consensus 1 ~~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd04673 1 VAVGAVVFRG-GRVLLVRRANP--PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVE 77 (122)
T ss_pred CcEEEEEEEC-CEEEEEEEcCC--CCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccc
Confidence 3577788875 79999998632 36789999999999999999999999999999998777777654433211 11
Q ss_pred cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
....++.+.......+. ...+|+.+++|++++++.++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~ 119 (122)
T cd04673 78 FHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALSLTES 119 (122)
T ss_pred eEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence 12222222223333333 3457889999999999999887664
No 20
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.77 E-value=3.7e-18 Score=143.63 Aligned_cols=120 Identities=31% Similarity=0.475 Sum_probs=92.2
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC---c
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF---Q 269 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~---~ 269 (365)
+++|++++++.++++||+++...+...++.|.+|||++++||++.+||+||+.||||+++.....+.......... +
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence 4679999999999999999975443467999999999999999999999999999999986666665443322222 2
Q ss_pred cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
....+|.+...........+..|+.+++|++++++.++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 124 (134)
T PF00293_consen 82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGR 124 (134)
T ss_dssp EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTH
T ss_pred EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcc
Confidence 4556666666544434555556999999999999999876653
No 21
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.7e-18 Score=143.98 Aligned_cols=114 Identities=24% Similarity=0.361 Sum_probs=82.2
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--ccCc-c
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAFQ-K 270 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~--~~~~-~ 270 (365)
++|+++|+|.++++||+|+.. +.+.|.+|||++++||++.+||+||++||||+++....++....... .... .
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA 78 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence 568899999889999998742 46899999999999999999999999999999988777665432211 1111 1
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
..+++.+........+. ..+|+.+++|++++++.++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~ 119 (125)
T cd04696 79 HFVLFDFFARTDGTEVT-PNEEIVEWEWVTPEEALDYPLNSF 119 (125)
T ss_pred EEEEEEEEEEecCCccc-CCcccceeEEECHHHHhcCCCCHH
Confidence 22222222222223343 346899999999999999887663
No 22
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.77 E-value=1.9e-18 Score=150.57 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=84.8
Q ss_pred EEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817 195 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 273 (365)
Q Consensus 195 ~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~ 273 (365)
.+++++++++ ++|||+|+. ..+.|+||||++|+||++.+||+||++||||+++........+. .....+....
T Consensus 3 ~~gaii~~~~~~~vLLvr~~-----~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~-~~~~~~~~~~ 76 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGW-----KSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYI-ELIIRGQNVK 76 (145)
T ss_pred eeEEEEEeCCCCEEEEEEec-----CCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceee-ecccCCcEEE
Confidence 4788888865 799999984 23489999999999999999999999999999986532111111 1111222334
Q ss_pred EEEEEEecCCccccC-CccceeeEEEEcccccccCCCCc-------CCchHHHHHHHHHHHHhc
Q 017817 274 FFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQ-------GDCMFKKVIDICIARLRK 329 (365)
Q Consensus 274 ~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~-------~~~~~~~il~~~l~~lr~ 329 (365)
+|++..........+ +.+|+.+++|++++++.++.... .-.+++.++....+++++
T Consensus 77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (145)
T cd03672 77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWINR 140 (145)
T ss_pred EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHHHH
Confidence 444433222222222 35789999999999999875443 223455566666655543
No 23
>PLN02325 nudix hydrolase
Probab=99.77 E-value=3.6e-18 Score=148.62 Aligned_cols=117 Identities=23% Similarity=0.338 Sum_probs=85.5
Q ss_pred CCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--
Q 017817 188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-- 265 (365)
Q Consensus 188 ~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~-- 265 (365)
.+++.+++|+++++++ ++|||+||... .+.+.|.+|||+++.||++.+||+||++||||+++....+++......
T Consensus 4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~--~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~ 80 (144)
T PLN02325 4 GEPIPRVAVVVFLLKG-NSVLLGRRRSS--IGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE 80 (144)
T ss_pred CCCCCeEEEEEEEEcC-CEEEEEEecCC--CCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence 4566778898888875 79999998643 256899999999999999999999999999999999888887643321
Q ss_pred --ccCccEEEEEEEEEecCCc-cccCCccceeeEEEEcccccccC
Q 017817 266 --VAFQKSDLFFICMLKPLST-EIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 266 --~~~~~~~~~f~~~l~~~~~-~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
.......++|.+....... ....+.+|..+++|+++++++..
T Consensus 81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 1122344555555432211 12234456788999999999874
No 24
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=2.8e-18 Score=144.21 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=79.1
Q ss_pred EEEEEEeCCCeEEEEeeecC-CCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYC-NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF 274 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~-~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~ 274 (365)
|+++++.++++|||++|... ...++|.|.+|||+++.||++++||+||++||||++++...+................+
T Consensus 3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T cd04682 3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHV 82 (122)
T ss_pred eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEE
Confidence 33444444599999998654 34578999999999999999999999999999999986433322221111122334455
Q ss_pred EEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817 275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
|.+...... ....+.+|+.+++|++++|+.+....
T Consensus 83 f~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~ 117 (122)
T cd04682 83 FVVPLTARE-DAILFGDEGQALRLMTVEEFLAHEDA 117 (122)
T ss_pred EEEEEecCC-CccccCchhheeecccHHHHhhcccc
Confidence 555543222 24456789999999999999776543
No 25
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=9e-18 Score=140.56 Aligned_cols=113 Identities=30% Similarity=0.461 Sum_probs=83.2
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee--c--cccC
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA--H--NVAF 268 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~--~--~~~~ 268 (365)
+++|.++++|+++++||++|. ..+.|.+|||++++||++++||+||++||||+++....+++.... + ....
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~-----~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 76 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRS-----DNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPN 76 (129)
T ss_pred cceEEEEEECCCCeEEEEEec-----CCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCC
Confidence 356888888988999999985 238999999999999999999999999999999877776543211 1 1111
Q ss_pred ----ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 269 ----QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 269 ----~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
....++|.+... +.....+.+|..+++|++++++.++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~el~~~~~~~~ 122 (129)
T cd04676 77 GDVRQYLDITFRCRVV--GGELRVGDDESLDVAWFDPDGLPPLLMHPS 122 (129)
T ss_pred CCcEEEEEEEEEEEee--CCeecCCCCceeEEEEEChhhCccccCCHh
Confidence 123344444443 233334567889999999999999877664
No 26
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=6.9e-18 Score=142.84 Aligned_cols=108 Identities=26% Similarity=0.437 Sum_probs=81.3
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc--cC--cc
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AF--QK 270 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~--~~--~~ 270 (365)
+|++++++.++++||++|...+ .++.|.+|||+++.||++.+||.||++||||+++.....++....... .. ..
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP--GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDT 80 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC--CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEE
Confidence 5778889988999999986432 578999999999999999999999999999999987777764422111 11 12
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~ 306 (365)
..++|+|... ......+.+|+.+++|++++++..
T Consensus 81 ~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~ 114 (130)
T cd04681 81 LDLFFVCQVD--DKPIVKAPDDVAELKWVVPQDIEL 114 (130)
T ss_pred EEEEEEEEeC--CCCCcCChHHhheeEEecHHHCCc
Confidence 3346666653 233344567999999999999853
No 27
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5.9e-18 Score=143.30 Aligned_cols=113 Identities=25% Similarity=0.369 Sum_probs=82.4
Q ss_pred cceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-c---
Q 017817 191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-V--- 266 (365)
Q Consensus 191 ~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~-~--- 266 (365)
.+.++|++++++.++++||++|. ..+.|.+|||++++||++.+||+||++||||+++.....++.+.... .
T Consensus 5 ~~~~~~~~~v~~~~~~vLL~~r~-----~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04677 5 LILVGAGVILLNEQGEVLLQKRS-----DTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKP 79 (132)
T ss_pred ccccceEEEEEeCCCCEEEEEec-----CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecC
Confidence 34577889999988999999885 23789999999999999999999999999999998877775432110 0
Q ss_pred cCc----cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817 267 AFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 267 ~~~----~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
..+ ...+++++.. ....+..+.+|+.+++|++++++.++...
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 80 NGDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred CCCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchhH
Confidence 011 1223333332 23334456788999999999999876443
No 28
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1e-17 Score=139.87 Aligned_cols=112 Identities=23% Similarity=0.376 Sum_probs=80.0
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeecccc-CccE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNVA-FQKS 271 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~--~~~ll~~~~~~~~~-~~~~ 271 (365)
+|.+++++ +++|||++|... ...++.|.+|||++++||++.+||+||++||||+++. ...+++..+..... ....
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~-~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 79 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANT-GYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRI 79 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCC-CCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEE
Confidence 46666665 589999998533 3358999999999999999999999999999999986 44555554433322 2334
Q ss_pred EEEEEEEEecCCccc-cCCccceeeEEEEcccccccCCCC
Q 017817 272 DLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i-~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
.++|.+... .+.. ..+++|+.+++|+++++++....+
T Consensus 80 ~~~f~~~~~--~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 117 (120)
T cd04683 80 GLFFTVRRW--SGEPRNCEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred EEEEEEEee--cCccccCCCCcEeeEEEEchHHCcchhcc
Confidence 455655542 2222 234578899999999999875443
No 29
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.2e-17 Score=140.54 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=81.6
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
|++++++++++|||++|... ..+.|.+|||+++.||++.+||+||++||||+++....+++.... .+...++|
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f 75 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYF 75 (121)
T ss_pred eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEE
Confidence 66788888799999998532 358999999999999999999999999999999977777665443 12345677
Q ss_pred EEEEecCCccccC---------CccceeeEEEEcccccccCCCCc
Q 017817 276 ICMLKPLSTEIKV---------DDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 276 ~~~l~~~~~~i~~---------~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.|.... +.+.. ++++..+++|+++++++.+++.+
T Consensus 76 ~~~~~~--g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 76 LARVIS--GKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred EEEEEC--CeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 776532 11111 13456789999999999988766
No 30
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2.1e-17 Score=139.10 Aligned_cols=110 Identities=29% Similarity=0.509 Sum_probs=83.8
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-----
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----- 267 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~----- 267 (365)
.++|.++|+++ +++||++++ ..+.|.+|||++++||++.+||+||++||||+.+....+++........
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~-----~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREK-----SDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQP 75 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEc-----CCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCc
Confidence 46788888876 899999985 2689999999999999999999999999999999777777765432211
Q ss_pred CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.....++|.|... ...+... +|+.+++|++++++.++.+..
T Consensus 76 ~~~~~~~f~~~~~--~~~~~~~-~E~~~~~W~~~~el~~l~~~~ 116 (123)
T cd04672 76 YQVYKLFFLCEIL--GGEFKPN-IETSEVGFFALDDLPPLSEKR 116 (123)
T ss_pred eEEEEEEEEEEec--CCcccCC-CceeeeEEECHHHCcccccCC
Confidence 1123445566553 2334433 789999999999999887654
No 31
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.75 E-value=7.6e-18 Score=148.45 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=86.7
Q ss_pred EEEEEEEeCC--CeEEEEeeecCCCCCCCceEeceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817 195 GVGGFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 271 (365)
Q Consensus 195 ~V~~vVin~~--g~VLLvrr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~ 271 (365)
+|.+++.+.+ ++|||+||......++|.|++|||++|+| |++.+||+||++||||+++....+++.........+..
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 83 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV 83 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence 4556666654 68999999755445789999999999999 99999999999999999998888877654433333444
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~ 309 (365)
...|++..... ..+.++++|+.+++|++++++.+...
T Consensus 84 v~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~ 120 (157)
T cd03426 84 VTPVVGLVPPP-LPLVLNPDEVAEVFEVPLSFLLDPAN 120 (157)
T ss_pred EEEEEEEECCC-CCCCCCHHHhheeEEEcHHHHhCcCC
Confidence 45555655332 34556677999999999999988643
No 32
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=7.7e-18 Score=142.69 Aligned_cols=112 Identities=19% Similarity=0.333 Sum_probs=84.6
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 273 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~ 273 (365)
++.++++|.+++|||++|...+...+|.|++ |||++++||++.+||+||++||||+.+.....++.+............
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK 81 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence 4778899999999999886555457899999 699999999999999999999999999866666654433322222233
Q ss_pred EEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817 274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309 (365)
Q Consensus 274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~ 309 (365)
+|.+.. ...+.++++|+.+++|++++++.++..
T Consensus 82 ~f~~~~---~~~~~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 82 VFSCVY---DGPLKLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred EEEEEE---CCCCCCCHhHhhheEEcCHHHHHHHhh
Confidence 444443 234556678999999999999987543
No 33
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.75 E-value=2.9e-17 Score=139.86 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=85.7
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc--cEE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--KSD 272 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~--~~~ 272 (365)
+|++++. .++++||++|... ..+.|.+|||++++||++.+||.||++||||+++....+++.........+ ...
T Consensus 2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 77 (134)
T cd03675 2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLR 77 (134)
T ss_pred eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEE
Confidence 4555554 5689999998533 568999999999999999999999999999999987777765433222112 223
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
++|.+..... ......++|+.++.|++++++.++..........+.+..++.
T Consensus 78 ~~f~~~~~~~-~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~ 129 (134)
T cd03675 78 FAFAAELLEH-LPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLA 129 (134)
T ss_pred EEEEEEECCC-CCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHh
Confidence 3455554322 111133568999999999999988632222244555665553
No 34
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.1e-17 Score=138.34 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=77.0
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
|+++++++ ++|||++|...+...++.|.+|||++++||++++||+||++||||+++.....+........ ......+|
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~ 80 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY 80 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence 44556654 89999998543334789999999999999999999999999999999765565554433222 22333445
Q ss_pred EEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817 276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
.+... .+.+ ..+|+.+++|+++++++.++
T Consensus 81 ~~~~~--~~~~--~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 81 VVTFW--QGEI--PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred EEEEe--cCCC--CcccccccEEcCHHHcchhh
Confidence 55432 2333 34789999999999998654
No 35
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.2e-17 Score=140.37 Aligned_cols=114 Identities=24% Similarity=0.314 Sum_probs=81.0
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC--ccE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF--QKS 271 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~--~~~ 271 (365)
++|+++|.++++++||++|...+...+|.|++|||++++||++.+||+||++||||+++....++.....+.... ...
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI 81 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence 467788888879999999865443468999999999999999999999999999999987766643322332221 222
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
.++|.+.. ... ...+++|..+++|++++++..+.++
T Consensus 82 ~~~~~~~~--~~~-~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 82 YLVFVCEA--LSG-AVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEeee--cCC-cccCChhheEEEEecHHHhhhhhcc
Confidence 23333322 222 2234568889999999998665544
No 36
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.74 E-value=6.4e-17 Score=137.76 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=86.5
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
+.+++++.+++|||+||... ..+.|.|.+|||++++||++.+||+||++||||+++....+++..............+|
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~-~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAH-SDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW 84 (135)
T ss_pred EEEEEEecCCEEEEEEccCC-CCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence 44455567789999998533 34789999999999999999999999999999999877666654433333322222333
Q ss_pred EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817 276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 326 (365)
Q Consensus 276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~ 326 (365)
.+... .+++ ...|..+++|++++++.+++++... +.+++.+++.
T Consensus 85 ~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~ 128 (135)
T PRK10546 85 HVPDF--HGEL--QAHEHQALVWCTPEEALRYPLAPAD---IPLLEAFMAL 128 (135)
T ss_pred EEEEe--cCcc--cccccceeEEcCHHHcccCCCCcCc---HHHHHHHHHh
Confidence 33322 1222 2346778999999999999887765 5666666554
No 37
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=4e-17 Score=138.21 Aligned_cols=108 Identities=30% Similarity=0.453 Sum_probs=80.2
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
|++++++.+++|||+++...+ .++.|.+|||++|.||++.+||+||++||||+++....+++..... .....++|
T Consensus 3 ~~~vv~~~~~~vLl~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~f 77 (123)
T cd04671 3 VAAVILNNQGEVLLIQEAKRS--CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFVF 77 (123)
T ss_pred EEEEEEcCCCEEEEEEecCCC--CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEEE
Confidence 678888889999999985332 5789999999999999999999999999999999888777654321 22334455
Q ss_pred EEEEecCCccccC---CccceeeEEEEcccccccCCCCc
Q 017817 276 ICMLKPLSTEIKV---DDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 276 ~~~l~~~~~~i~~---~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.|.... +.+.. ++.|+.+++|++++++ .+++.+
T Consensus 78 ~a~~~~--g~~~~~~~~~~e~~~~~W~~~~el-~~~~~~ 113 (123)
T cd04671 78 TGNITG--GDLKTEKEADSESLQARWYSNKDL-PLPLRA 113 (123)
T ss_pred EEEEeC--CeEccCCCCCcceEEEEEECHHHC-CCccch
Confidence 555432 22221 3467889999999999 344433
No 38
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.73 E-value=4.2e-17 Score=142.24 Aligned_cols=116 Identities=28% Similarity=0.489 Sum_probs=83.5
Q ss_pred CcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-C
Q 017817 190 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-F 268 (365)
Q Consensus 190 ~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~-~ 268 (365)
..+.++|++++...+ +|||++|+..+ ..|.|.+|||++|.||++++||+||++||||+++...++++.+...... .
T Consensus 7 ~~p~~~v~~~i~~~~-~iLLvrR~~~p--~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r 83 (145)
T COG1051 7 RTPLVAVGALIVRNG-RILLVRRANEP--GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPR 83 (145)
T ss_pred CCcceeeeEEEEeCC-EEEEEEecCCC--CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCc
Confidence 344577877777554 99999996443 6899999999999999999999999999999999999999887665432 2
Q ss_pred ccEEEEEEEEEecCCccccC-CccceeeEEEEcccccccCCC
Q 017817 269 QKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPL 309 (365)
Q Consensus 269 ~~~~~~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~ 309 (365)
+....+++..... .++... +.++...+.|+++++++.+..
T Consensus 84 ~~~v~~~~~~~~~-~g~~~~~~~~d~~~~~~~~~~~l~~~~~ 124 (145)
T COG1051 84 GHHVSFLFFAAEP-EGELLAGDGDDAAEVGWFPLDELPELPL 124 (145)
T ss_pred eeEEEEEEEEEec-CCCcccCChhhHhhcceecHhHcccccc
Confidence 2222222222221 232322 334778899999999998544
No 39
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=5.4e-17 Score=137.39 Aligned_cols=114 Identities=25% Similarity=0.404 Sum_probs=79.4
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--------
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-------- 265 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~-------- 265 (365)
++|+++|++ +++|||+++.. + ..+.|.+|||++++||++++||+||++||||+++....++.......
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~-~--~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHD-D--GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELP 77 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEc-C--CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCC
Confidence 457777776 57999999852 2 35789999999999999999999999999999987666554432221
Q ss_pred ccCccEEEEEEEEEecCCc-ccc-CCccceeeEEEEcccccccCCCCc
Q 017817 266 VAFQKSDLFFICMLKPLST-EIK-VDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 266 ~~~~~~~~~f~~~l~~~~~-~i~-~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.......++|.|....... ... ..+.|..+++|++++++.++++.+
T Consensus 78 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 78 GHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred CceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 1122334556565532211 111 123456789999999999987765
No 40
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=6.7e-17 Score=136.34 Aligned_cols=110 Identities=18% Similarity=0.311 Sum_probs=80.7
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc----ccCcc
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN----VAFQK 270 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~----~~~~~ 270 (365)
.|.++++++ ++|||+++. ..+.|.+|||++++||++.+||+||++||||+++.....++...... .....
T Consensus 3 ~v~~vi~~~-~~vLl~~~~-----~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04688 3 RAAAIIIHN-GKLLVQKNP-----DETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHE 76 (126)
T ss_pred EEEEEEEEC-CEEEEEEeC-----CCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEE
Confidence 356666654 499999875 26799999999999999999999999999999998888776543211 11223
Q ss_pred EEEEEEEEEecCCcccc-------CCccceeeEEEEcccccccCCCCcC
Q 017817 271 SDLFFICMLKPLSTEIK-------VDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~-------~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
..++|.|... ..... .+++|+.+++|++++++..+++.+.
T Consensus 77 ~~~~f~~~~~--~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p~ 123 (126)
T cd04688 77 IEFYYLVTLL--DESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPE 123 (126)
T ss_pred EEEEEEEEeC--CCcccccccceeccCCCEEEEEEeeHHHcccCccCCc
Confidence 3456666553 22222 2457899999999999998877653
No 41
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.73 E-value=5.4e-17 Score=154.10 Aligned_cols=131 Identities=22% Similarity=0.297 Sum_probs=96.5
Q ss_pred CCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 017817 184 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA 263 (365)
Q Consensus 184 ~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~ 263 (365)
|....|+.+.++|.++|. +++++||+++.. . ..+.|.+|||++|+||++++||+||++||||+++..+.+++....
T Consensus 123 c~~~~yp~~~paViv~V~-~~~~iLL~rr~~-~--~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~ 198 (256)
T PRK00241 123 CRERYYPRIAPCIIVAVR-RGDEILLARHPR-H--RNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPW 198 (256)
T ss_pred CCCEECCCCCCEEEEEEE-eCCEEEEEEccC-C--CCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEee
Confidence 445566667777655554 558999999853 2 278999999999999999999999999999999988887765322
Q ss_pred ccccCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 264 HNVAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 264 ~~~~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
.+. ...+.|.+.. .++++.++++|+.+++|++++|++.++. ...+.+++|+.+++
T Consensus 199 ---~~p~~lm~~f~a~~--~~~~~~~~~~Ei~~a~W~~~del~~lp~--~~sia~~li~~~~~ 254 (256)
T PRK00241 199 ---PFPHSLMLGFHADY--DSGEIVFDPKEIADAQWFRYDELPLLPP--SGTIARRLIEDTVA 254 (256)
T ss_pred ---cCCCeEEEEEEEEe--cCCcccCCcccEEEEEEECHHHCcccCC--chHHHHHHHHHHHH
Confidence 222 2334555554 3455677778999999999999987654 33477777777654
No 42
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.73 E-value=5.3e-17 Score=146.46 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=89.3
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 272 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~ 272 (365)
.++.++|+|++++|||++|...+...+|.|. +|||++++||++.+||+||++||||+.+.....++.+...........
T Consensus 38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 117 (180)
T PRK15393 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWG 117 (180)
T ss_pred EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEE
Confidence 4567888999999999888644444567775 799999999999999999999999998765555554333222222223
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccCC--CCcCCchHHHHHHHHHHHHhc
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP--LIQGDCMFKKVIDICIARLRK 329 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~--~~~~~~~~~~il~~~l~~lr~ 329 (365)
.+|.+.. .....++++|+.+++|++++++.++. +.+. . ...+..++.+.++
T Consensus 118 ~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~--~-~~~l~~~l~~~~~ 170 (180)
T PRK15393 118 ALFSCVS---HGPFALQEEEVSEVCWMTPEEITARCDEFTPD--S-LKALALWLTRNAK 170 (180)
T ss_pred EEEEEEe---CCCCCCChHHeeEEEECCHHHHhhhhhhcCcc--H-HHHHHHHHHhhcc
Confidence 3444433 24455677899999999999999873 4332 2 3445555555443
No 43
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.72 E-value=1.2e-16 Score=146.67 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=89.9
Q ss_pred EEEEEEEeC-CCeEEEEeeecCCCCC-----CCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC
Q 017817 195 GVGGFVIND-NNEVLVVQEKYCNPAF-----AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF 268 (365)
Q Consensus 195 ~V~~vVin~-~g~VLLvrr~~~~~~~-----~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~ 268 (365)
+|+++++++ +++|+|+++ ++++.. +..|++|+|.+|+||++++||+||+.||||+.+..+..+..+...++..
T Consensus 51 ~V~il~~~~~~~~vlLvrQ-yR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~ 129 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQ-IRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGT 129 (202)
T ss_pred eEEEEEEECCCCEEEEEEe-eecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcC
Confidence 477777876 479999998 677653 3689999999999999999999999999999998888887777777766
Q ss_pred ccEEEEEEEEEec---CCccccCCccceeeEEEEcccccccCCCC
Q 017817 269 QKSDLFFICMLKP---LSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 269 ~~~~~~f~~~l~~---~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
....++|++.... .......+++|..++.|+|++++.++...
T Consensus 130 ~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~ 174 (202)
T PRK10729 130 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE 174 (202)
T ss_pred ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHc
Confidence 6666777766421 11112346678889999999999887543
No 44
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.72 E-value=4.3e-17 Score=139.29 Aligned_cols=106 Identities=26% Similarity=0.361 Sum_probs=80.4
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF 274 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~ 274 (365)
+|.+++.++++++||++|.. . ..+.|.+|||+++.||++++||+||++||||+++.....++..... . .....++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~-~--~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~-~-~~~~~~~ 76 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPR-F--PPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWP-F-PSSLMLG 76 (131)
T ss_pred eEEEEEEeCCCEEEEEEecC-C--CCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCC-C-CceEEEE
Confidence 36667777779999999853 2 2689999999999999999999999999999999877776643221 1 1233455
Q ss_pred EEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817 275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
|++... ...+..+++|+.+++|++++++.++
T Consensus 77 f~~~~~--~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 77 FTAEAD--SGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEc--CCcccCCchhhhccEeecHHHHhhc
Confidence 555543 3455566789999999999998874
No 45
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=2e-17 Score=139.85 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=78.8
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeEE--EEEEeeccccCccE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEV--IAFRHAHNVAFQKS 271 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~l--l~~~~~~~~~~~~~ 271 (365)
.|.+++++++++|||++|...+...+|.|++| ||++++||++ +||+||++||||+++....+ +..+..... +..
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~--~~~ 78 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE--GFD 78 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC--CeE
Confidence 36788899999999999875554578999998 8999999999 99999999999999764332 332222111 222
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~ 309 (365)
..++ +........+.++.+|+.+++|++++++.++..
T Consensus 79 ~~~~-~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 115 (127)
T cd04693 79 DYYL-FYADVEIGKLILQKEEVDEVKFVSKDEIDGLIG 115 (127)
T ss_pred EEEE-EEecCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence 2222 222222344555678999999999999987643
No 46
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.72 E-value=1.9e-16 Score=132.85 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=84.2
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
+.++++++++++||+||... +.++|.|+||||++++||++.+||+||++||||+++.....++..............+|
T Consensus 7 ~~~ii~~~~~~vll~rR~~~-~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T PRK10776 7 AVGIIRNPNNEIFITRRAAD-AHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFW 85 (129)
T ss_pred EEEEEECCCCEEEEEEecCC-CCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEE
Confidence 44566777889999998644 34789999999999999999999999999999998766555554433332222223334
Q ss_pred EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHH
Q 017817 276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 323 (365)
Q Consensus 276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~ 323 (365)
.+... ... +...|..+++|++++++...+++... +++++.+
T Consensus 86 ~~~~~--~~~--~~~~e~~~~~W~~~~~l~~~~~p~~~---~~~~~~~ 126 (129)
T PRK10776 86 LVESW--EGE--PWGKEGQPGRWVSQVALNADEFPPAN---EPIIAKL 126 (129)
T ss_pred EEEEE--CCc--cCCccCCccEEecHHHCccCCCCccc---HHHHHHH
Confidence 44322 122 22456778899999999998877654 5555544
No 47
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.1e-16 Score=133.08 Aligned_cols=107 Identities=21% Similarity=0.363 Sum_probs=78.6
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeecccc-C--cc
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVA-F--QK 270 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~~-~--~~ 270 (365)
+++++++.++++||++++ ..+.|.+|||++++||++++||+||++||||+++.. ...++.+...... . ..
T Consensus 3 ~~~~v~~~~~~vLl~~r~-----~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd04690 3 AAALILVRDGRVLLVRKR-----GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV 77 (118)
T ss_pred EEEEEEecCCeEEEEEEC-----CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEE
Confidence 556777788899999885 357899999999999999999999999999999877 7777655432211 1 12
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
...+|.+... . .+. ..+|+.+++|++++++....+.+
T Consensus 78 ~~~~f~~~~~--~-~~~-~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 78 RATVYVAELT--G-EPV-PAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred EEEEEEEccc--C-CcC-CCchhhccEEecHHHccccccCc
Confidence 3344444432 2 333 35688999999999997766654
No 48
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.71 E-value=7e-17 Score=136.77 Aligned_cols=112 Identities=25% Similarity=0.284 Sum_probs=82.4
Q ss_pred EEEEEEEeC--CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----cccc-
Q 017817 195 GVGGFVIND--NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA----HNVA- 267 (365)
Q Consensus 195 ~V~~vVin~--~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~----~~~~- 267 (365)
.|.+++++. +++|||++|... .++.|.+|||+++.||++.+||+||++||||+.+.....+..... ....
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN 79 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC
Confidence 467888887 899999999643 589999999999999999999999999999999876666654331 1111
Q ss_pred -CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 268 -FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 268 -~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
......+|++.+.. ......++|+.+++|++++++.++...+
T Consensus 80 ~~~~~~~~f~~~~~~--~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 122 (129)
T cd04664 80 GRVWTEHPFAFHLPS--DAVVTLDWEHDAFEWVPPEEAAALLLWE 122 (129)
T ss_pred ceEEEEeEEEEEcCC--CCcccCCccccccEecCHHHHHHHHcCh
Confidence 11234555555432 2222345788999999999998876554
No 49
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.71 E-value=1.5e-16 Score=134.02 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=75.9
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc----Cc
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ 269 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~----~~ 269 (365)
+.|.++++ .++++||+++. ..+.|.+|||++|+||++.+||+||++||||+++....+++........ ..
T Consensus 2 ~~~~~vi~-~~~~vLlv~~~-----~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 75 (125)
T cd04689 2 LRARAIVR-AGNKVLLARVI-----GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTH 75 (125)
T ss_pred eEEEEEEE-eCCEEEEEEec-----CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEE
Confidence 35667777 46799999985 3578999999999999999999999999999999888877654432211 11
Q ss_pred cEEEEEEEEEecCCcc-ccCCccceeeEEEEccccccc
Q 017817 270 KSDLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEFVK 306 (365)
Q Consensus 270 ~~~~~f~~~l~~~~~~-i~~~~~Ei~~~~Wv~leEl~~ 306 (365)
...++|.+........ ....++|+.+++|++++++..
T Consensus 76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04689 76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSL 113 (125)
T ss_pred EEEEEEEEEcccccccCCccCccceEEEEEccHHHccc
Confidence 2234555544321111 122356789999999999754
No 50
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.70 E-value=2.3e-16 Score=134.21 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=82.3
Q ss_pred CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC
Q 017817 189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF 268 (365)
Q Consensus 189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~ 268 (365)
++.+.++|+++++++ ++|||++|...+ ..+.|.+|||++|+||++++||+||++||||+++....+++.+... . .
T Consensus 9 ~~~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~-~-~ 83 (130)
T cd04511 9 YQNPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP-H-I 83 (130)
T ss_pred CCCCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC-C-c
Confidence 344567777777755 899999986432 6789999999999999999999999999999998776666655432 1 2
Q ss_pred ccEEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817 269 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306 (365)
Q Consensus 269 ~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~ 306 (365)
....++|.+... ...+. ...|..+++|+++++++.
T Consensus 84 ~~~~~~f~~~~~--~~~~~-~~~e~~~~~~~~~~~l~~ 118 (130)
T cd04511 84 SQVYMFYRARLL--DLDFA-PGPESLEVRLFTEEEIPW 118 (130)
T ss_pred eEEEEEEEEEEc--CCccc-CCcchhceEEECHHHCCc
Confidence 334566666653 23333 346788999999999974
No 51
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=6.5e-17 Score=140.08 Aligned_cols=114 Identities=20% Similarity=0.337 Sum_probs=82.1
Q ss_pred EEEEEEEeCC---CeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccc--
Q 017817 195 GVGGFVINDN---NEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNV-- 266 (365)
Q Consensus 195 ~V~~vVin~~---g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~-- 266 (365)
+|.++|+|.+ +++|+++|.......+|.|++ |||++++||++++||+||++||||+.++. +..++.......
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~ 83 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI 83 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence 3778899877 899999987554567899999 59999999999999999999999998643 444444332221
Q ss_pred -c--CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817 267 -A--FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 267 -~--~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
. ......+|++........+.++++|+.+++|++++++.++.
T Consensus 84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred CCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence 1 11233455565532223445667899999999999997753
No 52
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.70 E-value=3.2e-16 Score=129.85 Aligned_cols=113 Identities=27% Similarity=0.422 Sum_probs=83.6
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
+.+++.++++++||++|+.++ ..+|.|.+|||+++.+|++.+||.||+.||||+++.....++..............+|
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGK-HLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF 82 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCC-CCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence 445566777999999986444 5799999999999999999999999999999999877666665444333333333444
Q ss_pred EEEEecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817 276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 313 (365)
Q Consensus 276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~ 313 (365)
.+... .... ...|..++.|++++++.+++++..+
T Consensus 83 ~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~~ 116 (124)
T cd03425 83 LVELW--SGEP--QLLEHQELRWVPPEELDDLDFPPAD 116 (124)
T ss_pred EEeee--CCCc--ccccCceEEEeeHHHcccCCCCccc
Confidence 44332 2222 2457789999999999999888765
No 53
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=6.2e-16 Score=130.05 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=84.9
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF 274 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~ 274 (365)
.++++++++++++||++|... ..+.|.|++|||.+++||++.+|++||+.||||+++.....++...+..........+
T Consensus 6 ~~~~ii~~~~~~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~ 84 (128)
T TIGR00586 6 IAVGIIRNENGEIIITRRADG-HMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFW 84 (128)
T ss_pred EEEEEEECCCCEEEEEEEeCC-CCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEE
Confidence 355566678889999999644 3578999999999999999999999999999999987666665544433333333334
Q ss_pred EEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817 275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID 321 (365)
Q Consensus 275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~ 321 (365)
|.+... +... ...+..+++|++++++.+++++... +++++
T Consensus 85 ~~~~~~--~~~~--~~~~~~~~~W~~~~~l~~~~~p~~~---~~~~~ 124 (128)
T TIGR00586 85 LLERWE--GGPP--GKEGQPEEWWVLVGLLADDFFPAAN---PVIIK 124 (128)
T ss_pred EEEEEc--CCCc--CcccccccEEeCHHHCCccCCCCCC---HHHHH
Confidence 444432 2221 2345667899999999999888754 45554
No 54
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.70 E-value=1.1e-16 Score=135.26 Aligned_cols=118 Identities=27% Similarity=0.529 Sum_probs=82.8
Q ss_pred EEEEEEEeCCC---eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe--ec-c-cc
Q 017817 195 GVGGFVINDNN---EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH--AH-N-VA 267 (365)
Q Consensus 195 ~V~~vVin~~g---~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~--~~-~-~~ 267 (365)
++++++++.++ ++||++++ . +.|.+|||++++||++.+||+||++||||+++....+++.+. .. . ..
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~-----~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 77 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQAS-----Y-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG 77 (130)
T ss_pred EEEEEEEEecCCCceEEEEEcc-----C-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC
Confidence 46677776443 79999985 2 899999999999999999999999999999988766642111 11 1 11
Q ss_pred CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHH
Q 017817 268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 323 (365)
Q Consensus 268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~ 323 (365)
......+|++.... ...+..+ +|+.+++|++++++.++..... ++.+++.+
T Consensus 78 ~~~~~~~f~~~~~~-~~~~~~~-~E~~~~~W~~~~e~~~~~~~~~---~~~~~~~~ 128 (130)
T cd03428 78 KLKTVTYFLAELRP-DVEVKLS-EEHQDYRWLPYEEALKLLTYED---LKAVLDKA 128 (130)
T ss_pred cceEEEEEEEEeCC-CCccccc-cceeeEEeecHHHHHHHcCchh---HHHHHHHh
Confidence 23445666666542 2334444 7899999999999998755442 35555544
No 55
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=2.3e-16 Score=137.32 Aligned_cols=114 Identities=18% Similarity=0.348 Sum_probs=81.7
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee----EEEEEEeecc----
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV----EVIAFRHAHN---- 265 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~----~ll~~~~~~~---- 265 (365)
++|.++++|.++++||++|...+..++|.|.+|||++++||++.+||+||++||||+.+... .+++......
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 46778889999999999997554457899999999999999999999999999999998653 4555432211
Q ss_pred --cc--CccEEEEEEEEEecC----CccccCCccceeeEEEEcccccccC
Q 017817 266 --VA--FQKSDLFFICMLKPL----STEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 266 --~~--~~~~~~~f~~~l~~~----~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
.. ......|+++..... ...+.++++|+.+++|++++++.++
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 11 122333333332211 1133455689999999999998765
No 56
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.9e-16 Score=135.18 Aligned_cols=107 Identities=21% Similarity=0.455 Sum_probs=75.0
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcc-eeeEEEEEEee---ccc----
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT-EFVEVIAFRHA---HNV---- 266 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~-~~~~ll~~~~~---~~~---- 266 (365)
+|+++|+++ ++|||+++. ..+.|.+|||++|+||++.+||+||++||||+.+ .....++.... ...
T Consensus 2 ~~~~ii~~~-~~vLLv~~~-----~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~ 75 (131)
T cd04686 2 AVRAIILQG-DKILLLYTK-----RYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD 75 (131)
T ss_pred cEEEEEEEC-CEEEEEEEc-----CCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence 467777764 799999985 2368999999999999999999999999999987 44555554421 111
Q ss_pred cCccEEEEEEEEEecCCccccCCccce---eeEEEEcccccccC
Q 017817 267 AFQKSDLFFICMLKPLSTEIKVDDLEI---KGAKWMPFMEFVKQ 307 (365)
Q Consensus 267 ~~~~~~~~f~~~l~~~~~~i~~~~~Ei---~~~~Wv~leEl~~~ 307 (365)
.+....++|+|...........++.|. ..++|+|++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 122345677777654333344443333 36899999998763
No 57
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.68 E-value=3.7e-16 Score=132.22 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=77.7
Q ss_pred EEEEEEeCC---CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeecccc----
Q 017817 196 VGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV-EVIAFRHAHNVA---- 267 (365)
Q Consensus 196 V~~vVin~~---g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~-~ll~~~~~~~~~---- 267 (365)
+++++++.+ +++||+++. ..+.|.+|||++|+||++.+||+||++||||+++... ..++.+......
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~-----~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~ 77 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSR-----RTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRP 77 (122)
T ss_pred EEEEEEEEcCCceEEEEEEec-----CCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCC
Confidence 556666643 689999885 2389999999999999999999999999999998777 777765443322
Q ss_pred CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817 268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
......+|.+..... ....++.|+.+++|++++++.++...
T Consensus 78 ~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 78 PRCEVAVFPLEVTEE--LDEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred ceEEEEEEEEEEecc--ccCCcccCceEEEEecHHHHHHhcCC
Confidence 123445555554322 22223456789999999999876543
No 58
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=2.5e-16 Score=134.20 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=74.2
Q ss_pred eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEE---EEeeccccCccEEEEEEEE
Q 017817 202 NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA---FRHAHNVAFQKSDLFFICM 278 (365)
Q Consensus 202 n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~---~~~~~~~~~~~~~~~f~~~ 278 (365)
+.++++||++|... .+|.|.+|||++++||++.+||+||++||||+++....... ..............+|++.
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 87 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF 87 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence 46689999999633 47899999999999999999999999999999986543221 1112111111223344444
Q ss_pred EecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817 279 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 313 (365)
Q Consensus 279 l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~ 313 (365)
... ...+. .++|+.+++|++++++.++...+.+
T Consensus 88 ~~~-~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~~ 120 (131)
T cd04695 88 VPP-HQEVV-LNHEHTEYRWCSFAEALELAPFPGQ 120 (131)
T ss_pred ecC-CCccc-cCchhcccEecCHHHHHHhcCChhH
Confidence 432 22233 3478999999999999988776654
No 59
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=4.9e-16 Score=128.64 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=75.0
Q ss_pred EeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEe
Q 017817 201 INDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLK 280 (365)
Q Consensus 201 in~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~ 280 (365)
...++++||+++. .+.|.+|||++++||++.+||.||++||||+++.....+..+.. ......+|.+...
T Consensus 7 ~~~~~~vLlv~r~------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~ 76 (112)
T cd04667 7 CRRGGRVLLVRKS------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASVP 76 (112)
T ss_pred EecCCEEEEEEcC------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEcC
Confidence 3456899999984 37999999999999999999999999999999876666654322 1223445555443
Q ss_pred cCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 281 PLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 281 ~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
........+|+.+++|++++++.++..+..
T Consensus 77 --~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 106 (112)
T cd04667 77 --PSAQPKPSNEIADCRWLSLDALGDLNASAA 106 (112)
T ss_pred --CcCCCCCchheeEEEEecHHHhhhcccchh
Confidence 222233467899999999999998877654
No 60
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.67 E-value=3.7e-16 Score=141.32 Aligned_cols=116 Identities=14% Similarity=0.279 Sum_probs=83.2
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeE-EEEEEee-ccccCc-
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE-VIAFRHA-HNVAFQ- 269 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~-ll~~~~~-~~~~~~- 269 (365)
.+|++++++++++|||+||......++|.|.+| ||++++||++++||+||++||||+++.... +++.+.. .....+
T Consensus 35 ~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 114 (184)
T PRK03759 35 LAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGI 114 (184)
T ss_pred eEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCc
Confidence 457788899999999999865555578899987 899999999999999999999999986433 2322211 111111
Q ss_pred ---cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 270 ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 270 ---~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
....+|++... +.+.++++|+.+++|++++++.++....+
T Consensus 115 ~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~~~~ 157 (184)
T PRK03759 115 VENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVDATP 157 (184)
T ss_pred eeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHHhCC
Confidence 12344555442 34566778999999999999988654443
No 61
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.67 E-value=3.8e-16 Score=138.64 Aligned_cols=115 Identities=16% Similarity=0.298 Sum_probs=83.8
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeEEE-EEEe-ec--cccC
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEVI-AFRH-AH--NVAF 268 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~ll-~~~~-~~--~~~~ 268 (365)
.+|++++++++++|||++|.......+|.|.+| ||++++||++++||+||++||||+.+....++ .... .. ....
T Consensus 31 ~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 110 (165)
T cd02885 31 RAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGGL 110 (165)
T ss_pred eEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCCc
Confidence 457788899999999999976655679999997 89999999999999999999999998766654 2221 11 1111
Q ss_pred c--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 269 Q--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 269 ~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
. ....+|.+... ....++.+|+.+++|++++++.++....
T Consensus 111 ~~~~i~~~f~~~~~---~~~~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 111 VEHEIDHVFFARAD---VTLIPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred eeeEEEEEEEEEeC---CCCCCCccceeEEEEECHHHHHHHHHhC
Confidence 1 12234444432 2344567899999999999998865443
No 62
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.66 E-value=6.4e-16 Score=140.10 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=88.1
Q ss_pred eEEEEEEEeC-CCeEEEEeeecCCCC-----CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc
Q 017817 194 VGVGGFVIND-NNEVLVVQEKYCNPA-----FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA 267 (365)
Q Consensus 194 v~V~~vVin~-~g~VLLvrr~~~~~~-----~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~ 267 (365)
.+|++++++. +++|||+++ ++++. .+..|++|||++|+||++++||+||++||||+.+..+..++.+...++.
T Consensus 45 ~~v~vl~~~~~~~~vlLvrq-~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~ 123 (185)
T TIGR00052 45 NAAAVLLYDPKKDTVVLIEQ-FRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGG 123 (185)
T ss_pred CeEEEEEEECCCCEEEEEEC-ceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCC
Confidence 3577787875 479999988 56554 5789999999999999999999999999999999888888776666665
Q ss_pred CccEEEEEEEEEecCC--ccccCCccceeeEEEEcccccccCCCCc
Q 017817 268 FQKSDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 268 ~~~~~~~f~~~l~~~~--~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
......+|++...... .....+++|..+..|++++++.++....
T Consensus 124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 5556667777653211 1112245666789999999998875433
No 63
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.66 E-value=1.6e-15 Score=138.07 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=90.4
Q ss_pred EEEEEEEeC-CCeEEEEeeecCCCC------CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc
Q 017817 195 GVGGFVIND-NNEVLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA 267 (365)
Q Consensus 195 ~V~~vVin~-~g~VLLvrr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~ 267 (365)
+|++++++. +++++|+++ +|++. ....|++|+|.+|+| ++++||+||++||||+.+..+..++.+...++.
T Consensus 47 ~v~Vl~~~~~~~~vvLvrQ-yR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~ 124 (191)
T PRK15009 47 GATILLYNAKKKTVVLIRQ-FRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG 124 (191)
T ss_pred EEEEEEEECCCCEEEEEEc-ccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCcc
Confidence 466777775 679999999 78876 778899999999976 699999999999999999988888887777777
Q ss_pred CccEEEEEEEEEecC--CccccCCccceeeEEEEcccccccCCCC
Q 017817 268 FQKSDLFFICMLKPL--STEIKVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 268 ~~~~~~~f~~~l~~~--~~~i~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
.....++|++..... ......+++|..++.|+|++|+.++...
T Consensus 125 s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~ 169 (191)
T PRK15009 125 VTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKT 169 (191)
T ss_pred cCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHc
Confidence 776667777765311 1122345778889999999999887543
No 64
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.65 E-value=7.6e-16 Score=135.97 Aligned_cols=114 Identities=16% Similarity=0.269 Sum_probs=81.4
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeec-cccCc
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE--VIAFRHAH-NVAFQ 269 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~--ll~~~~~~-~~~~~ 269 (365)
.+|+++|+|.+++|||+||...+...+|.|++| ||+++.|| .+||+||++||||+++.... .+...... ....+
T Consensus 28 ~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g 105 (158)
T TIGR02150 28 RAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG 105 (158)
T ss_pred EEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCC
Confidence 347788999999999999976655689999997 79999999 49999999999999986554 23221111 11112
Q ss_pred --cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 270 --KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 270 --~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
....+|.+.. . ..+.++.+|+.+++|++++|+.++...++
T Consensus 106 ~~~~~~~f~~~~--~-~~~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 106 EHELCPVFFARA--P-VPLNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred cEEEEEEEEEec--C-CcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 2233444433 2 24556677999999999999988765544
No 65
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.9e-16 Score=146.94 Aligned_cols=132 Identities=26% Similarity=0.369 Sum_probs=104.2
Q ss_pred CcceeeccccccCCC-CCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHH
Q 017817 169 EPEYLMLTYWIPDGP-CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 247 (365)
Q Consensus 169 ~~~y~~l~~wl~~~~-~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EE 247 (365)
.+.+.....|...|+ +....||..-++|.+++++.+. +||.++... .+|.+.+-+|+||+|||+++|++|||+||
T Consensus 119 ~~~~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~~-ilLa~~~~h---~~g~yS~LAGFVE~GETlE~AV~REv~EE 194 (279)
T COG2816 119 TKTYPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGDE-ILLARHPRH---FPGMYSLLAGFVEPGETLEQAVAREVFEE 194 (279)
T ss_pred CcCccccCceeeeCCCCCCccCCCCCCeEEEEEecCCc-eeecCCCCC---CCcceeeeeecccCCccHHHHHHHHHHHh
Confidence 555666666777664 4567788888888777776544 888877532 38999999999999999999999999999
Q ss_pred hCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccc-cccCC
Q 017817 248 TGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME-FVKQP 308 (365)
Q Consensus 248 TGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leE-l~~~~ 308 (365)
+||+++.+++++ +++++|..+ ++..|.....+++|+++..|+.+++||+.+| ++.++
T Consensus 195 ~Gi~V~~vrY~~---SQPWPfP~S-LMigf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 195 VGIKVKNVRYVG---SQPWPFPHS-LMLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred hCeEEeeeeEEe---ccCCCCchh-hhhhheeeeccccccCCcchhhhccccCHhHHhhhcC
Confidence 999999888766 677888743 4555555566788999999999999999999 55554
No 66
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.63 E-value=2.1e-15 Score=148.88 Aligned_cols=114 Identities=24% Similarity=0.416 Sum_probs=79.2
Q ss_pred CcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----ec
Q 017817 190 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----AH 264 (365)
Q Consensus 190 ~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~-----~~ 264 (365)
+...++|++++++ +++|||++|... ++.|.|.+|||++|+||++++||+||++||||+++....+.+... ..
T Consensus 200 ~~~~vtv~avv~~-~g~VLLvrR~~~--p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~ 276 (340)
T PRK05379 200 PPTFVTVDAVVVQ-SGHVLLVRRRAE--PGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH 276 (340)
T ss_pred CCcceEEEEEEEE-CCEEEEEEecCC--CCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence 3345778777765 679999998643 358999999999999999999999999999999876544332211 11
Q ss_pred cc--cC-ccEEEEEEEEEecCC-ccccCCccceeeEEEEcccccccC
Q 017817 265 NV--AF-QKSDLFFICMLKPLS-TEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 265 ~~--~~-~~~~~~f~~~l~~~~-~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
+. .. ....++|.+...... ..+. ..+|..+++|++++++..+
T Consensus 277 p~r~~~~~~i~~~f~~~~~~~~~~~~~-~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 277 PGRSLRGRTITHAFLFEFPAGELPRVK-GGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCCcEEEEEEEEEecCCccCccC-CCCceeeEEEEEHHHhhhh
Confidence 11 11 234456666553221 1122 3568899999999999875
No 67
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=2.1e-15 Score=129.55 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=79.1
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcc-eeeEEEEEE----eeccccCc
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT-EFVEVIAFR----HAHNVAFQ 269 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~-~~~~ll~~~----~~~~~~~~ 269 (365)
++.+++++.+++|||+++........+.|.+|||++++||++.+||.||++||||+.+ .....+... ........
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~ 81 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR 81 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence 4788999999999999886432236789999999999999999999999999999998 544444222 11222222
Q ss_pred cEEEEEEEEEecCCcc-cc--CC-ccceeeEEEEcccccccC
Q 017817 270 KSDLFFICMLKPLSTE-IK--VD-DLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 270 ~~~~~f~~~l~~~~~~-i~--~~-~~Ei~~~~Wv~leEl~~~ 307 (365)
...++|++........ .. .. ..++.+++|++++++.+.
T Consensus 82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 4456777765421111 11 11 234668999999999886
No 68
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.63 E-value=6.3e-15 Score=120.87 Aligned_cols=113 Identities=25% Similarity=0.460 Sum_probs=80.7
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc--cCccEE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSD 272 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~--~~~~~~ 272 (365)
++++++++.++++||++|... ..+.|.+|||+++.||++.++|+||+.||+|+.+.....+..+..... ......
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVV 78 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEE
Confidence 467888888799999998633 579999999999999999999999999999998865454444332222 222334
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.+|.+........ ..++.|..+++|++++++.++....
T Consensus 79 ~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~~l~~~~~~~ 116 (123)
T cd02883 79 FVFLARLVGGEPT-LLPPDEISEVRWVTLDELPALALSP 116 (123)
T ss_pred EEEEEEeCCCCcC-CCCCCccceEEEEcHHHCccccccc
Confidence 4454544322111 2356778899999999998865544
No 69
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.60 E-value=8.8e-15 Score=133.18 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=83.4
Q ss_pred eEEEEEEEe--CCCeEEEEeeecCCCCCCCceEeceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCcc
Q 017817 194 VGVGGFVIN--DNNEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK 270 (365)
Q Consensus 194 v~V~~vVin--~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~ 270 (365)
.++.++++. +++.+|++||........|.|+||||.+|+| |++++||+||++||||+++..+..++.........+.
T Consensus 31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~ 110 (190)
T PRK10707 31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY 110 (190)
T ss_pred CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence 345555453 4468888887644434678999999999985 6899999999999999999999988876644344444
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
....+++.+.. .....++++|+.++.|+|++++.++.
T Consensus 111 ~~~~~v~~~~~-~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 111 QVTPVVGIIPP-DLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEEEEEECC-CCCCCCChhhhheEEEEeHHHHhCcc
Confidence 44444444432 23445577899999999999998864
No 70
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.57 E-value=7.8e-15 Score=125.56 Aligned_cols=98 Identities=24% Similarity=0.283 Sum_probs=68.9
Q ss_pred CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-----Eee-cc------ccCcc
Q 017817 203 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-----RHA-HN------VAFQK 270 (365)
Q Consensus 203 ~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-----~~~-~~------~~~~~ 270 (365)
+++++||++++++ ..+.|.||||++|+||++.+||+||++||||+++.. .+++. +.. .+ ...+.
T Consensus 11 ~~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (132)
T cd04661 11 DDTLVLLVQQKVG---SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGA 86 (132)
T ss_pred cCcEEEEEEeecC---CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCccc
Confidence 4578999998632 368999999999999999999999999999998764 23221 111 11 11123
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
...+|.|... ++++.+ .+|+.+++|++++|+.++
T Consensus 87 ~~~~f~~~~~--~g~~~~-~~e~~~~~W~~~~el~~~ 120 (132)
T cd04661 87 KVFFFKARYM--SGQFEL-SQNQVDFKWLAKEELQKY 120 (132)
T ss_pred EEEEEEEEEe--cCcccc-CCCcceeEecCHHHHHhh
Confidence 3455555543 444443 478899999999999875
No 71
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.55 E-value=2.8e-14 Score=128.31 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=78.2
Q ss_pred EEEEeCC--CeEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCcceeeE---EEEEEe---e-cccc
Q 017817 198 GFVINDN--NEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVE---VIAFRH---A-HNVA 267 (365)
Q Consensus 198 ~vVin~~--g~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~---ll~~~~---~-~~~~ 267 (365)
+++.|.+ +++++.||...+..++|.|+ +|||++++||++.+||+||++||||+++.... .++... . ....
T Consensus 39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~ 118 (180)
T cd03676 39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG 118 (180)
T ss_pred EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence 4566765 89999999888778999995 89999999999999999999999999986533 233211 1 1111
Q ss_pred C-ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817 268 F-QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 268 ~-~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
. .....+|.+.. +....+.++++|+.++.|++++|+.++.
T Consensus 119 ~~~e~~~~f~~~~-~~~~~~~~~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 119 LQPEVEYVYDLEL-PPDFIPAPQDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred EeeeEEEEEEEEc-CCCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence 1 12233344433 2223355677899999999999998753
No 72
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.55 E-value=1e-13 Score=122.13 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=87.5
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 273 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~ 273 (365)
..|.++++.+ +++||+++. ...|++|||++|+||++++||+||++||||+.+..+..++.+...+........
T Consensus 25 ~~V~ii~~~~-~~~LL~~~~------~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~ 97 (156)
T TIGR02705 25 NHVLVIPRYK-DQWLLTEHK------RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKD 97 (156)
T ss_pred CEEEEEEEEC-CEEEEEEEc------CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEE
Confidence 3465665654 489999874 245999999999999999999999999999999999999987776655445556
Q ss_pred EEEEEEecCCccccCCccceeeEE-EEcccccccCCCCcCC---chHHHHHHHHHHHHh
Q 017817 274 FFICMLKPLSTEIKVDDLEIKGAK-WMPFMEFVKQPLIQGD---CMFKKVIDICIARLR 328 (365)
Q Consensus 274 ~f~~~l~~~~~~i~~~~~Ei~~~~-Wv~leEl~~~~~~~~~---~~~~~il~~~l~~lr 328 (365)
+|++..... + +.+|..+.. ++++++++++....+. -+-...+..++++++
T Consensus 98 vf~A~~~~~--~---~~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~ 151 (156)
T TIGR02705 98 VYFAEVSAL--E---SKDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERAK 151 (156)
T ss_pred EEEEEEecc--c---cCCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHHH
Confidence 666666422 2 125545555 7999999876544321 133456667776664
No 73
>PRK08999 hypothetical protein; Provisional
Probab=99.53 E-value=1.4e-13 Score=133.83 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=81.5
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
+.+++++.++++||++|... ..+.|.|++|||++++||++.+||.||++||||+++.....+....+..........+|
T Consensus 8 ~~~vi~~~~~~vLL~kR~~~-~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y 86 (312)
T PRK08999 8 AAGVIRDADGRILLARRPEG-KHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR 86 (312)
T ss_pred EEEEEECCCCeEEEEEecCC-CCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence 44566677789999998643 35789999999999999999999999999999999876665554443333333233344
Q ss_pred EEEEecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817 276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 313 (365)
Q Consensus 276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~ 313 (365)
.+... ... +...|..+++|++++++.+++++...
T Consensus 87 ~~~~~--~~~--~~~~e~~~~~Wv~~~el~~~~~~~~~ 120 (312)
T PRK08999 87 RVTAW--QGE--PHGREGQPLAWVAPDELAVYPFPPAN 120 (312)
T ss_pred EEEEe--cCc--ccCccCCccEEecHHHcccCCCCcch
Confidence 33332 122 23456788999999999998887754
No 74
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.52 E-value=2.1e-15 Score=143.25 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=86.0
Q ss_pred CCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc
Q 017817 186 LPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN 265 (365)
Q Consensus 186 lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~ 265 (365)
-..||+.-+.|.+++++.+++.+|..|+.++ .+|+|..++|++|+||+++|||+||++||||++++.+.+.. ..+
T Consensus 180 n~~yPr~dPvVIm~li~~d~~~~LL~R~~r~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~a---sQP 254 (345)
T KOG3084|consen 180 NVIYPRTDPVVIMLLIDHDGKHALLGRQKRY--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVA---SQP 254 (345)
T ss_pred CeeccCCCCeEEEEEEcCCCCEeeeecccCC--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeee---cCC
Confidence 3456666677888889877765555554455 47899999999999999999999999999999998877544 556
Q ss_pred cc-CccEEEEEEEEEecCCccccCCcc-ceeeEEEEccccccc
Q 017817 266 VA-FQKSDLFFICMLKPLSTEIKVDDL-EIKGAKWMPFMEFVK 306 (365)
Q Consensus 266 ~~-~~~~~~~f~~~l~~~~~~i~~~~~-Ei~~~~Wv~leEl~~ 306 (365)
++ ++.+.+...+.+....++++.+.+ |..+++|++.+|+.+
T Consensus 255 WP~~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084|consen 255 WPLMPQSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS 297 (345)
T ss_pred CCCCchHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence 66 444333222222223367888877 999999999998754
No 75
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.52 E-value=1.7e-13 Score=115.55 Aligned_cols=100 Identities=24% Similarity=0.309 Sum_probs=75.6
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
|.+++++ ++++||++++ .+.|++|||++++||++++||+||++||||+.+.....++.+............+|
T Consensus 3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y 75 (118)
T cd04665 3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVY 75 (118)
T ss_pred EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEE
Confidence 4455554 4799999884 35799999999999999999999999999999988888887765554334445566
Q ss_pred EEEEecCCccccCCccceeeEEEEccccc
Q 017817 276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEF 304 (365)
Q Consensus 276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl 304 (365)
.+..... .......|+....|++.+..
T Consensus 76 ~a~~~~~--~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 76 PAVSAQL--EEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEEec--ccccccccccCcEEeccCCc
Confidence 6655432 22234689999999997655
No 76
>PLN03143 nudix hydrolase; Provisional
Probab=99.52 E-value=1.3e-13 Score=132.62 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=91.4
Q ss_pred eEEEEEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEE-eCCCe--EEEEeeecCC
Q 017817 140 KKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVI-NDNNE--VLVVQEKYCN 216 (365)
Q Consensus 140 ~r~vWl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVi-n~~g~--VLLvrr~~~~ 216 (365)
.|.-|+++..+..++++.....+..+++. .+|+++++ +.+++ ++|++| ++.
T Consensus 100 ~~~gflkv~~d~~~l~~G~~~~~~v~~rg-------------------------~aVaVL~~l~~~ge~~VlLVrQ-~R~ 153 (291)
T PLN03143 100 KRIGFLKFKADIIDKETGQKVPGIVFARG-------------------------PAVAVLILLESEGETYAVLTEQ-VRV 153 (291)
T ss_pred CceeEEEEEEEEEECCCCCEeeEEEEEcC-------------------------CeEEEEEEEeCCCCEEEEEEEe-Eec
Confidence 34348888888877776322122222221 23555544 44444 888888 677
Q ss_pred CCCCCceEeceeeecC-CCCHHHHHHHHHHHHhCCccee--eEEEE---------EEeeccccCccEEEEEEEEEecCC-
Q 017817 217 PAFAGLWKLPTGFIDE-SEEIFKGAVREVKEETGVDTEF--VEVIA---------FRHAHNVAFQKSDLFFICMLKPLS- 283 (365)
Q Consensus 217 ~~~~g~W~lPGG~ve~-GEs~~eAAiREv~EETGl~~~~--~~ll~---------~~~~~~~~~~~~~~~f~~~l~~~~- 283 (365)
+.+...|++|||.+|+ +|++.+||+||++||||+.+.. +..+. .+...++.......+|++......
T Consensus 154 pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~~v~~~ 233 (291)
T PLN03143 154 PVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRGHVDKE 233 (291)
T ss_pred CCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEccccchh
Confidence 7788899999999998 5899999999999999998643 22231 233444444444455555443211
Q ss_pred ------c--cccCCccceeeEEEEcccccccCC
Q 017817 284 ------T--EIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 284 ------~--~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
. ....+++|..++.|++++|+.++.
T Consensus 234 ~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~ 266 (291)
T PLN03143 234 TIRQLQGKETGLRDHGELIKVHVVPYRELWRMT 266 (291)
T ss_pred hhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence 1 112256788899999999988775
No 77
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=5.6e-13 Score=112.41 Aligned_cols=56 Identities=32% Similarity=0.406 Sum_probs=44.0
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~ 254 (365)
+++++...+ .+||++|... ...+.|.||||++|+||++.+||+||++||||+++..
T Consensus 7 av~vl~~~~-~~lL~~r~~~--~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 7 VVALLPVDD-GLLVIRRGIE--PGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEEEEECC-CEEEEEeecC--CCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 334444444 5777776543 2579999999999999999999999999999999863
No 78
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.49 E-value=5.9e-13 Score=113.26 Aligned_cols=58 Identities=31% Similarity=0.403 Sum_probs=45.7
Q ss_pred EEEEEEe---CCCeEEEEeeecC--CCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce
Q 017817 196 VGGFVIN---DNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253 (365)
Q Consensus 196 V~~vVin---~~g~VLLvrr~~~--~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~ 253 (365)
+++++++ +..+|||+++... .....+.|++|||+++.||++.+||+||++||||+++.
T Consensus 3 ~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 3 AGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 5666665 2247999986321 01357899999999999999999999999999999875
No 79
>PLN02709 nudix hydrolase
Probab=99.44 E-value=1.1e-12 Score=121.55 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=81.4
Q ss_pred CeEEEEeeecCCCCCCCceEeceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEec-C
Q 017817 205 NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKP-L 282 (365)
Q Consensus 205 g~VLLvrr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~-~ 282 (365)
..|||++|.......+|.|.||||++|+| +++.+||+||+.||+||.....++++.........+....-|++.+.. .
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~ 130 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK 130 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence 47999999754445799999999999997 579999999999999999988888887665555555555666665542 1
Q ss_pred CccccCCccceeeEEEEcccccccCC
Q 017817 283 STEIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 283 ~~~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
.....++++|+.++.|+|++++.+..
T Consensus 131 ~~~~~~np~EV~~vf~vPL~~ll~~~ 156 (222)
T PLN02709 131 AFKPLPNPAEVEEIFDVPLEMFLKDK 156 (222)
T ss_pred CccccCChhhhheeEEecHHHHhCCc
Confidence 23444677899999999999997644
No 80
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.41 E-value=1.6e-12 Score=122.65 Aligned_cols=118 Identities=15% Similarity=0.223 Sum_probs=80.2
Q ss_pred CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCC-----------------HHHHHHHHHHHHhCC
Q 017817 189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEE-----------------IFKGAVREVKEETGV 250 (365)
Q Consensus 189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs-----------------~~eAAiREv~EETGl 250 (365)
.-.|+. +.++|+|.+|++||+||...+..++|.|+.. +|++..||+ ..+||+||++|||||
T Consensus 53 gl~Hra-~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI 131 (247)
T PLN02552 53 GLLHRA-FSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI 131 (247)
T ss_pred CceEEE-EEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence 344444 7899999999999999988788899999776 455555422 678999999999999
Q ss_pred ccee-----eEEEEEEeecccc---------C-c-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817 251 DTEF-----VEVIAFRHAHNVA---------F-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 251 ~~~~-----~~ll~~~~~~~~~---------~-~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
.+.. +.+++.+...... . . ..+.++ +.......++.++++|+.+++|++++|+.++.
T Consensus 132 ~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~-~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~ 204 (247)
T PLN02552 132 PAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLL-FIRPVRDVKVNPNPDEVADVKYVNREELKEMM 204 (247)
T ss_pred CccccccccceeeeEEEEecccccccccCCCccceEEEEEE-EEEecCCCcccCCHHHhheEEEEeHHHHHHHH
Confidence 9643 3334422211111 1 1 222222 22222234677888999999999999999863
No 81
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.41 E-value=2.8e-12 Score=109.29 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=61.5
Q ss_pred EEEEEEeCCC--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEeeccccCccEE
Q 017817 196 VGGFVINDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV-IAFRHAHNVAFQKSD 272 (365)
Q Consensus 196 V~~vVin~~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~l-l~~~~~~~~~~~~~~ 272 (365)
|.+++.+.++ ++|+.+.. .+.|++|||.+++||++.+||+||++||||+++..... +..............
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~------~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP------LAGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFW 76 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC------CCcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEE
Confidence 4455555544 66666553 24599999999999999999999999999999732221 122111111112222
Q ss_pred EEEEEEEe---cCCc--cccCCccceeeEEEEcccccccC
Q 017817 273 LFFICMLK---PLST--EIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 273 ~~f~~~l~---~~~~--~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
.++++... +... ....++.+...+.|++++++...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 77 HLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred EEEEEEecCCCcccccCcccCCCCceEEEEEEcccccccc
Confidence 33333331 1111 11222344445669999999554
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.38 E-value=4.9e-12 Score=114.58 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=72.1
Q ss_pred EEEEEeCC---CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeE----------------E
Q 017817 197 GGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE----------------V 257 (365)
Q Consensus 197 ~~vVin~~---g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~----------------l 257 (365)
++++.+.. -++|+++|. ..+.|.||||++++||++.+||+||++||||+.++... .
T Consensus 38 ~~i~~~~~~~~l~vLl~~r~-----~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~ 112 (186)
T cd03670 38 GSIHPKSGKPILQFVAIKRP-----DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDG 112 (186)
T ss_pred EEEEecCCCCeeEEEEEEeC-----CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccc
Confidence 34444432 368888885 46899999999999999999999999999976532110 1
Q ss_pred EEEEe-eccccC----cc-EEEEEEEEEecCC--ccccC-CccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 258 IAFRH-AHNVAF----QK-SDLFFICMLKPLS--TEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 258 l~~~~-~~~~~~----~~-~~~~f~~~l~~~~--~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
+..+. ....+. .. ..+.|.+...... ....+ ..+|..+++|+++++++.+.+.+ .++|+.+.+
T Consensus 113 ~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH-----~~Il~~a~~ 184 (186)
T cd03670 113 VEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH-----SQFLKKVAE 184 (186)
T ss_pred cEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccccCH-----HHHHHHHHH
Confidence 11111 111111 11 2233333321100 11112 24578899999999998776655 566666654
No 83
>PLN02791 Nudix hydrolase homolog
Probab=99.28 E-value=1.7e-11 Score=131.13 Aligned_cols=113 Identities=19% Similarity=0.407 Sum_probs=82.0
Q ss_pred EEEEEEEeC-CCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEee----ccc
Q 017817 195 GVGGFVIND-NNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHA----HNV 266 (365)
Q Consensus 195 ~V~~vVin~-~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~----~~~ 266 (365)
+|.++++|. ++++||+||...+..++|.|++ |||+++.||++.+||+||++||+||.+.. ...++.+.. ...
T Consensus 34 AvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g 113 (770)
T PLN02791 34 AVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDG 113 (770)
T ss_pred EEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCC
Confidence 478899996 6999999998888889999999 79999999999999999999999998643 344443211 111
Q ss_pred cCc--cEEEEEEEEE-ecC-CccccCCccceeeEEEEcccccccC
Q 017817 267 AFQ--KSDLFFICML-KPL-STEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 267 ~~~--~~~~~f~~~l-~~~-~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
.+. ....+|++.. .+. ..++.++++|+.+++|++++|+.++
T Consensus 114 ~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~ 158 (770)
T PLN02791 114 KFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA 158 (770)
T ss_pred CcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence 111 2233344332 111 1246678899999999999999754
No 84
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.28 E-value=6.2e-11 Score=99.12 Aligned_cols=112 Identities=29% Similarity=0.454 Sum_probs=70.6
Q ss_pred EEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHH-HHHHHHHHHhCCcce--eeEEEEEEeeccccCc--
Q 017817 196 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK-GAVREVKEETGVDTE--FVEVIAFRHAHNVAFQ-- 269 (365)
Q Consensus 196 V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~e-AAiREv~EETGl~~~--~~~ll~~~~~~~~~~~-- 269 (365)
+.+++.... +++|+++++... +.|.+|||++++||++.+ ||+||++||||+.+. ....++.+........
T Consensus 14 ~~~~~~~~~~~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
T COG0494 14 VAVLVGRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV 89 (161)
T ss_pred EEEEEecCCCCEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc
Confidence 334444333 789999886321 699999999999999888 999999999999988 4555554443332221
Q ss_pred --cEEE-EEEEEEec-CCccccCC---ccceeeEEEEcccccccCCCCc
Q 017817 270 --KSDL-FFICMLKP-LSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 270 --~~~~-~f~~~l~~-~~~~i~~~---~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.... ++.+.... ....+... ..|...+.|++++++.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 138 (161)
T COG0494 90 GGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE 138 (161)
T ss_pred cceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence 1122 22222111 11111111 2578899999999998765544
No 85
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.20 E-value=4.1e-11 Score=102.70 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=79.0
Q ss_pred eeEEEEEEEeCC-C--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-eccc-c
Q 017817 193 QVGVGGFVINDN-N--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-AHNV-A 267 (365)
Q Consensus 193 ~v~V~~vVin~~-g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~-~~~~-~ 267 (365)
+..++++++..+ . +|||++-.+ .+..|-+|+|++|+||+..+||+||+.||.|+......+++.+. ..+. .
T Consensus 9 r~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~ 84 (145)
T KOG2839|consen 9 RLVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKH 84 (145)
T ss_pred EEEEEeeeeeecCcceEEEEEecCC----CCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhh
Confidence 344666666533 3 899998763 25689999999999999999999999999999998888554332 2111 1
Q ss_pred CccE-EEEEEEEEecCCccccC-CccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817 268 FQKS-DLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 326 (365)
Q Consensus 268 ~~~~-~~~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~ 326 (365)
.... ...|..... ...+.-+ ...|..+.+|+.++|..+... +.-++..+..+++.
T Consensus 85 ~~~~k~~~~~l~v~-e~le~wp~~~~~~r~r~W~~ledA~~~~~---~~~m~~al~e~~~~ 141 (145)
T KOG2839|consen 85 RTKPKGVMYVLAVT-EELEDWPESEHEFREREWLKLEDAIELCQ---HKWMKAALEEFLQF 141 (145)
T ss_pred cccccceeehhhhh-hhcccChhhhcccceeEEeeHHHHHHHHh---hHHHHHHHHHHHHH
Confidence 1111 122222211 1112111 234588999999999877643 22334444444443
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.17 E-value=2.5e-10 Score=102.30 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=73.8
Q ss_pred EEEEEEE-eCCC--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817 195 GVGGFVI-NDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 271 (365)
Q Consensus 195 ~V~~vVi-n~~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~ 271 (365)
+|+++.+ ..+| .++|+++ +|++.+.-..++|+|.||.||++++||+||++||||+.-+....-......++..+..
T Consensus 75 gVaIl~il~~dG~~~ivL~kQ-fRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~ 153 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQ-FRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCN 153 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEe-ecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCc
Confidence 4444433 2344 5777777 8999889999999999999999999999999999999854433222222333443433
Q ss_pred EEEEEEEEe---cCCc--cccCCccceeeEEEEcccccccC
Q 017817 272 DLFFICMLK---PLST--EIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 272 ~~~f~~~l~---~~~~--~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
....++... +.+. ...+++.|..++.-+++.++.+.
T Consensus 154 ~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~ 194 (225)
T KOG3041|consen 154 LCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE 194 (225)
T ss_pred eEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence 333333332 2111 12346788999999998887653
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.03 E-value=3.4e-09 Score=87.22 Aligned_cols=110 Identities=18% Similarity=0.332 Sum_probs=74.1
Q ss_pred EEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEE
Q 017817 198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC 277 (365)
Q Consensus 198 ~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~ 277 (365)
++++..++++||.||.. ...+.|+|+||+|.++.+|+.+++..||+.||.++ ....++...+....+.....+|.+
T Consensus 7 ~~ii~~~~~~ll~kR~~-~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~ 82 (118)
T cd03431 7 VVVIRNDGRVLLEKRPE-KGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLA 82 (118)
T ss_pred EEEEecCCeEEEEECCC-CCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEE
Confidence 34445578999999964 45689999999999999999999999999999875 122233333434444434445555
Q ss_pred EEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817 278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID 321 (365)
Q Consensus 278 ~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~ 321 (365)
.... .. .+..+++|++++++.+++++. ..+++++
T Consensus 83 ~~~~--~~-----~~~~~~~W~~~eel~~~~~p~---~~~kil~ 116 (118)
T cd03431 83 RLEG--DL-----LAPDEGRWVPLEELDEYALPT---VMRKILE 116 (118)
T ss_pred EEeC--CC-----cCccccEEccHHHHhhCCCCH---HHHHHHH
Confidence 4421 11 234578999999999987765 3345443
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.82 E-value=1.1e-08 Score=94.42 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=79.5
Q ss_pred eEEEEEEEeC-C--CeEEEEeeecCCCCCCCceEeceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc
Q 017817 194 VGVGGFVIND-N--NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ 269 (365)
Q Consensus 194 v~V~~vVin~-~--g~VLLvrr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~ 269 (365)
.+|.+.+++. + -+|||.+|...-..++|.-.||||..|+. ++-.++|.||.+||.|++.+...+++.........+
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~ 123 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSG 123 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccC
Confidence 3455555554 2 46888888654456789999999999985 577789999999999999988887775544433333
Q ss_pred cEEEEEEEEEecCC--ccccCCccceeeEEEEcccccccC
Q 017817 270 KSDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 270 ~~~~~f~~~l~~~~--~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
....-+++.+.... ....+..+|..++.|+|++++..-
T Consensus 124 ~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 124 WSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred cccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 33333333332111 345567899999999999999763
No 89
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.81 E-value=1.2e-08 Score=90.16 Aligned_cols=117 Identities=13% Similarity=0.263 Sum_probs=88.1
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeE---EEE---EEeecccc
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE---VIA---FRHAHNVA 267 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~---ll~---~~~~~~~~ 267 (365)
+..++++|++|++|+.||...+..+++.|.=- .||--+||+..+||+|-+.+|+||+..... ++. ++......
T Consensus 35 AFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~ 114 (185)
T COG1443 35 AFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDG 114 (185)
T ss_pred hhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCC
Confidence 46789999999999999988888899999975 688889999999999999999999987322 222 11222233
Q ss_pred CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
....-+.++...+..+ .+.+.++|+.+++|++++++.++.....
T Consensus 115 ~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~~~ 158 (185)
T COG1443 115 IVENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDATP 158 (185)
T ss_pred cceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcCCc
Confidence 3333455555554333 5667789999999999999988765554
No 90
>PLN02839 nudix hydrolase
Probab=98.62 E-value=3.6e-07 Score=90.11 Aligned_cols=105 Identities=16% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCccee---eEEEEEEeecc-ccCc-cEEEEEE
Q 017817 203 DNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEF---VEVIAFRHAHN-VAFQ-KSDLFFI 276 (365)
Q Consensus 203 ~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~---~~ll~~~~~~~-~~~~-~~~~~f~ 276 (365)
.+.++++.||...+..++|+|+- .||.+..||++.++++||..||.||.... ....+.+.... ...+ .....|+
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~ 295 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFC 295 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEE
Confidence 33579999998888889999995 68999999999999999999999997542 22233322211 1111 2345555
Q ss_pred EEEe-cCCccccCCccceeeEEEEcccccccC
Q 017817 277 CMLK-PLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 277 ~~l~-~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
+.+. +.+..++++++|++++.+++++|+.+.
T Consensus 296 YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~ 327 (372)
T PLN02839 296 YDLELPQDFVPKNQDGEVESFKLIPVAQVANV 327 (372)
T ss_pred eeeecCCccccCCCccceeEEEEecHHHHHHH
Confidence 5554 222344667899999999999999754
No 91
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.61 E-value=1.9e-07 Score=77.55 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=64.8
Q ss_pred EEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEE
Q 017817 198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC 277 (365)
Q Consensus 198 ~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~ 277 (365)
+++++.++++||.||. ....+.|+|+||.-.++... ..+++.+.+.+..|+.+.....++.+.+..+++.....+|.+
T Consensus 2 ~~i~~~~~~~Ll~kRp-~~gll~GLwefP~~e~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~ 79 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRP-EKGLLAGLWEFPLIESDEED-DEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV 79 (114)
T ss_dssp EEEEETTSEEEEEE---SSSTTTT-EE--EEE-SSS--CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred EEEEEeCCEEEEEECC-CCChhhcCcccCEeCccCCC-CHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence 5778899999999996 44569999999998887433 356666677788888876666666666666665555566666
Q ss_pred EEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 278 ~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.+..... .+..+.+|++++++.+++++.
T Consensus 80 ~~~~~~~------~~~~~~~W~~~~~l~~~~~p~ 107 (114)
T PF14815_consen 80 EVSADPP------AEPEEGQWVSLEELDQYPLPT 107 (114)
T ss_dssp EEE-SS----------TTEEEEEGGGGGGS---H
T ss_pred EecCCCC------CCCCCcEEEEHHHHhhCCCCH
Confidence 6543211 145688999999999988866
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.50 E-value=6.6e-07 Score=75.21 Aligned_cols=125 Identities=20% Similarity=0.263 Sum_probs=76.0
Q ss_pred eEEEEEEEeC-CC--eEEEEeee--cCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee-eEEEEEEeecccc
Q 017817 194 VGVGGFVIND-NN--EVLVVQEK--YCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF-VEVIAFRHAHNVA 267 (365)
Q Consensus 194 v~V~~vVin~-~g--~VLLvrr~--~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~-~~ll~~~~~~~~~ 267 (365)
..++++++.. .| .|||+.-- +....+.|.|.+|.|....||++..||+||..||+||.++- ...++.. ...
T Consensus 4 ~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~---kQ~ 80 (161)
T COG4119 4 LSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSL---KQS 80 (161)
T ss_pred ccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhh---ccC
Confidence 3466677652 23 46666541 11223578899999999999999999999999999998732 1122211 111
Q ss_pred CccEEE----------------EEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHH
Q 017817 268 FQKSDL----------------FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI 322 (365)
Q Consensus 268 ~~~~~~----------------~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~ 322 (365)
-++..+ .|-....+.++..+. -.|...+.||+++|.....+..+..++.++...
T Consensus 81 GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~-FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~ 150 (161)
T COG4119 81 GGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRK-FPEVDRAGWFPLAEARTKILKGQRPFLDRLMAH 150 (161)
T ss_pred CCcEEEEEeeeeeeehhhhhcceeeeecCCCCCcccc-CcccccccceecHHHHhHHhhccchHHHHHHHH
Confidence 122222 233333344444432 357889999999998876666654444444333
No 93
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=7.2e-05 Score=67.75 Aligned_cols=115 Identities=20% Similarity=0.326 Sum_probs=81.7
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEe---------ceeeecC-CCCHHHHHHHHHHHHhCCcceee-----EEEE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL---------PTGFIDE-SEEIFKGAVREVKEETGVDTEFV-----EVIA 259 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l---------PGG~ve~-GEs~~eAAiREv~EETGl~~~~~-----~ll~ 259 (365)
+..++++|.++++||+||...+..+++.|.= |+...+. +.....||+|-+.-|+||..+.+ .+++
T Consensus 54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~lt 133 (225)
T KOG0142|consen 54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLT 133 (225)
T ss_pred eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccce
Confidence 4678999999999999998888888888872 2322221 34678999999999999987543 3444
Q ss_pred EEe---eccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817 260 FRH---AHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 260 ~~~---~~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
.++ ...+.+|...+-|+..+.. +..++++++|+.+++|++.+|+.++...
T Consensus 134 rihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~ 186 (225)
T KOG0142|consen 134 RIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAK 186 (225)
T ss_pred eeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhc
Confidence 333 2335556555555555443 4567777899999999999999876433
No 94
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.34 E-value=0.0016 Score=57.30 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=73.8
Q ss_pred EEEEeCCCeEEEEeeecCCC--CCCCceEe-ceeeecCCC--CHHH-----HHHHHHHHHhCCc---ceeeEEEEEEeec
Q 017817 198 GFVINDNNEVLVVQEKYCNP--AFAGLWKL-PTGFIDESE--EIFK-----GAVREVKEETGVD---TEFVEVIAFRHAH 264 (365)
Q Consensus 198 ~vVin~~g~VLLvrr~~~~~--~~~g~W~l-PGG~ve~GE--s~~e-----AAiREv~EETGl~---~~~~~ll~~~~~~ 264 (365)
+++.++ ++||+-.|-.+.. ...+.+.+ .|||+..++ ++.+ .+.||+.||.++. ......+++....
T Consensus 66 vvi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd 144 (203)
T COG4112 66 VVIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDD 144 (203)
T ss_pred EEEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCC
Confidence 445554 4999998854332 22456777 489998754 3332 3679999999998 5557788887766
Q ss_pred cccCccEEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817 265 NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306 (365)
Q Consensus 265 ~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~ 306 (365)
....++.++-.++..+....+....+.+..+++|+.++++.+
T Consensus 145 ~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 145 TNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred CcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence 666666776666655433344444566788999999999977
No 95
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.12 E-value=7.4e-05 Score=72.32 Aligned_cols=103 Identities=24% Similarity=0.303 Sum_probs=65.8
Q ss_pred eEEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccccCcc
Q 017817 194 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQK 270 (365)
Q Consensus 194 v~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~~~~~~~~ 270 (365)
++.+++++|.. .++||++.. ....|.+|-|++..+|+-.++|+|||.||||.+.... ...+ + .....+.
T Consensus 83 Pv~ga~ild~~~sr~llv~g~-----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~-I--e~nI~dq 154 (348)
T KOG2937|consen 83 PVRGAIILDEKRSRCLLVKGW-----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-I--ETNIRDQ 154 (348)
T ss_pred CCchHhhhhhhhhhhheeece-----ecccccccCccccccchhhhcchhcccchhhcCHHHHhccccC-c--ccchhhc
Confidence 45677888865 678888774 3445999999999999999999999999999987421 1111 0 0111121
Q ss_pred E-EEEEEEEEecC-CccccCCccceeeEEEEcccccc
Q 017817 271 S-DLFFICMLKPL-STEIKVDDLEIKGAKWMPFMEFV 305 (365)
Q Consensus 271 ~-~~~f~~~l~~~-~~~i~~~~~Ei~~~~Wv~leEl~ 305 (365)
. .+|....+... ...+. -..|+..+.|..++++.
T Consensus 155 ~~~~fIi~gvs~d~~f~~~-v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 155 LVRLFIINGVSEDTNFNPR-VRKEISKIHWHYLDHLV 190 (348)
T ss_pred eeeeeeeccceeeeecchh-hhccccceeeeehhhhc
Confidence 1 22333222211 11111 24688899999999983
No 96
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00054 Score=62.98 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=35.2
Q ss_pred eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhC
Q 017817 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 249 (365)
Q Consensus 206 ~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG 249 (365)
+++.+||+ ..+.|.+|||.+|+||.+-.+.+||..||.=
T Consensus 140 e~vavkr~-----d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRP-----DNGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecC-----CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 67778885 6889999999999999999999999999974
No 97
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.61 E-value=0.012 Score=58.57 Aligned_cols=111 Identities=11% Similarity=0.104 Sum_probs=59.4
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEE
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF 274 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~ 274 (365)
...++++..++++|+.||. ....+.|+|+||.. +.. ...++..|+.|+.......++.+.+..+++......
T Consensus 232 ~~~~~~~~~~~~~~l~~r~-~~gl~~gl~~fP~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~ 303 (350)
T PRK10880 232 TGYFLLLQHGDEVWLEQRP-PSGLWGGLFCFPQF--ADE-----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVP 303 (350)
T ss_pred EEEEEEEEECCEEEEEECC-ccChhhccccCCCC--cch-----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEE
Confidence 3444555567899999986 34568999999963 211 124566688887532222233233323333322223
Q ss_pred EEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817 275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID 321 (365)
Q Consensus 275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~ 321 (365)
+.+.... .... ... .+..|++++++.+++++.. .+++++
T Consensus 304 ~~~~~~~--~~~~-~~~--~~~~w~~~~~~~~~~~p~~---~~k~l~ 342 (350)
T PRK10880 304 MWLPVSS--FTGC-MDE--GNGLWYNLAQPPSVGLAAP---VERLLQ 342 (350)
T ss_pred EEEEccc--cccc-cCC--cCCeEechHHhcccCCcHH---HHHHHH
Confidence 3332211 1000 111 2346999999999888773 355554
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=95.15 E-value=0.078 Score=51.11 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=60.6
Q ss_pred eEeceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccccCccEEEEEEEEEecCC----ccccCCccceeeE
Q 017817 223 WKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVAFQKSDLFFICMLKPLS----TEIKVDDLEIKGA 296 (365)
Q Consensus 223 W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~~~~~~~~~f~~~l~~~~----~~i~~~~~Ei~~~ 296 (365)
.++.+|.|+..-+..+-|.||..||.|+++.. .+.+..+.+.-+..+....+|+|..+... +--..+++|+.+.
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEv 365 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEV 365 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeE
Confidence 56778888888889999999999999999754 34455555555566656666777664221 1122356788888
Q ss_pred EEEcccccccC
Q 017817 297 KWMPFMEFVKQ 307 (365)
Q Consensus 297 ~Wv~leEl~~~ 307 (365)
.-+++++++.+
T Consensus 366 v~lsle~a~~~ 376 (405)
T KOG4432|consen 366 VRLSLEDAPSL 376 (405)
T ss_pred EEechhhhhHH
Confidence 99999998775
No 99
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=94.39 E-value=0.22 Score=47.09 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcc--cCCCCCCCCccCcc-hhhHHHHHHhcC--CCCCC
Q 017817 317 KKVIDICIARLRKR--YCGLYPHQLVSAFD-GQTSSLYYNDSD--TQDTN 361 (365)
Q Consensus 317 ~~il~~~l~~lr~~--y~g~~~~~l~~~f~-~~~~~ly~~~~~--~~~~~ 361 (365)
++++..+++++|.+ |.|+.+..+|+.|| -++|.--+.+.+ +.+.|
T Consensus 222 RRIlATa~aRLR~KIKYRPVVFELmp~~FTLlqLQrtVEAisGr~lhKqN 271 (322)
T COG4111 222 RRILATALARLRAKIKYRPVVFELMPPEFTLLQLQRTVEAISGRLLHKQN 271 (322)
T ss_pred HHHHHHHHHHHHhcccccceEEEecCchhhHHHHHHHHHHHcCcccchhh
Confidence 78899999999887 99999999999999 999998888887 44444
No 100
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.18 Score=47.50 Aligned_cols=98 Identities=13% Similarity=0.207 Sum_probs=65.0
Q ss_pred CeEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE---E---EE--eeccccCccEEEEE
Q 017817 205 NEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI---A---FR--HAHNVAFQKSDLFF 275 (365)
Q Consensus 205 g~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll---~---~~--~~~~~~~~~~~~~f 275 (365)
-++.+.||+..+..|++.|+ +.||++--|-.+.++|+.|..||..++.....-+ | ++ .+..+.+. ..-|
T Consensus 148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~p--e~qY 225 (306)
T KOG4313|consen 148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFP--ETQY 225 (306)
T ss_pred eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCc--cceE
Confidence 36888899888888999998 5699999999999999999999999987332211 1 11 11112222 3445
Q ss_pred EEEEecC-CccccCCccceeeEEEEccccc
Q 017817 276 ICMLKPL-STEIKVDDLEIKGAKWMPFMEF 304 (365)
Q Consensus 276 ~~~l~~~-~~~i~~~~~Ei~~~~Wv~leEl 304 (365)
++.+... ..-++..+.|...+..+++.|.
T Consensus 226 VfDL~l~~d~iP~~nDGEV~~F~Lltl~~~ 255 (306)
T KOG4313|consen 226 VFDLELPLDFIPQNNDGEVQAFELLTLKDC 255 (306)
T ss_pred EEeccCchhhcCCCCCCceeeEeeecHHHH
Confidence 5555322 2223445677877777766554
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=93.78 E-value=0.18 Score=48.73 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=48.4
Q ss_pred eEEEEEEEeCC-CeEEEEeeecCCCCC-------------------------CCceEeceeeecCCCCHHHHHHHHHHHH
Q 017817 194 VGVGGFVINDN-NEVLVVQEKYCNPAF-------------------------AGLWKLPTGFIDESEEIFKGAVREVKEE 247 (365)
Q Consensus 194 v~V~~vVin~~-g~VLLvrr~~~~~~~-------------------------~g~W~lPGG~ve~GEs~~eAAiREv~EE 247 (365)
-+|.+++++.+ .++|++++ +++... .-..++.||.||..-++.+-|..||.||
T Consensus 27 ~~v~ill~~r~~eq~l~vrq-fr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~ee 105 (405)
T KOG4432|consen 27 SSVSILLFHRDLEQFLLVRQ-FRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEE 105 (405)
T ss_pred cceEEEEEccchhhhehhhh-hchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHH
Confidence 35777888866 45677766 333221 1235688999999999999999999999
Q ss_pred hCCcceeeEEEEE
Q 017817 248 TGVDTEFVEVIAF 260 (365)
Q Consensus 248 TGl~~~~~~ll~~ 260 (365)
.|+++...+++..
T Consensus 106 cgy~v~~d~l~hv 118 (405)
T KOG4432|consen 106 CGYRVDPDDLIHV 118 (405)
T ss_pred hCCcCChhHceEE
Confidence 9999987665543
No 102
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=93.49 E-value=0.31 Score=44.36 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=33.6
Q ss_pred EEEEeCC--CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCc
Q 017817 198 GFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251 (365)
Q Consensus 198 ~vVin~~--g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~ 251 (365)
++++... -.|||.|.. ...|.+|||.+.+||+..++..|.+.+-.|..
T Consensus 49 Vllvh~h~~PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 49 VLLVHEHGHPHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEETTEEEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred EEEEecCCCcEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 3444444 368988863 44899999999999999999999999999976
No 103
>PRK13910 DNA glycosylase MutY; Provisional
Probab=92.61 E-value=0.57 Score=45.58 Aligned_cols=91 Identities=13% Similarity=0.265 Sum_probs=48.1
Q ss_pred EEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEE
Q 017817 198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC 277 (365)
Q Consensus 198 ~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~ 277 (365)
++++ .++++||.||. ...+.|+|+||.. +. +.+.... .++.+.+..+++......+.+
T Consensus 191 ~~~~-~~~~~ll~kr~--~~l~~gl~~fP~~--~~--------------~~~~~~~---~~~~~~H~fTH~~~~~~~~~~ 248 (289)
T PRK13910 191 GVVI-QNNQIALEKIE--QKLYLGMHHFPNL--KE--------------NLEYKLP---FLGAIKHSHTKFKLNLNLYLA 248 (289)
T ss_pred EEEE-ECCEEEEEECC--CchhcccccCCCC--hh--------------hhccccc---ccCceEEEEEeEEEEEEEEEE
Confidence 3444 46789998874 3478999999963 21 1111111 122222323333322233333
Q ss_pred EEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHH
Q 017817 278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 323 (365)
Q Consensus 278 ~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~ 323 (365)
... . . ..+.+|++++++.+++++.. .+++++.+
T Consensus 249 ~~~---~----~---~~~~~w~~~~~~~~~~~p~~---~~k~~~~l 281 (289)
T PRK13910 249 AIK---D----L---KNPIRFYSLKDLETLPISSM---TLKILNFL 281 (289)
T ss_pred Eec---c----C---CccceEecHHHhhhcCCcHH---HHHHHHHH
Confidence 221 0 0 12448999999999888763 45555443
No 104
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=91.93 E-value=0.33 Score=43.24 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=38.1
Q ss_pred EEEEeCC--CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhC
Q 017817 198 GFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 249 (365)
Q Consensus 198 ~vVin~~--g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG 249 (365)
++++.+. -.|||.|- +...+++|||.+++||+-.+...|-+-|-+|
T Consensus 75 vlivheH~lPHvLLLQi------g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 75 VLIVHEHNLPHVLLLQI------GNTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred eEEEeecCCCeEEEEee------CCEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 3444433 57888885 4568999999999999999999999999999
No 105
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=88.93 E-value=1.1 Score=44.48 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=61.2
Q ss_pred CCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc
Q 017817 187 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 266 (365)
Q Consensus 187 P~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~ 266 (365)
|.....+..++.++.+.+++++|.++.. ...+.|.|.+|....+. ...+...+.|+.. +.++.+.+..+
T Consensus 229 ~k~~~~~~~~~~~~~~~~~~~~l~kr~~-~gl~~gl~~fP~~e~~~-------~~~~~~~~~~~~~---~~~~~~~H~ft 297 (342)
T COG1194 229 PKKKLPRRFAAFLILNRDGEVLLEKRPE-KGLLGGLWCFPQFEDEA-------DLLDWLAADGLAA---EPLGAFRHTFT 297 (342)
T ss_pred cccccchheeeEEEEccCcchhhhhCcc-cCceecccccccccccc-------hhhhHhhhccccc---ccccceeeeee
Confidence 3333335567777788899999999864 44589999999876544 1222233334433 22333333333
Q ss_pred cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817 267 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID 321 (365)
Q Consensus 267 ~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~ 321 (365)
.+..... +.+.. .. .+. +..|++++++....++. .+++++.
T Consensus 298 h~~l~i~-~~a~~--~~-------~~~-~~~w~~~~~~~~~~l~~---p~~k~l~ 338 (342)
T COG1194 298 HFRLTIE-LRASA--SL-------VLS-DGRWYNLSDLESIGLPA---PVKKLLQ 338 (342)
T ss_pred EEEEEEE-EEeec--cc-------CCC-CceeccccccccccccH---HHHHHHH
Confidence 3221111 11111 10 222 78999999999877766 3344444
No 106
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=87.87 E-value=1.4 Score=41.80 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=58.9
Q ss_pred EEEEeeecCCCCCCCceEeceeee-cCCCCHHHHHHHHHHHHhCCcceeeE----EEEEE--eec---cccC--ccEEEE
Q 017817 207 VLVVQEKYCNPAFAGLWKLPTGFI-DESEEIFKGAVREVKEETGVDTEFVE----VIAFR--HAH---NVAF--QKSDLF 274 (365)
Q Consensus 207 VLLvrr~~~~~~~~g~W~lPGG~v-e~GEs~~eAAiREv~EETGl~~~~~~----ll~~~--~~~---~~~~--~~~~~~ 274 (365)
+||++++.+ ..+.|.||-+.. ++++++...|.|++++-.|=....+- .++.. +.. .... +....+
T Consensus 141 yLLV~~k~g---~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff 217 (263)
T KOG4548|consen 141 YLLVKRKFG---KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFF 217 (263)
T ss_pred EEEEeeccC---ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEE
Confidence 788886654 367999999999 99999999999999999996543321 12211 110 0111 112334
Q ss_pred EEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817 275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
|-|.+.+.+ .. +..-..++.|++-+|+.+.
T Consensus 218 ~k~~lv~~~-~~--kn~n~edfvWvTkdel~e~ 247 (263)
T KOG4548|consen 218 FKASLVANS-NQ--KNQNKEDFVWVTKDELGEK 247 (263)
T ss_pred eeeeecccc-ch--hcccccceEEechHHHhhh
Confidence 444443322 11 2333456999999999875
No 107
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=72.80 E-value=7.5 Score=37.55 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=23.4
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEecee
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTG 228 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG 228 (365)
..+++.+.++++|+.+|..+ ..+.|+|+||+.
T Consensus 230 ~~~~~~~~~~~~~~~~r~~~-~~~~gl~~~p~~ 261 (275)
T TIGR01084 230 YFLVLQNYDGEVLLEQRPEK-GLWGGLYCFPQF 261 (275)
T ss_pred EEEEEEeCCCeEEEEeCCCC-chhhccccCCCC
Confidence 33444566789999999644 458999999973
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=42.50 E-value=22 Score=24.13 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=12.1
Q ss_pred eceeeecCCCCHHHHHHHHHHHHh
Q 017817 225 LPTGFIDESEEIFKGAVREVKEET 248 (365)
Q Consensus 225 lPGG~ve~GEs~~eAAiREv~EET 248 (365)
.-||..-+|--+...+.||+-||+
T Consensus 13 ClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCCCCCchHHHHHHHHHH
Confidence 457778888888899999999996
No 109
>PF12860 PAS_7: PAS fold
Probab=40.47 E-value=14 Score=29.77 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=34.6
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHH
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVR 242 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiR 242 (365)
.|++++|.++++++..+++ ...|.+|...+.+|-++.+.+.+
T Consensus 6 ~Gv~v~D~~~rl~~~N~~~-----~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 6 QGVAVFDSDGRLVFWNQRF-----RELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred ceEEEEcCCCeEEeEcHHH-----HHHhCCCHHHhcCCCCHHHHHHH
Confidence 6788999999999998874 56899999999888887665543
No 110
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=37.58 E-value=7.8 Score=38.25 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=51.5
Q ss_pred cccccc---CCCCCCCCCCcceeEEEEEEEeC--CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhC
Q 017817 175 LTYWIP---DGPCVLPGNATHQVGVGGFVIND--NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 249 (365)
Q Consensus 175 l~~wl~---~~~~~lP~~~~h~v~V~~vVin~--~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG 249 (365)
+..|+- ..-++.|.+.......+.++.+- +.-+..+.+ .. -+..|.+|-|.+..||-+.++++|+..||+|
T Consensus 217 lkk~~~k~~~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~-~~---~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~ 292 (348)
T KOG2937|consen 217 LKKWILKADEVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSY-FA---KPENWTFPKGKISRGEKPRDASIRSTFEEPG 292 (348)
T ss_pred HHHHHHhccchhhcCcccCccchhHHhhhhccccccceeeccc-cc---ccccccCcccccccCCccccchhhhcCCCcC
Confidence 345544 23355666666666665666653 333333333 22 4678999999999999999999999999999
Q ss_pred Ccce
Q 017817 250 VDTE 253 (365)
Q Consensus 250 l~~~ 253 (365)
+...
T Consensus 293 f~~~ 296 (348)
T KOG2937|consen 293 FPFG 296 (348)
T ss_pred Cccc
Confidence 8764
No 111
>PF14443 DBC1: DBC1
Probab=32.31 E-value=1.6e+02 Score=25.17 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=23.8
Q ss_pred CCceEec--eeeecC-CCCHHHHHHHHHHHHhCCcce
Q 017817 220 AGLWKLP--TGFIDE-SEEIFKGAVREVKEETGVDTE 253 (365)
Q Consensus 220 ~g~W~lP--GG~ve~-GEs~~eAAiREv~EETGl~~~ 253 (365)
+|.|..- ||-.+. ...+..+|+|=++|-|||+..
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 4556543 444443 245789999999999999974
No 112
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=28.77 E-value=24 Score=32.11 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=39.5
Q ss_pred ceeeccccccCCCCCCCCCCc---ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeee---cCCCCHHHHH
Q 017817 171 EYLMLTYWIPDGPCVLPGNAT---HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFI---DESEEIFKGA 240 (365)
Q Consensus 171 ~y~~l~~wl~~~~~~lP~~~~---h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~v---e~GEs~~eAA 240 (365)
+.+|+.-|+.+-|..++..-. ..+|...+|+-.+|++.+..|. +.....-.-.||||.- ..|+++.|++
T Consensus 4 ~~lml~Ewm~~~p~~l~~~w~~~~~P~G~R~lvv~~~g~t~~~~r~-g~~~~~f~s~lP~g~~~~~~~g~tILDci 78 (186)
T cd09232 4 NQLMLSEWMVEVPDDLSEEWLVVPCPVGKRCLVVASKGKTVARSKN-GRTLHRFSSALPGGSRKTSNSGYTILDCI 78 (186)
T ss_pred cceechhhcccCCCccCcceEEEECcCceEEEEEEeCCEEEEEeCC-CCEEEecccCCCCCCcCCCCCCCEEEEEe
Confidence 456777788777666543221 1245556666557777777663 2222334556899864 3455555543
No 113
>PF07809 RTP801_C: RTP801 C-terminal region; InterPro: IPR012918 The members of this family are sequences similar to the C-terminal region of RTP801, the protein product of a hypoxia-inducible factor 1 (HIF-1)- responsive gene []. Two members of this family expressed by Drosophila melanogaster, Scylla (Q9NHN4 from SWISSPROT) and Charybde (Q9NHN5 from SWISSPROT), are designated as Hox targets []. RTP801 is thought to be involved in various cellular processes []. Over expression of the gene caused the apoptosis-resistant phenotype in cycling cells, and apoptosis sensitivity in growth arrested cells []. Moreover, the protein product of the mouse homologue of RTP801 (dig2 (Q9D3F7 from SWISSPROT)) is thought to be induced by diverse apoptotic signals, and also by dexamethasone treatment []. ; GO: 0009968 negative regulation of signal transduction, 0005737 cytoplasm; PDB: 3LQ9_A.
Probab=21.57 E-value=52 Score=27.73 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=13.2
Q ss_pred CCcccccceeeeec---cceecccccce-e-------eEecccccc
Q 017817 12 GSKSVSASSIFQNG---GTTSSSFRHGV-S-------IRFSPQLCS 46 (365)
Q Consensus 12 ~~~~~~~~~~~~~~---~~~~~~~~~~~-~-------~~~~~~~~~ 46 (365)
|..-|+++|++++= .+..+|+|+-| + +++||+|-.
T Consensus 64 Dp~~vpTFEL~Lvlr~d~~~W~~l~~~F~~~~~~~~tl~ls~~frl 109 (116)
T PF07809_consen 64 DPSTVPTFELTLVLRQDSSGWPSLRPLFLKNPGRGRTLRLSPGFRL 109 (116)
T ss_dssp -TTS---EEEEEEEE--TT-------S--T-------EE--S-EEE
T ss_pred CCCCCCcEEEEEEEeeCCCCCHhHHHHhccCcCCCceEEECCCCEE
Confidence 67789999987764 33478887776 2 577888853
No 114
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.66 E-value=2.5e+02 Score=20.81 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=13.4
Q ss_pred CCceEeceeeecCCCCHHH
Q 017817 220 AGLWKLPTGFIDESEEIFK 238 (365)
Q Consensus 220 ~g~W~lPGG~ve~GEs~~e 238 (365)
...|-+|||.+-.+-.-.+
T Consensus 21 ~~GWl~Pgg~vi~NPlkAq 39 (60)
T PF07026_consen 21 KNGWLMPGGKVITNPLKAQ 39 (60)
T ss_pred cceeecCCCeeEcCHHHHH
Confidence 4579999999976543333
Done!