Query 017817
Match_columns 365
No_of_seqs 396 out of 2570
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fb1_A Conserved hypothetical 99.9 9.6E-25 3.3E-29 201.9 14.1 167 186-361 6-182 (226)
2 3gz5_A MUTT/nudix family prote 99.9 2.7E-24 9.1E-29 200.7 12.9 167 188-361 17-195 (240)
3 3fxt_A Nucleoside diphosphate- 99.9 2.1E-25 7.3E-30 183.4 3.7 88 97-184 22-113 (113)
4 2fml_A MUTT/nudix family prote 99.9 1.8E-21 6.1E-26 184.9 19.3 164 185-356 31-229 (273)
5 3h95_A Nucleoside diphosphate- 99.9 3.5E-21 1.2E-25 173.7 14.0 144 183-331 16-162 (199)
6 3i7u_A AP4A hydrolase; nudix p 99.8 1E-20 3.5E-25 160.7 12.2 122 193-327 4-129 (134)
7 3grn_A MUTT related protein; s 99.8 7.1E-20 2.4E-24 157.4 17.1 130 192-327 7-137 (153)
8 3gg6_A Nudix motif 18, nucleos 99.8 1.4E-19 4.7E-24 155.8 17.0 135 191-333 18-153 (156)
9 3gwy_A Putative CTP pyrophosph 99.8 1.9E-19 6.6E-24 152.4 15.7 124 194-326 7-132 (140)
10 3hhj_A Mutator MUTT protein; n 99.8 1.3E-19 4.5E-24 156.5 14.5 137 181-325 17-155 (158)
11 3oga_A Nucleoside triphosphata 99.8 1.6E-19 5.5E-24 157.0 14.9 131 188-322 22-161 (165)
12 4dyw_A MUTT/nudix family prote 99.8 1.1E-19 3.9E-24 157.4 13.4 122 181-306 17-140 (157)
13 3r03_A Nudix hydrolase; struct 99.8 1.8E-19 6.2E-24 152.5 14.1 128 193-328 8-137 (144)
14 1vcd_A NDX1; nudix protein, di 99.8 2.7E-19 9.4E-24 148.0 14.6 121 194-326 3-123 (126)
15 3q1p_A Phosphohydrolase (MUTT/ 99.8 6.2E-19 2.1E-23 160.1 17.5 131 189-331 64-199 (205)
16 2w4e_A MUTT/nudix family prote 99.8 6.2E-20 2.1E-24 157.0 10.3 115 193-309 5-119 (145)
17 1vhz_A ADP compounds hydrolase 99.8 6.2E-19 2.1E-23 159.4 16.8 153 133-311 8-164 (198)
18 3u53_A BIS(5'-nucleosyl)-tetra 99.8 2.8E-19 9.7E-24 154.4 13.7 127 195-329 5-144 (155)
19 3eds_A MUTT/nudix family prote 99.8 4.4E-20 1.5E-24 159.2 8.3 116 190-313 18-141 (153)
20 2yvp_A NDX2, MUTT/nudix family 99.8 2.2E-20 7.4E-25 165.5 6.5 117 194-311 42-158 (182)
21 2rrk_A ORF135, CTP pyrophospho 99.8 5.9E-19 2E-23 148.4 14.9 123 196-326 11-133 (140)
22 3ees_A Probable pyrophosphohyd 99.8 4.9E-19 1.7E-23 150.9 14.5 129 193-329 21-149 (153)
23 2yyh_A MUTT domain, 8-OXO-DGTP 99.8 1.3E-18 4.5E-23 146.9 17.0 124 189-325 5-136 (139)
24 1mk1_A ADPR pyrophosphatase; n 99.8 2E-19 6.9E-24 163.4 12.5 153 133-311 4-162 (207)
25 3exq_A Nudix family hydrolase; 99.8 3.3E-19 1.1E-23 155.1 13.3 128 191-325 8-136 (161)
26 1sjy_A MUTT/nudix family prote 99.8 1.2E-18 4.3E-23 149.7 16.4 119 191-311 11-134 (159)
27 2pbt_A AP4A hydrolase; nudix p 99.8 3.5E-19 1.2E-23 148.7 12.5 124 193-329 4-131 (134)
28 1ktg_A Diadenosine tetraphosph 99.8 7E-19 2.4E-23 147.8 14.1 126 194-328 4-136 (138)
29 3son_A Hypothetical nudix hydr 99.8 3.9E-19 1.3E-23 151.8 12.4 128 194-330 6-144 (149)
30 2fkb_A Putative nudix hydrolas 99.8 1.2E-18 4E-23 153.7 15.6 127 194-326 38-167 (180)
31 3i9x_A MUTT/nudix family prote 99.8 2.3E-19 8E-24 159.9 10.6 134 194-330 28-175 (187)
32 3id9_A MUTT/nudix family prote 99.8 1.5E-18 5.1E-23 151.7 15.5 133 192-335 22-159 (171)
33 1v8y_A ADP-ribose pyrophosphat 99.8 1.4E-18 4.7E-23 152.3 15.1 114 194-311 35-148 (170)
34 3f6a_A Hydrolase, nudix family 99.8 1.3E-18 4.4E-23 150.6 14.7 122 193-324 6-148 (159)
35 1rya_A GDP-mannose mannosyl hy 99.8 2.3E-18 7.9E-23 148.2 15.7 116 192-311 17-142 (160)
36 2kdv_A RNA pyrophosphohydrolas 99.8 2.5E-18 8.6E-23 150.5 15.7 129 192-325 7-153 (164)
37 3o8s_A Nudix hydrolase, ADP-ri 99.8 2.8E-18 9.4E-23 155.9 15.9 131 188-331 65-200 (206)
38 1g0s_A Hypothetical 23.7 kDa p 99.8 8.5E-19 2.9E-23 159.8 12.3 155 133-310 14-182 (209)
39 2b0v_A Nudix hydrolase; struct 99.8 2.6E-18 8.8E-23 146.8 14.4 128 193-324 8-137 (153)
40 1vk6_A NADH pyrophosphatase; 1 99.8 4.4E-18 1.5E-22 161.4 16.7 138 184-331 131-268 (269)
41 3shd_A Phosphatase NUDJ; nudix 99.8 7.4E-18 2.5E-22 144.3 16.1 126 193-324 5-131 (153)
42 3q93_A 7,8-dihydro-8-oxoguanin 99.8 5.5E-18 1.9E-22 150.0 15.1 126 192-325 24-149 (176)
43 1nqz_A COA pyrophosphatase (MU 99.8 1.7E-18 5.9E-23 154.9 11.9 130 178-308 19-152 (194)
44 3cng_A Nudix hydrolase; struct 99.8 1.3E-17 4.3E-22 149.2 17.3 130 189-330 36-167 (189)
45 2dsc_A ADP-sugar pyrophosphata 99.8 2.4E-18 8.2E-23 156.9 12.6 159 134-309 16-185 (212)
46 1f3y_A Diadenosine 5',5'''-P1, 99.8 1.9E-18 6.4E-23 149.0 11.3 128 193-328 14-162 (165)
47 3fcm_A Hydrolase, nudix family 99.8 9E-18 3.1E-22 151.0 16.1 135 191-334 43-191 (197)
48 1q27_A Putative nudix hydrolas 99.8 5.2E-18 1.8E-22 148.3 13.1 112 193-307 34-148 (171)
49 2o1c_A DATP pyrophosphohydrola 99.8 4.3E-18 1.5E-22 144.3 11.9 122 194-325 10-147 (150)
50 3o6z_A GDP-mannose pyrophospha 99.8 1.7E-18 5.9E-23 155.4 9.3 151 133-309 3-168 (191)
51 2fvv_A Diphosphoinositol polyp 99.7 2.2E-18 7.4E-23 155.5 9.1 145 193-349 40-188 (194)
52 2azw_A MUTT/nudix family prote 99.7 9.8E-18 3.4E-22 142.2 12.7 122 191-324 16-144 (148)
53 1k2e_A Nudix homolog; nudix/MU 99.7 4.6E-18 1.6E-22 146.9 10.6 118 194-329 2-138 (156)
54 2b06_A MUTT/nudix family prote 99.7 1.4E-17 4.7E-22 142.9 13.1 123 191-324 6-133 (155)
55 1mut_A MUTT, nucleoside tripho 99.7 1.6E-18 5.5E-23 143.5 6.8 117 198-322 9-125 (129)
56 2jvb_A Protein PSU1, mRNA-deca 99.7 2.5E-18 8.5E-23 146.1 8.0 127 195-327 6-136 (146)
57 2pqv_A MUTT/nudix family prote 99.7 2.2E-17 7.4E-22 141.7 13.8 111 194-312 20-134 (154)
58 3fk9_A Mutator MUTT protein; s 99.7 1.7E-17 5.7E-22 148.6 12.3 122 195-326 6-130 (188)
59 3f13_A Putative nudix hydrolas 99.7 3.8E-17 1.3E-21 143.4 13.8 117 193-327 15-131 (163)
60 2a6t_A SPAC19A8.12; alpha/beta 99.7 2.5E-18 8.7E-23 163.1 6.6 195 97-311 11-216 (271)
61 1hzt_A Isopentenyl diphosphate 99.7 1.4E-17 4.7E-22 148.7 10.4 132 194-328 33-174 (190)
62 3q91_A Uridine diphosphate glu 99.7 1.5E-17 5.1E-22 153.1 9.5 116 192-308 35-189 (218)
63 1x51_A A/G-specific adenine DN 99.7 1.6E-16 5.4E-21 136.8 11.7 126 192-325 18-148 (155)
64 2qjo_A Bifunctional NMN adenyl 99.7 2.3E-16 7.7E-21 152.5 13.9 131 189-325 199-339 (341)
65 2qjt_B Nicotinamide-nucleotide 99.7 5.8E-16 2E-20 150.6 16.5 135 188-328 203-349 (352)
66 3e57_A Uncharacterized protein 99.7 8.6E-17 3E-21 147.2 6.4 108 196-307 70-188 (211)
67 3fjy_A Probable MUTT1 protein; 99.6 1.1E-15 3.6E-20 150.3 13.0 119 203-329 36-177 (364)
68 3fsp_A A/G-specific adenine gl 99.6 5.9E-15 2E-19 145.6 12.1 123 193-327 240-362 (369)
69 2dho_A Isopentenyl-diphosphate 99.6 6.9E-14 2.3E-18 129.9 16.1 111 194-307 60-190 (235)
70 2pny_A Isopentenyl-diphosphate 99.5 6.2E-14 2.1E-18 131.2 15.3 111 194-307 71-201 (246)
71 1u20_A U8 snoRNA-binding prote 99.5 6.2E-15 2.1E-19 134.5 6.6 103 196-307 47-165 (212)
72 1q33_A Pyrophosphatase, ADP-ri 99.5 5.6E-13 1.9E-17 127.6 16.8 117 206-332 140-282 (292)
73 3dup_A MUTT/nudix family prote 99.4 1.2E-12 4.3E-17 125.6 14.0 114 193-307 118-242 (300)
74 3qsj_A Nudix hydrolase; struct 99.3 1.2E-11 4.2E-16 114.6 14.4 112 193-305 8-186 (232)
75 2xsq_A U8 snoRNA-decapping enz 99.3 1.4E-12 4.7E-17 119.7 6.7 94 206-305 66-171 (217)
76 3rh7_A Hypothetical oxidoreduc 99.2 2.8E-11 9.6E-16 117.3 11.5 119 192-334 182-301 (321)
77 3kvh_A Protein syndesmos; NUDT 98.8 1.9E-09 6.4E-14 96.5 4.7 90 207-305 46-147 (214)
78 3bho_A Cleavage and polyadenyl 98.8 2.6E-08 8.9E-13 89.9 10.4 62 194-261 59-129 (208)
79 3lq9_A DNA-damage-inducible tr 24.6 39 0.0013 27.9 2.4 35 11-45 78-123 (134)
No 1
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.92 E-value=9.6e-25 Score=201.90 Aligned_cols=167 Identities=17% Similarity=0.278 Sum_probs=130.7
Q ss_pred CCCCCcceeEEEEEEE---eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 017817 186 LPGNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH 262 (365)
Q Consensus 186 lP~~~~h~v~V~~vVi---n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~ 262 (365)
.+.++.+.++|+++|+ +++++|||++|... +..|.|.+|||++|+||++++||+||++||||+++...+.++.+.
T Consensus 6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~ 83 (226)
T 2fb1_A 6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG 83 (226)
T ss_dssp TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEEC
T ss_pred cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeC
Confidence 4566777888988888 45689999998643 357899999999999999999999999999999999888888765
Q ss_pred eccc-cCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc--cCCCCCCC
Q 017817 263 AHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQ 338 (365)
Q Consensus 263 ~~~~-~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~--y~g~~~~~ 338 (365)
.... ..+ ...+.|++.... .....+.+|+.+++|++++++.++.+.+ ..+++.++++++.+ |.++....
T Consensus 84 ~~~r~~~~~~v~~~y~a~~~~--~~~~~~~~e~~~~~W~~~~el~~l~~dh-----~~il~~a~~rlr~~~~y~~i~~~l 156 (226)
T 2fb1_A 84 AIDRDPGERVVSIAYYALINI--NEYDRELVQKHNAYWVNINELPALIFDH-----PEMVDKAREMMKQKASVEPIGFNL 156 (226)
T ss_dssp CTTSSSSSCEEEEEEEEECCT--TSSCHHHHHHTTEEEEETTSCCCBSTTH-----HHHHHHHHHHHHHHHHHSGGGGGG
T ss_pred CCCcCCCceEEEEEEEEEecC--cccccCCccccceEEEEHHHhhhccCCH-----HHHHHHHHHHHHhhcccCchHHHh
Confidence 3322 112 234456665432 2222345788999999999999877654 57888888888776 89999999
Q ss_pred CccCcc-hhhHHHHHHhcC--CCCCC
Q 017817 339 LVSAFD-GQTSSLYYNDSD--TQDTN 361 (365)
Q Consensus 339 l~~~f~-~~~~~ly~~~~~--~~~~~ 361 (365)
+|..|+ .+++.+|+.+.+ .+++|
T Consensus 157 lp~~ftl~~l~~~ye~~~~~~~~~~n 182 (226)
T 2fb1_A 157 LPKLFTLSQLQSLYEAIYGEPMDKRN 182 (226)
T ss_dssp SCSEEEHHHHHHHHHHHHTSCCCHHH
T ss_pred CCccccHHHHHHHHHHHhCCCCCchh
Confidence 999999 999999999997 44444
No 2
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.91 E-value=2.7e-24 Score=200.71 Aligned_cols=167 Identities=21% Similarity=0.362 Sum_probs=127.8
Q ss_pred CCCcceeEEEEEEE---eCCCeEEEEeeecCCCCCCCceEeceeeecC--CCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 017817 188 GNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDE--SEEIFKGAVREVKEETGVDTEFVEVIAFRH 262 (365)
Q Consensus 188 ~~~~h~v~V~~vVi---n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~--GEs~~eAAiREv~EETGl~~~~~~ll~~~~ 262 (365)
.++.+.++|+++|+ +++++|||++|... +..|.|.+|||++++ ||++++||+||++||||+++...+.++.+.
T Consensus 17 ~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~--~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~ 94 (240)
T 3gz5_A 17 AFKAQLLTVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVG 94 (240)
T ss_dssp ----CEEEEEEEEEEEETTEEEEEEEECCSS--SSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEE
T ss_pred ccCCCccEEEEEEEEEeCCCcEEEEEECcCC--CCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeC
Confidence 34455677877777 34579999998632 367899999999999 999999999999999999998888887665
Q ss_pred eccc-cCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc--cCCCCCCC
Q 017817 263 AHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQ 338 (365)
Q Consensus 263 ~~~~-~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~--y~g~~~~~ 338 (365)
.... ..+ ...++|++.... .......+|+.+++|++++++...++...+ +.+++.++++++.+ |.++....
T Consensus 95 ~~~r~~~~~~~~~~y~a~~~~--~~~~~~~~e~~~~~W~~~~el~~~~l~~dh---~~il~~a~~rlr~kl~y~~i~~~l 169 (240)
T 3gz5_A 95 NNSRDARGWSVTVCYTALMSY--QACQIQIASVSDVKWWPLADVLQMPLAFDH---LQLIEQARERLTQKALYSLVPGFA 169 (240)
T ss_dssp ESSSSTTSCEEEEEEEEECCH--HHHHHHHTTCTTEEEEEHHHHTTSCCSTTH---HHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred CCccCCCceEEEEEEEEEecc--cccCCCCCcccceEEecHHHcccCCcchhH---HHHHHHHHHHHHHhcccCcHHHHh
Confidence 5332 222 334555555432 223334678889999999999876666654 78899999998886 99999999
Q ss_pred CccCcc-hhhHHHHHHhcC--CCCCC
Q 017817 339 LVSAFD-GQTSSLYYNDSD--TQDTN 361 (365)
Q Consensus 339 l~~~f~-~~~~~ly~~~~~--~~~~~ 361 (365)
+|.+|+ .+++.+|+.+.+ .+++|
T Consensus 170 lp~~Ftl~~l~~~ye~i~g~~~~~~n 195 (240)
T 3gz5_A 170 LSEPFTLPELQHVHEVLLGKPIQGKS 195 (240)
T ss_dssp SCSSBCHHHHHHHHHHHHTSCCCHHH
T ss_pred CCCCccHHHHHHHHHHHcCCcCCHHH
Confidence 999999 999999999998 45444
No 3
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=99.91 E-value=2.1e-25 Score=183.43 Aligned_cols=88 Identities=30% Similarity=0.556 Sum_probs=81.1
Q ss_pred cccccccccCCCcEEEcCCC----CCCChHHHHHHHHhhhhcceecCeEEEEEEeeccccccchHHHhcceeeecCCcce
Q 017817 97 LRVLDFFDDEYDGVVVDPKR----LPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEY 172 (365)
Q Consensus 97 ~~~~~~~~D~~~gv~v~~~~----~~~~~~~f~~~l~~sl~~W~~~~~r~vWl~l~~~~~~l~~~a~~~gF~~hh~~~~y 172 (365)
..+|+|..|+||||+|+++. .+.|+++|...|++||++||.+++++|||+||+.++++++.+++.||.||||+++|
T Consensus 22 ~~~l~g~~DrygGV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlklpi~~s~lIp~a~~~GF~fHHAe~dy 101 (113)
T 3fxt_A 22 SMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDS 101 (113)
T ss_dssp CCCCCCEECTTSCEEEEHHHHTTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGGGHHHHHHTTCEEEEEEBTE
T ss_pred cccccCCccCcCCEEEeCCccCCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEcCHHHhhhHHHHHHcCceeecCCCCe
Confidence 67999999999999999854 24699999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCCCC
Q 017817 173 LMLTYWIPDGPC 184 (365)
Q Consensus 173 ~~l~~wl~~~~~ 184 (365)
+||++|||+.++
T Consensus 102 lmL~~WLpe~ps 113 (113)
T 3fxt_A 102 STLTLWLREGPS 113 (113)
T ss_dssp EEEEEECCC---
T ss_pred EEEEEecCcCCC
Confidence 999999998863
No 4
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.88 E-value=1.8e-21 Score=184.86 Aligned_cols=164 Identities=18% Similarity=0.258 Sum_probs=122.3
Q ss_pred CCCCCCcceeEEEEEEEe--C---CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce--eeEE
Q 017817 185 VLPGNATHQVGVGGFVIN--D---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEV 257 (365)
Q Consensus 185 ~lP~~~~h~v~V~~vVin--~---~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~--~~~l 257 (365)
.++.++.+.++|+++|+. + +++|||++|... +..|.|.+|||++|+||++++||+||++||||+++. .+..
T Consensus 31 ~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~ 108 (273)
T 2fml_A 31 ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ 108 (273)
T ss_dssp CCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred hcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEE
Confidence 345667777888888875 2 358999998643 357899999999999999999999999999997654 3455
Q ss_pred EEEEeeccc-cCc-cEEEEEEEEEecCCccccCCccceeeEEEEccccccc-----------------------CCCCcC
Q 017817 258 IAFRHAHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK-----------------------QPLIQG 312 (365)
Q Consensus 258 l~~~~~~~~-~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~-----------------------~~~~~~ 312 (365)
++.+..... ..+ ...++|++.... .. ....+|..+++|++++++.+ .++...
T Consensus 109 l~~~~~~~r~~~~~~~~~~y~a~~~~--~~-~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~Lafd 185 (273)
T 2fml_A 109 LHSFSRPDRDPRGWVVTVSYLAFIGE--EP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFD 185 (273)
T ss_dssp EEEECCTTSSTTSSEEEEEEEEECCC--CC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTT
T ss_pred EEEEcCCCCCCCceEEEEEEEEEeCC--CC-CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCccccc
Confidence 554432221 112 344566665532 22 34567899999999997422 234444
Q ss_pred CchHHHHHHHHHHHHhcc--cCCCCCCCCccCcc-hhhHHHHHHhcC
Q 017817 313 DCMFKKVIDICIARLRKR--YCGLYPHQLVSAFD-GQTSSLYYNDSD 356 (365)
Q Consensus 313 ~~~~~~il~~~l~~lr~~--y~g~~~~~l~~~f~-~~~~~ly~~~~~ 356 (365)
+ .+++..++++++.+ |.|+....||+.|| .++|.+|+.+.+
T Consensus 186 H---~~Il~~al~rlr~kl~y~~i~~~llp~~FTl~~l~~~ye~i~g 229 (273)
T 2fml_A 186 H---SEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLG 229 (273)
T ss_dssp H---HHHHHHHHHHHHHHTTTCCGGGGGGCSCBCHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHHHhcCCcHHHHhCCccccHHHHHHHHHHHhC
Confidence 3 67899999998876 99999999999999 999999999987
No 5
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=173.74 Aligned_cols=144 Identities=34% Similarity=0.581 Sum_probs=101.0
Q ss_pred CCCCCCCCcceeEEEEEEEeC-CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE
Q 017817 183 PCVLPGNATHQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR 261 (365)
Q Consensus 183 ~~~lP~~~~h~v~V~~vVin~-~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~ 261 (365)
.+.++.++.+.++|++++++. +++|||++++. ...+.|.+|||++|+||++.+||+||++||||+++....+++..
T Consensus 16 ~~~~~~~~~~~v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~ 92 (199)
T 3h95_A 16 ENLYFQSMSHQVGVAGAVFDESTRKILVVQDRN---KLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIR 92 (199)
T ss_dssp ----------CCEEEEEEEETTTTEEEEEEESS---SSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_pred cccccccCcccceEEEEEEeCCCCEEEEEEEcC---CCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEE
Confidence 345567778889998888885 58999999853 24789999999999999999999999999999999888887754
Q ss_pred eec--cccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817 262 HAH--NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY 331 (365)
Q Consensus 262 ~~~--~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y 331 (365)
..+ +.......++|++........+.++++|+.+++|++++++.++.... .+.+.++..++...+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~--~~~~~~~~~~~~~~~~~~ 162 (199)
T 3h95_A 93 QQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTT--PITSRVARLLLYGYREGF 162 (199)
T ss_dssp ECC---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBC--HHHHHHHHHHHHHHHHCG
T ss_pred eeecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcC--hHHHHHHHHHHhhhhcCC
Confidence 322 22334456778888766556666778999999999999999886433 356666666665554443
No 6
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.84 E-value=1e-20 Score=160.70 Aligned_cols=122 Identities=28% Similarity=0.409 Sum_probs=89.4
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc---
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--- 269 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~--- 269 (365)
.++++++|++ +++|||++++ .|.|.+|||++|+||++.+||+||++||||+++....+++.........+
T Consensus 4 ~~aag~vv~~-~~~vLL~~r~------~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 76 (134)
T 3i7u_A 4 EFSAGGVLFK-DGEVLLIKTP------SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERI 76 (134)
T ss_dssp EEEEEEEEEE-TTEEEEEECT------TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEEE-CCEEEEEEeC------CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceE
Confidence 3567778776 5799999874 47899999999999999999999999999999988888775443222222
Q ss_pred -cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817 270 -KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL 327 (365)
Q Consensus 270 -~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l 327 (365)
....+|.|... ++++.+ ++|+.+++|++++|+.++...+ ..+.+++.+++.+
T Consensus 77 ~~~~~~f~~~~~--~~~~~~-~~E~~~~~W~~~~e~~~~l~~~---~~r~il~~a~~l~ 129 (134)
T 3i7u_A 77 FKTVKYYLMKYK--EGEPRP-SWEVKDAKFFPIKEAKKLLKYK---GDKEIFEKALKLK 129 (134)
T ss_dssp EEEEEEEEEEEE--EECCCC-CTTSSEEEEEEHHHHHHHBCSH---HHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEc--CCcCcC-ChhheEEEEEEHHHHhhhcCCh---HHHHHHHHHHHHH
Confidence 22345555543 234443 4789999999999998875443 2367777776544
No 7
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=7.1e-20 Score=157.36 Aligned_cols=130 Identities=19% Similarity=0.274 Sum_probs=99.6
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 271 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~ 271 (365)
..++|++++++.+++|||++|...+..++|.|.+|||++++||++.+||+||++||||+.+....+++............
T Consensus 7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 86 (153)
T 3grn_A 7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVI 86 (153)
T ss_dssp EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEE
T ss_pred eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEE
Confidence 45678888998899999999975435578999999999999999999999999999999998888887765444443334
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCC-CCcCCchHHHHHHHHHHHH
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP-LIQGDCMFKKVIDICIARL 327 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~-~~~~~~~~~~il~~~l~~l 327 (365)
..+|.+... .+++.. .+|+.+++|++++++.+++ ++. ..+.+++.+.+..
T Consensus 87 ~~~~~~~~~--~~~~~~-~~e~~~~~W~~~~el~~~~~~~~---~~~~~l~~l~~~~ 137 (153)
T 3grn_A 87 AIVFDGGYV--VADVKL-SYEHIEYSWVSLEKILGMETLPA---YFRDFFERFDREN 137 (153)
T ss_dssp EEEEEEEEC--CCCCCC-CTTEEEEEEECHHHHTTCSSSCH---HHHHHHHHHHHHH
T ss_pred EEEEEEEec--CCcEec-CCCcceEEEEEHHHhhhcccchH---HHHHHHHHHhccc
Confidence 444544432 334433 4789999999999999987 655 4567777766543
No 8
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=155.83 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=101.3
Q ss_pred cceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCcc
Q 017817 191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK 270 (365)
Q Consensus 191 ~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~ 270 (365)
.....|++++++.+++|||+++... + +.+.|.+|||++|+||++.+||+||++||||+++....+++..... ...
T Consensus 18 ~~~~~v~~~i~~~~~~vLl~~r~~~-~-~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~~ 92 (156)
T 3gg6_A 18 NVCYVVLAVFLSEQDEVLLIQEAKR-E-CRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG---PSW 92 (156)
T ss_dssp TCEEEEEEECBCTTSEEEEEECCCT-T-STTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TTE
T ss_pred ceEEEEEEEEEeCCCEEEEEEecCC-C-CCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CCE
Confidence 3445677788888999999999632 2 6899999999999999999999999999999999988888876532 233
Q ss_pred EEEEEEEEEecCCccc-cCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCC
Q 017817 271 SDLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG 333 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i-~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g 333 (365)
..++|.+......... ..+++|+.+++|++++++.++.... .+..++..+...++.+..|
T Consensus 93 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~~~~~~~p 153 (156)
T 3gg6_A 93 VRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAH---DILHLVELAAQYRQQARHP 153 (156)
T ss_dssp EEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCT---HHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccch---hHHHHHHHHHHHhhcCCCc
Confidence 4566666654322221 2355789999999999998865433 4567788777777666444
No 9
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.82 E-value=1.9e-19 Score=152.37 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=91.2
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCC--CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPA--FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 271 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~--~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~ 271 (365)
..|++++.+ +++|||++|... .. ++|.|.+|||++++||++.+||+||++||||+++....+++............
T Consensus 7 ~~v~~vi~~-~~~vLL~~r~~~-~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T 3gwy_A 7 EVVAAVIRL-GEKYLCVQRGQT-KFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEIT 84 (140)
T ss_dssp EEEEEEEEE-TTEEEEEEC----------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEE
T ss_pred EEEEEEEEe-CCEEEEEEecCC-CCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEE
Confidence 445566666 789999999643 33 67999999999999999999999999999999999888888765544444444
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 326 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~ 326 (365)
..+|.+... ... ++.+|+.+++|++++++.++++.+.+ +.+++.+.+.
T Consensus 85 ~~~f~~~~~--~~~--~~~~E~~~~~W~~~~el~~~~~~~~~---~~il~~~~~~ 132 (140)
T 3gwy_A 85 MHAFLCHPV--GQR--YVLKEHIAAQWLSTREMAILDWAEAD---KPIVRKISEQ 132 (140)
T ss_dssp EEEEEEEEC--CSC--CCCCSSCEEEEECHHHHTTSCBCGGG---HHHHHHHHC-
T ss_pred EEEEEEEec--CCc--ccccccceeEeccHHHHhhCCCCccc---HHHHHHHHhC
Confidence 556666543 233 34578899999999999999988754 6667666543
No 10
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.82 E-value=1.3e-19 Score=156.45 Aligned_cols=137 Identities=23% Similarity=0.417 Sum_probs=93.3
Q ss_pred CCCCCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEE--E
Q 017817 181 DGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV--I 258 (365)
Q Consensus 181 ~~~~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~l--l 258 (365)
..|..++..+.....+++++++.+++|||++|... ..+.|.|.+|||++|+||++.+||+||++||||+.+....+ +
T Consensus 17 ~gP~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~~-~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~ 95 (158)
T 3hhj_A 17 QGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEG-KSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPL 95 (158)
T ss_dssp ----------CEEEEEEEEEBCTTSEEEEEECCCT-TSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE
T ss_pred CCCccCCCCCceEEEEEEEEEeCCCEEEEEEeCCC-CCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEE
Confidence 34455565556666677888888899999998644 34789999999999999999999999999999999877543 4
Q ss_pred EEEeeccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 259 AFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
+..............+|.+.. ... .++..|..+++|++++++.++++.... +.+++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~---~~il~~~~~ 155 (158)
T 3hhj_A 96 TFASHGYETFHLLMPLYFCSH--YKG--VAQGREGQNLKWIFINDLDKYPMPEAD---KPLVQVLKN 155 (158)
T ss_dssp EEEEEECSSCEEEEEEEEESC--CBS--CCCCTTSCEEEEEEGGGGGGSCCCTTT---HHHHHHHHH
T ss_pred EEEeeccCCcEEEEEEEEEEE--CCC--ccCCccccceEEEcHHHHhhCCCCcch---HHHHHHHHH
Confidence 433333333333333444432 222 344678899999999999999887765 666666554
No 11
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.82 E-value=1.6e-19 Score=157.03 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=86.0
Q ss_pred CCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----
Q 017817 188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH----- 262 (365)
Q Consensus 188 ~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~----- 262 (365)
..+.....+.+++++.+++|||++|......++|.|.+|||++++||++.+||+||++||||+++....++....
T Consensus 22 ~~~~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 101 (165)
T 3oga_A 22 SNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIR 101 (165)
T ss_dssp --CCEEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEE
T ss_pred CCCcceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeeccee
Confidence 333444556666777789999999875554578999999999999999999999999999999998777664321
Q ss_pred -eccccCc---cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHH
Q 017817 263 -AHNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI 322 (365)
Q Consensus 263 -~~~~~~~---~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~ 322 (365)
....... ...+++++........+.. ++|+.+++|++++++.++++.+.+ +.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~~---~~~l~~ 161 (165)
T 3oga_A 102 IKTYADGRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALYDLNVAT---RHTLAL 161 (165)
T ss_dssp EEEC--CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGSCBCHHH---HHHHHH
T ss_pred eEecCCCCceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhCCCCHHH---HHHHHH
Confidence 1111111 1122333333333344433 478999999999999999887643 455543
No 12
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.82 E-value=1.1e-19 Score=157.39 Aligned_cols=122 Identities=20% Similarity=0.365 Sum_probs=87.3
Q ss_pred CCCCCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE
Q 017817 181 DGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF 260 (365)
Q Consensus 181 ~~~~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~ 260 (365)
..+..++..+.++++|++++++ +++|||++|... + +.+.|.+|||++|+||++.+||+||++||||+++....+++.
T Consensus 17 ~~p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~-~-~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 93 (157)
T 4dyw_A 17 QGPGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRA-P-EAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCV 93 (157)
T ss_dssp ---------CCCEEEEEEEEEE-TTEEEEEEECSS-S-STTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEE
T ss_pred CCCCCCCCCCCceeEEEEEEEE-CCEEEEEEecCC-C-CCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEE
Confidence 3455666667778889899988 689999999643 2 789999999999999999999999999999999998888877
Q ss_pred EeeccccCc--cEEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817 261 RHAHNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306 (365)
Q Consensus 261 ~~~~~~~~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~ 306 (365)
......... ....+|.+..... .....+++|+.+++|++++++.+
T Consensus 94 ~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~ 140 (157)
T 4dyw_A 94 VDHIDAANGEHWVAPVYLAHAFSG-EPRVVEPDRHEALGWFALDDLPQ 140 (157)
T ss_dssp EEEEETTTTEEEEEEEEEESEEES-CCCCSCTTTEEEEEEEETTSCCS
T ss_pred EEeeccCCCcEEEEEEEEEEEcCC-CcccCCCCcEeEEEEECHHHccc
Confidence 655443222 2334555544322 11223457899999999999988
No 13
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.81 E-value=1.8e-19 Score=152.47 Aligned_cols=128 Identities=24% Similarity=0.331 Sum_probs=92.3
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeeccccCcc
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE--VIAFRHAHNVAFQK 270 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~--ll~~~~~~~~~~~~ 270 (365)
...+++++++.+++|||++|... ..++|.|.||||++++||++.+||+||++||||+.+.... .+............
T Consensus 8 ~~~~~~vi~~~~~~vLl~~r~~~-~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 86 (144)
T 3r03_A 8 LLVTAAALIDPDGRVLLAQRPPG-KSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHL 86 (144)
T ss_dssp EEEEEEEEBCTTSCEEEEECCTT-SSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEE
T ss_pred eEEEEEEEEcCCCEEEEEEeCCC-CCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEE
Confidence 34566777888899999998644 3478999999999999999999999999999999987753 33333333333333
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHh
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR 328 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr 328 (365)
...+|.+... .. .+...|..+++|++++++.++++.... +.+++.+.+...
T Consensus 87 ~~~~~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~~~ 137 (144)
T 3r03_A 87 LMPLYACRSW--RG--RATAREGQTLAWVRAERLREYPMPPAD---LPLIPILQDWLE 137 (144)
T ss_dssp EEEEEEECCC--BS--CCCCCSSCEEEEECGGGGGGSCCCTTT---TTHHHHHHHHC-
T ss_pred EEEEEEEEec--CC--ccCCCCcceEEEEeHHHhccCCCCcch---HHHHHHHhCccc
Confidence 3344444332 22 234678889999999999999988765 566776665543
No 14
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.81 E-value=2.7e-19 Score=147.99 Aligned_cols=121 Identities=26% Similarity=0.381 Sum_probs=92.5
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 273 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~ 273 (365)
++|++++++.++++||++|.. |.|.+|||++++||++.+||+||++||||+++....+++..............
T Consensus 3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T 1vcd_A 3 LGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREV 76 (126)
T ss_dssp EEEEEEEECTTSCEEEEECTT------SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEE
T ss_pred eEEEEEEEcCCCEEEEEEECC------CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEE
Confidence 578899999889999999852 78999999999999999999999999999999888888766444333333445
Q ss_pred EEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817 274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 326 (365)
Q Consensus 274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~ 326 (365)
+|.+..... . ..++.|+.+++|++++++.++.... ..+.+++.+++.
T Consensus 77 ~~~~~~~~~--~-~~~~~e~~~~~w~~~~el~~~~~~~---~~~~~l~~~~~~ 123 (126)
T 1vcd_A 77 HWFLMRGEG--A-PRLEEGMTGAGWFSPEEARALLAFP---EDLGLLEVALER 123 (126)
T ss_dssp EEEEEEEES--C-CCCCTTCCEEEEECHHHHHHHBCSH---HHHHHHHHHHHH
T ss_pred EEEEEEcCC--C-CCCCcceeeeEEcCHHHHHHhhcCh---hHHHHHHHHHHh
Confidence 566654332 2 2346788999999999999875544 345667666653
No 15
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.81 E-value=6.2e-19 Score=160.08 Aligned_cols=131 Identities=24% Similarity=0.348 Sum_probs=101.8
Q ss_pred CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---
Q 017817 189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--- 265 (365)
Q Consensus 189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~--- 265 (365)
++++.++|+++|++ +++|||+++. ..|.|.+|||++|+||++.+||+||++||||+++....+++......
T Consensus 64 ~~~~~~~v~~vv~~-~~~vLLv~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~ 137 (205)
T 3q1p_A 64 YQTPKVDIRAVVFQ-NEKLLFVKEK-----SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQP 137 (205)
T ss_dssp SCCCEEEEEEEEEE-TTEEEEEEC--------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSC
T ss_pred CCCCcceEEEEEEE-CCEEEEEEEc-----CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCC
Confidence 55667888888887 6899999985 36899999999999999999999999999999999888888765431
Q ss_pred --ccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817 266 --VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY 331 (365)
Q Consensus 266 --~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y 331 (365)
.......++|.|.... +.+.. +.|+.+++|+++++++++.+.... +..+..+++..+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~--~~~~~-~~E~~~~~w~~~~el~~l~~~~~~---~~~i~~~~~~~~~~~ 199 (205)
T 3q1p_A 138 SPSATHVYKIFIGCEIIG--GEKKT-SIETEEVEFFGENELPNLSIARNT---EDQIKEMFAYMKDPQ 199 (205)
T ss_dssp CCCSSCEEEEEEEEEEEE--ECCCC-CTTSCCEEEECTTSCCCBCTTTCC---HHHHHHHHHHHHCTT
T ss_pred CCCCceEEEEEEEEEecC--CccCC-CCcceEEEEEeHHHhhhcCCCccH---HHHHHHHHHHHhCCC
Confidence 2233455677776643 33443 378999999999999988776654 677888888777654
No 16
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.81 E-value=6.2e-20 Score=157.02 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=80.5
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 272 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~ 272 (365)
..+|++++++.++++||+++. +.+.+.+.|++|||++|+||++++||+||++||||+++.....++.....+.......
T Consensus 5 ~~~v~vi~~~~~~~vLLv~~~-r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 83 (145)
T 2w4e_A 5 PRAVFILPVTAQGEAVLIRQF-RYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVF 83 (145)
T ss_dssp CEEEEEEEEETTSEEEEEEEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEE
T ss_pred CCEEEEEEEcCCCEEEEEEEE-ecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceE
Confidence 357888889999999998764 3333566999999999999999999999999999999987777665433333333344
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~ 309 (365)
.+|++..... .....+++|+.+++|++++++.++..
T Consensus 84 ~~f~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~~ 119 (145)
T 2w4e_A 84 YPLLALGVTL-GAAQLEDTETIERVVLPLAEVYRMLE 119 (145)
T ss_dssp EEEEEEEEEE-C--------CEEEEEEEHHHHHHHHH
T ss_pred EEEEEEeccc-CCCCCCCCCeEEEEEEeHHHHHHHHH
Confidence 5555553221 23445678999999999999987644
No 17
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.81 E-value=6.2e-19 Score=159.41 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=110.0
Q ss_pred hcceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeCCCeEE
Q 017817 133 IHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVL 208 (365)
Q Consensus 133 ~~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VL 208 (365)
..|+....+.| |+++......+++.. ...|... . ..+..+|++++++++ +||
T Consensus 8 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~---~~~~~~~-----~---------------~~~~~av~vl~~~~~-~vL 63 (198)
T 1vhz_A 8 QKPTILNVETVARSRLFTVESVDLEFSNGV---RRVYERM-----R---------------PTNREAVMIVPIVDD-HLI 63 (198)
T ss_dssp CCCEEEEEEEEEECSSCEEEEEEEECTTSC---EEEEEEE-----C---------------CCCCCEEEEEEEETT-EEE
T ss_pred CCcEEeeEEEEEECCEEEEEEEEEEcCCCC---EEEEEEE-----E---------------eCCCCEEEEEEEECC-EEE
Confidence 36888877777 889988888876632 1111111 0 001235777778777 999
Q ss_pred EEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccccC
Q 017817 209 VVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKV 288 (365)
Q Consensus 209 Lvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~ 288 (365)
|+++. +.+..++.|++|||++|+||++++||+||++||||+++..+..++.+...+........+|++..... .....
T Consensus 64 Lvrq~-r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~a~~~~~-~~~~~ 141 (198)
T 1vhz_A 64 LIREY-AVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYP-ESLEG 141 (198)
T ss_dssp EEEEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEEE-CCCCC
T ss_pred EEEcc-cCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEEEEEEEeCCc-ccCCC
Confidence 99874 44456789999999999999999999999999999999988888877655554444455566654322 23345
Q ss_pred CccceeeEEEEcccccccCCCCc
Q 017817 289 DDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 289 ~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
+++|..++.|++++++.++....
T Consensus 142 ~~~E~~~~~w~~~~el~~~~~~~ 164 (198)
T 1vhz_A 142 DEPEPLPQVRWPLAHMMDLLEDP 164 (198)
T ss_dssp CCSSCCCEEEEEGGGGGGGGGCT
T ss_pred CCCceEEEEEEEHHHHHHHHHcC
Confidence 67889999999999999875543
No 18
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.81 E-value=2.8e-19 Score=154.42 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=89.9
Q ss_pred EEEEEEE---------eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec-
Q 017817 195 GVGGFVI---------NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH- 264 (365)
Q Consensus 195 ~V~~vVi---------n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~- 264 (365)
++|++++ |++.++||+|+++ .++.|.+|||++|+||++.+||+||++||||+++....++..+...
T Consensus 5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~----~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 80 (155)
T 3u53_A 5 ACGLIIFRRCLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKREL 80 (155)
T ss_dssp EEEEEEEEECCCSSSSSCSEEEEEEEESS----SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEE
T ss_pred EeEEEEEccccccceeCCCcEEEEEEecC----CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeee
Confidence 4667776 4567899999864 3578999999999999999999999999999999877776543221
Q ss_pred ---cccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817 265 ---NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 329 (365)
Q Consensus 265 ---~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~ 329 (365)
.........+|++........+. .++|+.+++|++++|+.++...+ -.+.++..+.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~ea~~~~~~~---~~~~~L~~a~~~L~~ 144 (155)
T 3u53_A 81 NYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLCS 144 (155)
T ss_dssp EEEETTEEEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHHCSH---HHHHHHHHHHHHHHH
T ss_pred ecCCCcceeEEEEEEEEEeccCCccC-CCcceeEEEEeEHHHHHHHcCCH---HHHHHHHHHHHHHhC
Confidence 11122334555555544333433 35789999999999998764433 346677776665543
No 19
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.80 E-value=4.4e-20 Score=159.18 Aligned_cols=116 Identities=23% Similarity=0.267 Sum_probs=81.4
Q ss_pred CcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec----c
Q 017817 190 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH----N 265 (365)
Q Consensus 190 ~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~----~ 265 (365)
+....+|++++++.+++|||++|. .+.|.+|||++|+||++.+||+||++||||+++....+++.+... .
T Consensus 18 ~~~~~~v~~ii~~~~~~vLL~~r~------~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 91 (153)
T 3eds_A 18 LIFXPSVAAVIKNEQGEILFQYPG------GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYT 91 (153)
T ss_dssp CEEEEEEEEEEBCTTCCEEEECC---------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEE
T ss_pred cEEeeeEEEEEEcCCCeEEEEEcC------CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEecccceeee
Confidence 345567888888888999998874 689999999999999999999999999999999988888765211 1
Q ss_pred ccCc----cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817 266 VAFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 313 (365)
Q Consensus 266 ~~~~----~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~ 313 (365)
...+ ....+|.+... .+++..+++|+.+++|++++++.++.++.+.
T Consensus 92 ~~~~~~~~~~~~~f~~~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~p~ 141 (153)
T 3eds_A 92 YSNGDEVEYIVVVFECEVT--SGELRSIDGESLKLQYFSLSEKPPLALPYPD 141 (153)
T ss_dssp CTTSCEEEEEEEEEEEEEE--EECCC-------CEEEECGGGCCCBSSCCCG
T ss_pred cCCCCeEEEEEEEEEEEec--CCccccCCCcEEEEEEECHHHCchhcccCcc
Confidence 1111 12345555543 3445556789999999999999998876653
No 20
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.80 E-value=2.2e-20 Score=165.47 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=88.4
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 273 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~ 273 (365)
.+|++++++.++++||+++.. .+.+++.|.+|||++|+||++.+||+||++||||+++.....++.....+........
T Consensus 42 ~~v~v~i~~~~~~vLL~~r~~-~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 120 (182)
T 2yvp_A 42 AASFVLPVTERGTALLVRQYR-HPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFH 120 (182)
T ss_dssp EEEEEEEBCTTSEEEEEEEEE-GGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEEE
T ss_pred CEEEEEEEcCCCEEEEEEecc-CCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEEE
Confidence 568888888899999998853 3346789999999999999999999999999999999888877655444333334445
Q ss_pred EEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
+|++........+..+++|+.+++|++++++.++....
T Consensus 121 ~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 158 (182)
T 2yvp_A 121 PFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG 158 (182)
T ss_dssp EEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred EEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence 55554222123344577899999999999998865443
No 21
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.80 E-value=5.9e-19 Score=148.38 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=90.2
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 275 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f 275 (365)
+++++++.+++|||++|... ..++|.|.+|||++++||++.+||+||++||||+.+.....++..............+|
T Consensus 11 ~~~~ii~~~~~vLl~~r~~~-~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
T 2rrk_A 11 VVAAIIERDGKILLAQRPAQ-SDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAW 89 (140)
T ss_dssp EEEEEEEETTEEEEEECCSS-CSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEcCCEEEEEEcCCC-CCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEE
Confidence 44445577889999998533 34689999999999999999999999999999999988888776544333333333444
Q ss_pred EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817 276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 326 (365)
Q Consensus 276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~ 326 (365)
.+.... .. ++..|+.+++|++++++.++++.+. .+.+++.+++.
T Consensus 90 ~~~~~~--~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~ 133 (140)
T 2rrk_A 90 HVPDFH--GT--LQAHEHQALVWCSPEEALQYPLAPA---DIPLLEAFMAL 133 (140)
T ss_dssp EESEEE--EC--CCCSSCSCEEEECHHHHTTSCCCTT---HHHHHHHHHHH
T ss_pred EEEeeC--CC--cCCCccceeEEeCHHHHhhCCCChh---HHHHHHHHHHH
Confidence 444321 22 3456788999999999999988764 36677776654
No 22
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.80 E-value=4.9e-19 Score=150.88 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=95.6
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 272 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~ 272 (365)
.+.+.+++++.+++|||++|... ..++|.|.+|||++|+||++.+||+||++||||+.+....+++.............
T Consensus 21 ~~~~~~~i~~~~~~vLl~~r~~~-~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 99 (153)
T 3ees_A 21 WIPVVAGFLRKDGKILVGQRPEN-NSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILI 99 (153)
T ss_dssp EEEEEEEEEEETTEEEEEECCTT-STTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEE
T ss_pred eEEEEEEEEEECCEEEEEEeCCC-CCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEE
Confidence 34556667777799999999644 34789999999999999999999999999999999988887776544443333333
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 329 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~ 329 (365)
.+|.+.... .. ++.+|+.+++|++++++.++++... .+.+++.+.+.++.
T Consensus 100 ~~~~~~~~~--~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~~ 149 (153)
T 3ees_A 100 LFYEILYWK--GE--PRAKHHMMLEWIHPEELKHRNIPEA---NRKILHKIYKALGL 149 (153)
T ss_dssp EEEEECEEE--SC--CCCSSSSEEEEECGGGGGGSCCCHH---HHTTHHHHHHHTTC
T ss_pred EEEEEEECC--CC--cCCCccceEEEecHHHhhhCCCCcc---hHHHHHHHHHhhcc
Confidence 444444322 22 4567889999999999999887763 46677777665543
No 23
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.80 E-value=1.3e-18 Score=146.88 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=90.7
Q ss_pred CCcceeEEEEEEEe--CCCe--EEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec
Q 017817 189 NATHQVGVGGFVIN--DNNE--VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH 264 (365)
Q Consensus 189 ~~~h~v~V~~vVin--~~g~--VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~ 264 (365)
|..+.++|++++++ ++++ +||++|... ++.|.+|||++++||++.+||+||++||||+++....+++.+...
T Consensus 5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~ 80 (139)
T 2yyh_A 5 VKTPLLATDVIIRLWDGENFKGIVLIERKYP----PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDP 80 (139)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCT
T ss_pred ccCCeEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCC
Confidence 44556778888876 6787 999998532 234999999999999999999999999999999888888765542
Q ss_pred ccc--CccEEEEEEEEEecCCccccCCccceeeEEEEcccccc--cCCCCcCCchHHHHHHHHHH
Q 017817 265 NVA--FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV--KQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 265 ~~~--~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~--~~~~~~~~~~~~~il~~~l~ 325 (365)
... ......+|.|... +++. ..+|+.+++|++++++. .+.+.+ ++++..+++
T Consensus 81 ~~~~~~~~~~~~f~~~~~---~~~~-~~~e~~~~~W~~~~el~~~~l~~~~-----~~~l~~~l~ 136 (139)
T 2yyh_A 81 ERDPRAHVVSVVWIGDAQ---GEPK-AGSDAKKVKVYRLEEIPLDKLVFDH-----KKIILDFLK 136 (139)
T ss_dssp TSCTTSCEEEEEEEEEEE---SCCC-CCTTEEEEEEECTTSCCGGGBCTTH-----HHHHHHHHH
T ss_pred CcCCCceEEEEEEEEecC---CccC-CCCCcceEEEEEHHHCCHhhcCCCH-----HHHHHHHHh
Confidence 221 2234456666652 2333 46789999999999999 665543 566666553
No 24
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.80 E-value=2e-19 Score=163.40 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=100.7
Q ss_pred hcceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeCCCeEE
Q 017817 133 IHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVL 208 (365)
Q Consensus 133 ~~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VL 208 (365)
..|+..+++.| |+++..+...+++.. ...+ +++ .+..+|++++++.+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~---~~~~-----~~~-----------------~~~~av~v~i~~~~~~vL 58 (207)
T 1mk1_A 4 HDFETISSETLHTGAIFALRRDQVRMPGGG---IVTR-----EVV-----------------EHFGAVAIVAMDDNGNIP 58 (207)
T ss_dssp --CCEEEEEEEEECSSEEEEEEEEC--------CEEE-----EEE-----------------EECCEEEEEECCTTSEEE
T ss_pred CCcEEEeEEEEEeCCEEEEEEEEEECCCCC---EEEE-----EEE-----------------eCCCEEEEEEEcCCCEEE
Confidence 56999888887 999999888887742 1111 111 112467788888899999
Q ss_pred EEeeecCCCCCCCceEeceeeec-CCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccc-
Q 017817 209 VVQEKYCNPAFAGLWKLPTGFID-ESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEI- 286 (365)
Q Consensus 209 Lvrr~~~~~~~~g~W~lPGG~ve-~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i- 286 (365)
|+++. +.+.+.+.|++|||++| +||++++||+||++||||+++.....++.+...+........+|++.........
T Consensus 59 Lvrr~-r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 137 (207)
T 1mk1_A 59 MVYQY-RHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPE 137 (207)
T ss_dssp EEEEE-ETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC--
T ss_pred EEEee-cCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEEEEEEEEccccCCCCC
Confidence 99885 44456789999999999 9999999999999999999998888887654444333333455555543221111
Q ss_pred cCCccceeeEEEEcccccccCCCCc
Q 017817 287 KVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 287 ~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
..+++|+.++.|++++++.++....
T Consensus 138 ~~~~~E~~~~~Wv~~~el~~~~~~~ 162 (207)
T 1mk1_A 138 AHHEEADMTMGWYPIAEAARRVLRG 162 (207)
T ss_dssp --------CEEEEEHHHHHHHHHTT
T ss_pred CCCCCceEEEEEEEHHHHHHHHHcC
Confidence 2457789999999999999875544
No 25
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.80 E-value=3.3e-19 Score=155.10 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=95.2
Q ss_pred cceeEEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc
Q 017817 191 THQVGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ 269 (365)
Q Consensus 191 ~h~v~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~ 269 (365)
...+++.+++++++ ++|||++|. . ..+.|.|.+|||++++||++.+||+||++||||+++....+++.........+
T Consensus 8 ~~~~~v~~vi~~~~~~~vLL~~r~-~-~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 85 (161)
T 3exq_A 8 PVELVTMVMVTDPETQRVLVEDKV-N-VPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ 85 (161)
T ss_dssp CEEEEEEEEEBCTTTCCEEEECCC-C-CTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS
T ss_pred CceEEEEEEEEeCCCCEEEEEEcc-C-CCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCC
Confidence 34566777788776 799999986 3 34778899999999999999999999999999999998888887665543333
Q ss_pred cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
.....+++........ +...|..+++|++++++.++++.+. .+++++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~ 136 (161)
T 3exq_A 86 HRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAAS---LPEFLQVFTG 136 (161)
T ss_dssp SEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTT---HHHHHHHHTT
T ss_pred eEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChH---HHHHHHHHhh
Confidence 3333444443322233 3456778999999999999888764 4667777665
No 26
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.80 E-value=1.2e-18 Score=149.71 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=89.5
Q ss_pred cceeEEEEEEEeCCCeEEEEeeecC--CCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-
Q 017817 191 THQVGVGGFVINDNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA- 267 (365)
Q Consensus 191 ~h~v~V~~vVin~~g~VLLvrr~~~--~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~- 267 (365)
....++++++++.++++||++|... ...+++.|.+|||++|+||++.+||+||++||||+++....+++........
T Consensus 11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~ 90 (159)
T 1sjy_A 11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG 90 (159)
T ss_dssp CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence 3456788888888899999998531 3346799999999999999999999999999999999888888766543222
Q ss_pred CccEEEEEEEEEecCCcc-ccC-CccceeeEEEEcccccccCCCCc
Q 017817 268 FQKSDLFFICMLKPLSTE-IKV-DDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 268 ~~~~~~~f~~~l~~~~~~-i~~-~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
......+|.+... .+. +.+ +++|+.++.|++++++.++....
T Consensus 91 ~~~~~~~f~~~~~--~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 134 (159)
T 1sjy_A 91 VLILRHVWLAEPE--PGQTLAPAFTDEIAEASFVSREDFAQLYAAG 134 (159)
T ss_dssp CEEEEEEEEEEEC--SSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred ceEEEEEEEEEcc--CCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence 2334455555543 233 555 67899999999999998875543
No 27
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.80 E-value=3.5e-19 Score=148.68 Aligned_cols=124 Identities=29% Similarity=0.422 Sum_probs=91.9
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc----C
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----F 268 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~----~ 268 (365)
..+|++++++ +++|||++|. . +.|.+|||++++||++.+||+||++||||+++....+++........ .
T Consensus 4 ~~~~~~vi~~-~~~vLl~~r~-----~-~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 76 (134)
T 2pbt_A 4 EFSAGGVLFK-DGEVLLIKTP-----S-NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERI 76 (134)
T ss_dssp EEEEEEEEEE-TTEEEEEECT-----T-SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEE
T ss_pred ceEEEEEEEE-CCEEEEEEeC-----C-CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCcEE
Confidence 3567788888 5799999984 2 89999999999999999999999999999999888888765333321 1
Q ss_pred ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817 269 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 329 (365)
Q Consensus 269 ~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~ 329 (365)
.....+|.+.... ....+.+ |+.+++|++++++.++...+. .+.++..+++.+++
T Consensus 77 ~~~~~~~~~~~~~--~~~~~~~-e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~~ 131 (134)
T 2pbt_A 77 FKTVKYYLMKYKE--GEPRPSW-EVKDAKFFPIKEAKKLLKYKG---DKEIFEKALKLKEK 131 (134)
T ss_dssp EEEEEEEEEEEEE--ECCCCCT-TSSEEEEEEHHHHHHHCCSHH---HHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEecC--CCcCCCc-ceeEEEEEcHHHHHhhhcchh---HHHHHHHHHHHhhh
Confidence 2233445554432 3333333 899999999999998766553 46778877776653
No 28
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.80 E-value=7e-19 Score=147.79 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=90.1
Q ss_pred eEEEEEEEeC---CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE----EEEeeccc
Q 017817 194 VGVGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI----AFRHAHNV 266 (365)
Q Consensus 194 v~V~~vVin~---~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll----~~~~~~~~ 266 (365)
.+|++++++. +++|||++++. .++.|.+|||++++||++.+||+||++||||+.++...++ +.......
T Consensus 4 ~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 79 (138)
T 1ktg_A 4 KAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK 79 (138)
T ss_dssp EEEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET
T ss_pred EEEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC
Confidence 5677888875 46899999852 4679999999999999999999999999999966555444 22222222
Q ss_pred cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHh
Q 017817 267 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR 328 (365)
Q Consensus 267 ~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr 328 (365)
.......+|.+..... ....+++|+.+++|++++++.++.... ..+.+++.+.++++
T Consensus 80 ~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~l~ 136 (138)
T 1ktg_A 80 GKPKSVKYWLAKLNNP--DDVQLSHEHQNWKWCELEDAIKIADYA---EMGSLLRKFSAFLA 136 (138)
T ss_dssp TEEEEEEEEEEEECSC--CCCCCCTTEEEEEEECHHHHHHHHCCH---HHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEecCC--cccCCCchhcEeEeccHHHHHHhhccc---hHHHHHHHHHHHhh
Confidence 2233455666665432 233457899999999999999976554 34667777776664
No 29
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.79 E-value=3.9e-19 Score=151.83 Aligned_cols=128 Identities=18% Similarity=0.227 Sum_probs=89.3
Q ss_pred eEEEEEEE---eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEee--cc-
Q 017817 194 VGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHA--HN- 265 (365)
Q Consensus 194 v~V~~vVi---n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~--~~- 265 (365)
.+|.++++ +++++|||++|.. .|.|.+|||++|+||++.+||+||++||||+++... .+...... ..
T Consensus 6 ~~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 80 (149)
T 3son_A 6 FQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHF 80 (149)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESS-----SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGT
T ss_pred eEEEEEEEEecCCCeEEEEEEEcC-----CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceee
Confidence 34555554 4668999999862 489999999999999999999999999999998764 22222111 11
Q ss_pred ---ccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc
Q 017817 266 ---VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 330 (365)
Q Consensus 266 ---~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~ 330 (365)
.......++|.+......+++.+ ++|+.+++|++++++.++...+ ..+.++..+.++++.+
T Consensus 81 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~l~~~ 144 (149)
T 3son_A 81 SFNKPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWD---SNKTALYELNERLKNN 144 (149)
T ss_dssp CSSSCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCH---HHHHHHHHHHHHHHTT
T ss_pred ccCCceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCH---HHHHHHHHHHHHHhhc
Confidence 11122334555554322345554 5899999999999999987665 3477888888777654
No 30
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.79 E-value=1.2e-18 Score=153.68 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=94.0
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 272 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~ 272 (365)
.++++++++.+++|||++|.......+|.|.+ |||++++||++.+||+||++||||+++.....++.+...........
T Consensus 38 ~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 117 (180)
T 2fkb_A 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG 117 (180)
T ss_dssp EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred eEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEE
Confidence 46778888888999999886544445889999 99999999999999999999999999877777776554433323333
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccC--CCCcCCchHHHHHHHHHHH
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ--PLIQGDCMFKKVIDICIAR 326 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~--~~~~~~~~~~~il~~~l~~ 326 (365)
.+|.+. ....+.++++|+.+++|++++++.++ ++.+ ....++..+++.
T Consensus 118 ~~f~~~---~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~---~~~~~l~~~~~~ 167 (180)
T 2fkb_A 118 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARCDEFTP---DSLKALALWMKR 167 (180)
T ss_dssp EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTGGGBCH---HHHHHHHHHHHH
T ss_pred EEEEEe---cCCCcCCChhHhheEEEecHHHHHHHHHHhCC---cHHHHHHHHHHh
Confidence 445554 23455566789999999999999987 4443 234556555543
No 31
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.79 E-value=2.3e-19 Score=159.94 Aligned_cols=134 Identities=16% Similarity=0.238 Sum_probs=96.7
Q ss_pred eEEEEEEEe--C-----CCeEEEEeeec-----CCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE
Q 017817 194 VGVGGFVIN--D-----NNEVLVVQEKY-----CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR 261 (365)
Q Consensus 194 v~V~~vVin--~-----~g~VLLvrr~~-----~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~ 261 (365)
++|+++|+. + +++|||++|.. ......|.|.+|||++|+||++.+||+||++||||+++....+++.+
T Consensus 28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~ 107 (187)
T 3i9x_A 28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF 107 (187)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence 556665554 2 36899999842 12347899999999999999999999999999999999988988876
Q ss_pred eeccccC-c-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc
Q 017817 262 HAHNVAF-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 330 (365)
Q Consensus 262 ~~~~~~~-~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~ 330 (365)
....... + ....+|++.............+|+.+++|++++++.++++...+ +.+|..++++++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~---~~il~~a~~~l~~~ 175 (187)
T 3i9x_A 108 DKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDH---LDMLKKAFSAITEE 175 (187)
T ss_dssp CCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTH---HHHHHHHHHHHHHH
T ss_pred cCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccH---HHHHHHHHHHHHhh
Confidence 5433221 1 23344444433211111234678889999999999988777754 77888888888765
No 32
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.79 E-value=1.5e-18 Score=151.75 Aligned_cols=133 Identities=24% Similarity=0.358 Sum_probs=95.1
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 271 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~ 271 (365)
..++|++++++ +++|||++|.. ..+.|.+|||++|+||++.+||+||++||||+++....+++............
T Consensus 22 ~~~~v~~ii~~-~~~vLL~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 96 (171)
T 3id9_A 22 MQVRVTGILIE-DEKVLLVKQKV----ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLL 96 (171)
T ss_dssp CEEEEEEEEEE-TTEEEEEECSS----TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEE
T ss_pred eEEEEEEEEEE-CCEEEEEEEEC----CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCcEE
Confidence 34667777776 58999999853 37899999999999999999999999999999998888888776655444445
Q ss_pred EEEEEEEEecCCcccc-----CCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCCCC
Q 017817 272 DLFFICMLKPLSTEIK-----VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLY 335 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~-----~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g~~ 335 (365)
.++|.+.... +++. .+.+|+.+++|++++++.++++.... +.+++.++.. ...+.++.
T Consensus 97 ~~~~~~~~~~--~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~---~~~l~~~~~~-~~~~~~l~ 159 (171)
T 3id9_A 97 HITFLLERIE--GEITLPSNEFDHNPIHDVQMVPINELSYYGFSETF---INLISGGLAN-AGSYQGLK 159 (171)
T ss_dssp EEEEEEEEC---------------CCCCCEEEEETGGGGGGTCCTTC---SHHHHHGGGG-TTCBCCC-
T ss_pred EEEEEEEEcC--CcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHH---HHHHHHhhcc-ccceeccc
Confidence 5566665432 2222 35688999999999999999887754 4556665432 22344444
No 33
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.79 E-value=1.4e-18 Score=152.32 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=82.3
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 273 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~ 273 (365)
.+|++++++ ++++||+++. +.+.+++.|.+|||++|+||++++||+||++||||+ +.....++.....+........
T Consensus 35 ~~v~vii~~-~~~vLL~~~~-r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~~ 111 (170)
T 1v8y_A 35 PAVAVIALR-EGRMLFVRQM-RPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKTH 111 (170)
T ss_dssp CEEEEEEEE-TTEEEEEECC-BTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEEE
T ss_pred CeEEEEEEE-CCEEEEEEEE-eCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEEE
Confidence 468888888 8999999874 333578899999999999999999999999999999 8888888766544444344555
Q ss_pred EEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
+|++..... .....+++|+.+++|++++++.++....
T Consensus 112 ~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~ 148 (170)
T 1v8y_A 112 VFLAENLKE-VEAHPDEDEAIEVVWMRPEEALERHQRG 148 (170)
T ss_dssp EEEEEEEEE-CC--------CEEEEECHHHHHHHHHTT
T ss_pred EEEEEeccc-cCCCCCCCceEEEEEEEHHHHHHHHHCC
Confidence 666654321 3334467889999999999998865433
No 34
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.79 E-value=1.3e-18 Score=150.58 Aligned_cols=122 Identities=21% Similarity=0.208 Sum_probs=86.4
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe----------
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH---------- 262 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~---------- 262 (365)
..+|++++++ +++|||++|+ ..|.|.+|||++|+||++.+||+||++||||+++....+++...
T Consensus 6 ~~~v~~vi~~-~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 79 (159)
T 3f6a_A 6 HFTVSVFIVC-KDKVLLHLHK-----KAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEK 79 (159)
T ss_dssp CEEEEEEEEE-TTEEEEEECS-----SSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCE
T ss_pred eEEEEEEEEE-CCEEEEEEcC-----CCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccc
Confidence 3557778887 6899999985 36899999999999999999999999999999988766653210
Q ss_pred --e-------ccccCc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817 263 --A-------HNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 324 (365)
Q Consensus 263 --~-------~~~~~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l 324 (365)
. +..... ...++|.|.. ..+.+.++++|+.+++|++++++.++++.+. .++.+.+.+.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~--~~~~l~~~~~ 148 (159)
T 3f6a_A 80 LLINPIHTILGDVSPNHSHIDFVYYATT--TSFETSPEIGESKILKWYSKEDLKNAHNIQE--NILVMATEAL 148 (159)
T ss_dssp EECCCSEEEEECSSSSSCEEEEEEEEEC--SCSCCCCCTTSCCCEEEECSSSSTTCSSSCH--HHHHHHHHHH
T ss_pred cccCccccccccCCCCceEEEEEEEEEe--CCCCcCCCCCcccceEEeeHHHHhhCcCCCh--hHHHHHHHHH
Confidence 0 000011 2234455543 3455555678999999999999999885553 2344444443
No 35
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.79 E-value=2.3e-18 Score=148.17 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=86.1
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccccC-
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNVAF- 268 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~--~~~ll~~~~~~~~~~- 268 (365)
+.++|++++++.+++|||++|...+ ..|.|.+|||++++||++.+||+||++||||+.+. ...+++.........
T Consensus 17 ~~~~v~~vi~~~~~~vLl~~r~~~~--~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 94 (160)
T 1rya_A 17 PLVSLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF 94 (160)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSS--STTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBT
T ss_pred cEEEEEEEEEcCCCEEEEEeccCCC--CCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccc
Confidence 3477888999888999999996432 58999999999999999999999999999999953 566666543322111
Q ss_pred -------ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817 269 -------QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 269 -------~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
.....+|.+.. ...++..+.+|+.+++|++++++.++++.+
T Consensus 95 ~~~~~~~~~~~~~f~~~~--~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 142 (160)
T 1rya_A 95 SGTDFTTHYVVLGFRFRV--SEEELLLPDEQHDDYRWLTSDALLASDNVH 142 (160)
T ss_dssp TBSSSCEEEEEEEEEEEC--CGGGCCCCSSSEEEEEEECHHHHHHCTTBC
T ss_pred cCCCcCcEEEEEEEEEEc--CccccccCCCccceEEEecHHHHhhccccC
Confidence 12233444443 234455567899999999999999987654
No 36
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.78 E-value=2.5e-18 Score=150.50 Aligned_cols=129 Identities=20% Similarity=0.314 Sum_probs=92.2
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee-----ccc
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA-----HNV 266 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~-----~~~ 266 (365)
.+.+|++++++.+++|||++|. ..+.|.+|||++++||++.+||+||++||||+++....+++.... .+.
T Consensus 7 ~~~~v~~~i~~~~~~vLl~~r~-----~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
T 2kdv_A 7 YRPNVGIVICNRQGQVMWARRF-----GQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPK 81 (164)
T ss_dssp EEEEEEEEEECTTSEEEEEEET-----TCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCT
T ss_pred CCcEEEEEEEccCCEEEEEEEc-----CCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCc
Confidence 4567888999988999999885 368999999999999999999999999999999988888776421 111
Q ss_pred ----------cCccEEEEEEEEEecCCccccCC---ccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 267 ----------AFQKSDLFFICMLKPLSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 267 ----------~~~~~~~~f~~~l~~~~~~i~~~---~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
..+....+|++........+.++ ..|+.+++|++++++.+........+++.++..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~ 153 (164)
T 2kdv_A 82 RLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFAS 153 (164)
T ss_dssp TTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHH
T ss_pred ceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 11224567777764433334433 358999999999998765443333345555544443
No 37
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.78 E-value=2.8e-18 Score=155.88 Aligned_cols=131 Identities=26% Similarity=0.489 Sum_probs=100.1
Q ss_pred CCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc-
Q 017817 188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV- 266 (365)
Q Consensus 188 ~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~- 266 (365)
.|+++.++|.++|+++ ++|||++|. .+.|.+|||++|+||++.+||+||++||||+++....+++.......
T Consensus 65 ~y~~~~~~v~~vv~~~-~~vLLvrr~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 137 (206)
T 3o8s_A 65 GYQTPKLDTRAAIFQE-DKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNN 137 (206)
T ss_dssp ---CCEEEEEEEEEET-TEEEEEECT------TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHC
T ss_pred CCCCCCccEEEEEEEC-CEEEEEEec------CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccC
Confidence 3566678888888875 899999984 68999999999999999999999999999999998888887652211
Q ss_pred ----cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817 267 ----AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY 331 (365)
Q Consensus 267 ----~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y 331 (365)
......++|.|.... +.+.. +.|+.+++|+++++++++++.... ++++..+++..+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~E~~~~~w~~~~el~~l~~~~~~---~~~l~~~~~~~~~~~ 200 (206)
T 3o8s_A 138 PAKSAHRVTKVFILCRLLG--GEFQP-NSETVASGFFSLDDLPPLYLGKNT---AEQLALCLEASRSEH 200 (206)
T ss_dssp C-----CEEEEEEEEEEEE--ECCCC-CSSCSEEEEECTTSCCCBCTTTCC---HHHHHHHHHHHHCSS
T ss_pred CCCCCceEEEEEEEEEecC--CeecC-CCCceEEEEEeHHHhhhccCCCch---HHHHHHHHHHHHCCC
Confidence 223445666676543 33333 378999999999999998876643 777888888777653
No 38
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.78 E-value=8.5e-19 Score=159.82 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=102.8
Q ss_pred hcceecCeEEE---EEEeeccccc--cchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEe-CCCe
Q 017817 133 IHWRRMNKKGI---WLKLPLENAE--LVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNE 206 (365)
Q Consensus 133 ~~W~~~~~r~v---Wl~l~~~~~~--l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin-~~g~ 206 (365)
..|+..+++.| |+++...... +++........+ +++ .+..+|++++++ ++++
T Consensus 14 ~~~~~~~~~~v~~g~~~v~~~~~~~~~~~g~~~~~~~r-----~~~-----------------~~~~av~vl~~~~~~~~ 71 (209)
T 1g0s_A 14 NDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSHEVRR-----EIF-----------------ERGHAAVLLPFDPVRDE 71 (209)
T ss_dssp GGEEEEEEEEEEESSSEEEEEEEEEBCTTSCBCCCEEE-----EEE-----------------ECCCEEEEEEEETTTTE
T ss_pred CCcEEEEEEEEEeeeEEEEEEEEEEEcCCCCcceEEEE-----EEE-----------------eCCCEEEEEEEECCCCE
Confidence 46888887776 8777776654 444210011111 111 112468888888 5789
Q ss_pred EEEEeeecCCCCC-----CCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEec
Q 017817 207 VLVVQEKYCNPAF-----AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKP 281 (365)
Q Consensus 207 VLLvrr~~~~~~~-----~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~ 281 (365)
|||+++. +++.. ++.|++|||++|+||++++||+||++||||+.+..+..++.+...++.......+|++....
T Consensus 72 vLLvrq~-R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~~~~~~~~f~a~~~~ 150 (209)
T 1g0s_A 72 VVLIEQI-RIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDA 150 (209)
T ss_dssp EEEEEEE-CGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTBCCEEEEEEEECCG
T ss_pred EEEEEee-cccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCccCcEEEEEEEEEcc
Confidence 9999873 33322 57899999999999999999999999999999988888877655555444455566666422
Q ss_pred C--Cc-cccCCccceeeEEEEcccccccCCCC
Q 017817 282 L--ST-EIKVDDLEIKGAKWMPFMEFVKQPLI 310 (365)
Q Consensus 282 ~--~~-~i~~~~~Ei~~~~Wv~leEl~~~~~~ 310 (365)
. .+ ....+++|..++.|++++++.++...
T Consensus 151 ~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~ 182 (209)
T 1g0s_A 151 TTASGIHGLADENEDIRVHVVSREQAYQWVEE 182 (209)
T ss_dssp GGCC--------CCSCEEEEEEHHHHHHHHHT
T ss_pred ccccCCCCCCCCCcEEEEEEEEHHHHHHHHHc
Confidence 1 11 12346778889999999999886443
No 39
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.78 E-value=2.6e-18 Score=146.80 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=86.4
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc--c
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--K 270 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~--~ 270 (365)
.++|.+++ +.+++|||++|... .. ++.|.+|||++++||++.+||+||++||||+++....+++.........+ .
T Consensus 8 ~~~v~~ii-~~~~~vLl~~r~~~-~~-~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 84 (153)
T 2b0v_A 8 NVTVAAVI-EQDDKYLLVEEIPR-GT-AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY 84 (153)
T ss_dssp EEEEEEEC-EETTEEEEEEECSS-SS-CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred CEEEEEEE-eeCCEEEEEEEcCC-CC-CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEE
Confidence 34555544 46789999998533 23 78999999999999999999999999999999988888876543222112 2
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 324 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l 324 (365)
...+|.+..... ......++|+.+++|++++++.++........+++++..++
T Consensus 85 ~~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~~ 137 (153)
T 2b0v_A 85 LRFTFSGQVVSF-DPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYH 137 (153)
T ss_dssp EEEEEEEEEEEE-CTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHH
T ss_pred EEEEEEEEeCCC-CCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHHH
Confidence 223455544321 11234567899999999999998622222224455554443
No 40
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.77 E-value=4.4e-18 Score=161.37 Aligned_cols=138 Identities=19% Similarity=0.270 Sum_probs=103.2
Q ss_pred CCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 017817 184 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA 263 (365)
Q Consensus 184 ~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~ 263 (365)
|....||...++|.+++ +.+++|||+++... ..|.|.+|||++|+||++++||+||++||||+++....+++....
T Consensus 131 C~~~~yp~~~~~viv~v-~~~~~vLL~rr~~~---~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~ 206 (269)
T 1vk6_A 131 CRERYYPQIAPCIIVAI-RRDDSILLAQHTRH---RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW 206 (269)
T ss_dssp SSCEECCCCEEEEEEEE-EETTEEEEEEETTT---CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred CCCEecCCCCcEEEEEE-EeCCEEEEEEecCC---CCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEec
Confidence 34455666666665444 45689999998532 268999999999999999999999999999999998888876533
Q ss_pred ccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817 264 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY 331 (365)
Q Consensus 264 ~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y 331 (365)
... ....++|.+... ++++.++++|+.+++|++++|++.++... .+.+.+++.++++++..|
T Consensus 207 ~~~--~~~~~~f~a~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~--si~~~li~~~l~~~r~~~ 268 (269)
T 1vk6_A 207 PFP--QSLMTAFMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPG--TVARRLIEDTVAMCRAEY 268 (269)
T ss_dssp ETT--EEEEEEEEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTT--SHHHHHHHHHHHHHHHCC
T ss_pred CCC--CEEEEEEEEEEC--CCCcCCCCcceEEEEEEEHHHhhhcccCc--HHHHHHHHHHHHHHHhhc
Confidence 211 223455555543 34566677899999999999999875543 477889999998887654
No 41
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.77 E-value=7.4e-18 Score=144.31 Aligned_cols=126 Identities=21% Similarity=0.346 Sum_probs=88.2
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-ccCccE
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-VAFQKS 271 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~-~~~~~~ 271 (365)
.++|++++ +.+++|||++|. . ...+.|.+|||++|+||++.+||+||++||||+++....+++...... ......
T Consensus 5 ~~~v~~ii-~~~~~vLl~~r~-~--~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T 3shd_A 5 HVTVACVV-HAEGKFLVVEET-I--NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFL 80 (153)
T ss_dssp EEEEEEEE-EETTEEEEEEEE-E--TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEE
T ss_pred ceEEEEEE-EeCCEEEEEEec-C--CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEE
Confidence 35555554 457899999985 2 257889999999999999999999999999999999888887764332 222334
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 324 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l 324 (365)
..+|.+..... ....++++|+.+++|++++++...+... ....+.++..++
T Consensus 81 ~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~l~~~~ 131 (153)
T 3shd_A 81 RFLFAIELEQI-CPTQPHDSDIDCCRWVSAEEILQASNLR-SPLVAESIRCYQ 131 (153)
T ss_dssp EEEEEEECSSC-CCCCCCSTTCCEEEEECHHHHHTCSCBS-STHHHHHHHHHH
T ss_pred EEEEEEEcccc-CcCCCCcccceeeEEecHHHhhcccccc-CchHHHHHHHHH
Confidence 45666655322 2245567899999999999994332222 124445555554
No 42
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.77 E-value=5.5e-18 Score=150.02 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=89.3
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 271 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~ 271 (365)
+++++ +++++.+++|||++|... .+.|.|.+|||++|+||++.+||+||++||||+++....+++............
T Consensus 24 ~~~~~-~~vi~~~~~vLL~~r~~~--~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 100 (176)
T 3q93_A 24 SRLYT-LVLVLQPQRVLLGMKKRG--FGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL 100 (176)
T ss_dssp EEEEE-EEEEECSSEEEEEEECSS--TTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCE
T ss_pred CcEEE-EEEEEeCCEEEEEEEcCC--CCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcE
Confidence 34434 555667899999998533 368999999999999999999999999999999998888888765443332222
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
...+++......+.+ ...|..+++|++++++.++++.+.+ +.++..+++
T Consensus 101 ~~~~~f~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~ 149 (176)
T 3q93_A 101 MDVHVFCTDSIQGTP--VESDEMRPCWFQLDQIPFKDMWPDD---SYWFPLLLQ 149 (176)
T ss_dssp EEEEEEEESCEESCC--CCCSSEEEEEEETTCCCGGGBCTTH---HHHHHHHHT
T ss_pred EEEEEEEEECCCCCc--CCCcceeeEEeeHHHccccccCcch---HHHHHHHHc
Confidence 222333332222222 3456678899999999998887753 556666553
No 43
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.77 E-value=1.7e-18 Score=154.86 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=88.8
Q ss_pred cccCCCCCCCCCCcceeEEEEEEEeCCC--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee
Q 017817 178 WIPDGPCVLPGNATHQVGVGGFVINDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255 (365)
Q Consensus 178 wl~~~~~~lP~~~~h~v~V~~vVin~~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~ 255 (365)
|+...+...+..+..+.++++++++.++ +|||++|.......+|.|.+|||++|+||++++||+||++||||+++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~ 98 (194)
T 1nqz_A 19 WLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAV 98 (194)
T ss_dssp CBCC----------CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGC
T ss_pred HHhhcChhhccCCCCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccce
Confidence 3443333334445566677777778777 99999986543346899999999999999999999999999999999988
Q ss_pred EEEEEEeeccccCccEEEEEEEEEecCCcc-ccCCccceeeEEEEccccc-ccCC
Q 017817 256 EVIAFRHAHNVAFQKSDLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEF-VKQP 308 (365)
Q Consensus 256 ~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~-i~~~~~Ei~~~~Wv~leEl-~~~~ 308 (365)
.+++.........+....+|++.... ..+ ...+++|+.+++|++++++ .+..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~ 152 (194)
T 1nqz_A 99 TLLGELDDVFTPVGFHVTPVLGRIAP-EALDTLRVTPEVAQIITPTLAELRAVPL 152 (194)
T ss_dssp EEEEECCCEEETTTEEEEEEEEEECG-GGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred EEEEEccCccCCCCeEEEEEEEEecC-CccccCCCccceeEEEEEEHHHhccCCC
Confidence 88876654444444445566666532 223 4456789999999999999 7643
No 44
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.77 E-value=1.3e-17 Score=149.18 Aligned_cols=130 Identities=20% Similarity=0.302 Sum_probs=93.8
Q ss_pred CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC
Q 017817 189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF 268 (365)
Q Consensus 189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~ 268 (365)
+..+.++|++++++ +++|||++|...+ ..+.|.+|||++|+||++++||+||++||||+++....+++..... . .
T Consensus 36 ~~~~~~~v~~ii~~-~~~vLL~~r~~~~--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~-~-~ 110 (189)
T 3cng_A 36 YQNPKVIVGCIPEW-ENKVLLCKRAIAP--YRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLP-H-I 110 (189)
T ss_dssp CCCCEEEEEEEEEE-TTEEEEEEESSSS--STTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEG-G-G
T ss_pred CCCCceEEEEEEEe-CCEEEEEEccCCC--CCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEecC-C-C
Confidence 33445678778877 7899999986432 4789999999999999999999999999999999877777664332 1 2
Q ss_pred ccEEEEEEEEEecCCccccCCccceeeEEEEcccccc--cCCCCcCCchHHHHHHHHHHHHhcc
Q 017817 269 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV--KQPLIQGDCMFKKVIDICIARLRKR 330 (365)
Q Consensus 269 ~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~--~~~~~~~~~~~~~il~~~l~~lr~~ 330 (365)
....++|.+... ...+. ..+|+.+++|++++++. .+.++ ..+.++..+++..+..
T Consensus 111 ~~~~~~f~~~~~--~~~~~-~~~E~~~~~W~~~~el~~~~l~~~----~~~~~l~~~l~~~~~~ 167 (189)
T 3cng_A 111 SQVYMLFRAKLL--DLDFF-PGIESLEVRLFGEQEIPWNDIAFR----VIHDPLKRYMEERHHG 167 (189)
T ss_dssp TEEEEEEEEEEC--CSCCC-CCTTEEEEEEECTTTCCGGGBSCH----HHHHHHHHHHHHHHHS
T ss_pred cEEEEEEEEEeC--CCccC-CCccceeEEEECHHHcCcccccCh----HHHHHHHHHHHhccCC
Confidence 334455666543 23333 36789999999999998 44332 3456677776655544
No 45
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.76 E-value=2.4e-18 Score=156.86 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=104.4
Q ss_pred cceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeC--CCeE
Q 017817 134 HWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIND--NNEV 207 (365)
Q Consensus 134 ~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~--~g~V 207 (365)
.|+....+.+ |+++......+++.. ...|..+... ..+......++|.+++.+. +++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---~~~~~~v~~~-------------~~~~~~~~av~v~~v~~~~~~~~~v 79 (212)
T 2dsc_A 16 KQYIISEELISEGKWVKLEKTTYMDPTGK---TRTWESVKRT-------------TRKEQTADGVAVIPVLQRTLHYECI 79 (212)
T ss_dssp CCEEEEEEEEEECSSEEEEEEEEECTTSC---EEEEEEEEET-------------TCCTTSCSEEEEEEEEECTTSCCEE
T ss_pred CceEeeEEEEeeCCEEEEEEEEEECCCCC---EEEEEEEEee-------------ccCCCCCCEEEEEEEEeCCCCCcEE
Confidence 7999888777 999999998888732 1111111000 0000011223333334443 2589
Q ss_pred EEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCc---
Q 017817 208 LVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLST--- 284 (365)
Q Consensus 208 LLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~--- 284 (365)
||+++. +++..++.|++|||++|+||++++||+||++||||+++....+++.....+........+|++.......
T Consensus 80 lLv~q~-R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 158 (212)
T 2dsc_A 80 VLVKQF-RPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENA 158 (212)
T ss_dssp EEEEEE-EGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGGGS
T ss_pred EEEEee-cCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCcccccc
Confidence 999873 4334567899999999999999999999999999999988777655444444334444555555433211
Q ss_pred --cccCCccceeeEEEEcccccccCCC
Q 017817 285 --EIKVDDLEIKGAKWMPFMEFVKQPL 309 (365)
Q Consensus 285 --~i~~~~~Ei~~~~Wv~leEl~~~~~ 309 (365)
...++++|+.++.|++++++.++..
T Consensus 159 ~~~~~~~~~E~~~~~w~~~~el~~~~~ 185 (212)
T 2dsc_A 159 RPKPKPGDGEFVEVISLPKNDLLQRLD 185 (212)
T ss_dssp SCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred CCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence 3345678999999999999987543
No 46
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.76 E-value=1.9e-18 Score=149.05 Aligned_cols=128 Identities=20% Similarity=0.318 Sum_probs=88.6
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-Eeeccc-----
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-RHAHNV----- 266 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-~~~~~~----- 266 (365)
+.+|++++++.+++|||++|.. .+|.|.+|||++|+||++++||+||++||||+++........ ...+..
T Consensus 14 ~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 89 (165)
T 1f3y_A 14 RRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVR 89 (165)
T ss_dssp CCEEEEEEECTTSCEEEEEETT----EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHH
T ss_pred eeeEEEEEECCCCcEEEEecCC----CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCcccc
Confidence 4568888999899999999852 358999999999999999999999999999998753221110 001100
Q ss_pred ----------cCccEEEEEEEEEecCCccccC-----CccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHh
Q 017817 267 ----------AFQKSDLFFICMLKPLSTEIKV-----DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR 328 (365)
Q Consensus 267 ----------~~~~~~~~f~~~l~~~~~~i~~-----~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr 328 (365)
..+....+|++.......++.+ +++|+.+++|++++++.++..... ..+++.+++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~----~~~~~~~~~~l~ 162 (165)
T 1f3y_A 90 EKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFK----KPVYKEVLSVFA 162 (165)
T ss_dssp HHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGG----HHHHHHHHHHHG
T ss_pred ccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhh----HHHHHHHHHHhh
Confidence 0122456777776543333433 367899999999999999765543 345555555544
No 47
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.76 E-value=9e-18 Score=150.96 Aligned_cols=135 Identities=19% Similarity=0.318 Sum_probs=87.5
Q ss_pred cceeEEEEEEEeCCC-eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCc-ceeeE----EEEEEeec
Q 017817 191 THQVGVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD-TEFVE----VIAFRHAH 264 (365)
Q Consensus 191 ~h~v~V~~vVin~~g-~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~-~~~~~----ll~~~~~~ 264 (365)
...+++++++++.++ +|||++++ ..|.|.+|||++|+||++.+||+||++||||++ +.... .+......
T Consensus 43 ~~h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 117 (197)
T 3fcm_A 43 IAHLTSSAFAVNKERNKFLMIHHN-----IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVN 117 (197)
T ss_dssp SEEEEEEEEEECTTSCEEEEEEET-----TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEEC
T ss_pred CccEEEEEEEEECCCCEEEEEEec-----CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeec
Confidence 344567788888765 99999985 467999999999999999999999999999998 44211 11111111
Q ss_pred c-cc-----Cc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCCC
Q 017817 265 N-VA-----FQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGL 334 (365)
Q Consensus 265 ~-~~-----~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g~ 334 (365)
. .. .. ...++|++... ....+.++++|+.+++|++++++.++...+. ++.++..+++++++.+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~~l~~~~~~~ 191 (197)
T 3fcm_A 118 GHIKRGKYVSSHLHLNLTYLIECS-EDETLMLKEDENSGVMWIPFNEISKYCSEPH---MIPIYEKLINKLKTQSKEG 191 (197)
T ss_dssp CEEETTEEECCEEEEEEEEEEECC-TTSCCCCCC----CEEEEEGGGHHHHCCCGG---GHHHHHHHHHHHHC-----
T ss_pred CccccCcccCCceeEEEEEEEEeC-CCcccCCCcccccceEEccHHHHHhhcCCHH---HHHHHHHHHHHHHhccccc
Confidence 0 00 01 12244555433 2234556678999999999999998866553 3568888988888775543
No 48
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.76 E-value=5.2e-18 Score=148.25 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=84.0
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccccCc
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQ 269 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~~~~~~~ 269 (365)
..++++++++.++++||++|...+..++|.|+ +|||++++||++.+||+||++||||+++... ..++.+..+.....
T Consensus 34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~ 113 (171)
T 1q27_A 34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS 113 (171)
T ss_dssp CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence 45677888888999999998655555689999 9999999999999999999999999998773 44444431222222
Q ss_pred cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817 270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
....+|.+.. ..++.++++|+.+++|++++++.++
T Consensus 114 ~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~ 148 (171)
T 1q27_A 114 SFMCVYELRS---DATPIFNPNDISGGEWLTPEHLLAR 148 (171)
T ss_dssp SEEEEEEEEC---CCCCCSCTTTCSCCEEECHHHHHHH
T ss_pred cEEEEEEEEE---CCccccCchhhheEEEecHHHHHHH
Confidence 3344444443 3455566788999999999999854
No 49
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.76 E-value=4.3e-18 Score=144.28 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=86.3
Q ss_pred eEEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeec------
Q 017817 194 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAH------ 264 (365)
Q Consensus 194 v~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~~------ 264 (365)
++|++++++.+ +++||++|... +|.|.+|||++|+||++.+||+||++||||+++... .+++.....
T Consensus 10 ~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 85 (150)
T 2o1c_A 10 VSILVVIYAQDTKRVLMLQRRDD----PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFS 85 (150)
T ss_dssp EEEEEEEEETTTCEEEEEECSSS----TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCG
T ss_pred eEEEEEEEeCCCCEEEEEEecCC----CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeec
Confidence 67888999875 99999998532 689999999999999999999999999999998653 344432211
Q ss_pred ------c-ccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 265 ------N-VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 265 ------~-~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
+ ........+|.+... .... ...+|+.+++|++++++.++.+.+. .+.+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~f~~~~~--~~~~-~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~ 147 (150)
T 2o1c_A 86 HLRHRYAPGVTRNTESWFCLALP--HERQ-IVFTEHLAYKWLDAPAAAALTKSWS---NRQAIEQFVI 147 (150)
T ss_dssp GGGGGBCTTCCEEEEEEEEEEES--SCCC-CCCSSSSCEEEEEHHHHHHHCSCHH---HHHHHHHHTT
T ss_pred ccccccCCCCcceEEEEEEEEcC--CCCC-cChhHhhccEeecHHHHHhhhcCHH---HHHHHHHHHH
Confidence 0 111233445555543 2222 2347889999999999999876653 3566666553
No 50
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.75 E-value=1.7e-18 Score=155.44 Aligned_cols=151 Identities=16% Similarity=0.084 Sum_probs=101.7
Q ss_pred hcceecCeEEE---EEEeecccccc--chHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeC-CCe
Q 017817 133 IHWRRMNKKGI---WLKLPLENAEL--VPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIND-NNE 206 (365)
Q Consensus 133 ~~W~~~~~r~v---Wl~l~~~~~~l--~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~-~g~ 206 (365)
..|+..+++.+ |+++......+ ++.. .. ....+.+ .+..+|++++++. +++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~---~~---~~~r~~~-----------------~~~~av~v~~~~~~~~~ 59 (191)
T 3o6z_A 3 QQITLIKDKILSDNYFTLHNITYDLTRKDGE---VI---RHKREVY-----------------DRGNGATILLYNTKKKT 59 (191)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEEEECTTSC---EE---EEEEEEE-----------------ECCCEEEEEEEETTTTE
T ss_pred CceEEeEeEEEecCcEEEEEEEEEEECCCCC---EE---EEEEEEE-----------------ecCCEEEEEEEECCCCE
Confidence 46777777777 88888776644 4421 00 0000110 0124577888885 689
Q ss_pred EEEEeeecCCCC------CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEe
Q 017817 207 VLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLK 280 (365)
Q Consensus 207 VLLvrr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~ 280 (365)
+||+++. +.+. .++.|++|||++| ||++++||+||++||||+++..+..++.+...++.......+|++...
T Consensus 60 vlLv~~~-r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 137 (191)
T 3o6z_A 60 VVLIRQF-RVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYS 137 (191)
T ss_dssp EEEEEEE-CHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTTTBCCEEEEEEEECC
T ss_pred EEEEEcC-CccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCCccCcEEEEEEEEEc
Confidence 9999884 3222 5789999999999 999999999999999999998888888766666555555566666643
Q ss_pred cCCc---cccCCccceeeEEEEcccccccCCC
Q 017817 281 PLST---EIKVDDLEIKGAKWMPFMEFVKQPL 309 (365)
Q Consensus 281 ~~~~---~i~~~~~Ei~~~~Wv~leEl~~~~~ 309 (365)
.... .... ++|+.++.|++++|+.++..
T Consensus 138 ~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~ 168 (191)
T 3o6z_A 138 DNQRANAGGGV-EDEAIEVLELPFSQALEMIK 168 (191)
T ss_dssp TTCC---------CCSSEEEEEEHHHHHHHHH
T ss_pred ccccccCCCCC-CCcEEEEEEEEHHHHHHHHH
Confidence 2110 1122 67899999999999988643
No 51
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.75 E-value=2.2e-18 Score=155.54 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=82.2
Q ss_pred eeEEEEEEE--eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCcc
Q 017817 193 QVGVGGFVI--NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK 270 (365)
Q Consensus 193 ~v~V~~vVi--n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~ 270 (365)
...++++++ +++++|||++|.. .++.|.+|||++|+||++++||+||++||||+++....+++.+.... ...
T Consensus 40 ~~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~ 113 (194)
T 2fvv_A 40 KKRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKH 113 (194)
T ss_dssp EEEEEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTE
T ss_pred cccEEEEEEEECCCCEEEEEEEeC----CCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC--Cce
Confidence 345666666 3468999999852 25799999999999999999999999999999998888888766432 223
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc--cCCCCCCCCccCcchhhH
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQLVSAFDGQTS 348 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~--y~g~~~~~l~~~f~~~~~ 348 (365)
...+|++..............+..+++|++++++.++.... +.++..++..++.+ |. .....++..|+...|
T Consensus 114 ~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~-----~~~~~~~l~~l~~~~~~~-~~~~~~~~~f~~~~~ 187 (194)
T 2fvv_A 114 RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH-----KPVQASYFETLRQGYSAN-NGTPVVATTYSVSAQ 187 (194)
T ss_dssp EEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT-----CHHHHHHTCC------------------------
T ss_pred EEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhcC-----cHHHHHHHHHHhhccccc-CchhccCcceEEeec
Confidence 34455554432111111112245789999999998754322 12333444333333 33 355678888985444
Q ss_pred H
Q 017817 349 S 349 (365)
Q Consensus 349 ~ 349 (365)
.
T Consensus 188 ~ 188 (194)
T 2fvv_A 188 S 188 (194)
T ss_dssp -
T ss_pred c
Confidence 3
No 52
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.75 E-value=9.8e-18 Score=142.18 Aligned_cols=122 Identities=19% Similarity=0.183 Sum_probs=86.7
Q ss_pred cceeEEEEEEEeC-CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec---cc
Q 017817 191 THQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH---NV 266 (365)
Q Consensus 191 ~h~v~V~~vVin~-~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~---~~ 266 (365)
..+.+++++++++ +++|||+++. .|.|.+|||++++||++.+||+||++||||+++....+++..... ..
T Consensus 16 ~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 89 (148)
T 2azw_A 16 QTRYAAYIIVSKPENNTMVLVQAP------NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNH 89 (148)
T ss_dssp EECCEEEEECEEGGGTEEEEEECT------TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETT
T ss_pred eeeeEEEEEEECCCCCeEEEEEcC------CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCC
Confidence 3456787888876 7899999973 379999999999999999999999999999999888877654311 11
Q ss_pred c---CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817 267 A---FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 324 (365)
Q Consensus 267 ~---~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l 324 (365)
. ......+|.+.... ... ...+|+.+++|++++++.++.... ..+.+++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~--~~~-~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~ 144 (148)
T 2azw_A 90 RQTAYYNPGYFYVANTWR--QLS-EPLERTNTLHWVAPEEAVRLLKRG---SHRWAVEKWL 144 (148)
T ss_dssp TTEEEEEEEEEEEEEEEE--ECS-SCC-CCSEEEEECHHHHHHHBSCH---HHHHHHHHHH
T ss_pred CCcceEEEEEEEEEEcCc--CCc-CCCCceeeEEEeeHHHHHhhhcch---hHHHHHHHHH
Confidence 1 11223445554432 222 234678899999999999876554 3366666655
No 53
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.75 E-value=4.6e-18 Score=146.93 Aligned_cols=118 Identities=21% Similarity=0.373 Sum_probs=83.4
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----------
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA---------- 263 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~---------- 263 (365)
++|+++|++ +++|||++++ ..|.|.+|||++|+||++.+||+||++||||+++.....++....
T Consensus 2 ~~~~~vi~~-~~~vLL~~r~-----~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 75 (156)
T 1k2e_A 2 IVTSGVLVE-NGKVLLVKHK-----RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPL 75 (156)
T ss_dssp EEEEEECEE-TTEEEEEECT-----TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCS
T ss_pred eEEEEEEEE-CCEEEEEEEc-----CCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccc
Confidence 457778887 8899999985 368999999999999999999999999999999876554321100
Q ss_pred ------ccccCc---cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817 264 ------HNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 329 (365)
Q Consensus 264 ------~~~~~~---~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~ 329 (365)
...... ....+|.+.. ...|..+++|++++|+.++++.+. .+.+++.+++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~f~~~~---------~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~ 138 (156)
T 1k2e_A 76 VILEEVVKYPEETHIHFDLIYLVKR---------VGGDLKNGEWIDVREIDRIETFPN---VRKVVSLALSTLYR 138 (156)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEEEE---------EEECCCSCEEEEGGGGGGSCBSTT---HHHHHHHHHHHHHH
T ss_pred eeeeeeecCCCCceEEEEEEEEEEe---------cCCcEeeeEEeCHHHHhcCCCChH---HHHHHHHHHHHHHh
Confidence 000101 1223344432 234678999999999999887664 36777777666543
No 54
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.74 E-value=1.4e-17 Score=142.93 Aligned_cols=123 Identities=11% Similarity=0.164 Sum_probs=84.7
Q ss_pred cceeEEEEEEEeCCCe----EEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc
Q 017817 191 THQVGVGGFVINDNNE----VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 266 (365)
Q Consensus 191 ~h~v~V~~vVin~~g~----VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~ 266 (365)
.+.++|++++.+ +++ +|+++|...+ ++| |.+|||++++||++.+||+||++||||+++....+++.......
T Consensus 6 ~~~~~~~~ii~~-~~~~~~~vLl~~r~~~~--~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~ 81 (155)
T 2b06_A 6 LTILTNICLIED-LETQRVVMQYRAPENNR--WSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLD 81 (155)
T ss_dssp CEEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECT
T ss_pred CcEEEEEEEEEE-CCCCeEEEEEEECCCCC--CCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccC
Confidence 345667777777 445 8888775332 556 99999999999999999999999999999988888876554432
Q ss_pred c-CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817 267 A-FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 324 (365)
Q Consensus 267 ~-~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l 324 (365)
. ......+|.+... ... +...|..+++|++++++.++++... .+.+++.+.
T Consensus 82 ~~~~~~~~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~ 133 (155)
T 2b06_A 82 TGGRYIVICYKATEF--SGT--LQSSEEGEVSWVQKDQIPNLNLAYD---MLPLMEMME 133 (155)
T ss_dssp TSCEEEEEEEEECEE--EEC--CCCBTTBEEEEEEGGGGGGSCBCTT---HHHHHHHHH
T ss_pred CCceEEEEEEEEEec--CCC--CCCCcceeeEEeeHHHhhhCCCChh---HHHHHHHHh
Confidence 1 1222334444322 222 2346788999999999999988764 356666554
No 55
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.74 E-value=1.6e-18 Score=143.49 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=85.0
Q ss_pred EEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEE
Q 017817 198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC 277 (365)
Q Consensus 198 ~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~ 277 (365)
+++++.+++|||++|... ..++|.|.+|||++++||++.+||+||++||||+.+.....++..............+|.+
T Consensus 9 ~ii~~~~~~vLl~~r~~~-~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (129)
T 1mut_A 9 GIIRNENNEIFITRRAAD-AHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLV 87 (129)
T ss_dssp EECEETTTEEEEEECSSC-CSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEE
T ss_pred EEEEecCCEEEEEEeCCC-CCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEE
Confidence 456688899999998643 3578999999999999999999999999999999987766655443222222222234555
Q ss_pred EEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHH
Q 017817 278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI 322 (365)
Q Consensus 278 ~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~ 322 (365)
... ... +..+|+.+++|++++++.+++++... +++++.
T Consensus 88 ~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~ 125 (129)
T 1mut_A 88 ERW--EGE--PWGKEGQPGEWMSLVGLNADDFPPAN---EPVIAK 125 (129)
T ss_dssp EEC--SSC--CCCCSSCCCEEEESSSCCTTTSCTTC---HHHHHH
T ss_pred Ecc--CCc--cCCcccceeEEeCHHHcccccCCchh---HHHHHH
Confidence 442 222 34567889999999999999887754 454543
No 56
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.5e-18 Score=146.14 Aligned_cols=127 Identities=23% Similarity=0.238 Sum_probs=81.6
Q ss_pred EEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817 195 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 273 (365)
Q Consensus 195 ~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~ 273 (365)
.+++++++++ ++|||+++. ..|.|.+|||++++||++.+||+||++||||+++.....+..+.... ..+....
T Consensus 6 ~~~~~i~~~~~~~vLl~~r~-----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-~~~~~~~ 79 (146)
T 2jvb_A 6 VRGAAIFNENLSKILLVQGT-----ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERN-IQGKNYK 79 (146)
T ss_dssp CEEEEEBCTTSSEEEEECCS-----SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEE-ETTEEEE
T ss_pred EEEEEEEeCCCCEEEEEEEc-----CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccc-cCCceEE
Confidence 3667777775 899999975 36899999999999999999999999999999886432211111111 1122223
Q ss_pred EEEEEEecCCccccC-CccceeeEEEEcccccccCCCCcCCc--hHHHHHHHHHHHH
Q 017817 274 FFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDC--MFKKVIDICIARL 327 (365)
Q Consensus 274 ~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~~~~--~~~~il~~~l~~l 327 (365)
+|++..........+ +++|+.+++|++++++.++....... ++..++..+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~l~~~~ 136 (146)
T 2jvb_A 80 IFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWL 136 (146)
T ss_dssp EEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccchhhhhHHHHHHHHHHHH
Confidence 333322222122222 36789999999999999876555433 3333444444443
No 57
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.74 E-value=2.2e-17 Score=141.71 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=80.8
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc----
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ---- 269 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~---- 269 (365)
+++++++++ +++|||++| .+.|.+|||++++||++.+||+||++||||+++....+++.........+
T Consensus 20 ~~~~~ii~~-~~~vLl~~r-------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 91 (154)
T 2pqv_A 20 VRATALIVQ-NHKLLVTKD-------KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYH 91 (154)
T ss_dssp EEEEECCEE-TTEEEEEEE-------TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEE-CCEEEEEec-------CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcce
Confidence 556677775 689999988 47899999999999999999999999999999988777765433222222
Q ss_pred cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817 270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312 (365)
Q Consensus 270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~ 312 (365)
...++|.+...........+++|+.+++|++++++.++++.+.
T Consensus 92 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 134 (154)
T 2pqv_A 92 NIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPV 134 (154)
T ss_dssp EEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEEST
T ss_pred EEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcH
Confidence 1233555554322111112356789999999999999887764
No 58
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.73 E-value=1.7e-17 Score=148.64 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=85.6
Q ss_pred EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCcc---E
Q 017817 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK---S 271 (365)
Q Consensus 195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~---~ 271 (365)
.+++++.+ +++|||++|+ ..|.|.+|||++|+||++.+||+||++||||+++....+++.+......... .
T Consensus 6 v~~~vi~~-~~~vLL~~r~-----~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T 3fk9_A 6 VTNCIVVD-HDQVLLLQKP-----RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSE 79 (188)
T ss_dssp EEEEEEEE-TTEEEEEECT-----TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEE-CCEEEEEEeC-----CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEE
Confidence 34455554 6899999984 4789999999999999999999999999999999888877765443322221 1
Q ss_pred EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 326 (365)
Q Consensus 272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~ 326 (365)
...+++......+.+.. ..|..+++|++++++.++++.+.+ +.++..+++.
T Consensus 80 ~~~~~f~a~~~~~~~~~-~~e~~~~~W~~~~el~~~~l~~~~---~~~l~~~l~~ 130 (188)
T 3fk9_A 80 WMLFTFKATEHEGEMLK-QSPEGKLEWKKKDEVLELPMAAGD---KWIFKHVLHS 130 (188)
T ss_dssp EEEEEEEESCEESCCCS-EETTEEEEEEEGGGGGGSCCCHHH---HHHHHHHTTC
T ss_pred EEEEEEEEECCCCCCcC-CCCCEeEEEEEHHHhhhCCCCHHH---HHHHHHHHcC
Confidence 13333333322233322 344578999999999998887643 5666666544
No 59
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.73 E-value=3.8e-17 Score=143.36 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=82.1
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 272 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~ 272 (365)
.+.+++++++.++++||++++ .|.|.+|||++|+||++.+||+||++||||+++.....++.+.... ...
T Consensus 15 ~~~~~~~ii~~~~~vLL~~r~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~ 84 (163)
T 3f13_A 15 LARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF----NAH 84 (163)
T ss_dssp CEEEEEEECEETTEEEEEECC---------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEE
T ss_pred ceEEEEEEEEeCCEEEEEEEC------CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEE
Confidence 345556666677899999884 5799999999999999999999999999999998888776543221 344
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL 327 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l 327 (365)
.+|+|.. ++++.+. +|+.+++|++ .+....++.+. .+.+++.+.+..
T Consensus 85 ~~f~~~~---~~~~~~~-~E~~~~~W~~-~~~~~~~l~~~---~~~il~~~~~~~ 131 (163)
T 3f13_A 85 KVYLCIA---QGQPKPQ-NEIERIALVS-SPDTDMDLFVE---GRAILRRYARLR 131 (163)
T ss_dssp EEEEEEC----CCCCCC-TTCCEEEEES-STTCSSCBCHH---HHHHHHHHHHHT
T ss_pred EEEEEEE---CCcCccC-CCceEEEEEC-cccccCCCCHH---HHHHHHHHHHhh
Confidence 5566643 3445443 4899999999 44455555553 366677666543
No 60
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.73 E-value=2.5e-18 Score=163.12 Aligned_cols=195 Identities=19% Similarity=0.205 Sum_probs=113.7
Q ss_pred cccccccccCCCcEEEcCCCCCCChHHHHHHHHhhh--hcceecCe-EEEEEEeeccccccchHHHhcce---eeecCCc
Q 017817 97 LRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSL--IHWRRMNK-KGIWLKLPLENAELVPIAVKEGF---KYHHAEP 170 (365)
Q Consensus 97 ~~~~~~~~D~~~gv~v~~~~~~~~~~~f~~~l~~sl--~~W~~~~~-r~vWl~l~~~~~~l~~~a~~~gF---~~hh~~~ 170 (365)
..+...-.|-+.+++|+..+.. -.....|-..| .+|--.+. +. ....+|. +...+| .|||+.
T Consensus 11 ~~~~~~l~dl~~rfi~n~p~~~---~~~~~~~~f~ie~a~wfy~d~~~~-------~~~~~p~-~~~~~f~~~~f~~~~- 78 (271)
T 2a6t_A 11 ATFSQVLDDLSARFILNLPAEE---QSSVERLCFQIEQAHWFYEDFIRA-------QNDQLPS-LGLRVFSAKLFAHCP- 78 (271)
T ss_dssp CCTHHHHHHHHHHHTTTSCGGG---TTCHHHHHHHHHHHHHHHHHTHHH-------HCSSSCC-CCHHHHHHHHHTTCH-
T ss_pred CCHHHHHHHHHHHHhhcCCHHH---hccHHHHHHHHHHHHHHHHHhhhh-------cccCCCc-ccHHHHHHHHhhhhh-
Confidence 3455566677888888764322 11223344444 56665543 11 1111222 335566 789984
Q ss_pred ceeeccccccCCCCCCCC---CCcceeEEEEEEEeC-CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHH
Q 017817 171 EYLMLTYWIPDGPCVLPG---NATHQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKE 246 (365)
Q Consensus 171 ~y~~l~~wl~~~~~~lP~---~~~h~v~V~~vVin~-~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~E 246 (365)
++..|.+.....++. +..+..+++++++++ +++|||++|.. .++.|.+|||++|+||++++||+||++|
T Consensus 79 ---~l~~~~~~~~~~~~~~~~~~~~v~~v~avv~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEs~~eAA~REl~E 151 (271)
T 2a6t_A 79 ---LLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWK----ASSGWGFPKGKIDKDESDVDCAIREVYE 151 (271)
T ss_dssp ---HHHHC---CCHHHHHHHHHSCCCCEEEEEEBCSSSSEEEEEEESS----TTCCCBCSEEECCTTCCHHHHHHHHHHH
T ss_pred ---hhhcccccchhHHHHHHhcCCCCCeEEEEEEECCCCEEEEEEEeC----CCCeEECCcccCCCCcCHHHHHHHHHHH
Confidence 566787754433332 222344577888886 48999999842 3588999999999999999999999999
Q ss_pred HhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccccC-CccceeeEEEEcccccccCCCCc
Q 017817 247 ETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQ 311 (365)
Q Consensus 247 ETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~ 311 (365)
|||+++..+..+..+. .+...+....+|++..........+ +++|+.+++|++++++.++....
T Consensus 152 EtGl~~~~l~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 216 (271)
T 2a6t_A 152 ETGFDCSSRINPNEFI-DMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK 216 (271)
T ss_dssp HHCCCCTTTCCTTCEE-EEEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC---
T ss_pred HhCCCceeeeeeeeec-cCCcCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcC
Confidence 9999987632221111 1111122344555554332332333 56899999999999999875543
No 61
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.72 E-value=1.4e-17 Score=148.67 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=92.1
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeec---cccC
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFV-EVIAFRHAH---NVAF 268 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~~-~ll~~~~~~---~~~~ 268 (365)
.+|++++++.++++||++|......++|.|.+ |||++++||++++||+||++||||+++... .+++.+... +...
T Consensus 33 ~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 112 (190)
T 1hzt_A 33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI 112 (190)
T ss_dssp ECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred EEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence 35778888888999999986555456899999 999999999999999999999999999877 655432211 1111
Q ss_pred --ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC---CchHHHHHHHHHHHHh
Q 017817 269 --QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG---DCMFKKVIDICIARLR 328 (365)
Q Consensus 269 --~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~---~~~~~~il~~~l~~lr 328 (365)
.....+|++.. ..++.++++|+.+++|++++++.++....+ ...++.+++.++++.+
T Consensus 113 ~~~~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~~ 174 (190)
T 1hzt_A 113 VENEVCPVFAART---TSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKR 174 (190)
T ss_dssp EEEEECCEEEEEB---CSCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHHH
T ss_pred cceEEEEEEEEec---CCCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHHh
Confidence 11223444443 234556678999999999999987632211 1144566666655543
No 62
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=153.06 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=82.0
Q ss_pred ceeEEEEEEEe-CCCeEEEEeeecCCCCC-------------------------------CCceEeceeeecC-CCCHHH
Q 017817 192 HQVGVGGFVIN-DNNEVLVVQEKYCNPAF-------------------------------AGLWKLPTGFIDE-SEEIFK 238 (365)
Q Consensus 192 h~v~V~~vVin-~~g~VLLvrr~~~~~~~-------------------------------~g~W~lPGG~ve~-GEs~~e 238 (365)
+..+|++++++ .++++||+++. +++.. ++.|++|||++|+ ||++++
T Consensus 35 ~~~aV~vl~~~~~~~~vlLvrQ~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~e 113 (218)
T 3q91_A 35 THDSVTVLLFNSSRRSLVLVKQF-RPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEE 113 (218)
T ss_dssp CCCEEEEEEEEGGGTEEEEEEEE-CHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHH
T ss_pred cCCeEEEEEEECCCCEEEEEEcc-ccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHH
Confidence 34578888898 46899999873 43322 6899999999999 999999
Q ss_pred HHHHHHHHHhCCcc--eeeEEEEEEeeccccCccEEEEEEEEEecC----CccccCCccceeeEEEEcccccccCC
Q 017817 239 GAVREVKEETGVDT--EFVEVIAFRHAHNVAFQKSDLFFICMLKPL----STEIKVDDLEIKGAKWMPFMEFVKQP 308 (365)
Q Consensus 239 AAiREv~EETGl~~--~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~----~~~i~~~~~Ei~~~~Wv~leEl~~~~ 308 (365)
||+||++||||+.+ ..+..++.+...++.......+|++..... .....++++|+.++.|++++|+.++.
T Consensus 114 aA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i 189 (218)
T 3q91_A 114 VACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFA 189 (218)
T ss_dssp HHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHH
T ss_pred HHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHH
Confidence 99999999999998 677777766555555555556666665321 12345567899999999999998754
No 63
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.68 E-value=1.6e-16 Score=136.76 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=87.6
Q ss_pred ceeEEEEEEEeC---CCeEEEEeeecCCCCCCCceEeceeeecCCCCHH-HHHHHHHHHHhC-CcceeeEEEEEEeeccc
Q 017817 192 HQVGVGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF-KGAVREVKEETG-VDTEFVEVIAFRHAHNV 266 (365)
Q Consensus 192 h~v~V~~vVin~---~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~-eAAiREv~EETG-l~~~~~~ll~~~~~~~~ 266 (365)
++..+.++|.++ +++|||++|.. ...+.|.|+||||.+++||++. +||+||++|||| +.+.....++...+...
T Consensus 18 ~~~~~~~vi~~~~~~~~~vLl~~R~~-~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~ 96 (155)
T 1x51_A 18 EESSATCVLEQPGALGAQILLVQRPN-SGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS 96 (155)
T ss_dssp EEEEEEEEEEEECSSSEEEEEEECCC-CSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS
T ss_pred eEEEEEEEEEecCCCCCEEEEEECCC-CCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecC
Confidence 444555666664 58999999853 3457899999999999999996 999999999999 88876666654333333
Q ss_pred cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817 267 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 267 ~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~ 325 (365)
.+.....+|.+... .+.+ ...|..+++|++++++.+++++. ..+++++.+..
T Consensus 97 ~~~~~~~~~~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~ 148 (155)
T 1x51_A 97 HIKLTYQVYGLALE--GQTP--VTTVPPGARWLTQEEFHTAAVST---AMKKVFRVYQG 148 (155)
T ss_dssp SCEEEEEEEEEECS--SCCC--CCCCCTTEEEEEHHHHHHSCCCH---HHHHHHHHHHH
T ss_pred CccEEEEEEEEEEc--CCCC--CCCCCCccEEccHHHhhhcCCCH---HHHHHHHHHHh
Confidence 33323344544432 2222 34567789999999999988765 34666666553
No 64
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.68 E-value=2.3e-16 Score=152.50 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=84.3
Q ss_pred CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE------EEEe
Q 017817 189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI------AFRH 262 (365)
Q Consensus 189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll------~~~~ 262 (365)
++...++|+++++ .+++|||++|... +..|.|.+|||++|+||++++||+||++||||+++....++ ..+.
T Consensus 199 ~~~~~~~v~~vi~-~~~~vLL~~r~~~--~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 275 (341)
T 2qjo_A 199 YAPTFITTDAVVV-QAGHVLMVRRQAK--PGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFD 275 (341)
T ss_dssp SCCCEEEEEEEEE-ETTEEEEEECCSS--SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEEC
T ss_pred CCCCceEEEEEEE-eCCEEEEEEecCC--CCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEe
Confidence 4455677878777 4689999998643 25789999999999999999999999999999998754322 2222
Q ss_pred eccc-cCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC--CCCcCCchHHHHHHHHHH
Q 017817 263 AHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ--PLIQGDCMFKKVIDICIA 325 (365)
Q Consensus 263 ~~~~-~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~--~~~~~~~~~~~il~~~l~ 325 (365)
.... ..+ ....+|++...........+++|+.+++|++++++.++ ++.+.+ +.+++.+++
T Consensus 276 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~---~~il~~~~~ 339 (341)
T 2qjo_A 276 APGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDH---FQIIQHFVS 339 (341)
T ss_dssp CTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTH---HHHHHHHC-
T ss_pred CCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchHH---HHHHHHHHh
Confidence 1111 111 23455666553221111135688999999999999997 555543 566666554
No 65
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.68 E-value=5.8e-16 Score=150.58 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=92.8
Q ss_pred CCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEE----EEEE-e
Q 017817 188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV----IAFR-H 262 (365)
Q Consensus 188 ~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~l----l~~~-~ 262 (365)
.++...++|+++|+ .+++|||++|...+ ..|.|.+|||++|+||++++||+||++||||+++....+ .... .
T Consensus 203 ~~~~~~~~v~~vv~-~~~~vLL~~r~~~~--~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~ 279 (352)
T 2qjt_B 203 PFKPNFVTVDALVI-VNDHILMVQRKAHP--GKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVF 279 (352)
T ss_dssp SSCCEEEEEEEEEE-ETTEEEEEEESSSS--STTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEE
T ss_pred CCCCCceEEEEEEE-ECCEEEEEEEcCCC--CCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEe
Confidence 45566677888877 57899999986432 578999999999999999999999999999999874321 1111 1
Q ss_pred eccccC--c-cEEEEEEEEEecCCcccc-CCccceeeEEEEcc-cccccC--CCCcCCchHHHHHHHHHHHHh
Q 017817 263 AHNVAF--Q-KSDLFFICMLKPLSTEIK-VDDLEIKGAKWMPF-MEFVKQ--PLIQGDCMFKKVIDICIARLR 328 (365)
Q Consensus 263 ~~~~~~--~-~~~~~f~~~l~~~~~~i~-~~~~Ei~~~~Wv~l-eEl~~~--~~~~~~~~~~~il~~~l~~lr 328 (365)
..+... + ...+.|++........+. .+++|+.+++|+++ +++.++ .+.+.+ +.+++.++++++
T Consensus 280 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~---~~il~~~~~~l~ 349 (352)
T 2qjt_B 280 DYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDH---YQIITILLEECG 349 (352)
T ss_dssp CCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTH---HHHHHHHHHHTC
T ss_pred cCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhH---HHHHHHHHHHhc
Confidence 112111 1 234455665532221122 24689999999999 999987 455443 678888887763
No 66
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.65 E-value=8.6e-17 Score=147.21 Aligned_cols=108 Identities=21% Similarity=0.292 Sum_probs=74.4
Q ss_pred EEEEEEeCCCeEEEEeeecCCC--CCCCceEe-ceeeecCCCC--H----HHHHHHHHHHHhCCcceeeEEEEEEeeccc
Q 017817 196 VGGFVINDNNEVLVVQEKYCNP--AFAGLWKL-PTGFIDESEE--I----FKGAVREVKEETGVDTEFVEVIAFRHAHNV 266 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~--~~~g~W~l-PGG~ve~GEs--~----~eAAiREv~EETGl~~~~~~ll~~~~~~~~ 266 (365)
+..+++..++++||++|...+. ...+.|.+ |||+||+||+ + ++||+||++||||+++....+++.......
T Consensus 70 i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~ 149 (211)
T 3e57_A 70 IPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTT 149 (211)
T ss_dssp EEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSS
T ss_pred EEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCC
Confidence 4445555689999999964331 13578999 9999999998 4 999999999999999988888887654322
Q ss_pred cCcc--EEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817 267 AFQK--SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 267 ~~~~--~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
..+. ...+|.|... . ..+.+.|..+++|++++++.++
T Consensus 150 ~~~~~~l~~~f~~~~~--~--g~~~~~E~~~~~W~~~~eL~~~ 188 (211)
T 3e57_A 150 EVSRVHLGALFLGRGK--F--FSVKEKDLFEWELIKLEELEKF 188 (211)
T ss_dssp HHHHTEEEEEEEEEEE--E--EEESCTTTCEEEEEEHHHHHHH
T ss_pred CCCeEEEEEEEEEEeC--C--ceeCCCCeEEEEEEEHHHHHHh
Confidence 2222 2234556543 2 3345677889999999999886
No 67
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.64 E-value=1.1e-15 Score=150.27 Aligned_cols=119 Identities=22% Similarity=0.261 Sum_probs=85.8
Q ss_pred CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-------------Cc
Q 017817 203 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-------------FQ 269 (365)
Q Consensus 203 ~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~-------------~~ 269 (365)
++.+|||+++. ..+.|.+|||++|+||++++||+||++||||+++....+++........ ..
T Consensus 36 ~~~~vLLv~r~-----~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 110 (364)
T 3fjy_A 36 DSIEVCIVHRP-----KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADT 110 (364)
T ss_dssp TTEEEEEEEET-----TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC--------------------
T ss_pred CceEEEEEEcC-----CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCc
Confidence 44589999984 3589999999999999999999999999999999888887754432221 12
Q ss_pred cEEEEEEEEEecCC----------ccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817 270 KSDLFFICMLKPLS----------TEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 329 (365)
Q Consensus 270 ~~~~~f~~~l~~~~----------~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~ 329 (365)
....+|++...... .....+++|+.+++|++++++.++.... ..+.+++.++++++.
T Consensus 111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~---~~r~il~~~~~~l~~ 177 (364)
T 3fjy_A 111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHS---TDKDTLAVFVDRVQE 177 (364)
T ss_dssp -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCH---HHHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcch---hhHHHHHHHHHHhcc
Confidence 34456665543211 1123456899999999999999876555 346788888887754
No 68
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.58 E-value=5.9e-15 Score=145.62 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=92.5
Q ss_pred eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 272 (365)
Q Consensus 193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~ 272 (365)
...+++++.|.+++|||+||.. ...++|.|+||||.+|+| ++++|++||++||||+++.....++...+....+....
T Consensus 240 ~~~~~~vi~~~~g~vLL~rR~~-~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~ 317 (369)
T 3fsp_A 240 VPLAVAVLADDEGRVLIRKRDS-TGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQL 317 (369)
T ss_dssp EEEEEEEEECSSSEEEEEECCS-SSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEE
T ss_pred EEEEEEEEEeCCCEEEEEECCC-CCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEE
Confidence 3445566777889999999964 335789999999999999 99999999999999999987776665554444444444
Q ss_pred EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL 327 (365)
Q Consensus 273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l 327 (365)
.+|.+.... + ..|..+++|++++++.+++++. ..+.+++.+.+.+
T Consensus 318 ~~~~~~~~~--~-----~~e~~~~~Wv~~~el~~~~l~~---~~~~il~~l~~~~ 362 (369)
T 3fsp_A 318 TVFPGRLVH--G-----GPVEEPYRLAPEDELKAYAFPV---SHQRVWREYKEWA 362 (369)
T ss_dssp EEEEEEECC--S-----SCCCTTEEEEEGGGGGGSCCCH---HHHHHHHHHHHHT
T ss_pred EEEEEEEcC--C-----CCCccccEEeeHHHhhhCCCCH---HHHHHHHHHHHHh
Confidence 455555421 1 3577889999999999988876 4467777766554
No 69
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.56 E-value=6.9e-14 Score=129.92 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=81.0
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCC------CC---HHHHHHHHHHHHhCCccee-----eEEE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDES------EE---IFKGAVREVKEETGVDTEF-----VEVI 258 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~G------Es---~~eAAiREv~EETGl~~~~-----~~ll 258 (365)
.++.+++++.++++||++|...+..++|.|++| ||++++| |+ +.+||+||++||||+.+.. ...+
T Consensus 60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l 139 (235)
T 2dho_A 60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL 139 (235)
T ss_dssp EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence 457788899889999999876655678999999 5999999 88 4999999999999998652 4555
Q ss_pred EEEeec-cccCc----cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817 259 AFRHAH-NVAFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 259 ~~~~~~-~~~~~----~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
+.+... +...+ ....+|++.. ..++.++++|+.+++|++++++.++
T Consensus 140 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~~el~~~ 190 (235)
T 2dho_A 140 TRIHYKAQSDGIWGEHEIDYILLVRM---NVTLNPDPNEIKSYCYVSKEELKEL 190 (235)
T ss_dssp EEEEEEEECSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHH
T ss_pred EEEEEeccCCCccceeEEEEEEEEEE---CCCCcCChHHEEEEEEEcHHHHHHH
Confidence 543321 11111 1223344442 3456677899999999999999775
No 70
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.55 E-value=6.2e-14 Score=131.15 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=80.9
Q ss_pred eEEEEEEEeCCCeEEEEeeecCCCCCCCceEece-eeecCC------CCH---HHHHHHHHHHHhCCccee-----eEEE
Q 017817 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPT-GFIDES------EEI---FKGAVREVKEETGVDTEF-----VEVI 258 (365)
Q Consensus 194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPG-G~ve~G------Es~---~eAAiREv~EETGl~~~~-----~~ll 258 (365)
.++.++++|.++++||+||...+..++|.|++|+ |++++| |++ .+||+||++||||+.+.. ...+
T Consensus 71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l 150 (246)
T 2pny_A 71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFM 150 (246)
T ss_dssp EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEE
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEE
Confidence 3577888898899999998766656789999995 999999 887 999999999999998652 3555
Q ss_pred EEEee-ccccCc----cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817 259 AFRHA-HNVAFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 259 ~~~~~-~~~~~~----~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
+.+.. .+.... ....+|++.. ..++.++++|+.+++|++++|+.++
T Consensus 151 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~eel~~~ 201 (246)
T 2pny_A 151 TIYHHKAKSDRIWGEHEICYLLLVRK---NVTLNPDPSETKSILYLSQEELWEL 201 (246)
T ss_dssp EEEEEEEESSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHH
T ss_pred EEEEEEecCCCceeeeEEEEEEEEEE---CCCCCCChHHeeEEEEEeHHHHHHH
Confidence 54322 111111 1223333432 3456677899999999999999774
No 71
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.53 E-value=6.2e-15 Score=134.53 Aligned_cols=103 Identities=25% Similarity=0.304 Sum_probs=74.3
Q ss_pred EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCC-CHHHHHHHHHHHHhCCcceeeE-----EEEEEeeccccCc
Q 017817 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGVDTEFVE-----VIAFRHAHNVAFQ 269 (365)
Q Consensus 196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGl~~~~~~-----ll~~~~~~~~~~~ 269 (365)
+.+++++.++++||++| ..|.|+||||++|+|| ++++||+||++||||+.+.... .++....... ..
T Consensus 47 vv~~i~~~~~~vLl~~r------~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~ 119 (212)
T 1u20_A 47 KLFDRVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QK 119 (212)
T ss_dssp EETTTEECCEEEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SC
T ss_pred EEEEEEecCCEEEEEEe------CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-Cc
Confidence 44556677889999887 3689999999999999 9999999999999999987543 3443332222 34
Q ss_pred cEEEEEEEEEecCCccc----------cCCccceeeEEEEcccccccC
Q 017817 270 KSDLFFICMLKPLSTEI----------KVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 270 ~~~~~f~~~l~~~~~~i----------~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
....+|.|.... +++ ..++.|..++.|+|++++.+.
T Consensus 120 ~~~~~f~~~~~~--~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~ 165 (212)
T 1u20_A 120 CVTHFYIKELKL--EEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR 165 (212)
T ss_dssp EEEEEEEEECCH--HHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred EEEEEEEEEecC--CCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence 445566665432 211 123568899999999999764
No 72
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.49 E-value=5.6e-13 Score=127.60 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=75.5
Q ss_pred eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcc------------eeeEEE---E--EE-eecccc
Q 017817 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT------------EFVEVI---A--FR-HAHNVA 267 (365)
Q Consensus 206 ~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~------------~~~~ll---~--~~-~~~~~~ 267 (365)
+|||++|. ..|.|.+|||+||+||++.+||+||++||||+.+ ....++ + .+ ......
T Consensus 140 ~vLl~~r~-----~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dp 214 (292)
T 1q33_A 140 QFVAIKRK-----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP 214 (292)
T ss_dssp EEEEEECT-----TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT
T ss_pred EEEEEEec-----CCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCC
Confidence 69999985 3589999999999999999999999999999983 111111 1 11 111111
Q ss_pred C-----ccEEEEEEEEEecC---CccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccC
Q 017817 268 F-----QKSDLFFICMLKPL---STEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYC 332 (365)
Q Consensus 268 ~-----~~~~~~f~~~l~~~---~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~ 332 (365)
. ....+.|.+..... ........+|+.+++|++++++.++...+ +.+|+.++++++..|.
T Consensus 215 r~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L~~~h-----~~il~~~~~~~~a~~~ 282 (292)
T 1q33_A 215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH-----SQFIKLVAEKRDAHWS 282 (292)
T ss_dssp TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCSTTH-----HHHHHHHHHHHTCCCC
T ss_pred CCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcccCHhH-----HHHHHHHHHHhcCccc
Confidence 1 11233444443211 11112346789999999999998764333 6788888887765543
No 73
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.42 E-value=1.2e-12 Score=125.56 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=82.1
Q ss_pred eeEEEEEEEeCCC---eEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCccee---eEEEEE---Ee
Q 017817 193 QVGVGGFVINDNN---EVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEF---VEVIAF---RH 262 (365)
Q Consensus 193 ~v~V~~vVin~~g---~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~---~~ll~~---~~ 262 (365)
..+|-+.+++.++ ++|+.||...+..++|.|+ .|+|++++||++.+||+||+.||+||.++. ...++. ..
T Consensus 118 ~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~ 197 (300)
T 3dup_A 118 AYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCM 197 (300)
T ss_dssp EEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEE
Confidence 3567788888776 9999999888888999995 899999999999999999999999998753 222222 21
Q ss_pred eccccCccEEEEEEEEEe-cCCccccCCccceeeEEEEcccccccC
Q 017817 263 AHNVAFQKSDLFFICMLK-PLSTEIKVDDLEIKGAKWMPFMEFVKQ 307 (365)
Q Consensus 263 ~~~~~~~~~~~~f~~~l~-~~~~~i~~~~~Ei~~~~Wv~leEl~~~ 307 (365)
...... ...+.|++.+. +....+.++++|+.+++|++++|+.++
T Consensus 198 ~~~~G~-~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~ 242 (300)
T 3dup_A 198 ESPAGI-KPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA 242 (300)
T ss_dssp EETTEE-EEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHH
T ss_pred ecCCCe-EEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHH
Confidence 111111 12233444332 223344668899999999999999775
No 74
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.34 E-value=1.2e-11 Score=114.58 Aligned_cols=112 Identities=26% Similarity=0.316 Sum_probs=74.8
Q ss_pred eeEEEEEEEeC--CC--eEEEEeeecCCCCCCCceEeceeeecCCCC--------------------HHHHHHHHHHHHh
Q 017817 193 QVGVGGFVIND--NN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEE--------------------IFKGAVREVKEET 248 (365)
Q Consensus 193 ~v~V~~vVin~--~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs--------------------~~eAAiREv~EET 248 (365)
+.++.++++++ ++ +|||++|.......+|.|.||||+||+||+ +..||+||++|||
T Consensus 8 r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~ 87 (232)
T 3qsj_A 8 RKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEI 87 (232)
T ss_dssp EEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHh
Confidence 44555666653 23 899999976655568999999999999987 5899999999999
Q ss_pred CCcceee------------------------------------------EEEEEEeeccccCc-cEEEEEEEEEecCCcc
Q 017817 249 GVDTEFV------------------------------------------EVIAFRHAHNVAFQ-KSDLFFICMLKPLSTE 285 (365)
Q Consensus 249 Gl~~~~~------------------------------------------~ll~~~~~~~~~~~-~~~~~f~~~l~~~~~~ 285 (365)
|+.+... ...+..-....... ....||++.+. ....
T Consensus 88 Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lp-q~~~ 166 (232)
T 3qsj_A 88 GWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQ-HLGE 166 (232)
T ss_dssp SCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECS-SCCC
T ss_pred CceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECC-CCCC
Confidence 9965321 11111111111112 23456665553 2121
Q ss_pred ccCCccceeeEEEEcccccc
Q 017817 286 IKVDDLEIKGAKWMPFMEFV 305 (365)
Q Consensus 286 i~~~~~Ei~~~~Wv~leEl~ 305 (365)
...+.+|+.+++|++++|+.
T Consensus 167 v~~d~~E~~~~~W~~p~eal 186 (232)
T 3qsj_A 167 PRLHGAELDAALWTPARDML 186 (232)
T ss_dssp CCCCSSSEEEEEEEEHHHHH
T ss_pred CCCCCCceEEEEEEcHHHHH
Confidence 24578999999999999995
No 75
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.32 E-value=1.4e-12 Score=119.70 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=64.1
Q ss_pred eEEEEeeecCCCCCCCceEeceeeecCCC-CHHHHHHHHHHHHhCCccee--eEEEEEEeecccc-CccEEEEEEEEEec
Q 017817 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVA-FQKSDLFFICMLKP 281 (365)
Q Consensus 206 ~VLLvrr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~~-~~~~~~~f~~~l~~ 281 (365)
++||+.+. ++.|++|||++|+|| ++++||+||++||||+++.. +..+......+.. .....++|++.+..
T Consensus 66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~ 139 (217)
T 2xsq_A 66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL 139 (217)
T ss_dssp EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence 56666552 679999999999999 99999999999999999873 2222222222222 23455667776532
Q ss_pred CCc--------cccCCccceeeEEEEcccccc
Q 017817 282 LST--------EIKVDDLEIKGAKWMPFMEFV 305 (365)
Q Consensus 282 ~~~--------~i~~~~~Ei~~~~Wv~leEl~ 305 (365)
... ....+..|..++.|+|++++.
T Consensus 140 ~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 140 EELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred ccceecccccccccccCCceeeEEEEEHHHhh
Confidence 111 012235688999999999987
No 76
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=99.24 E-value=2.8e-11 Score=117.28 Aligned_cols=119 Identities=8% Similarity=0.167 Sum_probs=85.0
Q ss_pred ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHh-CCcceeeEEEEEEeeccccCcc
Q 017817 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET-GVDTEFVEVIAFRHAHNVAFQK 270 (365)
Q Consensus 192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EET-Gl~~~~~~ll~~~~~~~~~~~~ 270 (365)
+++.|++++. .+|+|||+ . ..| |.||||.++.+++ ++|+||++||| |++++...+++.+.... .+.
T Consensus 182 p~~~vgaii~-~~g~vLL~--~-----~~G-W~LPG~~~~~~~~--~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~~~ 248 (321)
T 3rh7_A 182 GEIRLGAVLE-QQGAVFLA--G-----NET-LSLPNCTVEGGDP--ARTLAAYLEQLTGLNVTIGFLYSVYEDKS--DGR 248 (321)
T ss_dssp SCEEEEEEEE-SSSCEEEB--C-----SSE-EBCCEEEESSSCH--HHHHHHHHHHHHSSCEEEEEEEEEEECTT--TCC
T ss_pred CcceEEEEEE-ECCEEEEe--e-----CCC-ccCCcccCCCChh--HHHHHHHHHHhcCCEEeeceEEEEEEcCC--Cce
Confidence 3466766655 56899999 2 357 9999886655544 59999999997 99999999988876543 234
Q ss_pred EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCCC
Q 017817 271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGL 334 (365)
Q Consensus 271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g~ 334 (365)
..++|.|.... ++ ..+++|++++|++.+.+..+ ..+.+|+.+++..+....|+
T Consensus 249 ~~i~f~~~~~~--g~-------~~e~~~f~~~elp~~~~~~~--~~~~~L~~y~~e~~~g~f~i 301 (321)
T 3rh7_A 249 QNIVYHALASD--GA-------PRQGRFLRPAELAAAKFSSS--ATADIINRFVLESSIGNFGI 301 (321)
T ss_dssp EEEEEEEEECS--SC-------CSSSEEECHHHHTTCEESSH--HHHHHHHHHHHTTSCSSCC-
T ss_pred EEEEEEEEeCC--CC-------eeeeEEECHHHCCCcccCCH--HHHHHHHHHHHHhhcCCCCc
Confidence 56788887632 22 26789999999998866542 56778888876555544443
No 77
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.83 E-value=1.9e-09 Score=96.51 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=56.9
Q ss_pred EEEEeeecCCCCCCCceEeceeeecCCC-CHHHHHHHHHHHHhCC-cceeeEEEEEEeeccccCccEEEEEEEEEecCCc
Q 017817 207 VLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGV-DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLST 284 (365)
Q Consensus 207 VLLvrr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGl-~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~ 284 (365)
|||+.| ..|.|+||||+||+|| ++++|+.||+.||+|+ .++...++......+. ......+|.|.+.. +
T Consensus 46 iLmQ~R------~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl~~--G 116 (214)
T 3kvh_A 46 VLMQMR------FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQLTL--E 116 (214)
T ss_dssp EEEEEE------TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEECCH--H
T ss_pred EEEeee------eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEeeC--C
Confidence 555555 5799999999999999 9999999999999997 4655555543322222 34455677776532 1
Q ss_pred cc--------cC-C-ccceeeEEEEcccccc
Q 017817 285 EI--------KV-D-DLEIKGAKWMPFMEFV 305 (365)
Q Consensus 285 ~i--------~~-~-~~Ei~~~~Wv~leEl~ 305 (365)
++ .. + ..|.....-+|+=.+.
T Consensus 117 e~~~lE~~A~~A~d~G~EvlGlvRVPlytl~ 147 (214)
T 3kvh_A 117 QLHAVEISAVHSRDHGLEVLGLVRVPLYTQK 147 (214)
T ss_dssp HHHHHHHHHHTSTTBTTTEEEEEEECCCBCT
T ss_pred ccchhhhcccCCcccCceecceEEeeeEEec
Confidence 11 11 1 3466667777775554
No 78
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.78 E-value=2.6e-08 Score=89.91 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=47.5
Q ss_pred eEEEEEE-EeCCC--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhC------CcceeeEEEEEE
Q 017817 194 VGVGGFV-INDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG------VDTEFVEVIAFR 261 (365)
Q Consensus 194 v~V~~vV-in~~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG------l~~~~~~ll~~~ 261 (365)
.+|.+++ +++.+ +|||+|+. .+.|.+|||.+|+||++++|++||+.||+| .+.+..+.++..
T Consensus 59 ~sV~avil~~~~~~phVLLlq~~------~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~w 129 (208)
T 3bho_A 59 RTVEGVLIVHEHRLPHVLLLQLG------TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNW 129 (208)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEE------TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEE
T ss_pred eEEEEEEEEcCCCCcEEEEEEcC------CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEE
Confidence 4455554 44444 79999974 459999999999999999999999999999 455556677754
No 79
>3lq9_A DNA-damage-inducible transcript 4 protein; REDD1 DDIT4 MTOR, hypoxia, cancer, signaling protein; 2.00A {Homo sapiens}
Probab=24.61 E-value=39 Score=27.95 Aligned_cols=35 Identities=11% Similarity=-0.035 Sum_probs=25.4
Q ss_pred cCCcccccceeeeecc---ceeccccccee--------eEeccccc
Q 017817 11 LGSKSVSASSIFQNGG---TTSSSFRHGVS--------IRFSPQLC 45 (365)
Q Consensus 11 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~ 45 (365)
.|..-||++|++++=+ +..+||++-|. +++||+|-
T Consensus 78 ~Dp~~vpTFEL~Lvlr~d~~~W~~l~~~f~~~~~~~~tl~lSp~fr 123 (134)
T 3lq9_A 78 LDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANSPSQSLTLSTGFR 123 (134)
T ss_dssp SCTTSCCCEEEEEEEECCTTCC-CCCCSCCTTSCCCCCEECCSCEE
T ss_pred eCCCCCccEEEEEEEeeCCCCCHhHHHHHhcCCCCCceEEECCCcE
Confidence 4778899999776643 35788888774 78888884
Done!