Query 017819
Match_columns 365
No_of_seqs 293 out of 813
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06203 CCT: CCT motif; Inte 99.8 1.7E-20 3.7E-25 135.5 3.2 45 296-340 1-45 (45)
2 cd00021 BBOX B-Box-type zinc f 97.2 0.00024 5.3E-09 48.3 2.2 38 19-62 2-39 (39)
3 cd00021 BBOX B-Box-type zinc f 97.1 0.00034 7.4E-09 47.6 2.2 39 61-105 1-39 (39)
4 KOG1601 GATA-4/5/6 transcripti 96.6 0.00068 1.5E-08 61.8 0.9 93 17-110 5-103 (340)
5 smart00336 BBOX B-Box-type zin 96.6 0.0016 3.4E-08 44.9 2.4 41 59-105 2-42 (42)
6 PF00643 zf-B_box: B-box zinc 96.4 0.002 4.4E-08 44.9 1.8 40 60-105 3-42 (42)
7 smart00336 BBOX B-Box-type zin 96.0 0.0051 1.1E-07 42.3 2.4 40 17-62 3-42 (42)
8 PF09425 CCT_2: Divergent CCT 95.8 0.0052 1.1E-07 40.3 1.6 26 293-319 1-26 (27)
9 PF00643 zf-B_box: B-box zinc 95.3 0.0087 1.9E-07 41.7 1.4 40 17-62 3-42 (42)
10 KOG4367 Predicted Zn-finger pr 82.6 0.45 9.8E-06 49.7 0.4 75 17-91 162-254 (699)
11 KOG1601 GATA-4/5/6 transcripti 79.5 2.4 5.1E-05 38.6 3.9 42 292-333 289-330 (340)
12 KOG4367 Predicted Zn-finger pr 60.5 3 6.6E-05 43.8 0.2 45 61-105 163-209 (699)
13 PF07649 C1_3: C1-like domain; 48.5 6.2 0.00014 25.8 0.1 27 18-49 1-27 (30)
14 PF12773 DZR: Double zinc ribb 44.3 24 0.00052 25.2 2.7 30 34-69 9-38 (50)
15 smart00521 CBF CCAAT-Binding t 38.3 50 0.0011 25.9 3.7 25 313-337 36-61 (62)
16 KOG0129 Predicted RNA-binding 37.3 12 0.00027 39.9 0.3 43 61-106 456-505 (520)
17 PF02045 CBFB_NFYA: CCAAT-bind 36.9 29 0.00063 26.9 2.2 22 314-335 36-58 (58)
18 PF09776 Mitoc_L55: Mitochondr 35.7 18 0.00039 31.6 1.0 41 256-307 50-93 (116)
19 PF13248 zf-ribbon_3: zinc-rib 32.5 36 0.00078 21.6 1.8 26 16-47 1-26 (26)
20 PF07975 C1_4: TFIIH C1-like d 28.2 30 0.00064 26.0 1.0 31 28-67 20-50 (51)
21 PRK14873 primosome assembly pr 26.9 44 0.00095 36.9 2.4 47 29-88 383-430 (665)
22 PF03660 PHF5: PHF5-like prote 26.2 17 0.00036 31.3 -0.7 31 57-87 40-77 (106)
23 KOG2807 RNA polymerase II tran 24.6 40 0.00087 34.5 1.5 45 17-70 330-377 (378)
24 KOG1561 CCAAT-binding factor, 23.7 73 0.0016 32.2 3.1 49 295-343 191-247 (307)
25 PRK14714 DNA polymerase II lar 22.6 57 0.0012 38.7 2.3 28 312-339 1151-1178(1337)
26 KOG3576 Ovo and related transc 22.5 18 0.00039 34.9 -1.4 53 15-68 115-181 (267)
27 PRK14559 putative protein seri 22.2 74 0.0016 35.2 3.0 50 18-90 2-51 (645)
28 PF10587 EF-1_beta_acid: Eukar 21.7 64 0.0014 21.6 1.5 15 293-307 14-28 (28)
29 PF12251 zf-SNAP50_C: snRNA-ac 20.5 54 0.0012 30.7 1.4 35 15-49 137-177 (196)
No 1
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.80 E-value=1.7e-20 Score=135.52 Aligned_cols=45 Identities=62% Similarity=1.074 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhcccCCCcccchhhhhhhhhCCCCCcccccCCc
Q 017819 296 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTD 340 (365)
Q Consensus 296 R~~~v~ry~eKr~~R~f~k~irY~~Rk~~A~~RpRikGrF~k~~~ 340 (365)
|+++|+||+|||++|+|+|+|+|++||++|+.|||||||||+.++
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 789999999999999999999999999999999999999999864
No 2
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=97.18 E-value=0.00024 Score=48.34 Aligned_cols=38 Identities=37% Similarity=0.785 Sum_probs=33.4
Q ss_pred cccccCCCCceEEecCCCcccCccccCCCccchhhhcccccccc
Q 017819 19 VCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFV 62 (365)
Q Consensus 19 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~l 62 (365)
.|+.+..+++.+||..|.+.+|..|+...|. .|.++++
T Consensus 2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i 39 (39)
T cd00021 2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL 39 (39)
T ss_pred CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence 6899998899999999999999999988775 5888764
No 3
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=97.08 E-value=0.00034 Score=47.61 Aligned_cols=39 Identities=38% Similarity=0.928 Sum_probs=34.0
Q ss_pred ccccccCCccceeecccccchhcccccccccCCCCcCCCcceeec
Q 017819 61 FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI 105 (365)
Q Consensus 61 ~lCd~C~~apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv 105 (365)
++|+.++..++.+||..|...||..|+...|. .|.++||
T Consensus 1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i 39 (39)
T cd00021 1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL 39 (39)
T ss_pred CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence 36888888899999999999999999988774 5998875
No 4
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=96.62 E-value=0.00068 Score=61.79 Aligned_cols=93 Identities=31% Similarity=0.359 Sum_probs=67.7
Q ss_pred CccccccCCCCceEEecCCCcccCccccCCCccchhhhccccccccccccCCccce--eecccccchh----cccccccc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAA--FLCKADAASL----CAACDAEI 90 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~lCd~C~~apA~--v~C~aD~a~L----C~~CD~~i 90 (365)
...|+.|....... |..|.+.+|..|+.+++..+.+...|.++.+|..|....+. +.+..+...+ +..++...
T Consensus 5 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (340)
T KOG1601|consen 5 AEDLDSCRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFV 83 (340)
T ss_pred cccccccCcccccc-cccccccCCcccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccc
Confidence 34566666655555 99999999999999999998777788999999988733322 4444444444 66677777
Q ss_pred cCCCCcCCCcceeeccCCCC
Q 017819 91 HSANPLARRHQRVPILPISG 110 (365)
Q Consensus 91 HsaN~La~rH~Rvpv~~~~g 110 (365)
|..++...+|..+++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~ 103 (340)
T KOG1601|consen 84 SENNPNSLRHPPVPSMPSSN 103 (340)
T ss_pred ccccCCCCCCCCcccccccc
Confidence 87778888888877665543
No 5
>smart00336 BBOX B-Box-type zinc finger.
Probab=96.59 E-value=0.0016 Score=44.89 Aligned_cols=41 Identities=39% Similarity=0.720 Sum_probs=35.1
Q ss_pred ccccccccCCccceeecccccchhcccccccccCCCCcCCCcceeec
Q 017819 59 RVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI 105 (365)
Q Consensus 59 Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv 105 (365)
|.++|..+...++.+||..|...||..|....| +.|.++||
T Consensus 2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l 42 (42)
T smart00336 2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42 (42)
T ss_pred cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence 578899999889999999999999999998766 45877764
No 6
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=96.35 E-value=0.002 Score=44.91 Aligned_cols=40 Identities=28% Similarity=0.626 Sum_probs=34.7
Q ss_pred cccccccCCccceeecccccchhcccccccccCCCCcCCCcceeec
Q 017819 60 VFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI 105 (365)
Q Consensus 60 v~lCd~C~~apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv 105 (365)
.++|..|...++.+||..+...||..|....|.. |..+||
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i 42 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI 42 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence 4689999998899999999999999999998864 888875
No 7
>smart00336 BBOX B-Box-type zinc finger.
Probab=96.01 E-value=0.0051 Score=42.31 Aligned_cols=40 Identities=28% Similarity=0.582 Sum_probs=33.2
Q ss_pred CccccccCCCCceEEecCCCcccCccccCCCccchhhhcccccccc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFV 62 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~l 62 (365)
.+.|..+...++.+||..|.+.+|..|....| ..|.+++|
T Consensus 3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l 42 (42)
T smart00336 3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42 (42)
T ss_pred CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence 46799999888999999999999999998766 34666553
No 8
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=95.82 E-value=0.0052 Score=40.35 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcccch
Q 017819 293 PMDREARVLRYREKKKTRKFEKTIRYA 319 (365)
Q Consensus 293 ~~~R~~~v~ry~eKr~~R~f~k~irY~ 319 (365)
|..|.+.|+||.||||.|... +..|.
T Consensus 1 P~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 1 PIARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp -----HHHHHHHHHH------------
T ss_pred CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 457999999999999999987 66664
No 9
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=95.30 E-value=0.0087 Score=41.72 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=34.0
Q ss_pred CccccccCCCCceEEecCCCcccCccccCCCccchhhhcccccccc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFV 62 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~l 62 (365)
...|..|...++.+||..+...+|..|....|.. |..++|
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i 42 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI 42 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence 5679999998899999999999999999988866 776654
No 10
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=82.57 E-value=0.45 Score=49.72 Aligned_cols=75 Identities=24% Similarity=0.487 Sum_probs=60.2
Q ss_pred CccccccCCC--CceEEecCCCcccCccccCCCccchhhhccccccccc-------------cccCCcc---ceeecccc
Q 017819 17 ARVCDTCRAA--ACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVC-------------ESCEQAP---AAFLCKAD 78 (365)
Q Consensus 17 ~~~Cd~C~~~--~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~lC-------------d~C~~ap---A~v~C~aD 78 (365)
+..|.+|+.+ .|.|+|.....|.|.-|..+.|-+-.-.++|.-++.- .-|..++ -++||.++
T Consensus 162 a~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~c 241 (699)
T KOG4367|consen 162 ALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQC 241 (699)
T ss_pred hhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEec
Confidence 5679999987 4899999999999999999999877766777655432 2455554 46899999
Q ss_pred cchhccccccccc
Q 017819 79 AASLCAACDAEIH 91 (365)
Q Consensus 79 ~a~LC~~CD~~iH 91 (365)
.+..|-.|-.+..
T Consensus 242 k~pvc~~clee~k 254 (699)
T KOG4367|consen 242 KMPVCYQCLEEGK 254 (699)
T ss_pred CChHHHHHHHhhc
Confidence 9999999987653
No 11
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=79.48 E-value=2.4 Score=38.57 Aligned_cols=42 Identities=57% Similarity=0.884 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHhhhcccCCCcccchhhhhhhhhCCCCCc
Q 017819 292 TPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKG 333 (365)
Q Consensus 292 ~~~~R~~~v~ry~eKr~~R~f~k~irY~~Rk~~A~~RpRikG 333 (365)
....|++.+.||++|++.|.|.|+|+|..||..|+.|||+||
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 577999999999999999999999999999999999999999
No 12
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=60.50 E-value=3 Score=43.82 Aligned_cols=45 Identities=29% Similarity=0.657 Sum_probs=38.0
Q ss_pred ccccccCCcc--ceeecccccchhcccccccccCCCCcCCCcceeec
Q 017819 61 FVCESCEQAP--AAFLCKADAASLCAACDAEIHSANPLARRHQRVPI 105 (365)
Q Consensus 61 ~lCd~C~~ap--A~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv 105 (365)
..|..|+.+| |.|+|..+.++.|.-|....|-+-+..++|..+|-
T Consensus 163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~ 209 (699)
T KOG4367|consen 163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPP 209 (699)
T ss_pred hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCc
Confidence 4688999886 78999999999999999999987555568887764
No 13
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=48.51 E-value=6.2 Score=25.76 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=9.5
Q ss_pred ccccccCCCCceEEecCCCcccCccccCCCcc
Q 017819 18 RVCDTCRAAACTVYCKADMAYLCSACDSRVHV 49 (365)
Q Consensus 18 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~ 49 (365)
+.|+.|+...-. +..|-|..||..+|.
T Consensus 1 ~~C~~C~~~~~~-----~~~Y~C~~Cdf~lH~ 27 (30)
T PF07649_consen 1 FRCDACGKPIDG-----GWFYRCSECDFDLHE 27 (30)
T ss_dssp ---TTTS----S-------EEE-TTT-----H
T ss_pred CcCCcCCCcCCC-----CceEECccCCCccCh
Confidence 358888876422 356889999999984
No 14
>PF12773 DZR: Double zinc ribbon
Probab=44.34 E-value=24 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.512 Sum_probs=17.5
Q ss_pred CCCcccCccccCCCccchhhhccccccccccccCCc
Q 017819 34 ADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQA 69 (365)
Q Consensus 34 aD~A~LC~~CD~rvH~AN~LasrH~Rv~lCd~C~~a 69 (365)
.+.+..|..|...+- .......+|..|+..
T Consensus 9 ~~~~~fC~~CG~~l~------~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 9 PDDAKFCPHCGTPLP------PPDQSKKICPNCGAE 38 (50)
T ss_pred CccccCChhhcCChh------hccCCCCCCcCCcCC
Confidence 455677777766655 223445566666653
No 15
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=38.31 E-value=50 Score=25.89 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=21.8
Q ss_pred CCcccchhhhhhhhhCCC-CCccccc
Q 017819 313 EKTIRYASRKAYAETRPR-IKGRFAK 337 (365)
Q Consensus 313 ~k~irY~~Rk~~A~~RpR-ikGrF~k 337 (365)
.|..-++||-.-|-.||| --|||.+
T Consensus 36 rkpYlhESRH~HAm~R~Rg~gGRFl~ 61 (62)
T smart00521 36 RKPYLHESRHLHAMRRPRGSGGRFLN 61 (62)
T ss_pred cCCcccchhHHHHHccCcCCCCCCCC
Confidence 566789999999999999 6789975
No 16
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=37.26 E-value=12 Score=39.88 Aligned_cols=43 Identities=30% Similarity=0.692 Sum_probs=33.7
Q ss_pred ccccccCC-----ccceeeccc--ccchhcccccccccCCCCcCCCcceeecc
Q 017819 61 FVCESCEQ-----APAAFLCKA--DAASLCAACDAEIHSANPLARRHQRVPIL 106 (365)
Q Consensus 61 ~lCd~C~~-----apA~v~C~a--D~a~LC~~CD~~iHsaN~La~rH~Rvpv~ 106 (365)
.+|+.|+. ..|-+||++ |--+.|..|-+.+|+- ++++...||.
T Consensus 456 q~CdeC~g~~c~~q~aPfFC~n~~C~QYYCe~CWa~~HS~---~~r~~HkPlv 505 (520)
T KOG0129|consen 456 QLCDECGGRRCGGQFAPFFCRNATCFQYYCESCWAKIHSG---PGREHHKPLV 505 (520)
T ss_pred cchhhhcCeeccCccCCcccCCccHHhhhchHHHHHhhcC---CchhcCCcee
Confidence 36999988 789999995 6678999999999985 4455555643
No 17
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.90 E-value=29 Score=26.87 Aligned_cols=22 Identities=45% Similarity=0.529 Sum_probs=18.5
Q ss_pred CcccchhhhhhhhhCCC-CCccc
Q 017819 314 KTIRYASRKAYAETRPR-IKGRF 335 (365)
Q Consensus 314 k~irY~~Rk~~A~~RpR-ikGrF 335 (365)
|+.-++||-.-|-.||| --|||
T Consensus 36 k~YlheSRH~HA~~R~Rg~gGRF 58 (58)
T PF02045_consen 36 KPYLHESRHKHAMRRPRGPGGRF 58 (58)
T ss_pred HHHHHHHHHHHHHcCccCCCCCC
Confidence 44578999999999999 67787
No 18
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=35.74 E-value=18 Score=31.62 Aligned_cols=41 Identities=32% Similarity=0.511 Sum_probs=25.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC---CCCCHHHHHHHHHHHHHhh
Q 017819 256 VVPESTMSDISISHSRPPKGTIDLFSGPPIQMP---PQLTPMDREARVLRYREKK 307 (365)
Q Consensus 256 vvPd~~~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~R~~~v~ry~eKr 307 (365)
|-||+++..|....+|- -++|| ..||+++|.+++.+-+-|+
T Consensus 50 V~pDGSTI~Iry~EPR~-----------ii~mPlDl~~LSeeERk~rl~kR~pk~ 93 (116)
T PF09776_consen 50 VRPDGSTINIRYHEPRR-----------IIKMPLDLDTLSEEERKARLRKRKPKK 93 (116)
T ss_pred EecCCCEEEEeccChHH-----------HhccccCcccCCHHHHHHHHHHhCCcc
Confidence 77888776665544332 12233 4578999999987655443
No 19
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=32.49 E-value=36 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.615 Sum_probs=17.2
Q ss_pred CCccccccCCCCceEEecCCCcccCccccCCC
Q 017819 16 WARVCDTCRAAACTVYCKADMAYLCSACDSRV 47 (365)
Q Consensus 16 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rv 47 (365)
|.+.|-.|+..- .+.+..|..|.+++
T Consensus 1 m~~~Cp~Cg~~~------~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 1 MEMFCPNCGAEI------DPDAKFCPNCGAKL 26 (26)
T ss_pred CcCCCcccCCcC------CcccccChhhCCCC
Confidence 356677777742 55678888887653
No 20
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=28.24 E-value=30 Score=26.03 Aligned_cols=31 Identities=29% Similarity=0.670 Sum_probs=17.8
Q ss_pred ceEEecCCCcccCccccCCCccchhhhccccccccccccC
Q 017819 28 CTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCE 67 (365)
Q Consensus 28 A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~lCd~C~ 67 (365)
.+.-|..-...+|..||.-|| +....|..|+
T Consensus 20 ~~y~C~~C~~~FC~dCD~fiH---------E~LH~CPGC~ 50 (51)
T PF07975_consen 20 SRYRCPKCKNHFCIDCDVFIH---------ETLHNCPGCE 50 (51)
T ss_dssp EEE--TTTT--B-HHHHHTTT---------TTS-SSSTT-
T ss_pred CeEECCCCCCccccCcChhhh---------ccccCCcCCC
Confidence 456677777899999999887 4455677775
No 21
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.88 E-value=44 Score=36.94 Aligned_cols=47 Identities=17% Similarity=0.397 Sum_probs=28.6
Q ss_pred eEEecCCC-cccCccccCCCccchhhhccccccccccccCCccceeecccccchhcccccc
Q 017819 29 TVYCKADM-AYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDA 88 (365)
Q Consensus 29 ~vyC~aD~-A~LC~~CD~rvH~AN~LasrH~Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~ 88 (365)
.|+|+... ..-|..||..+.- ++..+...|..|+..... ..|..|..
T Consensus 383 ~l~C~~Cg~~~~C~~C~~~L~~-----h~~~~~l~Ch~CG~~~~p--------~~Cp~Cgs 430 (665)
T PRK14873 383 SLACARCRTPARCRHCTGPLGL-----PSAGGTPRCRWCGRAAPD--------WRCPRCGS 430 (665)
T ss_pred eeEhhhCcCeeECCCCCCceeE-----ecCCCeeECCCCcCCCcC--------ccCCCCcC
Confidence 44454442 4789999976542 133567889999974322 35666743
No 22
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=26.20 E-value=17 Score=31.28 Aligned_cols=31 Identities=23% Similarity=0.643 Sum_probs=12.2
Q ss_pred ccccccccccCCccc---eeecc----cccchhccccc
Q 017819 57 HERVFVCESCEQAPA---AFLCK----ADAASLCAACD 87 (365)
Q Consensus 57 H~Rv~lCd~C~~apA---~v~C~----aD~a~LC~~CD 87 (365)
...|.+|+-|..-.- -+.|- ...|+-|..|-
T Consensus 40 ~~~VrICdeCs~G~~~~rCIiCg~~~g~sdAYYC~eC~ 77 (106)
T PF03660_consen 40 CTKVRICDECSFGSLQGRCIICGSGPGVSDAYYCWECV 77 (106)
T ss_dssp -EE-EEEHHHHTSSTTSB-TTTSSSB--EE-EE-HHHH
T ss_pred cceEEECCcCCCCCcCceEEEecCCCCcccceehhhhH
Confidence 456677765543211 12232 13456677773
No 23
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=24.57 E-value=40 Score=34.49 Aligned_cols=45 Identities=29% Similarity=0.755 Sum_probs=33.8
Q ss_pred CccccccCC---CCceEEecCCCcccCccccCCCccchhhhccccccccccccCCcc
Q 017819 17 ARVCDTCRA---AACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAP 70 (365)
Q Consensus 17 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~lCd~C~~ap 70 (365)
.+.|=.|.. ....+.|....-.+|.+||.-|| +-...|..|+..|
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iH---------esLh~CpgCeh~~ 377 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIH---------ESLHNCPGCEHKP 377 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHH---------hhhhcCCCcCCCC
Confidence 456989921 24578899999999999999887 3455788888654
No 24
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=23.66 E-value=73 Score=32.17 Aligned_cols=49 Identities=29% Similarity=0.309 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhcc-------cCCCcccchhhhhhhhhCCC-CCcccccCCchhh
Q 017819 295 DREARVLRYREKKKTR-------KFEKTIRYASRKAYAETRPR-IKGRFAKRTDAEV 343 (365)
Q Consensus 295 ~R~~~v~ry~eKr~~R-------~f~k~irY~~Rk~~A~~RpR-ikGrF~k~~~~~~ 343 (365)
.-..+|+|-|+-|-+- +=-|+---++|-..|-+||| --|||....+.+.
T Consensus 191 KQY~~IlrRRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~ 247 (307)
T KOG1561|consen 191 KQYHRILRRRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHD 247 (307)
T ss_pred HHHHHHHHHHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhh
Confidence 4455666665554322 22234456899999999999 9999999887654
No 25
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.56 E-value=57 Score=38.73 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=18.8
Q ss_pred CCCcccchhhhhhhhhCCCCCcccccCC
Q 017819 312 FEKTIRYASRKAYAETRPRIKGRFAKRT 339 (365)
Q Consensus 312 f~k~irY~~Rk~~A~~RpRikGrF~k~~ 339 (365)
|+++.+|+.=|.+.+.--||+-|.-+..
T Consensus 1151 Yeat~~~~~p~ev~~~i~~ve~rlg~~~ 1178 (1337)
T PRK14714 1151 YEATLEMADPKDVEDLIERVEDRLGTPE 1178 (1337)
T ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCch
Confidence 5667777777777766666666665544
No 26
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=22.47 E-value=18 Score=34.90 Aligned_cols=53 Identities=25% Similarity=0.514 Sum_probs=39.1
Q ss_pred CCCccccccCCCC-------ceEEecCC-CcccCccccCCCccchhhhccccccc------cccccCC
Q 017819 15 SWARVCDTCRAAA-------CTVYCKAD-MAYLCSACDSRVHVANRVAFRHERVF------VCESCEQ 68 (365)
Q Consensus 15 ~~~~~Cd~C~~~~-------A~vyC~aD-~A~LC~~CD~rvH~AN~LasrH~Rv~------lCd~C~~ 68 (365)
...-.|++|+..- --+-|+.| .-+||..|..-+|-+=.| .||.|.. .|..|+.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdl-krh~rthtgvrpykc~~c~k 181 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDL-KRHTRTHTGVRPYKCSLCEK 181 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhh-hhhhccccCccccchhhhhH
Confidence 3467899998752 24789999 579999999988866443 7888763 5777765
No 27
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.18 E-value=74 Score=35.15 Aligned_cols=50 Identities=22% Similarity=0.633 Sum_probs=30.2
Q ss_pred ccccccCCCCceEEecCCCcccCccccCCCccchhhhccccccccccccCCccceeecccccchhcccccccc
Q 017819 18 RVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAEI 90 (365)
Q Consensus 18 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~~i 90 (365)
..|-.|+.. -.+.|.+|..|.+.+. + ..|..|+... ...+.+|..|-...
T Consensus 2 ~~Cp~Cg~~------n~~~akFC~~CG~~l~--------~---~~Cp~CG~~~------~~~~~fC~~CG~~~ 51 (645)
T PRK14559 2 LICPQCQFE------NPNNNRFCQKCGTSLT--------H---KPCPQCGTEV------PVDEAHCPNCGAET 51 (645)
T ss_pred CcCCCCCCc------CCCCCccccccCCCCC--------C---CcCCCCCCCC------CcccccccccCCcc
Confidence 357778776 2567888888877652 1 2588888642 22344555555443
No 28
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=21.69 E-value=64 Score=21.58 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhh
Q 017819 293 PMDREARVLRYREKK 307 (365)
Q Consensus 293 ~~~R~~~v~ry~eKr 307 (365)
...|++||.-|.+||
T Consensus 14 ~r~reeRla~y~aKK 28 (28)
T PF10587_consen 14 ERIREERLAAYAAKK 28 (28)
T ss_pred HHHHHHHHHHHHccC
Confidence 356899999999886
No 29
>PF12251 zf-SNAP50_C: snRNA-activating protein of 50kDa MW C terminal; InterPro: IPR022042 This domain family is found in eukaryotes, and is typically between 196 and 207 amino acids in length. There is a conserved CEH sequence motif. SNAP50 is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.
Probab=20.49 E-value=54 Score=30.67 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=30.5
Q ss_pred CCCccccccCCCCceEEecCC------CcccCccccCCCcc
Q 017819 15 SWARVCDTCRAAACTVYCKAD------MAYLCSACDSRVHV 49 (365)
Q Consensus 15 ~~~~~Cd~C~~~~A~vyC~aD------~A~LC~~CD~rvH~ 49 (365)
.+.+.|.+|+...|.+.+..| -+++|..|=..+|.
T Consensus 137 ~~~~~C~vC~~~~A~~v~~~d~~~p~~P~~~C~~Cf~~lhy 177 (196)
T PF12251_consen 137 FRRRKCSVCGIYPAKWVTYNDELAPEDPCFFCDSCFRLLHY 177 (196)
T ss_pred cccccCCCCCCCCCEEEEECCccCCCCCchhHHHHHHHhCC
Confidence 357999999999999999866 36999999888887
Done!