Query 017819
Match_columns 365
No_of_seqs 293 out of 813
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 97.9 4.4E-06 1.5E-10 67.1 2.6 82 18-105 4-99 (101)
2 3ogl_Q JAZ1 incomplete degron 95.0 0.013 4.4E-07 35.4 2.1 19 293-311 3-21 (21)
3 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.019 6.7E-07 45.6 1.7 43 61-103 4-49 (101)
4 3ogk_Q JAZ1 incomplete degron 91.8 0.05 1.7E-06 33.3 0.9 19 296-314 1-19 (22)
5 2ffw_A Midline-1; B-BOX, ring 87.9 0.2 6.9E-06 38.8 1.8 44 60-103 30-76 (78)
6 2yvr_A Transcription intermedi 75.5 1.5 5.1E-05 30.4 2.2 43 58-106 4-46 (50)
7 2d8u_A Ubiquitin ligase TRIM63 75.4 1.4 4.9E-05 31.9 2.2 46 55-106 3-49 (64)
8 2did_A Tripartite motif protei 67.1 3.2 0.00011 29.0 2.4 39 61-106 9-48 (53)
9 3ddt_A E3 ubiquitin-protein li 66.5 3.1 0.0001 28.6 2.1 40 61-106 7-47 (48)
10 1fre_A Nuclear factor XNF7; zi 65.2 3.5 0.00012 27.3 2.2 30 62-92 5-35 (42)
11 4hc9_A Trans-acting T-cell-spe 64.3 1.2 4.2E-05 37.2 -0.4 73 16-88 4-88 (115)
12 2did_A Tripartite motif protei 64.1 7 0.00024 27.2 3.7 42 17-65 8-50 (53)
13 2dja_A Midline-2; tripartite m 61.6 3.6 0.00012 31.3 1.9 43 58-106 16-59 (84)
14 1fre_A Nuclear factor XNF7; zi 58.0 5.8 0.0002 26.2 2.2 32 18-50 4-36 (42)
15 2ffw_A Midline-1; B-BOX, ring 56.6 3.5 0.00012 31.7 1.0 43 17-59 30-75 (78)
16 2yrg_A Tripartite motif-contai 56.5 5.9 0.0002 28.6 2.2 40 60-106 14-54 (59)
17 4g92_A HAPB protein; transcrip 54.4 15 0.00051 27.9 4.1 27 313-339 36-63 (64)
18 2lri_C Autoimmune regulator; Z 54.1 6.5 0.00022 29.5 2.1 45 17-69 12-59 (66)
19 1v6g_A Actin binding LIM prote 50.6 6 0.00021 29.5 1.5 61 29-90 3-73 (81)
20 2yrg_A Tripartite motif-contai 49.6 9.4 0.00032 27.5 2.3 41 17-64 14-55 (59)
21 2d8u_A Ubiquitin ligase TRIM63 49.3 15 0.00051 26.3 3.4 47 17-69 8-55 (64)
22 2yql_A PHD finger protein 21A; 47.6 9.2 0.00031 27.3 2.0 45 15-67 7-54 (56)
23 1mm2_A MI2-beta; PHD, zinc fin 44.8 30 0.001 25.1 4.5 47 16-70 8-57 (61)
24 2jne_A Hypothetical protein YF 43.8 12 0.00041 30.7 2.3 67 6-88 21-89 (101)
25 1f62_A Transcription factor WS 43.3 15 0.0005 25.5 2.5 46 19-69 2-50 (51)
26 2dja_A Midline-2; tripartite m 42.4 18 0.00062 27.2 3.1 46 17-68 18-64 (84)
27 2csv_A Tripartite motif protei 41.0 12 0.00041 27.7 1.8 39 61-106 19-57 (72)
28 2egm_A Tripartite motif-contai 39.6 7.8 0.00027 27.8 0.5 31 61-92 19-50 (57)
29 2d8v_A Zinc finger FYVE domain 37.6 19 0.00066 27.5 2.5 48 57-106 5-53 (67)
30 2yvr_A Transcription intermedi 37.1 19 0.00066 24.5 2.3 33 17-49 6-38 (50)
31 1z60_A TFIIH basal transcripti 34.2 12 0.00041 27.8 0.8 32 18-49 16-50 (59)
32 2egm_A Tripartite motif-contai 33.4 28 0.00097 24.7 2.8 28 17-45 18-45 (57)
33 3ddt_A E3 ubiquitin-protein li 33.4 26 0.00088 23.7 2.4 33 18-50 7-40 (48)
34 2k0a_A PRE-mRNA-splicing facto 33.3 8.8 0.0003 31.8 -0.0 41 40-87 32-79 (109)
35 2e6r_A Jumonji/ARID domain-con 32.9 20 0.00067 28.3 2.0 29 17-50 16-44 (92)
36 2egq_A FHL1 protein; LIM domai 31.1 16 0.00054 26.7 1.1 58 30-87 4-74 (77)
37 2ro1_A Transcription intermedi 30.2 33 0.0011 30.3 3.2 44 19-70 4-50 (189)
38 1x63_A Skeletal muscle LIM-pro 30.1 17 0.00059 26.8 1.2 62 29-90 3-74 (82)
39 2ehe_A Four and A half LIM dom 29.0 28 0.00096 25.7 2.2 61 29-89 3-73 (82)
40 1fp0_A KAP-1 corepressor; PHD 28.5 59 0.002 25.7 4.1 46 17-70 25-73 (88)
41 2l5u_A Chromodomain-helicase-D 26.2 43 0.0015 24.2 2.7 45 16-68 10-57 (61)
42 2csv_A Tripartite motif protei 23.3 49 0.0017 24.2 2.5 32 17-49 18-49 (72)
43 2dj7_A Actin-binding LIM prote 23.1 46 0.0016 24.8 2.4 54 36-89 14-71 (80)
44 2rgt_A Fusion of LIM/homeobox 21.9 36 0.0012 28.9 1.8 63 28-90 52-126 (169)
45 2fc7_A ZZZ3 protein; structure 21.3 1.3E+02 0.0044 23.2 4.7 35 56-91 18-59 (82)
46 1x6a_A LIMK-2, LIM domain kina 20.7 54 0.0018 24.1 2.3 60 30-90 4-74 (81)
47 2yqq_A Zinc finger HIT domain- 20.4 43 0.0015 24.5 1.6 26 58-84 10-35 (56)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.89 E-value=4.4e-06 Score=67.14 Aligned_cols=82 Identities=21% Similarity=0.444 Sum_probs=64.7
Q ss_pred ccccccCC---CCceEEecCCCcccCccccCCCccchhhhcccccc-c---------cccccCCccceeecccccchhcc
Q 017819 18 RVCDTCRA---AACTVYCKADMAYLCSACDSRVHVANRVAFRHERV-F---------VCESCEQAPAAFLCKADAASLCA 84 (365)
Q Consensus 18 ~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv-~---------lCd~C~~apA~v~C~aD~a~LC~ 84 (365)
..|+.|.. .+|+.+|....+.||..|...+|..++...+|..+ + +|+.....+-.+||..|...+|.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~ 83 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICA 83 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccch
Confidence 56999984 68999999999999999999999887766788765 2 34444334567999999999999
Q ss_pred cccc-cccCCCCcCCCcceeec
Q 017819 85 ACDA-EIHSANPLARRHQRVPI 105 (365)
Q Consensus 85 ~CD~-~iHsaN~La~rH~Rvpv 105 (365)
.|.. ..|.. |.-+||
T Consensus 84 ~C~~~~~H~~------H~~~~l 99 (101)
T 2jun_A 84 LCKLVGRHRD------HQVAAL 99 (101)
T ss_dssp HHHHHTTTSS------SCBCCC
T ss_pred hcCCCCCcCC------CCeecC
Confidence 9986 67743 665554
No 2
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.95 E-value=0.013 Score=35.45 Aligned_cols=19 Identities=42% Similarity=0.707 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhccc.....
Q 017819 293 PMDREARVLRYREKKKTRK..... 311 (365)
Q Consensus 293 ~~~R~~~v~ry~eKr~~R~..... 311 (365)
|..|.+.|+||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 5689999999999999873
No 3
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.94 E-value=0.019 Score=45.56 Aligned_cols=43 Identities=23% Similarity=0.484 Sum_probs=37.3
Q ss_pred ccccccCC---ccceeecccccchhcccccccccCCCCcCCCccee
Q 017819 61 FVCESCEQ---APAAFLCKADAASLCAACDAEIHSANPLARRHQRV 103 (365)
Q Consensus 61 ~lCd~C~~---apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rv 103 (365)
..|++|.. .+|+.+|..+...||..|...+|..++...+|..+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 57999984 57999999999999999999999877766788876
No 4
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=91.79 E-value=0.05 Score=33.30 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhcccCCC
Q 017819 296 REARVLRYREKKKTRKFEK 314 (365)
Q Consensus 296 R~~~v~ry~eKr~~R~f~k 314 (365)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5678999999999987654
No 5
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=87.89 E-value=0.2 Score=38.79 Aligned_cols=44 Identities=23% Similarity=0.460 Sum_probs=36.2
Q ss_pred cccccccCC---ccceeecccccchhcccccccccCCCCcCCCccee
Q 017819 60 VFVCESCEQ---APAAFLCKADAASLCAACDAEIHSANPLARRHQRV 103 (365)
Q Consensus 60 v~lCd~C~~---apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rv 103 (365)
...|++|.. .+|...|..+.+.+|..|-...|...+...+|.-+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 367999985 56889999999999999988878876666778654
No 6
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=75.48 E-value=1.5 Score=30.38 Aligned_cols=43 Identities=23% Similarity=0.521 Sum_probs=32.2
Q ss_pred cccccccccCCccceeecccccchhcccccccccCCCCcCCCcceeecc
Q 017819 58 ERVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPIL 106 (365)
Q Consensus 58 ~Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv~ 106 (365)
.+..+|..-...+-.+||..|...+|..|...-|. .|.-+||.
T Consensus 4 ~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 4 ERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp CCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred cCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 45566766644567799999999999999876664 47777765
No 7
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=75.40 E-value=1.4 Score=31.85 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=33.6
Q ss_pred ccccccccccccCCccceeecccccchhcccccc-cccCCCCcCCCcceeecc
Q 017819 55 FRHERVFVCESCEQAPAAFLCKADAASLCAACDA-EIHSANPLARRHQRVPIL 106 (365)
Q Consensus 55 srH~Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~-~iHsaN~La~rH~Rvpv~ 106 (365)
.+..+..+|+.-...+-.+||..|...+|..|.. .-|. .|.-+||.
T Consensus 3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 49 (64)
T 2d8u_A 3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 49 (64)
T ss_dssp CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHH
Confidence 3455666777765556789999999999999975 4664 37766665
No 8
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=67.14 E-value=3.2 Score=29.03 Aligned_cols=39 Identities=23% Similarity=0.606 Sum_probs=29.2
Q ss_pred ccccccCCccceeecccccchhcccccc-cccCCCCcCCCcceeecc
Q 017819 61 FVCESCEQAPAAFLCKADAASLCAACDA-EIHSANPLARRHQRVPIL 106 (365)
Q Consensus 61 ~lCd~C~~apA~v~C~aD~a~LC~~CD~-~iHsaN~La~rH~Rvpv~ 106 (365)
.+|+.-. .+-.+||..|...+|..|.. .-|. .|..+||.
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 48 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLS 48 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECC
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHH
Confidence 4566655 45678999999999999986 5663 47777765
No 9
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=66.47 E-value=3.1 Score=28.59 Aligned_cols=40 Identities=23% Similarity=0.499 Sum_probs=27.7
Q ss_pred ccccccCCccceeecccccchhccccc-ccccCCCCcCCCcceeecc
Q 017819 61 FVCESCEQAPAAFLCKADAASLCAACD-AEIHSANPLARRHQRVPIL 106 (365)
Q Consensus 61 ~lCd~C~~apA~v~C~aD~a~LC~~CD-~~iHsaN~La~rH~Rvpv~ 106 (365)
.+|..=...+-.+||..|...+|..|. ..-|.. |.-+||.
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~------H~~~~l~ 47 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA------CEVAPLQ 47 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT------SCEEECC
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcCCC------CcEEeCC
Confidence 445543334467999999999999997 456753 6666653
No 10
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=65.21 E-value=3.5 Score=27.33 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=22.1
Q ss_pred cccccCCccceeecccccchhcccccc-cccC
Q 017819 62 VCESCEQAPAAFLCKADAASLCAACDA-EIHS 92 (365)
Q Consensus 62 lCd~C~~apA~v~C~aD~a~LC~~CD~-~iHs 92 (365)
+|+.-+ .+-.+||..|...+|..|.. .-|.
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 354443 35678999999999999986 4554
No 11
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=64.30 E-value=1.2 Score=37.17 Aligned_cols=73 Identities=22% Similarity=0.578 Sum_probs=48.0
Q ss_pred CCccccccCCCCceEEecCC-CcccCcccc--CCCccchhhhccc--------cccccccccCCccceeeccc-ccchhc
Q 017819 16 WARVCDTCRAAACTVYCKAD-MAYLCSACD--SRVHVANRVAFRH--------ERVFVCESCEQAPAAFLCKA-DAASLC 83 (365)
Q Consensus 16 ~~~~Cd~C~~~~A~vyC~aD-~A~LC~~CD--~rvH~AN~LasrH--------~Rv~lCd~C~~apA~v~C~a-D~a~LC 83 (365)
..+.|..|++....+.=+.+ .-+||..|. .+.|+.|.-..+. .....|..|+......|-+. +...||
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 57899999977555555555 458999998 4556655422111 12357999998877776664 345899
Q ss_pred ccccc
Q 017819 84 AACDA 88 (365)
Q Consensus 84 ~~CD~ 88 (365)
-+|-.
T Consensus 84 NaCgl 88 (115)
T 4hc9_A 84 NACGL 88 (115)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 99985
No 12
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=64.13 E-value=7 Score=27.22 Aligned_cols=42 Identities=24% Similarity=0.506 Sum_probs=30.9
Q ss_pred CccccccCCCCceEEecCCCcccCccccC-CCccchhhhccccccccccc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDS-RVHVANRVAFRHERVFVCES 65 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-rvH~AN~LasrH~Rv~lCd~ 65 (365)
.+.|..=. .+-.+||..|...+|..|-. .-|.. |..+++-+.
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~~------H~~~~l~ea 50 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHRA------HTVVPLSGP 50 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTTT------SCEEECCCT
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCCC------CcEeeHHHH
Confidence 45687776 56799999999999999975 55643 555555543
No 13
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=61.64 E-value=3.6 Score=31.28 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=29.9
Q ss_pred cccccccccCCccceeecccccchhcccccc-cccCCCCcCCCcceeecc
Q 017819 58 ERVFVCESCEQAPAAFLCKADAASLCAACDA-EIHSANPLARRHQRVPIL 106 (365)
Q Consensus 58 ~Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~-~iHsaN~La~rH~Rvpv~ 106 (365)
....+|+.-...+-.+||..|...+|..|.. .-|. .|.-+||.
T Consensus 16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 59 (84)
T 2dja_A 16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN 59 (84)
T ss_dssp SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHH
Confidence 3344566554445779999999999999987 5663 36655554
No 14
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=58.03 E-value=5.8 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.578 Sum_probs=24.0
Q ss_pred ccccccCCCCceEEecCCCcccCccccC-CCccc
Q 017819 18 RVCDTCRAAACTVYCKADMAYLCSACDS-RVHVA 50 (365)
Q Consensus 18 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-rvH~A 50 (365)
+.|..=. .+-.+||..|...+|..|-. .-|..
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 3465555 45689999999999999976 45544
No 15
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=56.60 E-value=3.5 Score=31.68 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=34.2
Q ss_pred CccccccCC---CCceEEecCCCcccCccccCCCccchhhhccccc
Q 017819 17 ARVCDTCRA---AACTVYCKADMAYLCSACDSRVHVANRVAFRHER 59 (365)
Q Consensus 17 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~R 59 (365)
...||+|.. .+|+-.|-.-.+.||..|=...|...+...+|.-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 578999975 6799999999999999997756776555566653
No 16
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.51 E-value=5.9 Score=28.60 Aligned_cols=40 Identities=23% Similarity=0.524 Sum_probs=29.2
Q ss_pred cccccccCCccceeecccccchhcccccc-cccCCCCcCCCcceeecc
Q 017819 60 VFVCESCEQAPAAFLCKADAASLCAACDA-EIHSANPLARRHQRVPIL 106 (365)
Q Consensus 60 v~lCd~C~~apA~v~C~aD~a~LC~~CD~-~iHsaN~La~rH~Rvpv~ 106 (365)
..+|..-. .+-.+||..|...+|..|.. .-|. .|..+||.
T Consensus 14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ 54 (59)
T 2yrg_A 14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTS 54 (59)
T ss_dssp SSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECC
T ss_pred CccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHH
Confidence 34566554 35678999999999999986 5564 37777765
No 17
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=54.42 E-value=15 Score=27.88 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.4
Q ss_pred CCcccchhhhhhhhhCCC-CCcccccCC
Q 017819 313 EKTIRYASRKAYAETRPR-IKGRFAKRT 339 (365)
Q Consensus 313 ~k~irY~~Rk~~A~~RpR-ikGrF~k~~ 339 (365)
.|+.-++||-.-|-.||| -.|||.+..
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 456779999999999999 889998765
No 18
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=54.12 E-value=6.5 Score=29.48 Aligned_cols=45 Identities=20% Similarity=0.436 Sum_probs=32.4
Q ss_pred CccccccCCCCceEEecCCCcccCccccCCCccc---hhhhccccccccccccCCc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVA---NRVAFRHERVFVCESCEQA 69 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~A---N~LasrH~Rv~lCd~C~~a 69 (365)
...|..|+.. +...+|..|+.-+|.. -+|...-...|.|..|...
T Consensus 12 ~~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4569999853 4567888999999973 2455666677889888753
No 19
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.62 E-value=6 Score=29.54 Aligned_cols=61 Identities=20% Similarity=0.394 Sum_probs=38.7
Q ss_pred eEEecCCC----cccCccccCCCccchhhh----ccccccccccccCCccc--eeecccccchhcccccccc
Q 017819 29 TVYCKADM----AYLCSACDSRVHVANRVA----FRHERVFVCESCEQAPA--AFLCKADAASLCAACDAEI 90 (365)
Q Consensus 29 ~vyC~aD~----A~LC~~CD~rvH~AN~La----srH~Rv~lCd~C~~apA--~v~C~aD~a~LC~~CD~~i 90 (365)
.+||+.|- +..|..|+..|.+ ..|. .-|..--.|..|...-. .++-..+...+|..|-..+
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 46888883 4689999998873 3332 23666667888886532 3343444445788886544
No 20
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.58 E-value=9.4 Score=27.49 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=29.4
Q ss_pred CccccccCCCCceEEecCCCcccCccccC-CCccchhhhcccccccccc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDS-RVHVANRVAFRHERVFVCE 64 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-rvH~AN~LasrH~Rv~lCd 64 (365)
.+.|..-. .+-.+||..|...+|..|-. .-|.. |..+++-+
T Consensus 14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~~------H~~~~l~e 55 (59)
T 2yrg_A 14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQEHRG------HHTFPTSG 55 (59)
T ss_dssp SSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTTT------CCEEECCS
T ss_pred CccChhhC-ceeeeecCCCCcEEecccCCCCcCCC------CcEeeHHH
Confidence 35677766 45789999999999999976 45543 55555543
No 21
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=49.30 E-value=15 Score=26.27 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=34.7
Q ss_pred CccccccCCCCceEEecCCCcccCccccC-CCccchhhhccccccccccccCCc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDS-RVHVANRVAFRHERVFVCESCEQA 69 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-rvH~AN~LasrH~Rv~lCd~C~~a 69 (365)
...|..=...+-.+||..|...+|..|-. .-|.. |.-+++-+.....
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~------H~~~~l~~a~~~~ 55 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA------CEVAPLQSVFQGQ 55 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTS------SCEECTTTCCSSC
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcCCC------CCeeCHHHHHHHH
Confidence 45677775566789999999999999964 46653 7777777665543
No 22
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.63 E-value=9.2 Score=27.30 Aligned_cols=45 Identities=18% Similarity=0.624 Sum_probs=28.4
Q ss_pred CCCccccccCCCCceEEecCCCcccCccccCCCccc---hhhhccccccccccccC
Q 017819 15 SWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVA---NRVAFRHERVFVCESCE 67 (365)
Q Consensus 15 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~A---N~LasrH~Rv~lCd~C~ 67 (365)
.....|..|+.. +.-.+|..|+.-+|.. -+|.......|.|..|.
T Consensus 7 ~~~~~C~vC~~~--------g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS--------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS--------SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC--------CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 346679999874 3567788899888863 22333334456666654
No 23
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=44.81 E-value=30 Score=25.10 Aligned_cols=47 Identities=17% Similarity=0.492 Sum_probs=31.2
Q ss_pred CCccccccCCCCceEEecCCCcccCccccCCCccc---hhhhccccccccccccCCcc
Q 017819 16 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVA---NRVAFRHERVFVCESCEQAP 70 (365)
Q Consensus 16 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~A---N~LasrH~Rv~lCd~C~~ap 70 (365)
....|..|+.. +.-.+|..|+.-+|.. -+|...-.-.|.|..|...+
T Consensus 8 ~~~~C~vC~~~--------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG--------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC--------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC--------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 35669999853 4578888999988874 12434444567787776543
No 24
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.81 E-value=12 Score=30.73 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=38.8
Q ss_pred cCCCCCCCCCCCccccccCCCCceEEecCCCcccCccccCCCccchhhhccccccccccccCCccceeecccccc--hhc
Q 017819 6 SNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAA--SLC 83 (365)
Q Consensus 6 ~~~~~~~~~~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~lCd~C~~apA~v~C~aD~a--~LC 83 (365)
+++.-.++..|...|..|...- .+ .+..+.|..|+.. =.+..+|+-|+..--.+ +++.| ++|
T Consensus 21 ~~~~~~~~~~M~~~CP~Cq~eL-~~---~g~~~hC~~C~~~----------f~~~a~CPdC~q~LevL--kACGAvdYFC 84 (101)
T 2jne_A 21 SSGLVPRGSHMELHCPQCQHVL-DQ---DNGHARCRSCGEF----------IEMKALCPDCHQPLQVL--KACGAVDYFC 84 (101)
T ss_dssp ----------CCCBCSSSCSBE-EE---ETTEEEETTTCCE----------EEEEEECTTTCSBCEEE--EETTEEEEEE
T ss_pred ccccccCcccccccCccCCCcc-ee---cCCEEECccccch----------hhccccCcchhhHHHHH--HHhcCcchhh
Confidence 3444455566899999999863 23 2445569999873 35678899999755443 34432 678
Q ss_pred ccccc
Q 017819 84 AACDA 88 (365)
Q Consensus 84 ~~CD~ 88 (365)
..|..
T Consensus 85 ~~chg 89 (101)
T 2jne_A 85 QHGHG 89 (101)
T ss_dssp TTTTE
T ss_pred ccCCc
Confidence 88743
No 25
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.33 E-value=15 Score=25.48 Aligned_cols=46 Identities=24% Similarity=0.614 Sum_probs=30.4
Q ss_pred cccccCCCCceEEecCCCcccCccccCCCccc--h-hhhccccccccccccCCc
Q 017819 19 VCDTCRAAACTVYCKADMAYLCSACDSRVHVA--N-RVAFRHERVFVCESCEQA 69 (365)
Q Consensus 19 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~A--N-~LasrH~Rv~lCd~C~~a 69 (365)
.|..|+... ..+.-.+|..|+.-+|.. + +|.......|.|..|..+
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 477787652 234567788999888873 2 355555567888888653
No 26
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=42.37 E-value=18 Score=27.25 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=34.1
Q ss_pred CccccccCCCCceEEecCCCcccCccccC-CCccchhhhccccccccccccCC
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDS-RVHVANRVAFRHERVFVCESCEQ 68 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-rvH~AN~LasrH~Rv~lCd~C~~ 68 (365)
...|..=...+-.+||..|...+|..|-. .-|.. |.-+++-+....
T Consensus 18 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~------H~~~~l~ea~~~ 64 (84)
T 2dja_A 18 GITCLDHENEKVNMYCVSDDQLICALCKLVGRHRD------HQVASLNDRFEK 64 (84)
T ss_dssp CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTTT------CCBCCCCSSCCC
T ss_pred CCcCcCcCCccccEEcCCCCceEcccCcCCCCCCC------CCccCHHHHHHH
Confidence 45677775566799999999999999976 55643 666777666554
No 27
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=40.97 E-value=12 Score=27.69 Aligned_cols=39 Identities=21% Similarity=0.489 Sum_probs=28.9
Q ss_pred ccccccCCccceeecccccchhcccccccccCCCCcCCCcceeecc
Q 017819 61 FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPIL 106 (365)
Q Consensus 61 ~lCd~C~~apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv~ 106 (365)
.+|+.-+ .+-.+||..|...+|..|...-|. .|.-+||.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ 57 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVE 57 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHH
Confidence 4566653 466789999999999999876664 37666654
No 28
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.57 E-value=7.8 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.657 Sum_probs=23.5
Q ss_pred ccccccCCccceeecccccchhcccccc-cccC
Q 017819 61 FVCESCEQAPAAFLCKADAASLCAACDA-EIHS 92 (365)
Q Consensus 61 ~lCd~C~~apA~v~C~aD~a~LC~~CD~-~iHs 92 (365)
.+|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 3566553 45678999999999999986 5564
No 29
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.62 E-value=19 Score=27.46 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=38.5
Q ss_pred ccccccccccCCccceeecccc-cchhcccccccccCCCCcCCCcceeecc
Q 017819 57 HERVFVCESCEQAPAAFLCKAD-AASLCAACDAEIHSANPLARRHQRVPIL 106 (365)
Q Consensus 57 H~Rv~lCd~C~~apA~v~C~aD-~a~LC~~CD~~iHsaN~La~rH~Rvpv~ 106 (365)
-+-.+-|-+|... |++.|..+ .-..|..|-++.|- ..--+.|+.++..
T Consensus 5 ~ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 5 SSGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYH 53 (67)
T ss_dssp CCCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCC
T ss_pred CcCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeecc
Confidence 3456789999985 99999986 66889999999995 4556789998864
No 30
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=37.09 E-value=19 Score=24.51 Aligned_cols=33 Identities=15% Similarity=0.510 Sum_probs=25.6
Q ss_pred CccccccCCCCceEEecCCCcccCccccCCCcc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHV 49 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~ 49 (365)
...|..=...+-.+||..|...+|..|-..-|.
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~ 38 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK 38 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC
Confidence 456777755567899999999999999764453
No 31
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.21 E-value=12 Score=27.77 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=24.4
Q ss_pred ccccccCCCCc---eEEecCCCcccCccccCCCcc
Q 017819 18 RVCDTCRAAAC---TVYCKADMAYLCSACDSRVHV 49 (365)
Q Consensus 18 ~~Cd~C~~~~A---~vyC~aD~A~LC~~CD~rvH~ 49 (365)
+.|-.|...-. +.-|..-...+|..||.-||-
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHh
Confidence 45888877532 344888889999999998883
No 32
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.45 E-value=28 Score=24.72 Aligned_cols=28 Identities=21% Similarity=0.703 Sum_probs=23.4
Q ss_pred CccccccCCCCceEEecCCCcccCccccC
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDS 45 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~ 45 (365)
.+.|..-. .+-.+||..|...+|..|-.
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~ 45 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRE 45 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHH
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCC
Confidence 46787775 56799999999999999974
No 33
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=33.40 E-value=26 Score=23.74 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=23.0
Q ss_pred ccccccCCCCceEEecCCCcccCcccc-CCCccc
Q 017819 18 RVCDTCRAAACTVYCKADMAYLCSACD-SRVHVA 50 (365)
Q Consensus 18 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD-~rvH~A 50 (365)
..|..=...+-.+||..|...+|..|- ..-|..
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 334432225578999999999999995 445654
No 34
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.33 E-value=8.8 Score=31.83 Aligned_cols=41 Identities=34% Similarity=0.783 Sum_probs=21.3
Q ss_pred CccccCCCccchhhhccccccccccccCCcc---ceeecc----cccchhccccc
Q 017819 40 CSACDSRVHVANRVAFRHERVFVCESCEQAP---AAFLCK----ADAASLCAACD 87 (365)
Q Consensus 40 C~~CD~rvH~AN~LasrH~Rv~lCd~C~~ap---A~v~C~----aD~a~LC~~CD 87 (365)
|.-||.-|.- ...|.+|+-|.... .-+.|- ...|+-|..|-
T Consensus 32 C~iCDs~Vrp-------~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 32 CPICDSYVRP-------KRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp CTTTCCCCCC-------CEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred ccccCCccCC-------cceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhh
Confidence 4555554443 35566777666332 123333 12366777775
No 35
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.87 E-value=20 Score=28.35 Aligned_cols=29 Identities=24% Similarity=0.757 Sum_probs=20.2
Q ss_pred CccccccCCCCceEEecCCCcccCccccCCCccc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVA 50 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~A 50 (365)
...|..|+... ..+.-.+|..|+.-+|..
T Consensus 16 ~~~C~vC~~~~-----~~~~ll~CD~C~~~~H~~ 44 (92)
T 2e6r_A 16 SYICQVCSRGD-----EDDKLLFCDGCDDNYHIF 44 (92)
T ss_dssp CCCCSSSCCSG-----GGGGCEECTTTCCEECSS
T ss_pred CCCCccCCCcC-----CCCCEEEcCCCCchhccc
Confidence 45799998753 134567788899887763
No 36
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=31.05 E-value=16 Score=26.75 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=34.3
Q ss_pred EEecCCC----cccCccccCCCcc----chhhh----ccccccccccccCCccce-eecccccchhccccc
Q 017819 30 VYCKADM----AYLCSACDSRVHV----ANRVA----FRHERVFVCESCEQAPAA-FLCKADAASLCAACD 87 (365)
Q Consensus 30 vyC~aD~----A~LC~~CD~rvH~----AN~La----srH~Rv~lCd~C~~apA~-v~C~aD~a~LC~~CD 87 (365)
+||..|- +..|..|...|.. +..|. .-|..--.|..|...-.. -+-.-+...+|..|-
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy 74 (77)
T 2egq_A 4 GSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCA 74 (77)
T ss_dssp SCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHH
T ss_pred eEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHh
Confidence 5777663 5779999999985 22221 335556677888755332 123445556666553
No 37
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.20 E-value=33 Score=30.29 Aligned_cols=44 Identities=18% Similarity=0.538 Sum_probs=29.3
Q ss_pred cccccCCCCceEEecCCCcccCccccCCCccc--h-hhhccccccccccccCCcc
Q 017819 19 VCDTCRAAACTVYCKADMAYLCSACDSRVHVA--N-RVAFRHERVFVCESCEQAP 70 (365)
Q Consensus 19 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~A--N-~LasrH~Rv~lCd~C~~ap 70 (365)
.|..|+.. +.-.+|.+|+.-.|.. + +|.....-.|.|..|...+
T Consensus 4 ~C~~C~~~--------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 4 ICRVCQKP--------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CBTTTCCC--------SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred cCccCCCC--------CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 58888754 3467789999988874 1 3444444567888887653
No 38
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.08 E-value=17 Score=26.85 Aligned_cols=62 Identities=15% Similarity=0.346 Sum_probs=38.7
Q ss_pred eEEecCCC----cccCccccCCCccchhhh-----ccccccccccccCCccce-eecccccchhcccccccc
Q 017819 29 TVYCKADM----AYLCSACDSRVHVANRVA-----FRHERVFVCESCEQAPAA-FLCKADAASLCAACDAEI 90 (365)
Q Consensus 29 ~vyC~aD~----A~LC~~CD~rvH~AN~La-----srH~Rv~lCd~C~~apA~-v~C~aD~a~LC~~CD~~i 90 (365)
.+||..|- +..|..|...|..+..+. .-|..-..|..|...-.. -+-.-+...+|..|-...
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 3 SGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp SCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHH
T ss_pred CcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHH
Confidence 45777773 568999999998654422 236666678888765432 233345666777775443
No 39
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.01 E-value=28 Score=25.73 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=38.0
Q ss_pred eEEecCCC----cccCccccCCCccchhhh-----ccccccccccccCCccce-eecccccchhccccccc
Q 017819 29 TVYCKADM----AYLCSACDSRVHVANRVA-----FRHERVFVCESCEQAPAA-FLCKADAASLCAACDAE 89 (365)
Q Consensus 29 ~vyC~aD~----A~LC~~CD~rvH~AN~La-----srH~Rv~lCd~C~~apA~-v~C~aD~a~LC~~CD~~ 89 (365)
.+||..|- +..|..|...|.....+. .-|..--.|..|...-.. -+-.-+...+|..|-..
T Consensus 3 ~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~ 73 (82)
T 2ehe_A 3 SGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCS 73 (82)
T ss_dssp CCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSC
T ss_pred ceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhh
Confidence 35777773 457999999888432221 346666678888865432 23345666777777543
No 40
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.54 E-value=59 Score=25.74 Aligned_cols=46 Identities=20% Similarity=0.548 Sum_probs=30.6
Q ss_pred CccccccCCCCceEEecCCCcccCccccCCCccc---hhhhccccccccccccCCcc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVA---NRVAFRHERVFVCESCEQAP 70 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~A---N~LasrH~Rv~lCd~C~~ap 70 (365)
...|..|+..- .-.+|..|+.-+|.. -+|...-.-.|.|..|...|
T Consensus 25 ~~~C~vC~~~g--------~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 25 ATICRVCQKPG--------DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSCCSSSCSSS--------CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCcCcCcCCCC--------CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 56799998753 456688999888863 23444455567777776543
No 41
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=26.24 E-value=43 Score=24.23 Aligned_cols=45 Identities=22% Similarity=0.602 Sum_probs=29.6
Q ss_pred CCccccccCCCCceEEecCCCcccCccccCCCccc---hhhhccccccccccccCC
Q 017819 16 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVA---NRVAFRHERVFVCESCEQ 68 (365)
Q Consensus 16 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~A---N~LasrH~Rv~lCd~C~~ 68 (365)
....|..|+.. +.-.+|..|+.-+|.. -+|...-...|.|..|..
T Consensus 10 ~~~~C~vC~~~--------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG--------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC--------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC--------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 46779999874 3556688899888863 123333445677777764
No 42
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=23.25 E-value=49 Score=24.24 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=25.5
Q ss_pred CccccccCCCCceEEecCCCcccCccccCCCcc
Q 017819 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHV 49 (365)
Q Consensus 17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~ 49 (365)
.+.|..=. .+-.+||..|...+|..|-..-|.
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~ 49 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK 49 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCCC
Confidence 46787775 567999999999999999764454
No 43
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.15 E-value=46 Score=24.83 Aligned_cols=54 Identities=15% Similarity=0.353 Sum_probs=30.1
Q ss_pred CcccCccccCCCccchhh----hccccccccccccCCccceeecccccchhccccccc
Q 017819 36 MAYLCSACDSRVHVANRV----AFRHERVFVCESCEQAPAAFLCKADAASLCAACDAE 89 (365)
Q Consensus 36 ~A~LC~~CD~rvH~AN~L----asrH~Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~~ 89 (365)
.+..|..|+..|.....| ..-|..-..|..|...-..-+-.-|...+|..|-.+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~ 71 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHA 71 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHH
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHH
Confidence 345566666666533222 134666667777775433334445666777776544
No 44
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.90 E-value=36 Score=28.87 Aligned_cols=63 Identities=29% Similarity=0.535 Sum_probs=41.9
Q ss_pred ceEEecCCC----cccCccccCCCccchhhh-----ccccccccccccCCccc---eeecccccchhcccccccc
Q 017819 28 CTVYCKADM----AYLCSACDSRVHVANRVA-----FRHERVFVCESCEQAPA---AFLCKADAASLCAACDAEI 90 (365)
Q Consensus 28 A~vyC~aD~----A~LC~~CD~rvH~AN~La-----srH~Rv~lCd~C~~apA---~v~C~aD~a~LC~~CD~~i 90 (365)
-.+||..|- +..|..|+..|.....+. .-|..-..|..|+..-. .++-..|...+|..|-...
T Consensus 52 g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~ 126 (169)
T 2rgt_A 52 ESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 126 (169)
T ss_dssp SCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHH
T ss_pred CeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHH
Confidence 357887763 567999998887643321 33666678888887542 3455667778888886543
No 45
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.35 E-value=1.3e+02 Score=23.23 Aligned_cols=35 Identities=23% Similarity=0.739 Sum_probs=24.1
Q ss_pred cccccccccccCCccce---eecccccc----hhccccccccc
Q 017819 56 RHERVFVCESCEQAPAA---FLCKADAA----SLCAACDAEIH 91 (365)
Q Consensus 56 rH~Rv~lCd~C~~apA~---v~C~aD~a----~LC~~CD~~iH 91 (365)
.|..+ .|+.|+..|-. +.|..+.- -||..|-...+
T Consensus 18 ~H~~~-~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 18 QHVGF-KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp EESSC-CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred eeCcC-CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 34443 79999976633 67776654 69999987544
No 46
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.74 E-value=54 Score=24.07 Aligned_cols=60 Identities=20% Similarity=0.397 Sum_probs=37.7
Q ss_pred EEecCCC----cccCccccCCCccchhhh----ccccccccccccCCccc--eeec-ccccchhcccccccc
Q 017819 30 VYCKADM----AYLCSACDSRVHVANRVA----FRHERVFVCESCEQAPA--AFLC-KADAASLCAACDAEI 90 (365)
Q Consensus 30 vyC~aD~----A~LC~~CD~rvH~AN~La----srH~Rv~lCd~C~~apA--~v~C-~aD~a~LC~~CD~~i 90 (365)
.||..|- +..|..|+..|. ...|. .-|..--.|..|...-. ..+. ..+...+|..|-.+.
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~ 74 (81)
T 1x6a_A 4 GSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74 (81)
T ss_dssp CCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred ccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHH
Confidence 4677663 456999988877 32222 23666667888886643 3344 357778888876543
No 47
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.45 E-value=43 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=21.4
Q ss_pred cccccccccCCccceeecccccchhcc
Q 017819 58 ERVFVCESCEQAPAAFLCKADAASLCA 84 (365)
Q Consensus 58 ~Rv~lCd~C~~apA~v~C~aD~a~LC~ 84 (365)
.+..+|.+|+. ++...|..+.+..|-
T Consensus 10 ~~~~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 10 CSTVVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCCCTTTCS-CCSEECTTTCCEESS
T ss_pred CCCCccCcCcC-CCeeeCCCCCCCeeC
Confidence 34457999999 999999999888776
Done!