Query 017822
Match_columns 365
No_of_seqs 181 out of 1546
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 5.6E-37 1.9E-41 288.7 10.8 144 198-348 1-232 (248)
2 1kca_A Repressor protein CI; g 99.0 1.3E-09 4.5E-14 90.1 10.9 89 205-348 15-109 (109)
3 1umu_A UMUD'; induced mutagene 98.8 2.8E-08 9.7E-13 82.3 10.3 50 204-267 28-78 (116)
4 1jhf_A LEXA repressor; LEXA SO 98.6 2.4E-07 8.2E-12 83.1 10.5 56 204-274 111-167 (202)
5 3bdn_A Lambda repressor; repre 98.5 2.9E-07 1E-11 83.8 8.9 89 205-348 142-236 (236)
6 2hnf_A Repressor protein CI101 98.5 7E-07 2.4E-11 75.7 10.1 49 205-266 46-100 (133)
7 3k2z_A LEXA repressor; winged 98.1 1.4E-05 4.8E-10 71.6 10.8 49 204-266 110-159 (196)
8 2fjr_A Repressor protein CI; g 92.3 0.39 1.3E-05 41.5 7.6 42 218-274 120-161 (189)
9 1w4s_A Polybromo, polybromo 1 64.5 11 0.00036 32.9 5.8 102 214-340 6-107 (174)
10 3r8s_K 50S ribosomal protein L 35.6 1.5E+02 0.0052 24.7 7.9 26 306-331 81-106 (122)
11 3bbo_M Ribosomal protein L14; 35.4 1.9E+02 0.0065 24.0 8.5 27 305-332 80-106 (121)
12 3v2d_O 50S ribosomal protein L 31.4 1.8E+02 0.0062 24.2 7.8 26 305-331 80-105 (122)
13 2dgy_A MGC11102 protein; EIF-1 28.0 39 0.0013 27.7 3.0 21 219-241 56-76 (111)
14 1jt8_A EIF-1A, probable transl 28.0 26 0.00088 28.4 1.9 25 217-243 59-83 (102)
15 3i4o_A Translation initiation 22.4 40 0.0014 26.1 1.9 12 234-245 53-64 (79)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=5.6e-37 Score=288.68 Aligned_cols=144 Identities=38% Similarity=0.594 Sum_probs=119.7
Q ss_pred HHHhcceeEEeCCCCcccccCCCCEEEEEecccc------------CCCCccccEEEEecCCcccccccCCCceEEEEEE
Q 017822 198 FKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYF------------FKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIV 265 (365)
Q Consensus 198 i~~fl~~~~~V~g~SMePTL~~GD~VlV~K~s~~------------~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVI 265 (365)
++.|+++++.|+|+||+|||+.||+|+|+|.+|. .+++++||||+|+.|.+ ++..+||||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~-------~~~~~iKRVi 73 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAV 73 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEE
T ss_pred CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCC-------CCceEEEEEE
Confidence 3678999999999999999999999999999875 36899999999999864 4678999999
Q ss_pred eecCcEEEEeCC--EEEeCC-----------eeccccccc---------------------------------------C
Q 017822 266 ATAGDCVEVHGG--KLLVNG-----------VAQDEDFIL---------------------------------------E 293 (365)
Q Consensus 266 GlPGDtV~I~~g--~vyVNG-----------k~~~e~~~~---------------------------------------~ 293 (365)
|+|||+|+++++ .+|||| +.+++.+.. +
T Consensus 74 glpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e 153 (248)
T 1b12_A 74 GLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKE 153 (248)
T ss_dssp ECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEE
T ss_pred eeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHh
Confidence 999999999999 999999 555432110 0
Q ss_pred ------------cc----c--c------CCCCeeecCCeEEEecCCCCCCCCCCCcCcccCCCEeEEEEEEEcCCCCCC
Q 017822 294 ------------PL----A--Y------EMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVS 348 (365)
Q Consensus 294 ------------~~----~--~------~~~~~~VP~g~yFVlGDNr~nS~DSRy~GpVp~~~IiGkvi~~~wP~~r~g 348 (365)
+. . + ...+++||+||||||||||+||.||||||+||+++|+|||+++|||+++..
T Consensus 154 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~~ 232 (248)
T 1b12_A 154 TLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQE 232 (248)
T ss_dssp EETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC---
T ss_pred hhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCccc
Confidence 00 0 1 123579999999999999999999999999999999999999999988764
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.04 E-value=1.3e-09 Score=90.09 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=66.4
Q ss_pred eEEeCCCCcc------cccCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEEEeecCcEEEEeCCE
Q 017822 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGK 278 (365)
Q Consensus 205 ~~~V~g~SMe------PTL~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIGlPGDtV~I~~g~ 278 (365)
.+.|.|+||+ |+|+.||+|++++. .+++.||+|++..++ +..++||++..+
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~----~~~~~Gdivv~~~~~---------~~~~vKrl~~~~---------- 71 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLGG---------DEFTFKKLIRDS---------- 71 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT----SCCCTTCEEEEECST---------TCEEEEEEEEET----------
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecC----CcCCCCCEEEEEECC---------CeEEEEEEEEeC----------
Confidence 5689999999 99999999999885 469999999998742 367999998532
Q ss_pred EEeCCeecccccccCccccCCCCeeecCCeEEEecCCCCCCCCCCCcCcccCCCEeEEEEEEEcCCCCCC
Q 017822 279 LLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVS 348 (365)
Q Consensus 279 vyVNGk~~~e~~~~~~~~~~~~~~~VP~g~yFVlGDNr~nS~DSRy~GpVp~~~IiGkvi~~~wP~~r~g 348 (365)
|.+++.+||+.. .....- ..-+|+|+|+..+||+..|+
T Consensus 72 ----------------------------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 72 ----------------------------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp ----------------------------TEEEEECSSTTS--CCEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred ----------------------------CEEEEEECCCCC--CCEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 245566777521 111110 34679999999999987664
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=98.79 E-value=2.8e-08 Score=82.28 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=42.7
Q ss_pred eeEEeCCCCccc-ccCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEEEee
Q 017822 204 EPRSIPSASMNP-TLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT 267 (365)
Q Consensus 204 ~~~~V~g~SMeP-TL~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIGl 267 (365)
..+.|.|+||+| +|+.||+|++++. .+++.||+|++..+ +..++||+...
T Consensus 28 ~~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~gdivv~~~~----------~~~~vKr~~~~ 78 (116)
T 1umu_A 28 YFVKASGDSMIDGGISDGDLLIVDSA----ITASHGDIVIAAVD----------GEFTVKKLQLR 78 (116)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEETT----SCCCTTCEEEEEET----------TEEEEEEEECS
T ss_pred EEEEECCCCcCCCCCCCCCEEEEEcC----CCCCCCCEEEEEEC----------CEEEEEEEEeC
Confidence 367899999999 8999999999885 46899999999873 46789999853
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.58 E-value=2.4e-07 Score=83.06 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=45.6
Q ss_pred eeEEeCCCCcccc-cCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEEEeecCcEEEE
Q 017822 204 EPRSIPSASMNPT-LDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEV 274 (365)
Q Consensus 204 ~~~~V~g~SMePT-L~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIGlPGDtV~I 274 (365)
..+.|.|+||+|+ |+.||+|+|++. .+++.||||++.. .+...|||+. .+|+.+.+
T Consensus 111 ~~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~G~i~v~~~----------~~~~~vKrl~-~~~~~~~l 167 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIMDGDLLAVHKT----QDVRNGQVVVARI----------DDEVTVKRLK-KQGNKVEL 167 (202)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTSEEEEEE----------TTEEEEEEEE-EETTEEEE
T ss_pred EEEEECCCCCCCCCCCCCCEEEEecc----CCcCCCeEEEEEE----------CCEEEEEEEE-EeCCEEEE
Confidence 3568999999999 999999999875 4689999999986 2567999998 45554443
No 5
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.50 E-value=2.9e-07 Score=83.75 Aligned_cols=89 Identities=21% Similarity=0.330 Sum_probs=63.8
Q ss_pred eEEeCCCCcc------cccCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEEEeecCcEEEEeCCE
Q 017822 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGK 278 (365)
Q Consensus 205 ~~~V~g~SMe------PTL~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIGlPGDtV~I~~g~ 278 (365)
.+.|.|+||+ |+|..||+|+|++. .+++.||+|++... .+..+|||+.-.+|
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~----~~~~~g~ivv~~~~---------~~~~~vKrl~~~~~--------- 199 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFKKLIRGSG--------- 199 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCS----SCCCTTSEEEEEST---------TTCCCCEEEECCSS---------
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECCC----CCCCCCcEEEEEEC---------CCeEEEEEEEEcCC---------
Confidence 5679999999 99999999999875 47889999999873 25678999974332
Q ss_pred EEeCCeecccccccCccccCCCCeeecCCeEEEecCCCCCCCCCCCcCcccCCCEeEEEEEEEcCCCCCC
Q 017822 279 LLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVS 348 (365)
Q Consensus 279 vyVNGk~~~e~~~~~~~~~~~~~~~VP~g~yFVlGDNr~nS~DSRy~GpVp~~~IiGkvi~~~wP~~r~g 348 (365)
.+++..||+. +.....- ..-.|+|+|+..+||.+.|+
T Consensus 200 -----------------------------~~~L~s~N~~--y~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 200 -----------------------------QVFLQPLNPQ--YPMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp -----------------------------SCEEECSSTT--SCCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred -----------------------------cEEEEeCCCC--CCCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 3344566642 1111110 23469999999999987764
No 6
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.48 E-value=7e-07 Score=75.73 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=42.0
Q ss_pred eEEeCCCCcc------cccCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEEEe
Q 017822 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVA 266 (365)
Q Consensus 205 ~~~V~g~SMe------PTL~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIG 266 (365)
.+.|.|+||+ |+|+.||+|+|++. .+++.||+|++..++ +..++||++-
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~----~~~~~Gdivv~~~~~---------~~~~vKrl~~ 100 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE----QAVEPGDFCIARLGG---------DEFTFAKLIR 100 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT----SCCCTTSEEEEEETT---------TEEEEEEEEE
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccC----CCCCCCCEEEEEECC---------CEEEEEEEEE
Confidence 5679999999 99999999999985 578999999998632 4678999984
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.13 E-value=1.4e-05 Score=71.63 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=41.7
Q ss_pred eeEEeCCCCc-ccccCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEEEe
Q 017822 204 EPRSIPSASM-NPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVA 266 (365)
Q Consensus 204 ~~~~V~g~SM-ePTL~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIG 266 (365)
....|.|+|| +|++.+||+|+|++. ..++.||||++... +...|||+.-
T Consensus 110 f~l~v~GdSM~~p~i~~GD~viv~~~----~~~~~G~ivv~~~~----------~~~~vKr~~~ 159 (196)
T 3k2z_A 110 FLLKVKGESMIEEHICDGDLVLVRRQ----DWAQNGDIVAAMVD----------GEVTLAKFYQ 159 (196)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTCEEEEEET----------TEEEEEEEEE
T ss_pred EEEEEeCCCcCCCCCCCCCEEEEecc----CcCCCCCEEEEEEC----------CcEEEEEEEE
Confidence 3678999999 699999999999986 56889999999862 5789999963
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=92.26 E-value=0.39 Score=41.53 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEEEeecCcEEEE
Q 017822 218 DVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEV 274 (365)
Q Consensus 218 ~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIGlPGDtV~I 274 (365)
+.||+|+|++. .+..|+|+++.. .+...|||+.-.+|+.+.+
T Consensus 120 ~~Gd~v~Vd~~-----~~~~g~i~vv~~----------~g~~~vKrl~~~~~~~i~L 161 (189)
T 2fjr_A 120 SEGKIYFVDKQ-----ASLSDGLWLVDI----------KGAISIRELTKLPGRKLHV 161 (189)
T ss_dssp ETTEEEEEETT-----CCSCSEEEEEEE----------TTEEEEEEEEEETTTEEEE
T ss_pred eCCcEEEEEcC-----CccCCCEEEEEe----------CCeEEEEEEEECCCCEEEE
Confidence 78999999874 256699999976 3567899998666554443
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=64.46 E-value=11 Score=32.86 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=44.8
Q ss_pred ccccCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCceEEEEEEeecCcEEEEeCCEEEeCCeecccccccC
Q 017822 214 NPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILE 293 (365)
Q Consensus 214 ePTL~~GD~VlV~K~s~~~~~p~rGDIVVF~~P~~~~~~gy~~g~~~VKRVIGlPGDtV~I~~g~vyVNGk~~~e~~~~~ 293 (365)
+|-...+++.+...+.+.-..++.||.|.+..++. +...+|.||..+--+ .+|..+++++-.-.+-
T Consensus 6 ~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~-------~~~p~I~rI~~i~~~----~~g~~~v~v~WfyRPe--- 71 (174)
T 1w4s_A 6 SAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEA-------NLQPHIVCIERLWED----SAGEKWLYGCWFYRPN--- 71 (174)
T ss_dssp --------------------CCCTTCEEEECCSST-------TSCCEEEEEEEEEEC----TTCCEEEEEEEEECGG---
T ss_pred CccccCCCcEEeEEEEECCEEEECCCEEEEeCCCC-------CCCCEEEEEEEEEEc----CCCCEEEEEEEecCHH---
Confidence 46666667766666656556889999999987653 345688888754222 2444555543221110
Q ss_pred ccccCCCCeeecCCeEEEecCCCCCCCCCCCcCcccCCCEeEEEEEE
Q 017822 294 PLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFR 340 (365)
Q Consensus 294 ~~~~~~~~~~VP~g~yFVlGDNr~nS~DSRy~GpVp~~~IiGkvi~~ 340 (365)
..... .....-++++|... ++--++.+.|+||..-.
T Consensus 72 et~~~-~~~~~~~~EvF~S~----------~~d~~~~~~I~gkC~V~ 107 (174)
T 1w4s_A 72 ETFHL-ATRKFLEKEVFKSD----------YYNKVPVSKILGKCVVM 107 (174)
T ss_dssp GSCCC-TTCEEETTEEEEEE----------EEEEEEGGGEEEEEEEE
T ss_pred Hcccc-cCCcCCCCeeEEeC----------CcceecHHHeeeeEEEE
Confidence 00000 01111267777643 23357888899987543
No 10
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=35.59 E-value=1.5e+02 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=16.6
Q ss_pred CCeEEEecCCCCCCCCCCCcCcccCC
Q 017822 306 EGYVFVLGDNRNNSFDSHNWGPLPIE 331 (365)
Q Consensus 306 ~g~yFVlGDNr~nS~DSRy~GpVp~~ 331 (365)
+|...++.++..+-.-+|-||||++|
T Consensus 81 dNa~Vlin~~~g~p~GTrI~GpVarE 106 (122)
T 3r8s_K 81 GNACVLLNNNSEQPIGTRIFGPVTRE 106 (122)
T ss_dssp SCEEEEEETTTEEESCSCBCSCCCGG
T ss_pred CceEEEEeCCCCCEeeeEEEccccHH
Confidence 44555555552355677888998876
No 11
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.40 E-value=1.9e+02 Score=24.03 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=18.2
Q ss_pred cCCeEEEecCCCCCCCCCCCcCcccCCC
Q 017822 305 PEGYVFVLGDNRNNSFDSHNWGPLPIEN 332 (365)
Q Consensus 305 P~g~yFVlGDNr~nS~DSRy~GpVp~~~ 332 (365)
.+|...++.++ .+-.-+|-+|||++|.
T Consensus 80 ddNa~Vlin~~-g~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 80 DDNAAVIIDQE-GNPKGTRIFGAIAREL 106 (121)
T ss_dssp SSCEEEECCTT-SSCSSSCCCSCCCGGG
T ss_pred CCceEEEECCC-CCEeEeEEEcCcCHHH
Confidence 34455555555 3677889999999763
No 12
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=31.40 E-value=1.8e+02 Score=24.16 Aligned_cols=26 Identities=12% Similarity=0.342 Sum_probs=17.4
Q ss_pred cCCeEEEecCCCCCCCCCCCcCcccCC
Q 017822 305 PEGYVFVLGDNRNNSFDSHNWGPLPIE 331 (365)
Q Consensus 305 P~g~yFVlGDNr~nS~DSRy~GpVp~~ 331 (365)
.+|...++.++. +-.-+|-||||++|
T Consensus 80 ddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 80 DDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp SSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred CCcEEEEECCCC-CEeeeEEEccchHH
Confidence 344555555553 66788899999875
No 13
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.03 E-value=39 Score=27.74 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=9.2
Q ss_pred CCCEEEEEeccccCCCCccccEE
Q 017822 219 VGDRILAEKVSYFFKRPEVSDIV 241 (365)
Q Consensus 219 ~GD~VlV~K~s~~~~~p~rGDIV 241 (365)
.||+|+|....| ++..+|||+
T Consensus 56 ~GD~VlVe~~~y--d~~~kg~Iv 76 (111)
T 2dgy_A 56 RGDFLIVDPIEE--GEKVKAEIS 76 (111)
T ss_dssp SSCEEEEEECSS--CSSCCEEEE
T ss_pred CCCEEEEEeccc--CCcceEEEE
Confidence 355555554433 223444444
No 14
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=27.95 E-value=26 Score=28.43 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=16.2
Q ss_pred cCCCCEEEEEeccccCCCCccccEEEE
Q 017822 217 LDVGDRILAEKVSYFFKRPEVSDIVIF 243 (365)
Q Consensus 217 L~~GD~VlV~K~s~~~~~p~rGDIVVF 243 (365)
+..||+|+|....| ++..+|||+--
T Consensus 59 I~~GD~VlVe~~~y--d~~~Kg~Iv~r 83 (102)
T 1jt8_A 59 VREGDVVIVKPWEV--QGDQKCDIIWR 83 (102)
T ss_dssp CCSCEEEEECCBCC--TTSEEEEEEEE
T ss_pred ecCCCEEEEEeccC--CCCceEEEEEE
Confidence 45688888877665 34567776544
No 15
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=22.37 E-value=40 Score=26.06 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=7.2
Q ss_pred CCccccEEEEec
Q 017822 234 RPEVSDIVIFRA 245 (365)
Q Consensus 234 ~p~rGDIVVF~~ 245 (365)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 355677776654
Done!