BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017823
         (365 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 175 VMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVXXXXXXXXXXXXXXXAD 234
           V+ +++  FQ    INV+ +YAP +F+T+  S   +LL + IV                D
Sbjct: 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV-GVINLTFTVLAIMTVD 337

Query: 235 RLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWG 294
           + GRK L ++G + M +    +G+    Q       + G   L+ +L   Y A FA SWG
Sbjct: 338 KFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLF--YVAAFAMSWG 388

Query: 295 PLRWLVPSENFPLEIISAGQIITVAA 320
           P+ W++ SE FP  I      I VAA
Sbjct: 389 PVCWVLLSEIFPNAIRGKALAIAVAA 414


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,740,132
Number of Sequences: 62578
Number of extensions: 294843
Number of successful extensions: 723
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 1
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)