Query 017823
Match_columns 365
No_of_seqs 311 out of 1845
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 6.5E-36 2.2E-40 296.8 26.9 308 13-357 52-486 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.2E-26 4.2E-31 226.8 13.7 268 9-320 56-390 (451)
3 3o7q_A L-fucose-proton symport 99.9 4.4E-25 1.5E-29 215.1 24.4 267 8-318 53-388 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 5E-24 1.7E-28 211.3 20.2 276 9-320 47-430 (491)
5 2gfp_A EMRD, multidrug resista 99.9 2.1E-24 7.2E-29 206.7 8.8 269 8-320 27-334 (375)
6 2xut_A Proton/peptide symporte 99.8 1.5E-19 5.2E-24 180.6 10.9 128 11-168 49-181 (524)
7 2cfq_A Lactose permease; trans 99.8 6.3E-19 2.1E-23 171.9 9.8 264 8-317 35-353 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.0 1.2E-09 4.2E-14 105.9 11.6 135 174-320 29-163 (451)
9 2gfp_A EMRD, multidrug resista 98.7 9.8E-09 3.3E-13 97.4 7.0 118 188-320 15-132 (375)
10 4gc0_A D-xylose-proton symport 98.7 4.2E-08 1.4E-12 96.4 11.3 107 213-320 59-170 (491)
11 3o7q_A L-fucose-proton symport 98.7 4.2E-08 1.4E-12 94.7 10.5 121 188-320 41-161 (438)
12 2cfq_A Lactose permease; trans 98.7 9.5E-09 3.3E-13 99.6 5.0 115 15-156 258-373 (417)
13 2xut_A Proton/peptide symporte 98.6 1.8E-07 6.1E-12 92.8 12.5 115 188-316 27-149 (524)
14 4aps_A DI-OR tripeptide H+ sym 98.6 2.5E-07 8.4E-12 90.9 12.5 118 188-320 28-154 (491)
15 2g9p_A Antimicrobial peptide l 33.5 22 0.00074 18.8 1.5 14 35-48 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=6.5e-36 Score=296.76 Aligned_cols=308 Identities=27% Similarity=0.457 Sum_probs=250.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH------------------HhhhHHHHHH
Q 017823 13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG------------------AAFNIYMLIF 74 (365)
Q Consensus 13 ~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~------------------~a~~~~~~~~ 74 (365)
.++++.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++++ +++|++++++
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 3456789999999999999999999999999999999999999999999998 4789999999
Q ss_pred HHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 017823 75 GRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYG 154 (365)
Q Consensus 75 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 154 (365)
+|+++|++.|...+ ..+.+++|+.|+++|++..+..+.+...|.++++.++..
T Consensus 132 ~R~l~G~g~G~~~~---------------------------~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 132 YRIIGGIGVGLASM---------------------------LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHHHH---------------------------HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 99999999999999 999999999999999999999999999999999998877
Q ss_pred hcccc-----CCcchHHHH-------------------------------------------------------------
Q 017823 155 TQKIK-----VGWGWRISL------------------------------------------------------------- 168 (365)
Q Consensus 155 ~~~~~-----~~~gwr~~f------------------------------------------------------------- 168 (365)
..... ..++||..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (491)
T 4gc0_A 185 IARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGR 264 (491)
T ss_dssp HHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhh
Confidence 65432 235677776
Q ss_pred --------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcch
Q 017823 169 --------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKV 240 (365)
Q Consensus 169 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 240 (365)
..+++.........++++.+.+....|.|.+.+..+.+..... ......++...++.++++++.||+|||+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~ 343 (491)
T 4gc0_A 265 KTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKP 343 (491)
T ss_dssp HHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHH
T ss_pred hhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 0112345556666777778888888999999999888887777 7778888999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823 241 LFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA 320 (365)
Q Consensus 241 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 320 (365)
.+..+...+.++.+.++..... ....+..++...++..+++.+++|+.+.+.+|++|++.|+++.|+.++.
T Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 344 LQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 9999988888888777665321 1223445555666667777888999999999999999999999998776
Q ss_pred ----------------------------HHHHH-------HHHHHHhhcccCCCCChHHHHHHHccCCccee
Q 017823 321 ----------------------------GVFFF-------LTTFMHFFLPETKNVPIELMDKCWREHWFWRK 357 (365)
Q Consensus 321 ----------------------------~~f~~-------~~~~~~~~~~et~~~~~~~~~~~~~~~~~~~~ 357 (365)
..|++ ..++.++++||||+|++||+|+.++++.+++|
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence 01111 33456678999999999999998876655444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.2e-26 Score=226.81 Aligned_cols=268 Identities=14% Similarity=0.021 Sum_probs=211.7
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHhhcchh
Q 017823 9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA----AFNIYMLIFGRVLLGVGIG 84 (365)
Q Consensus 9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~----a~~~~~~~~~r~l~G~~~g 84 (365)
+++ .|..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.++ ++|++.++++|++.|++.+
T Consensus 56 ~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 134 (451)
T 1pw4_A 56 EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 134 (451)
T ss_dssp SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhh
Confidence 445 77999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcc-
Q 017823 85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWG- 163 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~g- 163 (365)
...+ ...+++.|++|+++|++++++.+.+..+|.++++.++..+. +..+
T Consensus 135 ~~~~---------------------------~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~ 184 (451)
T 1pw4_A 135 MGWP---------------------------PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM---AWFND 184 (451)
T ss_dssp HTHH---------------------------HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH---HHTCC
T ss_pred hccc---------------------------hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcc
Confidence 9999 88999999999999999999999999999999999998765 3345
Q ss_pred hHHHH----------------------Hh--------------------------------H----HHHHHHHHHHHHHh
Q 017823 164 WRISL----------------------KY--------------------------------R----LQFVMAILIPFFQH 185 (365)
Q Consensus 164 wr~~f----------------------~~--------------------------------~----~~~~~~~~~~~~~~ 185 (365)
||+.| +. + ++.++...+..+..
T Consensus 185 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (451)
T 1pw4_A 185 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 264 (451)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHH
Confidence 88776 00 0 12233333333333
Q ss_pred cccccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh--CcchHHHHhHHHHH-HHHHHHHHHHh
Q 017823 186 VTRINVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRL--GRKVLFLVGGIQML-VSRVMIGSIMA 261 (365)
Q Consensus 186 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~l~~~~~~~~-i~~~~~~~~~~ 261 (365)
.........+.|.++++ .|.++.+.+ .......++.+++.++.+++.||+ |||+.+..+..+.. ++.+.+...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 341 (451)
T 1pw4_A 265 YLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-- 341 (451)
T ss_dssp HHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--
Confidence 44556677788888876 799999888 888999999999999999999999 99988877766555 443333221
Q ss_pred hhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823 262 DQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA 320 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 320 (365)
+....+...+...+.+.+.... .+....+..|.+|++.|+++.|+.+..
T Consensus 342 ---------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (451)
T 1pw4_A 342 ---------PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLF 390 (451)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred ---------cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence 1112334444444455544333 333456678999999999999988765
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=4.4e-25 Score=215.13 Aligned_cols=267 Identities=12% Similarity=0.077 Sum_probs=210.8
Q ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHhhcchh
Q 017823 8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALR---GAAFNIYMLIFGRVLLGVGIG 84 (365)
Q Consensus 8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~a~~~~~~~~~r~l~G~~~g 84 (365)
.+++|.|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++. +++++++.++++|++.|++.+
T Consensus 53 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 132 (438)
T 3o7q_A 53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG 132 (438)
T ss_dssp HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHH
Confidence 34567779999999999999999999999999999999999999999999999999 888999999999999999999
Q ss_pred hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-cccCC--
Q 017823 85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ-KIKVG-- 161 (365)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~~~-- 161 (365)
...+ ....++.|++|+|+|++++++.+.+..+|..+++.++..+. +....
T Consensus 133 ~~~~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 133 CLET---------------------------AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHH---------------------------HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred Hhhh---------------------------hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999 89999999999999999999999999999999999998887 43321
Q ss_pred --------------------cchHHHH-----------------------------------------HhHHHHHHHHHH
Q 017823 162 --------------------WGWRISL-----------------------------------------KYRLQFVMAILI 180 (365)
Q Consensus 162 --------------------~gwr~~f-----------------------------------------~~~~~~~~~~~~ 180 (365)
.+||+.+ ..+++.++....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVL 265 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHH
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHH
Confidence 0188877 001122233333
Q ss_pred HHHHhcccccchhhcHHHH-HHHc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHH
Q 017823 181 PFFQHVTRINVISFYAPVL-FRTI-KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGS 258 (365)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~ 258 (365)
..+...........+.|.+ +++. |.++.+.+ .......++.+++.++.++++||+|||+.+..+..+..++.+.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 344 (438)
T 3o7q_A 266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF 344 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3333334455666788888 7665 99999998 8888899999999999999999999999999888877777666554
Q ss_pred HHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHH
Q 017823 259 IMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITV 318 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 318 (365)
. +..+ ..+...+.+++.+.. .|..+.+..|.+|++ |+++.++..
T Consensus 345 ~-------------~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 345 A-------------GGHV-GLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp C-------------CHHH-HHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred c-------------CCcH-HHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH
Confidence 3 1122 233334444555444 345566668999977 787777766
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.92 E-value=5e-24 Score=211.28 Aligned_cols=276 Identities=12% Similarity=0.045 Sum_probs=203.3
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823 9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN 87 (365)
Q Consensus 9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~ 87 (365)
+++|.|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++.++++|++.++++|++.|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 4577789999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCC--cchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchH
Q 017823 88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKN--RGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWR 165 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr 165 (365)
+ ....++.|++|+++ |+.+.+..+.+.++|..+++.++..+.+ ..|||
T Consensus 127 ~---------------------------~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~g~~ 176 (491)
T 4aps_A 127 P---------------------------NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE---AAGYH 176 (491)
T ss_dssp H---------------------------HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCHH
T ss_pred c---------------------------hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh---hhhHH
Confidence 9 89999999999998 6778888999999999999999998873 35799
Q ss_pred HHH------------------H-----------------hHHH-------------------------------------
Q 017823 166 ISL------------------K-----------------YRLQ------------------------------------- 173 (365)
Q Consensus 166 ~~f------------------~-----------------~~~~------------------------------------- 173 (365)
+.| + ..++
T Consensus 177 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (491)
T 4aps_A 177 VAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIV 256 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHH
Confidence 988 0 0000
Q ss_pred -----------------------H----HHHHHHHHHHhcccccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHH
Q 017823 174 -----------------------F----VMAILIPFFQHVTRINVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTIS 225 (365)
Q Consensus 174 -----------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 225 (365)
. ....................+.|.+.++ .+.+..... .......+...++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 335 (491)
T 4aps_A 257 AIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLY 335 (491)
T ss_dssp HHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHH
Confidence 0 1111111222222334445566667654 566655566 6777888889999
Q ss_pred HHHHHHHHhhhCcchHHH-----HhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccc
Q 017823 226 TSLSMILADRLGRKVLFL-----VGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLV 300 (365)
Q Consensus 226 ~~~~g~l~dr~grr~~l~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (365)
.++.+++.||++||+... .+..+..++.+.+....... .+ ..+...+.......+.+.+... ..+..+.+
T Consensus 336 ~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~ 410 (491)
T 4aps_A 336 TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEML-ISPVGLSV 410 (491)
T ss_dssp HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHT-TTTHHHHH
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 999999999999986544 55556666655554432111 00 0111233444445555555443 34455677
Q ss_pred cccCCChhhhhHHHHHHHHH
Q 017823 301 PSENFPLEIISAGQIITVAA 320 (365)
Q Consensus 301 ~~e~~p~~~r~~~~~~~~~~ 320 (365)
..|.+|++.|+++.|+.+..
T Consensus 411 ~~~~~p~~~~g~~~g~~~~~ 430 (491)
T 4aps_A 411 TTKLAPKAFNSQMMSMWFLS 430 (491)
T ss_dssp HHHHTTTTCSSSSTHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 89999999999999988777
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=2.1e-24 Score=206.67 Aligned_cols=269 Identities=15% Similarity=0.157 Sum_probs=203.9
Q ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823 8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN 87 (365)
Q Consensus 8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~ 87 (365)
.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++.++++|++.++++|++.|++.+...
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 106 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGG 106 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 35677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823 88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS 167 (365)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~ 167 (365)
+ ....++.|+.|+|+|+++++..+.+..+|..+++.++..+. +..+||..
T Consensus 107 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~ 156 (375)
T 2gfp_A 107 V---------------------------MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD---TMWNWRAC 156 (375)
T ss_dssp H---------------------------HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS---CHHHHHHH
T ss_pred h---------------------------hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HhccHHHH
Confidence 9 88999999999999999999999999999999999999887 34579988
Q ss_pred H-------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHH-cCCCcch
Q 017823 168 L-------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRT-IKLSEST 209 (365)
Q Consensus 168 f-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 209 (365)
+ ..+++.........+...........+.|.++++ .|.++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT 236 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 8 0122223333333333334455556667777655 7888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHH-HHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHh
Q 017823 210 SLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQ-MLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAG 288 (365)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (365)
.+ .......++.+++..+.+++.||.+++ ...+... ...+...+..... ..++.+...+...+.+++
T Consensus 237 ~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 237 VS-ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp HH-HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHH
Confidence 88 888888899999999999999998873 2222222 2222221111100 012234444455555565
Q ss_pred hccccccccccccccCCChhhhhHHHHHHHHH
Q 017823 289 FAFSWGPLRWLVPSENFPLEIISAGQIITVAA 320 (365)
Q Consensus 289 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 320 (365)
.+.. .+....+..|..| ++|+++.|+.+..
T Consensus 305 ~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 305 AGML-FPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp HHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred HHHh-hHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 5544 3444666789998 8999999999877
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.79 E-value=1.5e-19 Score=180.56 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=118.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhcchhhhhh
Q 017823 11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVRSTAFLAGSALRGAAF-NIYMLIFGRVLLGVGIGFANQ 88 (365)
Q Consensus 11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~a~-~~~~~~~~r~l~G~~~g~~~~ 88 (365)
+++|+.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.++.++++ +++.++++|++.|++.+...+
T Consensus 49 ~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 49 EELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 338899999999999999999999999999999 999999999999999999999998 999999999999999999999
Q ss_pred hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH---HHHHHHHHHHHHHHHhhhhccccCCcchH
Q 017823 89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG---FQVCVATAVLSANLLNYGTQKIKVGWGWR 165 (365)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~i~~~~~~~~~~~~~~~gwr 165 (365)
...+++.|++|+++|++..+. .+.+.++|..+++.+++.+.+ ..+||
T Consensus 129 ---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~ 178 (524)
T 2xut_A 129 ---------------------------LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---NFGAA 178 (524)
T ss_dssp ---------------------------HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---TSCHH
T ss_pred ---------------------------hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHH
Confidence 889999999999999877666 888999999999999888873 35799
Q ss_pred HHH
Q 017823 166 ISL 168 (365)
Q Consensus 166 ~~f 168 (365)
..|
T Consensus 179 ~~f 181 (524)
T 2xut_A 179 VAF 181 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.77 E-value=6.3e-19 Score=171.95 Aligned_cols=264 Identities=9% Similarity=0.029 Sum_probs=160.4
Q ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHhhhH-HHHHHHHHHhhcch
Q 017823 8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS---ALRGAAFNI-YMLIFGRVLLGVGI 83 (365)
Q Consensus 8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~---~~~~~a~~~-~~~~~~r~l~G~~~ 83 (365)
++++|+|+.+.|++.+.+.++..++++++|+++||+|||+++..+..+..++. ....+++.. ..+..++.+.|++.
T Consensus 35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T 2cfq_A 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999998887765432 112233222 12445677777766
Q ss_pred hhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCC--CCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC
Q 017823 84 GFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPP--KNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG 161 (365)
Q Consensus 84 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 161 (365)
+...+ .......++.++ ++|+...+..+.+..+|..+++.++..+.+
T Consensus 115 g~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---- 163 (417)
T 2cfq_A 115 GFCFN---------------------------AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---- 163 (417)
T ss_dssp THHHH---------------------------TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----
T ss_pred HHHHh---------------------------hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 66554 333333334332 355666677666677777777777766542
Q ss_pred cchHHHH--------------------H-h------------------------HHHHHHHHHHHHHHhcccccchhhcH
Q 017823 162 WGWRISL--------------------K-Y------------------------RLQFVMAILIPFFQHVTRINVISFYA 196 (365)
Q Consensus 162 ~gwr~~f--------------------~-~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (365)
.+||..| + . +++..+......+.....+.....+.
T Consensus 164 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2cfq_A 164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF 243 (417)
T ss_dssp HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 2456555 0 0 01111122221111111222233345
Q ss_pred HHHHHHc-CC---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCch
Q 017823 197 PVLFRTI-KL---SESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI 272 (365)
Q Consensus 197 ~~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 272 (365)
|.++.+. +. +....+ ....+..+..+++.++.++++||+|||+.+..+..+..+..+.+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------------- 309 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------- 309 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 6666442 21 233334 55667777888999999999999999999887777666654444321
Q ss_pred hhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHH
Q 017823 273 GYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIIT 317 (365)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 317 (365)
+..+..++...+...+... ..+..+.+.+|.+|++.|++++++.
T Consensus 310 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 310 TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 1122233333333333222 2223356779999999999998875
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.02 E-value=1.2e-09 Score=105.86 Aligned_cols=135 Identities=12% Similarity=0.040 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHH
Q 017823 174 FVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSR 253 (365)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~ 253 (365)
.+.......+...........+.|.+.++. .++.+.+ ...+...++..++.++.|+++||+|||+.+..+.++..++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 333333333433444455666778888888 8999998 89999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823 254 VMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA 320 (365)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 320 (365)
+...+.... .++.+..++...+.+++.+... +....+.+|.+|+++|+++.++....
T Consensus 107 ~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 107 LFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp HHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhhhhc---------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHH
Confidence 888762100 0223344555555566555443 34456679999999999999988776
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.75 E-value=9.8e-09 Score=97.39 Aligned_cols=118 Identities=11% Similarity=0.098 Sum_probs=91.7
Q ss_pred cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH 267 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 267 (365)
.........|.+.++.|.++.+.+ ...+...+...++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 344445567777888999999998 89999999999999999999999999999999999888888877765
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823 268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA 320 (365)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 320 (365)
++.+...+...+.+.+.+. ..+....+..|.+|+++|+++.++.+..
T Consensus 86 -----~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (375)
T 2gfp_A 86 -----SSLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMG 132 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 2344445555555555443 3344456678999999999998887776
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.74 E-value=4.2e-08 Score=96.39 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCC-----CCCCchhhHHHHHHHHHHHHH
Q 017823 213 MSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGD-----HGGFSIGYAYLILVLICVYKA 287 (365)
Q Consensus 213 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 287 (365)
+..+...++..+|+++.|+++||+|||+.+.++.++..++.++.++........ ......++.+..++.-++.++
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 566677888999999999999999999999999999988888777531000000 000012334555666666666
Q ss_pred hhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823 288 GFAFSWGPLRWLVPSENFPLEIISAGQIITVAA 320 (365)
Q Consensus 288 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 320 (365)
+.+.. .+....+.+|..|++.|++..++....
T Consensus 139 g~G~~-~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 139 GVGLA-SMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHH-HHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 65543 344567779999999999988876655
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.72 E-value=4.2e-08 Score=94.67 Aligned_cols=121 Identities=13% Similarity=-0.038 Sum_probs=95.1
Q ss_pred cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH 267 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 267 (365)
.........|.+.++.|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.++......
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------ 113 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------ 113 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc------
Confidence 345566678888899999999999 9999999999999999999999999999999999999888887743210
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823 268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA 320 (365)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 320 (365)
.++.+..++...+.+.+.+....+ ...+.+|.+|+++|+++.++.+..
T Consensus 114 ----~~~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 114 ----IMNYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHHHHHHHHHHH
Confidence 123445556666666666544443 356679999999999998888777
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.69 E-value=9.5e-09 Score=99.61 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=97.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 017823 15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLF 94 (365)
Q Consensus 15 ~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 94 (365)
....+...+...++..++.++.|++.||+|||+.+..+..+.+++.+..++.++.+.+++..++.+++.+...+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 331 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV------ 331 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH------
Confidence 45667888888888899999999999999999999988888888877777778888888888888887766666
Q ss_pred hhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH-HHHHHHHHHHHHHHHhhhhc
Q 017823 95 YFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG-FQVCVATAVLSANLLNYGTQ 156 (365)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~ 156 (365)
....++.|..|++.|+...+. .+....+|..++|.+++.+.
T Consensus 332 ---------------------~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 332 ---------------------GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp ---------------------HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred ---------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 566788999999999999888 47888899999999988776
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.64 E-value=1.8e-07 Score=92.82 Aligned_cols=115 Identities=12% Similarity=-0.034 Sum_probs=84.7
Q ss_pred cccchhhcHHHHH-HHcC------CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh-CcchHHHHhHHHHHHHHHHHHHH
Q 017823 188 RINVISFYAPVLF-RTIK------LSESTSLLMSAIVTGSLGTISTSLSMILADRL-GRKVLFLVGGIQMLVSRVMIGSI 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~l~~~~~~~~i~~~~~~~~ 259 (365)
..+....+.|.++ ++.| .++.+.+ ...+...++..++.++.|+++||+ |||+.+..+.++..++.++....
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666665 5678 8999998 899999999999999999999999 99999999988888887776653
Q ss_pred HhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823 260 MADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQII 316 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 316 (365)
+ .+.+...+...+.+++.+.. .+....+.+|.+|+++|+++.+.
T Consensus 106 -----------~-~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 106 -----------E-HSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp -----------S-SCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHH
T ss_pred -----------c-ccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHH
Confidence 1 12344455555556665543 34445667999999999765554
No 14
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.61 E-value=2.5e-07 Score=90.93 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=85.6
Q ss_pred cccchhhcHHHHH-HH-----cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-hCcchHHHHhHHHHHHHHHHHHHHH
Q 017823 188 RINVISFYAPVLF-RT-----IKLSESTSLLMSAIVTGSLGTISTSLSMILADR-LGRKVLFLVGGIQMLVSRVMIGSIM 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~i~~~~~~~~~ 260 (365)
.++....+.+.++ ++ .|.+..+.+ ...+...++..++.++.|+++|| +|||+.+..+..+..++.+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~- 105 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-
Confidence 4444545566666 44 799999999 89999999999999999999999 899999999988888887776543
Q ss_pred hhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhh--hhHHHHHHHHH
Q 017823 261 ADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEI--ISAGQIITVAA 320 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~ 320 (365)
++.+...+...+.+.+.+... +....+.+|.+|+++ |+++.++.+..
T Consensus 106 ------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 154 (491)
T 4aps_A 106 ------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFG 154 (491)
T ss_dssp ------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHH
Confidence 123344445555555554433 444566789999988 66666654444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.52 E-value=22 Score=18.82 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=11.2
Q ss_pred HHHHHHhhhhhhHH
Q 017823 35 FASSVTRAFGRKAS 48 (365)
Q Consensus 35 ~~g~l~dr~Grk~~ 48 (365)
..|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788899999875
Done!