BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017825
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 78
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 50/65 (76%)
Query: 177 EEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNT 236
EEP+YVNAKQYH IL+RRQ RAK E E K+ K R+ YLHESRH HAM R RG GGRF +
Sbjct: 2 EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP 61
Query: 237 KKLDS 241
K+ DS
Sbjct: 62 KEKDS 66
>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 64
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 177 EEPVYVNAKQYHGILRRRQLRAKAELERKLI-KVRKPYLHESRHLHAMRRARGCGGRFV 234
E P+YVNAKQ+H IL+RR R K E + +L K RKPYLHESRH HAMRR RG GGRF+
Sbjct: 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 145 GGAV-------PAYGQQALVHPQSMGVHSARMALPLEMAEEPVYVNAKQYH-GILRRRQL 196
GGAV P Y L+ P MG+ R A+ E+ + + AK Y G +RR +
Sbjct: 94 GGAVITASHNPPEYNGIKLLEPNGMGLKKEREAIVEELFFKEDFDRAKWYEIGEVRREDI 153
Query: 197 ------RAKAELERKLIKVRKPYL 214
K++++ + IK RKP++
Sbjct: 154 IKPYIEAIKSKVDVEAIKKRKPFV 177
>pdb|1RHD|A Chain A, Structure Of Bovine Liver Rhodanese. I. Structure
Determination At 2.5 Angstroms Resolution And A
Comparison Of The Conformation And Sequence Of Its Two
Domains
Length = 293
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 31 WW--RGVGHDSTSRAMLQGGIGN--------ISSPREPINGVLVAKTSKSQVNSGMDGGA 80
WW R GH + S +L GG N S P P + A ++S + +
Sbjct: 112 WWMFRVFGHRTVS--VLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLE 169
Query: 81 DATKEMLMSVASQADGKFGGQQPSQHSVSL--------MHPQFSEYLTQ 121
+ + V S+A G++ G QP +V L ++ F ++LT+
Sbjct: 170 NLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMDFLTE 218
>pdb|1DP2|A Chain A, Crystal Structure Of The Complex Between Rhodanese And
Lipoate
Length = 293
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 31 WW--RGVGHDSTSRAMLQGGIGN--------ISSPREPINGVLVAKTSKSQVNSGMDGGA 80
WW R GH + S +L GG N S P P + A ++S + +
Sbjct: 112 WWMFRVFGHRTVS--VLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLE 169
Query: 81 DATKEMLMSVASQADGKFGGQQPSQHSVSL 110
+ + V S+A G++ G QP +V L
Sbjct: 170 NLESKRFQLVDSRAQGRYLGTQPEPDAVGL 199
>pdb|1ORB|A Chain A, Active Site Structural Features For Chemically Modified
Forms Of Rhodanese
Length = 296
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 31 WW--RGVGHDSTSRAMLQGGIGN--------ISSPREPINGVLVAKTSKSQVNSGMDGGA 80
WW R GH + S +L GG N S P P + A ++S + +
Sbjct: 112 WWMFRVFGHRTVS--VLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLE 169
Query: 81 DATKEMLMSVASQADGKFGGQQPSQHSVSL 110
+ + V S+A G++ G QP +V L
Sbjct: 170 NLESKRFQLVDSRAQGRYLGTQPEPDAVGL 199
>pdb|1RHS|A Chain A, Sulfur-Substituted Rhodanese
Length = 296
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 31 WW--RGVGHDSTSRAMLQGGIGN--------ISSPREPINGVLVAKTSKSQVNSGMDGGA 80
WW R GH + S +L GG N S P P + A ++S + +
Sbjct: 112 WWMFRVFGHRTVS--VLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLE 169
Query: 81 DATKEMLMSVASQADGKFGGQQPSQHSVSL 110
+ + V S+A G++ G QP +V L
Sbjct: 170 NLESKRFQLVDSRAQGRYLGTQPEPDAVGL 199
>pdb|1BOH|A Chain A, Sulfur-Substituted Rhodanese (Orthorhombic Form)
pdb|1BOI|A Chain A, N-Terminally Truncated Rhodanese
pdb|2ORA|A Chain A, Rhodanese (Thiosulfate: Cyanide Sulfurtransferase)
Length = 296
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 31 WW--RGVGHDSTSRAMLQGGIGN--------ISSPREPINGVLVAKTSKSQVNSGMDGGA 80
WW R GH + S +L GG N S P P + A ++S + +
Sbjct: 112 WWMFRVFGHRTVS--VLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLE 169
Query: 81 DATKEMLMSVASQADGKFGGQQPSQHSVSL 110
+ + V S+A G++ G QP +V L
Sbjct: 170 NLESKRFQLVDSRAQGRYLGTQPEPDAVGL 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,046,985
Number of Sequences: 62578
Number of extensions: 452959
Number of successful extensions: 740
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 10
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)