Query 017825
Match_columns 365
No_of_seqs 150 out of 210
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 05:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 4.9E-36 1.7E-40 231.3 5.1 62 177-238 2-64 (64)
2 2l1q_A Liver-expressed antimic 13.3 80 0.0027 22.6 1.5 18 29-51 2-19 (40)
3 3hde_A Lysozyme; antimicrobial 7.8 1.9E+02 0.0066 24.7 2.3 25 178-202 137-161 (165)
4 1xju_A Lysozyme; secreted inac 7.4 2.1E+02 0.0071 24.3 2.3 26 179-204 128-153 (163)
5 1b9w_A Protein (merozoite surf 7.3 80 0.0027 26.1 -0.4 20 131-150 69-89 (95)
6 1qfq_B N36, 36-MER N-terminal 7.0 2.3E+02 0.0078 19.5 1.8 15 191-205 4-18 (35)
7 2anv_A Lysozyme; direct method 6.8 1.5E+02 0.005 24.6 1.0 21 179-200 123-143 (146)
8 1xjt_A Lysozyme; open conforma 5.9 2.7E+02 0.0093 24.4 2.3 27 178-204 155-181 (191)
9 2k2w_A Recombination and DNA r 4.9 2.2E+02 0.0074 24.2 0.9 12 178-189 18-29 (118)
10 3gxv_A Replicative DNA helicas 4.7 4.1E+02 0.014 21.2 2.4 24 178-201 88-111 (123)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=4.9e-36 Score=231.30 Aligned_cols=62 Identities=63% Similarity=0.987 Sum_probs=58.4
Q ss_pred CCceeecchhhHHHHHHHHHHHHHHHhhhhh-hcCCCccccchhhHhhhcCCCCCCccccccc
Q 017825 177 EEPVYVNAKQYHGILRRRQLRAKAELERKLI-KVRKPYLHESRHLHAMRRARGCGGRFVNTKK 238 (365)
Q Consensus 177 eePvyVNaKQY~rIlrRR~~Rak~e~~~kl~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~kk 238 (365)
|+|||||||||++|||||++|||+|++++|+ +.||||||||||+|||+|+||+||||||+++
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 7999999999999999999999999999985 8899999999999999999999999998874
No 2
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=13.31 E-value=80 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.769 Sum_probs=14.2
Q ss_pred CccccCCCCCCcccccccCCCCC
Q 017825 29 QPWWRGVGHDSTSRAMLQGGIGN 51 (365)
Q Consensus 29 ~PWW~~~G~~~~~~a~~g~~~s~ 51 (365)
-|.||++|.-| +|++|-+
T Consensus 2 TP~WR~vs~kP-----~GA~Crd 19 (40)
T 2l1q_A 2 TPFWRGVSLRP-----IGASCRD 19 (40)
T ss_dssp CCTTSSCSSBC-----TTSBCSS
T ss_pred cchhhhhcCCc-----cchhhcc
Confidence 48999999986 6777665
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=7.82 E-value=1.9e+02 Score=24.67 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=19.8
Q ss_pred CceeecchhhHHHHHHHHHHHHHHH
Q 017825 178 EPVYVNAKQYHGILRRRQLRAKAEL 202 (365)
Q Consensus 178 ePvyVNaKQY~rIlrRR~~Rak~e~ 202 (365)
.-+|++-|-..++.+||++..++=+
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHH
Confidence 3567778899999999998876544
No 4
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.42 E-value=2.1e+02 Score=24.32 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=20.5
Q ss_pred ceeecchhhHHHHHHHHHHHHHHHhh
Q 017825 179 PVYVNAKQYHGILRRRQLRAKAELER 204 (365)
Q Consensus 179 PvyVNaKQY~rIlrRR~~Rak~e~~~ 204 (365)
-+|++-|...++.+||++.+.+=+..
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 46777788999999999988766543
No 5
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=7.34 E-value=80 Score=26.09 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.6
Q ss_pred ccccc-cCCCCCCccCCcccc
Q 017825 131 SIACA-SYPYSDSYYGGAVPA 150 (365)
Q Consensus 131 s~a~~-~ypy~Dpyygg~~aa 150 (365)
-|+|. ..||..|||.|+|-+
T Consensus 69 kIvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 69 EIVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp CEEEECCSTTEEEEGGGTEEE
T ss_pred cEEEECCCCCCCcceeeEEec
Confidence 46777 889999999999864
No 6
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=6.97 E-value=2.3e+02 Score=19.50 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhh
Q 017825 191 LRRRQLRAKAELERK 205 (365)
Q Consensus 191 lrRR~~Rak~e~~~k 205 (365)
-|||++||...++=|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 478888876555544
No 7
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=6.78 E-value=1.5e+02 Score=24.59 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=16.7
Q ss_pred ceeecchhhHHHHHHHHHHHHH
Q 017825 179 PVYVNAKQYHGILRRRQLRAKA 200 (365)
Q Consensus 179 PvyVNaKQY~rIlrRR~~Rak~ 200 (365)
-+|++-| ..++.+||++.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566778 89999999988764
No 8
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=5.90 E-value=2.7e+02 Score=24.38 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=20.9
Q ss_pred CceeecchhhHHHHHHHHHHHHHHHhh
Q 017825 178 EPVYVNAKQYHGILRRRQLRAKAELER 204 (365)
Q Consensus 178 ePvyVNaKQY~rIlrRR~~Rak~e~~~ 204 (365)
.-+|++-|...++.+||++.+.+=+..
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 346777788999999999988766543
No 9
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=4.91 E-value=2.2e+02 Score=24.16 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=9.9
Q ss_pred CceeecchhhHH
Q 017825 178 EPVYVNAKQYHG 189 (365)
Q Consensus 178 ePvyVNaKQY~r 189 (365)
.=||.|+|||.+
T Consensus 18 tFvFLn~KQ~kk 29 (118)
T 2k2w_A 18 VFLFLNAKQYKK 29 (118)
T ss_dssp EEEESCSSTHHH
T ss_pred EEEEeCHHHHHH
Confidence 458999999975
No 10
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=4.71 E-value=4.1e+02 Score=21.25 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=19.6
Q ss_pred CceeecchhhHHHHHHHHHHHHHH
Q 017825 178 EPVYVNAKQYHGILRRRQLRAKAE 201 (365)
Q Consensus 178 ePvyVNaKQY~rIlrRR~~Rak~e 201 (365)
-|--.|.+.|-+|+|.+..|.++-
T Consensus 88 ~ps~ani~~Ya~iV~e~s~~R~li 111 (123)
T 3gxv_A 88 ASPIDNIEAYVEEIKNASIKRKLF 111 (123)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 556679999999999888887754
Done!