Query 017825
Match_columns 365
No_of_seqs 150 out of 210
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 05:33:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017825.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017825hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ob1c2 g.3.11.4 (C:46-96) Mer 7.0 59 0.0043 22.5 0.5 23 129-151 26-49 (51)
2 d1v8fa_ c.26.1.4 (A:) Pantothe 6.4 57 0.0042 28.3 0.3 18 179-196 49-75 (276)
3 d1xjua_ d.2.1.3 (A:) Endolysin 5.8 1.5E+02 0.011 22.4 2.5 27 180-206 129-155 (158)
4 d1ihoa_ c.26.1.4 (A:) Pantothe 5.0 80 0.0058 27.4 0.3 10 179-188 54-63 (282)
5 d2a84a1 c.26.1.4 (A:3-288) Pan 4.5 77 0.0056 27.5 -0.1 11 179-189 63-73 (286)
6 d1y7ua1 d.38.1.1 (A:8-171) Acy 4.3 3.4E+02 0.025 20.7 3.7 24 184-207 135-158 (164)
7 d2huja1 a.24.26.1 (A:1-120) Hy 3.6 3.3E+02 0.024 20.9 3.0 42 180-221 33-74 (120)
8 d1sqga1 a.79.1.3 (A:5-144) Rib 3.2 3.1E+02 0.023 20.1 2.5 27 187-214 114-140 (140)
9 d2iida2 d.16.1.5 (A:320-432) L 3.2 1.6E+02 0.012 19.9 0.7 12 26-37 11-22 (113)
10 d1kjwa2 c.37.1.1 (A:526-724) G 2.8 1.7E+02 0.012 22.8 0.5 19 179-197 122-140 (199)
No 1
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=6.95 E-value=59 Score=22.55 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=17.7
Q ss_pred ccccccc-cCCCCCCccCCccccc
Q 017825 129 GHSIACA-SYPYSDSYYGGAVPAY 151 (365)
Q Consensus 129 g~s~a~~-~ypy~Dpyygg~~aaY 151 (365)
+.-|+|. .-|-..|||.|||-+|
T Consensus 26 skkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 26 GKKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp SCCCEEEECSTTCCEEGGGTEECC
T ss_pred cceEEEEecCCCCCcccceEEeec
Confidence 3456776 6688889999999776
No 2
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=6.44 E-value=57 Score=28.25 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=12.5
Q ss_pred ceeecchh---------hHHHHHHHHH
Q 017825 179 PVYVNAKQ---------YHGILRRRQL 196 (365)
Q Consensus 179 PvyVNaKQ---------Y~rIlrRR~~ 196 (365)
.|||||.| |.|-+..=.+
T Consensus 49 SIFVNP~QF~~~eD~~~YPr~~~~D~~ 75 (276)
T d1v8fa_ 49 SVFVNPLQFGPGEDYHRYPRDLERDRA 75 (276)
T ss_dssp EECCCGGGCCTTSSTTTSCCCHHHHHH
T ss_pred EEEecCccCCCcchhhccccchhhhHH
Confidence 69999999 5666654433
No 3
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=5.84 E-value=1.5e+02 Score=22.35 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=19.6
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhhhh
Q 017825 180 VYVNAKQYHGILRRRQLRAKAELERKL 206 (365)
Q Consensus 180 vyVNaKQY~rIlrRR~~Rak~e~~~kl 206 (365)
++.+-|-..++.+||++.+++=+++.+
T Consensus 129 ~~~~g~~~~GL~~RR~~E~~L~l~g~~ 155 (158)
T d1xjua_ 129 VNSNGVPLRGLKIRREKERQLCLTGLV 155 (158)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHTTTS
T ss_pred HhcCCEEChhHHHHHHHHHHHHHcccc
Confidence 344445678999999999887776543
No 4
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=4.96 E-value=80 Score=27.41 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=8.2
Q ss_pred ceeecchhhH
Q 017825 179 PVYVNAKQYH 188 (365)
Q Consensus 179 PvyVNaKQY~ 188 (365)
.|||||.||.
T Consensus 54 SIFVNP~QF~ 63 (282)
T d1ihoa_ 54 SIFVNPMQFD 63 (282)
T ss_dssp EECCCGGGCS
T ss_pred EEEecCccCc
Confidence 5999998863
No 5
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.49 E-value=77 Score=27.52 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.9
Q ss_pred ceeecchhhHH
Q 017825 179 PVYVNAKQYHG 189 (365)
Q Consensus 179 PvyVNaKQY~r 189 (365)
.|||||.||.-
T Consensus 63 SIFVNP~QF~~ 73 (286)
T d2a84a1 63 SIFVNPMQFGA 73 (286)
T ss_dssp EECCCCCCTTC
T ss_pred EEeecccccCc
Confidence 68999999653
No 6
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=4.27 E-value=3.4e+02 Score=20.73 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhh
Q 017825 184 AKQYHGILRRRQLRAKAELERKLI 207 (365)
Q Consensus 184 aKQY~rIlrRR~~Rak~e~~~kl~ 207 (365)
.+.|..-.+||++|...+.+.+-+
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~~~ 158 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESKKV 158 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777776655554433
No 7
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=3.60 E-value=3.3e+02 Score=20.91 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=23.8
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhhhhhhcCCCccccchhhH
Q 017825 180 VYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLH 221 (365)
Q Consensus 180 vyVNaKQY~rIlrRR~~Rak~e~~~kl~k~rk~YlHESRH~H 221 (365)
.|-.-|=|-..+.+...+=+..+..-+...|.+|||+.-=..
T Consensus 33 Fy~~VKPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Qie~ 74 (120)
T d2huja1 33 FYKDMKPFVDEAKRCADDFLELAIPWVNTERPPYLGELQLRQ 74 (120)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 344445555555555555443343344447999999875433
No 8
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.25 E-value=3.1e+02 Score=20.09 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCcc
Q 017825 187 YHGILRRRQLRAKAELERKLIKVRKPYL 214 (365)
Q Consensus 187 Y~rIlrRR~~Rak~e~~~kl~k~rk~Yl 214 (365)
.++|| |+..|.+.+....+...-+.||
T Consensus 114 VNaVL-r~~~r~~~~~~~~~~~~~~~~~ 140 (140)
T d1sqga1 114 INGVL-RQFQRQQEELLAEFNASDARYL 140 (140)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTTSGGGGC
T ss_pred hHHHH-HHHHhCcHHHHHhhcccccccC
Confidence 45788 4666777776666554445554
No 9
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=3.22 E-value=1.6e+02 Score=19.94 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=8.9
Q ss_pred cccCccccCCCC
Q 017825 26 ISSQPWWRGVGH 37 (365)
Q Consensus 26 v~S~PWW~~~G~ 37 (365)
.+.+|||+.-|.
T Consensus 11 ~f~~~FW~~~g~ 22 (113)
T d2iida2 11 TCTTKFWEDDGI 22 (113)
T ss_dssp EESSCGGGGGTC
T ss_pred EcCCCCCCCcCC
Confidence 467999996554
No 10
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.83 E-value=1.7e+02 Score=22.84 Aligned_cols=19 Identities=5% Similarity=0.321 Sum_probs=12.8
Q ss_pred ceeecchhhHHHHHHHHHH
Q 017825 179 PVYVNAKQYHGILRRRQLR 197 (365)
Q Consensus 179 PvyVNaKQY~rIlrRR~~R 197 (365)
.|||.|.-+..++++|.++
T Consensus 122 ~IfI~pps~e~l~~l~kr~ 140 (199)
T d1kjwa2 122 AIFIRPRSLENVLEINKRI 140 (199)
T ss_dssp EEEECCSSHHHHHHHCTTS
T ss_pred EEeeccccHHHHHhhhccc
Confidence 4889888777666555433
Done!