Query 017826
Match_columns 365
No_of_seqs 185 out of 1119
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0053 MMT1 Predicted Co/Zn/C 100.0 1.5E-38 3.2E-43 309.7 25.8 212 131-361 5-216 (304)
2 KOG2802 Membrane protein HUEL 100.0 3.5E-40 7.7E-45 318.8 10.7 303 36-338 89-406 (503)
3 PRK03557 zinc transporter ZitB 100.0 6.1E-36 1.3E-40 292.4 26.9 204 138-361 18-221 (312)
4 PRK09509 fieF ferrous iron eff 100.0 5.8E-36 1.3E-40 290.6 26.0 207 136-361 8-214 (299)
5 COG1230 CzcD Co/Zn/Cd efflux s 100.0 2.5E-34 5.5E-39 276.9 25.0 207 134-361 17-223 (296)
6 TIGR01297 CDF cation diffusion 100.0 1.3E-31 2.8E-36 254.6 21.1 192 151-361 2-193 (268)
7 KOG1485 Mitochondrial Fe2+ tra 100.0 5.6E-29 1.2E-33 246.4 19.2 207 136-361 112-326 (412)
8 PF01545 Cation_efflux: Cation 100.0 1.1E-29 2.4E-34 242.7 2.5 204 141-360 1-205 (284)
9 KOG1484 Putative Zn2+ transpor 99.9 5.1E-24 1.1E-28 205.6 16.8 219 136-361 32-275 (354)
10 COG3965 Predicted Co/Zn/Cd cat 99.9 5.6E-22 1.2E-26 185.4 16.9 211 134-359 15-230 (314)
11 KOG1482 Zn2+ transporter [Inor 99.9 1.6E-22 3.5E-27 197.7 12.1 210 135-359 69-293 (379)
12 KOG1483 Zn2+ transporter ZNT1 99.8 9.6E-19 2.1E-23 172.0 6.8 217 138-360 8-299 (404)
13 TIGR01297 CDF cation diffusion 97.7 0.00025 5.5E-09 67.3 11.1 92 139-239 98-189 (268)
14 COG0053 MMT1 Predicted Co/Zn/C 97.6 0.00062 1.3E-08 66.9 12.3 91 139-238 121-211 (304)
15 PRK09509 fieF ferrous iron eff 97.6 0.00073 1.6E-08 65.9 12.4 93 140-241 120-212 (299)
16 PRK03557 zinc transporter ZitB 95.8 0.064 1.4E-06 52.8 10.2 72 162-241 148-219 (312)
17 COG1230 CzcD Co/Zn/Cd efflux s 88.0 4.4 9.4E-05 40.0 10.1 78 273-363 44-128 (296)
18 KOG1485 Mitochondrial Fe2+ tra 84.5 3.4 7.3E-05 42.4 7.4 81 148-237 240-320 (412)
19 COG4858 Uncharacterized membra 83.5 17 0.00037 33.7 10.7 115 218-346 102-216 (226)
20 COG4956 Integral membrane prot 82.0 44 0.00096 33.4 13.7 45 302-346 89-133 (356)
21 PF01545 Cation_efflux: Cation 81.7 1.1 2.4E-05 42.6 2.7 91 141-238 109-201 (284)
22 PF09877 DUF2104: Predicted me 53.4 32 0.00069 28.5 4.9 31 182-219 65-95 (99)
23 PF04246 RseC_MucC: Positive r 50.5 1.1E+02 0.0023 26.2 8.2 55 138-196 68-122 (135)
24 PLN02601 beta-carotene hydroxy 46.6 3E+02 0.0064 27.1 13.8 44 227-270 115-160 (303)
25 TIGR03813 put_Glu_GABA_T putat 42.9 2.9E+02 0.0062 28.4 11.4 12 190-201 382-393 (474)
26 COG4035 Predicted membrane pro 39.7 33 0.00072 28.2 3.0 43 171-220 60-103 (108)
27 KOG1484 Putative Zn2+ transpor 37.0 1E+02 0.0022 31.1 6.6 63 173-243 213-275 (354)
28 PF07226 DUF1422: Protein of u 32.8 3.2E+02 0.0069 23.4 11.1 56 173-242 36-93 (117)
29 PF11712 Vma12: Endoplasmic re 32.6 3E+02 0.0064 23.8 8.2 23 139-161 75-97 (142)
30 KOG1482 Zn2+ transporter [Inor 30.0 2.4E+02 0.0052 28.8 8.0 72 271-355 93-171 (379)
31 PF06570 DUF1129: Protein of u 29.5 4.4E+02 0.0096 24.1 17.0 23 320-342 175-197 (206)
32 PF02038 ATP1G1_PLM_MAT8: ATP1 28.8 1.1E+02 0.0024 22.2 4.0 27 196-223 4-30 (50)
33 PF09685 Tic20: Tic20-like pro 28.7 3E+02 0.0065 21.9 9.5 31 171-201 74-104 (109)
34 COG2056 Predicted permease [Ge 26.3 7.4E+02 0.016 25.6 10.8 11 195-205 158-168 (444)
35 PF15050 SCIMP: SCIMP protein 25.8 1.2E+02 0.0025 26.2 4.2 28 246-273 13-40 (133)
36 PF11654 DUF2665: Protein of u 21.5 88 0.0019 22.5 2.3 18 321-338 5-22 (47)
37 PRK11380 hypothetical protein; 20.7 9E+02 0.02 24.6 10.4 13 190-202 6-18 (353)
38 KOG1483 Zn2+ transporter ZNT1 20.0 5.9E+02 0.013 26.3 8.6 63 272-346 30-99 (404)
No 1
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-38 Score=309.72 Aligned_cols=212 Identities=21% Similarity=0.235 Sum_probs=190.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHH
Q 017826 131 ETTDEHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVW 210 (365)
Q Consensus 131 ~~~~~~~~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~La 210 (365)
..+.+..+|+.++++.+|++++++|+++|+++||.||+|||+||++|++++++.++++|+++||||++|||||||+|+++
T Consensus 5 ~~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~ 84 (304)
T COG0053 5 EERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLA 84 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH
Confidence 35667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcCCCC
Q 017826 211 SLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPT 290 (365)
Q Consensus 211 ali~av~L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd~~t 290 (365)
+++.+++++++|. +++++++.++++|++++++.+++++++++++++..++.+. .+.+++.+|+.+.+|++|
T Consensus 85 sl~~~~~i~~~g~-~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~---~~~~kk~~S~aL~Ada~h----- 155 (304)
T COG0053 85 SLIVSILIFAAGF-EILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYL---RRVGKKTNSQALIADALH----- 155 (304)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCHHHHHHhHH-----
Confidence 9999999998886 6889999999999988888899999999999997775544 455567899999999998
Q ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCCCC
Q 017826 291 SVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNLH 361 (365)
Q Consensus 291 s~~V~l~D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~~~ 361 (365)
..+|.+.+.+++++. . ..++||||+||+++++|+++|++++++++|++ ...|+|+++|+++
T Consensus 156 ----~~sD~~ts~~~lvgl---~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s--~~~L~d~~~~~~~ 216 (304)
T COG0053 156 ----HRSDVLTSLAVLVGL---L-GSLLGWPWLDPLAALLISLYILKTGFRLFKES--VNELMDAALDPED 216 (304)
T ss_pred ----HHHHHHHHHHHHHHH---H-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcCCCHHH
Confidence 456777777765433 3 35689999999999999999999999999999 9999999988865
No 2
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=100.00 E-value=3.5e-40 Score=318.84 Aligned_cols=303 Identities=38% Similarity=0.515 Sum_probs=281.2
Q ss_pred hhhhHHHHHHHhcccCccc---ccCCCccc--------ceeeccc-cccchhhhhcccccccccccccccch-hhhhhhh
Q 017826 36 MRTSWRFLSRLLHSSKRTA---VLNPSSPF--------NVFINDN-NGKFFSILEHTNQFRGFCSVHCSKRF-VLLGLVS 102 (365)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (365)
||.+++++|+++||+|++| .+.+++|+ |.|.+.. .+.++...+.++|-....|..|.|.+ +..|..+
T Consensus 89 kq~~k~~~s~a~ls~r~ry~e~n~i~~v~aiaeF~lk~s~ledl~K~r~~s~~~~~ssh~~yl~sdv~~kal~v~gs~ea 168 (503)
T KOG2802|consen 89 KQEPKQVRSKAVLSKRERYTENNFITGVRAIAEFCLKSSDLEDLPKIRRRSPHEDTSSHTVYLRSDVEAKALEVWGSPEA 168 (503)
T ss_pred chhhhhhhhHHhhcchhcchhhcccchhHHHHHhhccccchhhcccccccCcccCCCCceEEeehhhhhhhheeecCHHH
Confidence 7899999999999999998 56677787 7778876 88999999999999999999999999 8889999
Q ss_pred ccCCCCCccccccCCchhhhhhhhhcchhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017826 103 FDNSGSNQHHKYSSNRNFFTRAKQVKKIETTD--EHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFAN 180 (365)
Q Consensus 103 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls 180 (365)
+|.++..+-..|+.|..+.+|.+...+.+... +...|++..++++|.+-+.+|+.+|++|||.+|+|+++||+.|..+
T Consensus 169 L~rerrplve~yr~~l~~~~R~~~~~R~e~~n~~k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~N 248 (503)
T KOG2802|consen 169 LARERRPLVEEYRERLFRNQRILREYRDELGNTAKGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCN 248 (503)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHH
Confidence 99999446667998888888888887766554 7788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 017826 181 QVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGAS 260 (365)
Q Consensus 181 ~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~ 260 (365)
++++.++++.+.|.||..|||||++..++++++.|++||.+|.+..+|+++..|++|+|+++..|++.+...+++..+..
T Consensus 249 Q~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGas 328 (503)
T KOG2802|consen 249 QLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGAS 328 (503)
T ss_pred HHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchH
Confidence 99999999999999999999999999999999999999999999899999999999999999889998888999999999
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHhcCCCCchhHhhhhhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHH
Q 017826 261 LLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMV 338 (365)
Q Consensus 261 ~~~~~~~~k~~~~~~s~~l~ad~~~sd~~ts~~V~l~D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~ 338 (365)
++++.+..+++.+.+++.++.+.|.++||++.+|+++|.++++|+++|+.++.++.++|.|+.||+++|+|+.++-..
T Consensus 329 llvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvVl~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV 406 (503)
T KOG2802|consen 329 LLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVVLLEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV 406 (503)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhhcCCCcceEEEecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH
Confidence 999999999988889999999999999999999999999999999999999999999999999999999999887654
No 3
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=6.1e-36 Score=292.36 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 017826 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVG 217 (365)
Q Consensus 138 ~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~ 217 (365)
+|.+++++++|++++++|+++|+++||.|++|||+||+.|++++++++++.|+++||||++|||||+|+|++++++++++
T Consensus 18 ~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 18 ARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIA 97 (312)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcCCCCchhHhhh
Q 017826 218 IFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTE 297 (365)
Q Consensus 218 L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd~~ts~~V~l~ 297 (365)
+++++. ++++||++++.+|.+++ ..++++++++++++|.+++++.+ ++++.++..++++++| +.+
T Consensus 98 l~~~~~-~i~~eai~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~s~~l~a~~~h---------~~~ 162 (312)
T PRK03557 98 LVVITI-LIVWEAIERFRTPRPVA-GGMMMAIAVAGLLANILSFWLLH----HGSEEKNLNVRAAALH---------VLG 162 (312)
T ss_pred HHHHHH-HHHHHHHHHHcCCcccc-chHHHHHHHHHHHHHHHHHHHHh----cccccCCHHHHHHHHH---------HHH
Confidence 988885 68899999999887665 34566677788888877655443 2344567789999887 678
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCCCC
Q 017826 298 DGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNLH 361 (365)
Q Consensus 298 D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~~~ 361 (365)
|.+.++++++++ .+..++||+|+||++++++++++++.+++++|++ ...|+|.++|+++
T Consensus 163 D~l~s~~vlv~~---~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~--~~~Lld~~p~~~~ 221 (312)
T PRK03557 163 DLLGSVGAIIAA---LIIIWTGWTPADPILSILVSVLVLRSAWRLLKES--VNELLEGAPVSLD 221 (312)
T ss_pred HHHHHHHHHHHH---HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCCCCCC
Confidence 888888776544 2335689999999999999999999999999999 7788888777553
No 4
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=5.8e-36 Score=290.58 Aligned_cols=207 Identities=17% Similarity=0.115 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHH
Q 017826 136 HSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISA 215 (365)
Q Consensus 136 ~~~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~a 215 (365)
..+|+.++++++|++++++|+++|+++||.||+|||+||+.|++++++++++.|+++||||++|||||+|+|++++++++
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcCCCCchhHh
Q 017826 216 VGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVM 295 (365)
Q Consensus 216 v~L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd~~ts~~V~ 295 (365)
+++++++. ++++||++++++|++++.+.++++++++++++|.+++++.++. +++.+|+.++++.+| .
T Consensus 88 ~~l~~~~~-~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~---~~~~~s~~l~a~~~~---------~ 154 (299)
T PRK09509 88 MFISGSAL-FLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWV---VRKTQSQAVRADMLH---------Y 154 (299)
T ss_pred HHHHHHHH-HHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHH---------H
Confidence 98877775 6889999999999887777777888888999987765544433 345678999999887 5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCCCC
Q 017826 296 TEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNLH 361 (365)
Q Consensus 296 l~D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~~~ 361 (365)
.+|.+.+.++++ + +.+ .++||+|+||++++++++++++.++++++++ ...|+|+++|+++
T Consensus 155 ~~D~~~s~~vl~-~--~~~-~~~g~~~~D~i~aiii~~~il~~~~~i~~~~--~~~Ll~~~~~~~~ 214 (299)
T PRK09509 155 QSDVMMNGAILL-A--LGL-SWYGWHRADALFALGIGIYILYSALRMGYEA--VQSLLDRALPDEE 214 (299)
T ss_pred HHHHHHHHHHHH-H--HHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCCCHHH
Confidence 678777655433 2 333 3569999999999999999999999999999 8999999887753
No 5
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=276.89 Aligned_cols=207 Identities=18% Similarity=0.225 Sum_probs=184.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHH
Q 017826 134 DEHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLI 213 (365)
Q Consensus 134 ~~~~~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali 213 (365)
..+.+|.+++++..|+.++++|+++|+++||+||+||++|++.|+++.++++++.++++||++.+|||||.|+|.+++++
T Consensus 17 ~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~ 96 (296)
T COG1230 17 NPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFL 96 (296)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHH
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcCCCCchh
Q 017826 214 SAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVA 293 (365)
Q Consensus 214 ~av~L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd~~ts~~ 293 (365)
+++.++.++. ++++|+++|+++|++++. ..+++++++++++|.++.+...+. +.++.++++..+|
T Consensus 97 nav~Li~~s~-~I~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~ll~~~-----~~~~lN~r~a~LH-------- 161 (296)
T COG1230 97 NALLLIVVSL-LILWEAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSALLLHKG-----HEENLNMRGAYLH-------- 161 (296)
T ss_pred HHHHHHHHHH-HHHHHHHHHhcCCCCCCc-cchHHHHHHHHHHHHHHHHHhhCC-----CcccchHHHHHHH--------
Confidence 9999888876 788999999999998886 677888899999999987765422 3357888888887
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCCCC
Q 017826 294 VMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNLH 361 (365)
Q Consensus 294 V~l~D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~~~ 361 (365)
+++|.+.++|++++++ ...++||+|+||+++++++++++..+++++|++ .+.|++..|+..+
T Consensus 162 -vl~D~Lgsv~vIia~i---~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s--~~iLle~~P~~id 223 (296)
T COG1230 162 -VLGDALGSVGVIIAAI---VIRFTGWSWLDPILSIVIALLILSSAWPLLKES--LNILLEGVPEGID 223 (296)
T ss_pred -HHHHHHHHHHHHHHHH---HHHHhCCCccchHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCCccC
Confidence 6799999999998774 346799999999999999999999999999999 7888887775543
No 6
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=1.3e-31 Score=254.56 Aligned_cols=192 Identities=19% Similarity=0.262 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017826 151 VFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNG 230 (365)
Q Consensus 151 l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~~ig~~~ii~es 230 (365)
++++|+++|+++||.||++||+||+.|++++++++++.++++||||++|||||+|+|+++++++++++++++. ++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~-~~~~~s 80 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVAL-FILYEA 80 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999998887765 688999
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcCCCCchhHhhhhhHHHHHHHHHHH
Q 017826 231 IQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGA 310 (365)
Q Consensus 231 i~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd~~ts~~V~l~D~~~~~gvvla~~ 310 (365)
++++++|++++...++++++++++++|.+++++.+ +.+++.+++.++++.+| ...|.+.+.+++++.
T Consensus 81 i~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~s~~l~a~~~~---------~~~D~~~s~~vli~~- 147 (268)
T TIGR01297 81 IERLINPEPEIDGGTMLIVAIVGLIVNLILALYLH---RVGHRLGSLALRAAALH---------VLSDALSSVGVLIGA- 147 (268)
T ss_pred HHHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHH---HhCccCCCHHHHHHHHH---------HHHHHHHHHHHHHHH-
Confidence 99999987666667777888889999988765443 34566789999999887 467777776665433
Q ss_pred HHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCCCC
Q 017826 311 SLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNLH 361 (365)
Q Consensus 311 gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~~~ 361 (365)
.+..+ +|+|+||++++++++++++.++++++++ ...|+|.++|+++
T Consensus 148 --~~~~~-~~~~~D~l~~i~i~~~i~~~~~~l~~~~--~~~Ll~~~~~~~~ 193 (268)
T TIGR01297 148 --LLIYF-GWHWADPIAALLISLLILYTAFRLLKES--INVLLDAAPDEED 193 (268)
T ss_pred --HHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCCccc
Confidence 33343 4899999999999999999999999999 8899998886653
No 7
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.6e-29 Score=246.42 Aligned_cols=207 Identities=17% Similarity=0.159 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHH
Q 017826 136 HSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISA 215 (365)
Q Consensus 136 ~~~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~a 215 (365)
.++++.++++++|++++++|+++|+++||+|++||++||+.|+++.+++|+..+.++|||+.+||||++|+|+++.+.++
T Consensus 112 ~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S 191 (412)
T KOG1485|consen 112 AERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVS 191 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-------CCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcC
Q 017826 216 VGIFCLGSGATIVNGIQHLWTAE-------APENM-KYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGH 287 (365)
Q Consensus 216 v~L~~ig~~~ii~esi~rL~~~~-------~~~~~-~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd 287 (365)
++|..+|+ .++++++.++..|. ++... ..+++++++++..+++.++..++..+ +.++..+++.+||
T Consensus 192 ~iMa~agv-~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~---~~ns~iv~a~A~d-- 265 (412)
T KOG1485|consen 192 VIMAMAGV-QIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAI---KTNSNIVRANAWD-- 265 (412)
T ss_pred HHHHHHHH-HHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHHH---hcCcHHHHHHHHH--
Confidence 99888887 47799999887622 11111 12334444444555555555544443 3466888999996
Q ss_pred CCCchhHhhhhhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCCCC
Q 017826 288 DPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNLH 361 (365)
Q Consensus 288 ~~ts~~V~l~D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~~~ 361 (365)
...|.+..+ +.+ +++.++ +..|+|+||+++++++.+++++|.+...++ ...|.|+++|||+
T Consensus 266 -------Hr~D~lTn~-vaL--va~~la-~~~~~~lDP~gailVS~~ii~t~~~t~~~~--i~~Lvg~~a~pe~ 326 (412)
T KOG1485|consen 266 -------HRNDVLTNS-VAL--VAASLA-YYYNYWLDPIGAILVSTYIIYTGGRTGLEN--IKELVGRSAPPEY 326 (412)
T ss_pred -------HHhHHHHHH-HHH--HHHHHH-HhhhhcccchhhhhhheehhhhhhHHHHHH--HHHHhCCCCCHHH
Confidence 233432222 122 222333 345789999999999999999999999999 9999999888875
No 8
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=99.95 E-value=1.1e-29 Score=242.67 Aligned_cols=204 Identities=19% Similarity=0.186 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 017826 141 VTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFC 220 (365)
Q Consensus 141 l~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~~ 220 (365)
+++++++|++++++|+++|+++||.++++||+||+.|+++.++.+++.+.+.||||++|||||+|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcCCCCchhHhhhhhH
Q 017826 221 LGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGA 300 (365)
Q Consensus 221 ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd~~ts~~V~l~D~~ 300 (365)
++. +++++++++++++++++.+.+++.+++++++++..++++.++..|+ .+..++.++++..+ ...|.+
T Consensus 81 ~~~-~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~~~~s~~l~~~~~~---------~~~d~~ 149 (284)
T PF01545_consen 81 LGL-FLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRVGKR-LQRRSPALRADALH---------SLIDVL 149 (284)
T ss_dssp HHH-HHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHHHHH-S---SHHHHHHHHH---------HHHHTS
T ss_pred hHH-HHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhcccc-cccccccchhhhhh---------cccchh
Confidence 776 6789999999999877776666666778899998887776654443 22337888888775 334544
Q ss_pred HHHHHHHHHHHHHHHHhhCCcc-hhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCCC
Q 017826 301 AVTGLVIAGASLIAVNVTGNAI-YDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNL 360 (365)
Q Consensus 301 ~~~gvvla~~gl~l~~~~g~~~-iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~~ 360 (365)
.+.+++++. ++..+.+|.| +||++++++++++++.+++++|++ ...|+|++++++
T Consensus 150 ~s~~v~i~~---~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~--~~~Ll~~~~~~~ 205 (284)
T PF01545_consen 150 SSLAVLISL---LLAYLGPWFWYADPVASLLIALFILYSGYPLIKES--IRILLDASPDPE 205 (284)
T ss_dssp -SSTS-SSS---TSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHH--HHHHTT-SHHHH
T ss_pred HHHHHHHHH---HHHHHHhcccccchhhhhHHHHHHhhhhhhchhhh--hccccccccccc
Confidence 444443332 3334455666 999999999999999999999999 889999986654
No 9
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.1e-24 Score=205.58 Aligned_cols=219 Identities=13% Similarity=0.133 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHH
Q 017826 136 HSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISA 215 (365)
Q Consensus 136 ~~~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~a 215 (365)
+.+|-++..+..|+.++.++++.|..|||.++++|+.|++.|+.+.++.+++..++++|++..||||++|+|.+++++++
T Consensus 32 ~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~ 111 (354)
T KOG1484|consen 32 KDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNG 111 (354)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHH
Confidence 44678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cc---HHHH--------H-
Q 017826 216 VGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAA--EG---MTIR--------D- 281 (365)
Q Consensus 216 v~L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~--~s---~~l~--------a- 281 (365)
+++.+.+. ++..|+++|+++|++... +-.+++...++++|.+..+..........+. .+ .+.. .
T Consensus 112 vflvl~a~-fi~~Es~eRl~~ppei~t-~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~ 189 (354)
T KOG1484|consen 112 VFLVLIAF-FIFSESVERLFDPPEIHT-NRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVW 189 (354)
T ss_pred HHHHHHHH-HHhHHHHHHhcCchhcCC-ceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccccccc
Confidence 98877665 577899999999976653 3344556667778876655443321111110 00 0000 0
Q ss_pred H-----HH------hcCCCCchhHhhhhhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHchhhh
Q 017826 282 Y-----IW------RGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIINSLIH 350 (365)
Q Consensus 282 d-----~~------~sd~~ts~~V~l~D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ai~~ 350 (365)
+ .+ +.+.+.-..-++.|.+.++|++++- ++..++||.++||+++++|+++++.+.++++|++ ..
T Consensus 190 ~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist---~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s--~~ 264 (354)
T KOG1484|consen 190 DLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIIST---LLIKLFGWMIADPICSLLIAILIFLSVLPLLKYS--GK 264 (354)
T ss_pred ccccccccccCCcccccccchhHHHHHHHhcchHHHHHH---HHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 0 00 0111211223468998888887754 5557889999999999999999999999999999 89
Q ss_pred hccCCCCCCCC
Q 017826 351 ALESPEVGNLH 361 (365)
Q Consensus 351 lLlg~~~~~~~ 361 (365)
.|+.+.||+.+
T Consensus 265 iLLq~tPp~~~ 275 (354)
T KOG1484|consen 265 ILLQRTPPHLE 275 (354)
T ss_pred HHHhcCChhhh
Confidence 99999888743
No 10
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.6e-22 Score=185.43 Aligned_cols=211 Identities=14% Similarity=-0.009 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCcchhHHHHHHHH
Q 017826 134 DEHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSR-RAPDALHPYGYSKERFVWSL 212 (365)
Q Consensus 134 ~~~~~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~-rp~d~~~PyG~~R~E~Laal 212 (365)
...+++.+.+|+...++++.+.+++|+++||.+++.||++|+.|+...++++.+.|+.. +|.|.|||||++..||+.-.
T Consensus 15 ~~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ 94 (314)
T COG3965 15 SSNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLA 94 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhh
Confidence 34568999999999999999999999999999999999999999999999999999888 67777999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcCCCCch
Q 017826 213 ISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSV 292 (365)
Q Consensus 213 i~av~L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd~~ts~ 292 (365)
+++..+.++++ |.++.|+..+++|++...+++++++.+++..+|...++..+|..|+ ..|+-+..|..+
T Consensus 95 ing~ll~ll~l-yAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr---~~s~lIald~kq------- 163 (314)
T COG3965 95 INGTLLALLCL-YALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRR---LKSPLIALDTKQ------- 163 (314)
T ss_pred hccHHHHHHHH-HHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCchhhhHHHH-------
Confidence 99999998887 7999999999999987778999999999999998887776655444 345544444321
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHhhCC----cchhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCC
Q 017826 293 AVMTEDGAAVTGLVIAGASLIAVNVTGN----AIYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGN 359 (365)
Q Consensus 293 ~V~l~D~~~~~gvvla~~gl~l~~~~g~----~~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~ 359 (365)
+..|.+.+.++.++++.-++...|.| +|+||.+-.+++++++..+++.++.+ ..+.| -..|++
T Consensus 164 --W~Mst~lS~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~a-l~eiL-lmtP~e 230 (314)
T COG3965 164 --WLMSTCLSAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSA-LREIL-LMTPNE 230 (314)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHH-HHHHH-hcCcHH
Confidence 33455566666655543344334443 67999999999999999999999887 44444 334443
No 11
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.6e-22 Score=197.70 Aligned_cols=210 Identities=15% Similarity=0.132 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHH
Q 017826 135 EHSQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLIS 214 (365)
Q Consensus 135 ~~~~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~ 214 (365)
+..+|.++++.++.+.+++.|++.|+.+||+|+++|+.|.+.|+.+..+++++.+.++|||+++..||+.|+|.+++++
T Consensus 69 ~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~- 147 (379)
T KOG1482|consen 69 RAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALV- 147 (379)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHH-
Confidence 3367889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------cHHH
Q 017826 215 AVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAE---------------GMTI 279 (365)
Q Consensus 215 av~L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~---------------s~~l 279 (365)
+++++++..+++++++++|++++....+..+++++..+++++|.++.+++.+.. ++.+.. +.++
T Consensus 148 Sv~~IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~-h~h~H~~~~s~g~~h~~~~~~n~nv 226 (379)
T KOG1482|consen 148 SVLLIWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSG-HGHSHGGSHSHGHSHDHGEELNLNV 226 (379)
T ss_pred HHHHHHHhhhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccC-CCCCCCCCCCcCcccccccccchHH
Confidence 566666666678899999999998555567777888888999988877776542 111111 2566
Q ss_pred HHHHHhcCCCCchhHhhhhhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCC
Q 017826 280 RDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGN 359 (365)
Q Consensus 280 ~ad~~~sd~~ts~~V~l~D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~ 359 (365)
++...| ++.|.+.+.|+.+++.. .-..++|.++||+..++.+++.+.+-..++|+. ...|++..|-.
T Consensus 227 raAyiH---------VlGDliQSvGV~iaa~I--i~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~--~~iLmE~~P~~ 293 (379)
T KOG1482|consen 227 RAAFVH---------VLGDLIQSVGVLIAALI--IYFKPEYKIADPICTFVFSIIVLGTTITILRDI--LGILMEGTPRN 293 (379)
T ss_pred HHHHHH---------HHHHHHHHHHHHhhhee--EEecccceecCchhhhhHHHHHHHhHHHHHHHH--HHHHhcCCCcc
Confidence 777666 67999999999887632 223458999999999999999999999999998 66666655544
No 12
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.75 E-value=9.6e-19 Score=171.97 Aligned_cols=217 Identities=16% Similarity=0.192 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 017826 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVG 217 (365)
Q Consensus 138 ~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~ 217 (365)
+..+..-+++.++++++|++.|+.++|+||++|.+|++.|+++.++++++.|.+++.+++++|||+.|+|.+++++++++
T Consensus 8 ~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~if 87 (404)
T KOG1483|consen 8 SLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIF 87 (404)
T ss_pred ccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHH
Confidence 34456677889999999999999999999999999999999999999999999999899999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-----hc-----cc--c---------
Q 017826 218 IFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAV-KK-----GA-----AA--E--------- 275 (365)
Q Consensus 218 L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~-k~-----~~-----~~--~--------- 275 (365)
+..++. .+..|+++|+++|++..+|-..+.+.+++++.|.+.++...-.. .. ++ +. .
T Consensus 88 l~alc~-~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~ 166 (404)
T KOG1483|consen 88 LTALCV-SILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSH 166 (404)
T ss_pred HHHHHH-HHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCchh
Confidence 776665 35589999999999888887777777788888877665543221 00 00 00 0
Q ss_pred --c---------------HH--H----H-H------HHH-h---cC-------------CCCchhH---hhhhhHHHHHH
Q 017826 276 --G---------------MT--I----R-D------YIW-R---GH-------------DPTSVAV---MTEDGAAVTGL 305 (365)
Q Consensus 276 --s---------------~~--l----~-a------d~~-~---sd-------------~~ts~~V---~l~D~~~~~gv 305 (365)
. +. + . . +.. + ++ ..+.-++ ++.|+..++++
T Consensus 167 ~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~V 246 (404)
T KOG1483|consen 167 AIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIV 246 (404)
T ss_pred ccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceEE
Confidence 0 00 0 0 0 000 0 00 0111122 34677777776
Q ss_pred HHHHHHHHHHHhhCCc---chhHHHHHHHHHHHHHHHHHHHHHchhhhhccCCCCCCC
Q 017826 306 VIAGASLIAVNVTGNA---IYDPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNL 360 (365)
Q Consensus 306 vla~~gl~l~~~~g~~---~iDpi~aIlIallIl~~a~~ll~e~ai~~lLlg~~~~~~ 360 (365)
+.+++ ..++++|. |+||+.+++++++|+.+++++.||+ -..|+...|...
T Consensus 247 i~~A~---~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s--~liLLq~~P~~i 299 (404)
T KOG1483|consen 247 IVSAL---FVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKES--ALILLQTTPGSI 299 (404)
T ss_pred EEEEE---EEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHH--HHHHHHhCCCcc
Confidence 65442 22455654 5899999999999999999999999 668887766543
No 13
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=97.75 E-value=0.00025 Score=67.34 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 017826 139 RAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGI 218 (365)
Q Consensus 139 ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L 218 (365)
-...+++++|+++...+.-.|--.+|.++.+|+.|++.|+++++..+++...+. ||+.+++++++++.++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 355667788888888888888889999999999999999999999999998875 678899999999999988
Q ss_pred HHHHHHHHHHHHHHHhhcCCC
Q 017826 219 FCLGSGATIVNGIQHLWTAEA 239 (365)
Q Consensus 219 ~~ig~~~ii~esi~rL~~~~~ 239 (365)
+..+. .++.+++..+++..+
T Consensus 170 ~~~~~-~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 170 LYTAF-RLLKESINVLLDAAP 189 (268)
T ss_pred HHHHH-HHHHHHHHHHhCCCC
Confidence 87775 477999999998665
No 14
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00062 Score=66.92 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 017826 139 RAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGI 218 (365)
Q Consensus 139 ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L 218 (365)
-+..++.+.+..+.-.+.-.|--+||.++.||+.|+.+|+++++..++++- +.. +|+..++++++++.++.+
T Consensus 121 ~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~-------~g~~~lD~i~a~~I~~~I 192 (304)
T COG0053 121 GVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSL-------LGWPWLDPLAALLISLYI 192 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHH-------hCcHHHHHHHHHHHHHHH
Confidence 456667777888888888899999999999999999999999999999998 433 678899999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 017826 219 FCLGSGATIVNGIQHLWTAE 238 (365)
Q Consensus 219 ~~ig~~~ii~esi~rL~~~~ 238 (365)
+..+. .++.+++..|++..
T Consensus 193 l~~~~-~~~~~s~~~L~d~~ 211 (304)
T COG0053 193 LKTGF-RLFKESVNELMDAA 211 (304)
T ss_pred HHHHH-HHHHHHHHHHhCcC
Confidence 88875 57799999999843
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.62 E-value=0.00073 Score=65.92 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 017826 140 AVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIF 219 (365)
Q Consensus 140 al~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~ 219 (365)
...+++++|.++...+-..+--++|.++.+|+.|+..|+++++..+++.-.+. +|+..++++++++.++.++
T Consensus 120 ~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il 191 (299)
T PRK09509 120 VTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYIL 191 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHH
Confidence 45566777887777777778889999999999999999999999999888764 5788999999999999887
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC
Q 017826 220 CLGSGATIVNGIQHLWTAEAPE 241 (365)
Q Consensus 220 ~ig~~~ii~esi~rL~~~~~~~ 241 (365)
..+. .++.+++..|++..+++
T Consensus 192 ~~~~-~i~~~~~~~Ll~~~~~~ 212 (299)
T PRK09509 192 YSAL-RMGYEAVQSLLDRALPD 212 (299)
T ss_pred HHHH-HHHHHHHHHHhccCCCH
Confidence 7775 47799999999865433
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=95.84 E-value=0.064 Score=52.80 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 017826 162 TSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPE 241 (365)
Q Consensus 162 s~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~~ig~~~ii~esi~rL~~~~~~~ 241 (365)
.+|.++.+|+.|...|+++++.++++.-+... +|+.-+.++++++.+++++..+. -++.+++..|+++.+++
T Consensus 148 ~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~~-~l~~~~~~~Lld~~p~~ 219 (312)
T PRK03557 148 EKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSAW-RLLKESVNELLEGAPVS 219 (312)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCC
Confidence 46889999999999999999998888866542 24445999999999998888775 47799999999865543
No 17
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=88.03 E-value=4.4 Score=39.96 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=54.5
Q ss_pred ccccHHHHHHHHhcCCCCchhHhhhhhHHHHHHHHHHHHHHHHH-------hhCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 017826 273 AAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVN-------VTGNAIYDPIGSIIVGNLLGMVLFFSKII 345 (365)
Q Consensus 273 ~~~s~~l~ad~~~sd~~ts~~V~l~D~~~~~gvvla~~gl~l~~-------~~g~~~iDpi~aIlIallIl~~a~~ll~e 345 (365)
..+|..+.+|++| +++|.++.. ++.+++.++. -+||..+.-+++++=+++++..+.-+++|
T Consensus 44 ~s~SlaLLADa~H---------ml~D~~al~---lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~E 111 (296)
T COG1230 44 LTGSLALLADALH---------MLSDALALL---LALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWE 111 (296)
T ss_pred HhccHHHHHhHHH---------HHHHHHHHH---HHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999998 667764433 3333233321 23677799999999999999999999999
Q ss_pred chhhhhccCCCCCCCCcc
Q 017826 346 NSLIHALESPEVGNLHMI 363 (365)
Q Consensus 346 ~ai~~lLlg~~~~~~~~~ 363 (365)
+ +......++++..+|.
T Consensus 112 A-i~R~~~P~~i~~~~ml 128 (296)
T COG1230 112 A-IQRLLAPPPIHYSGML 128 (296)
T ss_pred H-HHHhcCCCCCCccchH
Confidence 7 4455556666666664
No 18
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=84.46 E-value=3.4 Score=42.38 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 017826 148 NFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATI 227 (365)
Q Consensus 148 Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~~ig~~~ii 227 (365)
....+.+-...+..++|-.++|-|.|=..|+++..++|++...+. |.+.-+-|+++++++..++..+. ...
T Consensus 240 ~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~ii~t~~-~t~ 310 (412)
T KOG1485|consen 240 KEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYIIYTGG-RTG 310 (412)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheehhhhhh-HHH
Confidence 333334445567778999999999999999999999999999987 45567889999999888777775 467
Q ss_pred HHHHHHhhcC
Q 017826 228 VNGIQHLWTA 237 (365)
Q Consensus 228 ~esi~rL~~~ 237 (365)
.+++..|...
T Consensus 311 ~~~i~~Lvg~ 320 (412)
T KOG1485|consen 311 LENIKELVGR 320 (412)
T ss_pred HHHHHHHhCC
Confidence 8999998864
No 19
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=83.47 E-value=17 Score=33.68 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhcCCCCchhHhhh
Q 017826 218 IFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTE 297 (365)
Q Consensus 218 L~~ig~~~ii~esi~rL~~~~~~~~~~~~l~v~lislvv~~~~~~~~~~~~k~~~~~~s~~l~ad~~~sd~~ts~~V~l~ 297 (365)
++++|+ +.+..++..+++... ..++++..+++.++-+..++..+|...+....+|+ +..-|. .++|...
T Consensus 102 Ll~lg~-~aLlsgitaff~~nA---~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sq--r~~~~K-----~~lv~~~ 170 (226)
T COG4858 102 LLFLGA-MALLSGITAFFQKNA---QVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQ--RPGTWK-----YLLVAVL 170 (226)
T ss_pred HHHHHH-HHHHHHHHHHHhcCC---cchhHHHHHHHHHhhhHHHHHHHHHHHHhhccccc--CCchHH-----HHHHHHH
Confidence 345564 567888888887653 34555555555555555455444444332211111 111111 1111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHc
Q 017826 298 DGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIIN 346 (365)
Q Consensus 298 D~~~~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ 346 (365)
..+.++.+.++- .++ --.-.+.+||++-.+++..++-.=|-+=|+-
T Consensus 171 sm~lWi~v~i~t--~~l-PtslN~~L~pi~l~IiGav~lalRfylkkk~ 216 (226)
T COG4858 171 SMLLWIAVMIAT--VFL-PTSLNPQLPPIALTIIGAVILALRFYLKKKK 216 (226)
T ss_pred HHHHHHHHHHHH--hhC-CCcCCcCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 111122221110 000 0001477999999999998887776665543
No 20
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=81.98 E-value=44 Score=33.35 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHHHHHHc
Q 017826 302 VTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLGMVLFFSKIIN 346 (365)
Q Consensus 302 ~~gvvla~~gl~l~~~~g~~~iDpi~aIlIallIl~~a~~ll~e~ 346 (365)
.+|++++..........+.|++-++.++++++++.+.++.+.-..
T Consensus 89 iiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~ 133 (356)
T COG4956 89 IIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKK 133 (356)
T ss_pred HHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhh
Confidence 344444433222224568899999999999999999999887654
No 21
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=81.74 E-value=1.1 Score=42.61 Aligned_cols=91 Identities=22% Similarity=0.122 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 017826 141 VTTALWGNFLVFSLKFGVWLGTS--SHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGI 218 (365)
Q Consensus 141 l~isl~~Nl~l~i~klv~G~ls~--S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L 218 (365)
..+++++|+++....--.|--.+ |.++.+|+.|...|.+.++..+++.-...-.+... -++++++++.++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~~~~~------~~D~v~~l~i~~~i 182 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLGPWFW------YADPVASLLIALFI 182 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT-STS-------SSHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHHhccc------ccchhhhhHHHHHH
Confidence 45555556555555554444455 99999999999999999999988887766542221 47899999998888
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 017826 219 FCLGSGATIVNGIQHLWTAE 238 (365)
Q Consensus 219 ~~ig~~~ii~esi~rL~~~~ 238 (365)
+..+. -.+.+++..|++..
T Consensus 183 ~~~~~-~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 183 LYSGY-PLIKESIRILLDAS 201 (284)
T ss_dssp HHHHH-HHHHHHHHHHTT-S
T ss_pred hhhhh-hchhhhhccccccc
Confidence 77765 46789999998765
No 22
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=53.39 E-value=32 Score=28.49 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 017826 182 VLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIF 219 (365)
Q Consensus 182 ~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~ 219 (365)
...+++.-...|| ||||.|+..+++.++.+.
T Consensus 65 g~~li~~~~GmRP-------GYGr~E~~iG~iiA~l~~ 95 (99)
T PF09877_consen 65 GAFLIGFPLGMRP-------GYGRIETVIGLIIALLIY 95 (99)
T ss_pred HHHHHhhhccCCC-------CCCeehhhhhHHHHHHHH
Confidence 3444555555665 999999999888766543
No 23
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=50.52 E-value=1.1e+02 Score=26.16 Aligned_cols=55 Identities=13% Similarity=-0.110 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017826 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPD 196 (365)
Q Consensus 138 ~ral~isl~~Nl~l~i~klv~G~ls~S~ALlADalhSl~D~ls~~i~L~a~rls~rp~d 196 (365)
.++.++.-.+=++.+++..+.| +.....|+.--+.-++..++.++..|.-.|...
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l~----~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~ 122 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVLG----SYLGGSELWAILGGLLGLALGFLILRLFDRRLK 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444444444444443333 322223777777777777777777776666533
No 24
>PLN02601 beta-carotene hydroxylase
Probab=46.64 E-value=3e+02 Score=27.12 Aligned_cols=44 Identities=7% Similarity=-0.096 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 017826 227 IVNGIQHLWTAEAPENMKY--AALVICGSFIIEGASLLVAIQAVKK 270 (365)
Q Consensus 227 i~esi~rL~~~~~~~~~~~--~l~v~lislvv~~~~~~~~~~~~k~ 270 (365)
+|--+..-+++++.+...+ .+++.+.+++.++...++..+..-.
T Consensus 115 ~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMH 160 (303)
T PLN02601 115 VYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEFWARWAHRALWH 160 (303)
T ss_pred HHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333345655443322 2223344666667766666655544
No 25
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=42.86 E-value=2.9e+02 Score=28.38 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=6.2
Q ss_pred HhcCCCCCCCCc
Q 017826 190 SSRRAPDALHPY 201 (365)
Q Consensus 190 ls~rp~d~~~Py 201 (365)
+-+|.|+.+.||
T Consensus 382 lr~~~~~~~rpf 393 (474)
T TIGR03813 382 LRYSQPDRPRPY 393 (474)
T ss_pred HHhcCCCCCCCe
Confidence 333445656665
No 26
>COG4035 Predicted membrane protein [Function unknown]
Probab=39.71 E-value=33 Score=28.18 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 017826 171 VVHSVADFANQV-LLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFC 220 (365)
Q Consensus 171 alhSl~D~ls~~-i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~~ 220 (365)
+..|+-|.+-.. ..+++.-..-|| ||||+|++...+.++.+.+
T Consensus 60 ~~~~v~~~~~~ag~flig~v~gMRP-------GYGR~Etv~Gt~LA~l~wL 103 (108)
T COG4035 60 WMRSVPVPLYMAGCFLIGFVLGMRP-------GYGRVETVVGTFLAVLLWL 103 (108)
T ss_pred cccCCchHHHHHHHHHHHHhhccCC-------CCceeehhHHHHHHHHHHH
Confidence 334444444333 455566666666 9999999988766655443
No 27
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=37.02 E-value=1e+02 Score=31.08 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 017826 173 HSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENM 243 (365)
Q Consensus 173 hSl~D~ls~~i~L~a~rls~rp~d~~~PyG~~R~E~Laali~av~L~~ig~~~ii~esi~rL~~~~~~~~~ 243 (365)
|=++|.+.++...++..+.+. ||+.-++|+.++++++.+|.... =++.++..-|++..||+..
T Consensus 213 HVLaDtlgSvGviist~Li~~-------~gw~~aDpicsllIailIf~sv~-PL~k~s~~iLLq~tPp~~~ 275 (354)
T KOG1484|consen 213 HVLADTLGSVGVIISTLLIKL-------FGWMIADPICSLLIAILIFLSVL-PLLKYSGKILLQRTPPHLE 275 (354)
T ss_pred HHHHHHhcchHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCChhhh
Confidence 555566666555555555443 79999999999999988776543 3567888888887766643
No 28
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=32.75 E-value=3.2e+02 Score=23.40 Aligned_cols=56 Identities=25% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHH--HhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 017826 173 HSVADFANQVLLAYGLS--SSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPEN 242 (365)
Q Consensus 173 hSl~D~ls~~i~L~a~r--ls~rp~d~~~PyG~~R~E~Laali~av~L~~ig~~~ii~esi~rL~~~~~~~~ 242 (365)
.|..-+++.+++.+.++ +-++|..+.-| + + +..-|++| ...|.++.|-..|+--.+
T Consensus 36 FSiFPlIaLvLavy~LyQ~Yl~~~m~eg~P----~------~--a~acFflG--~f~ySA~vraqyPeiGSN 93 (117)
T PF07226_consen 36 FSIFPLIALVLAVYCLYQRYLNHPMPEGTP----K------L--ALACFFLG--LFGYSAFVRAQYPEIGSN 93 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCCh----H------H--HHHHHHHH--HHHHHHHHHHhchhhhhh
Confidence 45556666666666654 55667667666 2 1 22225555 366899988877765444
No 29
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=32.59 E-value=3e+02 Score=23.78 Aligned_cols=23 Identities=13% Similarity=-0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017826 139 RAVTTALWGNFLVFSLKFGVWLG 161 (365)
Q Consensus 139 ral~isl~~Nl~l~i~klv~G~l 161 (365)
---.+++++|++++++-.+++.+
T Consensus 75 ~~~qls~v~Nilvsv~~~~~~~~ 97 (142)
T PF11712_consen 75 VKRQLSTVFNILVSVFAVFFAGW 97 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888899999888655444
No 30
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=29.97 E-value=2.4e+02 Score=28.85 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=39.4
Q ss_pred hcccccHHHHHHHHhcCCCCchhHhhhhhHHHHHHHHHHHHHHHHH-------hhCCcchhHHHHHHHHHHHHHHHHHHH
Q 017826 271 GAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVN-------VTGNAIYDPIGSIIVGNLLGMVLFFSK 343 (365)
Q Consensus 271 ~~~~~s~~l~ad~~~sd~~ts~~V~l~D~~~~~gvvla~~gl~l~~-------~~g~~~iDpi~aIlIallIl~~a~~ll 343 (365)
+-+.+|.++.+|+.| ++.|.. +.++...++++.. .+||.-+|.+++++=...|-.....++
T Consensus 93 g~~a~SLAImTDAaH---------lLsD~~---sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV 160 (379)
T KOG1482|consen 93 GYKANSLAIMTDAAH---------LLSDVA---SFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLV 160 (379)
T ss_pred CeeccchhhhhcchH---------HHHHHH---HHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhH
Confidence 346778888888876 556643 3333344444432 234555787777654444444444444
Q ss_pred HHchhhhhccCC
Q 017826 344 IINSLIHALESP 355 (365)
Q Consensus 344 ~e~ai~~lLlg~ 355 (365)
.+ |+..++.+.
T Consensus 161 ~~-Ai~Rl~s~~ 171 (379)
T KOG1482|consen 161 YE-AIQRLLSGD 171 (379)
T ss_pred HH-HHhhhhcCc
Confidence 44 455555544
No 31
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=29.46 E-value=4.4e+02 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=16.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 017826 320 NAIYDPIGSIIVGNLLGMVLFFS 342 (365)
Q Consensus 320 ~~~iDpi~aIlIallIl~~a~~l 342 (365)
.|.+.|.+.+++++..+..-+-+
T Consensus 175 np~l~~~~~iiig~i~~~~~~~l 197 (206)
T PF06570_consen 175 NPVLPPWVYIIIGVIAFALRFYL 197 (206)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHH
Confidence 36688999998887776655433
No 32
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=28.81 E-value=1.1e+02 Score=22.24 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=18.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 017826 196 DALHPYGYSKERFVWSLISAVGIFCLGS 223 (365)
Q Consensus 196 d~~~PyG~~R~E~Laali~av~L~~ig~ 223 (365)
++.|.|-|..+.. ++++.+.+++++|+
T Consensus 4 ~~pF~YDy~tLri-gGLi~A~vlfi~Gi 30 (50)
T PF02038_consen 4 DDPFYYDYETLRI-GGLIFAGVLFILGI 30 (50)
T ss_dssp CSGGGGCHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCCccchhHhhc-cchHHHHHHHHHHH
Confidence 4667788887754 55666777777775
No 33
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=28.71 E-value=3e+02 Score=21.87 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 017826 171 VVHSVADFANQVLLAYGLSSSRRAPDALHPY 201 (365)
Q Consensus 171 alhSl~D~ls~~i~L~a~rls~rp~d~~~Py 201 (365)
.+-...-+...+...++...+.+..+.+||+
T Consensus 74 ~~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 74 LLLIVLWLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCeeecCe
Confidence 3444444555667777888888888888885
No 34
>COG2056 Predicted permease [General function prediction only]
Probab=26.25 E-value=7.4e+02 Score=25.61 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=6.7
Q ss_pred CCCCCCcchhH
Q 017826 195 PDALHPYGYSK 205 (365)
Q Consensus 195 ~d~~~PyG~~R 205 (365)
|----|+|+|.
T Consensus 158 pYi~LPvGFG~ 168 (444)
T COG2056 158 PYILLPVGFGL 168 (444)
T ss_pred ceeEecchHHH
Confidence 33445777776
No 35
>PF15050 SCIMP: SCIMP protein
Probab=25.79 E-value=1.2e+02 Score=26.24 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017826 246 AALVICGSFIIEGASLLVAIQAVKKGAA 273 (365)
Q Consensus 246 ~l~v~lislvv~~~~~~~~~~~~k~~~~ 273 (365)
+.+++++++++..+++-+|++..|+|++
T Consensus 13 AVaII~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 13 AVAIILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3344445666666666667877887753
No 36
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=21.54 E-value=88 Score=22.49 Aligned_cols=18 Identities=17% Similarity=0.371 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHHHH
Q 017826 321 AIYDPIGSIIVGNLLGMV 338 (365)
Q Consensus 321 ~~iDpi~aIlIallIl~~ 338 (365)
.++||+.++++++.-.+.
T Consensus 5 r~lDP~~av~iG~~ayyl 22 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSAYYL 22 (47)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 368999999998865543
No 37
>PRK11380 hypothetical protein; Provisional
Probab=20.65 E-value=9e+02 Score=24.57 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=10.2
Q ss_pred HhcCCCCCCCCcc
Q 017826 190 SSRRAPDALHPYG 202 (365)
Q Consensus 190 ls~rp~d~~~PyG 202 (365)
+-.+|.+++||+-
T Consensus 6 lqn~p~~~~~~~~ 18 (353)
T PRK11380 6 LQNHPGSEKYPVN 18 (353)
T ss_pred hhcCCCcccCCcc
Confidence 4567899999984
No 38
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=20.04 E-value=5.9e+02 Score=26.32 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=42.9
Q ss_pred cccccHHHHHHHHhcCCCCchhHhhhhhHHHHHHHHHHHHHHHHH-------hhCCcchhHHHHHHHHHHHHHHHHHHHH
Q 017826 272 AAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVN-------VTGNAIYDPIGSIIVGNLLGMVLFFSKI 344 (365)
Q Consensus 272 ~~~~s~~l~ad~~~sd~~ts~~V~l~D~~~~~gvvla~~gl~l~~-------~~g~~~iDpi~aIlIallIl~~a~~ll~ 344 (365)
--.++.++.+|..| ++.|.+++++. +.++=.+. -.||...|-.++++=+++..-.-+.++.
T Consensus 30 yv~~sLaLiadSfH---------ML~dIiaLiva---f~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~ 97 (404)
T KOG1483|consen 30 YVTNSLALIADSFH---------MLNDIIALIVA---FWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILI 97 (404)
T ss_pred cccchHHHHhhHHH---------HHHHHHHHHHH---HHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34678889999886 56675543332 22222221 2367778999999998888888888888
Q ss_pred Hc
Q 017826 345 IN 346 (365)
Q Consensus 345 e~ 346 (365)
|.
T Consensus 98 EA 99 (404)
T KOG1483|consen 98 EA 99 (404)
T ss_pred HH
Confidence 76
Done!