RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017826
(365 letters)
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 85.8 bits (213), Expect = 4e-19
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 15/183 (8%)
Query: 150 LVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFV 209
L+ +K L T S +LA+ +HS+ D + +L L S R PD HP+G+ + +
Sbjct: 1 LLALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPL 60
Query: 210 WSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVK 269
+LI ++ + +G + I+ L + E E + + S ++ L +A +
Sbjct: 61 AALIVSLLLLGVG-VFILYESIERLISPEEIEPGGILLVAL-ISLVVNLLLALYLRRAGR 118
Query: 270 KGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSI 329
K A V G + L+ + +TG I DP+ S+
Sbjct: 119 KI-------------GKKSSALRADALHALVDVLGSLAVLIGLLLILLTGLPIADPLASL 165
Query: 330 IVG 332
++
Sbjct: 166 LIA 168
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 85.8 bits (213), Expect = 6e-19
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDA 197
+RA +L N + LK + T S +LA+ +HS++D +++ GL S + PD
Sbjct: 12 RRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDR 71
Query: 198 LHPYGYSKERFVWSLISAVGIFCLGSGATI-VNGIQHLWTAEAPENMKYAALVICGSFII 256
HPYG+ K + SLI V I +G I + I+ L + + E A V S +I
Sbjct: 72 DHPYGHGKAETLASLI--VSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVI 129
Query: 257 EGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGA-----AVTGLVIAGAS 311
+ A + KK S A++ D +T L +
Sbjct: 130 KEALYRYLRRVGKKT------------------NSQALIA-DALHHRSDVLTSLAVLVG- 169
Query: 312 LIAVNVTGNAIYDPIGSIIVGNLLGMVLF--FSKIINSLI-HALESPEVGNLHMIVR 365
+ ++ G DP+ ++++ + F F + +N L+ AL+ ++ + I+
Sbjct: 170 -LLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIIL 225
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 68.4 bits (168), Expect = 4e-13
Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 21/218 (9%)
Query: 154 LKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDALHPYGYSKERFVWSLI 213
+K L + S +LA+ +HS++D A + L SRR D HP+G+ + + +L+
Sbjct: 5 IKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALL 64
Query: 214 SAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKK--- 270
+ + + + + + I+ L E + +V I+ L + +
Sbjct: 65 NGLFLV-VVALFILYEAIERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRVGHRLGS 123
Query: 271 ----GAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGAS---LIAVNVTGNAIY 323
AA ++ D + +SV V+ G A LI++ + A
Sbjct: 124 LALRAAALHVLS--DAL------SSVGVLIGALLIYFGWHWADPIAALLISLLILYTAF- 174
Query: 324 DPIGSIIVGNLLGMVLFFSKIINSLIHALESPEVGNLH 361
+ + LL + L P V +H
Sbjct: 175 -RLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVH 211
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 37.0 bits (86), Expect = 0.012
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 134 DEHSQRAVTTALWGNFLVFSL----KFGVWLGTSSHVMLAEVVHSVADFA----NQVLLA 185
++ R V+ A + SL K W T S +LA +V S+ D A N +++
Sbjct: 2 NQSYARLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVR 61
Query: 186 YGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGA-TIVNGIQHLWTAEAPENMK 244
Y L + D H +G+ K + +L A +F GS + GIQHL + P M
Sbjct: 62 YSL----QPADDEHTFGHGKAESLAAL--AQSMFISGSALFLFLTGIQHLIS---PTPMN 112
Query: 245 YAALVI 250
+ I
Sbjct: 113 DPGVGI 118
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 36.1 bits (84), Expect = 0.020
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 27/200 (13%)
Query: 137 SQRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQV--LLAYGLSSSRRA 194
++R + AL N ++ L T S +LA+ +H ++D + L+A L+ RR
Sbjct: 20 NERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLA--RRP 77
Query: 195 PDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPEN--MKYAALVICG 252
+GY + + + ++A+ + + S + IQ L M A++
Sbjct: 78 ATKRFTFGYKRLEILAAFLNALLLI-VVSLLILWEAIQRLLAPPPIHYSGMLVVAII--- 133
Query: 253 SFIIEGASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASL 312
++ S L+ + KG E + +R H + D G++IA
Sbjct: 134 GLVVNLVSALL----LHKG-HEENLNMRGAYL--H-------VLGDALGSVGVIIAA--- 176
Query: 313 IAVNVTGNAIYDPIGSIIVG 332
I + TG + DPI SI++
Sbjct: 177 IVIRFTGWSWLDPILSIVIA 196
>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators
having an N-terminal Type 1 glutamine amidotransferase
(GATase1)-like domain. A subgroup of AraC
transcriptional regulators having an N-terminal Type 1
glutamine amidotransferase (GATase1)-like domain. This
group contains proteins similar to the Pseudomonas
aeruginosa ArgR regulator. ArgR functions in the
control of expression of certain genes of arginine
biosynthesis and catabolism. AraC regulators are defined
by a AraC-type helix-turn-helix DNA binding domain at
their C-terminal. AraC family transcriptional
regulators are widespread among bacteria and are
involved in regulating diverse and important biological
functions, including carbon metabolism, stress responses
and virulence in different microorganisms. The catalytic
triad typical of GATase1 domains is not conserved in
this GATase1-like domain. However, in common with
typical GATase1domains a reactive cys residue is found
in some sequences in the sharp turn between a beta
strand and an alpha helix termed the nucleophile elbow.
Length = 185
Score = 30.6 bits (70), Expect = 0.75
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 206 ERFVWSLISAVGIFCLGSGATIV--NGIQHLWTAEAPENMKYAALVICGSFIIEGASLLV 263
E + W ++S GA + NG++ A + L + G ++
Sbjct: 31 ELYRWRVLSL-------DGAPVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGAR-RAVTP 82
Query: 264 AIQAVKKGAAAEGMTI 279
A+ A + AA G+ +
Sbjct: 83 ALLAWLRRAARRGVAL 98
>gnl|CDD|185054 PRK15099, PRK15099, O-antigen translocase; Provisional.
Length = 416
Score = 30.8 bits (70), Expect = 1.4
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 37/143 (25%)
Query: 212 LISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIEGASLLVAIQAVKKG 271
LI+ +G+ +GA I NG+ + + A+V S ++ G S L+A+
Sbjct: 46 LITVLGVL---AGAGIFNGVTKYVAQYHDQPQQLRAVVGTSSAMVLGFSTLLAL------ 96
Query: 272 AAAEGMTIRDYIWRGHDPTSVAVMTEDG-------AAVTGLVIAGASL-IAV-----NVT 318
P S + A+ + IA A+L +A+ +
Sbjct: 97 ----------VFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAA 146
Query: 319 GNAIYDPIGSIIVGNLLGMVLFF 341
GNA+ S+IVG+L+G+ ++
Sbjct: 147 GNAL-----SLIVGSLIGVAAYY 164
>gnl|CDD|220762 pfam10452, TCO89, TORC1 subunit TCO89. TC089 is a component of the
TORC1 complex. TORC1 is responsible for a wide range of
rapamycin-sensitive cellular activities.
Length = 459
Score = 29.9 bits (67), Expect = 2.1
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 97 LLGLVSFDNSGSNQHHKYSSNRN---FFTRAKQVKKIETTDEHSQRA----VTTALW 146
L + + + QH S N F T Q K + ++Q A + T +W
Sbjct: 389 LTRVSNQSSISKKQHKDSQSGFNSSSFGTYQDQAKTFDELIPNAQNAKIQRILTGIW 445
>gnl|CDD|132655 TIGR03616, RutG, pyrimidine utilization transport protein G. This
protein is observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the uracil-xanthine permease
family defined by TIGR00801. As well as the The
Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Length = 429
Score = 29.0 bits (65), Expect = 3.8
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 273 AAEGMTIRD---YIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSI 329
A GMT R+ Y+ R +A M TG+ ++ + VT +Y +
Sbjct: 269 AVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVT--KVYSTL-VF 325
Query: 330 IVGNLLGMVLFFSKIINSLIHALESPEVGNLHMIV 364
+ + ++L FS +LIH + +G ++V
Sbjct: 326 VAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVV 360
>gnl|CDD|181087 PRK07701, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 298
Score = 28.8 bits (65), Expect = 4.5
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 282 YIWRGHDPTSVAVMTEDG-----AAVTGLV---IAGASLIAVNVTGNAIYDPIGSIIVGN 333
YI+ G T +T+DG + +G + IA + I VNV G+ + S N
Sbjct: 133 YIFNGTK-TDTPPVTDDGDNIENSTDSGDIEFEIAKGNTINVNVPGDKAFG-GQSGGGSN 190
Query: 334 LLGMVLFFSKIINSLIHALESPE 356
L M +++L +AL+S +
Sbjct: 191 LFEM-------LDNLENALDSGD 206
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 29.1 bits (66), Expect = 4.6
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 287 HDPTSVAVMTEDGAAVTGLVIAGASLIAVNV 317
D + V+ DGA + GL AG A +
Sbjct: 434 VDEDTGEVLRADGAPIPGLYAAGRC--ASGI 462
>gnl|CDD|151542 pfam11098, Chlorosome_CsmC, Chlorosome envelope protein C.
Chlorosomes are light-harvesting antennae found in green
bacteria. CsmC is one of the proteins that exists in the
chlorosome envelope. CsmC has been shown to exist as a
homomultimer with CsmD in the chlorosome envelope. CsmC
is thought to be important in chlorosome elongation and
shape.
Length = 139
Score = 27.5 bits (61), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 293 AVMTEDGAAVTGLVIAGASLIAVNVTGNAIYDPIGSIIVGNLLG 336
++T A V GL +AG+ + V T ++ D G +G LLG
Sbjct: 28 VLLTGQSAVVGGLELAGSVVETVAGTVGSLIDATG---IGRLLG 68
>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase;
Provisional.
Length = 380
Score = 28.1 bits (63), Expect = 8.3
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 262 LVAIQAVKKGAAAEGM---------TIRDYIWRGHDPTSVAVMTEDGAA 301
L+ ++ K A G+ +I +Y+WR P +V+V E A
Sbjct: 232 LIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAAC 280
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,641,586
Number of extensions: 1818198
Number of successful extensions: 1826
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1820
Number of HSP's successfully gapped: 40
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.2 bits)