RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017826
         (365 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 64.8 bits (157), Expect = 6e-13
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 17/198 (8%)

Query: 138 QRAVTTALWGNFLVFSLKFGVWLGTSSHVMLAEVVHSVADFANQVLLAYGLSSSRRAPDA 197
            RA   A     L+  +K   W  T S  +LA +V S+ D    +     +  S +  D 
Sbjct: 6   SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD 65

Query: 198 LHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALVICGSFIIE 257
            H +G+ K   + +L  ++ I      + +   +  +    +P  M    + +  + +  
Sbjct: 66  NHSFGHGKAESLAALAQSMFISG----SALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 121

Query: 258 GASLLVAIQAVKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAVTGLVIAGASLIAVNV 317
             ++++           +   +R          +  +  +    + G ++    L     
Sbjct: 122 ICTIILVSFQRWVVRRTQSQAVR----------ADMLHYQSDVMMNGAILLALGLSW--- 168

Query: 318 TGNAIYDPIGSIIVGNLL 335
            G    D + ++ +G  +
Sbjct: 169 YGWHRADALFALGIGIYI 186


>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 103

 Score = 28.4 bits (63), Expect = 0.56
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 268 VKKGAAAEGMTIRDYIWRGHDPTSVAVMTEDGAAV-TGLVIAGASLIAVN 316
           VKK AA  G+ I            +  +   G+A   G +  G  ++ VN
Sbjct: 12  VKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVN 61


>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite
           (Plasmodium falciparum) [TaxId: 5833]}
          Length = 179

 Score = 26.2 bits (57), Expect = 4.8
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 65  FINDNNGKFFSILEHTNQFRGFCSVHCSKRFVLL 98
           +I+D N  F   +        F       RFV +
Sbjct: 107 YISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAI 140


>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 278

 Score = 26.1 bits (56), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 247 ALVICGSFIIEGASLLVAIQAVKKGA 272
            L+I GS +  GA +L  + ++K G 
Sbjct: 24  VLIIAGSRLYSGAPVLSGMGSLKVGT 49


>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal
           DNA-binding domain {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 24.8 bits (54), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 58  PSSPFNVFINDNNGKFFSILEHTNQFRGF 86
           P +P+ V  N N G+  S++EH  Q   F
Sbjct: 75  PGTPYWVITNTNTGRKCSMIEHIMQSMQF 103


>d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 182

 Score = 25.4 bits (55), Expect = 9.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 220 CLGSGATIVNGIQHLWTAEAPENMKYAALV 249
            L SG ++ + +  L     P  ++ A LV
Sbjct: 110 VLYSGRSVRSALDALRDVGRPRAVQLAVLV 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,312,905
Number of extensions: 59175
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 14
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)