BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017827
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 2/160 (1%)
Query: 13 QMDLPPGFRFHPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKNEPWELPWKAKMGEKEW 72
Q+ LPPGFRF+PTDEEL+ YL +K FS + I ++DL K +PW LP KA GEKEW
Sbjct: 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEW 73
Query: 73 YFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKS 132
YFF RDRKYP G R NR SGYWKATG DK I VG+KK LVFY G+APKG K+
Sbjct: 74 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133
Query: 133 SWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQKGSGGKR 172
+W+MHEYRL + T ++WVLCR+++K S ++
Sbjct: 134 NWIMHEYRLIEPSRRNG--STKLDDWVLCRIYKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 2/160 (1%)
Query: 13 QMDLPPGFRFHPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKNEPWELPWKAKMGEKEW 72
Q+ LPPGFRF+PTDEEL+ YL +K FS + I ++DL K +PW LP KA GEKEW
Sbjct: 17 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEW 76
Query: 73 YFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKS 132
YFF RDRKYP G R NR SGYWKATG DK I VG+KK LVFY G+APKG K+
Sbjct: 77 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 136
Query: 133 SWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQKGSGGKR 172
+W+MHEYRL + T ++WVLCR+++K S ++
Sbjct: 137 NWIMHEYRLIEPSRRNG--STKLDDWVLCRIYKKQSSAQK 174
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 107/158 (67%), Gaps = 5/158 (3%)
Query: 13 QMDLPPGFRFHPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKNEPWELPWKAKMGEKEW 72
+++LPPGFRFHPTD+EL+ HYL +K I +VDL K +PW+LP +A G +EW
Sbjct: 12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREW 71
Query: 73 YFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIY-RGKSLVGMKKTLVFYRGRAPKGEK 131
YFF RDRKYP G R NRA +GYWKATG DK + RG++L G+KK LVFY G+AP+G K
Sbjct: 72 YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTL-GIKKALVFYAGKAPRGVK 130
Query: 132 SSWVMHEYRLDGKFSVHSLPKTAK---NEWVLCRVFQK 166
+ W+MHEYRL + K ++WVLCR++ K
Sbjct: 131 TDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|1UZ6|F Chain F, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|H Chain H, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|P Chain P, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|W Chain W, Anti-Lewis X Fab Fragment Uncomplexed
Length = 217
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 247 SVSSNCPDVFPRIPLSSNSFYSPLSVPVPSHAQFPGSVFMQ-DHSILRALIENQGSNMSQ 305
S ++ P V+P +P S++ S +++ FP V ++ ++ L + + S +
Sbjct: 117 SATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQS 176
Query: 306 SFKTEREMISVSQDTGLTADMNPEISSVVSNLEMVKR 342
F + +++V T + + ++ S E++KR
Sbjct: 177 GFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKR 213
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine
Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine
Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 17 PPGFRFHPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKN 56
PP F +H D++L+ + +Y ++ +C +GD + ++
Sbjct: 26 PPLFDYHRIDQKLLQNIVYDALVWSTLNCLLVGDKSVQRS 65
>pdb|3GNM|H Chain H, The Crystal Structure Of The Jaa-f11 Monoclonal Antibody
Fab Fragment
Length = 223
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 247 SVSSNCPDVFPRIPLSSNSFYSPLSVPVPSHAQFPGSVFMQ-DHSILRALIENQGSNMSQ 305
S ++ P V+P +P S++ S +++ FP V ++ ++ L + + S +
Sbjct: 118 SATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQS 177
Query: 306 SFKTEREMISVSQDTGLTADMNPEISSVVSNLEMVKR 342
F + +++V T + + ++ S E++KR
Sbjct: 178 GFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKR 214
>pdb|1M71|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
Length = 220
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/98 (18%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 247 SVSSNCPDVFPRIPLSSNSFYSPLSVPVPSHAQFPGSVFMQ-DHSILRALIENQGSNMSQ 305
S ++ P V+P +P S++ S +++ FP V ++ ++ L + + S +
Sbjct: 120 SATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQS 179
Query: 306 SFKTEREMISVSQDTGLTADMNPEISSVVSNLEMVKRP 343
F + +++V T + + ++ S ++++K P
Sbjct: 180 GFYSLSSLVTVPSSTWPSQTVICNVAHPASKVDLIKEP 217
>pdb|1R24|B Chain B, Fab From Murine Igg3 Kappa
pdb|1R24|D Chain D, Fab From Murine Igg3 Kappa
Length = 217
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 247 SVSSNCPDVFPRIPLSSNSFYSPLSVPVPSHAQFPGSVFMQ-DHSILRALIENQGSNMSQ 305
S ++ P V+P +P S++ S +++ FPG V ++ ++ L + + S +
Sbjct: 122 SATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPGPVTVKWNYGALSSGVRTVSSVLQS 181
Query: 306 SFKTEREMISVSQDTGLTADMNPEISSVVSNLEMVK 341
F + +++V T + + ++ S +++K
Sbjct: 182 GFYSLSSLVTVPSSTWPSQTVICNVAHPASKTDLIK 217
>pdb|2VQ1|B Chain B, Anti Trimeric Lewis X Fab54-5c10-A
pdb|2VQ1|F Chain F, Anti Trimeric Lewis X Fab54-5c10-A
Length = 218
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 247 SVSSNCPDVFPRIPLSSNSFYSPLSVPVPSHAQFPGSVFMQ-DHSILRALIENQGSNMSQ 305
S ++ P V+P +P S++ S +++ FP V ++ ++ L + + S +
Sbjct: 118 SATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQS 177
Query: 306 SFKTEREMISVSQDTGLTADMNPEISSVVSNLEMVKR 342
F + +++V T + + ++ S E++KR
Sbjct: 178 GFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKR 214
>pdb|3VFG|H Chain H, Crystal Structure Of Monoclonal Anitbody 3f8 Fab Fragment
That Binds To Gd2 Ganglioside
Length = 219
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 247 SVSSNCPDVFPRIPLSSNSFYSPLSVPVPSHAQFPGSVFMQ-DHSILRALIENQGSNMSQ 305
S S+ P V+P +P S++ S +++ FP V ++ ++ L + + S +
Sbjct: 119 SASTKGPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQS 178
Query: 306 SFKTEREMISVSQDTGLTADMNPEISSVVSNLEMVKR 342
F + +++V T + + ++ S E++KR
Sbjct: 179 GFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKR 215
>pdb|3TPE|A Chain A, The Phipa P3121 Structure
pdb|3TPV|B Chain B, Structure Of Phipa Bound To Adp
Length = 440
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|3TPB|A Chain A, Structure Of Hipa(S150a)
Length = 440
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|3FBR|A Chain A, Structure Of Hipa-Amppnp-Peptide
Length = 437
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|3TPT|A Chain A, Structure Of Hipa(D309q) Bound To Adp
pdb|3TPT|B Chain B, Structure Of Hipa(D309q) Bound To Adp
Length = 440
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|3TPD|A Chain A, Structure Of Phipa, Monoclinic Form
Length = 440
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|3DNV|A Chain A, Mdt Protein
Length = 440
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|2WIU|A Chain A, Mercury-Modified Bacterial Persistence Regulator Hipba
pdb|2WIU|C Chain C, Mercury-Modified Bacterial Persistence Regulator Hipba
Length = 446
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|3HZI|A Chain A, Structure Of Mdt Protein
Length = 440
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|3DNT|A Chain A, Structures Of Mdt Proteins
pdb|3DNT|B Chain B, Structures Of Mdt Proteins
pdb|3DNU|A Chain A, Structure Of Mdt Protein
Length = 440
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 NGSKTIKSVAD---SAYVSCFSNSIDLQRNQKTTTTIENFFNNPPP 245
NG+ T K + S Y S S+ LQR T+ + NFF+N P
Sbjct: 21 NGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLP 66
>pdb|3OBE|A Chain A, Crystal Structure Of A Sugar Phosphate IsomeraseEPIMERASE
(BDI_3400) From Parabacteroides Distasonis Atcc 8503 At
1.70 A Resolution
pdb|3OBE|B Chain B, Crystal Structure Of A Sugar Phosphate IsomeraseEPIMERASE
(BDI_3400) From Parabacteroides Distasonis Atcc 8503 At
1.70 A Resolution
Length = 305
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 286 MQDHSILRALIENQGSNMSQSFK---TEREMISVSQDTGLTADMNPEISSVVSNLEMVK- 341
+Q +S+ + L+++ + +++ K T+ E+ +DTG D NP+ ++ +++ + K
Sbjct: 25 LQTYSLGQELLQDXPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKX 84
Query: 342 ------RPFNDHDAPS----TSAGPVDFDCFW 363
R + H PS T FD FW
Sbjct: 85 VDDAGLRISSSHLTPSLREYTKENXPKFDEFW 116
>pdb|1CLZ|H Chain H, Igg Fab (Igg3, Kappa) Fragment (Mbr96) Complexed With
Lewis Y Nonoate Methyl Ester
Length = 218
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 253 PDVFPRIPLSSNSFYSPLSVPVPSHAQFPGSVFMQ-DHSILRALIENQGSNMSQSFKTER 311
P V+P +P S++ S +++ FP V ++ ++ L + + S + F +
Sbjct: 124 PSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLS 183
Query: 312 EMISVSQDTGLTADMNPEISSVVSNLEMVKR 342
+++V T + + ++ S E++KR
Sbjct: 184 SLVTVPSSTWPSQTVICNVAHPASKTELIKR 214
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 22/97 (22%)
Query: 17 PPGFRFHPTDEELITHYL-------YKKVLDVCFSCRAIG----DVDLNKNEPWELPWKA 65
P G R HP +E H+L K+ ++ F RA +++ PWE+P
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIP--- 71
Query: 66 KMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGK 102
++W+ + G T+ + G W GK
Sbjct: 72 ---RRDWF-----PPSFLFGAATSAYQIEGAWNEDGK 100
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 22/97 (22%)
Query: 17 PPGFRFHPTDEELITHYL-------YKKVLDVCFSCRAIG----DVDLNKNEPWELPWKA 65
P G R HP +E H+L K+ ++ F RA +++ PWE+P
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIP--- 71
Query: 66 KMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGK 102
++W+ + G T+ + G W GK
Sbjct: 72 ---RRDWF-----PPSFLFGAATSAYQIEGAWNEDGK 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,331,441
Number of Sequences: 62578
Number of extensions: 471399
Number of successful extensions: 920
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 36
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)