Query 017827
Match_columns 365
No_of_seqs 240 out of 1009
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.7E-59 9.3E-64 422.5 15.5 159 10-168 9-170 (174)
2 1ut7_A No apical meristem prot 100.0 6.5E-59 2.2E-63 418.9 13.1 159 11-171 12-170 (171)
3 1ldd_A APC2WHB, anaphase promo 23.6 41 0.0014 26.0 2.2 26 17-43 37-63 (74)
4 2c4b_A Barnase mcoeeti fusion; 21.9 58 0.002 28.2 3.1 61 25-99 4-72 (143)
5 1cmb_A Met APO-repressor; DNA- 20.4 80 0.0027 25.5 3.3 39 23-65 50-88 (104)
6 4dox_A Coat protein; all helix 18.1 63 0.0021 30.0 2.6 30 9-38 148-177 (226)
7 2oh5_A Polyhedrin, C-polyhedri 14.0 90 0.0031 28.0 2.4 27 94-120 140-167 (248)
8 1na6_A Ecorii, restriction end 9.8 2.2E+02 0.0077 28.5 4.0 43 116-163 79-123 (404)
9 3nr5_A MAF1, repressor of RNA 9.3 1E+02 0.0034 27.2 1.1 13 47-59 118-130 (164)
10 3dz1_A Dihydrodipicolinate syn 7.9 1.6E+02 0.0055 27.7 2.0 20 13-34 106-125 (313)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.7e-59 Score=422.45 Aligned_cols=159 Identities=49% Similarity=0.979 Sum_probs=138.8
Q ss_pred CCCCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCcCceecccCCCCCCCCCCccccCCCceEEEEeeccccCCCCCCcc
Q 017827 10 EDDQMDLPPGFRFHPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTN 89 (365)
Q Consensus 10 ~~~~~~LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePWdLP~~a~~GekeWYFFs~r~rKy~~G~R~n 89 (365)
.+.++.|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..|+++|||||+|++||++|.|+|
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence 35688999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred cccCCceeeecCCCceEeeCCceeEeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCCC---CCcCCCCcEEEEEEEEc
Q 017827 90 RATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHS---LPKTAKNEWVLCRVFQK 166 (365)
Q Consensus 90 Rat~~GyWKatGk~k~I~~~g~lVG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~---lp~~~~~e~VLCRIf~K 166 (365)
|+|++||||+||++++|..++.+||+||+|+||.|++|+|.||+|+||||+|.+...... ......++|||||||+|
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 999999999999999999889999999999999999999999999999999987642211 11123589999999998
Q ss_pred CC
Q 017827 167 GS 168 (365)
Q Consensus 167 ~~ 168 (365)
+.
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.5e-59 Score=418.87 Aligned_cols=159 Identities=55% Similarity=0.970 Sum_probs=135.0
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCcCceecccCCCCCCCCCCccccCCCceEEEEeeccccCCCCCCccc
Q 017827 11 DDQMDLPPGFRFHPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNR 90 (365)
Q Consensus 11 ~~~~~LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePWdLP~~a~~GekeWYFFs~r~rKy~~G~R~nR 90 (365)
..++.|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..|+++|||||++++||++|.|++|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence 46789999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred ccCCceeeecCCCceEeeCCceeEeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCCCCCcCCCCcEEEEEEEEcCCCC
Q 017827 91 ATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQKGSGG 170 (365)
Q Consensus 91 at~~GyWKatGk~k~I~~~g~lVG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCRIf~K~~~~ 170 (365)
+|++||||+||++++|..++.+||+||+|+||+|++|+|.||+|+||||+|..... .......++|||||||+|+.+.
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEECC---
T ss_pred cCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--ccCcccCCCEEEEEEEEcCCCC
Confidence 99999999999999999989999999999999999999999999999999987541 1112345899999999998654
Q ss_pred C
Q 017827 171 K 171 (365)
Q Consensus 171 k 171 (365)
+
T Consensus 170 ~ 170 (171)
T 1ut7_A 170 Q 170 (171)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=23.58 E-value=41 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCCceeCC-ChHHHHHHHHHHhhcCCCC
Q 017827 17 PPGFRFHP-TDEELITHYLYKKVLDVCF 43 (365)
Q Consensus 17 PpGfRF~P-TDEELI~~YL~~Kv~g~~~ 43 (365)
|.|+.|.. |++||-. ||.+|+....+
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 67899998 8888886 99999988754
No 4
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=21.89 E-value=58 Score=28.24 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCcCceec--ccCCCCCCCC------CCccccCCCceEEEEeeccccCCCCCCcccccCCce
Q 017827 25 TDEELITHYLYKKVLDVCFSCRAIGD--VDLNKNEPWE------LPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGY 96 (365)
Q Consensus 25 TDEELI~~YL~~Kv~g~~~~~~~I~e--vDly~~ePWd------LP~~a~~GekeWYFFs~r~rKy~~G~R~nRat~~Gy 96 (365)
|+.+-|..||.. ...+|...|.. ++--..+|-+ +|+++..|+. |.-+++.-|. ..+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v----F~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE----ECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce----EecCCCcCCC-------CCCCE
Confidence 556667789876 34467666654 4556777754 4655443332 5555444442 23678
Q ss_pred eee
Q 017827 97 WKA 99 (365)
Q Consensus 97 WKa 99 (365)
|+.
T Consensus 70 y~E 72 (143)
T 2c4b_A 70 WRE 72 (143)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=20.36 E-value=80 Score=25.54 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCcCceecccCCCCCCCCCCccc
Q 017827 23 HPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKNEPWELPWKA 65 (365)
Q Consensus 23 ~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePWdLP~~a 65 (365)
|-|--||+|.-...-..|+|+|. +-||-+..|-++|+.+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 67889999987778889999984 6799999999999765
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=18.10 E-value=63 Score=29.97 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCceeCCChHHHHHHHHHHhh
Q 017827 9 KEDDQMDLPPGFRFHPTDEELITHYLYKKV 38 (365)
Q Consensus 9 ~~~~~~~LPpGfRF~PTDEELI~~YL~~Kv 38 (365)
.....+.-+-|..+.||++|+|.|=..+++
T Consensus 148 ~n~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 148 ENPAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TCTTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred CCccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 334445555599999999999998665554
No 7
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=14.01 E-value=90 Score=27.98 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=21.7
Q ss_pred CceeeecCCC-ceEeeCCceeEeEEEEE
Q 017827 94 SGYWKATGKD-KEIYRGKSLVGMKKTLV 120 (365)
Q Consensus 94 ~GyWKatGk~-k~I~~~g~lVG~KKtLv 120 (365)
+--|.+||-. |.|..+|++||+...|.
T Consensus 140 shpweatgikyrki~~dgeivgyshyfe 167 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFE 167 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEE
T ss_pred cCCccccCceEEEeeecceEeeeeeeee
Confidence 3469999864 77888999999987764
No 8
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=9.83 E-value=2.2e+02 Score=28.46 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=28.3
Q ss_pred EEEEEEeeccCCCCCCcCeEEEEEEeC--CCCCCCCCCcCCCCcEEEEEE
Q 017827 116 KKTLVFYRGRAPKGEKSSWVMHEYRLD--GKFSVHSLPKTAKNEWVLCRV 163 (365)
Q Consensus 116 KKtLvFY~Grapkg~KT~WvMhEYrL~--~~~~~~~lp~~~~~e~VLCRI 163 (365)
.-++++|..|..++.|. ||||. ....+.-......+-+||++.
T Consensus 79 d~~~twYn~R~~~~tRn-----EyRLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 79 EARAIYYNSAHFGKTRN-----EKRITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEEEECGGGTTSCCC-----EEEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEEEecccccCCCCC-----ceEEeecCCCCcccccCCCCCEEEEEEe
Confidence 67899999887777777 88988 543222223333455788865
No 9
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=9.27 E-value=1e+02 Score=27.23 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=11.0
Q ss_pred ceecccCCCCCCC
Q 017827 47 AIGDVDLNKNEPW 59 (365)
Q Consensus 47 ~I~evDly~~ePW 59 (365)
.+.++|||.+.|-
T Consensus 118 ~l~dC~IYsY~Pd 130 (164)
T 3nr5_A 118 CLAECDIYSYNPD 130 (164)
T ss_dssp CGGGCEEEEECCC
T ss_pred CccCCeEEEEcCC
Confidence 3678899999998
No 10
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=7.86 E-value=1.6e+02 Score=27.66 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=15.0
Q ss_pred CCCCCCCceeCCChHHHHHHHH
Q 017827 13 QMDLPPGFRFHPTDEELITHYL 34 (365)
Q Consensus 13 ~~~LPpGfRF~PTDEELI~~YL 34 (365)
-+-+||- |.||+++|+.||-
T Consensus 106 vlv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 106 VMIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EEECCCT--TCCSHHHHHHHHH
T ss_pred EEECCCC--CCCCHHHHHHHHH
Confidence 3456774 5699999999875
Done!