Query 017827
Match_columns 365
No_of_seqs 240 out of 1009
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 05:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017827.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017827hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut7a_ b.143.1.1 (A:) No apic 100.0 1.2E-54 9E-59 385.6 13.1 156 10-167 11-166 (166)
2 d1cmca_ a.43.1.5 (A:) Met repr 22.9 31 0.0023 26.0 3.3 39 23-65 50-88 (104)
3 d1ldda_ a.4.5.34 (A:) Anaphase 14.0 44 0.0032 24.0 2.2 27 16-43 36-63 (74)
4 d1o5ka_ c.1.10.1 (A:) Dihydrod 11.0 43 0.0031 28.3 1.6 20 14-34 101-120 (295)
5 d1f74a_ c.1.10.1 (A:) N-acetyl 8.5 85 0.0062 26.4 2.6 20 14-34 104-123 (293)
6 d2a6na1 c.1.10.1 (A:1-292) Dih 7.3 77 0.0056 26.7 1.7 20 14-34 101-120 (292)
7 d1i27a_ a.4.5.30 (A:) C-termin 6.9 89 0.0065 22.3 1.5 15 24-38 9-23 (73)
8 d1rutx4 g.39.1.3 (X:114-146) L 6.7 64 0.0047 19.6 0.6 9 15-23 8-16 (33)
9 d1xkya1 c.1.10.1 (A:1-292) Dih 6.6 84 0.0061 26.3 1.6 20 14-34 103-122 (292)
10 d2co8a1 g.39.1.3 (A:44-76) Ned 6.2 82 0.0059 19.2 0.9 10 17-26 11-20 (33)
No 1
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=1.2e-54 Score=385.63 Aligned_cols=156 Identities=55% Similarity=0.983 Sum_probs=134.2
Q ss_pred CCCCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCcCceecccCCCCCCCCCCccccCCCceEEEEeeccccCCCCCCcc
Q 017827 10 EDDQMDLPPGFRFHPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTN 89 (365)
Q Consensus 10 ~~~~~~LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePWdLP~~a~~GekeWYFFs~r~rKy~~G~R~n 89 (365)
...++.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+....++++||||+++.+++++|.|.+
T Consensus 11 ~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~ 90 (166)
T d1ut7a_ 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN 90 (166)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred ccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccc
Confidence 46799999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred cccCCceeeecCCCceEeeCCceeEeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCCCCCcCCCCcEEEEEEEEcC
Q 017827 90 RATVSGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRLDGKFSVHSLPKTAKNEWVLCRVFQKG 167 (365)
Q Consensus 90 Rat~~GyWKatGk~k~I~~~g~lVG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCRIf~K~ 167 (365)
|+|++|+||++|+++.|..++.+||+||+|+||+|+++++.+|+|+||||+|.+..... .....++|||||||+|.
T Consensus 91 R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~--~~~~~~~~VLCrI~~Kk 166 (166)
T d1ut7a_ 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN--GSTKLDDWVLCRIYKKQ 166 (166)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEECC
T ss_pred cccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc--CccccCCEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999998754211 12345789999999984
No 2
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=22.90 E-value=31 Score=25.95 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCcCceecccCCCCCCCCCCccc
Q 017827 23 HPTDEELITHYLYKKVLDVCFSCRAIGDVDLNKNEPWELPWKA 65 (365)
Q Consensus 23 ~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePWdLP~~a 65 (365)
|-|--||+|.-...-..|+|+|. +-||-+..|-++|..+
T Consensus 50 HATNSELLCEAFLHAfTGQPLP~----D~Dl~Kd~~~~iP~~~ 88 (104)
T d1cmca_ 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCcccccHHH
Confidence 67889999987778889999984 6799999999999765
No 3
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.96 E-value=44 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCCCcee-CCChHHHHHHHHHHhhcCCCC
Q 017827 16 LPPGFRF-HPTDEELITHYLYKKVLDVCF 43 (365)
Q Consensus 16 LPpGfRF-~PTDEELI~~YL~~Kv~g~~~ 43 (365)
.|.|+.| .+|.+||-. ||..||....+
T Consensus 36 v~~~~~~~~~t~~eL~~-FL~~~V~e~kL 63 (74)
T d1ldda_ 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred cCCCCCCCCcCHHHHHH-HHHHHHhcCce
Confidence 4678888 578888876 99999998755
No 4
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=11.00 E-value=43 Score=28.32 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=15.1
Q ss_pred CCCCCCceeCCChHHHHHHHH
Q 017827 14 MDLPPGFRFHPTDEELITHYL 34 (365)
Q Consensus 14 ~~LPpGfRF~PTDEELI~~YL 34 (365)
+-+|| |.|.||++||+.||-
T Consensus 101 ~v~pP-~y~~~s~~~i~~~~~ 120 (295)
T d1o5ka_ 101 LVVTP-YYNKPTQEGLYQHYK 120 (295)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EEeCC-CCCCCCHHHHHHHHH
Confidence 34566 567899999999764
No 5
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}
Probab=8.49 E-value=85 Score=26.42 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=15.6
Q ss_pred CCCCCCceeCCChHHHHHHHH
Q 017827 14 MDLPPGFRFHPTDEELITHYL 34 (365)
Q Consensus 14 ~~LPpGfRF~PTDEELI~~YL 34 (365)
+-+||-| |.||++|++.||.
T Consensus 104 ~~~pP~~-~~~s~~~~~~~~~ 123 (293)
T d1f74a_ 104 SAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp ECCCCCS-SCCCHHHHHHHHH
T ss_pred eccCccc-cccchHHHHHHHh
Confidence 4466655 7899999999885
No 6
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}
Probab=7.34 E-value=77 Score=26.67 Aligned_cols=20 Identities=25% Similarity=0.600 Sum_probs=14.3
Q ss_pred CCCCCCceeCCChHHHHHHHH
Q 017827 14 MDLPPGFRFHPTDEELITHYL 34 (365)
Q Consensus 14 ~~LPpGfRF~PTDEELI~~YL 34 (365)
+-+||-| |.|||+||+.||-
T Consensus 101 ~~~pP~~-~~~~~~~i~~~f~ 120 (292)
T d2a6na1 101 LTVTPYY-NRPSQEGLYQHFK 120 (292)
T ss_dssp EEECCCS-SCCCHHHHHHHHH
T ss_pred eccCCCC-CCCCHHHHHHHHH
Confidence 3456644 7799999998664
No 7
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.86 E-value=89 Score=22.33 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=11.4
Q ss_pred CChHHHHHHHHHHhh
Q 017827 24 PTDEELITHYLYKKV 38 (365)
Q Consensus 24 PTDEELI~~YL~~Kv 38 (365)
+--||-|..||+||=
T Consensus 9 ~itEeaVrRYL~RKP 23 (73)
T d1i27a_ 9 QVTEDAVRRYLTRKP 23 (73)
T ss_dssp SCCHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHhhCC
Confidence 345788899998874
No 8
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.68 E-value=64 Score=19.63 Aligned_cols=9 Identities=67% Similarity=1.084 Sum_probs=6.3
Q ss_pred CCCCCceeC
Q 017827 15 DLPPGFRFH 23 (365)
Q Consensus 15 ~LPpGfRF~ 23 (365)
+|-||-|||
T Consensus 8 ~LVPGDRFH 16 (33)
T d1rutx4 8 RLVPGDRFH 16 (33)
T ss_dssp BCCTTCEEE
T ss_pred cccCCceeE
Confidence 466777776
No 9
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=6.60 E-value=84 Score=26.31 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=15.1
Q ss_pred CCCCCCceeCCChHHHHHHHH
Q 017827 14 MDLPPGFRFHPTDEELITHYL 34 (365)
Q Consensus 14 ~~LPpGfRF~PTDEELI~~YL 34 (365)
+-+|| +.|.|++++|+.||-
T Consensus 103 lv~pP-~~~~~s~~~i~~~~~ 122 (292)
T d1xkya1 103 MLVAP-YYNKPSQEGMYQHFK 122 (292)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 34566 667899999999765
No 10
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.15 E-value=82 Score=19.20 Aligned_cols=10 Identities=50% Similarity=1.089 Sum_probs=0.0
Q ss_pred CCCceeCCCh
Q 017827 17 PPGFRFHPTD 26 (365)
Q Consensus 17 PpGfRF~PTD 26 (365)
|-||++||-|
T Consensus 11 pG~Y~qhp~d 20 (33)
T d2co8a1 11 PGGYEQHPGD 20 (33)
T ss_dssp TTSEECCTTT
T ss_pred cCcccCCCCC
Done!