Query 017828
Match_columns 365
No_of_seqs 204 out of 549
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:47:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 3.6E-69 7.9E-74 492.6 0.3 215 67-357 1-215 (215)
2 PF00564 PB1: PB1 domain; Int 97.4 0.00036 7.9E-09 54.2 5.7 68 247-341 3-71 (84)
3 smart00666 PB1 PB1 domain. Pho 97.1 0.0023 5E-08 49.7 7.5 66 247-340 3-69 (81)
4 cd06398 PB1_Joka2 The PB1 doma 96.9 0.0034 7.3E-08 52.1 6.6 68 247-341 2-72 (91)
5 cd05992 PB1 The PB1 domain is 96.8 0.0071 1.5E-07 46.7 7.4 66 247-340 2-69 (81)
6 cd06407 PB1_NLP A PB1 domain i 96.8 0.0049 1.1E-07 50.1 6.7 55 247-328 2-56 (82)
7 cd06396 PB1_NBR1 The PB1 domai 96.2 0.014 3E-07 48.1 6.2 54 247-328 2-55 (81)
8 cd06401 PB1_TFG The PB1 domain 96.0 0.036 7.8E-07 45.8 7.6 74 247-345 2-79 (81)
9 cd06404 PB1_aPKC PB1 domain is 95.0 0.065 1.4E-06 44.5 5.8 56 247-329 2-57 (83)
10 cd06409 PB1_MUG70 The MUG70 pr 94.9 0.051 1.1E-06 45.1 5.1 51 255-328 7-59 (86)
11 cd06402 PB1_p62 The PB1 domain 94.9 0.098 2.1E-06 43.5 6.8 59 246-329 1-64 (87)
12 cd06403 PB1_Par6 The PB1 domai 94.6 0.083 1.8E-06 43.6 5.5 68 248-341 3-71 (80)
13 cd06397 PB1_UP1 Uncharacterize 92.9 0.34 7.3E-06 40.3 6.2 66 248-341 3-69 (82)
14 cd06408 PB1_NoxR The PB1 domai 90.5 0.83 1.8E-05 38.1 6.1 65 246-340 3-68 (86)
15 cd06399 PB1_P40 The PB1 domain 53.1 23 0.0005 30.2 4.2 37 261-325 22-58 (92)
16 PF10411 DsbC_N: Disulfide bon 46.9 15 0.00033 27.7 2.0 17 314-330 34-50 (57)
17 cd06406 PB1_P67 A PB1 domain i 43.6 1E+02 0.0022 25.7 6.4 66 246-340 3-69 (80)
18 cd06395 PB1_Map2k5 PB1 domain 35.9 65 0.0014 27.3 4.3 49 253-328 9-57 (91)
19 PF11576 DUF3236: Protein of u 29.3 20 0.00043 33.1 0.2 16 68-83 94-109 (154)
20 PF09840 DUF2067: Uncharacteri 26.8 27 0.00058 32.8 0.6 36 304-343 91-126 (190)
21 KOG3938 RGS-GAIP interacting p 26.4 96 0.0021 31.6 4.4 74 253-354 62-142 (334)
22 PF07929 PRiA4_ORF3: Plasmid p 26.2 1.6E+02 0.0034 26.5 5.4 82 246-327 5-106 (179)
23 PF09582 AnfO_nitrog: Iron onl 20.1 1.2E+02 0.0027 28.7 3.7 48 310-360 18-83 (202)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=3.6e-69 Score=492.64 Aligned_cols=215 Identities=63% Similarity=0.973 Sum_probs=6.0
Q ss_pred CCccccccccCCCCCCCcccCccccccCCCcCCCCCCCCCCCCCCCCCCCccccccCCCcchhhhccccccccccccccc
Q 017828 67 LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSEL 146 (365)
Q Consensus 67 lnlk~TELRLGLPGs~sper~~~~~~~~~~~~~~~~~fpl~p~~~~~~~~~~~~~sg~KRGFsdai~~~~egK~~~~s~~ 146 (365)
||||+|||||||||+++|+... ...++...+++||||+++|+......+...
T Consensus 1 ln~~~TELrLGLPG~~~~~~~~-------------------------~~~~~~~~~~~kR~F~~aid~~~~~~~~~~--- 52 (215)
T PF02309_consen 1 LNLKATELRLGLPGSESPDASS-------------------------SSSSKKSSSGNKRGFSEAIDSSSSNSQSSS--- 52 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchhhhhcccCCCCCCCCccc-------------------------ccccccccCcccccchhhhhhccccccccc---
Confidence 7999999999999999987211 012345578999999999986551111000
Q ss_pred cCCCCCCCCCCCCCCccccCCCccccccccccccccccCCCCCCCCccCCCCCCCCCCCCCcccCcccCCCCcccccccc
Q 017828 147 LSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNS 226 (365)
Q Consensus 147 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~p~~kaqVVGWPPIrS~RKN~ 226 (365)
.... . . .. .. .+... ......+.....|++++|+||||||++||+|.
T Consensus 53 --~~~~---------------~-~---~~----~~-~~~~~-------~~~~~~~~~~~~p~~~~~~vgwpp~~s~r~n~ 99 (215)
T PF02309_consen 53 --SSSS---------------D-S---SS----SS-SSSST-------SSSSSDSSSSSPPASKAQVVGWPPVRSFRKNS 99 (215)
T ss_dssp ------------------------------------------------------------------BTTBS----S----
T ss_pred --cccc---------------c-c---Cc----cc-ccccc-------cccccccccCCCCcccccccCCCccccccccc
Confidence 0000 0 0 00 00 00000 00011112234577889999999999999998
Q ss_pred cccccCCCccccCCCCCCcceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhcc
Q 017828 227 LATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKD 306 (365)
Q Consensus 227 la~~sk~~~e~~~~~~~~~~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~d 306 (365)
+.. .+....++||||+|||+||||||||++|+||++|+.+|++||.+|.|++|++++ .++..+.+
T Consensus 100 ~~~---------~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~------~~~~~~~~ 164 (215)
T PF02309_consen 100 LSE---------KQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHG------LNESGLLD 164 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc---------cccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccc------ccchhhcc
Confidence 762 112234799999999999999999999999999999999999999999998743 45566778
Q ss_pred ccCCCceEEEEEcCCCCeEEccCcChHHHhhhcceeEEecCccccCcchhh
Q 017828 307 LLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 357 (365)
Q Consensus 307 ll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLrImk~Seaiglapr~ 357 (365)
++++++|+|||||+||||||||||||+|||.+|||||||+.+|++||+|||
T Consensus 165 ~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~ 215 (215)
T PF02309_consen 165 LLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA 215 (215)
T ss_dssp ---------------------------------------------------
T ss_pred ccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence 888899999999999999999999999999999999999999999999997
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.41 E-value=0.00036 Score=54.20 Aligned_cols=68 Identities=26% Similarity=0.444 Sum_probs=55.2
Q ss_pred eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML 326 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML 326 (365)
-|||+..|. +=|.+.+..--+|.+|...+++.|... ...+.|.|.|.||||..
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~Y~D~dgD~V~ 55 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------------------DEDFQLKYKDEDGDLVT 55 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------------------TSSEEEEEEETTSSEEE
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------CccEEEEeeCCCCCEEE
Confidence 589999997 333588888889999999999999741 24799999999999998
Q ss_pred ccC-cChHHHhhhcce
Q 017828 327 VGD-VPWEMFIGTCKR 341 (365)
Q Consensus 327 VGD-VPWemFv~svKR 341 (365)
+-+ .=|++.+..+++
T Consensus 56 i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 56 ISSDEDLQEAIEQAKE 71 (84)
T ss_dssp ESSHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHh
Confidence 875 568888888753
No 3
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.13 E-value=0.0023 Score=49.74 Aligned_cols=66 Identities=26% Similarity=0.419 Sum_probs=52.5
Q ss_pred eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML 326 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML 326 (365)
=|||.-.|. -|.+-+..--+|.+|...+.+.|.. ....+.|.|+|.||||..
T Consensus 3 ~vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~--------------------------~~~~~~l~Y~Dedgd~v~ 54 (81)
T smart00666 3 DVKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL--------------------------DNQSFTLKYQDEDGDLVS 54 (81)
T ss_pred cEEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC--------------------------CCCCeEEEEECCCCCEEE
Confidence 378887554 6777888889999999999999974 113689999999999987
Q ss_pred ccC-cChHHHhhhcc
Q 017828 327 VGD-VPWEMFIGTCK 340 (365)
Q Consensus 327 VGD-VPWemFv~svK 340 (365)
+.+ .=|.+.+..++
T Consensus 55 l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 55 LTSDEDLEEAIEEYD 69 (81)
T ss_pred ecCHHHHHHHHHHHH
Confidence 665 57887777766
No 4
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.86 E-value=0.0034 Score=52.09 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=51.4
Q ss_pred eEEEeecCCcccceecCC---CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCC
Q 017828 247 FVKVSMDGAPYLRKVDLK---NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD 323 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~---~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGD 323 (365)
-|||.-+|.-+=-++++. ..-+|++|...+.+.|.. ....+|+|.|.|.|||
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l-------------------------~~~~~~~l~Y~Dedgd 56 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL-------------------------SPDADLSLTYTDEDGD 56 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCC
Confidence 489999998555555554 467999999999999974 1125899999999999
Q ss_pred eEEccCcChHHHhhhcce
Q 017828 324 WMLVGDVPWEMFIGTCKR 341 (365)
Q Consensus 324 wMLVGDVPWemFv~svKR 341 (365)
|..+-+. +.|...+.+
T Consensus 57 ~V~l~~D--~DL~~a~~~ 72 (91)
T cd06398 57 VVTLVDD--NDLTDAIQY 72 (91)
T ss_pred EEEEccH--HHHHHHHHH
Confidence 9988765 455554443
No 5
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.77 E-value=0.0071 Score=46.65 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=52.0
Q ss_pred eEEEeecCCcccceecCC-CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017828 247 FVKVSMDGAPYLRKVDLK-NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~-~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM 325 (365)
-|||+-.|. -|.+=+. .--+|++|...|.+.|... ...+.+.|.|.||||.
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~y~D~e~d~v 53 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD--------------------------AVSFKLKYPDEDGDLV 53 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC--------------------------CCcEEEEeeCCCCCEE
Confidence 378888875 4444445 8889999999999999741 0368999999999999
Q ss_pred EccC-cChHHHhhhcc
Q 017828 326 LVGD-VPWEMFIGTCK 340 (365)
Q Consensus 326 LVGD-VPWemFv~svK 340 (365)
.+.+ .=|++.++.++
T Consensus 54 ~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 54 TISSDEDLEEAIEEAR 69 (81)
T ss_pred EeCCHHHHHHHHHHHh
Confidence 8887 67887777766
No 6
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.76 E-value=0.0049 Score=50.11 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=44.0
Q ss_pred eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML 326 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML 326 (365)
-|||...|. -+.+-|..--+|++|...+.++|..- +.+.|.|-|.|.||||.+
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~-------------------------~~~~f~LkY~Ddegd~v~ 54 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD-------------------------DMSAFDLKYLDDDEEWVL 54 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC-------------------------CCCeeEEEEECCCCCeEE
Confidence 489999997 45566666669999999999999740 125799999999999997
Q ss_pred cc
Q 017828 327 VG 328 (365)
Q Consensus 327 VG 328 (365)
+-
T Consensus 55 lt 56 (82)
T cd06407 55 LT 56 (82)
T ss_pred ee
Confidence 64
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.23 E-value=0.014 Score=48.07 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=46.1
Q ss_pred eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML 326 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML 326 (365)
-|||.-.|.-+--+++-+..-+|++|...+.++|.. + .+.|.|-|.||||.+
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l--------------------------~--~f~lKYlDde~e~v~ 53 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL--------------------------N--DIQIKYVDEENEEVS 53 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC--------------------------C--cceeEEEcCCCCEEE
Confidence 389999999777778777788999999999999974 1 478999999999988
Q ss_pred cc
Q 017828 327 VG 328 (365)
Q Consensus 327 VG 328 (365)
+-
T Consensus 54 ls 55 (81)
T cd06396 54 VN 55 (81)
T ss_pred EE
Confidence 74
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=96.00 E-value=0.036 Score=45.76 Aligned_cols=74 Identities=20% Similarity=0.451 Sum_probs=50.4
Q ss_pred eEEEeecCCcccceecCCCCC-ChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017828 247 FVKVSMDGAPYLRKVDLKNYS-KYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~~y~-sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM 325 (365)
-+|+.-.|. -|.+=+..-. +|.+|...+.+.|... +.....+.+.|.|.|||+.
T Consensus 2 iiK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~-----------------------~~~~~~flIKYkD~dGDlV 56 (81)
T cd06401 2 ILKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGK-----------------------LGSSDDVLIKYKDEDGDLI 56 (81)
T ss_pred eEEEEeCCe--EEEEeccCccccHHHHHHHHHHHhccc-----------------------cCCcccEEEEEECCCCCEE
Confidence 367777666 4665444433 9999999999999741 0112479999999999999
Q ss_pred EccCc---ChHHHhhhcceeEEe
Q 017828 326 LVGDV---PWEMFIGTCKRLRIM 345 (365)
Q Consensus 326 LVGDV---PWemFv~svKRLrIm 345 (365)
-+.+- -|-.=+...+||+|.
T Consensus 57 TIts~~dL~~A~~~~~~~~l~~~ 79 (81)
T cd06401 57 TIFDSSDLSFAIQCSRILKLTLF 79 (81)
T ss_pred EeccHHHHHHHHhcCcceEEEEe
Confidence 99874 344334444555553
No 9
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=94.98 E-value=0.065 Score=44.49 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=44.7
Q ss_pred eEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEE
Q 017828 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML 326 (365)
Q Consensus 247 yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwML 326 (365)
-||++-.|.-.--.+|. .-+|++|.+.+..||.. ..+..|++.|.|.|||---
T Consensus 2 ~~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-------------------------~~~q~ft~kw~DEEGDp~t 54 (83)
T cd06404 2 RVKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-------------------------HNDQPFTLKWIDEEGDPCT 54 (83)
T ss_pred eEEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCCcee
Confidence 37999999855555665 77899999999999974 1234799999999999877
Q ss_pred ccC
Q 017828 327 VGD 329 (365)
Q Consensus 327 VGD 329 (365)
+..
T Consensus 55 iSS 57 (83)
T cd06404 55 ISS 57 (83)
T ss_pred ecC
Confidence 654
No 10
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.95 E-value=0.051 Score=45.10 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=37.9
Q ss_pred CcccceecCC--CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEcc
Q 017828 255 APYLRKVDLK--NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVG 328 (365)
Q Consensus 255 ~pIGRKVDL~--~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLVG 328 (365)
.|-||.+=++ ...||.+|..++.+-|+.-. .....|.|.|.|.||||.+.-
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~-----------------------~~~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD-----------------------FETHLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc-----------------------ccCCcccEEEEcCCCCEEEEe
Confidence 4567765544 37899999999999996410 002469999999999999864
No 11
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=94.94 E-value=0.098 Score=43.51 Aligned_cols=59 Identities=27% Similarity=0.481 Sum_probs=43.6
Q ss_pred ceEEEeecC---Cccccee--cCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcC
Q 017828 246 LFVKVSMDG---APYLRKV--DLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDK 320 (365)
Q Consensus 246 ~yVKV~MDG---~pIGRKV--DL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDk 320 (365)
+.||.+..| .+=-|.+ |=....+|++|...+.++|.. +.+..|+|.|.|.
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-------------------------l~~~~ftlky~De 55 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-------------------------LRGKNFQLFWKDE 55 (87)
T ss_pred CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-------------------------cCCCcEEEEEECC
Confidence 367777766 2333444 446667999999999999963 1235799999999
Q ss_pred CCCeEEccC
Q 017828 321 DGDWMLVGD 329 (365)
Q Consensus 321 EGDwMLVGD 329 (365)
|||..-+..
T Consensus 56 eGDlvtIss 64 (87)
T cd06402 56 EGDLVAFSS 64 (87)
T ss_pred CCCEEeecC
Confidence 999987765
No 12
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=94.64 E-value=0.083 Score=43.63 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=49.6
Q ss_pred EEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEc
Q 017828 248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (365)
Q Consensus 248 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLV 327 (365)
||..-|..=-=-.+|.....+|++++.-|++||.. .+..|+|-|.|.+||.+-+
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l--------------------------~~~~f~i~Y~D~~gDLLPI 56 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI--------------------------PNVDFLIGYTDPHGDLLPI 56 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC--------------------------CCCcEEEEEeCCCCCEecc
Confidence 66666666222245555569999999999999974 1247999999999999977
Q ss_pred c-CcChHHHhhhcce
Q 017828 328 G-DVPWEMFIGTCKR 341 (365)
Q Consensus 328 G-DVPWemFv~svKR 341 (365)
- |+-+..=++++++
T Consensus 57 nNDdNf~kAlssa~p 71 (80)
T cd06403 57 NNDDNFLKALSSANP 71 (80)
T ss_pred cCcHHHHHHHHcCCC
Confidence 5 4566666677773
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=92.92 E-value=0.34 Score=40.27 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=51.1
Q ss_pred EEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEc
Q 017828 248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327 (365)
Q Consensus 248 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLV 327 (365)
-||+-+|. .|++-...-=+|..|.+.|+.+|.... -.+.|||.|.|||..-+
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~--------------------------~~~~vtYiDeD~D~ITl 54 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE--------------------------IKVGVTYIDNDNDEITL 54 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh--------------------------hHeEEEEEcCCCCEEEe
Confidence 48888887 899988888999999999999998521 13789999999998755
Q ss_pred cC-cChHHHhhhcce
Q 017828 328 GD-VPWEMFIGTCKR 341 (365)
Q Consensus 328 GD-VPWemFv~svKR 341 (365)
-| .=.+.|..-..|
T Consensus 55 ssd~eL~d~~~~~~~ 69 (82)
T cd06397 55 SSNKELQDFYRLSHR 69 (82)
T ss_pred cchHHHHHHHHhccc
Confidence 44 556666554444
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=90.53 E-value=0.83 Score=38.09 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=51.5
Q ss_pred ceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017828 246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (365)
Q Consensus 246 ~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM 325 (365)
+-|||+-.|. .|-|-+..--+|++|...+.++|.. ...++|-|.|. ||..
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~~~~~iKykDE-GD~i 52 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------KRRLKIKMKDD-GDMI 52 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCceEEEEEcC-CCCc
Confidence 5689999998 6777777778899999999999974 12689999999 9999
Q ss_pred EccCc-ChHHHhhhcc
Q 017828 326 LVGDV-PWEMFIGTCK 340 (365)
Q Consensus 326 LVGDV-PWemFv~svK 340 (365)
-++|- =.++-+.++|
T Consensus 53 ti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 53 TMGDQDDLDMAIDTAR 68 (86)
T ss_pred cccCHHHHHHHHHHHH
Confidence 88873 4455555555
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=53.15 E-value=23 Score=30.21 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=30.4
Q ss_pred ecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeE
Q 017828 261 VDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM 325 (365)
Q Consensus 261 VDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwM 325 (365)
=||+.--.|.+|..-..+-|..+ +-.|-|.|.|||..
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~~----------------------------dIaLNYrD~EGDLI 58 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQRE----------------------------DIALNYRDAEGDLI 58 (92)
T ss_pred cccccCccHHHHHHHHHHHhchh----------------------------heeeeeecCCCCEE
Confidence 37888889999999888888641 45789999999985
No 16
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=46.94 E-value=15 Score=27.70 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=14.5
Q ss_pred EEEEEcCCCCeEEccCc
Q 017828 314 VLTYEDKDGDWMLVGDV 330 (365)
Q Consensus 314 vLtYEDkEGDwMLVGDV 330 (365)
-+.|.|.||+++++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 47899999999999984
No 17
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=43.56 E-value=1e+02 Score=25.69 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=49.0
Q ss_pred ceEEEeecCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCC-Ce
Q 017828 246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDG-DW 324 (365)
Q Consensus 246 ~yVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEG-Dw 324 (365)
.-|||+-.+ .=.|-...=-+|.+|...|.+-+.. ++.+-+|.|.|.+. +.
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl--------------------------~~e~i~LsYkde~s~~~ 53 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLEL--------------------------PAEHITLSYKSEASGED 53 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCC--------------------------CchhcEEEeccCCCCCc
Confidence 358999997 3345556667899999999888863 12356799998875 55
Q ss_pred EEccCcChHHHhhhcc
Q 017828 325 MLVGDVPWEMFIGTCK 340 (365)
Q Consensus 325 MLVGDVPWemFv~svK 340 (365)
..++|-=|+.-.+.||
T Consensus 54 v~l~d~dle~aws~~~ 69 (80)
T cd06406 54 VILSDTNMEDVWSQAK 69 (80)
T ss_pred cCcChHHHHHHHHhhc
Confidence 4559999998888887
No 18
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=35.87 E-value=65 Score=27.34 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=35.0
Q ss_pred cCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEcCCCCeEEcc
Q 017828 253 DGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVG 328 (365)
Q Consensus 253 DG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYEDkEGDwMLVG 328 (365)
+|..+--.||...+=+|.++..++.+....-| --.+-|||.|||+.-|-
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT---------------------------~tAFeYEDE~gDRITVR 57 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEAT---------------------------TTAFEYEDEDGDRITVR 57 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhccccc---------------------------ccceeeccccCCeeEec
Confidence 34456667777777889999888887764311 12366999999998874
No 19
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=29.29 E-value=20 Score=33.06 Aligned_cols=16 Identities=50% Similarity=0.729 Sum_probs=9.8
Q ss_pred CccccccccCCCCCCC
Q 017828 68 NLKATELRLGLPGSQS 83 (365)
Q Consensus 68 nlk~TELRLGLPGs~s 83 (365)
||=-.-=|||.|||.|
T Consensus 94 DlvIARGRLGvPGSGS 109 (154)
T PF11576_consen 94 DLVIARGRLGVPGSGS 109 (154)
T ss_dssp SEEEEEEE-SSTTS-E
T ss_pred cEEEEcccccCCCCcc
Confidence 4444455999999986
No 20
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=26.79 E-value=27 Score=32.83 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=29.5
Q ss_pred hccccCCCceEEEEEcCCCCeEEccCcChHHHhhhcceeE
Q 017828 304 LKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLR 343 (365)
Q Consensus 304 L~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLr 343 (365)
|.+.|.-.+|..-|.+. .|..|.||+.+++.++||.
T Consensus 91 L~~~L~~~G~~ae~~~~----~i~T~a~~eev~~l~~~Ls 126 (190)
T PF09840_consen 91 LVDALKLLGYKAEYRED----VIKTDAPLEEVVELAERLS 126 (190)
T ss_pred HHHHHHhCCCeeEEeCC----eEEecCCHHHHHHHHHHHH
Confidence 45666667888888765 8899999999999999873
No 21
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.40 E-value=96 Score=31.55 Aligned_cols=74 Identities=30% Similarity=0.503 Sum_probs=51.5
Q ss_pred cCCcccceecCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccccCCCceEEEEEc--CCCCeEEccCc
Q 017828 253 DGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYED--KDGDWMLVGDV 330 (365)
Q Consensus 253 DG~pIGRKVDL~~y~sY~eLs~aLe~MF~~f~~gq~g~~g~~g~e~~~e~kL~dll~gseyvLtYED--kEGDwMLVGDV 330 (365)
+|.|.|| +..|++-+||++.+..-|.+... | . .-+|.-+ -|=+.||-|-.
T Consensus 62 HGSptg~---Ie~fsnv~ELY~kIAe~F~Is~~-----------d---------I-----lfcTlNshKvDM~~llgGqi 113 (334)
T KOG3938|consen 62 HGSPTGR---IEGFSNVRELYQKIAEAFDISPD-----------D---------I-----LFCTLNSHKVDMKRLLGGQI 113 (334)
T ss_pred cCCccce---ecccccHHHHHHHHHHHhcCCcc-----------c---------e-----EEEecCCCcccHHHHhcCcc
Confidence 4667777 45789999999999999976210 0 0 0111112 23445788888
Q ss_pred ChHHHh-----hhcceeEEecCccccCcc
Q 017828 331 PWEMFI-----GTCKRLRIMKSTDAIGLA 354 (365)
Q Consensus 331 PWemFv-----~svKRLrImk~Seaigla 354 (365)
-.+.|+ .-.|-++|+|+.|+.||.
T Consensus 114 gleDfiFAHvkGq~kEv~v~KsedalGlT 142 (334)
T KOG3938|consen 114 GLEDFIFAHVKGQAKEVEVVKSEDALGLT 142 (334)
T ss_pred ChhhhhhhhhcCcceeEEEEecccccceE
Confidence 888775 356789999999999986
No 22
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=26.23 E-value=1.6e+02 Score=26.46 Aligned_cols=82 Identities=30% Similarity=0.453 Sum_probs=46.4
Q ss_pred ceEEEeecCC--cccceecCCCCCChHHHHHHHHHhhcc-------ccccc--cCCC---CC---c--chhhhhhhhhcc
Q 017828 246 LFVKVSMDGA--PYLRKVDLKNYSKYQELSSALEKMFSC-------FTIGQ--YGSH---GA---L--GREMLSESKLKD 306 (365)
Q Consensus 246 ~yVKV~MDG~--pIGRKVDL~~y~sY~eLs~aLe~MF~~-------f~~gq--~g~~---g~---~--g~e~~~e~kL~d 306 (365)
.-+||..+|. +|=|.|.+..-.+..+|-.++...|+- |.++. .+.. +. . ......+.+|.+
T Consensus 5 y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~~~HL~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 84 (179)
T PF07929_consen 5 YQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWDDDHLYEFFIGGERYGIPDEDGMDFSEGDEIKDASEVKLGE 84 (179)
T ss_dssp EEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT----S-EEEEEE-TTTSSESSS---------EEETTT-BHHH
T ss_pred EEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcCCCEeEEEEECCCccccccccccccccCCCcceeeeEEhhh
Confidence 4678888874 899999999999999999999998852 22210 1110 00 0 001124566777
Q ss_pred ccCCCceEEEEE-cCCCCeEEc
Q 017828 307 LLHGSEFVLTYE-DKDGDWMLV 327 (365)
Q Consensus 307 ll~gseyvLtYE-DkEGDwMLV 327 (365)
++....-.++|. |--.+|++.
T Consensus 85 ~~~~~~~~~~Y~YDfGD~W~h~ 106 (179)
T PF07929_consen 85 LLLEEGDKFTYVYDFGDDWEHE 106 (179)
T ss_dssp C-BTTC-EEEEEE-TTTTEEEE
T ss_pred hccCcCCEEEEEEcCCCCEEEE
Confidence 774444455555 777778764
No 23
>PF09582 AnfO_nitrog: Iron only nitrogenase protein AnfO (AnfO_nitrog); InterPro: IPR014287 Proteins in this entry include Anf1 from Rhodobacter capsulatus (Rhodopseudomonas capsulata) and AnfO from Azotobacter vinelandii. They are found exclusively in species which contain the iron-only nitrogenase, and are encoded immediately downstream of the structural genes for the nitrogenase enzyme in these species.
Probab=20.08 E-value=1.2e+02 Score=28.65 Aligned_cols=48 Identities=33% Similarity=0.830 Sum_probs=36.9
Q ss_pred CCceEEEEEcCCCCeEEccCcChHH------------------HhhhcceeEEecCccccCcchhhHhh
Q 017828 310 GSEFVLTYEDKDGDWMLVGDVPWEM------------------FIGTCKRLRIMKSTDAIGLAPRAVEK 360 (365)
Q Consensus 310 gseyvLtYEDkEGDwMLVGDVPWem------------------Fv~svKRLrImk~Seaiglapr~~ek 360 (365)
..+++.+|+..+|+|-++.+.|..+ |+..| ||.-..++.|++--..++
T Consensus 18 e~G~v~vy~~~~g~W~~~~e~~f~~~~~~~l~~iR~~~~~li~~L~dC---kifV~~~v~Gi~y~~Le~ 83 (202)
T PF09582_consen 18 EPGFVRVYEKDDGKWKVIREIPFELCDAKGLAEIRQKISELIEFLGDC---KIFVAKSVSGIPYSLLEK 83 (202)
T ss_pred CCcEEEEEECCCCceEEeEEEEeccCCCCCHHHHHHHHHHHHHHhCCc---EEEEEccccCccHHHHHH
Confidence 4689999999999999999999982 44445 466667788887665554
Done!