Query 017829
Match_columns 365
No_of_seqs 110 out of 151
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03676 UPF0183: Uncharacteri 100.0 2E-108 4E-113 823.5 33.1 321 26-358 1-345 (394)
2 KOG2819 Uncharacterized conser 100.0 7E-102 2E-106 747.3 24.9 327 18-357 1-356 (413)
3 PRK11251 DNA-binding transcrip 51.4 28 0.0006 29.9 4.6 21 234-254 35-55 (109)
4 PF04355 SmpA_OmlA: SmpA / Oml 50.3 6.8 0.00015 30.0 0.6 21 234-254 11-31 (71)
5 COG4454 Uncharacterized copper 45.1 14 0.0003 33.8 1.8 20 300-319 133-152 (158)
6 PF05610 DUF779: Protein of un 35.7 27 0.00058 29.4 2.0 20 17-37 65-84 (95)
7 PF14105 DUF4278: Domain of un 34.6 66 0.0014 23.9 3.8 15 139-153 23-37 (57)
8 PF08006 DUF1700: Protein of u 34.0 16 0.00036 33.0 0.5 30 238-267 40-69 (181)
9 PF14504 CAP_assoc_N: CAP-asso 31.9 29 0.00063 30.7 1.8 19 237-255 1-19 (141)
10 PF11399 DUF3192: Protein of u 31.8 34 0.00073 29.2 2.0 27 234-260 30-56 (102)
11 PRK11548 outer membrane biogen 29.7 1E+02 0.0023 26.0 4.7 20 234-253 45-64 (113)
12 PF15530 Toxin_50: Putative to 29.3 58 0.0013 29.8 3.2 36 121-156 89-137 (168)
13 PF00609 DAGK_acc: Diacylglyce 27.6 22 0.00048 31.6 0.3 17 281-297 2-18 (161)
14 KOG2667 COPII vesicle protein 27.1 66 0.0014 33.3 3.6 21 115-135 235-257 (379)
15 PF02728 Cu_amine_oxidN3: Copp 25.1 87 0.0019 25.7 3.4 29 283-311 68-100 (101)
16 PF03676 UPF0183: Uncharacteri 23.7 2.6E+02 0.0057 29.1 7.2 75 18-92 197-291 (394)
17 PRK10301 hypothetical protein; 23.5 2.5E+02 0.0054 24.3 6.0 41 61-102 32-73 (124)
18 smart00462 PTB Phosphotyrosine 23.2 1.2E+02 0.0026 25.2 4.0 44 29-82 11-59 (134)
19 KOG3384 Selenoprotein [General 20.7 1.3E+02 0.0028 27.2 3.7 36 39-77 91-127 (154)
No 1
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=100.00 E-value=1.8e-108 Score=823.54 Aligned_cols=321 Identities=44% Similarity=0.816 Sum_probs=294.2
Q ss_pred CCcccceecCCcHHHHHHHHHcCCCccceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCcceEEEc
Q 017829 26 GVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYA 105 (365)
Q Consensus 26 G~gLG~f~LG~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~Ivi~l~~~GirL~Fd~~~QRL~lIEV~d~~~~~L~Y~ 105 (365)
|.++|+|+|||||||||++||+++++||+|||+||+++|+..||||+||++||||+|||++||||||||+||++++|+|+
T Consensus 1 ~~~~g~f~LG~~l~~vl~~lk~~~~~~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~ 80 (394)
T PF03676_consen 1 GNSLGEFVLGMSLHQVLTILKSEPQTFPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYK 80 (394)
T ss_pred CCccceEEcCCcHHHHHHHHHhccccCCceEEEECCCCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceeeeeccccCCCCCCccCCCCcEEEEeeCceEEEeeCCcccccccccccCCcccccCCCCCcceeEEEE
Q 017829 106 TSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSI 185 (365)
Q Consensus 106 ~~~~~~~~~~ptf~~Iy~~FGPTyPG~yd~~~~~y~LsYpGlaF~Fpi~~~~~~~~~~~~~~l~l~f~~~~~p~~s~m~I 185 (365)
+++|++|++.|||++||++|||||||+||+++++|+||||||||+||+++++++.+.++.+ +++++++++|+|++|+|
T Consensus 81 ~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaI 158 (394)
T PF03676_consen 81 GSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYVLSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAI 158 (394)
T ss_pred cccccCcccCcchheeheccCCCCCCccCCCCCEEEEEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEE
Confidence 9999999999999999999999999999999999999999999999999988888887753 88999999999999999
Q ss_pred eeCCCCcccccCCcccccCCCCCC----CCceEEEEEEEEeCC------cEEEEecc--------------eEEEcCCCH
Q 017829 186 YDGSADKKVGVGSLFDKAIAPSLP----VGSLYIEEVHAKLGE------ELHFTVGS--------------QHIPFGASP 241 (365)
Q Consensus 186 ~~~~~~~~v~~G~s~~e~~~p~l~----~~~~~~e~v~v~~~~------~l~f~~~~--------------~~I~~G~T~ 241 (365)
| +|++|++++.|++| ++++|.++|+|...+ ++.|.... ++|+||+||
T Consensus 159 f---------~G~s~~ear~p~lp~~~~~~~~~~~~v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~ 229 (394)
T PF03676_consen 159 F---------SGSSWAEARAPPLPLSCYCGNLYLESVEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTP 229 (394)
T ss_pred E---------cCCchhcccCCCccccccCCCcceeeEEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCH
Confidence 9 99999999998666 488899999984432 44444332 699999999
Q ss_pred HHHHHhcCCCCccccccCCceeeccCCCCCCCCCccCcceeeecccceeEEEeCCcceEEEEEeeeCCCCCcCCCcceee
Q 017829 242 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKC 321 (365)
Q Consensus 242 QDVl~eLGpP~~if~K~Ddrm~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~t~~v~K~ILHtN~PG~~~Fn~Y~RC 321 (365)
|||++|||||++||||+||||+||++++.+...+..+|||||||+||||||||++||+|+|||||||+||||+||+|+||
T Consensus 230 qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G~Dilfd~~~~~v~K~ILHtN~PG~~~Fn~y~rC 309 (394)
T PF03676_consen 230 QDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLGLDILFDGNTHRVKKFILHTNIPGHYDFNRYNRC 309 (394)
T ss_pred HHHHHhhCCccceeecccccccccccccccCCccCCCCEEEeccccceEEEEeCCCceEEEEEEecCCCCCccccceeee
Confidence 99999999999999999999999999888777788899999999999999999999999999999999999999999999
Q ss_pred eeEEeccCCCCCcccccCcccccCCCCChhhhhhhhh
Q 017829 322 NFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKVKSF 358 (365)
Q Consensus 322 ~w~I~~~~~~~~~~~~~~~~~~it~~t~~~~i~~~~~ 358 (365)
||+|...+++.. ++.......|+++++|++|++.|.
T Consensus 310 ~f~I~~~~~~~~-~~~~~~~~~i~~~~kwd~i~~~L~ 345 (394)
T PF03676_consen 310 NFEIELSNDSNE-TDSPTNSPMITPYTKWDDIQEILG 345 (394)
T ss_pred eeEEEecCcccc-cccccccceeeccCCHhHhHHhhc
Confidence 999999865431 223333345999999999999874
No 2
>KOG2819 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.9e-102 Score=747.30 Aligned_cols=327 Identities=44% Similarity=0.746 Sum_probs=295.7
Q ss_pred eeEEEEecCCcccc----eecCCcHHHHHHHHHcCCCccceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEE
Q 017829 18 AIVLDLRPGVGIGP----FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIE 93 (365)
Q Consensus 18 ml~l~l~PG~gLG~----f~LG~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~Ivi~l~~~GirL~Fd~~~QRL~lIE 93 (365)
||+++++|.++||. |+|||+|.||+++|++|++++++|+|+||+++||..||||+||++||||+|||.+||||+||
T Consensus 1 ~Ld~tvVpd~~lg~~~~eF~lGMpi~qaiAiiqqh~riik~VqvlYsd~~Pl~~DiIinl~qdGirL~FD~~sQrLKlIE 80 (413)
T KOG2819|consen 1 MLDLTVVPDVSLGSSQWEFVLGMPIAQAIAIIQQHPRIIKNVQVLYSDQDPLSHDIIINLPQDGIRLMFDPFSQRLKLIE 80 (413)
T ss_pred CCceeEecccccCCccceeEecChHHHHHHHHHhCccceeeEEEEEecCCCcceeEEEecCCCceEEEechhhhceeEEE
Confidence 78999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcceEEEccccccCCCCcceeeeeccccCCCCCCccCCCCcEEEEeeCceEEEeeCCcccccccccc--cCCcccc
Q 017829 94 IFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDR--EAELPLE 171 (365)
Q Consensus 94 V~d~~~~~L~Y~~~~~~~~~~~ptf~~Iy~~FGPTyPG~yd~~~~~y~LsYpGlaF~Fpi~~~~~~~~~~~--~~~l~l~ 171 (365)
|.|+++++|+|+|..|++|++.||+++|+++|||||||.||++++.|+|+||||||+||.+....+.+-.+ .+..||+
T Consensus 81 V~dl~~vklrY~gv~fnsp~~lpTieqi~~sFGaThPGvYd~~~~iy~l~~~GLSF~fp~~~~~~~~~~~g~~h~l~sL~ 160 (413)
T KOG2819|consen 81 VFDLKKVKLRYCGVHFNSPAILPTIEQIDQSFGATHPGVYDSAHQIYVLSWPGLSFCFPGGENSNPKVHPGFAHGLRSLV 160 (413)
T ss_pred EecceEEEEEEeeeEecCcccchhHHHHHHhhCCCCCCCcCChhhhceeecCceEEECCCCCCCCcccccCccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999765443444222 3367999
Q ss_pred cCCCCCcceeEEEEeeCCCCcccccCCcccccCCCCCC----CCceEEEEEEEEeCC----c------------EEE---
Q 017829 172 FPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----VGSLYIEEVHAKLGE----E------------LHF--- 228 (365)
Q Consensus 172 f~~~~~p~~s~m~I~~~~~~~~v~~G~s~~e~~~p~l~----~~~~~~e~v~v~~~~----~------------l~f--- 228 (365)
|++|++|+++||.|| .|++..|++.|.+| .|++|.++|+|.+.+ | |.+
T Consensus 161 ~~~g~tPv~~kmsiY---------~g~n~~e~~~~~~plscy~gq~~~rsv~~lr~~~~~~gl~lkl~t~~Gr~l~~~~~ 231 (413)
T KOG2819|consen 161 FPAGATPVVTKMSIY---------RGSNPSEPESPDLPLSCYVGQLYTRSVEVLREGGNPVGLDLKLDTQCGRILLPERV 231 (413)
T ss_pred ecCCCCceeEEEEEe---------cCCCccccccCCccchhhhhhhhhcccccccCCCCccceeEeecccCCcccccccc
Confidence 999999999999999 88888888888554 466676766665542 3 333
Q ss_pred EecceEEEcCCCHHHHHHhcCCCCccccccCCceeeccCCCCCCCCCccCcceeeecccceeEEEeCCcceEEEEEeeeC
Q 017829 229 TVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTN 308 (365)
Q Consensus 229 ~~~~~~I~~G~T~QDVl~eLGpP~~if~K~Ddrm~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~t~~v~K~ILHtN 308 (365)
+...++|.||+|||||+++||+|.+||||+||+|+||+++..|..++.++|||||||++|+|||||+.||+|||||||||
T Consensus 232 ~v~~r~~~FGdScqDV~t~LGaP~kvf~Ks~DkMkIHs~s~~r~~~t~~ndyFfNYFtlGlDiLFD~~t~kvkKFVLHTN 311 (413)
T KOG2819|consen 232 SVYTRQIYFGDSCQDVQTMLGAPTKVFYKSEDKMKIHSPSPKRQLPTKCNDYFFNYFTLGLDILFDAVTHKVKKFVLHTN 311 (413)
T ss_pred eEeeEeeecCCcHhHHHHHhCCCcccccccccceeecCCCCcccCCCcCcchhhhhhhcchhheeecccceeeEEEEecc
Confidence 23567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCcceeeeeEEeccCCCCCcccccCcccccCCCCChhhhhhhh
Q 017829 309 YPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKVKS 357 (365)
Q Consensus 309 ~PG~~~Fn~Y~RC~w~I~~~~~~~~~~~~~~~~~~it~~t~~~~i~~~~ 357 (365)
+|||++||+|+||||+|.+..+. .+.++...|++++|||+|++.+
T Consensus 312 yPGH~dFnmY~rCnF~i~l~ad~----~~ads~~ei~t~skwD~ise~~ 356 (413)
T KOG2819|consen 312 YPGHCDFNMYHRCNFQIFLNADA----AEADSQTEIRTYSKWDEISEAL 356 (413)
T ss_pred CCCcccccceeeeEEEEEccCCc----cccccCceeccccchhHHHHHh
Confidence 99999999999999999999865 3335556788999999999965
No 3
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=51.44 E-value=28 Score=29.86 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.7
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 017829 234 HIPFGASPQDVWTELGRPCGI 254 (365)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~i 254 (365)
.|..|.|-|+|...||.|...
T Consensus 35 qv~~GmTr~qV~~~lGtP~~~ 55 (109)
T PRK11251 35 DVKKGMTRQQVAQIAGKPSSE 55 (109)
T ss_pred HcCCCCCHHHHHHHcCCCCcc
Confidence 678899999999999999754
No 4
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=50.31 E-value=6.8 Score=29.98 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=17.0
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 017829 234 HIPFGASPQDVWTELGRPCGI 254 (365)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~i 254 (365)
.|..|.|-++|.+.||+|...
T Consensus 11 ~i~~GmTk~qV~~lLG~P~~~ 31 (71)
T PF04355_consen 11 QIKPGMTKDQVRALLGSPSLR 31 (71)
T ss_dssp TT-TTSBHHHHHHHHTS-SEE
T ss_pred hhcCCCCHHHHHHhcCCCCcc
Confidence 467898889999999999887
No 5
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=45.06 E-value=14 Score=33.78 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.4
Q ss_pred EEEEEeeeCCCCCcCCCcce
Q 017829 300 IKKFIMHTNYPGHADFNSYI 319 (365)
Q Consensus 300 v~K~ILHtN~PG~~~Fn~Y~ 319 (365)
--|+-+-+|+||||+++++-
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g 152 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVG 152 (158)
T ss_pred CccEEEEecCCCcccCCcEE
Confidence 34667889999999999863
No 6
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=35.74 E-value=27 Score=29.41 Aligned_cols=20 Identities=45% Similarity=0.865 Sum_probs=16.0
Q ss_pred ceeEEEEecCCcccceecCCc
Q 017829 17 GAIVLDLRPGVGIGPFSLGMP 37 (365)
Q Consensus 17 ~ml~l~l~PG~gLG~f~LG~s 37 (365)
.-|+++|+||+| |.|.|..+
T Consensus 65 t~L~iDVv~GrG-~~FSLE~~ 84 (95)
T PF05610_consen 65 TQLTIDVVPGRG-GGFSLEAP 84 (95)
T ss_pred cEEEEEEEecCC-CeeeccCC
Confidence 358899999999 66887654
No 7
>PF14105 DUF4278: Domain of unknown function (DUF4278)
Probab=34.62 E-value=66 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=9.3
Q ss_pred EEEEeeCceEEEeeC
Q 017829 139 VYMLFYPGLSFAFPI 153 (365)
Q Consensus 139 ~y~LsYpGlaF~Fpi 153 (365)
...+.|+|+++.+..
T Consensus 23 ~v~~~YRG~~y~~~~ 37 (57)
T PF14105_consen 23 EVEGTYRGQDYRFRY 37 (57)
T ss_pred ceeeeECcceecccc
Confidence 356777777775543
No 8
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=34.01 E-value=16 Score=32.97 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=22.0
Q ss_pred CCCHHHHHHhcCCCCccccccCCceeeccC
Q 017829 238 GASPQDVWTELGRPCGIHQKQVDQMVIHSA 267 (365)
Q Consensus 238 G~T~QDVl~eLGpP~~if~K~Ddrm~IH~~ 267 (365)
|+|-||++++||.|..+-++--+...|+..
T Consensus 40 G~sEeeii~~LG~P~~iA~~i~~~~~i~~~ 69 (181)
T PF08006_consen 40 GKSEEEIIAELGSPKEIAREILAEYSIKEE 69 (181)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHhhhhhhh
Confidence 779999999999999876654444444443
No 9
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=31.87 E-value=29 Score=30.71 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=17.4
Q ss_pred cCCCHHHHHHhcCCCCccc
Q 017829 237 FGASPQDVWTELGRPCGIH 255 (365)
Q Consensus 237 ~G~T~QDVl~eLGpP~~if 255 (365)
||+|.++|.+.||.|.|+-
T Consensus 1 IG~s~~~v~~~~G~P~R~~ 19 (141)
T PF14504_consen 1 IGKSKEEVEEKLGEPDRID 19 (141)
T ss_pred CCCCHHHHHHHcCCccEee
Confidence 6999999999999999874
No 10
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=31.84 E-value=34 Score=29.19 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.7
Q ss_pred EEEcCCCHHHHHHhcCCCCccccccCC
Q 017829 234 HIPFGASPQDVWTELGRPCGIHQKQVD 260 (365)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~if~K~Dd 260 (365)
.+.+|.|-++|++.||.|+-.--|..+
T Consensus 30 ~L~lg~s~~~V~~~lG~pdfsEa~~~~ 56 (102)
T PF11399_consen 30 KLSLGMSKDQVIALLGTPDFSEAYRKD 56 (102)
T ss_pred hcCCCCCHHHHHHHhCCCCchhheeeC
Confidence 788999999999999999977555444
No 11
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=29.67 E-value=1e+02 Score=26.00 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.7
Q ss_pred EEEcCCCHHHHHHhcCCCCc
Q 017829 234 HIPFGASPQDVWTELGRPCG 253 (365)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~ 253 (365)
.|..|.|-++|...||.|.-
T Consensus 45 ~l~~GmTk~qV~~lLGtP~~ 64 (113)
T PRK11548 45 KIHVGMTQQQVAYTLGTPMM 64 (113)
T ss_pred HhcCCCCHHHHHHHcCCCcc
Confidence 67889999999999999943
No 12
>PF15530 Toxin_50: Putative toxin 50
Probab=29.27 E-value=58 Score=29.78 Aligned_cols=36 Identities=36% Similarity=0.783 Sum_probs=24.5
Q ss_pred eccccCCCCCCcc-CCCC----------cEEEEee--CceEEEeeCCcc
Q 017829 121 VYALFGPTFPGVY-DKER----------SVYMLFY--PGLSFAFPIPAQ 156 (365)
Q Consensus 121 Iy~~FGPTyPG~y-d~~~----------~~y~LsY--pGlaF~Fpi~~~ 156 (365)
|-=.|||=+||.+ |+++ ...-+|| -|+.|+|-+-..
T Consensus 89 iGi~FGPYfpg~~gd~~rdyS~~~g~Gv~Sv~~S~gkDG~gfSFgvGps 137 (168)
T PF15530_consen 89 IGISFGPYFPGVFGDPDRDYSINLGFGVGSVEISYGKDGFGFSFGVGPS 137 (168)
T ss_pred EeeecCCcCccccCCCCccceecccccceEeeeeecccCceEEeecCCc
Confidence 3347999999999 5432 2234555 689999988544
No 13
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=27.56 E-value=22 Score=31.64 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.2
Q ss_pred eeeecccceeEEEeCCc
Q 017829 281 FYNYYTRGLDILFDGQT 297 (365)
Q Consensus 281 FyNYF~lGlDiLfd~~t 297 (365)
|.|||.-|+|.-+....
T Consensus 2 ~~NYfsiG~DA~ia~~F 18 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGF 18 (161)
T ss_pred eEecccccHhhHHHHHH
Confidence 88999999999877543
No 14
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=66 Score=33.32 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=16.9
Q ss_pred cceeeeecc--ccCCCCCCccCC
Q 017829 115 LATFVAVYA--LFGPTFPGVYDK 135 (365)
Q Consensus 115 ~ptf~~Iy~--~FGPTyPG~yd~ 135 (365)
...+.|+-+ .||+.|||..++
T Consensus 235 ~~n~SH~InhLSFG~~~p~~~nP 257 (379)
T KOG2667|consen 235 NLNFSHRINHLSFGEYIPGIVNP 257 (379)
T ss_pred cCCceEEEeeeccCCCCcccccC
Confidence 367888775 999999998665
No 15
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=25.06 E-value=87 Score=25.74 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=23.8
Q ss_pred eecccc---eeEEEeCCcceEEEEEeee-CCCC
Q 017829 283 NYYTRG---LDILFDGQTHKIKKFIMHT-NYPG 311 (365)
Q Consensus 283 NYF~lG---lDiLfd~~t~~v~K~ILHt-N~PG 311 (365)
|||-|= |=+++|..+..|.|+..+. .+||
T Consensus 68 n~YahPi~gl~~~vD~~~~~vi~i~d~~v~~p~ 100 (101)
T PF02728_consen 68 NFYAHPIEGLEPLVDLDSMEVIRIEDRGVFYPG 100 (101)
T ss_dssp -GGGSEEECEEEEEETTTTEEEEEEEEEEEETT
T ss_pred cccccccCceEEEEECCCCEEEEEEeCCceeeC
Confidence 677764 5589999999999999999 7776
No 16
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=23.74 E-value=2.6e+02 Score=29.05 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=52.4
Q ss_pred eeEEEEecCCccc------------ceecCCcHHHHHHHHHcCCCccceEEE---EEc-----CCCCCccceEEEcCCCC
Q 017829 18 AIVLDLRPGVGIG------------PFSLGMPICEAFASIEQQPNIYDVVHV---KYF-----DEEPLKLDIIISFPDHG 77 (365)
Q Consensus 18 ml~l~l~PG~gLG------------~f~LG~sL~~vl~~Lk~~~~~~~~v~i---~Ys-----~~~Pl~~~Ivi~l~~~G 77 (365)
-+++.+.-+.|.| .+.+|.|-.+|++.|=.-..+|.+-+= +.. .......|..-+--..|
T Consensus 197 ~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G 276 (394)
T PF03676_consen 197 GLELSLVTEGGPGRIEEPRRSNFERWIRFGDTPQDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLG 276 (394)
T ss_pred CcEEEEEEcCCCcccccccccCceEEEEeCCCHHHHHHhhCCccceeecccccccccccccccCCccCCCCEEEeccccc
Confidence 3556666666555 378999999999999876666654321 122 22334567788889999
Q ss_pred eEEEecCCCCeEEEE
Q 017829 78 FHLRFDPWSQRLRLI 92 (365)
Q Consensus 78 irL~Fd~~~QRL~lI 92 (365)
|.+.||+.+.|++-|
T Consensus 277 ~Dilfd~~~~~v~K~ 291 (394)
T PF03676_consen 277 LDILFDGNTHRVKKF 291 (394)
T ss_pred eEEEEeCCCceEEEE
Confidence 999999988886544
No 17
>PRK10301 hypothetical protein; Provisional
Probab=23.46 E-value=2.5e+02 Score=24.26 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCCCCccceEEEcCCCCeEEEecCCCC-eEEEEEEeeCCcceE
Q 017829 61 DEEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIKRLQM 102 (365)
Q Consensus 61 ~~~Pl~~~Ivi~l~~~GirL~Fd~~~Q-RL~lIEV~d~~~~~L 102 (365)
..+|.....+=.-|+. |.|.|+.+-| ++.-|+|.|-+.-.+
T Consensus 32 ~s~Pa~ga~v~~~P~~-V~L~F~e~v~~~~s~i~v~~~~g~~v 73 (124)
T PRK10301 32 HQYPAANAQVTAAPQA-LTLNFSEGIEPGFSGATITGPKQENI 73 (124)
T ss_pred ccCCCCCCccccCCCE-EEEEcCCCccccccEEEEEcCCCCEe
Confidence 6778777776666666 9999998554 566788887764433
No 18
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=23.16 E-value=1.2e+02 Score=25.25 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=31.0
Q ss_pred ccceecCCc-----HHHHHHHHHcCCCccceEEEEEcCCCCCccceEEEcCCCCeEEEe
Q 017829 29 IGPFSLGMP-----ICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRF 82 (365)
Q Consensus 29 LG~f~LG~s-----L~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~Ivi~l~~~GirL~F 82 (365)
||...+..+ +.+++..|++. .....+-..++.|.+...||++.=
T Consensus 11 LGs~~v~~~~g~~~~~~ai~~l~~~----------~~~~~~~~~~v~l~vs~~gv~v~~ 59 (134)
T smart00462 11 LGSVEVPEARGLQVVQEAIRKLRAA----------QGSEKKEPQKVILSISSRGVKLID 59 (134)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHh----------hhhccCCCCEEEEEEECCcEEEEE
Confidence 455444444 78889999875 123445568999999999999853
No 19
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=20.73 E-value=1.3e+02 Score=27.19 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=28.9
Q ss_pred HHHHHHHHc-CCCccceEEEEEcCCCCCccceEEEcCCCC
Q 017829 39 CEAFASIEQ-QPNIYDVVHVKYFDEEPLKLDIIISFPDHG 77 (365)
Q Consensus 39 ~~vl~~Lk~-~~~~~~~v~i~Ys~~~Pl~~~Ivi~l~~~G 77 (365)
-||-+.+++ .+..||+|+|+|=-.. .|++.-|.++|
T Consensus 91 PqiqaFi~sd~~~kFp~vkvkyVrg~---~P~l~llDadg 127 (154)
T KOG3384|consen 91 PQIQAFIESDEPEKFPGVKVKYVRGS---DPVLKLLDADG 127 (154)
T ss_pred HHHHHHHhcCchhhCCCceEEEecCC---CCeeEeecCCC
Confidence 588899999 8899999999998765 46776666654
Done!