Query 017829
Match_columns 365
No_of_seqs 110 out of 151
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh9_A Small protein A, BAME p 77.8 2.1 7.3E-05 33.4 4.0 21 234-254 12-32 (88)
2 2km7_A Small protein A; BAME, 70.5 4.4 0.00015 32.6 4.2 21 234-254 26-46 (102)
3 2pxg_A Outer membrane protein; 49.0 16 0.00056 30.2 4.0 21 234-254 25-45 (118)
4 4dm5_A Osmotically inducible l 17.1 51 0.0017 27.0 1.5 22 235-256 24-45 (103)
5 4h0a_A Uncharacterized protein 15.0 51 0.0017 31.5 1.2 20 237-256 45-64 (323)
6 3d8d_A Amyloid beta A4 precurs 15.0 3.6E+02 0.012 23.2 6.5 55 37-98 28-83 (148)
7 3poj_A Mannan-binding lectin s 13.1 1.1E+02 0.0039 23.6 2.6 25 304-330 16-40 (115)
8 3h4x_A Phosphatidylinositol-sp 11.6 1.7E+02 0.0058 28.6 3.8 50 15-75 55-130 (339)
9 1f46_A Cell division protein Z 11.5 71 0.0024 27.0 0.9 26 128-155 61-86 (140)
10 4ifa_A Extracellular protein c 11.1 87 0.003 30.3 1.5 23 234-256 52-74 (339)
No 1
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=77.77 E-value=2.1 Score=33.38 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 017829 234 HIPFGASPQDVWTELGRPCGI 254 (365)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~i 254 (365)
.|..|.|-++|...||+|..+
T Consensus 12 ~i~~GmTk~qV~~lLG~P~~~ 32 (88)
T 2yh9_A 12 KIRVGMTQQQVAYALGTPLMS 32 (88)
T ss_dssp TCCTTCBHHHHHHHHCSCSEE
T ss_pred hccCCCCHHHHHHHcCCCccc
Confidence 578899999999999999875
No 2
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=70.49 E-value=4.4 Score=32.62 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 017829 234 HIPFGASPQDVWTELGRPCGI 254 (365)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~i 254 (365)
.|..|.|-++|...||+|..+
T Consensus 26 ~i~~GmTk~qV~~lLG~P~~~ 46 (102)
T 2km7_A 26 KIRVGMTQQQVAYALGTPLMS 46 (102)
T ss_dssp TCCTTCBHHHHHHHHCCCCCC
T ss_pred hccCCCCHHHHHHhcCCCccc
Confidence 678899889999999999875
No 3
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=48.96 E-value=16 Score=30.15 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 017829 234 HIPFGASPQDVWTELGRPCGI 254 (365)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~i 254 (365)
.|..|.|-++|...||.|...
T Consensus 25 ql~~GMTk~QV~~lLGtP~~~ 45 (118)
T 2pxg_A 25 QLQVGQSKQQVSALLGTPSIP 45 (118)
T ss_dssp TTCCCSCHHHHHHHHTSCCCC
T ss_pred HccCCCCHHHHHHHcCCCccc
Confidence 567899999999999999875
No 4
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=17.14 E-value=51 Score=27.01 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEcCCCHHHHHHhcCCCCcccc
Q 017829 235 IPFGASPQDVWTELGRPCGIHQ 256 (365)
Q Consensus 235 I~~G~T~QDVl~eLGpP~~if~ 256 (365)
|.=|.|-|+|+..+|+|..+..
T Consensus 24 V~~GMTk~qV~rigG~PsS~~~ 45 (103)
T 4dm5_A 24 VEKGMSQQEVLRIGGTPSGTQK 45 (103)
T ss_dssp CCTTCBHHHHHHHHCSCSEEEE
T ss_pred hcCCCCHHHHHHhcCCCcceEE
Confidence 4668999999999999988754
No 5
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=15.01 E-value=51 Score=31.55 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=18.3
Q ss_pred cCCCHHHHHHhcCCCCcccc
Q 017829 237 FGASPQDVWTELGRPCGIHQ 256 (365)
Q Consensus 237 ~G~T~QDVl~eLGpP~~if~ 256 (365)
||++.++|...||.|+|+.-
T Consensus 45 IG~~~~~v~~~~G~P~R~~~ 64 (323)
T 4h0a_A 45 VGKDIKVLTSKFGQADRVYP 64 (323)
T ss_dssp TTSBTHHHHHHHCSCSEEEE
T ss_pred hCCCHHHHHHHhCCcccccc
Confidence 79999999999999999853
No 6
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=14.96 E-value=3.6e+02 Score=23.18 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=33.8
Q ss_pred cHHHHHHHHHcCCCc-cceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCC
Q 017829 37 PICEAFASIEQQPNI-YDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIK 98 (365)
Q Consensus 37 sL~~vl~~Lk~~~~~-~~~v~i~Ys~~~Pl~~~Ivi~l~~~GirL~Fd~~~QRL~lIEV~d~~ 98 (365)
.+.++|..|+..+.. .....=.|.+ ..+.++.+.++++|| .|+.+|-+ |+-+-+.
T Consensus 28 ~v~~~ir~L~~~~~~~~d~~~~~wg~----gq~~~L~v~~~tlrL-vD~~tk~~--L~~~pI~ 83 (148)
T 3d8d_A 28 AVNNCIRQLSYHKNNLHDPMSGGWGE----GKDLLLQLEDETLKL-VEPQSQAL--LHAQPII 83 (148)
T ss_dssp HHHHHHHHHTTCCCCCCCTTSTTCST----TCEEEEEEETTEEEE-ECTTTCCE--EEEEEGG
T ss_pred HHHHHHHHHHhccccccccccccccc----CceEEEEEcCCeEEE-ecCCCCce--EEEeeEE
Confidence 488999999865421 1101011222 368999999999988 68877765 4433333
No 7
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=13.13 E-value=1.1e+02 Score=23.56 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=18.1
Q ss_pred EeeeCCCCCcCCCcceeeeeEEeccCC
Q 017829 304 IMHTNYPGHADFNSYIKCNFIILGSDF 330 (365)
Q Consensus 304 ILHtN~PG~~~Fn~Y~RC~w~I~~~~~ 330 (365)
|.--|+|+.|.= -..|.|.|...+.
T Consensus 16 i~SP~yP~~Yp~--~~~C~w~I~~~~g 40 (115)
T 3poj_A 16 ITSPDYPNPYPK--SSECSYTIDLEEG 40 (115)
T ss_dssp EECTTTTSCCCT--TCEEEEEEECCTT
T ss_pred EcCCCCCcCCcC--CCeEEEEEEcCCC
Confidence 334488987763 4679999998764
No 8
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=11.64 E-value=1.7e+02 Score=28.57 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=37.1
Q ss_pred ccceeEEEEecCCccccee------cC--------------------CcHHHHHHHHHcCCCccceEEEEEcCCCCCccc
Q 017829 15 AMGAIVLDLRPGVGIGPFS------LG--------------------MPICEAFASIEQQPNIYDVVHVKYFDEEPLKLD 68 (365)
Q Consensus 15 ~~~ml~l~l~PG~gLG~f~------LG--------------------~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~ 68 (365)
+..+|+|+|.|.-.=|.+. || .+|.++|..||. |++.+|-..|
T Consensus 55 GVR~LELDIw~n~~~g~~~V~Hg~~l~~~nnC~~as~~~dL~t~Tt~~tL~~CL~~IK~-----------WsdahPsh~P 123 (339)
T 3h4x_A 55 GAALLELDLWSNALGRSWRVSHSNPLGNNSNCEGAANASELRTKSRDQDFAGCLSDMRA-----------WHDAHPGHRP 123 (339)
T ss_dssp CCSEEEEEEESSSSSSSCEECSSSCSSCCSSCCCCSSGGGTTCSCCCCCHHHHHHHHHH-----------HHHHSTTCCC
T ss_pred CCCEEEEEeecCCCCCCeEEeCCCcccccccccccccccccccCCCCcCHHHHHHHHHH-----------HHHhCCCCCc
Confidence 3568999999984323222 11 579999999998 7888888899
Q ss_pred eEEEcCC
Q 017829 69 IIISFPD 75 (365)
Q Consensus 69 Ivi~l~~ 75 (365)
|+|.|..
T Consensus 124 ViI~LE~ 130 (339)
T 3h4x_A 124 ILLKIEM 130 (339)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 9988853
No 9
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=11.51 E-value=71 Score=26.98 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=19.3
Q ss_pred CCCCccCCCCcEEEEeeCceEEEeeCCc
Q 017829 128 TFPGVYDKERSVYMLFYPGLSFAFPIPA 155 (365)
Q Consensus 128 TyPG~yd~~~~~y~LsYpGlaF~Fpi~~ 155 (365)
+-||.||++ .=..++|||+|.+.+|.
T Consensus 61 ~~pg~Fd~~--~~~~~t~gvtlfl~lP~ 86 (140)
T 1f46_A 61 VKPGTFDPE--MKDFTTPGVTIFMQVPS 86 (140)
T ss_dssp STTCCCCTT--CCSCEESEEEEEEEECS
T ss_pred CCCCCCCcc--hhcCccCcEEEEEECCC
Confidence 457777764 22458899999999985
No 10
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=11.08 E-value=87 Score=30.31 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEcCCCHHHHHHhcCCCCcccc
Q 017829 234 HIPFGASPQDVWTELGRPCGIHQ 256 (365)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~if~ 256 (365)
-..||++.++|...||.|.|+.-
T Consensus 52 ~~~IG~~~~~v~~~~G~P~R~~~ 74 (339)
T 4ifa_A 52 LNMIGGDSENLLAKWGEPSRIEP 74 (339)
T ss_dssp HHHTTSBHHHHHHHHCSCSEEEE
T ss_pred HHHhCCCHHHHHHHhCCCccccc
Confidence 44679999999999999999854
Done!