Query 017832
Match_columns 365
No_of_seqs 151 out of 984
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 05:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017832.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017832hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 19.5 63 0.0046 21.6 4.0 31 210-240 7-43 (52)
2 d1l5aa1 c.43.1.2 (A:1-174) Vib 12.1 97 0.0071 23.5 4.1 32 145-180 121-152 (174)
3 d1q9ja1 c.43.1.2 (A:1-175) Pol 6.9 2E+02 0.015 21.4 4.1 32 144-179 118-149 (175)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.3 73 0.0053 18.2 0.7 16 298-313 6-21 (26)
5 d1h2sa_ f.13.1.1 (A:) Sensory 5.1 7.1E+02 0.052 19.8 7.0 63 286-348 157-222 (225)
6 d1rp3a2 a.4.13.2 (A:164-234) S 4.7 3E+02 0.022 17.4 3.4 26 152-177 34-62 (71)
7 d2vqca1 a.4.5.78 (A:4-73) F-11 4.7 77 0.0056 21.8 0.0 27 194-221 22-48 (70)
8 d1h2vc1 a.118.1.14 (C:29-290) 4.1 5.1E+02 0.037 21.2 5.3 69 248-316 37-114 (262)
9 d2g7ga2 a.121.1.1 (A:74-205) P 4.0 3.4E+02 0.025 19.2 3.5 42 165-206 6-52 (132)
10 d2g7la2 a.121.1.1 (A:87-230) P 4.0 3.4E+02 0.025 19.6 3.6 43 164-206 5-52 (144)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=19.50 E-value=63 Score=21.65 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=21.3
Q ss_pred CcchHHHHHHHHHHhhhhhHHHhHH------HHHhhh
Q 017832 210 EFDRTRMFRSGLVGFTLHGSLSHYY------YQFCEE 240 (365)
Q Consensus 210 ~~D~~Rt~rfal~G~~~~GPl~H~W------Y~~Ldr 240 (365)
-+|+||++.......+.-+-+-|+- |++||.
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWleg 43 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCccccccC
Confidence 4899998876666666556666665 667663
No 2
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=12.10 E-value=97 Score=23.53 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=25.5
Q ss_pred eEeeeccccccccHHHHHHHhhHHHHHHHHHHHHhC
Q 017832 145 LLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTN 180 (365)
Q Consensus 145 ~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~~~ 180 (365)
+++++|-+..||++..++. ++...|+..+...
T Consensus 121 ~~~~hHii~Dg~S~~~l~~----el~~~Y~~~~~g~ 152 (174)
T d1l5aa1 121 YTRAHHIVLDGYGMMLFEQ----RLSQHYQSLLSGQ 152 (174)
T ss_dssp EEEEETTTCCHHHHHHHHH----HHHHHHHHHHHTC
T ss_pred eeecccEEEcHhHHHHHHH----HHHHHHHHHhCCC
Confidence 5799999999999988874 5677887766654
No 3
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.95 E-value=2e+02 Score=21.39 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=25.4
Q ss_pred eeEeeeccccccccHHHHHHHhhHHHHHHHHHHHHh
Q 017832 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKT 179 (365)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~~ 179 (365)
-+++++|=+..||++.-++ .++...|.+.+..
T Consensus 118 l~l~~HH~i~Dg~S~~~ll----~el~~~Y~~~~~~ 149 (175)
T d1q9ja1 118 LTLYLHHCMADGHHGAVLV----DELFSRYTDAVTT 149 (175)
T ss_dssp EEEEEEGGGCCHHHHHHHH----HHHHHHHHHHHHS
T ss_pred EEEEccccccCHhHHHHHH----HHHHHHHHHHHhC
Confidence 3588999999999998776 5677788876654
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.32 E-value=73 Score=18.24 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=11.5
Q ss_pred hccchhhHHHhhhhhc
Q 017832 298 AGWKLWPFAHLVTYGL 313 (365)
Q Consensus 298 aswkvWPpaq~INF~f 313 (365)
+-|.||.+.-++.|++
T Consensus 6 aiw~fw~ffalli~yl 21 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYYL 21 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5578888887777653
No 5
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=5.10 E-value=7.1e+02 Score=19.78 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=37.7
Q ss_pred HHHHHhhHHHHhhccchhhHHHhhh---hhcccCCchhhhhhHHHHHHHHHHhhhcccchhhhhhc
Q 017832 286 SELKATFWPMLTAGWKLWPFAHLVT---YGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAE 348 (365)
Q Consensus 286 ~klk~~~~p~L~aswkvWPpaq~IN---F~fVP~~~Rvlfvn~V~~~WntyLS~l~n~k~ea~~~~ 348 (365)
+++-+........+|.+.|.+-++. +..+-+..+..+.+...++-.+....+--..+++..+|
T Consensus 157 ~~~~~~l~~~~~v~W~iYPi~y~l~~~g~~~~~~~~~~~~y~i~D~i~K~~FG~~i~~~a~~~s~~ 222 (225)
T d1h2sa_ 157 KSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAE 222 (225)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHSTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 3444556667788999999988874 34555566666666666665554444433333333333
No 6
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=4.71 E-value=3e+02 Score=17.44 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=16.9
Q ss_pred ccccccHHHHHHHh---hHHHHHHHHHHH
Q 017832 152 YWHGWTIFEIVRYA---PLHNWTAYEEAL 177 (365)
Q Consensus 152 ~~~Gwt~~eil~~~---p~~lw~~Y~~~L 177 (365)
|..|||..||...+ +..+.....+++
T Consensus 34 ~~~~~s~~eIA~~lgis~~tv~~~~~ra~ 62 (71)
T d1rp3a2 34 FYEELPAKEVAKILETSVSRVSQLKAKAL 62 (71)
T ss_dssp HTSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HhHhCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46899999999877 344444444433
No 7
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=4.69 E-value=77 Score=21.80 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=17.6
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 017832 194 SLGDWIAQCFQGKPLFEFDRTRMFRSGL 221 (365)
Q Consensus 194 ~lGDliAQ~ie~k~~~~~D~~Rt~rfal 221 (365)
.+-|++||.--..+ ..|+..|++++.+
T Consensus 22 ~ledilaqfeis~~-~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP-SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc-hHhHHHHHHHHHH
Confidence 46799999832221 2578888888754
No 8
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.11 E-value=5.1e+02 Score=21.23 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=46.8
Q ss_pred cchhhHHHHhhhhhhhHHHHHHHHHHHHhcCCChh---HHHHHHHHhhHHHHhhc-cc-----hhhHHHhhhhhcccC
Q 017832 248 WVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPF---SIFSELKATFWPMLTAG-WK-----LWPFAHLVTYGLVPV 316 (365)
Q Consensus 248 ~~vl~KVllDQlV~sPi~~~~Ff~~~~lLeG~s~~---ei~~klk~~~~p~L~as-wk-----vWPpaq~INF~fVP~ 316 (365)
+..+.+.+++.....|..+.+|-+..+++.-+..+ ++.+++..++-..+..+ |. +-=+++++|+..++.
T Consensus 37 ~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 37 KSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 45677888888888898888888888888876542 46666666666665542 22 234566677766654
No 9
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=4.01 E-value=3.4e+02 Score=19.17 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhCChhHHHHHHH-----HHHHHHHHHHHhHhCC
Q 017832 165 APLHNWTAYEEALKTNPVLAKMVISG-----VVYSLGDWIAQCFQGK 206 (365)
Q Consensus 165 ~p~~lw~~Y~~~L~~~PLlTK~iTSG-----vL~~lGDliAQ~ie~k 206 (365)
-...+...|.+.+.+||-+...+.+. .....-|.+.+.+.+.
T Consensus 6 ~lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~a 52 (132)
T d2g7ga2 6 AFSEWARSYRAAFSRHPTAIRLLATETVRDPGSLSVYHSAAAGLRGA 52 (132)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHhhcCCCCChhHHHHHHHHHHHHHHC
Confidence 34556677888999999988877653 2355666666666543
No 10
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.99 E-value=3.4e+02 Score=19.57 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHHhCChhHHHHHHH-----HHHHHHHHHHHhHhCC
Q 017832 164 YAPLHNWTAYEEALKTNPVLAKMVISG-----VVYSLGDWIAQCFQGK 206 (365)
Q Consensus 164 ~~p~~lw~~Y~~~L~~~PLlTK~iTSG-----vL~~lGDliAQ~ie~k 206 (365)
--.+.+...|.+.+.+||-+...+... -.....|.+.+.+.+.
T Consensus 5 ~~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~a 52 (144)
T d2g7la2 5 EQLRAVLTSYTLVLFAHPQLARSALVARPSGENYLRLVERVLELLARS 52 (144)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHHHHHHHHHHHHHc
Confidence 334556667778889999888876543 2344566666666654
Done!