BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017834
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC7|B Chain B, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC9|A Chain A, Dna Binding By Gata Transcription Factor-Complex 3
pdb|4HCA|A Chain A, Dna Binding By Gata Transcription Factor-Complex 1
Length = 115
Score = 35.8 bits (81), Expect = 0.036, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELE 262
+ R C +CG + TP RR G LCNACGL G R L K R + +
Sbjct: 4 MGRECVNCGATS--TPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGT 60
Query: 263 TSSDIKPATTEAENSYANQD 282
+ ++ + TT AN D
Sbjct: 61 SCANCQTTTTTLWRRNANGD 80
>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|J Chain J, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|K Chain K, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|L Chain L, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|M Chain M, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|N Chain N, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|O Chain O, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|P Chain P, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|I Chain I, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|J Chain J, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|K Chain K, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|L Chain L, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|M Chain M, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|N Chain N, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|O Chain O, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|P Chain P, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|I Chain I, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|J Chain J, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|K Chain K, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|L Chain L, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|M Chain M, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|N Chain N, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|O Chain O, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|P Chain P, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 43
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
C +C + TP RR P G + LCNACGL G +R L+
Sbjct: 4 CTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 42
>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding
Domain Of Area Complexed To A 13 Bp Dna Containing A
Tgata Site, 34 Structures
pdb|6GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding
Domain Of Area Complexed To A 13 Bp Dna Containing A
Tgata Site, Regularized Mean Structure
Length = 66
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
C +C + TP RR P G + LCNACGL G +R L+
Sbjct: 12 CTNC--FTQTTPVWRRNPEG-QPLCNACGLFLKLHGVVRPLS 50
>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain
Of Area Complexed To A 13bp Dna Containing A Cgata Site,
Regularized Mean Structure
pdb|5GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain
Of Area Complexed To A 13bp Dna Containing A Cgata Site,
35 Structures
Length = 66
Score = 32.0 bits (71), Expect = 0.62, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
C +C + TP RR P G + LCNACGL G +R L+
Sbjct: 12 CTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 50
>pdb|1TKW|A Chain A, The Transient Complex Of Poplar Plastocyanin With Turnip
Cytochrome F Determined With Paramagnetic Nmr
pdb|1PLC|A Chain A, Accuracy And Precision In Protein Crystal Structure
Analysis: Restrained Least-Squares Refinement Of The
Crystal Structure Of Poplar Plastocyanin At 1.33
Angstroms Resolution
pdb|1PNC|A Chain A, Accuracy And Precision In Protein Crystal Structure
Analysis: Two Independent Refinements Of The Structure
Of Poplar Plastocyanin At 173k
pdb|1PND|A Chain A, Accuracy And Precision In Protein Crystal Structure
Analysis: Two Independent Refinements Of The Structure
Of Poplar Plastocyanin At 173k
pdb|2PCY|A Chain A, The Crystal Structure Of Poplar Apoplastocyanin At 1.8-
Angstroms Resolution. The Geometry Of The Copper-Binding
Site Is Created By The Polypeptide
pdb|3PCY|A Chain A, The Crystal Structure Of Mercury-Substituted Poplar
Plastocyanin At 1.9-Angstroms Resolution
pdb|4PCY|A Chain A, Crystal Structure Analyses Of Reduced (Cui) Poplar
Plastocyanin At Six Ph Values
pdb|5PCY|A Chain A, Crystal Structure Analyses Of Reduced (Cui) Poplar
Plastocyanin At Six Ph Values
pdb|6PCY|A Chain A, Crystal Structure Analyses Of Reduced (Cui) Poplar
Plastocyanin At Six Ph Values
pdb|4DP7|X Chain X, The 1.08 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin A At Ph 4.0
pdb|4DP8|X Chain X, The 1.07 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin A At Ph 4.0
pdb|4DP9|X Chain X, The 1.00 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin A At Ph 6.0
pdb|4DPA|X Chain X, The 1.05 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin A At Ph 6.0
pdb|4DPB|X Chain X, The 1.00 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin A At Ph 8.0
pdb|4DPC|X Chain X, The 1.06 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin A At Ph 8.0
Length = 99
Score = 31.6 bits (70), Expect = 0.79, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 297 PQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIP-S 355
P S+ E+ + +++ GF + ED+ +D + + ++L NA G FE+ S
Sbjct: 16 PSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALS 75
Query: 356 NFDEQVFIC 364
N E F C
Sbjct: 76 NKGEYSFYC 84
>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P21 Crystal Form
pdb|3VEK|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
pdb|3VEK|F Chain F, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
Length = 119
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249
+R C +CG + TP RR G LCNACGL G R L +
Sbjct: 2 ARECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 44
>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural
Basis For The Gata-1FRIEND OF GATA INTERACTION
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249
+R C +CG + TP RR G LCNACGL G R L +
Sbjct: 4 ARECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46
>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of Murine
Gata-1, Nmr, 25 Structures
Length = 46
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDL 247
+R C +CG + TP RR G LCNACGL G R L
Sbjct: 4 ARECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQNRPL 44
>pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein-Encoded Homing
Endonuclease Pi-Pfui
Length = 454
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 314 DGFACPLPIQEDNSLM--------NLDDEDLQEAMDE-LANASGSDFEIPSNFD 358
DG L ++E +SL+ NL +E+ +E +++ L+N G +F +P NF+
Sbjct: 292 DGIDYVLHVEEYSSLLRFYELIGKNLQNEEKREKLEKVLSNHKGGNFGLPLNFN 345
>pdb|4DP0|X Chain X, The 1.5 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin B At Ph 4.0
pdb|4DP1|X Chain X, The 1.35 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin B At Ph 4.0
pdb|4DP2|X Chain X, The 1.8 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin B At Ph 6.0
pdb|4DP4|X Chain X, The 1.54 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin B At Ph 6.0
pdb|4DP5|X Chain X, The 1.88 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin B At Ph 8.0
pdb|4DP6|X Chain X, The 1.67 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin B At Ph 8.0
Length = 99
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 297 PQNHSMRSNEQYLLESDDGFACPLPIQEDNSLMNLDDEDLQEAMDELANASGSDFEIP-S 355
P S+ + E+ + +++ GF + ED +D + + ++L NA G FE+ S
Sbjct: 16 PSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVDVSKISMSEEDLLNAKGETFEVALS 75
Query: 356 NFDEQVFIC 364
+ E F C
Sbjct: 76 DKGEYTFYC 84
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2
Length = 227
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 283 EQGSPHETKPAPLDPQNHSMRSNEQYLLESDDGFACPLPIQEDN 326
+ GSP E P L P NHS+ + Q + S+ F C + E N
Sbjct: 2 DTGSPAELSPTTLSPVNHSL--DLQPVTYSEPAFWCSIAYYELN 43
>pdb|2L6Y|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 39
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236
+R C +CG + TP RR G LCNACGL
Sbjct: 2 ARECVNCGATA--TPLWRRDRTG-HYLCNACGL 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,550,552
Number of Sequences: 62578
Number of extensions: 345862
Number of successful extensions: 473
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 20
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)