Query 017834
Match_columns 365
No_of_seqs 286 out of 893
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:41:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 1E-17 3.5E-22 128.7 4.5 54 204-260 7-60 (63)
2 1gnf_A Transcription factor GA 99.7 8.7E-18 3E-22 121.7 3.8 43 204-249 4-46 (46)
3 2vut_I AREA, nitrogen regulato 99.7 1.2E-17 4E-22 119.5 3.0 41 205-248 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.7 4.1E-17 1.4E-21 126.4 4.0 53 204-259 9-61 (66)
5 2kae_A GATA-type transcription 99.5 1.1E-15 3.6E-20 120.0 2.1 46 204-251 8-53 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 8.8E-15 3E-19 124.1 4.1 55 204-261 59-113 (115)
7 4hc9_A Trans-acting T-cell-spe 99.4 1.8E-13 6.2E-18 116.0 5.2 62 204-268 5-66 (115)
8 3ogk_Q JAZ1 incomplete degron 97.2 7.2E-05 2.5E-09 46.3 0.9 22 138-160 1-22 (22)
9 3ogl_Q JAZ1 incomplete degron 96.8 0.00061 2.1E-08 41.6 2.0 18 136-153 4-21 (21)
10 2yrk_A Zinc finger homeobox pr 54.7 0.59 2E-05 34.8 -3.4 37 222-258 7-43 (55)
11 1pft_A TFIIB, PFTFIIBN; N-term 49.6 2.9 0.0001 29.3 -0.4 34 204-242 5-38 (50)
12 1dl6_A Transcription factor II 48.8 8.4 0.00029 28.3 2.0 34 204-242 11-44 (58)
13 2owa_A Arfgap-like finger doma 36.6 21 0.00072 30.7 2.9 37 204-244 36-72 (138)
14 3cw2_K Translation initiation 36.2 11 0.00037 32.6 1.0 31 204-237 103-133 (139)
15 2iqj_A Stromal membrane-associ 35.7 19 0.00066 30.7 2.5 37 204-244 27-63 (134)
16 3h0g_L DNA-directed RNA polyme 34.7 11 0.00036 28.7 0.6 42 195-243 12-53 (63)
17 1twf_L ABC10-alpha, DNA-direct 34.7 7.7 0.00026 29.8 -0.2 30 201-237 25-54 (70)
18 2crr_A Stromal membrane-associ 33.7 26 0.00087 30.2 3.0 37 204-244 29-65 (141)
19 2crw_A ARF GAP 3, ADP-ribosyla 32.8 24 0.00082 30.8 2.6 37 204-244 29-65 (149)
20 2ds5_A CLPX, ATP-dependent CLP 32.6 19 0.00065 26.1 1.6 31 205-237 12-42 (51)
21 2d74_B Translation initiation 31.8 11 0.00039 32.8 0.4 30 205-237 105-134 (148)
22 1nee_A EIF-2-beta, probable tr 31.8 12 0.00039 32.4 0.4 30 205-237 103-132 (138)
23 1ovx_A ATP-dependent CLP prote 31.8 18 0.00063 27.7 1.5 33 204-238 18-50 (67)
24 2olm_A Nucleoporin-like protei 31.2 24 0.00083 30.2 2.4 36 204-243 25-60 (140)
25 3sub_A ADP-ribosylation factor 30.1 29 0.001 30.8 2.8 37 204-244 22-58 (163)
26 1k81_A EIF-2-beta, probable tr 28.5 6.8 0.00023 26.3 -1.2 29 206-238 2-31 (36)
27 2ctu_A Zinc finger protein 483 27.9 22 0.00074 24.4 1.3 41 204-247 18-58 (73)
28 1sse_A AP-1 like transcription 27.6 14 0.00049 25.0 0.2 16 349-364 9-25 (35)
29 3dwd_A ADP-ribosylation factor 27.4 32 0.0011 30.1 2.5 37 204-244 38-74 (147)
30 3k7a_M Transcription initiatio 26.3 16 0.00056 35.1 0.5 34 204-241 21-55 (345)
31 2lma_A THP5 peptide; CD4+, imm 26.1 11 0.00037 23.6 -0.5 19 11-29 1-19 (26)
32 2p57_A GTPase-activating prote 26.0 27 0.00093 30.3 1.8 37 204-244 37-73 (144)
33 3cng_A Nudix hydrolase; struct 25.8 18 0.00062 30.8 0.6 32 204-237 3-34 (189)
34 3o47_A ADP-ribosylation factor 25.7 25 0.00086 33.0 1.7 37 204-244 37-73 (329)
35 2b0o_E UPLC1; arfgap, structur 25.2 36 0.0012 31.2 2.6 36 204-243 42-77 (301)
36 2jrb_A ORF 1 protein; RNA bind 25.0 49 0.0017 26.6 3.0 25 74-100 46-70 (88)
37 2zjr_Z 50S ribosomal protein L 24.5 13 0.00045 27.7 -0.4 22 204-236 30-51 (60)
38 1qyp_A RNA polymerase II; tran 23.0 8.4 0.00029 27.7 -1.7 37 204-240 15-55 (57)
39 2lvu_A Zinc finger and BTB dom 28.0 18 0.00063 19.8 0.0 17 229-245 3-19 (26)
40 2lcq_A Putative toxin VAPC6; P 22.1 16 0.00055 31.2 -0.4 29 204-240 132-160 (165)
41 3v2d_5 50S ribosomal protein L 20.4 16 0.00056 27.2 -0.7 21 204-235 30-50 (60)
42 2k1p_A Zinc finger RAN-binding 20.2 25 0.00087 22.9 0.3 23 204-236 6-28 (33)
43 2lk0_A RNA-binding protein 5; 20.1 22 0.00074 23.1 -0.0 24 203-236 4-27 (32)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.69 E-value=1e-17 Score=128.66 Aligned_cols=54 Identities=30% Similarity=0.540 Sum_probs=46.7
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCcccccccc
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE 260 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q~~ 260 (365)
...|+||+++ .||+||+||+|+ +|||||||+|++++++|+++.....|....+.
T Consensus 7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 6799999998 699999999996 99999999999999999998877666655443
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.69 E-value=8.7e-18 Score=121.69 Aligned_cols=43 Identities=44% Similarity=0.832 Sum_probs=40.2
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCc
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k 249 (365)
...|+||+++ .||+||+||+|+ +|||||||||++++++|+++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 5689999998 699999999996 999999999999999999875
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.68 E-value=1.2e-17 Score=119.45 Aligned_cols=41 Identities=44% Similarity=0.878 Sum_probs=38.5
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCC
Q 017834 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248 (365)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~ 248 (365)
..|++|+++ .||+||+||+|+ +|||||||+|++|+++|+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 579999998 799999999996 99999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.65 E-value=4.1e-17 Score=126.36 Aligned_cols=53 Identities=36% Similarity=0.648 Sum_probs=46.7
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCccccccc
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQH 259 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q~ 259 (365)
...|+||+++ .||+||+||+|. +|||||||||++++++|+++.....|....+
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R 61 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNR 61 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccccc
Confidence 6799999998 699999999995 9999999999999999999987766654443
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.54 E-value=1.1e-15 Score=119.97 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=40.0
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA 251 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~ 251 (365)
...|+||+++ .||+||+||.+..+|||||||||++++++|++....
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~ 53 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN 53 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence 6899999998 699999954444499999999999999999987764
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.49 E-value=8.8e-15 Score=124.09 Aligned_cols=55 Identities=29% Similarity=0.550 Sum_probs=47.5
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCccccccccc
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q~~~ 261 (365)
...|+||+++ .||+||+||+| .+|||||||||++|++.|+++.....|....+.+
T Consensus 59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~ 113 (115)
T 4hc9_A 59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 113 (115)
T ss_dssp TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence 5799999998 69999999999 8999999999999999999998877776655543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.40 E-value=1.8e-13 Score=116.03 Aligned_cols=62 Identities=34% Similarity=0.612 Sum_probs=48.6
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCCCcccccccccCCCCCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELETSSDIK 268 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q~~~~~~~d~~ 268 (365)
.+.|.|||++ .||+||+||.| .+|||||||||++++..|++.+.+..............++.
T Consensus 5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~ 66 (115)
T 4hc9_A 5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQ 66 (115)
T ss_dssp -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTC
T ss_pred CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccccccccCCCcC
Confidence 6799999998 69999999999 79999999999999999998876654443333344444443
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=97.23 E-value=7.2e-05 Score=46.28 Aligned_cols=22 Identities=59% Similarity=0.709 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhccccCCceeee....
Q 017834 138 RIASLVRFREKRKERSFEKKIRY.... 160 (365)
Q Consensus 138 R~aSL~RfreKRk~R~f~KkirY.... 160 (365)
|++||+||.||||+|...+ .+|
T Consensus 1 Rk~SLqRFleKRk~R~~~~-~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK-APYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhcc-CCC....
Confidence 6799999999999998777 455
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=96.76 E-value=0.00061 Score=41.64 Aligned_cols=18 Identities=61% Similarity=0.695 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHhhcccc.....
Q 017834 136 SQRIASLVRFREKRKERS..... 153 (365)
Q Consensus 136 ~~R~aSL~RfreKRk~R~..... 153 (365)
.+|++||+||.||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 379999999999999874
No 10
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=54.66 E-value=0.59 Score=34.80 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=25.3
Q ss_pred cCCCCCchhchHhhhhHHhcCCCCCCCcCCCcccccc
Q 017834 222 RGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQ 258 (365)
Q Consensus 222 rGP~G~~tLCNACGl~~~~~~~~r~~~k~~~~i~~~q 258 (365)
.+|+||++-|.-||..|--+-.+++-.=..++|..-+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk 43 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARLSIRDHIFSKQHISKVR 43 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSSCHHHHHTSHHHHHHHH
T ss_pred CCCCCCCccccccCcccccccchhhhhccHHHHHHHH
Confidence 5788988999999999887766666333333444443
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=49.61 E-value=2.9 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.551 Sum_probs=23.2
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~ 242 (365)
...|.+|+. +++-...-.| ...|..||+-|..+.
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCcccccc
Confidence 467999985 3444443445 789999999886543
No 12
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=48.76 E-value=8.4 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=25.6
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~ 242 (365)
...|..|+. ++.....-.| .+.|..||+-+..+.
T Consensus 11 ~~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~~ 44 (58)
T 1dl6_A 11 RVTCPNHPD----AILVEDYRAG-DMICPECGLVVGDRV 44 (58)
T ss_dssp CCSBTTBSS----SCCEECSSSC-CEECTTTCCEECCSC
T ss_pred cccCcCCCC----CceeEeCCCC-eEEeCCCCCEEeccc
Confidence 458999986 3466665667 799999999987643
No 13
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=36.62 E-value=21 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=32.0
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (365)
+..|..||.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 6899999986 7999999999 89999999888876654
No 14
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=36.20 E-value=11 Score=32.55 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=20.2
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhh
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (365)
-..|..|+.. .|-+-+.+ .---.-|+|||-.
T Consensus 103 yVlC~~C~sP--dT~l~k~~-r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSL--DTILKKEK-KSWYIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSS--CCCSCSSC-STTTSSCCC----
T ss_pred eeECCCCCCc--CcEEEEeC-CeEEEEecCCCCC
Confidence 3689999998 58888864 2224789999964
No 15
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=35.75 E-value=19 Score=30.66 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=32.0
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (365)
+..|..||.. -|.|=.-.-| ..||-.|.-..+.-|++
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 6899999986 7999999999 89999998888876654
No 16
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.72 E-value=11 Score=28.68 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=24.5
Q ss_pred CCCCCCcccccccccccccccCCCccccCCCCCchhchHhhhhHHhcCC
Q 017834 195 NGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (365)
Q Consensus 195 ~~~~~~~~~~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~ 243 (365)
.+...+....-.|..||.. .... .+...-|.-||-+.-.|..
T Consensus 12 ~~~~~~~~v~Y~C~~Cg~~--~~l~-----~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 12 FNPPRPATMIYLCADCGAR--NTIQ-----AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp -------CCCCBCSSSCCB--CCCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred cCCCCCCCeEEECCCCCCe--eecC-----CCCceECCCCCcEEEEEec
Confidence 3334455568999999986 2322 2346789999987665543
No 17
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=34.66 E-value=7.7 Score=29.83 Aligned_cols=30 Identities=23% Similarity=0.591 Sum_probs=20.2
Q ss_pred cccccccccccccccCCCccccCCCCCchhchHhhhh
Q 017834 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (365)
Q Consensus 201 ~~~~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (365)
....-.|..||.. .... .+...-|..||-+
T Consensus 25 ~~v~Y~C~~CG~~--~e~~-----~~d~irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSK--LSLS-----RTDAVRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCE--ECCC-----TTSTTCCSSSCCC
T ss_pred ceEEEECCCCCCc--ceeC-----CCCCccCCCCCce
Confidence 3457899999986 2222 2334689999983
No 18
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.74 E-value=26 Score=30.16 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=31.7
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (365)
+..|..||.. -|.|=.-.-| ..||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 6899999986 7999998899 89999998888876653
No 19
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.75 E-value=24 Score=30.76 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=32.1
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (365)
+..|..|+.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 6899999985 7999999999 89999998888876654
No 20
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=32.60 E-value=19 Score=26.07 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=21.8
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhhh
Q 017834 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (365)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (365)
.+|+-||.+.......=.|| | ...||-|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 58999998754444555565 3 5799999543
No 21
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=31.82 E-value=11 Score=32.80 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=22.1
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhhh
Q 017834 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (365)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (365)
..|..|+.. .|-+-+.+ .---.-|+|||-.
T Consensus 105 VlC~~C~sP--dT~L~k~~-r~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRD-RFHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCT--TCCCCBSS-SSBCCCCSSSCCC
T ss_pred EECCCCCCc--CcEEEEeC-CEEEEEecCCCCC
Confidence 579999998 58888754 2224689999854
No 22
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=31.79 E-value=12 Score=32.36 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=22.1
Q ss_pred cccccccccccCCCccccCCCCCchhchHhhhh
Q 017834 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (365)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (365)
..|..|+.. .|-+-+.+ .---.-|+|||-.
T Consensus 103 VlC~~C~sP--dT~l~k~~-r~~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRP--DTRIIREG-RISLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSC--SSCCEEET-TTTEEECSTTSCC
T ss_pred EECCCCCCc--CcEEEEcC-CeEEEEccCCCCC
Confidence 579999998 58888864 2224689999853
No 23
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=31.77 E-value=18 Score=27.70 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=22.8
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhH
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~ 238 (365)
..+|+-||.+.......=.|| | ..+||-|=...
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 358999998754444555566 3 57999996544
No 24
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=31.20 E-value=24 Score=30.25 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=30.7
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~ 243 (365)
+..|..||.. -|.|=.-.-| ..||-.|.-..+.-|+
T Consensus 25 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 6899999985 7999998999 8999999877776554
No 25
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=30.15 E-value=29 Score=30.79 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=31.5
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (365)
...|..|+.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 22 N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 22 NNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCTT
T ss_pred CCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCCC
Confidence 6899999986 7999999999 89999998777766653
No 26
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=28.48 E-value=6.8 Score=26.29 Aligned_cols=29 Identities=34% Similarity=0.770 Sum_probs=19.9
Q ss_pred ccccccccccCCCccccCCCCCc-hhchHhhhhH
Q 017834 206 ICQHCGISEKLTPAMRRGPAGPR-TLCNACGLMW 238 (365)
Q Consensus 206 ~C~~Cg~t~~~TP~WRrGP~G~~-tLCNACGl~~ 238 (365)
.|..|+.. .|-+-+++ +.- .-|+|||-..
T Consensus 2 lC~~C~~p--eT~l~~~~--~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKP--DTKIIKEG--RVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSC--EEEEEEET--TEEEEEEETTTEEE
T ss_pred CCcCCCCC--CcEEEEeC--CcEEEEhhcCCCcc
Confidence 48889988 47777753 222 4599999654
No 27
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.89 E-value=22 Score=24.39 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=28.6
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCCCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDL 247 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~ 247 (365)
...|..|+..-.....+++ .....|..||..|..+..++.-
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~H 58 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNKD 58 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHHH
Confidence 5789999876433444444 4467999999999877665543
No 28
>1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=27.64 E-value=14 Score=24.97 Aligned_cols=16 Identities=50% Similarity=0.972 Sum_probs=12.2
Q ss_pred CccccCCCCCccce-ec
Q 017834 349 SDFEIPSNFDEQVF-IC 364 (365)
Q Consensus 349 t~~~ip~~fd~~~~-~~ 364 (365)
-+|+.-..||+||+ .|
T Consensus 9 ~~~nF~~~FDEqV~~FC 25 (35)
T 1sse_A 9 NDFNFENQFDEQVSEFC 25 (35)
T ss_dssp CCGGGSSSCCCSSSHHH
T ss_pred cccChhhhHHHHhhHHH
Confidence 35667799999998 44
No 29
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=27.44 E-value=32 Score=30.06 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.7
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (365)
+..|..|+.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 38 N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 38 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 74 (147)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCCC
Confidence 6799999986 7999999999 89999999888776653
No 30
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=26.31 E-value=16 Score=35.05 Aligned_cols=34 Identities=29% Similarity=0.744 Sum_probs=23.1
Q ss_pred ccccccccccccCCC-ccccCCCCCchhchHhhhhHHhc
Q 017834 204 SRICQHCGISEKLTP-AMRRGPAGPRTLCNACGLMWANK 241 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP-~WRrGP~G~~tLCNACGl~~~~~ 241 (365)
...|.+||.+ +| .-.+--.| .+.|..||+-..-+
T Consensus 21 ~~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl~e~ 55 (345)
T 3k7a_M 21 VLTCPECKVY---PPKIVERFSEG-DVVCALCGLVLSDK 55 (345)
T ss_dssp CCCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCCCCC
T ss_pred CCcCcCCCCC---CCceEEECCCC-CEecCCCCeEcccc
Confidence 4579999874 33 33444566 78999999877543
No 31
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=26.09 E-value=11 Score=23.56 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=15.2
Q ss_pred CCCCCCCcCCCCCCCCccc
Q 017834 11 ARPYIDTEEHDVAQTPIPI 29 (365)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (365)
|+||+.||--|+|.+-.|-
T Consensus 1 wrpylqteyydvmtvispp 19 (26)
T 2lma_A 1 WRPYLQTEYYDVMTVISPP 19 (26)
T ss_dssp CCTTHHHHHHTTSTTSSGG
T ss_pred CCccccceeeeeEEEeCCc
Confidence 8999999999999764443
No 32
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=25.99 E-value=27 Score=30.31 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=31.8
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (365)
+..|..||.. -|.|=.-.-| ..||-.|.-..+.-|++
T Consensus 37 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 37 NKACFDCGAK---NPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 6899999986 7999988889 89999999888876654
No 33
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=25.83 E-value=18 Score=30.84 Aligned_cols=32 Identities=25% Similarity=0.689 Sum_probs=23.8
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhh
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (365)
.+.|..||.. .+.....|..+....|-.||.+
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTEE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCCc
Confidence 4689999986 4455556667777899999943
No 34
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=25.74 E-value=25 Score=33.00 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.5
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (365)
+..|..||.. -|.|=.-.-| -.||-.|.-..+.-|.+
T Consensus 37 n~~c~dc~~~---~~~~~~~~~~-~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 37 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEecCC-EEEChhhhhhhcccCCC
Confidence 6799999986 7999998889 89999998888776554
No 35
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=25.18 E-value=36 Score=31.19 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=30.3
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHhcCC
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~ 243 (365)
...|..||.. -|.|-.-.-| ..+|-.|--..+.-|.
T Consensus 42 n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 42 NSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 6899999986 6999999999 8999999766665454
No 36
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=25.01 E-value=49 Score=26.57 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.2
Q ss_pred CccceEEEccEEEEeCCCChHHHHHHH
Q 017834 74 TSELTVAYEGEVYVFPAVTPHKVQALL 100 (365)
Q Consensus 74 t~QLTIfY~G~V~VFD~VppeKaqaIm 100 (365)
.+-|++.|+|+++.|++ .+|.++.+
T Consensus 46 PakLsf~~eGeiksF~d--kqkl~efi 70 (88)
T 2jrb_A 46 PAKLSITIDGETKVFHD--KTKFTQYL 70 (88)
T ss_dssp TTEEEEESSSCEEEESS--HHHHHHHH
T ss_pred ceeeEEEECCeEeccCC--HHHHHHHH
Confidence 56799999999999983 45555543
No 37
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.50 E-value=13 Score=27.68 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=16.9
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhh
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl 236 (365)
...|.+||.. -=+..+|-.||.
T Consensus 30 l~~c~~cG~~-----------~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGK-----------KLSHHICPNCGY 51 (60)
T ss_dssp CEECTTTCCE-----------ECTTBCCTTTCB
T ss_pred ceECCCCCCE-----------eCCceEcCCCCc
Confidence 5789999975 223689999994
No 38
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=23.00 E-value=8.4 Score=27.72 Aligned_cols=37 Identities=24% Similarity=0.607 Sum_probs=25.6
Q ss_pred ccccccccccccC--CCccccCCCCCc--hhchHhhhhHHh
Q 017834 204 SRICQHCGISEKL--TPAMRRGPAGPR--TLCNACGLMWAN 240 (365)
Q Consensus 204 ~~~C~~Cg~t~~~--TP~WRrGP~G~~--tLCNACGl~~~~ 240 (365)
...|..||-.+.. +-+||...++.. ..|-.||..|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5789999975211 347887766632 589999988764
No 39
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.05 E-value=18 Score=19.78 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.5
Q ss_pred hhchHhhhhHHhcCCCC
Q 017834 229 TLCNACGLMWANKGTLR 245 (365)
Q Consensus 229 tLCNACGl~~~~~~~~r 245 (365)
..|+-||..|.....++
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 46889998888766544
No 40
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.09 E-value=16 Score=31.18 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=20.9
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhhhHHh
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN 240 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~ 240 (365)
..+|..||.. ...+ ++.+.|-.||-..++
T Consensus 132 ~y~C~~Cg~~---~~~~-----~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 132 RYVCIGCGRK---FSTL-----PPGGVCPDCGSKVKL 160 (165)
T ss_dssp CEEESSSCCE---ESSC-----CGGGBCTTTCCBEEE
T ss_pred EEECCCCCCc---ccCC-----CCCCcCCCCCCccee
Confidence 6799999975 3333 445799999987543
No 41
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=20.41 E-value=16 Score=27.21 Aligned_cols=21 Identities=33% Similarity=0.831 Sum_probs=16.4
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhh
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACG 235 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACG 235 (365)
...|.+||.. -=+..+|-.||
T Consensus 30 l~~c~~cGe~-----------~~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKAM-----------KPPHTVCPECG 50 (60)
T ss_dssp CEECTTTCCE-----------ECTTSCCTTTC
T ss_pred eeECCCCCCe-----------ecceEEcCCCC
Confidence 5789999975 22367999999
No 42
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.19 E-value=25 Score=22.92 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=17.5
Q ss_pred ccccccccccccCCCccccCCCCCchhchHhhh
Q 017834 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (365)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl 236 (365)
.|.|..|+.. .-.|| +-||.||.
T Consensus 6 DW~C~~C~~~---Nfa~R-------~~C~~C~~ 28 (33)
T 2k1p_A 6 DWQCKTCSNV---NWARR-------SECNMCNT 28 (33)
T ss_dssp SCBCSSSCCB---CCTTC-------SBCSSSCC
T ss_pred CcccCCCCCc---ccccc-------ccccccCC
Confidence 7999999975 44444 68998875
No 43
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=20.13 E-value=22 Score=23.10 Aligned_cols=24 Identities=25% Similarity=0.646 Sum_probs=17.4
Q ss_pred cccccccccccccCCCccccCCCCCchhchHhhh
Q 017834 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (365)
Q Consensus 203 ~~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl 236 (365)
..|.|..|+.. .-.+ +..|+.||.
T Consensus 4 gDW~C~~C~~~---Nfa~-------r~~C~~C~~ 27 (32)
T 2lk0_A 4 EDWLCNKCCLN---NFRK-------RLKCFRCGA 27 (32)
T ss_dssp SEEECTTTCCE---EETT-------CCBCTTTCC
T ss_pred CCCCcCcCcCC---cChh-------cceecCCCC
Confidence 37999999985 3333 368998885
Done!