BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017835
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 271 bits (693), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 141/358 (39%), Positives = 211/358 (58%), Gaps = 7/358 (1%)
Query: 9 NDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHP 68
N+ E+ ++QA ++ N+++FV+SMSLK +I++ IP+IIHNH KP+TL+ L++ LQI
Sbjct: 6 NNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPS 65
Query: 69 TKTQCVYHLMRILVHSGFFALQKTSENE-QEEGYILTSASKLLLKDHPLSLAPFLLAMLD 127
TK V LMR L H+GFF + E E +EE Y LT AS+LL+K L LAP + +LD
Sbjct: 66 TKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVLD 125
Query: 128 PILTKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTS 187
P L+ +H + W+ FA+ G + W++ + N +N+ +ASD+++ +
Sbjct: 126 PTLSTSFHNLKKWV----YEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMIN 181
Query: 188 SALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKY 247
A+ C VFE I + FP + C VFD+P VV +L + NL Y
Sbjct: 182 LAM-KDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTY 240
Query: 248 VGGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEK 307
VGG+MF ++P ADAVL+K VLH+W D++C+KIL D+ + +K
Sbjct: 241 VGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKK 300
Query: 308 ADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+ + T+ +L M+ + + V G+ERNE+EW KLF EAGF DYKI+ G+ SLIE+YP
Sbjct: 301 DENQLTQIKLLMN-VTISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIYP 357
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 210/357 (58%), Gaps = 10/357 (2%)
Query: 9 NDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHP 68
N E+ ++QA ++ +I++F++SMSLK A+++ IP+II NH KP++L+ L++ LQ+
Sbjct: 6 NGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPS 65
Query: 69 TKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP 128
+K V LMR L H+GFF + ++EE Y LT AS+LL++ L LAP + +LDP
Sbjct: 66 SKIGNVRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRGSDLCLAPMVECVLDP 121
Query: 129 ILTKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSS 188
L+ +H++ WI F + G FWD+ + N FN+ MASD++L +
Sbjct: 122 TLSGSYHELKKWIYEEDLTL----FGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 189 ALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYV 248
AL C VF+ A I + FP ++C VFD+P VV +L + NL YV
Sbjct: 178 AL-RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYV 236
Query: 249 GGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKA 308
GG+MF +IP ADAVL+K +LHNW D++C++IL D+ ++ +K
Sbjct: 237 GGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD 296
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+ + T+ +L MD+ M L G+ERNE+EW KLF EAGF YKI+ + G SLIE+YP
Sbjct: 297 ENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 257 bits (657), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 204/357 (57%), Gaps = 10/357 (2%)
Query: 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCV 74
EL +Q H++ ++++FV+SM+LK A++LGI D IHNH KPMTL++L ++L++HP+K +
Sbjct: 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 65
Query: 75 YHLMRILVHSGFFA----LQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPIL 130
+ +R+L H+GFFA K + E+E Y LT SKLL+ P L+ + L P
Sbjct: 66 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 125
Query: 131 TKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLN--HFFNEGMASDTRLTSS 188
W W F G +FWD+ +++ + F + MASD+R+
Sbjct: 126 LDMWSSSKKWFNE---DKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-K 181
Query: 189 ALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYV 248
++ + K VFE I + FPH++CTVFDQP VV +L N NL +V
Sbjct: 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFV 241
Query: 249 GGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKA 308
GG+MF++IP ADAVL+K VLH+WNDE+ +KIL DI ++
Sbjct: 242 GGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD 301
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
D TE QL D++M+ + G+ER ++EW KL ++AGFS YKIT + G +SLIEVYP
Sbjct: 302 DRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 257 bits (657), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 204/357 (57%), Gaps = 10/357 (2%)
Query: 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCV 74
EL +Q H++ ++++FV+SM+LK A++LGI D IHNH KPMTL++L ++L++HP+K +
Sbjct: 5 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 64
Query: 75 YHLMRILVHSGFFA----LQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPIL 130
+ +R+L H+GFFA K + E+E Y LT SKLL+ P L+ + L P
Sbjct: 65 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 124
Query: 131 TKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLN--HFFNEGMASDTRLTSS 188
W W F G +FWD+ +++ + F + MASD+R+
Sbjct: 125 LDMWSSSKKWFNE---DKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-K 180
Query: 189 ALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYV 248
++ + K VFE I + FPH++CTVFDQP VV +L N NL +V
Sbjct: 181 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFV 240
Query: 249 GGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKA 308
GG+MF++IP ADAVL+K VLH+WNDE+ +KIL DI ++
Sbjct: 241 GGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD 300
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
D TE QL D++M+ + G+ER ++EW KL ++AGFS YKIT + G +SLIEVYP
Sbjct: 301 DRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 357
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 204/357 (57%), Gaps = 10/357 (2%)
Query: 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCV 74
EL +Q H++ ++++FV+SM+LK A++LGI D IHNH KPMTL++L ++L++HP+K +
Sbjct: 2 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 61
Query: 75 YHLMRILVHSGFFA----LQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPIL 130
+ +R+L H+GFFA K + E+E Y LT SKLL+ P L+ + L P
Sbjct: 62 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 121
Query: 131 TKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLN--HFFNEGMASDTRLTSS 188
W W F G +FWD+ +++ + F + MASD+R+
Sbjct: 122 LDMWSSSKKWFNE---DKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-K 177
Query: 189 ALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYV 248
++ + K VFE I + FPH++CTVFDQP VV +L N NL +V
Sbjct: 178 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFV 237
Query: 249 GGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKA 308
GG+MF++IP ADAVL+K VLH+WNDE+ +KIL DI ++
Sbjct: 238 GGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD 297
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
D TE QL D++M+ + G+ER ++EW KL ++AGFS YKIT + G +SLIEVYP
Sbjct: 298 DRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 354
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 201/351 (57%), Gaps = 10/351 (2%)
Query: 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCV 74
E+ ++QA ++ +I++F++S SLK A++ IP+II NH KP++L+ L++ LQ+ +K V
Sbjct: 12 EIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 75 YHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPW 134
L R L H+GFF + ++EE Y LT AS+LL++ L LAP + +LDP L+ +
Sbjct: 72 RRLXRYLAHNGFFEII----TKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLSGSY 127
Query: 135 HQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKC 194
H++ WI F + G FWD+ + N FN+ ASD++L + AL C
Sbjct: 128 HELKKWIYEEDLTL----FGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLAL-RDC 182
Query: 195 KDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE 254
VF+ A I + FP ++C VFD+P VV +L + NL YVGG+ F
Sbjct: 183 DFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFT 242
Query: 255 AIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKADYKTTE 314
+IP ADAVL+K +LHNW D++C++IL D ++ +K + + T+
Sbjct: 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQ 302
Query: 315 TQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+L D+ L G+ERNE+EW KLF EAGF YKI+ + G SLIE+YP
Sbjct: 303 IKLLXDVNXACL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 150/330 (45%), Gaps = 23/330 (6%)
Query: 34 MSLKCAIQLGIPDIIHNHAKPMTL-------NQLLTTLQIHPTKTQCVYHLMRILVHSGF 86
M+LK AI+L + +I+ P QL TT +P + ++R+L
Sbjct: 36 MALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT---NPEAPVMLDRVLRLLASYSV 92
Query: 87 --FALQKTSENEQEEGYILTSASKLLLKDH-PLSLAPFLLAMLDPILTKPWHQVSTWIQN 143
+ L++ + E Y L K L K+ +SLAPFLL D +L +PW + I
Sbjct: 93 VTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAI-- 150
Query: 144 XXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEXXXX 203
F +GMN +DY + R+N FN+GM+S++ +T ++ + + FE
Sbjct: 151 ---LEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL-EMYNGFEGLTT 206
Query: 204 XXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVL 263
AS I K+P I FD PHV+ D + ++++GG+MF+ +P DA+
Sbjct: 207 IVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIF 266
Query: 264 IKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLM 323
IK + H+W+DE C+K+L + + T+ + D LM
Sbjct: 267 IKWICHDWSDEHCLKLL---KNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALM 323
Query: 324 MVL-VKGEERNEKEWAKLFFEAGFSDYKIT 352
+ G+ER EKE+ L +GF +K+
Sbjct: 324 LAYNPGGKERTEKEFQALAMASGFRGFKVA 353
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 18/326 (5%)
Query: 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTS 93
M LK A++L + +II ++ + Q+ T L R+L + + S
Sbjct: 34 MILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCS 93
Query: 94 ENEQEEG-----YILTSASKLLLKDH-PLSLAPFLLAMLDPILTKPWHQVSTWIQNXXXX 147
Q++G Y L + +K L+K+ +S++ L D +L + W+ + + +
Sbjct: 94 VRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIP 153
Query: 148 XXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEXXXXXXXX 207
F +GM ++Y + R N FN+GM+ + +T ++ FE
Sbjct: 154 -----FNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEGLKSLVDV 207
Query: 208 XXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCV 267
+ I K+P I+ FD PHV+ D S +++VGG+MF +IP ADAV +K +
Sbjct: 208 GGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWI 267
Query: 268 LHNWNDEECVKILXX-XXXXXXXXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLMMVL 326
H+W+DE C+K L + +S A T+ + +D++M+
Sbjct: 268 CHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLA----TKGVVHIDVIMLAH 323
Query: 327 -VKGEERNEKEWAKLFFEAGFSDYKI 351
G+ER +KE+ L AGF +K+
Sbjct: 324 NPGGKERTQKEFEDLAKGAGFQGFKV 349
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 145/332 (43%), Gaps = 18/332 (5%)
Query: 29 SFVNSMSLKCAIQLGIPDI-IHNHAKPMTLNQLLTTL--QIHPTKTQCVYHLMRILVHSG 85
S V M+LK AI+LG+ +I + K +T ++ L +P V ++R+L
Sbjct: 30 SSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYN 89
Query: 86 FFA--LQKTSENEQEEGYILTSASKLLLKDH-PLSLAPFLLAMLDPILTKPWHQVSTWIQ 142
+++ + Y K L + +S+A L D +L + W+ + +
Sbjct: 90 VVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVL 149
Query: 143 NXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEXXX 202
+ F +GM+ ++Y + R N FNEGM + + + + L+ + FE
Sbjct: 150 DGGIP-----FNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL-ELYHGFEGLG 203
Query: 203 XXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAV 262
+AIA +P I+ FD PHV+++ + +VGG+MF+ +P D +
Sbjct: 204 TLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTI 263
Query: 263 LIKCVLHNWNDEECVKILXXXXXXXXX-XXXXXXXXXXDIKMESEKADYKTTETQLFMDM 321
L+K +LH+W+D+ C +L + E+ +++ +DM
Sbjct: 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEAN----PSSQGVFHVDM 319
Query: 322 LMMVL-VKGEERNEKEWAKLFFEAGFSDYKIT 352
+M+ G ER E+E+ L AGF+ K T
Sbjct: 320 IMLAHNPGGRERYEREFQALARGAGFTGVKST 351
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 137/325 (42%), Gaps = 17/325 (5%)
Query: 36 LKCAIQLGIPDIIHNHAKP---MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT 92
L AI L + +II P M+ +++ + L + L R+L +++ +
Sbjct: 41 LNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS 100
Query: 93 SENEQEEG-----YILTSASKLLLKDHPLS-LAPFLLAMLDPILTKPWHQVSTWIQNXXX 146
+ E+G Y L+ K L+ D LA F + P L + W + +
Sbjct: 101 TTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI 160
Query: 147 XXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEXXXXXXX 206
F HG+ +++ ++ ++N FN+ M D T + + FE
Sbjct: 161 DL----FKNVHGVTKYEFMGKDKKMNQIFNKSMV-DVCATEMKRMLEIYTGFEGISTLVD 215
Query: 207 XXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKC 266
I K+P I+ FD P V+ + +++VGG+MF ++P DA+++K
Sbjct: 216 VGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKA 275
Query: 267 VLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLMMVL 326
V HNW+DE+C++ L + + + K T +D LM +
Sbjct: 276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVST---LDNLMFIT 332
Query: 327 VKGEERNEKEWAKLFFEAGFSDYKI 351
V G ER EK++ KL +GFS +++
Sbjct: 333 VGGRERTEKQYEKLSKLSGFSKFQV 357
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 103/255 (40%), Gaps = 9/255 (3%)
Query: 98 EEGYILTSASKLLLKDHPLS-LAPFLLAMLDPILTKPWHQVSTWIQNXXXXXXXXXFALP 156
E Y L+ K L+ D LA F + P L + W + + F
Sbjct: 111 ERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDL----FKNV 166
Query: 157 HGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEXXXXXXXXXXXXXXXAS 216
HG+ +++ ++ + N FN+ D T + FE
Sbjct: 167 HGVTKYEFXGKDKKXNQIFNKSXV-DVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLE 225
Query: 217 AIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEEC 276
I K+P I+ FD P V+ + +++VGG+ F ++P DA ++K V HNW+DE+C
Sbjct: 226 LIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKC 285
Query: 277 VKILXXXXXXXXXXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336
++ L + + + K T +D L + V G ER EK+
Sbjct: 286 IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVST---LDNLXFITVGGRERTEKQ 342
Query: 337 WAKLFFEAGFSDYKI 351
+ KL +GFS +++
Sbjct: 343 YEKLSKLSGFSKFQV 357
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 105/256 (41%), Gaps = 25/256 (9%)
Query: 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT 92
+ ++ A++LG+P+++ P T L H Q + L+R+L G F
Sbjct: 52 ARAIHVAVELGVPELLQE--GPRTATALAEATGAH---EQTLRRLLRLLATVGVF----- 101
Query: 93 SENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNXXXXXXXXX 152
+ ++ + + S +LL D +A P + W Q++ ++
Sbjct: 102 DDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRT-----GEAS 156
Query: 153 FALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEXXXXXXXXXXXXX 212
F + +G +FW + + FN S LT + + D F
Sbjct: 157 FDVANGTSFWQLTHEDPKARELFNRAXGS-VSLTEAGQVAAAYD-FSGAATAVDIGGGRG 214
Query: 213 XXASAIAKKFPHIECTVFDQPHVVAD----LKSNG---NLKYVGGNMFEAIP-PADAVLI 264
+A+ FP + T+ ++P V + L G + + G+ FE IP AD LI
Sbjct: 215 SLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLI 274
Query: 265 KCVLHNWNDEECVKIL 280
K VLH+W+D++ V+IL
Sbjct: 275 KHVLHDWDDDDVVRIL 290
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 111/298 (37%), Gaps = 50/298 (16%)
Query: 69 TKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP 128
T+ + + L+R LV G E + ++ T +LL DHP +
Sbjct: 64 TRPEALLRLIRHLVAIGLL------EEDAPGEFVPTEVGELLADDHPAA----------- 106
Query: 129 ILTKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMAS--DTRLT 186
+ WH ++ + A+ G + E+ F E +A D R +
Sbjct: 107 --QRAWHDLTQAVARADISFTRLPDAIRTGRPTY-----ESIYGKPFYEDLAGRPDLRAS 159
Query: 187 SSALIHKCKDV-FEXXXXX---------XXXXXXXXXXASAIAKKFPHIECTVFDQPHVV 236
+L+ +DV F+ A+AIA++ PH+ TV + V
Sbjct: 160 FDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTV 219
Query: 237 ADLKS-------NGNLKYVGGNMFEAIP-PADAVLIKCVLHNWNDEECVKILXXXXXXXX 288
+S + + V G+ FE +P ADA+++ VL NW D + V+IL
Sbjct: 220 DTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE 279
Query: 289 XXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346
D+ S + TE +D+ M+V + G R ++W L AG
Sbjct: 280 PGGRILIHERDDLHENSFNEQF--TE----LDLRMLVFLGGALRTREKWDGLAASAGL 331
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 118/342 (34%), Gaps = 50/342 (14%)
Query: 25 NNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHS 84
N+ + V M+L+ A L + D H A TL L HP Q + L+R L
Sbjct: 22 KNLGNLVTPMALRVAATLRLVD--HLLAGADTLAGLADRTDTHP---QALSRLVRHLTVV 76
Query: 85 GFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNX 144
G E +++G L P L LLA P + W ++ + +
Sbjct: 77 GVL------EGGEKQGRPL----------RPTRLG-MLLADGHPAQQRAWLDLNGAVSHA 119
Query: 145 ---------XXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCK 195
+A +G FW+ + L F+ M+ D L A
Sbjct: 120 DLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEA----PA 175
Query: 196 DVFEXXXXXXXXXXXXXXXA--SAIAKKFPHIECTVFD-------QPHVVADLKSNGNLK 246
D ++ +AIA + PH+ T+ + AD +
Sbjct: 176 DAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 235
Query: 247 YVGGNMFEAIP-PADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMES 305
G+ F+ +P AD VL+ VL NW+DE+ + IL D++ +
Sbjct: 236 VAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG 295
Query: 306 EKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347
+ T +D+ M+ + G R E L AG +
Sbjct: 296 ADRFFST-----LLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 332
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 15/151 (9%)
Query: 218 IAKKFPHIECTVFDQPHVVADLKSN-----GNLKYVGGNMFEAIPPADAVLIKCVLHNWN 272
+ ++ P ++ + D+ VVA + + G K V G+ +P AD ++K +LHNW
Sbjct: 202 VLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWG 261
Query: 273 DEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLMMVLVKGEER 332
DE+ V+IL D + +++ E D + G+ER
Sbjct: 262 DEDSVRIL---TNCRRVXPAHGRVLVIDAVVPEGNDAHQSKE----XDFXXLAARTGQER 314
Query: 333 NEKEWAKLFFEAGFSDYKITDVLGVRSLIEV 363
E LF AG ++ V+G S+ +
Sbjct: 315 TAAELEPLFTAAGL---RLDRVVGTSSVXSI 342
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 215 ASAIAKK----FPHIECTVFDQPHVVADLKSNGNLK------YVGGNMF-EAIPPADAVL 263
A A+AK+ +P + TVFD P VV K + + + + G+ F + +P AD +
Sbjct: 190 AGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYI 249
Query: 264 IKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLM 323
+ VLH+W D +C +L I+ ++ TQL+ + M
Sbjct: 250 LARVLHDWADGKCSHLLERIYHTCKPGGGILV-----IESLLDEDRRGPLLTQLY-SLNM 303
Query: 324 MVLVKGEERNEKEWAKLFFEAGFSDYKI 351
+V +G+ER + L AGF D++
Sbjct: 304 LVQTEGQERTPTHYHMLLSSAGFRDFQF 331
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 13/140 (9%)
Query: 216 SAIAKKFPHIECTVFD-------QPHVVADLKSNGNLKYVGGNMFEAIP-PADAVLIKCV 267
+AIA + PH+ T+ + AD + G+ F+ +P AD VL+ V
Sbjct: 198 AAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV 257
Query: 268 LHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLMMVLV 327
L NW+DE+ + IL D++ + + T +D+ +
Sbjct: 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFST-----LLDLRXLTFX 312
Query: 328 KGEERNEKEWAKLFFEAGFS 347
G R E L AG +
Sbjct: 313 GGRVRTRDEVVDLAGSAGLA 332
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 238 DLKSNGNLKYVGGNMFEAIPP-ADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXX 296
D +G + V G+ F+ +P A ++ VLH+W+D V IL
Sbjct: 214 DTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVV--- 270
Query: 297 XXXDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347
+ +E+ D MD+ M+ G+ER+ E +L +AG +
Sbjct: 271 ----LVIEAVAGDEHAGTG---MDLRMLTYFGGKERSLAELGELAAQAGLA 314
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 24 WNNIFSFVNSMSLKCAIQLGIPDIIHN---HAKPMTLNQLLTTLQI 66
+NN+ F S SL+ ++LG+ D +HN H + N LT L++
Sbjct: 557 YNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL 602
>pdb|1XM7|A Chain A, The Crystal Structure Of The Protein Of Unknown Function
Aq665 From Aquifex Aeolicus
pdb|1XM7|B Chain B, The Crystal Structure Of The Protein Of Unknown Function
Aq665 From Aquifex Aeolicus
Length = 195
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 325 VLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+LV G +KE K +F+ + YKI + G R L+ YP
Sbjct: 75 ILVMGNHDKDKESLKEYFDEIYDFYKIIEHKGKRILLSHYP 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,122,064
Number of Sequences: 62578
Number of extensions: 307595
Number of successful extensions: 681
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 25
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)