Query 017835
Match_columns 365
No_of_seqs 190 out of 2067
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 1.6E-41 3.4E-46 303.3 24.3 333 17-365 4-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 3.5E-38 7.5E-43 290.8 23.5 290 31-352 2-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 1.4E-38 3E-43 283.8 18.8 235 98-342 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 2.5E-17 5.4E-22 143.4 16.7 157 198-362 49-234 (238)
5 PLN02233 ubiquinone biosynthes 99.8 4E-17 8.7E-22 146.7 17.6 160 198-364 71-260 (261)
6 PF01209 Ubie_methyltran: ubiE 99.8 3.5E-18 7.5E-23 150.3 10.5 161 198-365 45-233 (233)
7 TIGR00740 methyltransferase, p 99.8 7.1E-18 1.5E-22 150.2 11.7 149 199-355 52-229 (239)
8 PTZ00098 phosphoethanolamine N 99.7 1.3E-16 2.8E-21 143.7 17.3 155 188-355 42-204 (263)
9 TIGR02752 MenG_heptapren 2-hep 99.7 1.4E-16 3.1E-21 141.1 17.0 167 189-365 36-231 (231)
10 PRK15451 tRNA cmo(5)U34 methyl 99.7 4.5E-17 9.7E-22 145.5 11.7 150 199-352 55-229 (247)
11 PLN02244 tocopherol O-methyltr 99.7 7.3E-16 1.6E-20 143.8 18.0 151 199-355 117-280 (340)
12 PRK14103 trans-aconitate 2-met 99.7 4.7E-16 1E-20 139.8 15.7 154 188-350 19-181 (255)
13 PRK15068 tRNA mo(5)U34 methylt 99.7 2.8E-15 6.1E-20 138.4 15.9 152 190-354 114-275 (322)
14 PF12847 Methyltransf_18: Meth 99.7 2.1E-15 4.5E-20 117.9 12.3 98 200-300 1-111 (112)
15 PLN02490 MPBQ/MSBQ methyltrans 99.6 2.6E-15 5.7E-20 138.2 14.8 140 199-355 112-258 (340)
16 TIGR00452 methyltransferase, p 99.6 3.7E-15 8.1E-20 136.2 15.3 152 190-354 113-274 (314)
17 PRK00216 ubiE ubiquinone/menaq 99.6 9.3E-15 2E-19 130.0 17.6 166 190-365 43-238 (239)
18 PLN02336 phosphoethanolamine N 99.6 5.3E-15 1.2E-19 144.8 17.3 152 188-355 256-416 (475)
19 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 1E-14 2.3E-19 128.3 17.1 160 198-365 37-223 (223)
20 smart00828 PKS_MT Methyltransf 99.6 3.9E-15 8.4E-20 131.3 14.1 136 202-355 1-146 (224)
21 PF13489 Methyltransf_23: Meth 99.6 4.1E-15 8.9E-20 123.9 12.4 135 198-350 20-160 (161)
22 PF13847 Methyltransf_31: Meth 99.6 2.2E-15 4.8E-20 124.6 10.4 138 199-345 2-152 (152)
23 PF02353 CMAS: Mycolic acid cy 99.6 4.7E-15 1E-19 133.4 13.2 159 188-355 52-219 (273)
24 PRK11207 tellurite resistance 99.6 1.3E-14 2.8E-19 125.1 15.3 140 188-351 20-168 (197)
25 PLN02396 hexaprenyldihydroxybe 99.6 3.1E-15 6.7E-20 137.3 12.1 148 200-354 131-290 (322)
26 PRK11873 arsM arsenite S-adeno 99.6 1.8E-14 3.8E-19 130.9 16.0 146 198-354 75-231 (272)
27 PRK11036 putative S-adenosyl-L 99.6 9.8E-15 2.1E-19 131.2 13.0 152 199-357 43-211 (255)
28 KOG1540 Ubiquinone biosynthesi 99.6 3E-14 6.5E-19 121.9 14.3 147 198-350 98-278 (296)
29 COG2230 Cfa Cyclopropane fatty 99.6 2.1E-14 4.6E-19 127.3 13.8 155 188-355 62-225 (283)
30 PRK01683 trans-aconitate 2-met 99.6 8.8E-14 1.9E-18 125.3 16.5 106 187-299 20-129 (258)
31 PRK08317 hypothetical protein; 99.6 1E-13 2.2E-18 123.3 16.8 156 190-354 11-177 (241)
32 TIGR02021 BchM-ChlM magnesium 99.6 1E-13 2.3E-18 121.7 14.7 182 161-355 16-208 (219)
33 TIGR00477 tehB tellurite resis 99.5 1.3E-13 2.8E-18 118.7 14.6 141 188-352 20-168 (195)
34 PF08241 Methyltransf_11: Meth 99.5 5E-14 1.1E-18 106.3 10.2 88 205-298 1-95 (95)
35 PF06080 DUF938: Protein of un 99.5 1.7E-13 3.6E-18 115.8 14.3 161 199-365 23-204 (204)
36 PRK06922 hypothetical protein; 99.5 8.9E-14 1.9E-18 135.7 14.4 143 159-306 377-543 (677)
37 KOG4300 Predicted methyltransf 99.5 1E-13 2.2E-18 114.9 11.4 150 199-357 75-236 (252)
38 PRK06202 hypothetical protein; 99.5 4.4E-13 9.6E-18 118.8 16.0 150 199-355 59-224 (232)
39 COG4106 Tam Trans-aconitate me 99.5 1.6E-13 3.4E-18 114.7 11.9 182 174-364 7-202 (257)
40 KOG1270 Methyltransferases [Co 99.5 3.3E-14 7.1E-19 122.5 7.8 143 201-354 90-250 (282)
41 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.2E-14 6.9E-19 121.8 7.0 148 200-354 59-216 (243)
42 PRK05785 hypothetical protein; 99.5 5.1E-13 1.1E-17 117.5 14.9 153 200-365 51-224 (226)
43 TIGR02072 BioC biotin biosynth 99.5 6.7E-13 1.5E-17 118.0 15.1 136 200-352 34-175 (240)
44 PRK10258 biotin biosynthesis p 99.5 1.2E-12 2.7E-17 117.4 16.0 146 188-348 32-182 (251)
45 smart00138 MeTrc Methyltransfe 99.5 9.1E-13 2E-17 118.5 15.0 99 199-300 98-242 (264)
46 TIGR03587 Pse_Me-ase pseudamin 99.5 5E-13 1.1E-17 115.5 12.6 103 198-305 41-147 (204)
47 PRK07580 Mg-protoporphyrin IX 99.5 1E-12 2.2E-17 116.3 14.5 145 199-355 62-216 (230)
48 PLN02336 phosphoethanolamine N 99.5 8.6E-13 1.9E-17 129.3 15.2 143 188-350 27-179 (475)
49 PF08242 Methyltransf_12: Meth 99.5 1.6E-14 3.5E-19 110.3 2.3 87 205-296 1-99 (99)
50 PRK11705 cyclopropane fatty ac 99.5 1.2E-12 2.6E-17 123.7 15.3 153 189-355 158-314 (383)
51 PRK12335 tellurite resistance 99.5 1.3E-12 2.8E-17 119.3 14.9 131 200-352 120-258 (287)
52 PF13649 Methyltransf_25: Meth 99.5 4E-13 8.6E-18 103.0 9.4 88 204-294 1-101 (101)
53 PF08003 Methyltransf_9: Prote 99.5 1.6E-12 3.5E-17 115.4 14.0 154 188-354 105-268 (315)
54 PLN03075 nicotianamine synthas 99.4 2.7E-12 5.8E-17 115.3 14.1 137 199-365 122-274 (296)
55 TIGR00537 hemK_rel_arch HemK-r 99.4 5.9E-12 1.3E-16 107.0 15.6 133 199-364 18-176 (179)
56 PRK08287 cobalt-precorrin-6Y C 99.4 4.9E-12 1.1E-16 108.3 14.8 121 198-354 29-157 (187)
57 PRK04266 fibrillarin; Provisio 99.4 7.9E-12 1.7E-16 109.5 15.7 138 198-363 70-223 (226)
58 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.2E-11 2.5E-16 107.6 15.9 132 199-353 33-187 (213)
59 PLN02585 magnesium protoporphy 99.4 3.5E-12 7.5E-17 116.9 13.3 144 200-356 144-302 (315)
60 TIGR00138 gidB 16S rRNA methyl 99.4 8E-12 1.7E-16 105.9 12.6 119 201-357 43-173 (181)
61 TIGR03438 probable methyltrans 99.4 1E-11 2.2E-16 114.2 14.2 97 199-298 62-175 (301)
62 PF03848 TehB: Tellurite resis 99.4 1.1E-11 2.5E-16 104.6 12.7 108 189-303 21-136 (192)
63 PRK15001 SAM-dependent 23S rib 99.4 2.8E-11 6E-16 113.3 16.0 108 188-300 218-340 (378)
64 PF05891 Methyltransf_PK: AdoM 99.4 6.8E-12 1.5E-16 106.6 10.8 142 199-357 54-205 (218)
65 TIGR02081 metW methionine bios 99.3 1.2E-11 2.6E-16 106.5 12.3 147 199-355 12-169 (194)
66 PRK00107 gidB 16S rRNA methylt 99.3 4.2E-11 9.1E-16 101.8 15.4 118 199-354 44-170 (187)
67 PRK13255 thiopurine S-methyltr 99.3 4.9E-11 1.1E-15 104.0 15.2 132 199-353 36-190 (218)
68 PRK05134 bifunctional 3-demeth 99.3 2.1E-11 4.5E-16 108.1 13.2 149 198-353 46-205 (233)
69 PF05401 NodS: Nodulation prot 99.3 9.6E-12 2.1E-16 103.8 9.8 132 198-354 41-180 (201)
70 PF05175 MTS: Methyltransferas 99.3 4.9E-11 1.1E-15 100.4 11.9 99 199-300 30-140 (170)
71 TIGR01983 UbiG ubiquinone bios 99.3 4.1E-11 8.8E-16 105.6 11.9 142 200-354 45-204 (224)
72 KOG2361 Predicted methyltransf 99.3 2.1E-11 4.6E-16 103.9 9.4 145 202-351 73-235 (264)
73 TIGR02469 CbiT precorrin-6Y C5 99.3 7.6E-11 1.7E-15 93.5 11.5 100 190-299 11-121 (124)
74 PRK09489 rsmC 16S ribosomal RN 99.2 1E-10 2.3E-15 108.7 13.2 107 190-301 188-304 (342)
75 TIGR03534 RF_mod_PrmC protein- 99.2 2.1E-10 4.5E-15 102.9 14.5 123 200-354 87-242 (251)
76 PF07021 MetW: Methionine bios 99.2 1.4E-10 3E-15 96.8 11.7 140 198-356 11-170 (193)
77 PTZ00146 fibrillarin; Provisio 99.2 6.4E-10 1.4E-14 99.7 16.7 132 198-355 130-273 (293)
78 PRK00517 prmA ribosomal protei 99.2 6.1E-10 1.3E-14 99.7 15.7 124 199-364 118-249 (250)
79 PRK09328 N5-glutamine S-adenos 99.2 7.7E-10 1.7E-14 100.6 15.9 135 198-364 106-274 (275)
80 PRK00121 trmB tRNA (guanine-N( 99.2 1.1E-10 2.5E-15 100.9 9.2 98 200-300 40-156 (202)
81 PRK14968 putative methyltransf 99.2 2.3E-09 5E-14 91.6 16.8 134 199-365 22-188 (188)
82 PRK13256 thiopurine S-methyltr 99.2 1.1E-09 2.4E-14 95.3 14.7 101 199-304 42-167 (226)
83 COG2813 RsmC 16S RNA G1207 met 99.1 2.1E-09 4.6E-14 95.9 16.1 109 188-301 148-267 (300)
84 PRK13944 protein-L-isoaspartat 99.1 4.7E-10 1E-14 97.3 11.6 97 190-299 64-172 (205)
85 PLN02232 ubiquinone biosynthes 99.1 3.8E-10 8.2E-15 93.9 10.1 127 228-361 1-156 (160)
86 PF05724 TPMT: Thiopurine S-me 99.1 9.9E-10 2.2E-14 95.6 12.4 132 198-353 35-190 (218)
87 COG4123 Predicted O-methyltran 99.1 1.7E-09 3.7E-14 94.5 13.5 125 198-354 42-195 (248)
88 TIGR03533 L3_gln_methyl protei 99.1 2.4E-09 5.1E-14 97.5 14.6 97 199-298 120-249 (284)
89 PRK14966 unknown domain/N5-glu 99.1 4.6E-09 9.9E-14 98.7 16.8 134 199-364 250-417 (423)
90 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.9E-10 1.3E-14 95.8 10.1 97 200-300 16-132 (194)
91 PHA03411 putative methyltransf 99.1 2.1E-09 4.6E-14 95.3 13.4 123 200-347 64-208 (279)
92 TIGR00536 hemK_fam HemK family 99.1 4.6E-09 1E-13 95.8 16.2 96 202-301 116-244 (284)
93 PRK13942 protein-L-isoaspartat 99.1 1.4E-09 3.1E-14 94.8 11.8 100 188-300 66-176 (212)
94 PRK00377 cbiT cobalt-precorrin 99.1 4E-09 8.7E-14 91.0 14.0 97 192-298 34-143 (198)
95 PRK11088 rrmA 23S rRNA methylt 99.1 9.6E-10 2.1E-14 99.7 10.0 91 199-301 84-182 (272)
96 PRK11805 N5-glutamine S-adenos 99.0 4.5E-09 9.7E-14 96.6 14.5 94 202-298 135-261 (307)
97 PRK11188 rrmJ 23S rRNA methylt 99.0 3.6E-09 7.8E-14 91.9 13.1 104 190-301 42-166 (209)
98 TIGR00080 pimt protein-L-isoas 99.0 2.6E-09 5.6E-14 93.5 12.1 98 189-299 68-176 (215)
99 COG2242 CobL Precorrin-6B meth 99.0 3.6E-09 7.8E-14 87.8 11.8 100 191-301 27-136 (187)
100 KOG1271 Methyltransferases [Ge 99.0 1.4E-09 2.9E-14 88.8 8.6 126 199-356 66-208 (227)
101 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.7E-09 8E-14 98.7 11.8 106 190-301 114-236 (390)
102 PRK07402 precorrin-6B methylas 99.0 5.1E-09 1.1E-13 90.2 11.8 101 190-301 32-143 (196)
103 PRK01544 bifunctional N5-gluta 99.0 1.3E-08 2.9E-13 99.7 15.7 132 200-363 138-304 (506)
104 PRK04457 spermidine synthase; 99.0 2.5E-09 5.4E-14 96.2 9.7 97 199-299 65-176 (262)
105 TIGR00406 prmA ribosomal prote 99.0 9.9E-09 2.2E-13 93.7 13.8 119 199-355 158-285 (288)
106 PF13659 Methyltransf_26: Meth 99.0 3.1E-09 6.8E-14 83.4 9.1 96 201-300 1-115 (117)
107 PF12147 Methyltransf_20: Puta 99.0 1.1E-08 2.4E-13 90.2 13.2 155 199-365 134-311 (311)
108 PRK14967 putative methyltransf 99.0 2.4E-08 5.1E-13 87.9 15.0 102 198-303 34-162 (223)
109 cd02440 AdoMet_MTases S-adenos 99.0 6.8E-09 1.5E-13 78.7 10.2 92 203-299 1-103 (107)
110 KOG2899 Predicted methyltransf 98.9 7.1E-09 1.5E-13 88.5 9.7 110 188-301 46-209 (288)
111 COG2264 PrmA Ribosomal protein 98.9 2.6E-08 5.6E-13 89.5 13.3 127 198-361 160-296 (300)
112 TIGR03704 PrmC_rel_meth putati 98.9 4.2E-08 9.2E-13 87.7 14.6 122 201-354 87-241 (251)
113 PF05148 Methyltransf_8: Hypot 98.9 5.8E-08 1.3E-12 81.9 14.0 160 161-364 30-196 (219)
114 PF06325 PrmA: Ribosomal prote 98.9 3.3E-08 7.2E-13 89.6 13.5 125 199-363 160-293 (295)
115 COG2519 GCD14 tRNA(1-methylade 98.9 3.2E-08 6.9E-13 85.9 12.7 104 188-303 84-198 (256)
116 TIGR01177 conserved hypothetic 98.9 3.3E-08 7.3E-13 92.1 13.8 120 198-354 180-316 (329)
117 COG2890 HemK Methylase of poly 98.9 8.8E-08 1.9E-12 86.8 15.1 129 203-363 113-274 (280)
118 PRK00312 pcm protein-L-isoaspa 98.9 3.3E-08 7.2E-13 86.3 11.8 96 190-300 70-175 (212)
119 TIGR00438 rrmJ cell division p 98.9 2.1E-08 4.5E-13 85.8 10.3 95 198-299 30-145 (188)
120 COG4976 Predicted methyltransf 98.8 6.2E-09 1.3E-13 88.1 6.7 144 189-354 116-266 (287)
121 PF01739 CheR: CheR methyltran 98.8 2.8E-08 6E-13 85.0 10.0 97 200-299 31-174 (196)
122 PRK00811 spermidine synthase; 98.8 2.9E-08 6.4E-13 90.3 10.4 98 199-299 75-190 (283)
123 PF05219 DREV: DREV methyltran 98.8 6.5E-08 1.4E-12 84.4 11.8 146 200-356 94-243 (265)
124 PRK10611 chemotaxis methyltran 98.8 1.4E-07 3E-12 85.3 13.2 96 201-299 116-261 (287)
125 PF08100 Dimerisation: Dimeris 98.7 4E-09 8.6E-14 68.7 1.8 49 34-82 1-51 (51)
126 COG2518 Pcm Protein-L-isoaspar 98.7 1.2E-07 2.6E-12 80.6 11.2 98 189-301 63-170 (209)
127 PF01135 PCMT: Protein-L-isoas 98.7 5.4E-08 1.2E-12 84.1 9.3 100 188-300 62-172 (209)
128 PF08704 GCD14: tRNA methyltra 98.7 1.4E-07 2.9E-12 83.4 11.6 126 189-354 31-172 (247)
129 PRK13943 protein-L-isoaspartat 98.7 1.4E-07 3E-12 86.9 11.8 98 190-300 72-180 (322)
130 smart00650 rADc Ribosomal RNA 98.7 9.3E-08 2E-12 80.3 9.9 87 189-280 4-98 (169)
131 KOG3045 Predicted RNA methylas 98.7 4.1E-07 8.9E-12 78.6 13.5 157 162-364 139-302 (325)
132 PLN02366 spermidine synthase 98.7 1.5E-07 3.3E-12 86.1 11.5 98 199-299 90-205 (308)
133 PRK01581 speE spermidine synth 98.7 1.1E-07 2.3E-12 87.8 10.4 98 199-299 149-267 (374)
134 PF03291 Pox_MCEL: mRNA cappin 98.7 1.3E-07 2.9E-12 87.4 10.3 97 200-300 62-186 (331)
135 TIGR00417 speE spermidine synt 98.7 1.6E-07 3.4E-12 85.0 10.1 98 199-299 71-185 (270)
136 PF02390 Methyltransf_4: Putat 98.7 2.1E-07 4.6E-12 79.8 10.2 96 201-300 18-133 (195)
137 PRK03612 spermidine synthase; 98.6 3E-07 6.5E-12 90.7 12.5 97 199-299 296-414 (521)
138 PHA03412 putative methyltransf 98.6 4.2E-07 9E-12 79.0 11.7 94 201-298 50-160 (241)
139 COG1352 CheR Methylase of chem 98.6 8.6E-07 1.9E-11 79.1 13.9 97 200-299 96-240 (268)
140 PLN02781 Probable caffeoyl-CoA 98.6 3.6E-07 7.8E-12 80.8 10.9 96 198-301 66-179 (234)
141 KOG3010 Methyltransferase [Gen 98.6 1.2E-07 2.7E-12 81.2 7.4 95 199-300 32-137 (261)
142 PRK10901 16S rRNA methyltransf 98.6 5.4E-07 1.2E-11 87.0 12.5 108 191-303 237-375 (427)
143 PLN02672 methionine S-methyltr 98.6 6.6E-07 1.4E-11 93.6 13.5 65 201-265 119-210 (1082)
144 TIGR00563 rsmB ribosomal RNA s 98.5 5.4E-07 1.2E-11 87.0 11.1 110 191-305 231-373 (426)
145 PF04672 Methyltransf_19: S-ad 98.5 6.2E-07 1.3E-11 79.3 10.3 140 200-349 68-232 (267)
146 PRK14904 16S rRNA methyltransf 98.5 9.9E-07 2.1E-11 85.6 12.2 104 198-304 248-381 (445)
147 PRK14902 16S rRNA methyltransf 98.5 9.4E-07 2E-11 85.8 12.0 103 198-303 248-382 (444)
148 PRK04148 hypothetical protein; 98.5 2E-06 4.3E-11 68.2 10.7 97 190-301 8-110 (134)
149 PRK14901 16S rRNA methyltransf 98.5 1.2E-06 2.6E-11 84.7 11.4 103 198-303 250-387 (434)
150 PRK11727 23S rRNA mA1618 methy 98.5 1.8E-06 4E-11 79.2 11.6 144 200-354 114-293 (321)
151 KOG1975 mRNA cap methyltransfe 98.4 8.6E-07 1.9E-11 79.1 8.6 98 198-299 115-236 (389)
152 KOG1541 Predicted protein carb 98.4 6.2E-07 1.3E-11 75.8 7.2 93 200-298 50-158 (270)
153 PF10294 Methyltransf_16: Puta 98.4 1.3E-06 2.7E-11 73.6 9.0 101 198-303 43-159 (173)
154 PRK14896 ksgA 16S ribosomal RN 98.4 1.7E-06 3.8E-11 77.7 10.2 82 188-274 19-106 (258)
155 PF01596 Methyltransf_3: O-met 98.4 7.3E-07 1.6E-11 76.9 7.2 98 198-304 43-158 (205)
156 PRK13168 rumA 23S rRNA m(5)U19 98.4 1.6E-06 3.5E-11 84.1 10.3 91 198-299 295-399 (443)
157 TIGR00446 nop2p NOL1/NOP2/sun 98.4 3.5E-06 7.6E-11 76.0 11.8 104 198-304 69-203 (264)
158 TIGR00755 ksgA dimethyladenosi 98.4 1.6E-06 3.5E-11 77.7 9.5 83 188-274 19-109 (253)
159 PRK00274 ksgA 16S ribosomal RN 98.4 1.5E-06 3.2E-11 78.8 8.7 82 188-274 32-120 (272)
160 PRK14903 16S rRNA methyltransf 98.4 3.9E-06 8.5E-11 80.9 12.1 105 198-305 235-371 (431)
161 COG3963 Phospholipid N-methylt 98.4 5.1E-06 1.1E-10 67.3 10.7 111 187-302 37-158 (194)
162 COG4122 Predicted O-methyltran 98.3 3.7E-06 7.9E-11 72.6 9.9 100 198-306 57-171 (219)
163 PLN02476 O-methyltransferase 98.3 4.4E-06 9.6E-11 75.0 10.2 99 198-305 116-232 (278)
164 PF08123 DOT1: Histone methyla 98.3 3.6E-06 7.8E-11 72.5 9.0 109 189-305 33-163 (205)
165 PTZ00338 dimethyladenosine tra 98.3 4.1E-06 8.9E-11 76.4 9.4 88 188-280 26-122 (294)
166 KOG1500 Protein arginine N-met 98.3 8.8E-06 1.9E-10 73.0 11.0 94 200-297 177-279 (517)
167 PF09243 Rsm22: Mitochondrial 98.3 5.8E-06 1.3E-10 74.9 10.1 103 199-306 32-145 (274)
168 COG0220 Predicted S-adenosylme 98.3 7.9E-06 1.7E-10 71.4 10.1 95 202-300 50-164 (227)
169 PF11968 DUF3321: Putative met 98.2 1.1E-05 2.4E-10 68.7 10.3 121 201-356 52-184 (219)
170 PLN02823 spermine synthase 98.2 6.8E-06 1.5E-10 76.2 9.6 96 199-298 102-218 (336)
171 KOG1661 Protein-L-isoaspartate 98.2 6.6E-06 1.4E-10 69.2 8.5 99 190-299 72-192 (237)
172 PF05185 PRMT5: PRMT5 arginine 98.2 1.1E-05 2.3E-10 77.8 11.1 128 160-297 151-294 (448)
173 PRK10909 rsmD 16S rRNA m(2)G96 98.2 5.6E-06 1.2E-10 71.1 8.1 96 200-303 53-161 (199)
174 COG0421 SpeE Spermidine syntha 98.2 1.1E-05 2.5E-10 72.7 10.0 96 200-299 76-189 (282)
175 KOG1331 Predicted methyltransf 98.1 4.4E-06 9.6E-11 73.7 6.3 98 199-303 44-146 (293)
176 PLN02589 caffeoyl-CoA O-methyl 98.1 1.6E-05 3.4E-10 70.5 9.2 99 198-305 77-194 (247)
177 TIGR00478 tly hemolysin TlyA f 98.1 7.8E-05 1.7E-09 65.3 12.6 145 188-355 64-219 (228)
178 COG2263 Predicted RNA methylas 98.0 2.7E-05 5.8E-10 64.8 8.6 70 199-269 44-119 (198)
179 PF01564 Spermine_synth: Sperm 98.0 2E-05 4.4E-10 70.1 8.2 99 199-300 75-191 (246)
180 PRK11783 rlmL 23S rRNA m(2)G24 98.0 1.8E-05 3.8E-10 81.1 8.7 97 199-299 537-655 (702)
181 PRK00536 speE spermidine synth 98.0 4.6E-05 1E-09 68.0 10.3 88 199-299 71-170 (262)
182 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 1.3E-05 2.8E-10 71.0 6.6 146 190-353 46-239 (256)
183 PRK15128 23S rRNA m(5)C1962 me 98.0 4.5E-05 9.7E-10 72.6 10.5 98 199-300 219-339 (396)
184 KOG0820 Ribosomal RNA adenine 98.0 2.5E-05 5.4E-10 68.4 7.8 73 188-264 48-129 (315)
185 PRK03522 rumB 23S rRNA methylu 98.0 4.6E-05 9.9E-10 70.6 9.9 64 200-265 173-247 (315)
186 KOG3987 Uncharacterized conser 98.0 4.3E-06 9.3E-11 70.0 2.5 148 199-355 111-262 (288)
187 KOG1499 Protein arginine N-met 97.9 3.2E-05 7E-10 70.4 7.6 95 199-297 59-164 (346)
188 PF02527 GidB: rRNA small subu 97.9 3.6E-05 7.7E-10 65.2 7.4 89 203-300 51-148 (184)
189 PF04816 DUF633: Family of unk 97.9 0.00014 3E-09 62.7 11.0 125 204-365 1-139 (205)
190 PF03141 Methyltransf_29: Puta 97.9 9.5E-06 2.1E-10 77.2 3.8 99 199-304 116-223 (506)
191 COG0030 KsgA Dimethyladenosine 97.9 8.4E-05 1.8E-09 65.8 9.3 92 187-282 19-118 (259)
192 TIGR00095 RNA methyltransferas 97.9 9.8E-05 2.1E-09 63.0 9.2 96 200-303 49-161 (189)
193 PRK01544 bifunctional N5-gluta 97.8 8E-05 1.7E-09 73.3 9.3 98 199-300 346-462 (506)
194 PRK00050 16S rRNA m(4)C1402 me 97.8 5.7E-05 1.2E-09 68.6 7.1 77 187-265 8-97 (296)
195 TIGR03439 methyl_EasF probable 97.8 0.00015 3.3E-09 66.7 10.0 101 199-302 75-200 (319)
196 TIGR00479 rumA 23S rRNA (uraci 97.8 3.9E-05 8.5E-10 74.4 6.2 91 198-298 290-394 (431)
197 KOG3191 Predicted N6-DNA-methy 97.8 0.00097 2.1E-08 55.1 13.2 67 200-266 43-118 (209)
198 TIGR02085 meth_trns_rumB 23S r 97.7 0.00011 2.3E-09 69.8 8.2 89 200-298 233-332 (374)
199 KOG2940 Predicted methyltransf 97.7 9.3E-05 2E-09 63.2 6.6 141 199-351 71-225 (325)
200 KOG2904 Predicted methyltransf 97.7 0.00011 2.5E-09 64.4 7.1 66 200-265 148-229 (328)
201 COG0357 GidB Predicted S-adeno 97.6 0.00016 3.4E-09 62.4 6.8 120 201-355 68-197 (215)
202 COG2521 Predicted archaeal met 97.6 0.00055 1.2E-08 58.8 9.9 132 198-355 132-279 (287)
203 PF07942 N2227: N2227-like pro 97.6 0.0017 3.7E-08 58.1 13.5 135 199-353 55-242 (270)
204 COG0293 FtsJ 23S rRNA methylas 97.6 0.00046 9.9E-09 58.8 9.3 107 187-301 33-160 (205)
205 KOG3115 Methyltransferase-like 97.5 0.00018 4E-09 60.3 5.9 101 200-303 60-186 (249)
206 PRK11760 putative 23S rRNA C24 97.5 0.003 6.6E-08 58.0 13.8 99 198-307 209-311 (357)
207 KOG2915 tRNA(1-methyladenosine 97.5 0.0013 2.7E-08 57.9 10.2 105 188-303 95-213 (314)
208 PRK04338 N(2),N(2)-dimethylgua 97.5 0.00058 1.3E-08 64.8 9.0 90 201-299 58-157 (382)
209 COG5459 Predicted rRNA methyla 97.4 0.00015 3.2E-09 65.8 4.1 102 201-305 114-230 (484)
210 COG4798 Predicted methyltransf 97.4 0.0015 3.3E-08 54.5 9.6 140 198-354 46-206 (238)
211 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00066 1.4E-08 61.2 8.2 92 187-286 19-120 (262)
212 PF01728 FtsJ: FtsJ-like methy 97.4 0.00023 5E-09 60.4 4.9 106 188-300 10-139 (181)
213 PF13679 Methyltransf_32: Meth 97.3 0.00075 1.6E-08 54.7 6.8 84 198-285 23-122 (141)
214 KOG4589 Cell division protein 97.3 0.0018 3.8E-08 53.8 8.7 103 190-301 60-185 (232)
215 PF03059 NAS: Nicotianamine sy 97.3 0.002 4.3E-08 57.9 9.4 96 200-299 120-229 (276)
216 TIGR02143 trmA_only tRNA (urac 97.2 0.00042 9.1E-09 65.2 4.8 51 202-254 199-256 (353)
217 KOG1269 SAM-dependent methyltr 97.2 0.00045 9.8E-09 64.6 4.9 104 198-307 108-222 (364)
218 COG2384 Predicted SAM-dependen 97.2 0.015 3.3E-07 49.9 13.5 129 199-364 15-157 (226)
219 PF09339 HTH_IclR: IclR helix- 97.2 0.00016 3.5E-09 47.7 1.4 46 42-90 6-51 (52)
220 PF02475 Met_10: Met-10+ like- 97.2 0.00093 2E-08 57.3 6.4 90 198-296 99-198 (200)
221 COG4262 Predicted spermidine s 97.2 0.0026 5.6E-08 58.2 9.3 93 199-300 288-407 (508)
222 COG4076 Predicted RNA methylas 97.2 0.00084 1.8E-08 55.7 5.5 97 202-303 34-138 (252)
223 TIGR00027 mthyl_TIGR00027 meth 97.1 0.0068 1.5E-07 54.4 11.6 146 199-351 80-248 (260)
224 KOG2798 Putative trehalase [Ca 97.1 0.0057 1.2E-07 55.0 10.7 138 200-354 150-338 (369)
225 COG0500 SmtA SAM-dependent met 97.1 0.0057 1.2E-07 49.6 10.2 95 204-305 52-160 (257)
226 PF09445 Methyltransf_15: RNA 97.1 0.00054 1.2E-08 56.5 3.8 62 202-265 1-76 (163)
227 PF07091 FmrO: Ribosomal RNA m 97.1 0.0017 3.8E-08 56.9 7.0 101 198-303 103-211 (251)
228 COG4301 Uncharacterized conser 97.1 0.0044 9.5E-08 53.8 9.3 101 199-302 77-196 (321)
229 PRK05031 tRNA (uracil-5-)-meth 97.1 0.00059 1.3E-08 64.4 4.5 51 202-254 208-265 (362)
230 KOG3201 Uncharacterized conser 97.1 0.00049 1.1E-08 55.6 3.3 98 200-302 29-142 (201)
231 COG1889 NOP1 Fibrillarin-like 97.0 0.041 9E-07 46.5 14.3 140 198-364 74-228 (231)
232 PRK11933 yebU rRNA (cytosine-C 97.0 0.009 1.9E-07 58.1 11.9 103 198-303 111-245 (470)
233 TIGR01444 fkbM_fam methyltrans 96.9 0.003 6.5E-08 51.1 6.7 52 203-254 1-59 (143)
234 KOG3420 Predicted RNA methylas 96.9 0.0011 2.3E-08 52.7 3.8 69 199-268 47-124 (185)
235 COG3897 Predicted methyltransf 96.9 0.0048 1E-07 51.8 7.8 102 198-305 77-184 (218)
236 PF01170 UPF0020: Putative RNA 96.8 0.0096 2.1E-07 50.3 8.9 92 198-289 26-143 (179)
237 PF01269 Fibrillarin: Fibrilla 96.8 0.046 9.9E-07 47.2 12.8 133 198-356 71-215 (229)
238 PF02384 N6_Mtase: N-6 DNA Met 96.7 0.011 2.4E-07 54.6 9.3 101 198-301 44-184 (311)
239 PF11312 DUF3115: Protein of u 96.6 0.004 8.8E-08 56.3 5.9 99 200-301 86-243 (315)
240 smart00346 HTH_ICLR helix_turn 96.6 0.0018 3.9E-08 48.0 3.1 58 42-107 8-65 (91)
241 TIGR00006 S-adenosyl-methyltra 96.6 0.0098 2.1E-07 54.3 8.4 76 188-265 10-99 (305)
242 PF03602 Cons_hypoth95: Conser 96.6 0.011 2.4E-07 50.2 8.0 98 200-304 42-156 (183)
243 PF12840 HTH_20: Helix-turn-he 96.5 0.0014 3E-08 44.8 1.6 55 33-91 4-58 (61)
244 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.029 6.3E-07 57.8 11.9 111 187-301 178-348 (702)
245 TIGR02987 met_A_Alw26 type II 96.5 0.014 3.1E-07 58.0 9.3 66 200-265 31-119 (524)
246 KOG1663 O-methyltransferase [S 96.5 0.037 8E-07 47.8 10.3 97 198-303 71-185 (237)
247 PF02082 Rrf2: Transcriptional 96.4 0.01 2.2E-07 43.3 5.7 49 53-108 24-72 (83)
248 smart00550 Zalpha Z-DNA-bindin 96.4 0.0045 9.7E-08 43.3 3.6 59 40-105 7-66 (68)
249 PF13578 Methyltransf_24: Meth 96.2 0.0046 9.9E-08 47.3 3.4 88 205-298 1-103 (106)
250 PF01022 HTH_5: Bacterial regu 96.2 0.0026 5.6E-08 40.9 1.4 44 41-89 4-47 (47)
251 PRK10857 DNA-binding transcrip 96.1 0.014 3E-07 48.5 5.9 65 33-108 8-72 (164)
252 KOG1709 Guanidinoacetate methy 96.1 0.045 9.8E-07 46.7 8.8 101 198-303 99-209 (271)
253 KOG2918 Carboxymethyl transfer 96.1 0.058 1.3E-06 48.7 9.7 146 198-354 85-278 (335)
254 PF13463 HTH_27: Winged helix 96.0 0.0082 1.8E-07 41.7 3.6 53 52-107 16-68 (68)
255 TIGR02431 pcaR_pcaU beta-ketoa 96.0 0.0055 1.2E-07 54.8 3.4 57 42-108 12-68 (248)
256 cd00092 HTH_CRP helix_turn_hel 96.0 0.036 7.9E-07 38.2 6.9 44 53-105 24-67 (67)
257 COG1414 IclR Transcriptional r 96.0 0.0052 1.1E-07 54.8 3.1 58 42-107 7-64 (246)
258 TIGR00308 TRM1 tRNA(guanine-26 96.0 0.046 9.9E-07 51.7 9.3 90 202-300 46-147 (374)
259 PRK11569 transcriptional repre 95.9 0.0064 1.4E-07 55.2 3.3 58 43-108 32-89 (274)
260 COG1092 Predicted SAM-dependen 95.9 0.04 8.6E-07 52.2 8.6 96 201-301 218-337 (393)
261 PRK10163 DNA-binding transcrip 95.9 0.0072 1.6E-07 54.7 3.4 58 42-107 28-85 (271)
262 PRK10141 DNA-binding transcrip 95.9 0.0078 1.7E-07 46.8 3.1 68 31-105 8-75 (117)
263 COG2265 TrmA SAM-dependent met 95.8 0.023 5E-07 54.7 6.5 91 198-299 291-395 (432)
264 COG3315 O-Methyltransferase in 95.7 0.058 1.3E-06 49.4 8.7 149 199-351 91-262 (297)
265 PF03141 Methyltransf_29: Puta 95.7 0.043 9.4E-07 52.8 7.8 97 199-301 364-468 (506)
266 PF04989 CmcI: Cephalosporin h 95.6 0.052 1.1E-06 46.5 7.4 99 200-304 32-151 (206)
267 PF07757 AdoMet_MTase: Predict 95.6 0.0096 2.1E-07 44.9 2.6 32 199-232 57-88 (112)
268 COG1189 Predicted rRNA methyla 95.6 0.088 1.9E-06 45.8 8.7 148 189-354 69-225 (245)
269 PF01978 TrmB: Sugar-specific 95.6 0.0035 7.5E-08 43.8 0.1 47 41-91 10-56 (68)
270 smart00419 HTH_CRP helix_turn_ 95.5 0.027 6E-07 35.9 4.3 42 53-104 7-48 (48)
271 PRK15090 DNA-binding transcrip 95.5 0.012 2.7E-07 52.8 3.4 57 43-108 18-74 (257)
272 PRK09834 DNA-binding transcrip 95.5 0.011 2.4E-07 53.2 3.1 59 42-108 14-72 (263)
273 PLN02668 indole-3-acetate carb 95.4 0.41 8.8E-06 45.3 13.3 73 200-272 63-176 (386)
274 TIGR02010 IscR iron-sulfur clu 95.4 0.039 8.4E-07 44.3 5.6 64 34-108 9-72 (135)
275 COG2520 Predicted methyltransf 95.4 0.18 4E-06 46.7 10.6 98 199-306 187-295 (341)
276 PF01795 Methyltransf_5: MraW 95.3 0.051 1.1E-06 49.7 6.6 66 187-254 9-80 (310)
277 PF08461 HTH_12: Ribonuclease 95.1 0.016 3.4E-07 40.2 2.2 59 44-108 3-63 (66)
278 COG1041 Predicted DNA modifica 95.1 0.21 4.5E-06 46.2 9.9 99 198-301 195-311 (347)
279 PF10672 Methyltrans_SAM: S-ad 95.0 0.13 2.8E-06 46.8 8.3 99 199-301 122-239 (286)
280 PF14947 HTH_45: Winged helix- 95.0 0.02 4.4E-07 41.0 2.5 49 53-111 18-66 (77)
281 PF13412 HTH_24: Winged helix- 95.0 0.016 3.5E-07 37.2 1.9 44 41-88 5-48 (48)
282 PF13601 HTH_34: Winged helix 94.9 0.0084 1.8E-07 43.3 0.4 64 41-108 2-66 (80)
283 PF04072 LCM: Leucine carboxyl 94.9 0.13 2.8E-06 43.6 7.8 84 200-283 78-182 (183)
284 KOG2793 Putative N2,N2-dimethy 94.9 0.25 5.3E-06 43.7 9.5 98 200-303 86-202 (248)
285 PHA00738 putative HTH transcri 94.7 0.028 6.1E-07 42.4 2.8 62 40-108 13-74 (108)
286 COG0742 N6-adenine-specific me 94.7 0.25 5.4E-06 41.7 8.7 100 200-304 43-157 (187)
287 KOG3924 Putative protein methy 94.6 0.13 2.8E-06 48.0 7.4 102 198-305 190-313 (419)
288 TIGR00738 rrf2_super rrf2 fami 94.6 0.079 1.7E-06 42.2 5.5 64 34-108 9-72 (132)
289 TIGR02337 HpaR homoprotocatech 94.6 0.08 1.7E-06 41.3 5.3 68 41-112 30-97 (118)
290 COG3355 Predicted transcriptio 94.4 0.042 9.1E-07 43.0 3.2 49 41-92 29-77 (126)
291 PRK11920 rirA iron-responsive 94.3 0.099 2.1E-06 42.9 5.4 64 33-108 8-71 (153)
292 KOG2352 Predicted spermine/spe 94.3 0.31 6.6E-06 46.9 9.2 96 203-302 51-163 (482)
293 KOG2730 Methylase [General fun 94.2 0.036 7.8E-07 47.5 2.6 53 200-254 94-154 (263)
294 COG1959 Predicted transcriptio 93.9 0.088 1.9E-06 43.0 4.4 49 53-108 24-72 (150)
295 smart00347 HTH_MARR helix_turn 93.9 0.066 1.4E-06 40.0 3.4 67 41-111 12-78 (101)
296 PRK10742 putative methyltransf 93.9 0.18 3.9E-06 44.6 6.5 73 188-264 76-170 (250)
297 PRK03902 manganese transport t 93.8 0.077 1.7E-06 43.0 3.9 50 52-110 20-69 (142)
298 COG0275 Predicted S-adenosylme 93.8 0.33 7.1E-06 43.9 8.0 65 188-254 13-84 (314)
299 PF06859 Bin3: Bicoid-interact 93.8 0.059 1.3E-06 41.0 2.9 87 258-354 1-93 (110)
300 COG0116 Predicted N6-adenine-s 93.7 0.76 1.6E-05 43.2 10.6 77 188-266 181-307 (381)
301 PF09012 FeoC: FeoC like trans 93.6 0.036 7.7E-07 38.8 1.3 43 45-91 6-48 (69)
302 PF04703 FaeA: FaeA-like prote 93.6 0.034 7.3E-07 37.9 1.1 44 45-91 6-49 (62)
303 PF03492 Methyltransf_7: SAM d 93.6 1.2 2.6E-05 41.6 11.8 149 198-349 14-249 (334)
304 PRK11014 transcriptional repre 93.6 0.19 4.2E-06 40.6 5.8 62 34-106 9-70 (141)
305 PF03514 GRAS: GRAS domain fam 93.4 0.73 1.6E-05 43.8 10.2 111 188-305 100-248 (374)
306 KOG0822 Protein kinase inhibit 93.1 0.91 2E-05 44.2 10.0 127 160-297 333-475 (649)
307 PF05958 tRNA_U5-meth_tr: tRNA 93.0 0.11 2.3E-06 49.1 3.9 48 203-252 199-253 (352)
308 PRK11050 manganese transport r 93.0 0.43 9.3E-06 39.1 7.1 58 44-111 42-99 (152)
309 PF01861 DUF43: Protein of unk 93.0 3 6.5E-05 36.7 12.4 87 199-289 43-140 (243)
310 TIGR00122 birA_repr_reg BirA b 93.0 0.11 2.5E-06 36.1 3.1 55 42-107 3-57 (69)
311 TIGR02944 suf_reg_Xantho FeS a 92.9 0.14 2.9E-06 40.8 3.9 46 53-105 24-69 (130)
312 PF04967 HTH_10: HTH DNA bindi 92.9 0.28 6E-06 32.2 4.5 42 32-80 5-46 (53)
313 cd07377 WHTH_GntR Winged helix 92.8 0.42 9.1E-06 32.4 5.8 34 55-91 26-59 (66)
314 COG4627 Uncharacterized protei 92.7 0.034 7.4E-07 44.9 0.2 41 258-301 47-87 (185)
315 COG1321 TroR Mn-dependent tran 92.7 0.19 4.2E-06 41.1 4.6 51 52-111 22-72 (154)
316 PRK11512 DNA-binding transcrip 92.7 0.12 2.7E-06 41.8 3.5 65 43-111 44-108 (144)
317 COG4742 Predicted transcriptio 92.7 0.13 2.8E-06 45.7 3.7 65 35-111 9-73 (260)
318 PRK03573 transcriptional regul 92.6 0.15 3.2E-06 41.3 3.7 65 44-111 36-100 (144)
319 KOG4058 Uncharacterized conser 92.5 0.47 1E-05 38.1 6.2 99 198-305 70-177 (199)
320 PF08220 HTH_DeoR: DeoR-like h 92.3 0.15 3.3E-06 34.1 2.9 44 44-91 5-48 (57)
321 TIGR01889 Staph_reg_Sar staphy 92.0 0.19 4.1E-06 38.6 3.5 56 53-111 42-97 (109)
322 PF12802 MarR_2: MarR family; 91.9 0.076 1.6E-06 36.0 1.0 34 55-91 22-55 (62)
323 PF05971 Methyltransf_10: Prot 91.7 0.67 1.4E-05 42.3 7.2 72 200-271 102-190 (299)
324 TIGR02702 SufR_cyano iron-sulf 91.7 0.17 3.7E-06 43.6 3.3 65 43-111 5-71 (203)
325 PRK06474 hypothetical protein; 91.7 0.21 4.4E-06 42.2 3.7 73 33-108 5-80 (178)
326 PRK01747 mnmC bifunctional tRN 91.7 0.65 1.4E-05 47.8 8.0 98 199-299 56-205 (662)
327 PF07109 Mg-por_mtran_C: Magne 91.6 0.52 1.1E-05 35.1 5.3 84 265-365 2-97 (97)
328 PF01638 HxlR: HxlR-like helix 91.6 0.16 3.5E-06 37.5 2.6 56 53-111 17-73 (90)
329 PF08279 HTH_11: HTH domain; 91.6 0.19 4E-06 33.2 2.7 43 44-89 5-47 (55)
330 smart00418 HTH_ARSR helix_turn 91.5 0.32 7E-06 32.7 3.9 47 53-105 9-55 (66)
331 smart00345 HTH_GNTR helix_turn 91.5 0.46 9.9E-06 31.5 4.6 36 53-91 18-54 (60)
332 PF01047 MarR: MarR family; I 91.4 0.066 1.4E-06 35.9 0.4 36 53-91 16-51 (59)
333 TIGR01884 cas_HTH CRISPR locus 91.4 0.2 4.3E-06 43.2 3.4 58 42-107 146-203 (203)
334 cd00315 Cyt_C5_DNA_methylase C 91.4 1.1 2.3E-05 40.8 8.2 125 203-351 2-141 (275)
335 smart00529 HTH_DTXR Helix-turn 91.3 0.33 7.3E-06 36.1 4.1 46 57-111 2-47 (96)
336 COG1064 AdhP Zn-dependent alco 91.3 3.2 7E-05 38.6 11.2 93 198-303 164-262 (339)
337 COG4189 Predicted transcriptio 91.2 0.22 4.8E-06 42.9 3.4 56 31-90 15-70 (308)
338 COG0144 Sun tRNA and rRNA cyto 91.2 3.6 7.8E-05 38.8 11.9 105 198-305 154-293 (355)
339 COG2345 Predicted transcriptio 91.1 0.2 4.3E-06 43.3 3.0 64 44-111 16-81 (218)
340 smart00420 HTH_DEOR helix_turn 90.8 0.27 5.8E-06 31.7 2.8 36 53-91 13-48 (53)
341 PF00325 Crp: Bacterial regula 90.2 0.41 8.8E-06 27.8 2.8 31 54-87 2-32 (32)
342 PF01726 LexA_DNA_bind: LexA D 90.2 0.47 1E-05 32.7 3.7 38 52-91 23-60 (65)
343 PRK10870 transcriptional repre 90.1 0.6 1.3E-05 39.3 5.0 65 44-111 60-125 (176)
344 PRK06266 transcription initiat 89.9 0.51 1.1E-05 39.7 4.4 46 42-91 25-70 (178)
345 cd07153 Fur_like Ferric uptake 89.6 0.29 6.3E-06 37.9 2.6 50 42-91 4-55 (116)
346 PF01189 Nol1_Nop2_Fmu: NOL1/N 89.6 2 4.4E-05 39.1 8.5 103 198-303 83-222 (283)
347 cd00090 HTH_ARSR Arsenical Res 89.6 0.4 8.7E-06 33.3 3.2 54 44-105 12-65 (78)
348 KOG1562 Spermidine synthase [A 89.5 1.1 2.3E-05 40.5 6.2 97 198-300 119-236 (337)
349 COG3432 Predicted transcriptio 89.4 0.15 3.3E-06 37.7 0.8 54 52-111 29-82 (95)
350 COG4190 Predicted transcriptio 89.3 0.37 8.1E-06 37.6 2.8 48 40-91 65-112 (144)
351 PF14394 DUF4423: Domain of un 89.2 1.4 3E-05 36.8 6.6 64 29-109 22-87 (171)
352 KOG2187 tRNA uracil-5-methyltr 89.0 0.35 7.6E-06 46.8 3.1 55 198-254 381-442 (534)
353 PF01325 Fe_dep_repress: Iron 88.7 0.68 1.5E-05 31.3 3.5 37 52-91 20-56 (60)
354 cd08283 FDH_like_1 Glutathione 88.6 5.3 0.00011 38.0 11.0 99 198-301 182-307 (386)
355 PF10007 DUF2250: Uncharacteri 88.4 0.43 9.4E-06 35.3 2.6 47 41-91 9-55 (92)
356 PF04445 SAM_MT: Putative SAM- 88.2 1.1 2.3E-05 39.4 5.3 76 189-268 64-161 (234)
357 PRK14165 winged helix-turn-hel 88.1 0.91 2E-05 39.4 4.8 58 47-111 15-72 (217)
358 PF06163 DUF977: Bacterial pro 88.1 0.52 1.1E-05 36.6 3.0 51 37-91 10-60 (127)
359 smart00344 HTH_ASNC helix_turn 88.0 0.38 8.3E-06 36.7 2.3 47 40-90 4-50 (108)
360 KOG1099 SAM-dependent methyltr 88.0 1.9 4E-05 37.5 6.5 94 197-297 38-160 (294)
361 TIGR00373 conserved hypothetic 88.0 0.48 1E-05 39.1 2.9 46 42-91 17-62 (158)
362 PF07789 DUF1627: Protein of u 87.8 0.91 2E-05 36.3 4.2 37 52-91 4-40 (155)
363 COG1255 Uncharacterized protei 87.8 8.2 0.00018 29.7 9.1 80 199-288 12-95 (129)
364 TIGR01610 phage_O_Nterm phage 87.8 1.1 2.3E-05 33.5 4.5 44 53-104 46-89 (95)
365 PF11899 DUF3419: Protein of u 87.3 1.3 2.7E-05 42.1 5.7 61 242-305 274-339 (380)
366 PF03686 UPF0146: Uncharacteri 87.1 2.8 6.1E-05 32.9 6.5 87 199-301 12-103 (127)
367 PF13545 HTH_Crp_2: Crp-like h 86.6 1.2 2.5E-05 31.4 4.0 43 53-105 27-69 (76)
368 PRK15431 ferrous iron transpor 86.1 0.89 1.9E-05 32.3 3.0 42 46-91 9-50 (78)
369 PF03444 HrcA_DNA-bdg: Winged 86.1 1.3 2.8E-05 31.5 3.8 49 52-108 21-70 (78)
370 COG1568 Predicted methyltransf 85.9 4.4 9.5E-05 36.3 7.8 179 55-264 35-227 (354)
371 COG1497 Predicted transcriptio 85.8 0.43 9.4E-06 41.4 1.6 49 53-110 24-72 (260)
372 COG4565 CitB Response regulato 85.4 0.76 1.6E-05 39.4 2.8 35 53-90 172-206 (224)
373 COG1565 Uncharacterized conser 85.3 2.3 5E-05 39.6 6.1 64 168-237 51-123 (370)
374 PF02636 Methyltransf_28: Puta 85.0 2.2 4.7E-05 38.1 5.8 37 201-237 19-64 (252)
375 PRK04214 rbn ribonuclease BN/u 84.9 1.3 2.8E-05 42.7 4.6 45 52-105 308-352 (412)
376 KOG1501 Arginine N-methyltrans 84.6 1.4 3E-05 41.9 4.3 88 199-287 65-164 (636)
377 PF10354 DUF2431: Domain of un 84.5 16 0.00035 30.3 10.4 120 206-354 2-153 (166)
378 PF02153 PDH: Prephenate dehyd 84.2 2.2 4.7E-05 38.3 5.5 70 214-289 1-71 (258)
379 PF12692 Methyltransf_17: S-ad 84.2 3.6 7.8E-05 33.2 5.9 54 201-254 29-82 (160)
380 PF02319 E2F_TDP: E2F/DP famil 84.2 0.65 1.4E-05 32.6 1.6 44 45-91 17-63 (71)
381 PHA02943 hypothetical protein; 83.9 1.3 2.7E-05 35.7 3.3 44 43-91 15-58 (165)
382 PRK13777 transcriptional regul 83.8 1.3 2.9E-05 37.5 3.6 65 43-111 49-113 (185)
383 PF07381 DUF1495: Winged helix 83.7 1.3 2.7E-05 32.7 3.0 67 38-110 8-86 (90)
384 COG1846 MarR Transcriptional r 83.4 1.2 2.7E-05 34.3 3.2 67 41-111 24-90 (126)
385 COG1378 Predicted transcriptio 82.9 2.3 4.9E-05 37.9 4.9 59 43-109 20-78 (247)
386 PF05206 TRM13: Methyltransfer 82.6 2.1 4.6E-05 38.3 4.6 36 198-233 16-56 (259)
387 PF05430 Methyltransf_30: S-ad 82.5 9.8 0.00021 29.9 7.8 53 277-364 70-122 (124)
388 TIGR00675 dcm DNA-methyltransf 82.4 4.8 0.0001 37.3 7.1 122 204-350 1-137 (315)
389 PLN02853 Probable phenylalanyl 82.3 1.1 2.4E-05 43.6 2.9 69 39-115 3-73 (492)
390 PRK04172 pheS phenylalanyl-tRN 82.3 1.1 2.4E-05 44.2 3.0 63 42-112 9-71 (489)
391 PF00392 GntR: Bacterial regul 82.2 2.6 5.5E-05 28.7 4.0 50 35-91 8-58 (64)
392 KOG1596 Fibrillarin and relate 82.2 7.7 0.00017 34.1 7.6 96 198-301 154-262 (317)
393 PF04182 B-block_TFIIIC: B-blo 82.0 0.89 1.9E-05 32.2 1.7 48 41-91 4-52 (75)
394 COG2512 Predicted membrane-ass 81.6 0.83 1.8E-05 40.8 1.6 48 42-92 198-245 (258)
395 COG5631 Predicted transcriptio 81.5 3.7 8.1E-05 33.3 5.1 78 26-108 63-147 (199)
396 PF02254 TrkA_N: TrkA-N domain 81.2 16 0.00034 27.8 8.7 81 209-298 4-94 (116)
397 PRK09424 pntA NAD(P) transhydr 81.1 15 0.00032 36.5 10.2 95 199-301 163-286 (509)
398 KOG2539 Mitochondrial/chloropl 80.8 5.5 0.00012 38.4 6.8 100 201-303 201-318 (491)
399 PRK11169 leucine-responsive tr 80.6 1.6 3.5E-05 36.2 2.9 47 39-89 14-60 (164)
400 PF12793 SgrR_N: Sugar transpo 80.3 2.1 4.7E-05 33.1 3.4 36 53-91 18-53 (115)
401 PRK07502 cyclohexadienyl dehyd 80.2 10 0.00022 34.8 8.5 84 201-289 6-92 (307)
402 PF13730 HTH_36: Helix-turn-he 80.0 2.3 5E-05 27.8 3.1 29 56-87 27-55 (55)
403 COG3413 Predicted DNA binding 79.5 3.4 7.4E-05 35.9 4.8 42 31-79 159-200 (215)
404 PTZ00326 phenylalanyl-tRNA syn 78.9 1.8 4E-05 42.2 3.1 69 40-115 7-76 (494)
405 PRK11179 DNA-binding transcrip 78.6 1.7 3.6E-05 35.6 2.4 47 40-90 10-56 (153)
406 PF05732 RepL: Firmicute plasm 78.3 3.1 6.7E-05 34.5 3.9 72 21-107 47-119 (165)
407 PF03721 UDPG_MGDP_dh_N: UDP-g 78.3 5.3 0.00011 33.8 5.5 99 203-306 2-125 (185)
408 KOG2920 Predicted methyltransf 78.2 1.9 4.2E-05 38.7 2.8 37 199-236 115-152 (282)
409 COG1522 Lrp Transcriptional re 77.8 1.8 3.9E-05 35.2 2.4 48 40-91 9-56 (154)
410 PRK05638 threonine synthase; V 77.7 2.4 5.2E-05 41.3 3.6 52 53-109 383-436 (442)
411 TIGR00498 lexA SOS regulatory 77.7 3.3 7.1E-05 35.5 4.1 37 53-91 24-60 (199)
412 TIGR02147 Fsuc_second hypothet 77.5 3.2 6.9E-05 37.5 4.1 47 54-107 137-183 (271)
413 COG0287 TyrA Prephenate dehydr 76.8 12 0.00025 34.0 7.5 82 202-289 4-90 (279)
414 PF01210 NAD_Gly3P_dh_N: NAD-d 76.4 6.1 0.00013 32.4 5.2 87 203-299 1-101 (157)
415 PF08784 RPA_C: Replication pr 75.7 1.6 3.5E-05 32.9 1.5 35 53-90 64-98 (102)
416 PF06962 rRNA_methylase: Putat 75.7 14 0.00029 29.8 6.7 106 226-354 1-126 (140)
417 PF02002 TFIIE_alpha: TFIIE al 75.6 1.2 2.5E-05 33.9 0.7 44 44-91 18-61 (105)
418 COG1063 Tdh Threonine dehydrog 75.3 17 0.00036 34.2 8.5 94 201-305 169-274 (350)
419 PF05711 TylF: Macrocin-O-meth 74.9 4.6 0.0001 35.9 4.3 95 200-298 74-210 (248)
420 PRK13509 transcriptional repre 74.2 2.9 6.3E-05 37.3 2.9 45 43-91 9-53 (251)
421 COG1510 Predicted transcriptio 74.1 3.7 8.1E-05 33.9 3.2 37 52-91 39-75 (177)
422 COG1733 Predicted transcriptio 73.8 4.2 9.1E-05 31.8 3.4 79 19-111 12-91 (120)
423 KOG1209 1-Acyl dihydroxyaceton 72.9 59 0.0013 28.3 10.1 77 199-299 5-85 (289)
424 PRK11886 bifunctional biotin-- 72.7 3.7 7.9E-05 38.1 3.3 57 42-107 7-63 (319)
425 KOG2651 rRNA adenine N-6-methy 72.6 6.6 0.00014 36.9 4.8 35 198-233 151-185 (476)
426 PRK09334 30S ribosomal protein 72.2 4.9 0.00011 29.2 3.1 36 53-91 40-75 (86)
427 PRK10906 DNA-binding transcrip 72.2 2.9 6.2E-05 37.4 2.4 46 42-91 8-53 (252)
428 PLN02353 probable UDP-glucose 72.1 32 0.00069 33.9 9.8 100 202-306 2-132 (473)
429 PF01475 FUR: Ferric uptake re 72.1 1.7 3.8E-05 33.8 0.9 65 39-105 8-74 (120)
430 PF12324 HTH_15: Helix-turn-he 72.1 2.7 5.9E-05 29.8 1.7 41 44-91 29-69 (77)
431 PF01358 PARP_regulatory: Poly 72.0 14 0.00031 33.3 6.6 51 200-250 58-112 (294)
432 PF10237 N6-adenineMlase: Prob 71.9 56 0.0012 27.0 10.8 94 199-301 24-124 (162)
433 PRK05562 precorrin-2 dehydroge 71.7 27 0.00059 30.5 8.2 64 199-265 23-92 (223)
434 PF06969 HemN_C: HemN C-termin 71.7 5.7 0.00012 27.0 3.3 47 53-108 19-65 (66)
435 PF00107 ADH_zinc_N: Zinc-bind 71.6 44 0.00096 25.7 9.2 82 210-303 1-92 (130)
436 KOG0024 Sorbitol dehydrogenase 70.3 91 0.002 29.0 11.4 97 198-305 167-278 (354)
437 PF05331 DUF742: Protein of un 70.1 4.7 0.0001 31.2 2.8 36 53-91 54-89 (114)
438 COG0686 Ald Alanine dehydrogen 69.9 17 0.00038 33.3 6.7 91 201-297 168-265 (371)
439 PRK11730 fadB multifunctional 69.8 25 0.00054 36.6 8.9 149 200-357 312-497 (715)
440 COG5379 BtaA S-adenosylmethion 69.6 8.1 0.00018 35.0 4.5 66 233-301 296-367 (414)
441 PRK09775 putative DNA-binding 69.5 4.6 9.9E-05 39.3 3.3 53 45-107 6-58 (442)
442 TIGR01470 cysG_Nterm siroheme 69.1 21 0.00045 30.8 7.0 64 200-265 8-76 (205)
443 PRK09391 fixK transcriptional 69.1 15 0.00032 32.1 6.3 44 53-105 178-221 (230)
444 COG2933 Predicted SAM-dependen 68.9 12 0.00025 33.4 5.3 84 198-289 209-295 (358)
445 COG3510 CmcI Cephalosporin hyd 68.8 51 0.0011 28.1 8.7 103 200-307 69-187 (237)
446 PRK06719 precorrin-2 dehydroge 68.6 48 0.001 27.1 8.8 79 199-285 11-92 (157)
447 PF13384 HTH_23: Homeodomain-l 68.4 3.8 8.2E-05 26.1 1.8 30 54-86 17-46 (50)
448 COG0541 Ffh Signal recognition 67.9 24 0.00052 33.9 7.5 105 199-306 98-227 (451)
449 PHA01634 hypothetical protein 67.5 10 0.00022 29.9 4.1 41 200-241 28-69 (156)
450 PRK11639 zinc uptake transcrip 67.5 5.2 0.00011 33.3 2.8 53 39-91 26-80 (169)
451 PRK11753 DNA-binding transcrip 67.2 8.5 0.00018 32.9 4.3 35 54-91 168-202 (211)
452 PF03297 Ribosomal_S25: S25 ri 66.9 7.5 0.00016 29.5 3.3 36 53-91 58-93 (105)
453 cd01842 SGNH_hydrolase_like_5 66.8 11 0.00024 31.6 4.5 43 258-304 50-102 (183)
454 PRK11161 fumarate/nitrate redu 66.7 8.2 0.00018 33.7 4.1 43 53-105 183-225 (235)
455 PRK09802 DNA-binding transcrip 66.0 5.2 0.00011 36.1 2.7 47 41-91 19-65 (269)
456 PRK10411 DNA-binding transcrip 66.0 6.8 0.00015 34.7 3.4 44 44-91 9-52 (240)
457 PF09821 AAA_assoc_C: C-termin 65.9 14 0.00029 28.9 4.7 76 59-145 2-77 (120)
458 TIGR03697 NtcA_cyano global ni 65.7 9 0.0002 32.1 4.1 36 53-91 142-177 (193)
459 PF13518 HTH_28: Helix-turn-he 65.5 9.8 0.00021 24.2 3.3 30 54-86 12-41 (52)
460 cd08237 ribitol-5-phosphate_DH 65.2 42 0.00092 31.2 8.9 94 198-301 161-257 (341)
461 PRK08507 prephenate dehydrogen 64.9 28 0.0006 31.4 7.3 79 203-289 2-83 (275)
462 TIGR02698 CopY_TcrY copper tra 64.7 7 0.00015 31.0 2.9 47 41-91 6-56 (130)
463 TIGR03879 near_KaiC_dom probab 64.1 4.9 0.00011 28.3 1.7 34 53-89 31-64 (73)
464 PRK07417 arogenate dehydrogena 63.8 46 0.001 30.1 8.6 79 203-289 2-83 (279)
465 KOG2352 Predicted spermine/spe 63.8 15 0.00032 35.8 5.3 104 199-307 294-422 (482)
466 cd08254 hydroxyacyl_CoA_DH 6-h 63.3 40 0.00086 30.9 8.3 91 198-301 163-264 (338)
467 PRK10434 srlR DNA-bindng trans 63.1 5 0.00011 35.9 2.1 46 42-91 8-53 (256)
468 PF11994 DUF3489: Protein of u 63.0 16 0.00035 25.6 4.0 55 44-103 15-71 (72)
469 COG0735 Fur Fe2+/Zn2+ uptake r 62.5 6.5 0.00014 31.9 2.4 65 40-106 22-88 (145)
470 PRK10046 dpiA two-component re 62.5 7.1 0.00015 33.9 2.9 44 44-90 167-210 (225)
471 PF05584 Sulfolobus_pRN: Sulfo 62.5 9 0.00019 26.8 2.7 42 44-90 10-51 (72)
472 PRK11534 DNA-binding transcrip 62.2 14 0.0003 32.1 4.7 37 52-91 28-64 (224)
473 TIGR02787 codY_Gpos GTP-sensin 62.1 34 0.00073 30.2 6.8 64 23-91 169-232 (251)
474 PF07279 DUF1442: Protein of u 62.1 93 0.002 27.0 9.4 96 199-304 40-152 (218)
475 TIGR01202 bchC 2-desacetyl-2-h 61.8 1E+02 0.0022 28.1 10.7 86 200-301 144-232 (308)
476 PF11599 AviRa: RRNA methyltra 61.8 49 0.0011 28.8 7.5 97 199-298 50-212 (246)
477 PRK12423 LexA repressor; Provi 61.7 8.5 0.00018 33.1 3.2 36 54-91 25-60 (202)
478 PF01555 N6_N4_Mtase: DNA meth 61.7 15 0.00033 31.5 4.9 40 199-240 190-230 (231)
479 COG1349 GlpR Transcriptional r 61.3 7.1 0.00015 34.9 2.7 45 43-91 9-53 (253)
480 PRK11154 fadJ multifunctional 61.3 48 0.001 34.5 9.1 92 200-300 308-424 (708)
481 PF13404 HTH_AsnC-type: AsnC-t 61.2 4.9 0.00011 24.9 1.2 27 40-67 4-30 (42)
482 PRK00215 LexA repressor; Valid 61.2 12 0.00027 32.0 4.1 37 53-91 22-58 (205)
483 PF14740 DUF4471: Domain of un 61.1 7.2 0.00016 35.5 2.7 81 242-351 199-287 (289)
484 PF08221 HTH_9: RNA polymerase 61.0 5.5 0.00012 27.0 1.5 55 23-90 6-60 (62)
485 KOG1269 SAM-dependent methyltr 60.7 1E+02 0.0022 29.3 10.3 106 199-309 179-322 (364)
486 PRK13918 CRP/FNR family transc 60.4 13 0.00027 31.6 4.1 35 53-90 148-182 (202)
487 PRK09462 fur ferric uptake reg 60.3 7.7 0.00017 31.4 2.5 53 39-91 17-72 (148)
488 PRK13699 putative methylase; P 60.1 40 0.00086 29.5 7.2 76 245-352 2-95 (227)
489 TIGR02437 FadB fatty oxidation 60.1 44 0.00095 34.8 8.5 149 200-357 312-497 (714)
490 PTZ00357 methyltransferase; Pr 59.7 44 0.00095 34.3 7.9 128 160-288 640-822 (1072)
491 PF07848 PaaX: PaaX-like prote 59.5 15 0.00033 25.6 3.5 49 52-106 18-69 (70)
492 KOG1098 Putative SAM-dependent 59.1 11 0.00025 37.6 3.8 110 189-307 34-164 (780)
493 TIGR03338 phnR_burk phosphonat 59.1 15 0.00032 31.6 4.2 50 35-91 19-68 (212)
494 PRK03659 glutathione-regulated 58.7 56 0.0012 33.3 8.9 87 202-299 401-497 (601)
495 PF09929 DUF2161: Uncharacteri 58.5 22 0.00048 27.5 4.5 49 47-108 67-115 (118)
496 PF03374 ANT: Phage antirepres 58.4 13 0.00028 28.4 3.3 45 41-91 11-55 (111)
497 PRK11642 exoribonuclease R; Pr 58.3 10 0.00023 39.9 3.6 48 44-91 24-72 (813)
498 COG1802 GntR Transcriptional r 58.3 16 0.00036 31.8 4.5 61 35-108 24-84 (230)
499 TIGR00561 pntA NAD(P) transhyd 58.2 39 0.00084 33.6 7.3 91 200-297 163-281 (511)
500 TIGR01321 TrpR trp operon repr 58.1 6.5 0.00014 29.2 1.5 41 37-82 40-80 (94)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=303.28 Aligned_cols=333 Identities=31% Similarity=0.485 Sum_probs=287.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcC--CCCCCcchHHHHHHHHHhcCceeccccCC
Q 017835 17 LQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ--IHPTKTQCVYHLMRILVHSGFFALQKTSE 94 (365)
Q Consensus 17 ~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~--~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 94 (365)
.++..+++++++++...++|++|+||||||+|.++ ++ ..|||..+. ..|.++.+++|+||.|+++++++..-..
T Consensus 4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~- 79 (342)
T KOG3178|consen 4 NEASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG- 79 (342)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-
Confidence 45667899999999999999999999999999974 33 788888777 3444788999999999999999986421
Q ss_pred CCccceEecCccchhhhcCC-CCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHH
Q 017835 95 NEQEEGYILTSASKLLLKDH-PLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNH 173 (365)
Q Consensus 95 ~~~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 173 (365)
+ + .|.+++.++++.++. ..+++.++.........+.|..+.++++.+. .+|..++|...++|...+.....
T Consensus 80 -~-~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-----~~~~~~~G~~l~~~~~~~~~~~~ 151 (342)
T KOG3178|consen 80 -G-E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-----DAFATAHGMMLGGYGGADERFSK 151 (342)
T ss_pred -c-e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-----cCCccccchhhhhhcccccccHH
Confidence 1 2 799999999766433 3589999988878889999999999999987 68888999888999988888888
Q ss_pred HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccC-CCeEEEeCCC
Q 017835 174 FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-GNLKYVGGNM 252 (365)
Q Consensus 174 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~ 252 (365)
.++++|...+......+++.+. +++.....||+|+|.|..+..++..||+++++.+|+|.+++.+... ..|+.+.+|+
T Consensus 152 ~~~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm 230 (342)
T KOG3178|consen 152 DFNGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM 230 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc
Confidence 8999998887777666777666 4778899999999999999999999999999999999999998875 7799999999
Q ss_pred CCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC-CccCccchhhhhhhhhhhhhcc-Ccc
Q 017835 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES-EKADYKTTETQLFMDMLMMVLV-KGE 330 (365)
Q Consensus 253 ~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~-~~~ 330 (365)
+++.|..|+|++.++||||+|++|+++|++|++.|+| +|+|++.|.+.++ ...+...+.....+|++|+... +|+
T Consensus 231 fq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gk 307 (342)
T KOG3178|consen 231 FQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGK 307 (342)
T ss_pred cccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccce
Confidence 9999999999999999999999999999999999999 9999999998886 3222111233457788888775 599
Q ss_pred ccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 331 ERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 331 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+|+.+|+..++.++||.+..+...+..+++|+++|
T Consensus 308 ert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 308 ERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred eccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999999999986
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=3.5e-38 Score=290.77 Aligned_cols=290 Identities=18% Similarity=0.334 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 31 VNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 31 ~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
..+.+|++|+++||||.|.+ +|.|++|||+++|+ +++.+++|||+|+++|+|++. +++|++|+.+..+
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~-------~~~y~~t~~~~~~ 69 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-------DGKWSLTEFADYM 69 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec-------CCcEecchhHHhh
Confidence 35789999999999999986 79999999999999 679999999999999999986 5899999999855
Q ss_pred hcCCCCC----hHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhh-cCccc
Q 017835 111 LKDHPLS----LAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMA-SDTRL 185 (365)
Q Consensus 111 ~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~ 185 (365)
..+++.. ..++..+. .......|.+|.++++++ ++|...++ +....++. ..|...|. .....
T Consensus 70 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~------~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~ 136 (306)
T TIGR02716 70 FSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ------KNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKF 136 (306)
T ss_pred ccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC------cccccccC-----CCCCCHHH-HHhHHHHHHhcchh
Confidence 5443311 11222222 111235678999999854 23332221 11111122 22333333 33333
Q ss_pred chHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC
Q 017835 186 TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP 257 (365)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~ 257 (365)
..+.+.+.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|++++.+|+++ ++|
T Consensus 137 ~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 137 AIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 3455666666 77889999999999999999999999999999999988887763 4689999999997 677
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhh-hhhhhhhccCccccCHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLF-MDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~t~~e 336 (365)
++|+|++++++|+|+++.+.++|++++++|+| ||+++|.|.+.++.... .+...... ....+. ..-...++.++
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~e 289 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENP-NFDYLSHYILGAGMP-FSVLGFKEQAR 289 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc-hhhHHHHHHHHcccc-cccccCCCHHH
Confidence 89999999999999999889999999999999 99999999988665422 11111111 111111 11122346899
Q ss_pred HHHHHHhcCCccceEE
Q 017835 337 WAKLFFEAGFSDYKIT 352 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~ 352 (365)
|.++|+++||+.+++.
T Consensus 290 ~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 290 YKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHcCCCeeEec
Confidence 9999999999987654
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=1.4e-38 Score=283.78 Aligned_cols=235 Identities=36% Similarity=0.715 Sum_probs=204.0
Q ss_pred cceEecCccchhhhcCCC-CChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHH
Q 017835 98 EEGYILTSASKLLLKDHP-LSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFN 176 (365)
Q Consensus 98 ~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (365)
++.|++|+.|+.|..+++ .++..++.++..+..+..|.+|.+++++|. ++|+..+|.++|+++.++++..+.|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-----~~~~~~~g~~~~~~~~~~~~~~~~f~ 77 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-----PPFEKAFGTPFFEYLEEDPELAKRFN 77 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS------HHHHHHSS-HHHHHHCSHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-----CHHHHhcCCcHHHhhhhChHHHHHHH
Confidence 589999999997776665 568888877667778999999999999997 88999999899999999999999999
Q ss_pred HHhhcCcccch-HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCC
Q 017835 177 EGMASDTRLTS-SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA 255 (365)
Q Consensus 177 ~~m~~~~~~~~-~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~ 255 (365)
++|...+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.+|++++
T Consensus 78 ~~m~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~ 155 (241)
T PF00891_consen 78 AAMAEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDP 155 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC
T ss_pred HHHHhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhh
Confidence 99999887776 66777788 7888999999999999999999999999999999999999999899999999999998
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCC--cEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKA--GKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
+|.+|+|+++++||+|+++++.++|++++++|+| | |+|+|+|.+.++....+........+|++|+..++|++||
T Consensus 156 ~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt 232 (241)
T PF00891_consen 156 LPVADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERT 232 (241)
T ss_dssp CSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EE
T ss_pred hccccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcC
Confidence 8899999999999999999999999999999999 8 9999999999988766422222358999999988999999
Q ss_pred HHHHHHHHH
Q 017835 334 EKEWAKLFF 342 (365)
Q Consensus 334 ~~e~~~ll~ 342 (365)
.+||++||+
T Consensus 233 ~~e~~~ll~ 241 (241)
T PF00891_consen 233 EEEWEALLK 241 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999984
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.76 E-value=2.5e-17 Score=143.37 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=120.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++.+|||||||||..+..+++..+..+++++|. +.|++.+++ ...|+++.+|+.+ |+| +||+|.+++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 34789999999999999999999999999999999 999999885 2339999999999 888 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh-hhhcc------C-----------c
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML-MMVLV------K-----------G 329 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~------~-----------~ 329 (365)
|+++++. .+.|++++|+||| ||+++++|...+...... .....+.+. .+... + .
T Consensus 129 lrnv~d~--~~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~ 200 (238)
T COG2226 129 LRNVTDI--DKALKEMYRVLKP---GGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIR 200 (238)
T ss_pred hhcCCCH--HHHHHHHHHhhcC---CeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHH
Confidence 9999987 7899999999999 999999999887654321 111111111 11101 1 1
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCC-ceeEEE
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLG-VRSLIE 362 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~ 362 (365)
+..+.+++.++++++||+.+....... ...+..
T Consensus 201 ~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 201 RFPDQEELKQMIEKAGFEEVRYENLTFGIVALHR 234 (238)
T ss_pred hCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEE
Confidence 223889999999999999888665543 344433
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.76 E-value=4e-17 Score=146.74 Aligned_cols=160 Identities=20% Similarity=0.246 Sum_probs=119.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCC-CCC--CceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-AIP--PADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~~--~~D~i~ 263 (365)
..++.+|||||||+|.++..+++.+ |..+++++|+ +.|++.+++ ..+++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 6779999999 899988763 2479999999987 665 499999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh--h-hc-c-----------C
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM--M-VL-V-----------K 328 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~-~~-~-----------~ 328 (365)
+..++|+++++ .++|++++++||| ||++++.|...+......++ ...++.... . .. . -
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999999876 6889999999999 99999999876553221100 000111000 0 00 0 0
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEcCC-ceeEEEEe
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDVLG-VRSLIEVY 364 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~ 364 (365)
...++.+++.++++++||+.++.....+ ...+..++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 2345999999999999999998888754 45565554
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.76 E-value=3.5e-18 Score=150.29 Aligned_cols=161 Identities=19% Similarity=0.328 Sum_probs=81.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..++.+|||+|||||..+..+++.. |+.+++++|. +.|++.+++ ..+|+++.+|..+ |++ .||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5677899999999999999999874 6789999999 999999885 3589999999988 776 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh--hh--ccC------------cc
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM--MV--LVK------------GE 330 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~--~~~------------~~ 330 (365)
.+|++++. .+.|++++|+||| ||+++|+|...+...... .....++.... .. ..+ ..
T Consensus 125 glrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHH--HHHHH-----------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCCchhh--ceeeeeeccccccccccccccccccccccccccc
Confidence 99999987 6789999999999 999999999887653210 00111111000 00 001 11
Q ss_pred ccCHHHHHHHHHhcCCccceEEEcC-CceeEEEEeC
Q 017835 331 ERNEKEWAKLFFEAGFSDYKITDVL-GVRSLIEVYP 365 (365)
Q Consensus 331 ~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 365 (365)
..+.+++.++++++||+.++..+.. |...+..++|
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccCC
Confidence 2278999999999999999887774 4456655543
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.75 E-value=7.1e-18 Score=150.16 Aligned_cols=149 Identities=12% Similarity=0.152 Sum_probs=115.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~v 267 (365)
.+..+|||||||+|.++..+++.+ |+++++++|+ +.+++.+++ ..+++++.+|+.+ +.+.+|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 467899999999999999999874 7899999999 899988864 3478999999987 6678999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh------------------ccCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV------------------LVKG 329 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~------------------~~~~ 329 (365)
+||+++++...+|++++++|+| ||.+++.|.+.+....... ....+.... ...-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999988788999999999999 9999999987655332110 011110000 0112
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcC
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
...|.+++.++++++||+.+++....
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~ 229 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQC 229 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 34599999999999999987664443
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.73 E-value=1.3e-16 Score=143.65 Aligned_cols=155 Identities=15% Similarity=0.241 Sum_probs=119.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~ 259 (365)
..++..+. +.+..+|||||||+|..+..+++.+ +++++++|+ +.+++.+++ ..++.++.+|+.+ +++ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 44566665 7788999999999999999998775 679999999 888887775 4579999999987 555 49
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..+++|++.++...+|++++++|+| ||++++.+.......... . ...... . .......+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~~~-~-~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKAYI-K-KRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHHHH-H-hcCCCCCCHHHHHH
Confidence 999999999999866678999999999999 999999998665432110 1 111110 0 01123458899999
Q ss_pred HHHhcCCccceEEEcC
Q 017835 340 LFFEAGFSDYKITDVL 355 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~ 355 (365)
+|+++||+.+.+....
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999888764
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=1.4e-16 Score=141.13 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=123.4
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-- 257 (365)
.++..+. ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3444555 5677899999999999999999885 6789999999 888877764 3579999999977 444
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhh-hhhhh---------------
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQ-LFMDM--------------- 321 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~-~~~d~--------------- 321 (365)
.||+|++..++|++++. .++|+++.++|+| ||++++.+...+.... +.... .++..
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKE 185 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHH
Confidence 49999999999998876 6899999999999 9999998875443211 10000 00000
Q ss_pred -hhhhccCccccCHHHHHHHHHhcCCccceEEEcC-CceeEEEEeC
Q 017835 322 -LMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL-GVRSLIEVYP 365 (365)
Q Consensus 322 -~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 365 (365)
...........+.+++.++|+++||+++++.... +..+++.++|
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 186 YSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000001223478999999999999999998886 6678888775
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=4.5e-17 Score=145.52 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=113.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK--FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~v 267 (365)
.+..+|||||||+|..+..+++. +|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 56789999999999999999884 68999999999 999998875 3489999999987 6667999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh------hh-------hccC-ccccC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML------MM-------VLVK-GEERN 333 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~------~~-------~~~~-~~~~t 333 (365)
+|++++++...++++++++|+| ||.+++.|.+........+. ....+.++. .. ...+ -...+
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 9999988778999999999999 99999999776544322110 000111110 00 0000 11238
Q ss_pred HHHHHHHHHhcCCccceEE
Q 017835 334 EKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~ 352 (365)
.++..++|+++||+.+..+
T Consensus 211 ~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 211 VETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHHcCchhHHHH
Confidence 8999999999999876543
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.70 E-value=7.3e-16 Score=143.82 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=111.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 789999999 888877664 3579999999987 555 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccC-ccch-hhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKAD-YKTT-ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~-~~~~-~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
+||+++. .+++++++++|+| ||++++.++........ .... .....++-...........+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999886 6899999999999 99999988754322111 0010 00011111011001112348999999999999
Q ss_pred CccceEEEcC
Q 017835 346 FSDYKITDVL 355 (365)
Q Consensus 346 f~~~~~~~~~ 355 (365)
|.++++....
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999887664
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=4.7e-16 Score=139.76 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=110.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC--CCCceEEEe
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA--IPPADAVLI 264 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~~~~D~i~~ 264 (365)
..+++.++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+. .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 45666666 56779999999999999999999999999999999 889998874 5789999998763 235999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchh-h---hhhhhhh-hhhc-cCccccCHHHHH
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE-T---QLFMDML-MMVL-VKGEERNEKEWA 338 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~-~---~~~~d~~-~~~~-~~~~~~t~~e~~ 338 (365)
+.++||++++ .+++++++++|+| ||++++..+..... ....... . ..+.... .... ......+.+++.
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 169 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFDA-PSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYA 169 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcCC-hhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHH
Confidence 9999999876 6889999999999 99988864321110 0000000 0 0010000 0000 112345899999
Q ss_pred HHHHhcCCccce
Q 017835 339 KLFFEAGFSDYK 350 (365)
Q Consensus 339 ~ll~~aGf~~~~ 350 (365)
++|+++||++..
T Consensus 170 ~~l~~aGf~v~~ 181 (255)
T PRK14103 170 ELLTDAGCKVDA 181 (255)
T ss_pred HHHHhCCCeEEE
Confidence 999999998543
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=2.8e-15 Score=138.44 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=109.7
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-Cc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~ 259 (365)
+...++ ...+.+|||||||+|.++..++..++. +++++|. +.++.+++. ..++.++.+|+.+ +.+ .|
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344454 234689999999999999999998765 6999998 555543221 3579999999877 544 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||..++ ..+|+++++.|+| ||.+++...+.+...... ......+..+ . .....++.+++.+
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~~--~--~~~~lps~~~l~~ 260 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAKM--R--NVYFIPSVPALKN 260 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhcC--c--cceeCCCHHHHHH
Confidence 999999999999887 6789999999999 999988766655443221 1011111111 0 0012358999999
Q ss_pred HHHhcCCccceEEEc
Q 017835 340 LFFEAGFSDYKITDV 354 (365)
Q Consensus 340 ll~~aGf~~~~~~~~ 354 (365)
+++++||+++++...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999999988765
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.65 E-value=2.1e-15 Score=117.93 Aligned_cols=98 Identities=24% Similarity=0.463 Sum_probs=83.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCC-CC-C-CCCceEEEecc-c
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNM-FE-A-IPPADAVLIKC-V 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~-~~-~-~~~~D~i~~~~-v 267 (365)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+ .. + .++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999999999999999999999 888888774 68999999999 33 2 33699999999 6
Q ss_pred cccCCh-hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWND-EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+|++.. ++..++|+++++.|+| ||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 665543 5778999999999999 88888865
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.65 E-value=2.6e-15 Score=138.20 Aligned_cols=140 Identities=29% Similarity=0.425 Sum_probs=111.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~ 271 (365)
.+..+|||||||+|.++..+++..+..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 4568999999999999999999888889999999 888888775 3578999999987 554 49999999999999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
+++ ..+|++++++|+| ||++++++...+.... .....+..+ ...+.+|+.++|+++||+.+++
T Consensus 192 ~d~--~~~L~e~~rvLkP---GG~LvIi~~~~p~~~~------~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDP--QRGIKEAYRVLKI---GGKACLIGPVHPTFWL------SRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCH--HHHHHHHHHhcCC---CcEEEEEEecCcchhH------HHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 987 5789999999999 9999988765432110 001111111 1248899999999999999988
Q ss_pred EEcC
Q 017835 352 TDVL 355 (365)
Q Consensus 352 ~~~~ 355 (365)
....
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 8764
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.65 E-value=3.7e-15 Score=136.19 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=108.8
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc-------cCCCeEEEeCCCCC-CC-CCc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK-------SNGNLKYVGGNMFE-AI-PPA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~-~~~ 259 (365)
++..+. ...+++|||||||+|.++..++..++. +++++|. +.++.+++ ...++.+...++.+ +. ..|
T Consensus 113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 444444 455689999999999999999988654 7999998 65655432 14678888888766 32 369
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||+.++ ...|++++++|+| ||.|++.+.+.+...... ......+.. +. ......+..++.+
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~k--~~--nv~flpS~~~L~~ 259 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYAK--MK--NVYFIPSVSALKN 259 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHHh--cc--ccccCCCHHHHHH
Confidence 999999999999887 6789999999999 999999877665432211 000011110 00 0012348899999
Q ss_pred HHHhcCCccceEEEc
Q 017835 340 LFFEAGFSDYKITDV 354 (365)
Q Consensus 340 ll~~aGf~~~~~~~~ 354 (365)
+++++||+.+++...
T Consensus 260 ~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 260 WLEKVGFENFRILDV 274 (314)
T ss_pred HHHHCCCeEEEEEec
Confidence 999999999988765
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.65 E-value=9.3e-15 Score=130.00 Aligned_cols=166 Identities=24% Similarity=0.319 Sum_probs=121.6
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-- 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-- 257 (365)
++..+. ..+..+|||||||+|.++..++..+| ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 344444 34668999999999999999999987 789999999 777777764 2568999999987 333
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-----hccC----
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-----VLVK---- 328 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~---- 328 (365)
.||+|++.+++|++++. ..+|+++.++|+| ||++++++...+..... ......+..... ...+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAEA 192 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcHH
Confidence 59999999999998876 6889999999999 99999998866543211 000000000000 0000
Q ss_pred --------ccccCHHHHHHHHHhcCCccceEEEcC-CceeEEEEeC
Q 017835 329 --------GEERNEKEWAKLFFEAGFSDYKITDVL-GVRSLIEVYP 365 (365)
Q Consensus 329 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 365 (365)
...++.++|.++|+++||+++.+.... +...++.+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 193 YSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123478999999999999999998864 5678888764
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=5.3e-15 Score=144.80 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=117.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~ 258 (365)
..+++.+. .+++.+|||||||+|..+..+++.+ +++++++|+ +.+++.+++ ..+++++.+|+.+ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34555555 5677899999999999999998876 789999999 788887764 3579999999987 555 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++..+++|++++ ..+|++++++|+| ||++++.++......... ....++ . ..+...++.+++.
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~---~--~~g~~~~~~~~~~ 399 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEYI---K--QRGYDLHDVQAYG 399 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHHH---H--hcCCCCCCHHHHH
Confidence 9999999999999887 6899999999999 999999988764422211 111111 1 1234566899999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
++++++||+++.+....
T Consensus 400 ~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 400 QMLKDAGFDDVIAEDRT 416 (475)
T ss_pred HHHHHCCCeeeeeecch
Confidence 99999999998776543
No 19
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.64 E-value=1e-14 Score=128.27 Aligned_cols=160 Identities=20% Similarity=0.211 Sum_probs=119.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
..++.+|||+|||+|..+..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|+++.++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999999886 79999999 777777664 3578999999987 443 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc-----------------Cccc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV-----------------KGEE 331 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~~ 331 (365)
|+.++. ..+++++++.|+| ||++++.+...+.... +......+...+.... ....
T Consensus 117 ~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (223)
T TIGR01934 117 RNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANAL---LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF 188 (223)
T ss_pred CCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchh---hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhC
Confidence 988876 6899999999999 9999999876544321 1000000000000000 0123
Q ss_pred cCHHHHHHHHHhcCCccceEEEcCCc-eeEEEEeC
Q 017835 332 RNEKEWAKLFFEAGFSDYKITDVLGV-RSLIEVYP 365 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 365 (365)
.+.++|.++|+++||+++++.+..+. ..+++++|
T Consensus 189 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 189 PSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 47899999999999999999888665 67877775
No 20
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=3.9e-15 Score=131.27 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=107.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEeccccccC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNW 271 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~ 271 (365)
++|||||||+|..+..+++.+|+++++++|+ +.+++.+++ ..+++++..|+.+ +.+ .||+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777777664 4688999999866 444 59999999999999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
++. ..+|++++++|+| ||++++.+.......... . .. ......+..+|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~--~~--------~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE---H--EE--------TTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc---c--cc--------cccccCCHHHHHHHHHHCCCeEEEe
Confidence 875 6899999999999 999999987543211100 0 00 0111348899999999999999988
Q ss_pred EEcC
Q 017835 352 TDVL 355 (365)
Q Consensus 352 ~~~~ 355 (365)
....
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7764
No 21
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.63 E-value=4.1e-15 Score=123.90 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=97.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCCCceEEEeccccccCCh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIPPADAVLIKCVLHNWND 273 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~~D~i~~~~vlh~~~~ 273 (365)
..+..+|||||||+|.++..+.+. +.+++++|+ +.+++. ..+.....+... +...||+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 467889999999999999999666 349999999 777776 223333322223 2236999999999999997
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc--cCccccCHHHHHHHHHhcCCccce
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL--VKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+ ..+|+++++.|+| ||.+++.++........ ....+..... .....++.++|+++++++||++++
T Consensus 94 ~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 P--EEFLKELSRLLKP---GGYLVISDPNRDDPSPR-------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHCEEE---EEEEEEEEEBTTSHHHH-------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred H--HHHHHHHHHhcCC---CCEEEEEEcCCcchhhh-------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6 7899999999999 89999988876431110 1111111111 234567999999999999999875
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.62 E-value=2.2e-15 Score=124.58 Aligned_cols=138 Identities=25% Similarity=0.415 Sum_probs=102.2
Q ss_pred cCCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC-CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIA-KKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP-PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~-~~D~i~~~~ 266 (365)
+...+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ .+++++..+|+.+ + ++ .||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 456899999999999999999 5588999999999 999998875 4589999999999 4 43 699999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhh-hhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQL-FMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
++|++++. ..+|+++.+.|++ +|.+++.+....+..... ...... ......+. ..+. +.++|..+|+++|
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMNLYSEVWSMI-YIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHHHHHHHHHHC-C-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHHHHHHHhhhh-hccc--CHHHHHHHHHhcC
Confidence 99999987 6889999999999 899999988732221110 100001 01111110 1112 7889999999988
No 23
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.62 E-value=4.7e-15 Score=133.40 Aligned_cols=159 Identities=12% Similarity=0.129 Sum_probs=111.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++++. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45677777 8999999999999999999999998 899999999 777776653 578999999987643489
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-hccCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-VLVKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~t~~e~~ 338 (365)
|.|++..++.|+..+....+++++.+.|+| ||++++............ ......++... ...+|...+.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHH
Confidence 999999999999988889999999999999 999988777765543211 00000122111 12467777999999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
..++++||++..+...+
T Consensus 203 ~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHTT-EEEEEEE-H
T ss_pred HHHhcCCEEEEEEEEcC
Confidence 99999999998887664
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=1.3e-14 Score=125.06 Aligned_cols=140 Identities=18% Similarity=0.207 Sum_probs=106.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-~ 258 (365)
+.+++.+. ..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 45555565 455689999999999999999986 579999999 888887764 2458888899876 444 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++..++|++++++...++++++++|+| ||++++++....++.... . . .....+.+|+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~---~-----~-------~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---V-----G-------FPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC---C-----C-------CCCccCHHHHH
Confidence 9999999999999888889999999999999 999887765543322110 0 0 01124788898
Q ss_pred HHHHhcCCccceE
Q 017835 339 KLFFEAGFSDYKI 351 (365)
Q Consensus 339 ~ll~~aGf~~~~~ 351 (365)
++++ ||+++..
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 8887 8987665
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=3.1e-15 Score=137.34 Aligned_cols=148 Identities=15% Similarity=0.117 Sum_probs=106.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
++.+|||||||+|.++..+++. +.+++++|. +.+++.++. ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4579999999999999988864 789999999 888888774 2479999999866 433 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh-ccCccccCHHHHHHHHHhcCCc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV-LVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
||++++ ..+|++++++|+| ||.+++......................+.-.. ....+.++.+|+.++|+++||+
T Consensus 209 eHv~d~--~~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 999988 6899999999999 899998875432110000000000001110000 0012356999999999999999
Q ss_pred cceEEEc
Q 017835 348 DYKITDV 354 (365)
Q Consensus 348 ~~~~~~~ 354 (365)
++++.-+
T Consensus 284 i~~~~G~ 290 (322)
T PLN02396 284 VKEMAGF 290 (322)
T ss_pred EEEEeee
Confidence 9888554
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.61 E-value=1.8e-14 Score=130.86 Aligned_cols=146 Identities=21% Similarity=0.351 Sum_probs=111.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
++++.+|||||||+|..+..+++. .+..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567889999999999988877765 46678999999 888888875 3589999999877 554 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
++|++++. .++|+++.++|+| ||++++.+......... . ...+..+.....+...+.++|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPE----E--IRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCH----H--HHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99988776 6789999999999 99999998876442211 1 111112221123445688999999999999
Q ss_pred ccceEEEc
Q 017835 347 SDYKITDV 354 (365)
Q Consensus 347 ~~~~~~~~ 354 (365)
..+++...
T Consensus 224 ~~v~i~~~ 231 (272)
T PRK11873 224 VDITIQPK 231 (272)
T ss_pred CceEEEec
Confidence 98877443
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=9.8e-15 Score=131.20 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=106.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--CCC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--AIP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~~--~~D~i~~~~ 266 (365)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 578999999 889988874 3578999999865 232 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch-hhhhh-hhhhh---hhccCccccCHHHHHHHH
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT-ETQLF-MDMLM---MVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-~~~~~-~d~~~---~~~~~~~~~t~~e~~~ll 341 (365)
++||++++ ..+|+++.++|+| ||.+++............... ..... ..+.. .........+.+++.+++
T Consensus 121 vl~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 99999887 5789999999999 999988755432110000000 00000 00000 000112235889999999
Q ss_pred HhcCCccceEEEcCCc
Q 017835 342 FEAGFSDYKITDVLGV 357 (365)
Q Consensus 342 ~~aGf~~~~~~~~~~~ 357 (365)
+++||+++.+.-+..+
T Consensus 196 ~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 196 EEAGWQIMGKTGVRVF 211 (255)
T ss_pred HHCCCeEeeeeeEEEE
Confidence 9999999876655443
No 28
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.59 E-value=3e-14 Score=121.89 Aligned_cols=147 Identities=23% Similarity=0.288 Sum_probs=111.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHHHhccc---------CCCeEEEeCCCCC-CCC--C
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH------IECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-AIP--P 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~~--~ 258 (365)
.....++||++||||..+..+++.-+. .++++.|+ |+|+..+++ ..++.++++|..+ |+| .
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 345699999999999999999998766 78999999 999998774 4569999999998 888 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh---------------h
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML---------------M 323 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---------------~ 323 (365)
+|.|++..-+-+|++. .+.|++++|+||| ||++.++|+.--+......+ .....++.. .
T Consensus 178 ~D~yTiafGIRN~th~--~k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~f-y~~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHI--QKALREAYRVLKP---GGRFSCLEFSKVENEPLKWF-YDQYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred ceeEEEecceecCCCH--HHHHHHHHHhcCC---CcEEEEEEccccccHHHHHH-HHhhhhhhhchhhHhhhhhHhhhhh
Confidence 9999999999999998 7889999999999 99999999855442111000 000111110 0
Q ss_pred hhccCccccCHHHHHHHHHhcCCccce
Q 017835 324 MVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 324 ~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+...-.+..+.++++.+.+++||+.+.
T Consensus 252 LveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 101112233889999999999999886
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=2.1e-14 Score=127.26 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=126.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++++. ++++.+|||||||-|.+++.+++.+ +++++++++ +++.+.+++ ..++++...|..+-.+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 45677787 8999999999999999999999999 899999999 777777664 458999999987755559
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-hccCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-VLVKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~t~~e~~ 338 (365)
|-|++..+++|+..+.-..+|+++++.|+| ||++++.....++.... ...++... ...+|..++..++.
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~ 208 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEIL 208 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHH
Confidence 999999999999998889999999999999 99999988877664431 11111111 13578888999999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
+..+++||.+..+..+.
T Consensus 209 ~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 209 ELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHhcCcEEehHhhhc
Confidence 99999999988776654
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=8.8e-14 Score=125.33 Aligned_cols=106 Identities=18% Similarity=0.337 Sum_probs=91.1
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCC--CCceEE
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAI--PPADAV 262 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~--~~~D~i 262 (365)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.++.+|+.+.. ..||+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 345666666 67789999999999999999999999999999999 888988876 567899999987632 369999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++..++|++++. ..+|++++++|+| ||.+++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999999988876 6899999999999 8988875
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=1e-13 Score=123.26 Aligned_cols=156 Identities=20% Similarity=0.290 Sum_probs=111.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--Cc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~ 259 (365)
+++.+. ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++..+|+.. +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344455 6778899999999999999999987 7889999999 777776654 4678999999876 444 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc-hhhhhhhhhhhhhccCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT-TETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
|+|++..+++|+++. ..++++++++|+| ||.+++.++........... ...........- ......+..+|.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 999999999999887 6789999999999 99999988643221111000 001111111110 112234567899
Q ss_pred HHHHhcCCccceEEEc
Q 017835 339 KLFFEAGFSDYKITDV 354 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~ 354 (365)
++++++||+.+++...
T Consensus 162 ~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 162 GLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHcCCCceeEEEE
Confidence 9999999998766543
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.55 E-value=1e-13 Score=121.70 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=116.2
Q ss_pred hhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhc
Q 017835 161 FWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADL 239 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 239 (365)
.|+.++..++....+...|..........+++.+.....+..+|||||||+|.++..+++. +.+++++|. +.++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 3444444433334444433222222223333333311245789999999999999999876 568999999 8888887
Q ss_pred cc-------CCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc
Q 017835 240 KS-------NGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312 (365)
Q Consensus 240 ~~-------~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 312 (365)
++ ..++++..+|+.+....||+|++..+++|++.+....+++++.+.+++ + .++.+.+ .... .
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~---~-~~i~~~~---~~~~---~ 163 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE---R-VIFTFAP---KTAW---L 163 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC---C-EEEEECC---CchH---H
Confidence 64 248999999987744679999999999999887778899999999886 4 3333221 1100 0
Q ss_pred hhhhhhhhhhhhhc---cCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 313 TETQLFMDMLMMVL---VKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 313 ~~~~~~~d~~~~~~---~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
.....+.-..... ..-..++.+++.++++++||+++......
T Consensus 164 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 164 -AFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred -HHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 0000111000000 11123489999999999999999887654
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=1.3e-13 Score=118.69 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=103.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~ 259 (365)
..+.+.+. ..+..+|||+|||+|..+..++++ +.+++++|. +.+++.+++ .-++.+...|+.. +.+ .|
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 34555555 445679999999999999999986 579999999 888887653 2246777778765 333 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++|+++.+....++++++++|+| ||++++++.......... . ......+.+|+.+
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~---~------------~~~~~~~~~el~~ 157 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCH---M------------PFSFTFKEDELRQ 157 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCC---C------------CcCccCCHHHHHH
Confidence 999999999999888888999999999999 999888776543321110 0 0011348889988
Q ss_pred HHHhcCCccceEE
Q 017835 340 LFFEAGFSDYKIT 352 (365)
Q Consensus 340 ll~~aGf~~~~~~ 352 (365)
+|. +|+++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 886 47776655
No 34
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=5e-14 Score=106.27 Aligned_cols=88 Identities=26% Similarity=0.479 Sum_probs=75.7
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHH
Q 017835 205 VDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECV 277 (365)
Q Consensus 205 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~ 277 (365)
||+|||+|..+..+++. +..+++++|. +.+++.+++ ..++.++.+|+.+ +++ .||+|++.+++||+++. .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~--~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP--E 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH--H
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCH--H
Confidence 79999999999999998 8899999999 888888876 5667799999988 666 49999999999999444 8
Q ss_pred HHHHHHHHhcccCCCCcEEEE
Q 017835 278 KILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 278 ~~L~~i~~~L~p~~~gG~lli 298 (365)
+++++++|+||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 999999999999 888875
No 35
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.54 E-value=1.7e-13 Score=115.78 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=123.1
Q ss_pred cCCC-eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc----c--CCCe-EEEeCCCCCC---CC--------C
Q 017835 199 EGLN-TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK----S--NGNL-KYVGGNMFEA---IP--------P 258 (365)
Q Consensus 199 ~~~~-~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~~i-~~~~~d~~~~---~~--------~ 258 (365)
.... +|||||+|||..+..+++.+|+++..-.|. +....... . .+++ .-+..|+.++ .+ .
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3334 599999999999999999999999888887 33322222 1 2222 2234566552 21 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc-cCccccCHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL-VKGEERNEKEW 337 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~t~~e~ 337 (365)
||+|++.+++|-.+.+.+..+++.+.++|+| ||.|+++-+...+....+ .....||-..... .....|+.+++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v 176 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDV 176 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHH
Confidence 9999999999999999999999999999999 999999999887765432 3334566555443 34677899999
Q ss_pred HHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 338 AKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.++.+++||+..+++.+|....+++++|
T Consensus 177 ~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 177 EALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 9999999999999999999877777665
No 36
>PRK06922 hypothetical protein; Provisional
Probab=99.54 E-value=8.9e-14 Score=135.74 Aligned_cols=143 Identities=19% Similarity=0.273 Sum_probs=108.1
Q ss_pred CChhHHHhhCchHHHHHHHHhhcCccc--chHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH
Q 017835 159 MNFWDYAVRETRLNHFFNEGMASDTRL--TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHV 235 (365)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 235 (365)
..+|+++...++..+.|...|...... ........++ ..++.+|||||||+|..+..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 367888887777777776555432211 1111122233 34678999999999999999999999999999999 788
Q ss_pred HHhccc-----CCCeEEEeCCCCC-C--CC--CceEEEeccccccC-----------ChhHHHHHHHHHHHhcccCCCCc
Q 017835 236 VADLKS-----NGNLKYVGGNMFE-A--IP--PADAVLIKCVLHNW-----------NDEECVKILKNCKKAIAINGKAG 294 (365)
Q Consensus 236 ~~~a~~-----~~~i~~~~~d~~~-~--~~--~~D~i~~~~vlh~~-----------~~~~~~~~L~~i~~~L~p~~~gG 294 (365)
++.+++ ..++.++.+|+.+ + ++ .||+|+++.++|+| +++...++|++++++||| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 888764 2467888899876 3 33 49999999999986 245678999999999999 99
Q ss_pred EEEEEeeecCCC
Q 017835 295 KVIIIDIKMESE 306 (365)
Q Consensus 295 ~lli~e~~~~~~ 306 (365)
++++.|.+.++.
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999999766543
No 37
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.53 E-value=1e-13 Score=114.86 Aligned_cols=150 Identities=19% Similarity=0.126 Sum_probs=109.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeE-EEeCCCCC-C-CC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLK-YVGGNMFE-A-IP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~-~~~~d~~~-~-~~--~~D~i~~~~ 266 (365)
+....+|+||||+|..-.. -.--|.+++|.+|. +.|.+.+.+ ..++. |+.++..+ + .+ +||+|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 4556889999999987432 22236889999999 777776653 45566 78887776 4 34 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+|.-..++ ++.|++++++|+| ||+++++|++..+.+... .......+......+.|+..|.+.|+ .|+++-|
T Consensus 154 vLCSve~~--~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n--~i~q~v~ep~~~~~~dGC~ltrd~~e-~Leda~f 225 (252)
T KOG4300|consen 154 VLCSVEDP--VKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWN--RILQQVAEPLWHLESDGCVLTRDTGE-LLEDAEF 225 (252)
T ss_pred EEeccCCH--HHHHHHHHHhcCC---CcEEEEEecccccchHHH--HHHHHHhchhhheeccceEEehhHHH-Hhhhccc
Confidence 99754554 8999999999999 999999999987765431 12223444444444668888888884 5688899
Q ss_pred ccceEEEcCCc
Q 017835 347 SDYKITDVLGV 357 (365)
Q Consensus 347 ~~~~~~~~~~~ 357 (365)
+..+....+.+
T Consensus 226 ~~~~~kr~~~~ 236 (252)
T KOG4300|consen 226 SIDSCKRFNFG 236 (252)
T ss_pred ccchhhcccCC
Confidence 98887777544
No 38
>PRK06202 hypothetical protein; Provisional
Probab=99.52 E-value=4.4e-13 Score=118.76 Aligned_cols=150 Identities=21% Similarity=0.182 Sum_probs=101.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CC--CCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AI--PPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~--~~~D~i~~~~v 267 (365)
.+..+|||||||+|.++..|++. .|+.+++++|+ +.+++.+++ ..++++...+... +. ..||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 56689999999999998888764 46679999999 999988875 2456666554433 22 25999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccC-----ccccCHHHHHHHHH
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK-----GEERNEKEWAKLFF 342 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~t~~e~~~ll~ 342 (365)
+||+++++..++|++++++++ |.+++.+...+...... +........-....... .+.++.+|+.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 999999887899999999986 56666666544211100 00000000000000011 23459999999999
Q ss_pred hcCCccceEEEcC
Q 017835 343 EAGFSDYKITDVL 355 (365)
Q Consensus 343 ~aGf~~~~~~~~~ 355 (365)
+ ||++...++..
T Consensus 213 ~-Gf~~~~~~~~~ 224 (232)
T PRK06202 213 Q-GWRVERQWPFR 224 (232)
T ss_pred C-CCeEEecccee
Confidence 9 99987776654
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.52 E-value=1.6e-13 Score=114.67 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=127.6
Q ss_pred HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCC
Q 017835 174 FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGN 251 (365)
Q Consensus 174 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d 251 (365)
.|.++-...++.. .+++..++ ..+..+|+|+|||+|..+..|++++|+..++|+|- +.|++.|++ ..+++|..+|
T Consensus 7 ~Yl~F~~eRtRPa-~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aD 83 (257)
T COG4106 7 QYLQFEDERTRPA-RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEAD 83 (257)
T ss_pred HHHHHHHhccCcH-HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceeccc
Confidence 3444444555443 56888888 88899999999999999999999999999999998 999999876 7899999999
Q ss_pred CCCCCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhh--hhhhhhhhc-
Q 017835 252 MFEAIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQL--FMDMLMMVL- 326 (365)
Q Consensus 252 ~~~~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~--~~d~~~~~~- 326 (365)
+.+-.| +.|+++++.+||-++|. .++|.++...|.| ||.|.+.=+..-+............ -+...+...
T Consensus 84 l~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~ 158 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRG 158 (257)
T ss_pred HhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEECCCccCchhHHHHHHHHhcCchhhhhCccc
Confidence 988444 69999999999988887 7899999999999 8988886443222211100000000 011111110
Q ss_pred -cCccccCHHHHHHHHHhcCCccceEEEc------CCceeEEEEe
Q 017835 327 -VKGEERNEKEWAKLFFEAGFSDYKITDV------LGVRSLIEVY 364 (365)
Q Consensus 327 -~~~~~~t~~e~~~ll~~aGf~~~~~~~~------~~~~~vi~~~ 364 (365)
......+...+-++|...+-++ .+++. ++...|++..
T Consensus 159 ~~r~~v~s~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 159 LTRAPLPSPAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred cccCCCCCHHHHHHHhCccccee-eeeeeeccccCCCccchhhhe
Confidence 1223348899999999887664 34443 3345555543
No 40
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.51 E-value=3.3e-14 Score=122.49 Aligned_cols=143 Identities=19% Similarity=0.221 Sum_probs=107.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CC----CeEEEeCCCCCCCCCceEEEeccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NG----NLKYVGGNMFEAIPPADAVLIKCV 267 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----~i~~~~~d~~~~~~~~D~i~~~~v 267 (365)
+++|||||||+|.++..|++. +.+++++|+ +.+++.|++ .. |+++.+.|.....+.||+|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999998 589999999 889998875 22 467777777665667999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc-----CccccCHHHHHHHHH
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV-----KGEERNEKEWAKLFF 342 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~t~~e~~~ll~ 342 (365)
++|..|+ ..+++.+.+.|+| +|+++|......-..... ...+.+....... ..+..+.+++.+++.
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~~~----~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~ 238 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSFAG----TIFLAEIVLRIVPKGTHTWEKFINPEELTSILN 238 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHhhc----cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHH
Confidence 9999988 7899999999999 899999876553332211 1111111122111 234459999999999
Q ss_pred hcCCccceEEEc
Q 017835 343 EAGFSDYKITDV 354 (365)
Q Consensus 343 ~aGf~~~~~~~~ 354 (365)
.+|+++..+.-.
T Consensus 239 ~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 239 ANGAQVNDVVGE 250 (282)
T ss_pred hcCcchhhhhcc
Confidence 999987766443
No 41
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=3.2e-14 Score=121.83 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=103.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCC--eEEEeCCCCC-C--CCCceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGN--LKYVGGNMFE-A--IPPADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~--i~~~~~d~~~-~--~~~~D~i~~~~vlh~ 270 (365)
++.+|||||||.|.++..|++. +.+|+++|+ +..++.|+. .+. +.+.+....+ . ...||+|+|..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 5789999999999999999998 589999999 888998884 333 3355555554 2 246999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-hccCccccCHHHHHHHHHhcCCccc
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-VLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
.+++ ..+++++.+.+|| ||.+++......-...............+.-. ...-.+...++|+..++.++|+.+.
T Consensus 137 v~dp--~~~~~~c~~lvkP---~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 137 VPDP--ESFLRACAKLVKP---GGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred cCCH--HHHHHHHHHHcCC---CcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 9999 5699999999999 88888877653222110000000000100000 0011344588999999999999877
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
....+
T Consensus 212 ~~~g~ 216 (243)
T COG2227 212 DRKGL 216 (243)
T ss_pred eecce
Confidence 76555
No 42
>PRK05785 hypothetical protein; Provisional
Probab=99.50 E-value=5.1e-13 Score=117.47 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=105.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChhH
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEE 275 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~ 275 (365)
+..+|||||||+|.++..+++.+ +.+++++|. +.|++.+++. ..++.+|+.+ |++ .||+|++..++||+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46899999999999999999987 579999999 9999998753 3457788877 665 49999999999999887
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh---hhhccCc-------------cccCHHHHHH
Q 017835 276 CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML---MMVLVKG-------------EERNEKEWAK 339 (365)
Q Consensus 276 ~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~-------------~~~t~~e~~~ 339 (365)
.+.|++++++||| . +.++|...++...... ....++... +.....+ ...+.+++.+
T Consensus 127 -~~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~--~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 127 -EKVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRK--YLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred -HHHHHHHHHHhcC---c--eEEEEeCCCCcHHHHH--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 6789999999998 4 3344544333211000 000111100 0000111 1238899999
Q ss_pred HHHhcCCccceEEEcC-CceeEEEEeC
Q 017835 340 LFFEAGFSDYKITDVL-GVRSLIEVYP 365 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~-~~~~vi~~~~ 365 (365)
+++++| ..++...+. |...+..++|
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEEEee
Confidence 999984 667777774 4466666553
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.49 E-value=6.7e-13 Score=117.98 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=103.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CCC--CceEEEeccccccCCh
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~ 273 (365)
...+|||||||+|.++..+++.+|..+++++|. +.++..++. ..++.++.+|+.+ +++ .||+|++..++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 347999999999999999999999999999999 777777665 3578999999987 433 4999999999998877
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEE
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 352 (365)
. .++|++++++|+| ||.+++.++...... ....... .......+.++|.+++.++ |+...+.
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFGPGTLH------ELRQSFG-----QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCCccCHH------HHHHHHH-----HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 6 6799999999999 899998765432211 0000110 0123455888999999988 8866554
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=1.2e-12 Score=117.36 Aligned_cols=146 Identities=12% Similarity=0.138 Sum_probs=104.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAV 262 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i 262 (365)
..+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++ ...+.++.+|+.+ +++ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44555555 345689999999999999888764 579999999 889988875 3446788999877 554 49999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
+++.++|+.++. ..+|+++.++|+| ||.+++..+....-. .....+..........+..+.++|.+++.
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~------el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSLP------ELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCchH------HHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 999999877766 6899999999999 899988766432211 11111110000011234458899999999
Q ss_pred hcCCcc
Q 017835 343 EAGFSD 348 (365)
Q Consensus 343 ~aGf~~ 348 (365)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 888763
No 45
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.48 E-value=9.1e-13 Score=118.54 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHHhcccC--------------------------
Q 017835 199 EGLNTLVDVGGGTGT----LASAIAKKFP-----HIECTVFDQ-PHVVADLKSN-------------------------- 242 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 242 (365)
.+..+|+|+|||+|. ++..+++.++ +.+++++|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 445799999999996 4556666654 578999999 8999988751
Q ss_pred -------CCeEEEeCCCCCC-CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 243 -------GNLKYVGGNMFEA-IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 243 -------~~i~~~~~d~~~~-~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.+|+|..+|+.++ .+ .||+|+|.+++||++++...+++++++++|+| ||.|++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 3789999999984 32 59999999999999988888999999999999 89988854
No 46
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.48 E-value=5e-13 Score=115.53 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=89.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCCC--CceEEEeccccccCCh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~~~~ 273 (365)
..+..+|||||||+|..+..|++..|+.+++++|+ +.+++.+++ ..++.+..+|+.++++ .||+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34667999999999999999999888999999999 889999986 4678889999888654 5999999999999988
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
++..++++++.++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 788899999999974 788888876544
No 47
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.47 E-value=1e-12 Score=116.26 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=101.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~D~i~~~~vlh~ 270 (365)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++.+..+|+......||+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456899999999999999999874 56999999 888888774 24799999995434446999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh-h-hccCccccCHHHHHHHHHhcCCcc
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM-M-VLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
++++....+++++.+.+++ |.++..... .... ........... . ........+..+|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~~~---~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFAPY---TPLL---ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEECCc---cHHH---HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9998889999999987754 444433211 1000 00000000000 0 001123458899999999999999
Q ss_pred ceEEEcC
Q 017835 349 YKITDVL 355 (365)
Q Consensus 349 ~~~~~~~ 355 (365)
.++.+..
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9887764
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=8.6e-13 Score=129.27 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=110.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC---CCC--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE---AIP-- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~---~~~-- 257 (365)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. ..+++++.+|+.+ +++
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 44555555 4456799999999999999999874 48999999 888877653 4578999999964 344
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++..++||+++++..++|++++++|+| ||.+++.|.......... .. ......++..+|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHHH
Confidence 49999999999999998889999999999999 999999987654432210 00 012233578899
Q ss_pred HHHHHhcCCccce
Q 017835 338 AKLFFEAGFSDYK 350 (365)
Q Consensus 338 ~~ll~~aGf~~~~ 350 (365)
.+++.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 9999999998653
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.47 E-value=1.6e-14 Score=110.31 Aligned_cols=87 Identities=28% Similarity=0.465 Sum_probs=59.0
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CC---CeEEEeCCCCCCCC--CceEEEeccccccCC
Q 017835 205 VDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NG---NLKYVGGNMFEAIP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 205 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---~i~~~~~d~~~~~~--~~D~i~~~~vlh~~~ 272 (365)
||||||+|.++..+++.+|..+++++|+ +.+++.+++ .. ++++...|..+..+ .||+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 888877765 12 34444555444333 699999999999995
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEE
Q 017835 273 DEECVKILKNCKKAIAINGKAGKV 296 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~l 296 (365)
+. ..+|+++++.|+| ||+|
T Consensus 81 ~~--~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 DI--EAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp -H--HHHHHHHTTT-TS---S-EE
T ss_pred hH--HHHHHHHHHHcCC---CCCC
Confidence 54 7999999999999 8875
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.47 E-value=1.2e-12 Score=123.72 Aligned_cols=153 Identities=9% Similarity=0.076 Sum_probs=112.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCCCCCCceEEEe
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFEAIPPADAVLI 264 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~~~~~~D~i~~ 264 (365)
.+++.+. .+++.+|||||||+|.++..+++.+ +++++++|+ +.+++.+++ ...+++...|+.+....||+|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 3445555 6788999999999999999998876 679999999 888888775 23577888887653346999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhc
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEA 344 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 344 (365)
..+++|.++.....++++++++|+| ||++++.+...+...... ..+.+- ....++...+.+++.+.++ .
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~--yifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINK--YIFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCcee--eecCCCcCCCHHHHHHHHH-C
Confidence 9999999877778999999999999 999999876554322110 011111 1123456668888888766 5
Q ss_pred CCccceEEEcC
Q 017835 345 GFSDYKITDVL 355 (365)
Q Consensus 345 Gf~~~~~~~~~ 355 (365)
||.+..+...+
T Consensus 304 ~~~v~d~~~~~ 314 (383)
T PRK11705 304 LFVMEDWHNFG 314 (383)
T ss_pred CcEEEEEecCh
Confidence 88887776554
No 51
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=1.3e-12 Score=119.34 Aligned_cols=131 Identities=20% Similarity=0.164 Sum_probs=100.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEeccccccC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNW 271 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~ 271 (365)
+..+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++...|+.. +.+ .||+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 3469999999999999999886 579999999 788877653 2368888888876 344 59999999999999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
+++....+++++.++|+| ||.+++++....+....+ . .....++..|+.++++. |++++.
T Consensus 198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~-------p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------M-------PFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------C-------CCCcccCHHHHHHHhCC--CEEEEE
Confidence 988889999999999999 999888765543322110 0 00122478899998865 888776
Q ss_pred E
Q 017835 352 T 352 (365)
Q Consensus 352 ~ 352 (365)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=4e-13 Score=102.98 Aligned_cols=88 Identities=24% Similarity=0.431 Sum_probs=74.2
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CC--CCceEEEec-ccccc
Q 017835 204 LVDVGGGTGTLASAIAKKF---PHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AI--PPADAVLIK-CVLHN 270 (365)
Q Consensus 204 iLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~--~~~D~i~~~-~vlh~ 270 (365)
|||+|||+|..+..+.+.+ |..+++++|+ +.+++.+++ ..++++++.|+.+ ++ ..||+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999999 889998875 3589999999988 43 369999995 55999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCc
Q 017835 271 WNDEECVKILKNCKKAIAINGKAG 294 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG 294 (365)
+++++..++|+++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 66
No 53
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.45 E-value=1.6e-12 Score=115.40 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=105.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc---c----CCCeEEEeCCCCC-C-CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK---S----NGNLKYVGGNMFE-A-IP 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~----~~~i~~~~~d~~~-~-~~ 257 (365)
..+..+++ .-.+++|||||||+|.++..++.+.+. .++|+|. +....+.. + ..++.+...-+.+ + ..
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 44555564 235689999999999999999999654 6999996 33222222 1 2334444333333 2 23
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++..||+|..++ ...|+++++.|+| ||.|++-..+.+.+.... +....++..+ . ...-..|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~rYa~m--~--nv~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDRYAKM--R--NVWFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCcccCC--C--ceEEeCCHHHH
Confidence 59999999999999998 7899999999999 888887777766554321 1111111111 1 11223489999
Q ss_pred HHHHHhcCCccceEEEc
Q 017835 338 AKLFFEAGFSDYKITDV 354 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~ 354 (365)
..|++.+||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999988766
No 54
>PLN03075 nicotianamine synthase; Provisional
Probab=99.43 E-value=2.7e-12 Score=115.34 Aligned_cols=137 Identities=17% Similarity=0.217 Sum_probs=99.2
Q ss_pred cCCCeEEEecCCccHHHHH--HHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCCCC---CCceEEEe
Q 017835 199 EGLNTLVDVGGGTGTLASA--IAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEAI---PPADAVLI 264 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~---~~~D~i~~ 264 (365)
.++++|+|||||.|.++.. ++..+|+.+++++|. +.+++.|++ .++++|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 4779999999998855333 334689999999999 888887775 368999999998732 36999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhc
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEA 344 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 344 (365)
. ++|+|+.++-.++|+++++.|+| ||.+++--. .. .. .++ ....+.++.+
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~~---~G-------~r-~~L---------Yp~v~~~~~~------ 251 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRSA---HG-------AR-AFL---------YPVVDPCDLR------ 251 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEecc---cc-------hH-hhc---------CCCCChhhCC------
Confidence 9 99999766668999999999999 787777431 11 00 111 1222334332
Q ss_pred CCccceEEEc-CC-ceeEEEEeC
Q 017835 345 GFSDYKITDV-LG-VRSLIEVYP 365 (365)
Q Consensus 345 Gf~~~~~~~~-~~-~~~vi~~~~ 365 (365)
||++..+.+- +. ..++|.+++
T Consensus 252 gf~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 252 GFEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred CeEEEEEECCCCCceeeEEEEEe
Confidence 9998766555 33 388888875
No 55
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.43 E-value=5.9e-12 Score=106.97 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=104.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCC-CCceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAI-PPADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~-~~~D~i~~~~vlh~~ 271 (365)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ .-+++++.+|+.+.. +.||+|+++..+|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 4457899999999999999999876 8999999 888887764 236788999987743 369999999888766
Q ss_pred Chh-------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcccc
Q 017835 272 NDE-------------------ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEER 332 (365)
Q Consensus 272 ~~~-------------------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 332 (365)
++. ...++|+++.++|+| ||+++++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~---------------------------- 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN---------------------------- 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence 542 135789999999999 999998764221
Q ss_pred CHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 333 NEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
...++.+++++.||....+..-.-+.-.+.++
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 24677888999999988888777666655555
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.42 E-value=4.9e-12 Score=108.25 Aligned_cols=121 Identities=23% Similarity=0.386 Sum_probs=94.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh 269 (365)
..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 56778999999999999999999999999999999 888887764 3578999998865544 599999976654
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
+ ...+++++.+.|+| ||++++..... -+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 24678999999999 89887743211 034667788999999876
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
++...
T Consensus 153 ~~~~~ 157 (187)
T PRK08287 153 DCVQL 157 (187)
T ss_pred eEEEE
Confidence 65433
No 57
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=7.9e-12 Score=109.47 Aligned_cols=138 Identities=12% Similarity=0.158 Sum_probs=96.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhc----ccCCCeEEEeCCCCCC-----CC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADL----KSNGNLKYVGGNMFEA-----IP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~i~~~~~d~~~~-----~~-~~D~i~~~~ 266 (365)
.+++.+|||+|||+|.++..+++..+..+++++|. +.+++.+ +...++.++.+|...+ ++ .+|+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 67889999999999999999999887668999999 7666643 3346799999998753 12 4898874
Q ss_pred ccccCChh-HHHHHHHHHHHhcccCCCCcEEEEE-eeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhc
Q 017835 267 VLHNWNDE-ECVKILKNCKKAIAINGKAGKVIII-DIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEA 344 (365)
Q Consensus 267 vlh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 344 (365)
+.+++ ....+|++++++||| ||+++|. ... +.+... ...+..++..++++++
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~-~~d~~~-------------------~~~~~~~~~~~~l~~a 201 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKAR-SIDVTK-------------------DPKEIFKEEIRKLEEG 201 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecc-cccCcC-------------------CHHHHHHHHHHHHHHc
Confidence 34433 234568999999999 9999994 321 100000 0001123445899999
Q ss_pred CCccceEEEcCCc---eeEEEE
Q 017835 345 GFSDYKITDVLGV---RSLIEV 363 (365)
Q Consensus 345 Gf~~~~~~~~~~~---~~vi~~ 363 (365)
||++++....... +..+.+
T Consensus 202 GF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 202 GFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred CCeEEEEEcCCCCcCCeEEEEE
Confidence 9999999887433 444443
No 58
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.40 E-value=1.2e-11 Score=107.56 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=100.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCC-C---
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFE-A--- 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~--- 255 (365)
.++.+|||+|||.|..+..|+++ +.+|+++|+ +..++.+.. ..+|++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999987 789999999 777776421 3478999999998 3
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHH
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEK 335 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~ 335 (365)
.+.||.|+-..++||++.+.....++.+.++|+| ||+++++....+...... .....+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~g-----------------pp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAG-----------------PPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCC-----------------cCCCCCHH
Confidence 2359999999999999999989999999999999 898887766553221100 00124888
Q ss_pred HHHHHHHhcCCccceEEE
Q 017835 336 EWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~ 353 (365)
|+.++|.. +|.+..+..
T Consensus 171 eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 171 EVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHhcC-CceEEEEee
Confidence 99988864 455554433
No 59
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.40 E-value=3.5e-12 Score=116.92 Aligned_cols=144 Identities=16% Similarity=0.097 Sum_probs=96.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----C-------CCeEEEeCCCCCCCCCceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----N-------GNLKYVGGNMFEAIPPADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-------~~i~~~~~d~~~~~~~~D~i~~~~v 267 (365)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .++++...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 679999999 888887764 1 3578888887543346999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc---CccccCHHHHHHHHHhc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV---KGEERNEKEWAKLFFEA 344 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~t~~e~~~ll~~a 344 (365)
+||++++....+++.+.+. .+ |+++|.. .+.... +......... ..... ..-..+.+++.++|+++
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~~----g~liIs~--~p~~~~---~~~l~~~g~~-~~g~~~~~r~y~~s~eel~~lL~~A 290 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-AE----KRLIISF--APKTLY---YDILKRIGEL-FPGPSKATRAYLHAEADVERALKKA 290 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-cC----CEEEEEe--CCcchH---HHHHHHHHhh-cCCCCcCceeeeCCHHHHHHHHHHC
Confidence 9999988777888888754 44 4555432 111100 0000000000 00000 01123799999999999
Q ss_pred CCccceEEEcCC
Q 017835 345 GFSDYKITDVLG 356 (365)
Q Consensus 345 Gf~~~~~~~~~~ 356 (365)
||++........
T Consensus 291 Gf~v~~~~~~~~ 302 (315)
T PLN02585 291 GWKVARREMTAT 302 (315)
T ss_pred CCEEEEEEEeec
Confidence 999876655543
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=8e-12 Score=105.94 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=89.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C-CCCceEEEeccccccC
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A-IPPADAVLIKCVLHNW 271 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~~~~D~i~~~~vlh~~ 271 (365)
+.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ + ...||+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 68999999999999999998899999999999 777766553 3579999999977 2 23699998866 4432
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh---cCCcc
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE---AGFSD 348 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~---aGf~~ 348 (365)
..+++.+++.|+| ||++++... .. ...++..+.+. .||+.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~~------~~-----------------------~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYKG------KK-----------------------YLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEcC------CC-----------------------cHHHHHHHHHhhhhcCceE
Confidence 4568888999999 899887531 00 23344444444 79999
Q ss_pred ceEEEcCCc
Q 017835 349 YKITDVLGV 357 (365)
Q Consensus 349 ~~~~~~~~~ 357 (365)
+++.+..++
T Consensus 165 ~~~~~~~~~ 173 (181)
T TIGR00138 165 LEVPPLTGP 173 (181)
T ss_pred eeccccCCC
Confidence 999888665
No 61
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.37 E-value=1e-11 Score=114.17 Aligned_cols=97 Identities=13% Similarity=0.258 Sum_probs=78.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC--CC-Cc-----eE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA--IP-PA-----DA 261 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~--~~-~~-----D~ 261 (365)
.++.+|||+|||+|..+..|++..+ ..+++++|+ +.+++.+.+ ..+|.++++|+.+. .+ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3557999999999999999999987 689999999 888877754 13466789999873 32 23 34
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+++...+++++++++..+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 5556889999999999999999999999 888876
No 62
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=1.1e-11 Score=104.60 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=83.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D 260 (365)
.+.+.++ .-+..++||+|||.|..+..|+++ +..|+++|. +..++.+.+ .-.|+....|+.+ .++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3555555 445689999999999999999998 789999999 666766553 3458889999987 454 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+|++..|+++++.+...++++++.+.++| ||.+++.....
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~ 136 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFME 136 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB-
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecc
Confidence 99999999999999999999999999999 88877766543
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=2.8e-11 Score=113.31 Aligned_cols=108 Identities=19% Similarity=0.345 Sum_probs=87.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCCCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFEAIP 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~~~ 257 (365)
..+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.+++ ..+++++..|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34566666 33346999999999999999999999999999999 777877764 1378999999987543
Q ss_pred --CceEEEecccccc---CChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 258 --PADAVLIKCVLHN---WNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 258 --~~D~i~~~~vlh~---~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.||+|+++-.+|. +++..+.++|+++++.|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 5999999766553 4566678999999999999 99999874
No 64
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.35 E-value=6.8e-12 Score=106.57 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=99.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCC-eEEEeCCCCC--CCC-CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGN-LKYVGGNMFE--AIP-PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-i~~~~~d~~~--~~~-~~D~i~~~~vl 268 (365)
....+.||.|+|.|..+..++-.. --++..+|. +..++.|++ ..+ .++.+..+.+ |.+ .||+||+.+++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998876543 236778887 888888874 234 3455555554 433 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
-|++|++.+++|++++++|+| +|.|+|=|.+...... .+|- ..+.-.|+.+.|+++|++||+++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~----~DsSvTRs~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDE----EDSSVTRSDEHFRELFKQAGLRL 196 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEET----TTTEEEEEHHHHHHHHHHCT-EE
T ss_pred ccCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCC----ccCeeecCHHHHHHHHHHcCCEE
Confidence 999999999999999999999 8888888887765421 1111 12345689999999999999999
Q ss_pred ceEEEcCCc
Q 017835 349 YKITDVLGV 357 (365)
Q Consensus 349 ~~~~~~~~~ 357 (365)
++.....++
T Consensus 197 v~~~~Q~~f 205 (218)
T PF05891_consen 197 VKEEKQKGF 205 (218)
T ss_dssp EEEEE-TT-
T ss_pred EEeccccCC
Confidence 988777553
No 65
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.35 E-value=1.2e-11 Score=106.52 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=95.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCC--CceEEEeccccccCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh~~~ 272 (365)
++..+|||||||+|.++..+++. ...+++++|+ +.+++.++. .+++++.+|+.+ +++ .||+|++.+++||++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 45679999999999999888765 3568899999 788887763 568888888865 233 499999999999998
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch-----hhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 273 DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT-----ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
++ .++|+++.+.+++ +.+.+ +..........+. .....+........+.+..+.+++.++++++||+
T Consensus 90 d~--~~~l~e~~r~~~~----~ii~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~ 161 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH----AIVSF--PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLR 161 (194)
T ss_pred CH--HHHHHHHHHhCCe----EEEEc--CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCE
Confidence 76 6788888777654 32221 1100000000000 0000000000000123456999999999999999
Q ss_pred cceEEEcC
Q 017835 348 DYKITDVL 355 (365)
Q Consensus 348 ~~~~~~~~ 355 (365)
+++....+
T Consensus 162 v~~~~~~~ 169 (194)
T TIGR02081 162 ILDRAAFD 169 (194)
T ss_pred EEEEEEec
Confidence 98877664
No 66
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.34 E-value=4.2e-11 Score=101.78 Aligned_cols=118 Identities=22% Similarity=0.279 Sum_probs=91.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh 269 (365)
+++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3478999999999999999999999999999999 888887764 3459999999877 323 5999998752
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
. ....+++++++.|+| ||++++++... ...++.++.+..|+++.
T Consensus 122 --~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred --c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence 2 236789999999999 99999875311 23345666677799877
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
+++..
T Consensus 166 ~~~~~ 170 (187)
T PRK00107 166 EVIEL 170 (187)
T ss_pred eeEEE
Confidence 77655
No 67
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.33 E-value=4.9e-11 Score=104.03 Aligned_cols=132 Identities=12% Similarity=0.107 Sum_probs=100.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCCC----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFEA---- 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~~---- 255 (365)
.+..+|||+|||.|..+..|+++ +.+|+++|+ +..++.+.. ..+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 789999999 777776421 35789999999983
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHH
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEK 335 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~ 335 (365)
.+.||+|+-..++|+++.+...+.++.+.++|+| ||+++++....+...... .....+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~g-----------------Pp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAG-----------------PPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCC-----------------CCCCCCHH
Confidence 2358999999999999999999999999999999 887666555443221110 00124889
Q ss_pred HHHHHHHhcCCccceEEE
Q 017835 336 EWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~ 353 (365)
|+.+++.. +|.+..+..
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99998864 266555544
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.33 E-value=2.1e-11 Score=108.14 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=100.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-C--C-CCceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-A--I-PPADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~-~~~D~i~~~~v 267 (365)
..+..+|||||||+|.++..+++. +.+++++|. +.++..+++ ..++++...|+.+ + . ..||+|++.++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 346789999999999999988875 568999998 777776653 3357777777765 2 2 25999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh-ccCccccCHHHHHHHHHhcCC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV-LVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~t~~e~~~ll~~aGf 346 (365)
+++.++. ..+|+++.+.|+| ||.+++..+........................ ....+..+.++|.++++++||
T Consensus 124 l~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 124 LEHVPDP--ASFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 9998876 5789999999999 899887654211100000000000000000000 011234588999999999999
Q ss_pred ccceEEE
Q 017835 347 SDYKITD 353 (365)
Q Consensus 347 ~~~~~~~ 353 (365)
+++....
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9887754
No 69
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.32 E-value=9.6e-12 Score=103.84 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=93.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
-....+++|+|||.|.++..|+.++ -+++++|. +..++.+++ .++|+++..|+-+..| .||+|+++.++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4566899999999999999999986 37899999 888998875 5799999999988555 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 271 WND-EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 271 ~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
+++ ++...+++++.++|+| ||.|++..+.- . ....+ |.....+.+.++|.+. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~rd-~---------~c~~w---------gh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHARD-A---------NCRRW---------GHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-H-H---------HHHHT---------T-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEecC-C---------ccccc---------CcccchHHHHHHHHHH-hhhe
Confidence 986 6778899999999999 89888866521 1 00111 3333567778888876 4444
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
+....
T Consensus 176 ~~~~~ 180 (201)
T PF05401_consen 176 ERVEC 180 (201)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 44333
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.28 E-value=4.9e-11 Score=100.36 Aligned_cols=99 Identities=22% Similarity=0.400 Sum_probs=80.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vlh 269 (365)
....+|||+|||+|..+..+++.+|..+++++|. +.+++.+++ .+.++++..|.+++.+ .||+|++.--+|
T Consensus 30 ~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 30 HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 3678999999999999999999999999999999 888887764 2339999999999665 599999988776
Q ss_pred cCCh---hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 270 NWND---EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 270 ~~~~---~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.-.+ .-..++++.+.+.|+| ||.++++-
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 5443 3468899999999999 89997644
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.27 E-value=4.1e-11 Score=105.60 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=100.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CC-CeEEEeCCCCC-C--C-CCceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NG-NLKYVGGNMFE-A--I-PPADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~i~~~~~d~~~-~--~-~~~D~i~~~~vl 268 (365)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. ++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888764 46999999 777776654 12 58888888765 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhh--hh--hhhc---cCccccCHHHHHHHH
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMD--ML--MMVL---VKGEERNEKEWAKLF 341 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d--~~--~~~~---~~~~~~t~~e~~~ll 341 (365)
|+..+. ..+|++++++|+| ||.+++......... ....... .. .... ...+..+..+|.+++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~---gG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 191 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP---GGILFFSTINRTPKS------YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL 191 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC---CcEEEEEecCCCchH------HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence 999877 5789999999999 899888764321100 0000000 00 0000 112344889999999
Q ss_pred HhcCCccceEEEc
Q 017835 342 FEAGFSDYKITDV 354 (365)
Q Consensus 342 ~~aGf~~~~~~~~ 354 (365)
+++||+++++...
T Consensus 192 ~~~G~~i~~~~~~ 204 (224)
T TIGR01983 192 ESAGLRVKDVKGL 204 (224)
T ss_pred HHcCCeeeeeeeE
Confidence 9999999887643
No 72
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=2.1e-11 Score=103.90 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=107.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC-----CC--CceEEEecc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPH--IECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA-----IP--PADAVLIKC 266 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~-----~~--~~D~i~~~~ 266 (365)
.+||+||||.|....-+++..|+ +++...|. |..++..++ ..++.....|+..+ .+ ..|++++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999888 89999998 888888775 45666666677663 11 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcc---ccCHHHHHHHHHh
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGE---ERNEKEWAKLFFE 343 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~t~~e~~~ll~~ 343 (365)
+|.-++++.-...+++++++||| ||.|++-|....+-.... +. ....++.+......|. ..+.+++++++.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 99999999889999999999999 999999887654422110 10 0112222222222332 2399999999999
Q ss_pred cCCccceE
Q 017835 344 AGFSDYKI 351 (365)
Q Consensus 344 aGf~~~~~ 351 (365)
+||..++.
T Consensus 228 agf~~~~~ 235 (264)
T KOG2361|consen 228 AGFEEVQL 235 (264)
T ss_pred cccchhcc
Confidence 99986543
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.26 E-value=7.6e-11 Score=93.53 Aligned_cols=100 Identities=20% Similarity=0.326 Sum_probs=78.7
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--C-C-CC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--A-I-PP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~-~~ 258 (365)
++..+. ..+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|... + . +.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 334444 45567999999999999999999999999999999 777877653 3578999888764 1 2 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
||+|++....+ ...++++++++.|+| ||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 99999976543 335889999999999 8887763
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.24 E-value=1e-10 Score=108.73 Aligned_cols=107 Identities=18% Similarity=0.305 Sum_probs=85.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC-CceEE
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP-PADAV 262 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-~~D~i 262 (365)
++..++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ .-..+++..|..+..+ .||+|
T Consensus 188 Ll~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 188 LLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 444454 23346899999999999999999999999999999 788887764 2245677888877544 59999
Q ss_pred EeccccccC---ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 263 LIKCVLHNW---NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 263 ~~~~vlh~~---~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+++..+|+. ......++++++.+.|+| ||.++|+-.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 999888863 334568999999999999 999988654
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.23 E-value=2.1e-10 Score=102.88 Aligned_cols=123 Identities=23% Similarity=0.341 Sum_probs=94.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEeccccc-
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVLH- 269 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vlh- 269 (365)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. ..+++++.+|+.++.+ .||+|++.-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456999999999999999999999999999999 888887764 3479999999988654 599999853322
Q ss_pred -----cCChhH------------------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc
Q 017835 270 -----NWNDEE------------------CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL 326 (365)
Q Consensus 270 -----~~~~~~------------------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 326 (365)
.+.... ...+++++.+.|+| ||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC-------------------------
Confidence 222111 23788999999999 888776210
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
....+++.++|+++||+.++++..
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 013467889999999998877665
No 76
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.22 E-value=1.4e-10 Score=96.79 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=98.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCC--CceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh~~ 271 (365)
.+++.+|||+|||.|.++..|.+. .++++.|+|+ +..+..+. ...+.++++|+.+ .+| +||.|+++.+|.+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 467899999999999999888886 5899999998 55555544 5778899999988 355 49999999999998
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh--------------hhhccCccccCHHHH
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML--------------MMVLVKGEERNEKEW 337 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--------------~~~~~~~~~~t~~e~ 337 (365)
..+ .++|+++.|+-+ +.+|.=+ +-+.. ...+.+. ..-..|-+..|..++
T Consensus 89 ~~P--~~vL~EmlRVgr------~~IVsFP---NFg~W------~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 89 RRP--DEVLEEMLRVGR------RAIVSFP---NFGHW------RNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred hHH--HHHHHHHHHhcC------eEEEEec---ChHHH------HHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 887 678888877633 3333211 11100 0000000 000123344599999
Q ss_pred HHHHHhcCCccceEEEcCC
Q 017835 338 AKLFFEAGFSDYKITDVLG 356 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~~~ 356 (365)
.++.++.|+++.+...+.+
T Consensus 152 e~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 152 EDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHHHCCCEEEEEEEEcC
Confidence 9999999999998887754
No 77
>PTZ00146 fibrillarin; Provisional
Probab=99.22 E-value=6.4e-10 Score=99.70 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=91.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HHHhcccCCCeEEEeCCCCCC------CCCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PH----VVADLKSNGNLKYVGGNMFEA------IPPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~~~------~~~~D~i~~~ 265 (365)
+++..+|||+|||+|.++..+++.. +.-+++++|. +. +++.++...+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 6788999999999999999999986 4558999998 44 455555457899999998764 2358999886
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.. .++ +...++.++++.||| ||.++|...........+ ...+=.+|. ++|+++|
T Consensus 210 va---~pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~------------------pe~~f~~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA---QPD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAK------------------PEVVFASEV-QKLKKEG 263 (293)
T ss_pred CC---Ccc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCC------------------HHHHHHHHH-HHHHHcC
Confidence 63 133 335566789999999 899998321111111000 001111445 7889999
Q ss_pred CccceEEEcC
Q 017835 346 FSDYKITDVL 355 (365)
Q Consensus 346 f~~~~~~~~~ 355 (365)
|++++...+.
T Consensus 264 F~~~e~v~L~ 273 (293)
T PTZ00146 264 LKPKEQLTLE 273 (293)
T ss_pred CceEEEEecC
Confidence 9999988885
No 78
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.20 E-value=6.1e-10 Score=99.71 Aligned_cols=124 Identities=22% Similarity=0.259 Sum_probs=91.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---C----CCeEEEeCCCCCCCCCceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---N----GNLKYVGGNMFEAIPPADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~----~~i~~~~~d~~~~~~~~D~i~~~~vlh~ 270 (365)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ . .++.+..+|. .||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 5678999999999999988776543 36999999 888887765 1 2333333321 69999875432
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+....+++++.+.|+| ||++++..... ...+++.+.+++.||++++
T Consensus 190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ---NPLLELAPDLARLLKP---GGRLILSGILE----------------------------EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHHHHHHHHhcCC---CcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEEE
Confidence 2346789999999999 89988864321 0356778899999999999
Q ss_pred EEEcCCceeEEEEe
Q 017835 351 ITDVLGVRSLIEVY 364 (365)
Q Consensus 351 ~~~~~~~~~vi~~~ 364 (365)
+....++.+++--+
T Consensus 236 ~~~~~~W~~~~~~~ 249 (250)
T PRK00517 236 VLERGEWVALVGKK 249 (250)
T ss_pred EEEeCCEEEEEEEe
Confidence 98888887776544
No 79
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=7.7e-10 Score=100.60 Aligned_cols=135 Identities=21% Similarity=0.361 Sum_probs=98.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vl 268 (365)
..+..+|||+|||+|..+..++..+|..+++++|. +.+++.+++ ..++.++.+|++++.+ .||+|++.-..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 35667999999999999999999999999999999 777777764 3589999999988654 59999985222
Q ss_pred c------cCCh------------------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh
Q 017835 269 H------NWND------------------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM 324 (365)
Q Consensus 269 h------~~~~------------------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 324 (365)
. ...+ +....+++++.+.|+| ||.+++ +. +.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g~---------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----GY---------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----Cc----------------
Confidence 1 1111 1235788899999999 888776 22 00
Q ss_pred hccCccccCHHHHHHHHHhcCCccceEEE-cCCceeEEEEe
Q 017835 325 VLVKGEERNEKEWAKLFFEAGFSDYKITD-VLGVRSLIEVY 364 (365)
Q Consensus 325 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~ 364 (365)
...+++.+++++.||+.++++. ..+...++.++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0235688899999998766643 34555555554
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.17 E-value=1.1e-10 Score=100.91 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=77.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCC-CC-C--CC--CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNM-FE-A--IP--PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~-~~-~--~~--~~D~i~~~~ 266 (365)
+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 578999999999999999999999999999999 888887764 36799999998 33 2 43 499999865
Q ss_pred ccccCC------hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWN------DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
...... ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 432111 11136789999999999 89998864
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=99.16 E-value=2.3e-09 Score=91.61 Aligned_cols=134 Identities=18% Similarity=0.267 Sum_probs=96.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCC-eEEEeCCCCCCCC--CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGN-LKYVGGNMFEAIP--PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~-i~~~~~d~~~~~~--~~D~i~~~~v 267 (365)
.++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++ .++ +.++.+|+.++++ .||+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 56679999999999999999988 689999999 788877753 122 8899999988654 4999998655
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccC
Q 017835 268 LHNWN-------------------DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK 328 (365)
Q Consensus 268 lh~~~-------------------~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 328 (365)
++... ......+++++.++|+| ||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence 43211 12245689999999999 88887754210
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEcCCc---eeEEEEeC
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDVLGV---RSLIEVYP 365 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~---~~vi~~~~ 365 (365)
...+++.++++++||++..+...... ..+++.+|
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 13456788999999998776554322 44555543
No 82
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=1.1e-09 Score=95.27 Aligned_cols=101 Identities=8% Similarity=0.047 Sum_probs=86.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCC-CC--
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFE-AI-- 256 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~-- 256 (365)
.++.+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..+|++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999998 778999999 777776421 4589999999998 32
Q ss_pred ---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 257 ---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 257 ---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
..||+|+-..++++++++...+..+.+.++|+| ||+++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence 259999999999999999999999999999999 999998876543
No 83
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.1e-09 Score=95.88 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=87.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~ 259 (365)
+.+++.++ .....+|||+|||.|.+++.+++.+|+.+++.+|. ...++.+++ .++..+...|..++.. .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 55677787 55555999999999999999999999999999999 666777664 2333567778888765 59
Q ss_pred eEEEeccccccC---ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 260 DAVLIKCVLHNW---NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 260 D~i~~~~vlh~~---~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|.|+++--+|.= .+.-+.++++...+.|++ ||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 999999988842 234456999999999999 999998765
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=4.7e-10 Score=97.31 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=76.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--- 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--- 257 (365)
+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|. +.+++.+++ ..+++++.+|+.+..+
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344444 56778999999999999999988764 568999999 888877764 2468999999987432
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.||+|++..++++++ +++.+.|+| ||+|++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 599999998887655 357788999 8998774
No 85
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.13 E-value=3.8e-10 Score=93.91 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=88.4
Q ss_pred EEeec-hHHHHhccc---------CCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCc
Q 017835 228 TVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAG 294 (365)
Q Consensus 228 ~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG 294 (365)
+++|. +.|++.|++ ..+++++.+|+.+ +++ .||+|++..++|++++. .+.|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 47888 889988753 2369999999987 655 49999999999999876 7899999999999 99
Q ss_pred EEEEEeeecCCCccCccchhhhhhhhhhhhh---c-cC-----------ccccCHHHHHHHHHhcCCccceEEEcCCc-e
Q 017835 295 KVIIIDIKMESEKADYKTTETQLFMDMLMMV---L-VK-----------GEERNEKEWAKLFFEAGFSDYKITDVLGV-R 358 (365)
Q Consensus 295 ~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---~-~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~ 358 (365)
++++.|...++...... ....+....... . .. ....+.+++.++|+++||+.++....... .
T Consensus 76 ~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 76 RVSILDFNKSNQSVTTF--MQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEEEEECCCCChHHHHH--HHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 99999987654321100 000000000000 0 00 12348899999999999999988777543 4
Q ss_pred eEE
Q 017835 359 SLI 361 (365)
Q Consensus 359 ~vi 361 (365)
.+.
T Consensus 154 ~~~ 156 (160)
T PLN02232 154 GNL 156 (160)
T ss_pred Hee
Confidence 443
No 86
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.11 E-value=9.9e-10 Score=95.64 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=100.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCC-CCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFE-AIP 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~~ 257 (365)
..+..+||..|||.|.-+..|+++ +.+++|+|+ +..++.+.+ ..+|++.++|+++ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 466789999999999999999998 689999999 777777621 4578999999999 222
Q ss_pred ---CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCcc-CccchhhhhhhhhhhhhccCccccC
Q 017835 258 ---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA-DYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 258 ---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
.||+|+=...|+-++++...+..+.+.++|+| ||+++++....+.... .+|+ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 59999999999999999999999999999999 8996665554433221 1111 127
Q ss_pred HHHHHHHHHhcCCccceEEE
Q 017835 334 EKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~ 353 (365)
.+|+.++|. .+|++.....
T Consensus 172 ~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEec
Confidence 889999988 7888776654
No 87
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.11 E-value=1.7e-09 Score=94.48 Aligned_cols=125 Identities=11% Similarity=0.183 Sum_probs=97.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---CC--CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---IP--PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~~--~~D~i~~ 264 (365)
.....+|||+|||+|..+..++++++.++++++|+ +.+.+.|++ .+||++++.|+.+- .+ .||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34489999999999999999999999999999999 888888775 68999999999882 22 4999999
Q ss_pred ccccccCCh----------------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccC
Q 017835 265 KCVLHNWND----------------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK 328 (365)
Q Consensus 265 ~~vlh~~~~----------------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 328 (365)
+--.+.-.. -....+++.+++.||| ||++.++-.. +
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~--e----------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP--E----------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH--H-----------------------
Confidence 754432221 1246788999999999 8999886531 0
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEc
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
...||.+++.+.+|...++..+
T Consensus 174 ----rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 ----RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred ----HHHHHHHHHHhcCCCceEEEEe
Confidence 3457788888888887766555
No 88
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.10 E-value=2.4e-09 Score=97.49 Aligned_cols=97 Identities=22% Similarity=0.399 Sum_probs=75.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEeccc-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKCV- 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~v- 267 (365)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|++.--
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 3457999999999999999999999999999999 888888774 3579999999987654 4999998511
Q ss_pred ------------cccCCh----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 268 ------------LHNWND----------EECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 268 ------------lh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+++.+. +....+++++.+.|+| ||++++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 111111 1236789999999999 787664
No 89
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.10 E-value=4.6e-09 Score=98.70 Aligned_cols=134 Identities=16% Similarity=0.250 Sum_probs=95.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC-CC---CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA-IP---PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~-~~---~~D~i~~~~vl 268 (365)
.+..+|||+|||+|.++..++..+|+.+++++|. +.+++.+++ ..+++++.+|++++ .+ .||+|+++-.-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3456999999999999999999999999999999 888888875 34799999999763 22 49999995421
Q ss_pred ccCC---------------------h--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 269 HNWN---------------------D--EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 269 h~~~---------------------~--~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
..-. + +...++++.+.+.|+| ||.++ +|.-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG~~--------------------- 384 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHGFD--------------------- 384 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEECcc---------------------
Confidence 1000 0 1124677777889998 77755 443110
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEEe
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEVY 364 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 364 (365)
..+++.+++++.||+.+++..- .+...++.++
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 2456788889999987776554 4555555443
No 90
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.09 E-value=5.9e-10 Score=95.85 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=76.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C---CC--CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A---IP--PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~---~~--~~D~i~~~~ 266 (365)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+ + .+ .+|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999999999999999999 878877653 3589999999975 1 33 488888765
Q ss_pred ccccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWNDEE-------CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..+ |+... ...++++++++|+| ||.|++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 432 32211 14689999999999 89988765
No 91
>PHA03411 putative methyltransferase; Provisional
Probab=99.09 E-value=2.1e-09 Score=95.32 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=91.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCC-C-CceEEEeccccccCChhH
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAI-P-PADAVLIKCVLHNWNDEE 275 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~-~-~~D~i~~~~vlh~~~~~~ 275 (365)
...+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++ ..+++++.+|+.+.. . .||+|++.-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 356999999999999999988887789999999 888888876 468999999998833 2 599999988887764432
Q ss_pred H------------------HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 276 C------------------VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 276 ~------------------~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
. .+.++.....|+| +|.+++. ++.. + ++ ....+.+++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~---yss~---~-------~y---------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA---YSGR---P-------YY---------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE---Eecc---c-------cc---------cccCCHHHH
Confidence 1 3456666778888 6766555 1110 0 11 112378899
Q ss_pred HHHHHhcCCc
Q 017835 338 AKLFFEAGFS 347 (365)
Q Consensus 338 ~~ll~~aGf~ 347 (365)
+++++++||.
T Consensus 199 ~~~l~~~g~~ 208 (279)
T PHA03411 199 LKWSKQTGLV 208 (279)
T ss_pred HHHHHhcCcE
Confidence 9999999985
No 92
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.09 E-value=4.6e-09 Score=95.79 Aligned_cols=96 Identities=22% Similarity=0.382 Sum_probs=75.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEec------
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIK------ 265 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~------ 265 (365)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 888887774 2469999999998665 59999985
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 -------CVLHNWND----------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 -------~vlh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+++|-|. .....+++++.+.|+| ||.++ +|.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~-~e~ 244 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLV-CEI 244 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEE-EEE
Confidence 23332221 1356789999999999 77654 443
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.08 E-value=1.4e-09 Score=94.77 Aligned_cols=100 Identities=14% Similarity=0.216 Sum_probs=77.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI--- 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--- 256 (365)
..+++.++ ..++.+|||||||+|..+..+++.. ++.+++++|. +.+++.+++ ..+++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 33455555 6788999999999999999888875 4579999999 888887764 357999999988732
Q ss_pred CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 257 PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 257 ~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..||+|++....++++ +.+.+.|+| ||++++..
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~~ 176 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIPV 176 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEEE
Confidence 2599999987765443 356678999 99988853
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.06 E-value=4e-09 Score=91.02 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=76.0
Q ss_pred hhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CC-CC
Q 017835 192 HKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AI-PP 258 (365)
Q Consensus 192 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~-~~ 258 (365)
..+. ..++.+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .++++++.+|+.+ .. +.
T Consensus 34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3444 6778899999999999999998764 6679999999 888887653 3678999999876 22 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
||.|++... ......+++.+.+.|+| ||++++
T Consensus 112 ~D~V~~~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 112 FDRIFIGGG-----SEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCEEEECCC-----cccHHHHHHHHHHHcCC---CcEEEE
Confidence 999998532 22346789999999999 888875
No 95
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.05 E-value=9.6e-10 Score=99.74 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=73.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC---CeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH---IECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~ 270 (365)
....+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..++++..+|..+ |++ .||+|++...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 34578999999999999999988764 37899999 888888875 5778999999887 655 4999987543
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+ ..+++++++|+| ||+++++.+
T Consensus 161 -~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 -P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred -C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236789999999 999998764
No 96
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.05 E-value=4.5e-09 Score=96.60 Aligned_cols=94 Identities=20% Similarity=0.375 Sum_probs=75.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEeccc----
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKCV---- 267 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~v---- 267 (365)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|++.--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888888774 3579999999987554 5999998511
Q ss_pred ---------cccCCh----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 268 ---------LHNWND----------EECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 268 ---------lh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+++.+. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 122121 2236889999999999 787765
No 97
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.05 E-value=3.6e-09 Score=91.91 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=78.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCCC---------CC--
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA---------IP-- 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~-- 257 (365)
+.+.+. .++++.+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ .+
T Consensus 42 ~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 42 IQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 344443 24677899999999999999999986 45799999995532 235699999999883 22
Q ss_pred CceEEEeccccccCChhH---------HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEE---------CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~---------~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+|+|++..+.+....+. ...+|+++.++|+| ||.+++..+
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~ 166 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF 166 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence 499999977665443221 24689999999999 899988654
No 98
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.04 E-value=2.6e-09 Score=93.46 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=76.5
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---P 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~ 257 (365)
.+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|. +.+++.+++ ..+++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444455 67789999999999999999998864 567999998 888887764 357999999998732 2
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.||+|++.....+. .+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 59999988765443 3457788999 8998874
No 99
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.03 E-value=3.6e-09 Score=87.79 Aligned_cols=100 Identities=23% Similarity=0.310 Sum_probs=82.2
Q ss_pred HhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---CCCce
Q 017835 191 IHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---IPPAD 260 (365)
Q Consensus 191 ~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~~~~D 260 (365)
+.++. ..++.+++|||||+|..+..++..+|..+++.+|. ++.++..++ .++++++.+|.-+. .+.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 34444 68889999999999999999999999999999998 766666553 78999999998773 34699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.|++...- ....+|+.+...|+| ||+|++.-.
T Consensus 105 aiFIGGg~------~i~~ile~~~~~l~~---ggrlV~nai 136 (187)
T COG2242 105 AIFIGGGG------NIEEILEAAWERLKP---GGRLVANAI 136 (187)
T ss_pred EEEECCCC------CHHHHHHHHHHHcCc---CCeEEEEee
Confidence 99997752 346789999999999 888887543
No 100
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=88.84 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=95.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC--C-CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI--P-PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~--~-~~D~i~~~~v 267 (365)
+...+|||+|||.|.++..|++..=.-..+++|. +..++.|+. ++.|+|++.|+.+|. + .||+|+-..+
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 3444999999999999999999843335789998 777766653 455999999999952 3 4999987766
Q ss_pred cccCC------hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 268 LHNWN------DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 268 lh~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
+.-++ .......+..+.+.|+| ||+++|.... .|.+|+.+.+
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f 193 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEF 193 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHH
Confidence 54332 22235678888899999 8888885431 2789999999
Q ss_pred HhcCCccceEEEcCC
Q 017835 342 FEAGFSDYKITDVLG 356 (365)
Q Consensus 342 ~~aGf~~~~~~~~~~ 356 (365)
+.-||......+.|.
T Consensus 194 ~~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 194 ENFNFEYLSTVPTPT 208 (227)
T ss_pred hcCCeEEEEeeccce
Confidence 999999888888763
No 101
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.00 E-value=3.7e-09 Score=98.69 Aligned_cols=106 Identities=12% Similarity=0.198 Sum_probs=80.8
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CCC--
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AIP-- 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~~-- 257 (365)
+++.+. ......+||||||+|.++..++..+|+..++|+|+ +.++..+.+ ..++.++.+|+.. .++
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 34567999999999999999999999999999999 777776653 4689999999854 344
Q ss_pred CceEEEeccccccCChhH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEE-----CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~-----~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+|.|+++... .|+... ...+|+.++++|+| ||.+.+...
T Consensus 192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 49999875432 243221 15789999999999 899888653
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.99 E-value=5.1e-09 Score=90.24 Aligned_cols=101 Identities=23% Similarity=0.349 Sum_probs=77.7
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CC-CC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AI-PP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~-~~ 258 (365)
++..+. ..++.+|||+|||+|.++..+++..|+.+++++|. +.+++.+++ ..+++++.+|+.+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344444 56778999999999999999998888899999999 888887764 3579999998865 22 24
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+|.+++.. . .....+++++.+.|+| ||++++...
T Consensus 110 ~d~v~~~~-----~-~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG-----G-RPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCEEEEEC-----C-cCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 67665421 1 2346889999999999 899888764
No 103
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.98 E-value=1.3e-08 Score=99.73 Aligned_cols=132 Identities=19% Similarity=0.358 Sum_probs=95.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEecc--c
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKC--V 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~--v 267 (365)
+..+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++- +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 888888774 3579999999987554 599999842 1
Q ss_pred ------------cccCCh----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 268 ------------LHNWND----------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 268 ------------lh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
+.+.+. +....+++++.+.|+| ||.+++ |.-.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~---------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF---------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC----------------------
Confidence 111110 1234678888999999 887765 4211
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEE
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEV 363 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~ 363 (365)
...+++.+++.+.||..+++..- .+...++.+
T Consensus 272 ------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 ------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 02456788888899987776554 454444443
No 104
>PRK04457 spermidine synthase; Provisional
Probab=98.98 E-value=2.5e-09 Score=96.15 Aligned_cols=97 Identities=19% Similarity=0.344 Sum_probs=77.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CCC-CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AIP-PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~~-~~D~i~~~~ 266 (365)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567999999999999999999999999999999 999988874 3689999999865 233 599998753
Q ss_pred ccc--cCChh-HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 267 VLH--NWNDE-ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 267 vlh--~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+ ..+.. ...++++++++.|+| ||++++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 22 12211 126899999999999 8888874
No 105
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.98 E-value=9.9e-09 Score=93.74 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=84.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC-CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh 269 (365)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..++.+...+.....+ .||+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 45689999999999999888765 3458999999 788887764 3456666666433223 699999865432
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
....++.++.+.|+| ||.+++...... ..+++.+.+++. |+++
T Consensus 237 -----~l~~ll~~~~~~Lkp---gG~li~sgi~~~----------------------------~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKP---GGWLILSGILET----------------------------QAQSVCDAYEQG-FTVV 279 (288)
T ss_pred -----HHHHHHHHHHHHcCC---CcEEEEEeCcHh----------------------------HHHHHHHHHHcc-Ccee
Confidence 346789999999999 899888653210 235566666665 8777
Q ss_pred eEEEcC
Q 017835 350 KITDVL 355 (365)
Q Consensus 350 ~~~~~~ 355 (365)
++....
T Consensus 280 ~~~~~~ 285 (288)
T TIGR00406 280 EIRQRE 285 (288)
T ss_pred eEeccC
Confidence 665544
No 106
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.98 E-value=3.1e-09 Score=83.44 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=75.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C--CC--CceEEEeccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A--IP--PADAVLIKCV 267 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~~--~~D~i~~~~v 267 (365)
+.+|||+|||+|.++..+++.. ..+++++|+ +..++.++. ..+++++.+|+.+ . .+ .||+|+++-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 3589999999999999999998 789999999 888787764 4689999999987 2 33 5999999866
Q ss_pred cccCC------hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWN------DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.+... .+....+++++.+.|+| ||.++++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 65332 12346889999999999 89888764
No 107
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.97 E-value=1.1e-08 Score=90.19 Aligned_cols=155 Identities=16% Similarity=0.238 Sum_probs=111.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC------CCCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH--IECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA------IPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~------~~~~D~i 262 (365)
...-+||||.||.|.+....+..+|. .++...|. +..++..++ .+-++|..+|.++. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35689999999999999999999997 68888898 766776553 34459999999983 3468999
Q ss_pred EeccccccCChhH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc-----cccCHHH
Q 017835 263 LIKCVLHNWNDEE-CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG-----EERNEKE 336 (365)
Q Consensus 263 ~~~~vlh~~~~~~-~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~t~~e 336 (365)
+.+.+...++|.+ +...|+-+++++.| ||.|+....-+..+ .+.....+ ...-+| +.||..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQ-----le~IAr~L----tsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQ-----LEMIARVL----TSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcc-----hHHHHHHH----hcccCCCceEEEecCHHH
Confidence 9999999999976 45579999999999 78777654322211 11111111 000011 3479999
Q ss_pred HHHHHHhcCCccceE-EEcCCceeEEEEeC
Q 017835 337 WAKLFFEAGFSDYKI-TDVLGVRSLIEVYP 365 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~-~~~~~~~~vi~~~~ 365 (365)
+.++++.+||+.++. +..-|.++|-.|++
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999999986644 33356677776654
No 108
>PRK14967 putative methyltransferase; Provisional
Probab=98.96 E-value=2.4e-08 Score=87.92 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=75.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh 269 (365)
..++.+|||+|||+|.++..+++. +..+++++|. +.+++.+++ ..+++++.+|+.+..+ .||+|++.-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 456689999999999999998876 3348999999 777776654 2368889999877443 599999864322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 270 NWND-------------------EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 270 ~~~~-------------------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.-+. .....+++++.+.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1111 1135688899999999 99999865443
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.96 E-value=6.8e-09 Score=78.69 Aligned_cols=92 Identities=24% Similarity=0.364 Sum_probs=75.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc------cCCCeEEEeCCCCCCC----CCceEEEeccccccC
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK------SNGNLKYVGGNMFEAI----PPADAVLIKCVLHNW 271 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~i~~~~~d~~~~~----~~~D~i~~~~vlh~~ 271 (365)
+|+|+|||.|..+..+++ .+..+++++|. +.....++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67789999998 66666554 1568899999998832 259999999999875
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+....+++++.+.++| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 44558899999999999 8888765
No 110
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=7.1e-09 Score=88.54 Aligned_cols=110 Identities=16% Similarity=0.316 Sum_probs=80.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------------------
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------------- 241 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------- 241 (365)
+..++.++..+-....+|||||.+|.++..+++.|....+.|+|+ +..+..|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334455543345678999999999999999999998888999999 777887763
Q ss_pred -----------------------CCCeEEEeCCCCC-CCCCceEEEec----cccccCChhHHHHHHHHHHHhcccCCCC
Q 017835 242 -----------------------NGNLKYVGGNMFE-AIPPADAVLIK----CVLHNWNDEECVKILKNCKKAIAINGKA 293 (365)
Q Consensus 242 -----------------------~~~i~~~~~d~~~-~~~~~D~i~~~----~vlh~~~~~~~~~~L~~i~~~L~p~~~g 293 (365)
..+..+...||.. ..+.||+|+|- +|=-+|.|+-...+|++|++.|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 0122233334443 24569999874 333468899999999999999999 5
Q ss_pred cEEEEEee
Q 017835 294 GKVIIIDI 301 (365)
Q Consensus 294 G~lli~e~ 301 (365)
| ++|+|+
T Consensus 203 G-iLvvEP 209 (288)
T KOG2899|consen 203 G-ILVVEP 209 (288)
T ss_pred c-EEEEcC
Confidence 4 555664
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.6e-08 Score=89.48 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=91.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeE----EEeCCCCC-CC-CCceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLK----YVGGNMFE-AI-PPADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~----~~~~d~~~-~~-~~~D~i~~~~v 267 (365)
..++.++||+|||+|-++++.++.. -.+++++|+ |..++.+++ .+.+. ....+... +. ..||+|+++=
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI- 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI- 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence 3688999999999999999988874 346999999 777777764 33333 33333333 22 2599998854
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
| .+ -..++...+.+.++| ||++++.-. +.+ ..+...+.++++||.
T Consensus 238 L---A~-vl~~La~~~~~~lkp---gg~lIlSGI-l~~---------------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 238 L---AE-VLVELAPDIKRLLKP---GGRLILSGI-LED---------------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred h---HH-HHHHHHHHHHHHcCC---CceEEEEee-hHh---------------------------HHHHHHHHHHhCCCe
Confidence 3 22 236888899999999 888877442 111 245678888999999
Q ss_pred cceEEEcCCceeEE
Q 017835 348 DYKITDVLGVRSLI 361 (365)
Q Consensus 348 ~~~~~~~~~~~~vi 361 (365)
++++....++.++.
T Consensus 283 v~~~~~~~eW~~i~ 296 (300)
T COG2264 283 VVEVLEREEWVAIV 296 (300)
T ss_pred EeEEEecCCEEEEE
Confidence 99998888877764
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.90 E-value=4.2e-08 Score=87.65 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=87.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCCCC-----CCceEEEeccccc--
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFEAI-----PPADAVLIKCVLH-- 269 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~~~-----~~~D~i~~~~vlh-- 269 (365)
..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+++.. ..||+|++.--..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888888775 234688999988743 2499999863221
Q ss_pred ----cCChh------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc
Q 017835 270 ----NWNDE------------------ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV 327 (365)
Q Consensus 270 ----~~~~~------------------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (365)
..+++ ....+++.+.+.|+| ||++++.-. . +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~~-~-~---------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVETS-E-R---------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-c-c----------------------
Confidence 11111 124788888899999 888775321 0 0
Q ss_pred CccccCHHHHHHHHHhcCCccceEEEc
Q 017835 328 KGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 328 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..+++.+++++.||+.....+-
T Consensus 220 -----~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 220 -----QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred -----hHHHHHHHHHHCCCCceeeEcc
Confidence 2346678888899986544433
No 113
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.89 E-value=5.8e-08 Score=81.92 Aligned_cols=160 Identities=17% Similarity=0.219 Sum_probs=96.0
Q ss_pred hhHHHhhCchHHHHHHHHhhcCcc----cchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH
Q 017835 161 FWDYAVRETRLNHFFNEGMASDTR----LTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVV 236 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 236 (365)
-++.+..+|+....|++..+.... ...+.+++.+. ..++...|.|+|||.+.++..+.+ ..++.-+|+-..
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~- 104 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP- 104 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S-
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-
Confidence 356667778777777766655432 22344555554 124457999999999999866542 357888887221
Q ss_pred HhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch
Q 017835 237 ADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT 313 (365)
Q Consensus 237 ~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~ 313 (365)
.++ ++..|+.. |.+ ..|+++++..|- .. ....+|+++.|+||| ||.|.|.|...
T Consensus 105 -----n~~--Vtacdia~vPL~~~svDv~VfcLSLM--GT-n~~~fi~EA~RvLK~---~G~L~IAEV~S---------- 161 (219)
T PF05148_consen 105 -----NPR--VTACDIANVPLEDESVDVAVFCLSLM--GT-NWPDFIREANRVLKP---GGILKIAEVKS---------- 161 (219)
T ss_dssp -----STT--EEES-TTS-S--TT-EEEEEEES-----SS--HHHHHHHHHHHEEE---EEEEEEEEEGG----------
T ss_pred -----CCC--EEEecCccCcCCCCceeEEEEEhhhh--CC-CcHHHHHHHHheecc---CcEEEEEEecc----------
Confidence 233 56789976 766 499999988873 33 347899999999999 99999998632
Q ss_pred hhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 314 ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 314 ~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
++ -..+++.+.++..||+....-.......+.+++
T Consensus 162 ---Rf-------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 162 ---RF-------------ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp ---G--------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred ---cC-------------cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 11 145778888999999988765445555565554
No 114
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.89 E-value=3.3e-08 Score=89.60 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=87.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~vlh 269 (365)
.++.+|||||||||-+++..++.. ..+++++|+ |..++.+++ ..++.+. ...+ ....||+|+++-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~-- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANIL-- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES---
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCC--
Confidence 566899999999999999888764 347999999 777777764 4566553 1111 2246999987432
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
.+....++..+.+.|+| ||.+++.-... + ..+++.+.+++ ||++.
T Consensus 235 ---~~vL~~l~~~~~~~l~~---~G~lIlSGIl~-~---------------------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 235 ---ADVLLELAPDIASLLKP---GGYLILSGILE-E---------------------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp ---HHHHHHHHHHCHHHEEE---EEEEEEEEEEG-G---------------------------GHHHHHHHHHT-TEEEE
T ss_pred ---HHHHHHHHHHHHHhhCC---CCEEEEccccH-H---------------------------HHHHHHHHHHC-CCEEE
Confidence 23457788899999999 77777744321 1 24566778877 99999
Q ss_pred eEEEcCCceeEEEE
Q 017835 350 KITDVLGVRSLIEV 363 (365)
Q Consensus 350 ~~~~~~~~~~vi~~ 363 (365)
+.....++.+++-=
T Consensus 280 ~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 280 EEREEGEWVALVFK 293 (295)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEEEE
Confidence 99988888777543
No 115
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.2e-08 Score=85.90 Aligned_cols=104 Identities=16% Similarity=0.301 Sum_probs=87.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-IP 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~~ 257 (365)
..++.... +.++.+|+|.|.|+|.++..|+.. .|..+++.+|. +...+.|.+ .+++++..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 44666677 899999999999999999999974 68789999998 888887775 56799999999884 33
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.+|.+++ +++++ .+.+.+++++|+| ||.+.++.+..
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkp---gg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKP---GGVVVVYSPTV 198 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCC---CcEEEEEcCCH
Confidence 5999988 67887 7899999999999 99999987654
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.88 E-value=3.3e-08 Score=92.11 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=88.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
.+++.+|||+|||+|.++..++.. +.+++++|. +.++..++. ...+.+..+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567789999999999999887654 678999999 888876653 2347889999987 543 5999999532
Q ss_pred cc-------cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 268 LH-------NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 268 lh-------~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
.. +...+...++|+++++.|+| ||++++.-+. ..+|.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~-------------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT-------------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC-------------------------------CCCHHHH
Confidence 21 11123347899999999999 8998876431 1134567
Q ss_pred HHhcCCccceEEEc
Q 017835 341 FFEAGFSDYKITDV 354 (365)
Q Consensus 341 l~~aGf~~~~~~~~ 354 (365)
++++|| ++..+..
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 889999 8777665
No 117
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=8.8e-08 Score=86.79 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=92.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-CceEEEec--ccccc--
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PADAVLIK--CVLHN-- 270 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~D~i~~~--~vlh~-- 270 (365)
+|||+|||+|..++.++..+|+++++++|+ +..++.|+. ..++.++.+|.+++.+ .||+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888888875 2566677779999766 69999985 22221
Q ss_pred -CC------------------hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccc
Q 017835 271 -WN------------------DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEE 331 (365)
Q Consensus 271 -~~------------------~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 331 (365)
.. -+...+++.++.+.|+| || ++++|.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g-~l~le~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GG-VLILEIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---Cc-EEEEEECCC---------------------------
Confidence 10 12345778888889998 44 444443211
Q ss_pred cCHHHHHHHHHhcC-CccceEEEc-CCceeEEEE
Q 017835 332 RNEKEWAKLFFEAG-FSDYKITDV-LGVRSLIEV 363 (365)
Q Consensus 332 ~t~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi~~ 363 (365)
..+++.+++.+.| |..+.+..- .+...++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 3567789999999 665666555 344444443
No 118
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.85 E-value=3.3e-08 Score=86.27 Aligned_cols=96 Identities=13% Similarity=0.197 Sum_probs=73.3
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---CCc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---PPA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~~~ 259 (365)
++..+. ..+..+|||||||+|..+..+++.. .+++++|. +.+++.+++ ..+++++.+|..+.. ..|
T Consensus 70 l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 70 MTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 344444 5678899999999999998877774 37999998 777777764 346999999987743 259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
|+|++...++++ .+.+.+.|+| ||++++.-
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence 999998776544 3456788999 89888754
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.85 E-value=2.1e-08 Score=85.84 Aligned_cols=95 Identities=14% Similarity=0.277 Sum_probs=71.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCCC---------CC--CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA---------IP--PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~--~~D~i~~~ 265 (365)
..++.+|||+|||+|.++..+++.+ +..+++++|+.+.. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4678899999999999999998886 56789999994433 245788888898762 23 49999985
Q ss_pred cccc---cCC------hhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 266 CVLH---NWN------DEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 266 ~vlh---~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
...| .|. .+...++|+++++.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4322 121 12236789999999999 8988875
No 120
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.85 E-value=6.2e-09 Score=88.15 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=97.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCe-EEEeC---CCCC--CCCCceE
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNL-KYVGG---NMFE--AIPPADA 261 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i-~~~~~---d~~~--~~~~~D~ 261 (365)
+++...+ ..+..++||+|||||..+..|... --+.+++|+ ..|++++.+..-. ++.+. +|.. ....+|+
T Consensus 116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHhcc--CCccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 3444444 445899999999999999998877 346899999 8899998752111 11111 2333 2336999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
|+...||-++..- ..++.-+...|+| ||-+.+.-...++..... +.+..++ ..+..-+++++
T Consensus 192 i~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f~-l~ps~Ry------------AH~~~YVr~~l 253 (287)
T COG4976 192 IVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDDGGFV-LGPSQRY------------AHSESYVRALL 253 (287)
T ss_pred hhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCCCCee-cchhhhh------------ccchHHHHHHH
Confidence 9999999888765 5788999999999 787777544444332110 0000000 12566678999
Q ss_pred HhcCCccceEEEc
Q 017835 342 FEAGFSDYKITDV 354 (365)
Q Consensus 342 ~~aGf~~~~~~~~ 354 (365)
+..||+++++.++
T Consensus 254 ~~~Gl~~i~~~~t 266 (287)
T COG4976 254 AASGLEVIAIEDT 266 (287)
T ss_pred HhcCceEEEeecc
Confidence 9999999988776
No 121
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.82 E-value=2.8e-08 Score=84.96 Aligned_cols=97 Identities=14% Similarity=0.266 Sum_probs=70.0
Q ss_pred CCCeEEEecCCccH--HHHH--HHHH----CC-CCeEEEeec-hHHHHhccc----------------------------
Q 017835 200 GLNTLVDVGGGTGT--LASA--IAKK----FP-HIECTVFDQ-PHVVADLKS---------------------------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~--~~~~--l~~~----~p-~~~~~~~D~-~~~~~~a~~---------------------------- 241 (365)
+..+|...||++|. ++++ +.+. .+ ..++.+.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999994 3333 3331 12 468899999 888888862
Q ss_pred ------CCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 242 ------NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 242 ------~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
..+|+|...|+.+ +.+ .+|+|+|.+||-+++++...++++++++.|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3589999999999 322 59999999999999999999999999999999 8888774
No 122
>PRK00811 spermidine synthase; Provisional
Probab=98.81 E-value=2.9e-08 Score=90.30 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCC--C--CCCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFE--A--IPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~--~--~~~~D~i 262 (365)
++..+||+||||.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4568999999999999999997655568999999 888888774 4689999999876 2 2259999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++...-+..+.. -..++++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 986443322221 136789999999999 8877753
No 123
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.81 E-value=6.5e-08 Score=84.42 Aligned_cols=146 Identities=16% Similarity=0.219 Sum_probs=93.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC-CceEEEeccccccCChhHHH
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP-PADAVLIKCVLHNWNDEECV 277 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~-~~D~i~~~~vlh~~~~~~~~ 277 (365)
...++||||.|-|..+..++..+.+ +...+. +.|....++ ..++++..|-....+ .||+|.|.++|....+| .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4679999999999999999999876 555555 777776664 445555443333223 69999999999888888 7
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcccc--CHHHHHHHHHhcCCccceEEEcC
Q 017835 278 KILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEER--NEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 278 ~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
.+|+.++++|+| +|++++.=...-.+..+. .. .............|..+ ....+.+.|+.+||+++++...|
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~pyVE~--~~-g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRPYVEF--GG-GKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccccEEc--CC-CCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 899999999999 788776543221111100 00 00000000001122211 22334488999999999999886
Q ss_pred C
Q 017835 356 G 356 (365)
Q Consensus 356 ~ 356 (365)
.
T Consensus 243 Y 243 (265)
T PF05219_consen 243 Y 243 (265)
T ss_pred c
Confidence 3
No 124
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.77 E-value=1.4e-07 Score=85.29 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCeEEEecCCccH--HHHH--HHHHCC----CCeEEEeec-hHHHHhccc------------------------------
Q 017835 201 LNTLVDVGGGTGT--LASA--IAKKFP----HIECTVFDQ-PHVVADLKS------------------------------ 241 (365)
Q Consensus 201 ~~~iLDiG~G~G~--~~~~--l~~~~p----~~~~~~~D~-~~~~~~a~~------------------------------ 241 (365)
..+|...||++|. ++++ +.+..+ +.++++.|+ +.+++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999994 3333 334332 467999999 888887763
Q ss_pred -------CCCeEEEeCCCCC-CCC---CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 242 -------NGNLKYVGGNMFE-AIP---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 242 -------~~~i~~~~~d~~~-~~~---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
..+|+|...|+.+ ++| .||+|+|.+++.|++++...+++++++++|+| ||.|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 1467899999998 433 59999999999999999899999999999999 8877663
No 125
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.74 E-value=4e-09 Score=68.66 Aligned_cols=49 Identities=45% Similarity=0.868 Sum_probs=42.4
Q ss_pred HHHHHHHHcCcccccccCC-CCCCHHHHHHHcC-CCCCCcchHHHHHHHHH
Q 017835 34 MSLKCAIQLGIPDIIHNHA-KPMTLNQLLTTLQ-IHPTKTQCVYHLMRILV 82 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~-~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~ 82 (365)
.+|++|++|||||+|.+.| +++|+.||+.++. .+|.++..++|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999875 7999999999999 77767789999999985
No 126
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.2e-07 Score=80.59 Aligned_cols=98 Identities=12% Similarity=0.263 Sum_probs=78.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC---C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP---P 258 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~---~ 258 (365)
.+++.+. .+++.+|||||||+|..+.-|++.-. +++.+|. ++..+.|++ ..+|.++++|-..-+| +
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 4555566 78899999999999999999988743 8999998 787777774 4579999999998444 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
||.|++....-..|+. +.+-|+| ||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~~--------Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA--------LLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH--------HHHhccc---CCEEEEEEc
Confidence 9999998877655543 4455899 999998665
No 127
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.74 E-value=5.4e-08 Score=84.09 Aligned_cols=100 Identities=15% Similarity=0.311 Sum_probs=73.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-- 257 (365)
..+++.+. ++++.+|||||||+|.++..|+... +..+++.+|. +...+.+++ ..+|+++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34566666 7899999999999999999998874 4457899998 888887775 5689999999887443
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+||.|++.......+. .+.+-|++ ||+|++.-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEE
Confidence 5999999887754443 35566899 89888743
No 128
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.73 E-value=1.4e-07 Score=83.36 Aligned_cols=126 Identities=17% Similarity=0.318 Sum_probs=92.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI-- 256 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-- 256 (365)
.++..++ +.++.+|||.|.|+|.++..|++. .|.-++..+|. ++..+.|++ .+++++..+|+.+ -+
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4556666 899999999999999999999975 68889999998 777777764 5789999999965 23
Q ss_pred ---CCceEEEeccccccCChhHHHHHHHHHHHhc-ccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcccc
Q 017835 257 ---PPADAVLIKCVLHNWNDEECVKILKNCKKAI-AINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEER 332 (365)
Q Consensus 257 ---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L-~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 332 (365)
..+|.|++ +++++ ...+..+.++| +| ||++.++-+....
T Consensus 109 ~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~---gG~i~~fsP~ieQ--------------------------- 151 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDP--WEAIPHAKRALKKP---GGRICCFSPCIEQ--------------------------- 151 (247)
T ss_dssp T-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EE---EEEEEEEESSHHH---------------------------
T ss_pred cccCcccEEEE-----eCCCH--HHHHHHHHHHHhcC---CceEEEECCCHHH---------------------------
Confidence 24899887 67877 67899999999 88 8999887764321
Q ss_pred CHHHHHHHHHhcCCccceEEEc
Q 017835 333 NEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.....+.|++.||..+++...
T Consensus 152 -v~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 152 -VQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHCCCeeeEEEEE
Confidence 123355667788887777655
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=1.4e-07 Score=86.95 Aligned_cols=98 Identities=15% Similarity=0.252 Sum_probs=73.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---CC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---PP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~~ 258 (365)
+++.++ .+++.+|||||||+|.++..+++..+. .+++++|. +.+++.+++ .+++.++.+|..+.. ..
T Consensus 72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 334444 567789999999999999999998753 47999999 888877664 457999999987632 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
||+|++...+++. ...+.+.|+| ||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 9999998665433 2345678999 89888743
No 130
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=9.3e-08 Score=80.34 Aligned_cols=87 Identities=18% Similarity=0.387 Sum_probs=64.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D 260 (365)
.+++.++ ..++.+|||||||+|.++..++++ ..+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .+|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 4555555 567789999999999999999988 578999999 778877764 3589999999988 444 388
Q ss_pred EEEeccccccCChhHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L 280 (365)
.|+++ ..++...+...+++
T Consensus 80 ~vi~n-~Py~~~~~~i~~~l 98 (169)
T smart00650 80 KVVGN-LPYNISTPILFKLL 98 (169)
T ss_pred EEEEC-CCcccHHHHHHHHH
Confidence 88765 44445444333333
No 131
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.71 E-value=4.1e-07 Score=78.61 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=107.1
Q ss_pred hHHHhhCchHHHHHHHHhhcCcc----cchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHH
Q 017835 162 WDYAVRETRLNHFFNEGMASDTR----LTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVA 237 (365)
Q Consensus 162 ~~~~~~~~~~~~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 237 (365)
++.+..+|...+.|+....+... .....+++.+.. .+....|.|+|||-+.++. . ...++..+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~--~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR-RPKNIVIADFGCGEAKIAS---S--ERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh-CcCceEEEecccchhhhhh---c--cccceeeeeeec---
Confidence 44556677777777776665432 223456666651 3567899999999999876 1 123577777522
Q ss_pred hcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchh
Q 017835 238 DLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE 314 (365)
Q Consensus 238 ~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 314 (365)
.+-.++.+|+.+ |.+ +.|+++++..|- .. ....+++++.|+|+| ||.++|.|...
T Consensus 210 -----~~~~V~~cDm~~vPl~d~svDvaV~CLSLM--gt-n~~df~kEa~RiLk~---gG~l~IAEv~S----------- 267 (325)
T KOG3045|consen 210 -----VNERVIACDMRNVPLEDESVDVAVFCLSLM--GT-NLADFIKEANRILKP---GGLLYIAEVKS----------- 267 (325)
T ss_pred -----CCCceeeccccCCcCccCcccEEEeeHhhh--cc-cHHHHHHHHHHHhcc---CceEEEEehhh-----------
Confidence 233456889988 655 599999887763 32 347889999999999 99999988521
Q ss_pred hhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 315 TQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
+.-+...+.+.|...||.+..+.....++.+.++.
T Consensus 268 ---------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefk 302 (325)
T KOG3045|consen 268 ---------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFK 302 (325)
T ss_pred ---------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEe
Confidence 11145567888999999987776666666666654
No 132
>PLN02366 spermidine synthase
Probab=98.70 E-value=1.5e-07 Score=86.14 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=73.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CC-C-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AI-P-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~-~-~~D~i 262 (365)
++.++||+||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... .. + .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999987633458999999 778887764 3689999999754 33 2 59999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++-..-+.-+.. -..++++.+++.|+| ||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence 985433222211 135789999999999 8887653
No 133
>PRK01581 speE spermidine synthase; Validated
Probab=98.70 E-value=1.1e-07 Score=87.84 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=75.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCCC---CC-Cce
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFEA---IP-PAD 260 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~---~~-~~D 260 (365)
.+..+||+||||.|..+..+++..+..+++.+|+ +.+++.|++ .+|++++.+|..+- .+ .||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999999999999998666679999999 888888773 46999999998872 22 599
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 261 AVLIKCVLH---NWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 261 ~i~~~~vlh---~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+|++...-. ....-...++++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999863210 11112236789999999999 8887765
No 134
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.67 E-value=1.3e-07 Score=87.37 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=73.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------------CCCeEEEeCCCCCC-------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------------NGNLKYVGGNMFEA------- 255 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~~------- 255 (365)
+..+|||+|||.|+-+..+..... .+++++|+ ...++.|++ .-...++.+|.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 779999999999999888888643 47999999 777777663 12456788888762
Q ss_pred CC--CceEEEeccccccC--ChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 256 IP--PADAVLIKCVLHNW--NDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 256 ~~--~~D~i~~~~vlh~~--~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.+ .||+|-|...+|+. +.+.+..+|+++.+.|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence 12 59999999999985 567788899999999999 88887764
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.65 E-value=1.6e-07 Score=85.04 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=74.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---C-CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---A-IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~-~~~~D~i~ 263 (365)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766678999999 778777664 3578888888765 1 23599999
Q ss_pred eccccccCChhH--HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDEE--CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+...-..-+... ..++++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 865432222222 36889999999999 8888875
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.65 E-value=2.1e-07 Score=79.79 Aligned_cols=96 Identities=19% Similarity=0.335 Sum_probs=69.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC----CC--CceEEEeccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA----IP--PADAVLIKCV 267 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~~--~~D~i~~~~v 267 (365)
...+||||||.|.++..++..+|+..++|+|. ...+..+.. ..++.++.+|...- ++ +.|-|++.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 34999999999999999999999999999998 555555442 78999999998871 22 4677666432
Q ss_pred cccCChh-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWNDE-------ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
= -|+.. -...+|+.+++.|+| ||.|.+..
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 1 12211 125789999999999 89887765
No 137
>PRK03612 spermidine synthase; Provisional
Probab=98.64 E-value=3e-07 Score=90.75 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=74.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCC---CCC-Cc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFE---AIP-PA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~---~~~-~~ 259 (365)
++.++|||||||+|..+..+++. |. .+++.+|+ +++++.+++ .+|++++.+|..+ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45689999999999999999874 55 79999999 889888775 2689999999887 223 59
Q ss_pred eEEEeccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 260 DAVLIKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 260 D~i~~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999997433221111 124689999999999 8887764
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=98.64 E-value=4.2e-07 Score=79.02 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceEEEeccccccCC-
Q 017835 201 LNTLVDVGGGTGTLASAIAKKF---PHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWN- 272 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~- 272 (365)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++ ..++.++.+|+.. +.. .||+|+++--.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998874 4678999999 888888886 4578999999986 333 599999975554221
Q ss_pred -h--------hHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 273 -D--------EECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 273 -~--------~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+ .-...+++++.++++| |.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 1 1235688899997776 66633
No 139
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.63 E-value=8.6e-07 Score=79.13 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCCeEEEecCCcc----HHHHHHHHHCC-----CCeEEEeec-hHHHHhccc----------------------------
Q 017835 200 GLNTLVDVGGGTG----TLASAIAKKFP-----HIECTVFDQ-PHVVADLKS---------------------------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 241 (365)
+.-+|.-+||++| .++..|.+.+| .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 34555666675 478899999 888888762
Q ss_pred -------CCCeEEEeCCCCCCC--C-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 242 -------NGNLKYVGGNMFEAI--P-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 242 -------~~~i~~~~~d~~~~~--~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
...|.|..+|++++. + .+|+|+|.+||-+++.+...+++++.+..|+| ||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 346889999999843 3 49999999999999999889999999999999 8888873
No 140
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.61 E-value=3.6e-07 Score=80.79 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=74.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---------CCCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---------IPPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---------~~~~ 259 (365)
..+.++|||||||+|.-+..++...+ +.+++.+|. ++..+.+++ .++|+++.+|..+. .++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998764 679999999 777777764 46899999999762 1359
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|+|++-. ..+.-..++..+.+.|+| ||.|++-+.
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKV---GGIIAFDNT 179 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CeEEEEEcC
Confidence 9998842 234446789999999999 776555443
No 141
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=81.22 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=70.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe--CCCCC----CC---C-CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG--GNMFE----AI---P-PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~--~d~~~----~~---~-~~D~i~~~~v 267 (365)
...+.++|||||+|..++.++..+. ++++.|. +.|++.+++..+++... ..|.+ ++ + +.|+|++..+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3445999999999988888888864 6899999 99999999755544322 22222 11 2 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+|-++- .++.+.++++||+ +||.+.|-.
T Consensus 110 ~HWFdl---e~fy~~~~rvLRk--~Gg~iavW~ 137 (261)
T KOG3010|consen 110 VHWFDL---ERFYKEAYRVLRK--DGGLIAVWN 137 (261)
T ss_pred HHhhch---HHHHHHHHHHcCC--CCCEEEEEE
Confidence 986655 4689999999998 256666643
No 142
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=5.4e-07 Score=86.97 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=79.9
Q ss_pred HhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC---C-C-Cc
Q 017835 191 IHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA---I-P-PA 259 (365)
Q Consensus 191 ~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~-~-~~ 259 (365)
...++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ ..+++++.+|+.+. . + .|
T Consensus 237 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 237 ATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 33444 56778999999999999999999988789999999 888887764 23478899999762 1 2 49
Q ss_pred eEEEecc------cccc-------CChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 260 DAVLIKC------VLHN-------WNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 260 D~i~~~~------vlh~-------~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|.|++.- ++.+ ....+ ..++|+++.+.|+| ||++++.....
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 9998532 1111 11111 24789999999999 99998877544
No 143
>PLN02672 methionine S-methyltransferase
Probab=98.58 E-value=6.6e-07 Score=93.59 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=55.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------------------CCCeEEEeCCCCCCCC
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------------------NGNLKYVGGNMFEAIP 257 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~i~~~~~d~~~~~~ 257 (365)
+.+|||+|||+|..++.+++.+|..+++++|+ +.+++.++. .+|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888887753 1479999999998543
Q ss_pred ----CceEEEec
Q 017835 258 ----PADAVLIK 265 (365)
Q Consensus 258 ----~~D~i~~~ 265 (365)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999885
No 144
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.55 E-value=5.4e-07 Score=87.02 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=80.7
Q ss_pred HhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-C----C
Q 017835 191 IHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-I----P 257 (365)
Q Consensus 191 ~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~----~ 257 (365)
...++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ ..++.+..+|.... . .
T Consensus 231 ~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 231 ATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 33444 56778999999999999999999888789999999 888877664 11334467776652 2 2
Q ss_pred CceEEEec------cccccCChh--------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 258 PADAVLIK------CVLHNWNDE--------------ECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 258 ~~D~i~~~------~vlh~~~~~--------------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.||.|++- .++++.++- ...++|+++.+.||| ||+|++.......
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~ 373 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP 373 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 49999862 455544431 126899999999999 9999998776643
No 145
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.54 E-value=6.2e-07 Score=79.27 Aligned_cols=140 Identities=22% Similarity=0.327 Sum_probs=82.1
Q ss_pred CCCeEEEecCCcc--HHHHHHHH-HCCCCeEEEeec-hHHHHhccc----CCC--eEEEeCCCCCCC-----C-------
Q 017835 200 GLNTLVDVGGGTG--TLASAIAK-KFPHIECTVFDQ-PHVVADLKS----NGN--LKYVGGNMFEAI-----P------- 257 (365)
Q Consensus 200 ~~~~iLDiG~G~G--~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~----~~~--i~~~~~d~~~~~-----~------- 257 (365)
+...+||||||-= ....++++ ..|+++++.+|. |-++..++. ..+ ..++.+|+.++. |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 7789999999954 34555655 489999999999 778887764 344 889999999841 1
Q ss_pred --CceEEEeccccccCCh-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCH
Q 017835 258 --PADAVLIKCVLHNWND-EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNE 334 (365)
Q Consensus 258 --~~D~i~~~~vlh~~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~ 334 (365)
..=.+++..+||+++| ++...+++.++..|.| |+.|.|.....+... . ........+.........||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p-~----~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAP-E----RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSH-H----HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCH-H----HHHHHHHHHHcCCCCceecCH
Confidence 1335788999999987 6778999999999999 777777766543221 1 112233333333346778999
Q ss_pred HHHHHHHHhcCCccc
Q 017835 335 KEWAKLFFEAGFSDY 349 (365)
Q Consensus 335 ~e~~~ll~~aGf~~~ 349 (365)
+|+.++|. ||.++
T Consensus 220 ~ei~~~f~--g~elv 232 (267)
T PF04672_consen 220 EEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHCCT--TSEE-
T ss_pred HHHHHHcC--CCccC
Confidence 99999987 77654
No 146
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=9.9e-07 Score=85.64 Aligned_cols=104 Identities=18% Similarity=0.289 Sum_probs=77.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEec--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIK-- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~-- 265 (365)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|+.+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45678999999999999998888653 468999999 888887764 3468999999877323 49999862
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 ----CVL-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 ----~vl-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.++ .+++.+. -.++|+++.+.|+| ||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 111 1223222 24689999999999 899998776654
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=9.4e-07 Score=85.82 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=76.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~~-~~D~i~~~ 265 (365)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4667899999999999999999886 6789999999 777777654 24589999999762 33 59999874
Q ss_pred cc------cccCC-------hhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 CV------LHNWN-------DEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ~v------lh~~~-------~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
-- +.+.+ ..+ ..++|+++.+.|+| ||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 22 11111 111 24689999999999 89988665444
No 148
>PRK04148 hypothetical protein; Provisional
Probab=98.48 E-value=2e-06 Score=68.23 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=70.8
Q ss_pred HHhhccccccCCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC----CceEEE
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGT-LASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP----PADAVL 263 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~----~~D~i~ 263 (365)
+.+.++ .....+|||||||+|. .+..|.+. +..++++|. +..++.+++ ..+.++.+|++++-. ++|+|+
T Consensus 8 l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 444454 3345899999999996 77777765 679999999 888887764 567899999999643 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.. +.++.+.-+.++++... .-++|.-.
T Consensus 83 sir-----pp~el~~~~~~la~~~~-----~~~~i~~l 110 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN-----VPLIIKPL 110 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC-----CCEEEEcC
Confidence 866 55566666777777663 45555443
No 149
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=1.2e-06 Score=84.73 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=78.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C----C--CCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A----I--PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~----~--~~~D~i 262 (365)
..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 5677899999999999999999875 4568999999 778877764 3568999999876 2 1 149999
Q ss_pred Eec------cccccCChh-------H-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 263 LIK------CVLHNWNDE-------E-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 263 ~~~------~vlh~~~~~-------~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
++. .++++.++. . -.++|+++.+.||| ||+|+......
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 973 344443331 1 26889999999999 99988876544
No 150
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.46 E-value=1.8e-06 Score=79.21 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEe----CCCCCCC--C--CceEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVG----GNMFEAI--P--PADAV 262 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~----~d~~~~~--~--~~D~i 262 (365)
...++||||||+|.....++.+.++.+++++|+ +..++.|+. .++|++.. .+++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999999888888888999999999 888888774 24677753 2333321 2 49999
Q ss_pred EeccccccCChhH---HHHHHHHHH----------------HhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh
Q 017835 263 LIKCVLHNWNDEE---CVKILKNCK----------------KAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM 323 (365)
Q Consensus 263 ~~~~vlh~~~~~~---~~~~L~~i~----------------~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 323 (365)
+|+--+|.-..+. ...-.+++. +.+.+ ||.+-++..+..+... ...-..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~------~~~~~gw-- 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKA------FAKQVLW-- 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHH------HHhhCcE--
Confidence 9987776433321 112222222 22234 5665555444433210 0001111
Q ss_pred hhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 324 MVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 324 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
....-++.-+.+.+.+.|++.|.+.+++..+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 0112255569999999999999988888777
No 151
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.44 E-value=8.6e-07 Score=79.07 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=76.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------CCCeEEEeCCCCCC-----C---
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------NGNLKYVGGNMFEA-----I--- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~~-----~--- 256 (365)
.++...++|+|||.|+-++..-++.-+ .++++|+ ...++++++ .-.+.|+.+|.+.. +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 367889999999999999988877432 7899999 455777764 22467889998861 2
Q ss_pred -CCceEEEecccccc-C-ChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 257 -PPADAVLIKCVLHN-W-NDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 257 -~~~D~i~~~~vlh~-~-~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|.||+|-|..++|+ | +.+.+..+|+++.+.|+| ||.++-.
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIgT 236 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIGT 236 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEEe
Confidence 34999999999997 3 456788999999999999 7766654
No 152
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.44 E-value=6.2e-07 Score=75.80 Aligned_cols=93 Identities=13% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCe--EEEeCCCCC--CCC--CceEEEeccccc---
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNL--KYVGGNMFE--AIP--PADAVLIKCVLH--- 269 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i--~~~~~d~~~--~~~--~~D~i~~~~vlh--- 269 (365)
...-|||||||+|.-+..|... +...+++|+ |.|++.+.+ ..+ .++.+|+-+ |++ .||.+++...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3789999999999998887765 578999999 999999885 323 467778887 443 399987754442
Q ss_pred ------cCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 270 ------NWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 270 ------~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
|.|......++..++..|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 23445566788889999998 776655
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.43 E-value=1.3e-06 Score=73.64 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=67.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCCC------C-CceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEAI------P-PADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~------~-~~D~ 261 (365)
..++.+|||+|||+|..++.++..++..+++..|.++.++..+. ..++++...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999998877789999998666665543 367888888876622 2 4999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|+.+.++|+ ++....+++.+.+.|+| +|.+++.-...
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999984 55668899999999999 67766666544
No 154
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.42 E-value=1.7e-06 Score=77.74 Aligned_cols=82 Identities=16% Similarity=0.362 Sum_probs=63.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCCceE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPPADA 261 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~~D~ 261 (365)
..+++.++ ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 44555555 567789999999999999999998 358999999 778877764 3689999999988 6777898
Q ss_pred EEeccccccCChh
Q 017835 262 VLIKCVLHNWNDE 274 (365)
Q Consensus 262 i~~~~vlh~~~~~ 274 (365)
|+++-. ++++.+
T Consensus 95 Vv~NlP-y~i~s~ 106 (258)
T PRK14896 95 VVSNLP-YQISSP 106 (258)
T ss_pred EEEcCC-cccCcH
Confidence 877544 445543
No 155
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.41 E-value=7.3e-07 Score=76.86 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=76.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---------CCCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---------IPPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---------~~~~ 259 (365)
..+.++||+||+++|.-+..+++..| +.+++.+|. +...+.|++ .++|+++.+|..+. ...|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45778999999999999999999876 689999999 777777764 57999999998761 1259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
|+|++-. ...+-...+..+.+.|+| |.++|+|.+..
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEccccc
Confidence 9999854 344557889999999999 66666665553
No 156
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.40 E-value=1.6e-06 Score=84.14 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-----C--CCceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-----I--PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-----~--~~~D~i~ 263 (365)
..++.+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+. + ..||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4567899999999999999999885 68999999 888888774 35799999998752 2 2489998
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+.- |.....++++.+.+ ++| ++.++|.
T Consensus 373 ~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyvS 399 (443)
T PRK13168 373 LDP-----PRAGAAEVMQALAK-LGP---KRIVYVS 399 (443)
T ss_pred ECc-----CCcChHHHHHHHHh-cCC---CeEEEEE
Confidence 732 21122345555555 577 4555553
No 157
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.40 E-value=3.5e-06 Score=76.00 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=76.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~~~D~i~~~~ 266 (365)
..++.+|||+|||+|..+..+++... ..+++++|. +..++.+++ ..+++++..|... + .+.||.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 46778999999999999999988764 358999999 888777664 3568888888765 2 23599998732
Q ss_pred ------ccc-------cCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 267 ------VLH-------NWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 267 ------vlh-------~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
++. .|+++. ..++|+++.+.|+| ||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 221 122222 24699999999999 898877665443
No 158
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.39 E-value=1.6e-06 Score=77.72 Aligned_cols=83 Identities=14% Similarity=0.320 Sum_probs=61.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCCce-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPPAD- 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~~D- 260 (365)
..+++.++ ..++.+|||||||+|.++..|++.++ +++++|. +.+++.++. ..+++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 44555555 56778999999999999999999975 5888888 777777764 3689999999988 555565
Q ss_pred -EEEeccccccCChh
Q 017835 261 -AVLIKCVLHNWNDE 274 (365)
Q Consensus 261 -~i~~~~vlh~~~~~ 274 (365)
.+++++.-+|++.+
T Consensus 95 ~~~vvsNlPy~i~~~ 109 (253)
T TIGR00755 95 QLKVVSNLPYNISSP 109 (253)
T ss_pred cceEEEcCChhhHHH
Confidence 34445555555544
No 159
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.37 E-value=1.5e-06 Score=78.81 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=61.0
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCCCc--e
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIPPA--D 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~~~--D 260 (365)
..+++.+. ..++.+|||||||+|.++..++++.+ +++++|. +.+++.+++ ..+++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34455555 56778999999999999999999965 8999999 888888765 3689999999987 44443 5
Q ss_pred EEEeccccccCChh
Q 017835 261 AVLIKCVLHNWNDE 274 (365)
Q Consensus 261 ~i~~~~vlh~~~~~ 274 (365)
.|+. +.-++.+.+
T Consensus 108 ~vv~-NlPY~iss~ 120 (272)
T PRK00274 108 KVVA-NLPYNITTP 120 (272)
T ss_pred eEEE-eCCccchHH
Confidence 5554 444445443
No 160
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=3.9e-06 Score=80.91 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=77.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C-C-C-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A-I-P-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~-~-~~D~i~~~ 265 (365)
..++.+|||+|||+|..+..++... ++.+++++|+ +..++.+++ ..+++++.+|..+ + . + .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5677899999999999999999875 4679999999 888887764 3468899999876 2 1 2 49999873
Q ss_pred c------cccc-------CChh-------HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 266 C------VLHN-------WNDE-------ECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 266 ~------vlh~-------~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
- ++.. ++.+ .-.++|.++.+.|+| ||.++........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~ 371 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTK 371 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCCh
Confidence 2 2221 1111 126789999999999 8988777665543
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.37 E-value=5.1e-06 Score=67.30 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=88.8
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-C-----CC
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-A-----IP 257 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~-----~~ 257 (365)
+..+...++ ...+.-|||+|.|+|.++.+++++. +.-..+.++. ++......+ .+.+.++.||.+. . .+
T Consensus 37 A~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 37 ARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 344444455 6778899999999999999999874 5557788887 666666654 6777789999887 2 22
Q ss_pred --CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 258 --PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 258 --~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.||.|++.--+-.++.....++|+++...|++ ||.++.+...
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 49999999999899999999999999999999 8988887765
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.34 E-value=3.7e-06 Score=72.62 Aligned_cols=100 Identities=15% Similarity=0.245 Sum_probs=80.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEe-CCCCC---C--CCCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVG-GNMFE---A--IPPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~-~d~~~---~--~~~~D~i 262 (365)
.++.++|||||.+.|.-++.|+...| +.+++.+|. ++..+.|++ .++|+++. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56889999999999999999999999 889999999 888888875 56788888 57776 2 2469999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
++-. ....-.+.|..+.+.|+| |.|+++|.+....
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 8843 334447889999999999 6677777766554
No 163
>PLN02476 O-methyltransferase
Probab=98.32 E-value=4.4e-06 Score=75.02 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=76.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~------~~~ 259 (365)
..+.++|||||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.+|..+. . +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999998765 668999998 777777764 57999999998762 1 359
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
|+|++-. +...-..++..+.+.|+| ||. +++|.++-.
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGv-IV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGV-IVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CcE-EEEecCccC
Confidence 9998843 344567889999999999 555 555555433
No 164
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.30 E-value=3.6e-06 Score=72.48 Aligned_cols=109 Identities=12% Similarity=0.209 Sum_probs=65.9
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEEEeCCC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKYVGGNM 252 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d~ 252 (365)
.+++.+. +.+...++|||||.|......+-..+--+++|+++ +...+.+.. ..++++..+||
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3555555 67889999999999999888877765445999998 555444331 46788999999
Q ss_pred CCC------CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 253 FEA------IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 253 ~~~------~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.++ +..+|+|++++.+ ++++ ...-|++....||+ |.+++-.....+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCPR 163 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-T
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCCC
Confidence 983 2469999999886 4554 45556777788998 6666655555444
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.28 E-value=4.1e-06 Score=76.41 Aligned_cols=88 Identities=22% Similarity=0.400 Sum_probs=67.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~ 258 (365)
..+++... ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34555555 5677899999999999999999874 57899998 778877664 3689999999988 5667
Q ss_pred ceEEEeccccccCChhHHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L 280 (365)
+|+|++ +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 887765 556667766555555
No 166
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.28 E-value=8.8e-06 Score=73.00 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCCC-ceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIPP-ADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~~-~D~i~~~~vlh~ 270 (365)
.++.|||||||+|-++.-.+.+. ..++..++..+|.+.|++ .+||++++|-+.+ ++|+ .|++++--.=+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 45899999999999988777664 458889998899888875 6899999999988 7885 999988543333
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+-.+.-.+---.+++.|+| .|+++
T Consensus 256 L~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC---CCccc
Confidence 3333333444467799999 68776
No 167
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.27 E-value=5.8e-06 Score=74.87 Aligned_cols=103 Identities=19% Similarity=0.329 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc----CCCeEE--EeCCCCC---CCCCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS----NGNLKY--VGGNMFE---AIPPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~~i~~--~~~d~~~---~~~~~D~i~~~~v 267 (365)
-...+|||+|+|+|..+-++...++.. +++.+|. +.+.+.++. ...... ...++.. +++..|+|+++++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 345799999999999988888888744 6889998 777776653 111110 1112221 3445799999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
|-.+++....++++++.+.+. +.|+|+|+-.+..
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred hhcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 999988888889999988875 5899999866554
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.25 E-value=7.9e-06 Score=71.35 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=70.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----C-CCeEEEeCCCCC--C-C-C--CceEEEecccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----N-GNLKYVGGNMFE--A-I-P--PADAVLIKCVL 268 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~i~~~~~d~~~--~-~-~--~~D~i~~~~vl 268 (365)
..+||||||.|.++..+++++|+..++|+++ ...+..+.+ . .++.++++|... + . + +.|-|.+...=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999998 555444432 3 389999999877 1 2 2 46666553321
Q ss_pred ccCChh-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 269 HNWNDE-------ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 269 h~~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
-|+.. -...+|+.+.+.|+| ||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 12211 124789999999999 89888764
No 169
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.24 E-value=1.1e-05 Score=68.72 Aligned_cols=121 Identities=16% Similarity=0.176 Sum_probs=90.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC-CCC-----CceEEEeccccccCChh
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE-AIP-----PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~-----~~D~i~~~~vlh~~~~~ 274 (365)
..++|||||=+....+. .++-..++-+|+.. ..-.+...||++ |.| .||+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999987665433 34556789999733 122345778888 665 39999999999999865
Q ss_pred -HHHHHHHHHHHhcccCCCCcE-----EEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 275 -ECVKILKNCKKAIAINGKAGK-----VIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 275 -~~~~~L~~i~~~L~p~~~gG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
+.-++++++++.|+| +|. |+|+-+..- ..|.+..+.+.|..+++.-||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 678999999999999 788 777643210 13566668999999999999999
Q ss_pred ceEEEcCC
Q 017835 349 YKITDVLG 356 (365)
Q Consensus 349 ~~~~~~~~ 356 (365)
++.+...-
T Consensus 177 ~~~~~~~K 184 (219)
T PF11968_consen 177 VKYKKSKK 184 (219)
T ss_pred EEEEecCe
Confidence 88876654
No 170
>PLN02823 spermine synthase
Probab=98.22 E-value=6.8e-06 Score=76.21 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCC---C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEA---I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~-~~~D~i~ 263 (365)
...++||.||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+- . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998766678999999 888888874 46899999998872 2 2599999
Q ss_pred eccccccCC--hh---HHHHHHH-HHHHhcccCCCCcEEEE
Q 017835 264 IKCVLHNWN--DE---ECVKILK-NCKKAIAINGKAGKVII 298 (365)
Q Consensus 264 ~~~vlh~~~--~~---~~~~~L~-~i~~~L~p~~~gG~lli 298 (365)
+-.. ..+. .. -..++++ .+++.|+| ||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 8631 1110 00 1246787 89999999 777655
No 171
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.6e-06 Score=69.18 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=73.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhccc----------------CCCeEEEeC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK--FPHIECTVFDQ-PHVVADLKS----------------NGNLKYVGG 250 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~ 250 (365)
+++.+...+.++.+.||||+|+|.++..++.. .++...+|+|. ++.++..++ ..++.++.|
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 44455545788999999999999999888754 34444588888 888876653 457889999
Q ss_pred CCCCC---CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 251 NMFEA---IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 251 d~~~~---~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|...- ..+||.|++-... .++.+++-.-|+| ||+++|-
T Consensus 152 Dgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred CccccCCccCCcceEEEccCc--------cccHHHHHHhhcc---CCeEEEe
Confidence 99882 3369999986432 3455667777888 8998873
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.22 E-value=1.1e-05 Score=77.84 Aligned_cols=128 Identities=16% Similarity=0.266 Sum_probs=77.5
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcccc--ccCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDV--FEGLNTLVDVGGGTGTLASAIAKKF----PHIECTVFDQ- 232 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~iLDiG~G~G~~~~~l~~~~----p~~~~~~~D~- 232 (365)
..|+.+.+++..-..|.+++.. .+.+..... ......|+|||||+|-++...+++. ...++..++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4577788887766666665432 111111100 1135789999999999987766553 4568999997
Q ss_pred hHHHHhc----cc---CCCeEEEeCCCCC-CCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 233 PHVVADL----KS---NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 233 ~~~~~~a----~~---~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+.+.... +. .++|+++.+|+.+ ..| .+|+|++-..=.....+-..+.|....+.|+| ||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEEe
Confidence 4433322 22 5899999999998 566 59999885432222333445668888899999 65544
No 173
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.21 E-value=5.6e-06 Score=71.08 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---C-CceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---P-PADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~-~~D~i~~~~vl 268 (365)
...+|||+|||+|.++..++.+. ..+++++|. +..++.+++ ..+++++.+|+.+.. . .||+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998766554 358999998 777776664 357999999987632 2 49999986553
Q ss_pred ccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 017835 269 HNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~~ 303 (365)
+. . ...++++.+.+ .|+| +.++++|...
T Consensus 132 ~~-g--~~~~~l~~l~~~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 132 RK-G--LLEETINLLEDNGWLAD----EALIYVESEV 161 (199)
T ss_pred CC-C--hHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence 21 1 12344555544 3777 4455566543
No 174
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.19 E-value=1.1e-05 Score=72.69 Aligned_cols=96 Identities=15% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CCC-CceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AIP-PADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~~-~~D~i~~ 264 (365)
..++||-||+|.|.++.++++..+--+++.+|+ +.+++.+++ .+|++++-.|..+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 346999999999999999999988889999999 999998885 3899999999887 344 5999998
Q ss_pred ccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 265 KCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 265 ~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
-..=. .... -..++++.++++|+| +|.++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 55432 1110 126899999999999 7777766
No 175
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=4.4e-06 Score=73.69 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=78.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCCh-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND- 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~- 273 (365)
..+..++|+|||.|.++. .+|.+..++.|+ ...+..+++.+.......|+.. |.+ .+|..+...++||++.
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 447899999999998854 258889999999 6677777754443566778887 554 5999999999999974
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.....+++++.+.++| ||..+|.-+..
T Consensus 120 ~RR~~~l~e~~r~lrp---gg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRP---GGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCceEEEEehh
Confidence 4568999999999999 99988875544
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.12 E-value=1.6e-05 Score=70.52 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=76.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C-------CC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I-------PP 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------~~ 258 (365)
..+.++||+||+++|.-++.++... ++.+++.+|. ++..+.|++ .++|+++.||..+ + . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 4567899999999999999999886 4779999998 777777664 6899999999877 2 1 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
||+|++-. ....-...+..+.+.|+| |.++|+|.++-.
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~----GGviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV----GGVIGYDNTLWN 194 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC----CeEEEEcCCCCC
Confidence 99998843 344456788888999999 455666655533
No 177
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.07 E-value=7.8e-05 Score=65.31 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=84.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHH-hcccCCCeE-EEeCCCCC----CC----
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVA-DLKSNGNLK-YVGGNMFE----AI---- 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~i~-~~~~d~~~----~~---- 256 (365)
..+++.++ ....+.+|||+|||+|.++..+++. +..+++++|. +.++. ..++..++. +...|+.. ++
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 34455554 1235679999999999999999987 3458999999 54555 455556654 33445542 11
Q ss_pred CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 257 PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 257 ~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
..+|+.+++.. .+|..+.+.|+| |-.++++.+-+.-.... ........|- .....-.++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~---~~~~~L~KPqFE~~~~~--~~~~giv~~~------~~~~~~~~~ 200 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP---NDLTLLFKPQFEAGREK--KNKKGVVRDK------EAIALALHK 200 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc---CeEEEEcChHhhhcHhh--cCcCCeecCH------HHHHHHHHH
Confidence 23676666543 357889999998 55666665444222110 0000000000 011124466
Q ss_pred HHHHHHhcCCccceEEEcC
Q 017835 337 WAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~ 355 (365)
+..++.+.||++..+.+-|
T Consensus 201 ~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHcCCCeEeeEEECC
Confidence 7777888899988776553
No 178
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=2.7e-05 Score=64.80 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=56.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCCCceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIPPADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~~~D~i~~~~vlh 269 (365)
-.+++|+|+|||||.+++..+-..| .+++++|+ ++.++.+++ ..++.++..|+.+--..+|.++++--+-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG 119 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFG 119 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCc
Confidence 3567999999999999988877654 48999999 899988876 4589999999977666788888865443
No 179
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.02 E-value=2e-05 Score=70.12 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=73.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---C-CC-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---A-IP-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~-~~-~~D~i 262 (365)
++.++||=||+|.|..+..+++..+-.+++.+|+ +.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999998766679999999 888888774 4699999999876 2 33 59999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++-..--..+.. -..++++.+++.|+| ||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 884332111111 136889999999999 77766654
No 180
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.02 E-value=1.8e-05 Score=81.13 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=71.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------C-CCeEEEeCCCCCC---CC-CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------N-GNLKYVGGNMFEA---IP-PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~~-~~D~i~~~ 265 (365)
..+.+|||+|||+|.++..++.. ...+++++|. +.+++.+++ . .+++++.+|+++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 34689999999999999999986 2347999999 888888775 2 4899999998772 23 59999984
Q ss_pred ccc--c-----c-CC-hhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 266 CVL--H-----N-WN-DEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 266 ~vl--h-----~-~~-~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
--- . . +. ...-..+++.+.+.|+| ||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 211 0 0 10 12235788889999999 8877664
No 181
>PRK00536 speE spermidine synthase; Provisional
Probab=98.02 E-value=4.6e-05 Score=67.95 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=68.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCCC-CCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEAI-PPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~~-~~~D~i~~~~ 266 (365)
++.++||=||||-|..++++++. |. +++.+|+ +.+++.+++ .+|++++.. +.+.. ..||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56799999999999999999987 54 9999999 888887775 678888762 32322 3699999864
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
. .+ ....+.++++|+| ||.++..
T Consensus 148 ~----~~---~~fy~~~~~~L~~---~Gi~v~Q 170 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE---DGVFISV 170 (262)
T ss_pred C----CC---hHHHHHHHHhcCC---CcEEEEC
Confidence 3 22 5678999999999 7777664
No 182
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.01 E-value=1.3e-05 Score=71.05 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=84.6
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc--------------------------
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS-------------------------- 241 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------------------------- 241 (365)
+.+.+.....++.++||||||+--+- ++...+.. +++..|. +...+..++
T Consensus 46 l~~~f~~g~~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~ 123 (256)
T PF01234_consen 46 LHETFSSGGVKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREK 123 (256)
T ss_dssp HHHHHHTSSS-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSG
T ss_pred HHHHhCccCcCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcch
Confidence 33444322335679999999996552 33333333 4666676 444432221
Q ss_pred --------CCCeE-EEeCCCCCC--C------CC-ceEEEeccccccCC--hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 242 --------NGNLK-YVGGNMFEA--I------PP-ADAVLIKCVLHNWN--DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 242 --------~~~i~-~~~~d~~~~--~------~~-~D~i~~~~vlh~~~--~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
...|+ ++..|+.++ + |+ +|++++..+|.-.+ .++-.+.++++.++||| ||.|+++..
T Consensus 124 ~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~ 200 (256)
T PF01234_consen 124 WEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGV 200 (256)
T ss_dssp HHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred hhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 11233 678899882 2 33 99999999997654 34567899999999999 898888776
Q ss_pred ecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 302 KMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
.-...... ... .+..-..+++.+++.++++||.+.+...
T Consensus 201 l~~t~Y~v-----G~~--------~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 201 LGSTYYMV-----GGH--------KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp SS-SEEEE-----TTE--------EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cCceeEEE-----CCE--------ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 43221100 000 0112223899999999999999888774
No 183
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.00 E-value=4.5e-05 Score=72.58 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=69.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------C-CCeEEEeCCCCCC---C---C-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------N-GNLKYVGGNMFEA---I---P-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~---~-~~D~i 262 (365)
.++.+|||+|||+|.++...+.. ...+++++|. +.+++.+++ . .+++++.+|+++. . . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 45689999999999998776643 3458999999 888887774 1 4789999999872 1 2 59999
Q ss_pred EeccccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++.---..-+. ..-..+++.+.+.|+| ||.|+...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 98633211111 1124556677889999 88888765
No 184
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.99 E-value=2.5e-05 Score=68.36 Aligned_cols=73 Identities=22% Similarity=0.507 Sum_probs=61.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~ 258 (365)
..+++.-+ .++...||+||.|||.++..|+++ +.+++.++. |.++....+ +...+++.||+++ ++|-
T Consensus 48 ~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 48 DQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 44555566 788999999999999999999998 678888888 888877664 5789999999999 7888
Q ss_pred ceEEEe
Q 017835 259 ADAVLI 264 (365)
Q Consensus 259 ~D~i~~ 264 (365)
+|+++.
T Consensus 124 fd~cVs 129 (315)
T KOG0820|consen 124 FDGCVS 129 (315)
T ss_pred cceeec
Confidence 998877
No 185
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.97 E-value=4.6e-05 Score=70.64 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=52.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C-CCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I-PPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~-~~~D~i~~~ 265 (365)
++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+- . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4589999999999999999985 578999999 888888764 35799999999762 2 249999885
No 186
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.96 E-value=4.3e-06 Score=69.97 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=86.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe-CCCCCCCCCceEEEeccccccCChhHH
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG-GNMFEAIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~-~d~~~~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
....++||+|.|.|..+..++..+.. +...++ ..|..+.++ .+..+.. -+..+..-.+|+|.|.++|.-..++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 44589999999999999998887654 333344 455555553 2222211 1111122259999999999766666
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC--HHHHHHHHHhcCCccceEEEc
Q 017835 277 VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN--EKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 277 ~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t--~~e~~~ll~~aGf~~~~~~~~ 354 (365)
-++|+.|+.+|+|+ .|++++.=...-....+. ..........-....+|+.+. ...+-++|+++||.+..+..+
T Consensus 186 ~kLL~Di~~vl~ps--ngrvivaLVLP~~hYVE~--N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPS--NGRVIVALVLPYMHYVET--NTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhccC--CCcEEEEEEecccceeec--CCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 78999999999994 577766432221111110 000000000001123455332 233668899999999988887
Q ss_pred C
Q 017835 355 L 355 (365)
Q Consensus 355 ~ 355 (365)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 5
No 187
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.92 E-value=3.2e-05 Score=70.37 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=69.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
-..+.|||||||+|-++..-+++. ..++.++|...+++.+.+ .+.|+++.+.+.+ .+| ..|+|++-+.=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 456899999999999999888886 568999998888877764 5678999998887 444 59999886554
Q ss_pred ccCC-hhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 269 HNWN-DEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 269 h~~~-~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+.+- +.....+|-.=-+.|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 4322 22233444444468998 77665
No 188
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.92 E-value=3.6e-05 Score=65.16 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=68.0
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC-CCceEEEeccccccCCh
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI-PPADAVLIKCVLHNWND 273 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-~~~D~i~~~~vlh~~~~ 273 (365)
+++|||+|.|.-++-|+=.+|+.+++.+|. ..-+...+. .++++++++.+.+ .. ..||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 433333322 5789999998887 33 3599999988752
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
...+++-+...+++ ||+++...
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 25677888888999 89888865
No 189
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.91 E-value=0.00014 Score=62.75 Aligned_cols=125 Identities=19% Similarity=0.275 Sum_probs=87.2
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--C-ceEEEeccccccCC
Q 017835 204 LVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--P-ADAVLIKCVLHNWN 272 (365)
Q Consensus 204 iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~-~D~i~~~~vlh~~~ 272 (365)
|.||||-.|.+...|++...--+++..|+ +..++.|++ .++|++..+|-++.++ + .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999987778999999 877887774 6899999999888654 3 889888764 4
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEE
Q 017835 273 DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 352 (365)
-.-..++|.+....++. ..++++ .+. .....++++|.+.||.+++=.
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP~-----------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QPN-----------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EES-----------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eCC-----------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 55567888877776664 234333 221 145678999999999987554
Q ss_pred Ec--CC-ceeEEEEeC
Q 017835 353 DV--LG-VRSLIEVYP 365 (365)
Q Consensus 353 ~~--~~-~~~vi~~~~ 365 (365)
.+ .+ +|.||.+.|
T Consensus 124 lv~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 124 LVEENGRFYEIIVAER 139 (205)
T ss_dssp EEEETTEEEEEEEEEE
T ss_pred EEeECCEEEEEEEEEe
Confidence 44 33 477877653
No 190
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.89 E-value=9.5e-06 Score=77.15 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=68.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEe---ec-hHHHHhcccCCCeEEEeCCCCC---CCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVF---DQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh 269 (365)
...+.+||||||+|.++..|.++ ++....+ |. +..++.|.+ -.|..+-+-+.+ |+| .||+|.|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 45689999999999999999988 4433222 22 233444432 223333333322 666 399999999999
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.|...+ ..+|-++-|+|+| ||.++...+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhcc---CceEEecCCccc
Confidence 998765 4688999999999 888877665443
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=8.4e-05 Score=65.81 Aligned_cols=92 Identities=15% Similarity=0.309 Sum_probs=65.8
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC--
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP-- 258 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~-- 258 (365)
...+++... ..+...|+|||+|.|.++..|+++.. +++++++ +..++..++ .++++++.+|+.+ +++.
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 355666665 56689999999999999999999954 5666666 666665554 5899999999999 7774
Q ss_pred ceEEEeccccccCChhHHHHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKN 282 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~ 282 (365)
.-..+.++.-++++.+-..++|..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhc
Confidence 223444566667776655555543
No 192
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.86 E-value=9.8e-05 Score=63.05 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C--C-C-ceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I--P-P-ADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~--~-~-~D~i~~ 264 (365)
.+.++||++||+|.++.+++.+.. .+++.+|. +..++.+++ .++++++.+|+++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 457999999999999999999864 37999998 677766653 35789999999652 1 1 2 677776
Q ss_pred ccccccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~~ 303 (365)
---... ....+++..+.+ .|++ +.++|+|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 433321 112344444433 5666 5677777644
No 193
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.83 E-value=8e-05 Score=73.34 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=70.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc-c-----CCCeEEEeCCCCC---CCC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK-S-----NGNLKYVGGNMFE---AIP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~-----~~~i~~~~~d~~~---~~~--~~D~i~~~~ 266 (365)
.....+||||||.|.++..++..+|+..++|+|. ...+..+. + ..++.++++|+.. .++ +.|-|++.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3568999999999999999999999999999998 44333322 1 4678888887642 344 377776643
Q ss_pred ccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWND-------EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.= -|+. --...+|+.+++.|+| ||.|.+..
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 22 1221 1135789999999999 89888754
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.80 E-value=5.7e-05 Score=68.62 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=62.1
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC--C-C-
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE--A-I- 256 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~--~-~- 256 (365)
..++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. +.+++.+++ .+|++++.+|+.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 355666665 56778999999999999999999986 789999999 899988875 2589999999886 1 1
Q ss_pred ---CCceEEEec
Q 017835 257 ---PPADAVLIK 265 (365)
Q Consensus 257 ---~~~D~i~~~ 265 (365)
+.+|.|++-
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 158888774
No 195
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.80 E-value=0.00015 Score=66.67 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=74.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-hHHHHhccc------CCCeEE--EeCCCCCC---C-----C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF----PHIECTVFDQ-PHVVADLKS------NGNLKY--VGGNMFEA---I-----P 257 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~i~~--~~~d~~~~---~-----~ 257 (365)
.+...|+|+|||+|.=+..|++.+ ...+++.+|+ ...++.+.. .+.+++ +++|+.+. . +
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 345689999999998877777665 3467999999 566665543 245655 78888662 2 1
Q ss_pred -CceEEE-eccccccCChhHHHHHHHHHHH-hcccCCCCcEEEE-Eeee
Q 017835 258 -PADAVL-IKCVLHNWNDEECVKILKNCKK-AIAINGKAGKVII-IDIK 302 (365)
Q Consensus 258 -~~D~i~-~~~vlh~~~~~~~~~~L~~i~~-~L~p~~~gG~lli-~e~~ 302 (365)
...+++ +..++.+++++++..+|+++++ .|+| |+.++| +|..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG~D~~ 200 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIGLDGC 200 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEecCCC
Confidence 245554 4579999999999999999999 9999 777776 4433
No 196
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.78 E-value=3.9e-05 Score=74.37 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=64.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-----C-C-CceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-----I-P-PADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-----~-~-~~D~i~ 263 (365)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+. . . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 48999999 888888775 35899999998651 1 1 489998
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+.-.=- . ....+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr~--G--~~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDPPRK--G--CAAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECcCCC--C--CCHHHHHHHHh-cCC---CEEEEE
Confidence 732210 1 01455665554 777 565555
No 197
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00097 Score=55.10 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=51.5
Q ss_pred CCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCC--CCceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAI--PPADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--~~~D~i~~~~ 266 (365)
...-++|||||+|..+..|++. .|+..+...|+ |..++.-.+ .-++..+..|+.+.+ .+.|+++++-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 3688999999999999888876 57888999999 777665433 445677888998843 4588888763
No 198
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.74 E-value=0.00011 Score=69.81 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=61.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C-CCceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I-PPADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~-~~~D~i~~~~vl 268 (365)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.+++ .++++++.+|+.+. . ..||+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4579999999999999999865 468999998 888887764 34799999998652 2 359998885321
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
-.+ ..++++.+. .++| ++.+++
T Consensus 311 ~G~----~~~~l~~l~-~~~p---~~ivyv 332 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAP---KFILYS 332 (374)
T ss_pred CCC----cHHHHHHHH-hcCC---CeEEEE
Confidence 111 134445554 3677 454444
No 199
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=9.3e-05 Score=63.15 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=89.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC--CC--eEEEeCCCCC-CCC--CceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN--GN--LKYVGGNMFE-AIP--PADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~--i~~~~~d~~~-~~~--~~D~i~~~~vlh~ 270 (365)
+....++|||||.|.....|.... --+.+..|. ..|++.++.. +. ++...+|-.. ++. ++|+|+.+..+|-
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 556799999999999999998875 226788888 7788877652 33 3445666544 554 4999999999984
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcc------ccCHHHHHHHHHhc
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGE------ERNEKEWAKLFFEA 344 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~t~~e~~~ll~~a 344 (365)
.++- ..-+.+|+.+||| +|.++ ....-.+.- .+.+....+..+-..+|- .-...++-.+|..|
T Consensus 150 ~NdL--Pg~m~~ck~~lKP---Dg~Fi-asmlggdTL-----yELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 150 TNDL--PGSMIQCKLALKP---DGLFI-ASMLGGDTL-----YELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hccC--chHHHHHHHhcCC---Cccch-hHHhccccH-----HHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 3432 5568899999999 56443 332222211 112222222222111221 11457888999999
Q ss_pred CCccceE
Q 017835 345 GFSDYKI 351 (365)
Q Consensus 345 Gf~~~~~ 351 (365)
||....+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9986654
No 200
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00011 Score=64.39 Aligned_cols=66 Identities=18% Similarity=0.354 Sum_probs=52.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC----CCC----CceEEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE----AIP----PADAVL 263 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~----~~~----~~D~i~ 263 (365)
....|||+|||+|..+..++...|.++++.+|. +.++..+.+ .+++.++..++.. +.+ .+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999999999999999999 666666553 6888888555544 332 489988
Q ss_pred ec
Q 017835 264 IK 265 (365)
Q Consensus 264 ~~ 265 (365)
++
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 85
No 201
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.00016 Score=62.40 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=83.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHH---hccc---CCCeEEEeCCCCC--CCCC-ceEEEecccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVA---DLKS---NGNLKYVGGNMFE--AIPP-ADAVLIKCVLHN 270 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~---~a~~---~~~i~~~~~d~~~--~~~~-~D~i~~~~vlh~ 270 (365)
..+++|||.|.|.-+.-|+=.+|+.+++.+|. ..-+. .+.. .++++++++-+.+ ..+. ||+|++..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998999999999996 33333 3332 6789999998877 2335 99999987652
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
...++.-+...+++ ||+++..-.....+ ...+.+.....-|+.+.+
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~~~k~~~~~~--------------------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFLAYKGLAGKD--------------------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcchhhhHHhhhh--------------------------hHHHHHHHHHhhcCcEEE
Confidence 23445556667777 77665432211000 234556666777888888
Q ss_pred EEEcC
Q 017835 351 ITDVL 355 (365)
Q Consensus 351 ~~~~~ 355 (365)
+....
T Consensus 193 ~~~~~ 197 (215)
T COG0357 193 VFSLT 197 (215)
T ss_pred EEEee
Confidence 87763
No 202
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00055 Score=58.78 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=92.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc--------CCCeEEEeCCCCC---CCC--CceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE---AIP--PADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~---~~~--~~D~i 262 (365)
.+.+.+|||.=.|-|.++++.+++ ++ +++-++- |.+++.|+- ..+|+++.||..+ .++ +||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 456899999999999999998888 44 7888887 888887763 4478999999987 344 48988
Q ss_pred Eec-cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 263 LIK-CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 263 ~~~-~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
+-- -=+.+-..--..++-++++|+|+| ||+++-.--..... +.... -.....+.|
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~Pg~r-----------yrG~d----------~~~gVa~RL 265 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNPGKR-----------YRGLD----------LPKGVAERL 265 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCCCcc-----------cccCC----------hhHHHHHHH
Confidence 541 011111222346789999999999 99998765432211 11111 235677889
Q ss_pred HhcCCccceEEEcC
Q 017835 342 FEAGFSDYKITDVL 355 (365)
Q Consensus 342 ~~aGf~~~~~~~~~ 355 (365)
+++||.+++.....
T Consensus 266 r~vGF~~v~~~~~~ 279 (287)
T COG2521 266 RRVGFEVVKKVREA 279 (287)
T ss_pred HhcCceeeeeehhc
Confidence 99999977765543
No 203
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.61 E-value=0.0017 Score=58.06 Aligned_cols=135 Identities=18% Similarity=0.138 Sum_probs=91.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechH-HH-------Hh---cc---------------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPH-VV-------AD---LK--------------------------- 240 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~-------~~---a~--------------------------- 240 (365)
+...+||-=|||-|.++..++.. +..+.+-|... |+ .. ..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 44689999999999999999998 55666666522 21 11 00
Q ss_pred ---------cCCCeEEEeCCCCC--CCC----CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 241 ---------SNGNLKYVGGNMFE--AIP----PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 241 ---------~~~~i~~~~~d~~~--~~~----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
...+++...|||.+ ..+ .+|+|+.++.+. .-+...+.|+.|.++||| ||..+=+-+..-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh 207 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPLLYH 207 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCcccc
Confidence 03478889999998 223 499998886664 344578999999999999 7855544444332
Q ss_pred CccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 306 EKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 306 ~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
.... . ......-+.+.+|++++.+..||++++-..
T Consensus 208 ~~~~------------~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 FEPM------------S-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCC------------C-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 2110 0 000112355899999999999999886655
No 204
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00046 Score=58.81 Aligned_cols=107 Identities=20% Similarity=0.200 Sum_probs=75.8
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCCCC---------
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAI--------- 256 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~--------- 256 (365)
..++.+++. .++++.+|+|+|+..|+++..+++.. ++.+++++|+.++-.. .+|.++.+|+..+-
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHc
Confidence 355677774 67899999999999999999888875 4456999998665543 45999999999831
Q ss_pred C--CceEEEec---cccccCC------hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 P--PADAVLIK---CVLHNWN------DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 ~--~~D~i~~~---~vlh~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+ .+|+|++- ++--+++ -.-+...+.-+...|+| ||.+++-.+
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f 160 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF 160 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence 2 26999853 2222222 23345556666779999 787777554
No 205
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.55 E-value=0.00018 Score=60.27 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCCCCCC-ceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFEAIPP-ADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~~~~-~D~i~~ 264 (365)
..-.+.|||||.|.++..|+..||+.-+.|.++ -.+.+..++ ..++.+...+.+.-.|+ |.---+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346899999999999999999999999999987 555444331 34667777666664443 222222
Q ss_pred ccccccCChhH-----------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEE-----------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~-----------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+-.++.++|+. ...++.+..=+|++ ||.++.+..+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 22223333332 24567788889998 89888876443
No 206
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.51 E-value=0.003 Score=58.01 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=75.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCC--C-CceEEEeccccccCChh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAI--P-PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~--~-~~D~i~~~~vlh~~~~~ 274 (365)
+.++.++|||||++|.++..|+++ +.+++++|..++........+|++..+|.+... + ++|.++|--+.. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H
Confidence 467899999999999999999998 669999998777666666899999999988833 2 489998866542 2
Q ss_pred HHHHHHHHHHHhcccCCCC-cEEEEEeeecCCCc
Q 017835 275 ECVKILKNCKKAIAINGKA-GKVIIIDIKMESEK 307 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~g-G~lli~e~~~~~~~ 307 (365)
.++.+-+.+.|.. | .+-.|+...++...
T Consensus 283 --~rva~lm~~Wl~~---g~cr~aIfnLKlpmk~ 311 (357)
T PRK11760 283 --ARVAELMAQWLVN---GWCREAIFNLKLPMKK 311 (357)
T ss_pred --HHHHHHHHHHHhc---CcccEEEEEEEcCCCC
Confidence 3566777778875 3 35666666665543
No 207
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0013 Score=57.94 Aligned_cols=105 Identities=15% Similarity=0.240 Sum_probs=75.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-IP 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~~ 257 (365)
..++..++ ..++.+||+-|.|+|.++.++++. .|.-++.-+|. ..-.+.+.+ .+++++...|+... +.
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 34556666 899999999999999999999998 58889999998 333334432 78999999999873 32
Q ss_pred ----CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 258 ----PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 258 ----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.+|.|++ +++.+ ...+-.++++|+. .||++.-+.++.
T Consensus 173 ~ks~~aDaVFL-----DlPaP--w~AiPha~~~lk~--~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAP--WEAIPHAAKILKD--EGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCCh--hhhhhhhHHHhhh--cCceEEeccHHH
Confidence 3898877 44544 4456667778886 155666555443
No 208
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.46 E-value=0.00058 Score=64.76 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--C-CCCceEEEecccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--A-IPPADAVLIKCVLHN 270 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~~~~D~i~~~~vlh~ 270 (365)
..+|||++||+|.+++.++...+..+++++|. +..++.+++ ..++++..+|... . ...||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998876568999999 888887764 3456688888765 2 23599998843 1
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
..+ ..++..+.+.+++ ||.|+|.
T Consensus 135 -Gs~--~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcC---CCEEEEE
Confidence 222 4577776777888 8888887
No 209
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00015 Score=65.78 Aligned_cols=102 Identities=18% Similarity=0.357 Sum_probs=67.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEeechHHHHhccc-------CCCeEEEeCCCCC---CCCCceEEEeccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIE-CTVFDQPHVVADLKS-------NGNLKYVGGNMFE---AIPPADAVLIKCVLH 269 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~---~~~~~D~i~~~~vlh 269 (365)
.++|||||.|.|.-+.++-.-+|+++ ++.++....+..... .........|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46799999999999988888899985 566666333332221 1222223344443 466666666655555
Q ss_pred cC----ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 270 NW----NDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 270 ~~----~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.+ ........++++.+.+.| ||.|+|+|.-.+.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCch
Confidence 43 233445589999999999 9999999975544
No 210
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.0015 Score=54.51 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=85.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHh-----------ccc--CCCeEEEeCCCCC-CCC-CceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVAD-----------LKS--NGNLKYVGGNMFE-AIP-PADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~-----------a~~--~~~i~~~~~d~~~-~~~-~~D~ 261 (365)
++++.+|+|+=.|.|.++.-+...- |.-.+..+-..+.... +++ ..+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 7899999999999999998887753 4334443322222111 111 3455555544444 223 4777
Q ss_pred EEeccccccC-----ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 262 VLIKCVLHNW-----NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 262 i~~~~vlh~~-----~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
++....-|++ ...-+.++.+.++++||| ||.++|.|+......... ... . .+ .++...
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~--~--------~~-ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTI--T--------LH-RIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhh--h--------hc-ccChHH
Confidence 7664333322 344567899999999999 999999998876544321 100 0 01 125667
Q ss_pred HHHHHHhcCCccceEEEc
Q 017835 337 WAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~ 354 (365)
..+..+.+||+...-..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 777889999987644433
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.40 E-value=0.00066 Score=61.21 Aligned_cols=92 Identities=16% Similarity=0.335 Sum_probs=65.6
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC--
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP-- 258 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~-- 258 (365)
...+++.++ ..+...|||||+|.|.++..|++.. .+++++|. +..++..++ .++++++.+|+.+ +.+.
T Consensus 19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 355666666 6688999999999999999999996 68888888 777776665 5899999999998 3332
Q ss_pred --ceEEEeccccccCChhHHHHHHHHHHHh
Q 017835 259 --ADAVLIKCVLHNWNDEECVKILKNCKKA 286 (365)
Q Consensus 259 --~D~i~~~~vlh~~~~~~~~~~L~~i~~~ 286 (365)
-.+.++.+.-++.+. .++.++...
T Consensus 95 ~~~~~~vv~NlPy~is~----~il~~ll~~ 120 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISS----PILRKLLEL 120 (262)
T ss_dssp SSSEEEEEEEETGTGHH----HHHHHHHHH
T ss_pred cCCceEEEEEecccchH----HHHHHHhhc
Confidence 344455555444443 455555553
No 212
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.39 E-value=0.00023 Score=60.36 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHHhhcccc-ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCCC---------C
Q 017835 188 SALIHKCKDV-FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA---------I 256 (365)
Q Consensus 188 ~~~~~~~~~~-~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~ 256 (365)
.++.+.++.. ..+..++||+||++|.++..++++. +..+++++|+..+ .....+..+.+|+.++ .
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhhhhc
Confidence 3455555511 1246999999999999999999987 6789999998444 1124555555555441 1
Q ss_pred ----CCceEEEecccc---ccC------ChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 257 ----PPADAVLIKCVL---HNW------NDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 257 ----~~~D~i~~~~vl---h~~------~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..+|+|++--.. .+. ....+...|.-+.+.|+| ||.+++--
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 258999885422 111 122334445555567899 78776643
No 213
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.31 E-value=0.00075 Score=54.73 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=58.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCCC--CCCceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFEA--IPPADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~--~~~~D~ 261 (365)
..+..+|+|+|||.|.++..|+.. .++.+++++|. +...+.+.. ..++++..+++.+. ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 367889999999999999999982 27899999998 666665543 25666666666542 234777
Q ss_pred EEeccccccCChhHHHHHHHHHHH
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKK 285 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~ 285 (365)
++.-|..-.+++. +|+...+
T Consensus 103 ~vgLHaCG~Ls~~----~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSDR----ALRLFIR 122 (141)
T ss_pred EEEeecccchHHH----HHHHHHH
Confidence 7777776655553 4444444
No 214
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.0018 Score=53.81 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=67.2
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeC-CCCCC---------CCC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGG-NMFEA---------IPP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~-d~~~~---------~~~ 258 (365)
+-+++. .+++..+|||+||..|.++.-..++. |+-.+.++|+.+... ...+.++.+ |+.+| .|+
T Consensus 60 indKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 60 INDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 344554 46889999999999999999888775 999999999854433 355566666 66653 243
Q ss_pred --ceEEEecccccc----------CChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 --ADAVLIKCVLHN----------WNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 --~D~i~~~~vlh~----------~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.|+|++-. .++ -.-+-|..+|.-....+.| +|.+++--+
T Consensus 135 r~VdvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~w 185 (232)
T KOG4589|consen 135 RPVDVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKLW 185 (232)
T ss_pred CcccEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEEe
Confidence 78876632 222 1223444555444556677 777776444
No 215
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.26 E-value=0.002 Score=57.88 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=57.0
Q ss_pred CCCeEEEecCCccHHHHH-HHHH-CCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCC---CCCCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLASA-IAKK-FPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE---AIPPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~---~~~~~D~i~~~ 265 (365)
...+|+=||||.=-++.- |++. .++..++++|. +...+.+++ ..+++|+.+|..+ +..+||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999998766544 4443 46788999999 777777653 6899999999876 24579999987
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.... .+.++-.++|.++.+.++| |..|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 7664 2333448999999999999 6766664
No 216
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.21 E-value=0.00042 Score=65.20 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=43.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
.+|||++||+|.++..|++.. .+++++|. +.+++.+++ ..+++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 479999999999999999886 38999999 888888775 3478999999865
No 217
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.20 E-value=0.00045 Score=64.62 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=82.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..+...++|+|||.|.....+... ..+.++++|. +..+.+... .....++.+|+.+ +++ .+|.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 455668999999999998877764 5678899987 555555442 4555568889988 566 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
+..|.++. ..++++++++++| ||..++.|++.....
T Consensus 187 ~~~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 187 VVCHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTAKL 222 (364)
T ss_pred ecccCCcH--HHHHHHHhcccCC---CceEEeHHHHHhhhc
Confidence 99999987 7889999999999 899998888775443
No 218
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.19 E-value=0.015 Score=49.85 Aligned_cols=129 Identities=13% Similarity=0.153 Sum_probs=92.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP---PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~---~~D~i~~~~v 267 (365)
+.+.++.||||-.|.+.+.|.+.++..+++..|. +..++.|.+ .+++++..+|-+.++. ..|++++..+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 4455699999999999999999999999999998 666665543 7899999999988643 4899988653
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
.-.-..++|.+-.+-|+. =-++++ -+ --...++++||.+.+|.
T Consensus 95 ----GG~lI~~ILee~~~~l~~---~~rlIL-QP-----------------------------n~~~~~LR~~L~~~~~~ 137 (226)
T COG2384 95 ----GGTLIREILEEGKEKLKG---VERLIL-QP-----------------------------NIHTYELREWLSANSYE 137 (226)
T ss_pred ----cHHHHHHHHHHhhhhhcC---cceEEE-CC-----------------------------CCCHHHHHHHHHhCCce
Confidence 455567888887777763 123333 11 11456788889999998
Q ss_pred cceEEEcC--C-ceeEEEEe
Q 017835 348 DYKITDVL--G-VRSLIEVY 364 (365)
Q Consensus 348 ~~~~~~~~--~-~~~vi~~~ 364 (365)
+..=.-+. + .|-+|.+.
T Consensus 138 I~~E~ileE~~kiYEIlv~e 157 (226)
T COG2384 138 IKAETILEEDGKIYEILVVE 157 (226)
T ss_pred eeeeeeecccCeEEEEEEEe
Confidence 76444442 3 36666654
No 219
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.19 E-value=0.00016 Score=47.68 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=39.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+.|++.|...++++|+.|||+++|+ +...+.|+|..|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 3567778876577899999999999 578999999999999999975
No 220
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.19 E-value=0.00093 Score=57.31 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=64.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC--CCceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI--PPADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~--~~~D~i~~~~v 267 (365)
..++.+|+|.-||.|.+++.+++..+..+++..|+ |..++.+++ ..+|....+|..+-. ..+|-|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45678999999999999999999777889999999 888877664 678999999987732 34898888542
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEE
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKV 296 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~l 296 (365)
- .+.++|..+.+.+++ ||.+
T Consensus 179 ~------~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEE
T ss_pred H------HHHHHHHHHHHHhcC---CcEE
Confidence 2 234678888899998 5543
No 221
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.18 E-value=0.0026 Score=58.22 Aligned_cols=93 Identities=19% Similarity=0.397 Sum_probs=72.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCCCC----CCc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFEAI----PPA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~~----~~~ 259 (365)
++..++|-+|||-|..+.++.+ +|+ -+++.+|+ |.|++.++. ..|++++..|.++-. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999886 574 47899999 999998872 679999999999832 249
Q ss_pred eEEEeccccccCChhH--------HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 260 DAVLIKCVLHNWNDEE--------CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~--------~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
|+++.- ++|+. ..++-+-+++.|++ +|.+++..
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa 407 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA 407 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec
Confidence 998873 33332 24667778889998 78777754
No 222
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.17 E-value=0.00084 Score=55.67 Aligned_cols=97 Identities=18% Similarity=0.290 Sum_probs=73.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCCCceEEEeccccccCCh
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIPPADAVLIKCVLHNWND 273 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~ 273 (365)
..+.|+|.|+|-++.-.+++ .-+++.++. |.....+++ ..+++++.+|..+ .+..+|+|+|-..=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 68999999999998766665 448899988 777666664 5789999999998 7878999988533222234
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+..+.+++.+-.-|+- +++++-.+...
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v~~ 138 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEVRI 138 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHHhh
Confidence 4447888888888887 68877655433
No 223
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.13 E-value=0.0068 Score=54.44 Aligned_cols=146 Identities=16% Similarity=0.082 Sum_probs=95.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCCC----------C-C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEAI----------P-P 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~-~ 258 (365)
.+...||.+|||-=.....+... +++++.-+|.|++++.-++ ..+.+++..|+...+ + .
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999998887776432 3688888999988875442 468899999997421 1 1
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchh-hhhhhhhhh--hhccCccccCHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE-TQLFMDMLM--MVLVKGEERNEK 335 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~d~~~--~~~~~~~~~t~~ 335 (365)
.-++++-.++.+++.+++.++|+.+.+...| |..+++|.+.+-.... ... ......... ....-.-..+.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEW--RAGMRAPVYHAARGVDGSGLVFGIDRA 232 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhH--HHHHHHHHHHhhhcccccccccCCChh
Confidence 4577888999999999999999999998887 4555667655411110 000 000000000 000000113789
Q ss_pred HHHHHHHhcCCccceE
Q 017835 336 EWAKLFFEAGFSDYKI 351 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~ 351 (365)
++.++|++.||+....
T Consensus 233 ~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 233 DVAEWLAERGWRASEH 248 (260)
T ss_pred hHHHHHHHCCCeeecC
Confidence 9999999999998665
No 224
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.0057 Score=54.98 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=90.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec------hHHHHhcc---------------------------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ------PHVVADLK--------------------------------- 240 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~--------------------------------- 240 (365)
...+||-=|||.|.++..|+..++.+++--+.. .-++...+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 367999999999999999999988776632211 00110000
Q ss_pred ------cCCCeEEEeCCCCC--CCC----CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCcc
Q 017835 241 ------SNGNLKYVGGNMFE--AIP----PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA 308 (365)
Q Consensus 241 ------~~~~i~~~~~d~~~--~~~----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~ 308 (365)
..+..+.-.|||.+ ..+ .||+|+.++.+. .-....+.|..|.+.|+| ||..+=+-+..-+-..
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFED 304 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccC
Confidence 02234446688887 222 399998886664 344568999999999999 8877766665544332
Q ss_pred CccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 309 ~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.+-. . .-.+-+.+.+++.++.+.-||++++-..+
T Consensus 305 ~~g~-------~-----~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 305 THGV-------E-----NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred CCCC-------c-----ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 2100 0 01134558999999999999998765533
No 225
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.10 E-value=0.0057 Score=49.63 Aligned_cols=95 Identities=20% Similarity=0.324 Sum_probs=64.3
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-C--CC---eEEEeCCCCC---CCC---CceEEEeccccc
Q 017835 204 LVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-N--GN---LKYVGGNMFE---AIP---PADAVLIKCVLH 269 (365)
Q Consensus 204 iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~~---i~~~~~d~~~---~~~---~~D~i~~~~vlh 269 (365)
++|+|||+|... .+....+. ..++++|. +.++..... . .. +.+..+|... ++. .+|++ +....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 34443333 47888898 666665332 1 11 5777777664 333 48999 544444
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
++.. ....++++.+.++| +|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 4433 47889999999999 8888888776544
No 226
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.09 E-value=0.00054 Score=56.50 Aligned_cols=62 Identities=24% Similarity=0.430 Sum_probs=46.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---CC--C-ceEEEec
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---IP--P-ADAVLIK 265 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~~--~-~D~i~~~ 265 (365)
..|+|+-||.|..++.+++.+. +++++|+ +..++.++. .++|+++.+|+++- .. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3799999999999999999964 6889998 777777764 67999999999882 22 2 7999875
No 227
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.09 E-value=0.0017 Score=56.86 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=67.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh 269 (365)
.....+|+|||||---++.-+....|+..++++|+ ...++.... ..+.++...|..+..| .+|+.++.-++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 35589999999999999998888888999999999 777776654 5677788889998644 499999999998
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.+...+. ..--++-+.++. -.++|.-+..
T Consensus 183 ~le~q~~-g~g~~ll~~~~~----~~~vVSfPtr 211 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS----PHVVVSFPTR 211 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE----SEEEEEEES-
T ss_pred HHHHHhc-chHHHHHHHhCC----CeEEEecccc
Confidence 7765543 222334444543 3555544443
No 228
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0044 Score=53.80 Aligned_cols=101 Identities=20% Similarity=0.363 Sum_probs=73.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC----CeEEEeec-hHHHHhcc-----cCC--CeEEEeCCCCCC---CCC--ce-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH----IECTVFDQ-PHVVADLK-----SNG--NLKYVGGNMFEA---IPP--AD- 260 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~-----~~~--~i~~~~~d~~~~---~~~--~D- 260 (365)
.+...++|+|.|+..=+..|...+.. .+++-+|+ ..++.... +.. .+.-+++|+..+ .|. --
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888887755 78999998 44443321 233 344567787663 332 22
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE-Eeee
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII-IDIK 302 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli-~e~~ 302 (365)
.++....|.++++.+|..+|.+++.+|+| |-.+++ +|..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEecccc
Confidence 34567899999999999999999999999 777766 4443
No 229
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.08 E-value=0.00059 Score=64.44 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=43.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
.+|||++||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 579999999999999999875 38999999 888887764 3478999999865
No 230
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00049 Score=55.63 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=66.0
Q ss_pred CCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCCC-----CCCceEEE
Q 017835 200 GLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFEA-----IPPADAVL 263 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~-----~~~~D~i~ 263 (365)
.+.+||++|+|--.+ ++.++..-|...+-..|- ...++..++ ..++.++.-+.... +..||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 357999999996555 444555668888888886 444544442 23444444444432 12499999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
+...+. =++....+.+.|+..|+| .|+-+++.+.
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p---~g~Al~fsPR 142 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRP---SGRALLFSPR 142 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCc---ccceeEecCc
Confidence 998874 455567899999999999 6776665543
No 231
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.041 Score=46.51 Aligned_cols=140 Identities=13% Similarity=0.122 Sum_probs=94.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH----HHhcccCCCeEEEeCCCCCCCC------CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHV----VADLKSNGNLKYVGGNMFEAIP------PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~i~~~~~d~~~~~~------~~D~i~~~~ 266 (365)
++++.+||=+|..+|.....+....++-.+.+++. +.+ +..+++..|+--+-+|...|.. ..|+|+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 78999999999999999999999888767777776 443 4445557888888889888642 4788865
Q ss_pred ccccCC-hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 267 VLHNWN-DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 267 vlh~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
+.. +.++.-+..++..-|++ ||.+++.=-..+-+....+ ...+ .++ ..-|++.|
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp----~~vf--------------~~e-v~kL~~~~ 206 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTADP----EEVF--------------KDE-VEKLEEGG 206 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCCH----HHHH--------------HHH-HHHHHhcC
Confidence 333 33455566688889998 7766664433332222110 0111 223 34568889
Q ss_pred CccceEEEcCCc---eeEEEEe
Q 017835 346 FSDYKITDVLGV---RSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~~ 364 (365)
|++.++..+..+ +.+|.++
T Consensus 207 f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred ceeeEEeccCCcccceEEEEEe
Confidence 999999888433 6666654
No 232
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.00 E-value=0.009 Score=58.15 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=72.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CCC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AIP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~~-~~D~i~~~ 265 (365)
..++.+|||+++|.|.=+..++....+ ..++..|+ +.-+..+++ ..++.+...|... ..+ .||.|++-
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467889999999999999999998643 57888998 555554442 4667888888664 234 49999852
Q ss_pred c------cc-------ccCChhHH-------HHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 C------VL-------HNWNDEEC-------VKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ~------vl-------h~~~~~~~-------~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
- ++ ..|+.+.. .++|+++.+.||| ||+|+-.....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCC
Confidence 2 22 22333222 6899999999999 88886655443
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.91 E-value=0.003 Score=51.11 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=43.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
+|+|||||.|.++..+++.+|..+++++|. |.+.+.+++ ..+++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 888877664 2457777776654
No 234
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0011 Score=52.72 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=51.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--C-ceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--P-ADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~-~D~i~~~~vl 268 (365)
-.+++++|+|||.|.+.++... +..-.++|+|+ |+.++.+.+ .-++.+.+.|+.+..+ . ||..++.--+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3578999999999999844332 23346899999 999998875 3466788888888533 2 8998887655
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.91 E-value=0.0048 Score=51.76 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=68.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCCCceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIPPADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~ 271 (365)
.-.+++|||+|.|+|..++.-++.. ...++..|. |.....++- .-.|.+...|..-+.+.+|+++...++++-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 3457899999999999998877763 234555566 443333331 345677777877755579999999999754
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
..+.+++. ....++. +|..++|.++-.+.
T Consensus 156 --~~a~~l~~-~~~~l~~--~g~~vlvgdp~R~~ 184 (218)
T COG3897 156 --TEADRLIP-WKDRLAE--AGAAVLVGDPGRAY 184 (218)
T ss_pred --hHHHHHHH-HHHHHHh--CCCEEEEeCCCCCC
Confidence 44466777 5555554 16778877765544
No 236
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.78 E-value=0.0096 Score=50.35 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=62.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC-C-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIE---------CTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI-P- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-~- 257 (365)
.+++..|+|-=||+|.++++.+...++.. +++.|. +.+++.++. ...+.+...|+.+ +. +
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 46778999999999999999888777766 899999 888887764 4578999999988 53 3
Q ss_pred CceEEEecccccc-CCh-hH----HHHHHHHHHHhccc
Q 017835 258 PADAVLIKCVLHN-WND-EE----CVKILKNCKKAIAI 289 (365)
Q Consensus 258 ~~D~i~~~~vlh~-~~~-~~----~~~~L~~i~~~L~p 289 (365)
.+|+|++.--... ... .+ -.++++++++++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 4899998644332 122 11 23556777788886
No 237
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.75 E-value=0.046 Score=47.19 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=84.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HHHhcccCCCeEEEeCCCCCCC------CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PH----VVADLKSNGNLKYVGGNMFEAI------PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~~~~------~~~D~i~~~ 265 (365)
++++.+||-+|.++|.....+...- |+-.+.+++. +. .+..+++..||--+-.|...|. +..|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 7889999999999999999999874 4778888887 53 4455666889988889998853 248888763
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
- -+ + +++.-++.++...||+ ||.+++.=-...-+.... . .. ...+=.+-|++.|
T Consensus 151 V-aQ--p-~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~---p-~~---------------vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 V-AQ--P-DQARIAALNARHFLKP---GGHLIISIKARSIDSTAD---P-EE---------------VFAEEVKKLKEEG 204 (229)
T ss_dssp --SS--T-THHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSS---H-HH---------------HHHHHHHHHHCTT
T ss_pred C-CC--h-HHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCC---H-HH---------------HHHHHHHHHHHcC
Confidence 2 21 3 3556677788899999 888887532211111100 0 00 1122234568889
Q ss_pred CccceEEEcCC
Q 017835 346 FSDYKITDVLG 356 (365)
Q Consensus 346 f~~~~~~~~~~ 356 (365)
|++.+...+..
T Consensus 205 ~~~~e~i~LeP 215 (229)
T PF01269_consen 205 FKPLEQITLEP 215 (229)
T ss_dssp CEEEEEEE-TT
T ss_pred CChheEeccCC
Confidence 99998888843
No 238
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.66 E-value=0.011 Score=54.61 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCC--CCC--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-------FPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE--AIP-- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~--~~~-- 257 (365)
..+..+|+|-.||+|.++.++.+. .+..++.|+|. +.++..++. .....+..+|.+. ...
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456779999999999999988874 47789999999 666655442 3345688888887 222
Q ss_pred -CceEEEecccc--ccCCh-----------------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 -PADAVLIKCVL--HNWND-----------------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 -~~D~i~~~~vl--h~~~~-----------------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++.--+ ..|.+ ..-..++..+.+.|++ ||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence 59999986222 21111 1113578889999999 898776543
No 239
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.64 E-value=0.004 Score=56.30 Aligned_cols=99 Identities=20% Similarity=0.334 Sum_probs=73.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHHHhccc---------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKF--------------------PHIECTVFDQ---PHVVADLKS--------------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~--------------- 241 (365)
+..+||-||||.|.=..+|+..+ +.++++.+|+ ..++.....
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999998877777665 2257899997 556655431
Q ss_pred --------CCCeEEEeCCCCCC-C---------CCceEEEeccccccC---ChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 242 --------NGNLKYVGGNMFEA-I---------PPADAVLIKCVLHNW---NDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 242 --------~~~i~~~~~d~~~~-~---------~~~D~i~~~~vlh~~---~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.-+++|.+.|+++. . +..++|.+.++++.+ +..+..++|.++-..++| |..|+|+|
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvD 242 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVD 242 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEc
Confidence 22578899999982 1 236888887777543 456778999999999999 88888888
Q ss_pred e
Q 017835 301 I 301 (365)
Q Consensus 301 ~ 301 (365)
.
T Consensus 243 S 243 (315)
T PF11312_consen 243 S 243 (315)
T ss_pred C
Confidence 5
No 240
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.62 E-value=0.0018 Score=48.05 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=46.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...+++.|+.+||+.+++ +...+.+.|+.|...|++.+... ++.|++++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-----~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-----NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-----CCceeecHHH
Confidence 4456667653368999999999999 57899999999999999998641 4678887643
No 241
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.62 E-value=0.0098 Score=54.31 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-C--C--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-A--I-- 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~-- 256 (365)
.++++.+. ..++..+||.=+|.|+.+..+++..|+.+++++|. +.+++.+++ ..|++++.+++.+ . .
T Consensus 10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 45666665 56778999999999999999999987799999999 888888764 3589999988876 1 1
Q ss_pred ---CCceEEEec
Q 017835 257 ---PPADAVLIK 265 (365)
Q Consensus 257 ---~~~D~i~~~ 265 (365)
..+|.|++-
T Consensus 88 ~~~~~vDgIl~D 99 (305)
T TIGR00006 88 LLVTKIDGILVD 99 (305)
T ss_pred cCCCcccEEEEe
Confidence 236776664
No 242
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.60 E-value=0.011 Score=50.15 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=67.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C----CCceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I----PPADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~----~~~D~i~~ 264 (365)
.+.++||+=||+|.++++.+.+. -.+++.+|. +..+..+++ .++++++..|.+.. . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46899999999999999988884 247899998 666666654 45789999997652 1 25999988
Q ss_pred ccccccCChhHHHHHHHHHH--HhcccCCCCcEEEEEeeecC
Q 017835 265 KCVLHNWNDEECVKILKNCK--KAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~--~~L~p~~~gG~lli~e~~~~ 304 (365)
---.. .... ..+++..+. ..|++ +.++|+|....
T Consensus 121 DPPY~-~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYA-KGLY-YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STT-SCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcc-cchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 64332 1211 356677776 68888 67888887655
No 243
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.51 E-value=0.0014 Score=44.79 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+++|.--.++.|+..|.. ++|.|+.+||+.+|+ +...+.+-|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 344445566777777732 389999999999999 5788999999999999999875
No 244
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.51 E-value=0.029 Score=57.83 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=73.7
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC----C--------------------------------------C
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF----P--------------------------------------H 224 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p--------------------------------------~ 224 (365)
+..++....| .++...++|-.||+|.++++.+... | .
T Consensus 178 Aaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 3444444442 2457899999999999998876531 1 2
Q ss_pred CeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC----CceEEEeccccc-cCC-hhHHHHHHHHHHHhcc-
Q 017835 225 IECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP----PADAVLIKCVLH-NWN-DEECVKILKNCKKAIA- 288 (365)
Q Consensus 225 ~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~----~~D~i~~~~vlh-~~~-~~~~~~~L~~i~~~L~- 288 (365)
.+++++|+ +.+++.++. .+++.+..+|+.+ +.+ .+|+|+++--.. .+. .++..++.+.+.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36899999 888888775 4578999999987 322 389998873332 122 2344555555555554
Q ss_pred --cCCCCcEEEEEee
Q 017835 289 --INGKAGKVIIIDI 301 (365)
Q Consensus 289 --p~~~gG~lli~e~ 301 (365)
| |+++.++..
T Consensus 337 ~~~---g~~~~llt~ 348 (702)
T PRK11783 337 QFG---GWNAALFSS 348 (702)
T ss_pred hCC---CCeEEEEeC
Confidence 6 788877654
No 245
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.47 E-value=0.014 Score=58.03 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=47.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHHHhccc----C--CCeEEEeCCCCCC--------C
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPH--------IECTVFDQ-PHVVADLKS----N--GNLKYVGGNMFEA--------I 256 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~----~--~~i~~~~~d~~~~--------~ 256 (365)
...+|+|.+||+|.++..++...+. ..++++|+ +..+..++. . ..+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 56789998 666666653 1 2455666665541 1
Q ss_pred CCceEEEec
Q 017835 257 PPADAVLIK 265 (365)
Q Consensus 257 ~~~D~i~~~ 265 (365)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 359999986
No 246
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.46 E-value=0.037 Score=47.80 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhcc-------cCCCeEEEeCCCCCCC---------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLK-------SNGNLKYVGGNMFEAI---------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~~~---------~~~ 259 (365)
+-+++++||||.=+|.-+.+++...|. .+++.+|. +...+... -...|+++.+...+.+ ..|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 456789999999999999999998865 58888887 44444433 2788999999887731 248
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|.+++- +|-+. -.....++.+.+|+ || ++++|.++
T Consensus 151 DfaFvD----adK~n-Y~~y~e~~l~Llr~---GG-vi~~DNvl 185 (237)
T KOG1663|consen 151 DFAFVD----ADKDN-YSNYYERLLRLLRV---GG-VIVVDNVL 185 (237)
T ss_pred eEEEEc----cchHH-HHHHHHHHHhhccc---cc-EEEEeccc
Confidence 988763 34444 35888999999999 55 55555533
No 247
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.39 E-value=0.01 Score=43.31 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+.|.++||+++++ ++..++++++.|...|+++... |.+|.|.++...+
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~----G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR----GRGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET----STTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC----CCCCceeecCCHH
Confidence 46999999999999 5799999999999999998765 2258899886544
No 248
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.38 E-value=0.0045 Score=43.26 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=46.0
Q ss_pred HHcCcccccccCCC-CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 40 IQLGIPDIIHNHAK-PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 40 ~~lglf~~L~~~~~-~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
.+-.|++.|...++ ++|+.+||+.+|+ +...+++.|.-|...|++...+.. ++.|+++.
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~~----~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGGT----PPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC----CCceEeec
Confidence 44566777776533 3999999999999 568899999999999999986521 46777764
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.24 E-value=0.0046 Score=47.30 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=38.0
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeec-h---HHHHhccc---CCCeEEEeCCCCCC---C--CCceEEEeccccc
Q 017835 205 VDVGGGTGTLASAIAKKFPHI---ECTVFDQ-P---HVVADLKS---NGNLKYVGGNMFEA---I--PPADAVLIKCVLH 269 (365)
Q Consensus 205 LDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~~---~--~~~D~i~~~~vlh 269 (365)
||||+..|..+..+++..+.. +++++|. + ...+..++ ..+++++.++..+- + ..+|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988876554 6899998 5 23333332 67899999998762 3 3589988843 22
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
..+.+..-++.+.+.|+| ||.+++
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~ 103 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVF 103 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEE
Confidence 234567788999999999 665554
No 250
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.18 E-value=0.0026 Score=40.88 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=37.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL 89 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 89 (365)
++.|...|.+ ++.++.||++.+++ +...+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 4456666775 89999999999999 67999999999999999874
No 251
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=96.11 E-value=0.014 Score=48.46 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
-++|++++.+. |. .. +++.|+++||+..++ ++..++++|+.|...|++..... .+|.|.+..-..
T Consensus 8 ~yAl~~l~~lA-~~--~~-~~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~rG----~~GGy~Lar~p~ 72 (164)
T PRK10857 8 RYAVTAMLDVA-LN--SE-AGPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVRG----PGGGYLLGKDAS 72 (164)
T ss_pred HHHHHHHHHHH-hC--CC-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC----CCCCeeccCCHH
Confidence 35666666666 21 21 268999999999999 57999999999999999998642 257899876443
No 252
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.11 E-value=0.045 Score=46.72 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=74.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-----CCCeEEEeCCCCC---CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-----NGNLKYVGGNMFE---AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~i~~~~~d~~~---~~~--~~D~i~~~~v 267 (365)
..++.+||.||-|-|-....+.++-|..+.++---|.+.++.+. ..+|.+..|-..+ .++ .||-|+.--.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 36789999999999999999998888766655333888888875 5778777775444 344 4888876432
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
-.+ -++...+.+.+.+.||| +|.+-.+....
T Consensus 179 ~e~--yEdl~~~hqh~~rLLkP---~gv~SyfNg~~ 209 (271)
T KOG1709|consen 179 SEL--YEDLRHFHQHVVRLLKP---EGVFSYFNGLG 209 (271)
T ss_pred hhH--HHHHHHHHHHHhhhcCC---CceEEEecCcc
Confidence 221 24558888999999999 88877766544
No 253
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.058 Score=48.68 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=102.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeechHHHHhccc----------------------------CCCeEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQPHVVADLKS----------------------------NGNLKY 247 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----------------------------~~~i~~ 247 (365)
......|+.+|||.-.+...|...+ +.++++-+|.|.+++.--. ..+..+
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3567899999999999999999987 7788999998776653210 345566
Q ss_pred EeCCCCC--CC----------CC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchh
Q 017835 248 VGGNMFE--AI----------PP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE 314 (365)
Q Consensus 248 ~~~d~~~--~~----------~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 314 (365)
...|+.+ .+ .+ .-++++-.+|-++++++...+++-+.+...- +.+++.|.+.+.+....
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~---- 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGK---- 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHH----
Confidence 6666664 11 11 3455667888889999999999999999874 89999999986654321
Q ss_pred hhhhhhhhhh--hc-cC--ccccCHHHHHHHHHhcCCccceEEEc
Q 017835 315 TQLFMDMLMM--VL-VK--GEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 315 ~~~~~d~~~~--~~-~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.+--+.. .. .. ...-|.+..++-+.++||.-+.+..+
T Consensus 237 ---vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 ---VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ---HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 1111111 00 01 12238888999999999998877655
No 254
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.05 E-value=0.0082 Score=41.71 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.++.|..+|++.+++ +...+.+.++.|...|++++....+|+....|++|+.|
T Consensus 16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 379999999999999 67899999999999999988653223222458888754
No 255
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.04 E-value=0.0055 Score=54.76 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=47.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+.|++.|.....|+|+.|||+++|+ +..-+.|+|..|+..|++.++ ++.|++++...
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~-------~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSD-------GRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-------CCEEEecHHHH
Confidence 4566677654478999999999999 468899999999999999875 57899987543
No 256
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=96.02 E-value=0.036 Score=38.19 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
.++|..+||+.+|+ +...+.+.|+.|...|++.... .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC------CCeEEeCC
Confidence 68999999999999 5789999999999999999874 37787764
No 257
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.02 E-value=0.0052 Score=54.76 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=46.8
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...+.++++.|||+++|+ +...+.|+|..|+..|+++.++. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~-----~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE-----DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEeehHHH
Confidence 4456666653345679999999999 46889999999999999999862 4689999754
No 258
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.96 E-value=0.046 Score=51.72 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=69.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC--C--CCceEEEeccccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA--I--PPADAVLIKCVLH 269 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~--~--~~~D~i~~~~vlh 269 (365)
.+|||.-||+|..+++++.+.++ -+++..|. +..++.+++ ..++++..+|...- . ..||+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999998654 47899999 888877764 34578888888762 1 3599998844 2
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..+ ..++..+.+.+++ ||.|.|.-
T Consensus 124 --Gs~--~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 124 --GTP--APFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred --CCc--HHHHHHHHHhccc---CCEEEEEe
Confidence 222 3578888888888 88888874
No 259
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.92 E-value=0.0064 Score=55.17 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=46.6
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.|++.|.+.++++|+.|||+++|+ +..-+.|+|..|+..||++.+.. .+.|++++...
T Consensus 32 ~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~ 89 (274)
T PRK11569 32 KLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-----LGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEecCHHHH
Confidence 345555543478999999999999 56889999999999999998642 58899987543
No 260
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.91 E-value=0.04 Score=52.20 Aligned_cols=96 Identities=11% Similarity=0.185 Sum_probs=73.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc--------CCCeEEEeCCCCCCC------C-CceEEE
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEAI------P-PADAVL 263 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~------~-~~D~i~ 263 (365)
+++|||+=|=||.++...+.. ++ ++|.+|+ ...++.+++ ..++.++++|.++-+ . .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 899999999999999887776 56 8999999 778888875 567899999999822 2 599999
Q ss_pred eccc-cc-----cCC-hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCV-LH-----NWN-DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~v-lh-----~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+--- +- -|+ ..+-..++..+.+.|+| ||.++++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~ 337 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSC 337 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 8311 10 122 12336788899999999 888888664
No 261
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.87 E-value=0.0072 Score=54.73 Aligned_cols=58 Identities=9% Similarity=0.213 Sum_probs=46.6
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|..|+..|++..+.. .+.|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ-----LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEEecHHH
Confidence 3455555544468999999999999 56889999999999999988642 5789998744
No 262
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=95.86 E-value=0.0078 Score=46.82 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 31 VNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 31 ~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
..+++|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+++.... |..-.|++.+
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r~---Gr~~~Y~l~~ 75 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRKQ---GKWVHYRLSP 75 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE---cCEEEEEECc
Confidence 456667777788888888642 68999999999999 56889999999999999998762 1123477765
No 263
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.023 Score=54.72 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=65.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--C-CC---CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--A-IP---PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~~---~~D~i~~ 264 (365)
..+..+++|+=||.|.++..|+++ ..+++++++ ++.++.|++ -.+++|+.++..+ + .. .+|+|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999998 888888875 4569999999887 2 21 4799887
Q ss_pred ccccccCChhHHH-HHHHHHHHhcccCCCCcEEEEE
Q 017835 265 KCVLHNWNDEECV-KILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 265 ~~vlh~~~~~~~~-~~L~~i~~~L~p~~~gG~lli~ 299 (365)
- -|..-+. .+++.+.+.-.+ ..++|.
T Consensus 369 D-----PPR~G~~~~~lk~l~~~~p~----~IvYVS 395 (432)
T COG2265 369 D-----PPRAGADREVLKQLAKLKPK----RIVYVS 395 (432)
T ss_pred C-----CCCCCCCHHHHHHHHhcCCC----cEEEEe
Confidence 2 2222223 566666555433 566664
No 264
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.73 E-value=0.058 Score=49.36 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=93.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCC-CCC------C----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFE-AIP------P---- 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~-~~~------~---- 258 (365)
.+...||-+|||-=.-+.++-.. +++++.-+|.|++++.-++ ..++++++.|+.+ +++ +
T Consensus 91 ~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 34789999999966555444322 2578888999999987553 3489999999995 332 1
Q ss_pred -ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc-chhhhhhhhhhh-hhccCccccCHH
Q 017835 259 -ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK-TTETQLFMDMLM-MVLVKGEERNEK 335 (365)
Q Consensus 259 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~-~~~~~~~~d~~~-~~~~~~~~~t~~ 335 (365)
.-++++-.++-+++.+++.++|+.|...+.| |..++.............. ............ ............
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 246 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHH
Confidence 3567888999999999999999999999998 5555544321211110000 000000000000 000111223678
Q ss_pred HHHHHHHhcCCccceE
Q 017835 336 EWAKLFFEAGFSDYKI 351 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~ 351 (365)
++..++.+.||.....
T Consensus 247 e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 247 EIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhcCEEEEec
Confidence 9999999999987665
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.66 E-value=0.043 Score=52.79 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=63.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCe---EEEeechHHHHhcccCCCeEEEeCCCCCC---CC-CceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIE---CTVFDQPHVVADLKSNGNLKYVGGNMFEA---IP-PADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---~~-~~D~i~~~~vlh~~ 271 (365)
..-+.|+|...|.|.++.+|.+. | +- ++-.+-+..+...-...-| -+-.|.-++ .| .||++.+.+++..+
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLI-G~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLI-GVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccc-hhccchhhccCCCCcchhheehhhhhhhh
Confidence 45689999999999999999764 2 21 2222223333333211111 123344444 44 49999999999877
Q ss_pred Chh-HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 272 NDE-ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 272 ~~~-~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+. +...+|-++-|.|+| ||.++|-|.
T Consensus 441 ~~rC~~~~illEmDRILRP---~G~~iiRD~ 468 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRP---GGWVIIRDT 468 (506)
T ss_pred cccccHHHHHHHhHhhcCC---CceEEEecc
Confidence 543 457889999999999 899988653
No 266
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.63 E-value=0.052 Score=46.49 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCCeEEEecCCccHHHHHHHH---HC-CCCeEEEeec--hHHHHhccc----CCCeEEEeCCCCCC-----C------CC
Q 017835 200 GLNTLVDVGGGTGTLASAIAK---KF-PHIECTVFDQ--PHVVADLKS----NGNLKYVGGNMFEA-----I------PP 258 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~---~~-p~~~~~~~D~--~~~~~~a~~----~~~i~~~~~d~~~~-----~------~~ 258 (365)
.+..|+++|--.|+-+..++. .+ +..+++++|+ ...-..+.+ .+||+++.||..++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 358999999988877766544 44 7889999998 233333333 48999999998773 1 11
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
..+|+ -..-|... .+.+.|+.....++| |+.++|.|....
T Consensus 112 ~vlVi-lDs~H~~~--hvl~eL~~y~plv~~---G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVI-LDSSHTHE--HVLAELEAYAPLVSP---GSYLIVEDTIIE 151 (206)
T ss_dssp SEEEE-ESS----S--SHHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred ceEEE-ECCCccHH--HHHHHHHHhCccCCC---CCEEEEEecccc
Confidence 33333 33334333 347788889999999 888888776543
No 267
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.62 E-value=0.0096 Score=44.92 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ 232 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~ 232 (365)
.+....+|||||+|.+..-|... +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 45779999999999998888876 678899985
No 268
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.088 Score=45.83 Aligned_cols=148 Identities=12% Similarity=0.142 Sum_probs=91.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhcccCCCeEEEeC-CCCCC----CC-Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ--PHVVADLKSNGNLKYVGG-NMFEA----IP-PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~i~~~~~-d~~~~----~~-~~D 260 (365)
.+++.|+ ....+..+||||..||.++..+++.. -.++.++|. ....-..+...|+..+.. |+..- +. ..|
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 4455565 34578999999999999999999873 347899997 445555666778776644 44431 22 367
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEE-EEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKV-IIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~l-li~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
++++--.+ ++. ..+|-.+...++| ++-+ +++.+-....... ........| ......-..++.+
T Consensus 147 ~~v~DvSF--ISL---~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~~--v~kkGvv~d------~~~~~~v~~~i~~ 210 (245)
T COG1189 147 LIVIDVSF--ISL---KLILPALLLLLKD---GGDLVLLVKPQFEAGREQ--VGKKGVVRD------PKLHAEVLSKIEN 210 (245)
T ss_pred eEEEEeeh--hhH---HHHHHHHHHhcCC---CceEEEEecchhhhhhhh--cCcCceecC------cchHHHHHHHHHH
Confidence 77774333 233 6788999999998 5544 3444433222111 000000000 0122235577888
Q ss_pred HHHhcCCccceEEEc
Q 017835 340 LFFEAGFSDYKITDV 354 (365)
Q Consensus 340 ll~~aGf~~~~~~~~ 354 (365)
++.+.||++..+...
T Consensus 211 ~~~~~g~~~~gl~~S 225 (245)
T COG1189 211 FAKELGFQVKGLIKS 225 (245)
T ss_pred HHhhcCcEEeeeEcc
Confidence 899999998877665
No 269
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=95.58 E-value=0.0035 Score=43.80 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..++..|-. .++.|+++||+.+|+ +...+++.|+-|...|+++..+
T Consensus 10 E~~vy~~Ll~-~~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLK-NGPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHH-HCHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 3444545543 289999999999999 5799999999999999999986
No 270
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.53 E-value=0.027 Score=35.88 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
-+.|..+||+.+++ +...+.+.|+.|...|++... .+.|.++
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~-------~~~~~i~ 48 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISRE-------GGRIVIL 48 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEe-------CCEEEEC
Confidence 47999999999999 578899999999999999876 3666643
No 271
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.50 E-value=0.012 Score=52.81 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=45.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.|++.|... +++|+.|||+++|+ +..-+.|+|+.|+..||+.+... ++.|++++...
T Consensus 18 ~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~-----~~~Y~lG~~~~ 74 (257)
T PRK15090 18 GILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE-----SEKYSLTLKLF 74 (257)
T ss_pred HHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEecHHHH
Confidence 345555543 68999999999999 56889999999999999998642 58899997543
No 272
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.48 E-value=0.011 Score=53.23 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=47.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|...|+++++.. ++.|++++...
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-----~~~Y~Lg~~~~ 72 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-----DDSFRLTLKVR 72 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-----CCcEEEcHHHH
Confidence 4456666544457999999999999 57899999999999999998742 57899997554
No 273
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.44 E-value=0.41 Score=45.32 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=45.1
Q ss_pred CCCeEEEecCCccHHHHHHH--------HH-------CCCCeEEEeechH-----HHHhcc---c------------CCC
Q 017835 200 GLNTLVDVGGGTGTLASAIA--------KK-------FPHIECTVFDQPH-----VVADLK---S------------NGN 244 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~---~------------~~~ 244 (365)
+..+|+|+|||+|.++..+. ++ -|..++..-|+|. ...... + ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46799999999997765442 22 2567777777752 111110 0 011
Q ss_pred ---eEEEeCCCCCC-CC--CceEEEeccccccCC
Q 017835 245 ---LKYVGGNMFEA-IP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 245 ---i~~~~~d~~~~-~~--~~D~i~~~~vlh~~~ 272 (365)
+.-++|.|... +| ..+++++++.||-++
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 23456788773 55 489999999998554
No 274
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.39 E-value=0.039 Score=44.30 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=48.1
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
++|++.+.+..- .. +++.|.++||+.+++ ++..++++|+.|...|++..... ..|.|.++....
T Consensus 9 YAl~~l~~La~~---~~-~~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~G----~~Ggy~l~~~~~ 72 (135)
T TIGR02010 9 YAVTAMLDLALN---AE-TGPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVRG----PGGGYQLGRPAE 72 (135)
T ss_pred HHHHHHHHHHhC---CC-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeC----CCCCEeccCCHH
Confidence 456666665432 22 258999999999999 57999999999999999987531 157798886444
No 275
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.35 E-value=0.18 Score=46.74 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=77.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--CC-CCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--AI-PPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~-~~~D~i~~~~v 267 (365)
..+.+|||.=+|.|.+++.++.... .+++.+|+ |..++.+++ ..++..+.||... +. +.+|=|++.+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 4589999999999999999998743 34999999 888887764 5568999999988 33 45999999764
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
- .+.+++..+.+.+++ ||.+...+.+..+.
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence 3 235677788888898 88888888766554
No 276
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.29 E-value=0.051 Score=49.70 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=49.9
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE 254 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~ 254 (365)
..++++.+. ..++..+||.=-|.|+.+.++++++|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 355666666 67788999999999999999999999999999999 888887764 5789999888754
No 277
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=95.13 E-value=0.016 Score=40.17 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=45.2
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCC--cchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTK--TQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~--~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
|++.|.+.+.|++..+|++.++....+ +..+++.|++|...|++.+.+ .+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC------CcccccCHHHH
Confidence 345566556899999999999764323 478999999999999888765 56677887654
No 278
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.07 E-value=0.21 Score=46.22 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=72.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeC-CCCC-CCCC--ceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGG-NMFE-AIPP--ADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~-d~~~-~~~~--~D~i~~~~ 266 (365)
..++..|||==||||.++++..-. +++++|.|+ ..|+.-++. -....+... |+.. |+++ +|.|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 467789999999999999887766 889999999 778887774 233434444 8777 7774 99998732
Q ss_pred c------cccCC-hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 267 V------LHNWN-DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 267 v------lh~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
- ..--. ++-..++|..++++|++ ||++.+.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1 11111 34457889999999999 888887554
No 279
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.00 E-value=0.13 Score=46.77 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=68.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCCC------CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEA------IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~------~~~~D~i~ 263 (365)
..+++|||+=|=||.++...+.. .-.+++.+|. ...++.+++ ..+++++..|+++. ...||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 34689999999999999876654 2347999999 778888774 46899999999872 23599999
Q ss_pred ec---cccccCC-hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IK---CVLHNWN-DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~---~vlh~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+- ..=..+. ...-.++++.+.+.|+| ||.|+....
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 83 1111121 12336788999999999 787765543
No 280
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=94.98 E-value=0.02 Score=41.02 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.+..+|+..+++ +...+.+.|+.|...|++... ++.|.+|+.|..+.
T Consensus 18 ~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 18 GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-------DGKYRLTEKGKEFL 66 (77)
T ss_dssp T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-------TTEEEE-HHHHHHH
T ss_pred CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-------CCEEEECccHHHHH
Confidence 79999999999999 689999999999999999764 69999999997433
No 281
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=94.97 E-value=0.016 Score=37.21 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=35.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCcee
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFA 88 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~ 88 (365)
+..|+..|.+. ++.|..+||+.+|+ +...+.+.|+-|...|+++
T Consensus 5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 44566777763 78999999999999 5799999999999999985
No 282
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=94.94 E-value=0.0084 Score=43.33 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=46.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCcc-ceEecCccch
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQE-EGYILTSASK 108 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~-~~y~~t~~~~ 108 (365)
+++|+..|... +..+..+|.+.+++ +...+.+.|+.|...|+++....-.++.+ -.|++|+.|+
T Consensus 2 Rl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 2 RLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred HHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 55566666642 68999999999999 57999999999999999998653222111 2499999887
No 283
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.90 E-value=0.13 Score=43.56 Aligned_cols=84 Identities=21% Similarity=0.337 Sum_probs=62.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCC-----C------CC-
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEA-----I------PP- 258 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~-----~------~~- 258 (365)
+...|+-+|||-=.....+....++++++-+|.|++++.-++ ..+.+++..|+.++ + ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 345999999999999999998878899999999998876553 23466899999972 1 22
Q ss_pred ceEEEeccccccCChhHHHHHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNC 283 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i 283 (365)
.-++++-.++.+++.+++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 5678888999999999999998876
No 284
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.88 E-value=0.25 Score=43.74 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=62.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc------------CCCeEEEeCCCCCC------CCC-ce
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS------------NGNLKYVGGNMFEA------IPP-AD 260 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~i~~~~~d~~~~------~~~-~D 260 (365)
....||++|+|+|.-++..+.. ....++.-|.+..++..+. ...+.+...+...+ .+. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4678999999999666555543 5678888888766655442 22444444433332 234 89
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+|+.+.++++-... ..++.-++..|.. ++++++.-...
T Consensus 165 lilasDvvy~~~~~--e~Lv~tla~ll~~---~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYEEESF--EGLVKTLAFLLAK---DGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeecCCcc--hhHHHHHHHHHhc---CCeEEEEEecc
Confidence 99999999754433 4566667777776 67555544433
No 285
>PHA00738 putative HTH transcription regulator
Probab=94.73 E-value=0.028 Score=42.40 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.++.|++.|.. +++.++.+|++.+++ ....+.+.|++|...|++..... |+...|++.+...
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~---Gr~vyY~Ln~~~~ 74 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKE---GRTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEECCCcc
Confidence 45667777775 247999999999999 67999999999999999999862 2234588776553
No 286
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.72 E-value=0.25 Score=41.67 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=66.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C---CCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I---PPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~---~~~D~i~~~ 265 (365)
.+.++||+=+|+|.++.+.+.++ -.+++.+|. ......+++ ..+++++..|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 46899999999999999999885 347888887 666655553 47888888888741 1 239999996
Q ss_pred ccccc-CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 CVLHN-WNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 ~vlh~-~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
--.+. +-+.+..-++-.-..+|+| +.++++|.-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 55541 1111111122224567998 56667776543
No 287
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.64 E-value=0.13 Score=47.98 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=72.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec---hHHHHhccc-------------CCCeEEEeCCCCCC------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ---PHVVADLKS-------------NGNLKYVGGNMFEA------ 255 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-------------~~~i~~~~~d~~~~------ 255 (365)
+.+....+|+|+|.|.....++.......-+|+++ |.-+..... ...+..+.+++..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 67889999999999999888777654445566654 333332221 45678899999884
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.+.+++|++.++.. +++. .-=+.++..-+++ |.+++-.++..+.
T Consensus 270 ~~eatvi~vNN~~F--dp~L-~lr~~eil~~ck~---gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF--DPEL-KLRSKEILQKCKD---GTRIISSKPLVPR 313 (419)
T ss_pred hhcceEEEEecccC--CHHH-HHhhHHHHhhCCC---cceEecccccccc
Confidence 24699999999883 4443 3334488888898 8888888887764
No 288
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.63 E-value=0.079 Score=42.19 Aligned_cols=64 Identities=16% Similarity=0.359 Sum_probs=47.1
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+|++...+.. ... +++.|.++||+.+++ ++..++++|+.|...|++..... ..+.|.++....
T Consensus 9 ~al~~l~~la~---~~~-~~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~g----~~ggy~l~~~~~ 72 (132)
T TIGR00738 9 YALRALLDLAL---NPD-EGPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVRG----PGGGYRLARPPE 72 (132)
T ss_pred HHHHHHHHHHh---CCC-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEeccC----CCCCccCCCCHH
Confidence 45555555542 132 259999999999999 57999999999999999987531 146788876554
No 289
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=94.59 E-value=0.08 Score=41.30 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=51.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
+..++..|... ++.|..+||+.+++ +...+.+.++-|...|++++.....|...-.+.+|+.+..+..
T Consensus 30 q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 30 QWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 34466666653 78999999999999 5678999999999999999865322221235999998875543
No 290
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=94.41 E-value=0.042 Score=42.97 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=39.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT 92 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~ 92 (365)
+..+|-+|-+..+|.|+++||+.++. +...+++-|+-|...|++.+++.
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 34445455422389999999999999 67889999999999999999874
No 291
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=94.31 E-value=0.099 Score=42.92 Aligned_cols=64 Identities=9% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
-+++++.+.+-.. . +.+.|+++||+..++ ++..++++|..|...|+++.... -.|.|+++...+
T Consensus 8 ~YAlr~L~~LA~~---~--~~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~rG----~~GGy~La~~p~ 71 (153)
T PRK11920 8 NYAIRMLMYCAAN---D--GKLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVRG----RNGGVRLGRPAA 71 (153)
T ss_pred hHHHHHHHHHHhC---C--CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC----CCCCeeecCCHH
Confidence 3566666666422 2 257899999999999 57999999999999999998762 257899886544
No 292
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.26 E-value=0.31 Score=46.94 Aligned_cols=96 Identities=23% Similarity=0.316 Sum_probs=69.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc-----cCCCeEEEeCCCCC-CCC--CceEEEeccccccCC-
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK-----SNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWN- 272 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~- 272 (365)
+++-+|||.-.+...+-+.. .-.++-+|. +.+++... ......+...|+.. .++ +||+++....++++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 99999999998887766642 224566666 44444332 25677888888887 555 699999999998863
Q ss_pred hh-------HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 273 DE-------ECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 273 ~~-------~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
++ .+...+.+++++++| ||+.+.+...
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~ 163 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV 163 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence 32 233567899999999 9999888874
No 293
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.20 E-value=0.036 Score=47.47 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=44.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE 254 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~ 254 (365)
....|+|.-||.|+.++.++.++| .++.+|+ |.-+..|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 567999999999999999998865 6778887 666776664 6799999999998
No 294
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=93.94 E-value=0.088 Score=43.03 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
++.|+++||+..++ ++..++++|..|...|+++-... -.|.|+|+.-.+
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~rG----~~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVRG----KGGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeecC----CCCCccCCCChH
Confidence 48999999999999 57999999999999999998763 268899886554
No 295
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=93.93 E-value=0.066 Score=40.04 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=47.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+|++.+++ +...+.+.|+-|...|++.......|.....|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 34445555542 67999999999999 568899999999999999976421111123588888776443
No 296
>PRK10742 putative methyltransferase; Provisional
Probab=93.91 E-value=0.18 Score=44.55 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=52.0
Q ss_pred HHHHhhccccccCCC--eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEEEe
Q 017835 188 SALIHKCKDVFEGLN--TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKYVG 249 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~--~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~ 249 (365)
+.+++.+. ++++. +|||.=+|.|..+..++.. +++++.+|. |.+....+. ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 34566665 56655 9999999999999999988 788999998 544443331 14677778
Q ss_pred CCCCC---CCC-CceEEEe
Q 017835 250 GNMFE---AIP-PADAVLI 264 (365)
Q Consensus 250 ~d~~~---~~~-~~D~i~~ 264 (365)
+|..+ ..+ .||+|++
T Consensus 152 ~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL 170 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE
Confidence 87766 222 4788876
No 297
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=93.83 E-value=0.077 Score=42.96 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+++.++.+||+.+++ ++..+.+.|+.|...|++.+.. .+.|++|+.|..+
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~------~~~i~LT~~G~~~ 69 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTPKGKKI 69 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec------CceEEECHHHHHH
Confidence 378999999999999 5688999999999999999764 5789999988643
No 298
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.81 E-value=0.33 Score=43.92 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=55.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc-----CCCeEEEeCCCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE 254 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~ 254 (365)
++.++.+. ..+....+|.-=|.|+.+..+++++|.. +++++|. |.+++.+++ .+|++++.++|.+
T Consensus 13 ~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 45666666 6777999999999999999999999866 4999999 999998886 5699999998765
No 299
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.81 E-value=0.059 Score=41.00 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=43.5
Q ss_pred CceEEEecccc---c-cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC
Q 017835 258 PADAVLIKCVL---H-NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 258 ~~D~i~~~~vl---h-~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
.||+|+|..|- | +|.|+-...+|+++++.|+| |.++|+|+-.-........ ...... -+ ...-...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEpQ~w~sY~~~~~-~~~~~~-~n----~~~i~lr 70 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEPQPWKSYKKAKR-LSEEIR-EN----YKSIKLR 70 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE---HHHHHTTTT-S-HHHH-HH----HHH----
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeCCCcHHHHHHhh-hhHHHH-hH----HhceEEC
Confidence 38999987664 2 46788899999999999999 5666667543111110000 000000 00 0111124
Q ss_pred HHHHHHHHHh--cCCccceEEEc
Q 017835 334 EKEWAKLFFE--AGFSDYKITDV 354 (365)
Q Consensus 334 ~~e~~~ll~~--aGf~~~~~~~~ 354 (365)
.+++.++|.+ .||+..+....
T Consensus 71 P~~F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 71 PDQFEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp GGGHHHHHTSTTT---EEEEE--
T ss_pred hHHHHHHHHhcccceEEEEEccc
Confidence 4567787777 69998765554
No 300
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.73 E-value=0.76 Score=43.20 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC---------------------------------------eEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI---------------------------------------ECT 228 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 228 (365)
..++..-. ..+...++|==||+|.++++.+-..+++ .++
T Consensus 181 aAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 181 AAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 34444444 4556899999999999999988876532 267
Q ss_pred Eeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 229 VFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 229 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
++|+ +.+++.|+. .+.|+|..+|+.. +-+ ++|+|+++-
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 9999 889988874 6789999999987 333 699999864
No 301
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=93.61 E-value=0.036 Score=38.78 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=35.0
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 45 PDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 45 f~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|... +..|..+||.++++ ++..++.+|+.|...|.+.+..
T Consensus 6 ~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 6 RDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 3455553 78999999999999 6799999999999999999875
No 302
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=93.59 E-value=0.034 Score=37.85 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=34.4
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 45 PDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 45 f~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|....+|.|..|||+++|+ +...++++|..|...|.+....
T Consensus 6 l~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 6 LEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp HHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 3344432379999999999999 5788999999999999999753
No 303
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.59 E-value=1.2 Score=41.59 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=75.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH--------C--------CCCeEEEeechH-----HHHhcc-------cCCCe--EE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK--------F--------PHIECTVFDQPH-----VVADLK-------SNGNL--KY 247 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~-----~~~~a~-------~~~~i--~~ 247 (365)
....-+|+|+||.+|..+..+... + |.+++..-|+|. ...... ...++ .-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 455679999999999998775442 1 335677778743 111111 12333 34
Q ss_pred EeCCCCCC-CC--CceEEEeccccccCCh-------------------------hHH------------HHHHHHHHHhc
Q 017835 248 VGGNMFEA-IP--PADAVLIKCVLHNWND-------------------------EEC------------VKILKNCKKAI 287 (365)
Q Consensus 248 ~~~d~~~~-~~--~~D~i~~~~vlh~~~~-------------------------~~~------------~~~L~~i~~~L 287 (365)
+++.|... +| ..|++++++.||-++. +.+ ..+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67899884 45 4999999999985431 111 12233223467
Q ss_pred ccCCCCcEEEEEeeecCCCccCc-----cch-hhhhhhhhhhhhccC--------cc--ccCHHHHHHHHHhcC-Cccc
Q 017835 288 AINGKAGKVIIIDIKMESEKADY-----KTT-ETQLFMDMLMMVLVK--------GE--ERNEKEWAKLFFEAG-FSDY 349 (365)
Q Consensus 288 ~p~~~gG~lli~e~~~~~~~~~~-----~~~-~~~~~~d~~~~~~~~--------~~--~~t~~e~~~ll~~aG-f~~~ 349 (365)
+| ||++++.-...++..... .+. ....+.++....... -+ .++.+|+++.+++.| |++.
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 88 999998877776622211 000 111233332221111 11 249999999999876 4443
No 304
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=93.57 E-value=0.19 Score=40.57 Aligned_cols=62 Identities=10% Similarity=0.247 Sum_probs=48.0
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
++|++.+.++.+ .. +.+.+..+||+..|+ +...+++.|+.|...|+++.... ..|.|.+...
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~G----~~GG~~l~~~ 70 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVRG----KNGGIRLGKP 70 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEecC----CCCCeeecCC
Confidence 567777766654 32 257899999999999 57999999999999999998752 1467887753
No 305
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.41 E-value=0.73 Score=43.76 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=63.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHH----HHHHHHC---CCCeEEEeechH-----HHHhccc-------CCC--eE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLA----SAIAKKF---PHIECTVFDQPH-----VVADLKS-------NGN--LK 246 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~----~~l~~~~---p~~~~~~~D~~~-----~~~~a~~-------~~~--i~ 246 (365)
..|++.+. -...-+|+|+|.|.|.-= ..|+.+. |.+++|+++.|. .++.+.+ .-+ .+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 44666666 567789999999999543 3344432 778999998732 2222221 222 33
Q ss_pred EEeC--CCCCCC--------C-CceEEEeccccccCChh------HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 247 YVGG--NMFEAI--------P-PADAVLIKCVLHNWNDE------ECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 247 ~~~~--d~~~~~--------~-~~D~i~~~~vlh~~~~~------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
|... +-.+.. + ++=+|-+...||++.++ ....+|+.++ .|+| -.++++|.-.+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCCC
Confidence 3331 111111 1 23334455667888632 2455777665 6788 677888876554
No 306
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.05 E-value=0.91 Score=44.16 Aligned_cols=127 Identities=17% Similarity=0.338 Sum_probs=80.8
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcccc-ccCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-h
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDV-FEGLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-P 233 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 233 (365)
..|+.+.+++-.-..|+++.. ..+.+..++. .+....|+-+|+|-|-+..+..+. ...++.++++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 456777777766555655432 3444444422 123578889999999887776553 34567788876 6
Q ss_pred HHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccccccCChhH-HHHHHHHHHHhcccCCCCcEEE
Q 017835 234 HVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEE-CVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 234 ~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~-~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.++.-.+. ..+|+++..||.+ ..| .+|++++- .|.-+.|.+ ..+-|.-+-+.||| +|.-+
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkp---dgIsI 475 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKP---DGISI 475 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCC---CceEc
Confidence 65554442 7899999999998 333 48887653 333343322 23447778888999 65444
No 307
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.03 E-value=0.11 Score=49.05 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=37.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCC
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNM 252 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~ 252 (365)
+|||+=||.|.++..|++.+ .+++++|. +.+++.|+. .++++|+.++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 89999999999999999874 48999998 888888874 56889987654
No 308
>PRK11050 manganese transport regulator MntR; Provisional
Probab=93.03 E-value=0.43 Score=39.09 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=46.2
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
|...+.. +++.+..+||+.+++ +...+.++|+.|...|++.... ...+++|+.+..+.
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~------~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP------YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec------CCceEECchHHHHH
Confidence 3344443 368999999999999 5789999999999999998764 46788888876543
No 309
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.00 E-value=3 Score=36.67 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=50.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC-----CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP-----PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-----~~D~i~~~~v 267 (365)
-.+++||=||=.- ..+++++-.++..+++++|+ ...++..++ .-.|+.+..|+.+++| .||+++.--.
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 3468999998443 44555555566779999998 666666553 4459999999999876 3999988432
Q ss_pred cccCChhHHHHHHHHHHHhccc
Q 017835 268 LHNWNDEECVKILKNCKKAIAI 289 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p 289 (365)
++.+-..-++.+...+||.
T Consensus 122 ---yT~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 122 ---YTPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-S
T ss_pred ---CCHHHHHHHHHHHHHHhCC
Confidence 3445667788899999997
No 310
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=92.96 E-value=0.11 Score=36.15 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=42.7
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.++..|.+ ++.|..+||+++++ ....+++.++.|.+.|+..... +..|.+....
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~------~~g~~l~~~~ 57 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV------GKGYRLPPPI 57 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec------CCceEecCcc
Confidence 455667775 68999999999999 5789999999999999966543 3566665443
No 311
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=92.94 E-value=0.14 Score=40.78 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
++.|+.+||+++++ ++..+.++|+.|...|++..... ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g----~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRG----VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCC----CCCChhhcC
Confidence 68999999999999 57999999999999999986531 146677754
No 312
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=92.88 E-value=0.28 Score=32.23 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHH
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRI 80 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~ 80 (365)
.-.+|.+|++.|-||.= ...|.+|||+.+|++ ...+...||-
T Consensus 5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~~lgis---~st~~~~LRr 46 (53)
T PF04967_consen 5 QREILKAAYELGYFDVP----RRITLEELAEELGIS---KSTVSEHLRR 46 (53)
T ss_pred HHHHHHHHHHcCCCCCC----CcCCHHHHHHHhCCC---HHHHHHHHHH
Confidence 45789999999999873 479999999999994 5656665553
No 313
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=92.76 E-value=0.42 Score=32.45 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|..+||+.+++ +...+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 359999999999 5788999999999999998764
No 314
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.75 E-value=0.034 Score=44.88 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=37.5
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.|+|++.+|+.|+.-++-...++.+++.||| ||+|-|.-+
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 49999999999999999999999999999999 999988643
No 315
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=92.74 E-value=0.19 Score=41.15 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.++.+..+||+.+++ .+..+..+++-|...|++++.. .+.+++|+.|+...
T Consensus 22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~------y~gi~LT~~G~~~a 72 (154)
T COG1321 22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP------YGGVTLTEKGREKA 72 (154)
T ss_pred cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec------CCCeEEChhhHHHH
Confidence 379999999999999 4688999999999999999987 79999999887443
No 316
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=92.70 E-value=0.12 Score=41.79 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=48.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.|+..|.. .++.|..+||+.+++ +...+.++++-|...|++.+....+|+..-...+|+.|..+.
T Consensus 44 ~vL~~l~~-~~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 44 KVLCSIRC-AACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 34555654 278999999999999 679999999999999999987532222123478888887544
No 317
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=92.69 E-value=0.13 Score=45.70 Aligned_cols=65 Identities=14% Similarity=0.323 Sum_probs=55.2
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 35 SLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 35 ~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++....+.+|+=.|.+ +|+|.+||-..+++ ++..+..-|+-|...|++.++ ++.|++|..|+.++
T Consensus 9 if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~-------~~~Y~LS~~G~iiv 73 (260)
T COG4742 9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQE-------GDRYSLSSLGKIIV 73 (260)
T ss_pred HHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEec-------CCEEEecchHHHHH
Confidence 3445567778888886 89999999999999 467888889999999999998 59999999998665
No 318
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=92.57 E-value=0.15 Score=41.33 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=47.3
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|...+++.|..+||+.+++ +...+.++++-|...|++++....+|...-.+.+|+.|+.+.
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence 34444432246899999999999 678999999999999999997532222123478888887544
No 319
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=0.47 Score=38.09 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=65.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~vl 268 (365)
.++..+.+|+|.|.|....+.++.. -...+++++ |-.+...+- ..+..|...|+++ ++.+|..++++.+=
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgae 148 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAE 148 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehH
Confidence 3566899999999999987777664 346788888 555444331 6788888899998 67777666665433
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
..++| +-.+++.-|+. +.+++-.-+-+|.
T Consensus 149 s~m~d-----Le~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 149 SVMPD-----LEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred HHHhh-----hHHHHHhhCcC---CCeEEEEecCCCc
Confidence 32332 22355555666 6777766554443
No 320
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=92.32 E-value=0.15 Score=34.06 Aligned_cols=44 Identities=9% Similarity=0.247 Sum_probs=37.7
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|++.|... +..|+++||+.+++ .+.-++|=|..|...|++.+..
T Consensus 5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 44556553 79999999999999 5789999999999999999985
No 321
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=91.99 E-value=0.19 Score=38.62 Aligned_cols=56 Identities=13% Similarity=0.369 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..+||+.+++ +...+.++++.|...|++.+....+|...-.+.+|+.+..+.
T Consensus 42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 68999999999999 679999999999999999987532222112377887776433
No 322
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=91.89 E-value=0.076 Score=35.98 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|+.+||+.+++ +...+.+.++.|...|++++..
T Consensus 22 ~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 22 LTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp EEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 899999999999 6799999999999999999875
No 323
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=91.74 E-value=0.67 Score=42.27 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=40.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeC----CCCCCC--C--CceEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGG----NMFEAI--P--PADAV 262 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~----d~~~~~--~--~~D~i 262 (365)
...++||||+|....=.-|..+..+.++++.|+ +..++.|++ .++|+++.. +++... + .||+.
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 357999999999855333333333889999999 778887774 568888644 344422 1 39999
Q ss_pred EeccccccC
Q 017835 263 LIKCVLHNW 271 (365)
Q Consensus 263 ~~~~vlh~~ 271 (365)
+|.--+|.=
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 998887753
No 324
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=91.72 E-value=0.17 Score=43.65 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=46.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc-CCCCcc-ceEecCccchhhh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT-SENEQE-EGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~-~~y~~t~~~~~l~ 111 (365)
.|+..|... ++.|+.+||+.+++ ++..+++.|+.|...|++++... ...|.. -.|++|+.+..+.
T Consensus 5 ~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 5 DILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 355556543 68999999999999 57999999999999999987621 000101 2378888876444
No 325
>PRK06474 hypothetical protein; Provisional
Probab=91.72 E-value=0.21 Score=42.16 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCC--CCccceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSE--NEQEEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~~~y~~t~~~~ 108 (365)
..+|.--.++.|++.|...+.+.|+.+|++.+ ++ +...+.|.|+.|...|+++...... ++.+..|++++.+-
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45566667788888887643459999999999 56 4577999999999999999754210 11234588887654
No 326
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.66 E-value=0.65 Score=47.79 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=60.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-------C-----CCeEEEeec-h---HHHHhcc-----------c----------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF-------P-----HIECTVFDQ-P---HVVADLK-----------S---------- 241 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~-----------~---------- 241 (365)
+..-+|+|+|=|+|.......+.+ | .++++.++. | ..+..+. +
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344799999999999777666544 3 467888885 2 1111110 0
Q ss_pred --------CC--CeEEEeCCCCCC---CC-CceEEEecc-ccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 242 --------NG--NLKYVGGNMFEA---IP-PADAVLIKC-VLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 242 --------~~--~i~~~~~d~~~~---~~-~~D~i~~~~-vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.. ++++..||+.+. +. .+|++++-. .-..-++--..++|+++++.++| ||++.-.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEEEe
Confidence 12 334567887662 22 489988742 22222333336789999999999 7777643
No 327
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=91.64 E-value=0.52 Score=35.06 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=51.7
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh--ccCcccc-------CHH
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV--LVKGEER-------NEK 335 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~-------t~~ 335 (365)
..+|-|++.++..++|+++...-+ +.+++. .. |.. .++.+.... .+.+..| .++
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~-----~~~ifT-fA-P~T----------~~L~~m~~iG~lFP~~dRsp~i~~~~e~ 64 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR-----GSLIFT-FA-PRT----------PLLALMHAIGKLFPRPDRSPRIYPHREE 64 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc-----CcEEEE-EC-CCC----------HHHHHHHHHhccCCCCCCCCcEEEeCHH
Confidence 356667899999999999988765 455442 11 111 111111111 1333333 789
Q ss_pred HHHHHHHhcCCccceEEEcC-Cc--eeEEEEeC
Q 017835 336 EWAKLFFEAGFSDYKITDVL-GV--RSLIEVYP 365 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~~~-~~--~~vi~~~~ 365 (365)
++.+.++++||++.+...+. ++ ...+|++|
T Consensus 65 ~l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 65 DLRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 99999999999999888874 33 33555543
No 328
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=91.62 E-value=0.16 Score=37.53 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++....||.+.+ ++ .+..+.+-|+.|.+.|++++.........-.|++|+.++.|.
T Consensus 17 g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 17 GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 799999999999 88 578999999999999999986421100013599999998554
No 329
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=91.61 E-value=0.19 Score=33.20 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=32.5
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL 89 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 89 (365)
++..|....++.|+++||+.+++ ..+.+++-+..|...|+.-.
T Consensus 5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~~~I~ 47 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWGIPIE 47 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEE
Confidence 34445333467999999999999 67999999999999994333
No 330
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=91.49 E-value=0.32 Score=32.69 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
++.|..+|++.+++ +...+.+.|+.|...|++..... +....|.++.
T Consensus 9 ~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~~---~~~~~~~~~~ 55 (66)
T smart00418 9 GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRRE---GKRVYYSLTD 55 (66)
T ss_pred CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeeec---CCEEEEEEch
Confidence 68999999999999 56889999999999999997641 1123466554
No 331
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=91.48 E-value=0.46 Score=31.54 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=31.9
Q ss_pred CCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..+ |..+||+.+++ +...+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 5789999999999999998764
No 332
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=91.44 E-value=0.066 Score=35.93 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|..+||+.+++ +...+.++++.|...|++++..
T Consensus 16 ~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 16 GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 68999999999999 6799999999999999999875
No 333
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=91.40 E-value=0.2 Score=43.22 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=45.1
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.++..|... ++.+..+||+.+++ ++..+.+.|+.|...|++.+.+. ....|.+|+.+
T Consensus 146 ~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~----r~~~~~lT~~G 203 (203)
T TIGR01884 146 LKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR----KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC----CccEEEeCCCC
Confidence 3455555542 67999999999999 56889999999999999998851 14668888754
No 334
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.36 E-value=1.1 Score=40.75 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=75.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhcccCCCeEEEeCCCCC----C-CCCceEEEeccccccCCh--
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIE-CTVFDQ-PHVVADLKSNGNLKYVGGNMFE----A-IPPADAVLIKCVLHNWND-- 273 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~i~~~~~d~~~----~-~~~~D~i~~~~vlh~~~~-- 273 (365)
+++|+=||.|.+...+.+.. .+ +..+|. +..++..+..-.-.+..+|+.+ . .+.+|+++....+..++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999988773 44 566887 6666655542111256677776 1 346999998766654431
Q ss_pred ------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 274 ------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 274 ------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
+....++.++.++++-. .-+++++|.+..-... .......+|.+.|++.||.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~--------------------~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLTH--------------------DNGNTLKVILNTLEELGYN 137 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhcc--------------------CchHHHHHHHHHHHhCCcE
Confidence 12233444444444321 2367888876422110 0112467788888999998
Q ss_pred cceE
Q 017835 348 DYKI 351 (365)
Q Consensus 348 ~~~~ 351 (365)
+...
T Consensus 138 ~~~~ 141 (275)
T cd00315 138 VYWK 141 (275)
T ss_pred EEEE
Confidence 6433
No 335
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=91.26 E-value=0.33 Score=36.08 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 57 LNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 57 ~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.+||+.+++ +...+.+.|+.|...|++.... +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC------CCceEechhHHHHH
Confidence 5689999999 5789999999999999999985 46899998887543
No 336
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.25 E-value=3.2 Score=38.61 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=65.2
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCC---CCCCCCC-ceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGG-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGN---MFEAIPP-ADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~~~~-~D~i~~~~vlh~~ 271 (365)
..++.+|+=+|.| .|.++..+++..- .+++++|. ++-.+.+++...-.++... ..++... +|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 6778888888876 4577888888764 99999999 7778888874444444433 2222232 899887654 2
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
..+...-+.|++ ||+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 336677788898 99999987653
No 337
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=91.24 E-value=0.22 Score=42.86 Aligned_cols=56 Identities=14% Similarity=0.351 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 31 VNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 31 ~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
=..++|...++..+++.|+.. +|+.+.|||+++|+| ..-+..-+..|...|++.-+
T Consensus 15 dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgLp---qst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 15 DVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGLP---QSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCc---hhhhhhhHHHHHhcCceeee
Confidence 355788888999999999974 899999999999994 67788889999999999864
No 338
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=91.22 E-value=3.6 Score=38.80 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhcc----c--CCCeEEEeCCCCC---CCC---CceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH--IECTVFDQ-PHVVADLK----S--NGNLKYVGGNMFE---AIP---PADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~--~~~i~~~~~d~~~---~~~---~~D~i 262 (365)
..++.+|||.-++.|.=+..++...++ ..++.+|. +.-+.... + ..++.++..|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 577899999999999999999998765 56689998 44444433 2 4556777777653 122 28998
Q ss_pred Eec------ccc-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 263 LIK------CVL-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 263 ~~~------~vl-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
++- .++ ..+...+ -.++|+.+.+.||| ||.|+........
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~ 293 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTP 293 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCch
Confidence 772 333 2233221 25789999999999 8888776655533
No 339
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=91.07 E-value=0.2 Score=43.29 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=46.2
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCC-Ccc-ceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSEN-EQE-EGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~-~~~-~~y~~t~~~~~l~ 111 (365)
|...|..+ +|+|+.|||+++|+ ++..+++.|+.|++.|+++.....-+ |.+ -.|++|..+....
T Consensus 16 il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f 81 (218)
T COG2345 16 ILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQF 81 (218)
T ss_pred HHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhc
Confidence 34445543 89999999999999 56999999999999999987531100 001 2499998776433
No 340
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=90.77 E-value=0.27 Score=31.74 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|+.+|++.+++ +...+.+.|+.|...|++.+..
T Consensus 13 ~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 13 GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 67999999999999 5788999999999999999864
No 341
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=90.19 E-value=0.41 Score=27.78 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.6
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCce
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFF 87 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l 87 (365)
|+|-+|||+.+|+ ...-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 578899999999999875
No 342
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=90.17 E-value=0.47 Score=32.66 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|-|-|+.|||+.+|+. .+..+.+.|+.|...|++.+..
T Consensus 23 G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 3467999999999995 4789999999999999999874
No 343
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.08 E-value=0.6 Score=39.29 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=47.8
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++-.|... +++.|..+||+.+++ +...+.++++-|...|++++....+|...-.+.+|+.|+.+.
T Consensus 60 iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 60 ALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 44444321 267999999999999 578999999999999999997633322123478888887544
No 344
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=89.86 E-value=0.51 Score=39.73 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=39.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|+++|... +++|.++||+.+|+ ....+++.|..|...|++....
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence 3477777764 79999999999999 5789999999999999999543
No 345
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=89.64 E-value=0.29 Score=37.90 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=38.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCC--CCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQI--HPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~--~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|++.|...+.+.|+++|.+.+.- +..+..-++|.|+.|+..|++.+..
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 4466667654578999999999832 1115678999999999999999865
No 346
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=89.63 E-value=2 Score=39.11 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=71.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC----CC-CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA----IP-PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~~-~~D~i~~ 264 (365)
..++.+|||.-++.|.=+..++.... ...++..|. +.-+...+. ..++.+...|..+. .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 46788999999999999999999876 568899998 555554442 56777777776652 23 3899987
Q ss_pred c------cccccCCh-------h-------HHHHHHHHHHHhc----ccCCCCcEEEEEeeec
Q 017835 265 K------CVLHNWND-------E-------ECVKILKNCKKAI----AINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~------~vlh~~~~-------~-------~~~~~L~~i~~~L----~p~~~gG~lli~e~~~ 303 (365)
- .++..-++ . .-.++|+++.+.+ +| ||+++-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccH
Confidence 2 22221111 1 1247899999999 99 78777665444
No 347
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=89.60 E-value=0.4 Score=33.33 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=40.6
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
|+..+.. ++.+..+|++.+++ +...+.+.|+.|.+.|++...... ....|++++
T Consensus 12 il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~~---~~~~~~~~~ 65 (78)
T cd00090 12 ILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD 65 (78)
T ss_pred HHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEec---cEEEEEeCC
Confidence 4444444 34999999999999 568899999999999999986421 135577775
No 348
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=89.51 E-value=1.1 Score=40.49 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=65.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---C--CCCce
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---A--IPPAD 260 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~--~~~~D 260 (365)
..+.++++=||+|-|.++....+. +.+ .+..+|. ..+++.-++ ..+|.+.-||-+. . ..+||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 356789999999999999888876 444 4566676 444544432 6799999998776 2 33699
Q ss_pred EEEeccccccCChhHH----HHHHHHHHHhcccCCCCcEEEEEe
Q 017835 261 AVLIKCVLHNWNDEEC----VKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~----~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+|+.-..= .--+.+ ..++.-+.++||| ||.+....
T Consensus 198 Vii~dssd--pvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSD--PVGPACALFQKPYFGLVLDALKG---DGVVCTQG 236 (337)
T ss_pred EEEEecCC--ccchHHHHHHHHHHHHHHHhhCC---CcEEEEec
Confidence 99873211 011112 3455667789998 78887764
No 349
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=89.45 E-value=0.15 Score=37.72 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++...--|.-.+++ +....+.+++.|+..|++..... +....|.+|+.+.-|.
T Consensus 29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~---~~~~~y~lT~KG~~fl 82 (95)
T COG3432 29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN---GRRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC---CccceEEEChhHHHHH
Confidence 377888889999999 68999999999999996666541 1123699999998554
No 350
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=89.26 E-value=0.37 Score=37.62 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=42.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
-.+.|++.|+.. +|.|+.|+|+..|- +..++.|-|+.|...|++..+.
T Consensus 65 ~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 65 RNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred hHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 356778888864 89999999999998 7899999999999999999885
No 351
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=89.23 E-value=1.4 Score=36.84 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc--CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 29 SFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL--QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 29 g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.-|...+++..+.+.= +..+.++||+++ ++ ...-++.-|+.|..+|++++.+ +|.|..|..
T Consensus 22 ~~W~~~~ir~l~~l~~--------~~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~------~g~y~~t~~ 84 (171)
T PF14394_consen 22 SSWYHPAIRELLPLMP--------FAPDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG------DGKYVQTDK 84 (171)
T ss_pred hhhHHHHHHHHhhcCC--------CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC------CCcEEEecc
Confidence 3455556666554432 233999999999 88 5788999999999999999997 689998876
Q ss_pred chh
Q 017835 107 SKL 109 (365)
Q Consensus 107 ~~~ 109 (365)
+-.
T Consensus 85 ~l~ 87 (171)
T PF14394_consen 85 SLT 87 (171)
T ss_pred eee
Confidence 543
No 352
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=89.00 E-value=0.35 Score=46.80 Aligned_cols=55 Identities=27% Similarity=0.365 Sum_probs=45.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
++....++|+=||||.++.++++. -.+++|+++ |..++.|+. ..+++|++|-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 567799999999999999988876 468999998 888888774 5788999994444
No 353
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=88.72 E-value=0.68 Score=31.29 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+++.+..+||+.+++ .+..+..+++-|...|+++.+.
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 479999999999999 5788999999999999999874
No 354
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.63 E-value=5.3 Score=38.01 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=63.4
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCC----CCC---CC-C--CceEEEec
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGN----MFE---AI-P--PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d----~~~---~~-~--~~D~i~~~ 265 (365)
..++.+||.+|||. |..+..+++...-.++++++. ++..+.+++...+.++... +.+ .. + .+|+++-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999998 889999999875446888887 7777766642122332211 111 11 1 47887664
Q ss_pred c---------------ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 C---------------VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~---------------vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
- +|+...+. ...++++.+.++| +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 2 11111222 4578889999999 899988854
No 355
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=88.41 E-value=0.43 Score=35.26 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|+..|... +|=.+.-||..+++ +...+...++-|..+|++++..
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 34455555553 78899999999999 5789999999999999999985
No 356
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=88.19 E-value=1.1 Score=39.42 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHhhccccccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHH-hcc-------c--------CCCeEEEeC
Q 017835 189 ALIHKCKDVFEGL--NTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVA-DLK-------S--------NGNLKYVGG 250 (365)
Q Consensus 189 ~~~~~~~~~~~~~--~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~-~a~-------~--------~~~i~~~~~ 250 (365)
.+++.+. ++++ .+|||.=+|-|.-+.-++.. ++++++++..+++. ..+ . ..||+++.+
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4555565 4544 49999999999999988865 78999999844333 222 1 258999999
Q ss_pred CCCC--CC--CCceEEEecccc
Q 017835 251 NMFE--AI--PPADAVLIKCVL 268 (365)
Q Consensus 251 d~~~--~~--~~~D~i~~~~vl 268 (365)
|..+ .. ..+|+|++--.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S-
T ss_pred CHHHHHhhcCCCCCEEEECCCC
Confidence 9888 32 259999985544
No 357
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=88.12 E-value=0.91 Score=39.43 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=45.7
Q ss_pred ccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 47 IIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 47 ~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.+.. ...+|..+||+.+++ +...+.+.|+.|...|++++.... ....+++|+.++.+.
T Consensus 15 ~l~~-~~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~~---r~~~v~LTekG~~ll 72 (217)
T PRK14165 15 AVNN-TVKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIVP---RGQLITITEKGLDVL 72 (217)
T ss_pred ccCC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEcC---CceEEEECHHHHHHH
Confidence 4443 257999999999999 679999999999999999987521 135689998887444
No 358
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=88.12 E-value=0.52 Score=36.64 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=43.8
Q ss_pred HHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 37 KCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 37 ~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..++..|.+.+..+ |.+|..+++..+|+ +-..+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 345667777888775 89999999999999 5788999999999999999986
No 359
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=88.03 E-value=0.38 Score=36.66 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 355677777763 78999999999999 579999999999999999953
No 360
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.01 E-value=1.9 Score=37.52 Aligned_cols=94 Identities=19% Similarity=0.336 Sum_probs=65.8
Q ss_pred cccCCCeEEEecCCccHHHHHHHHHC----C-C-C---eEEEeechHHHHhcccCCCeEEEeCCCCCC---------CC-
Q 017835 197 VFEGLNTLVDVGGGTGTLASAIAKKF----P-H-I---ECTVFDQPHVVADLKSNGNLKYVGGNMFEA---------IP- 257 (365)
Q Consensus 197 ~~~~~~~iLDiG~G~G~~~~~l~~~~----p-~-~---~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~- 257 (365)
.+.+..+++|+=...|.++..|.++. + . - +++.+|+..|.. -+.|.-+.+|+.++ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 35778899999999999999988864 1 1 1 278889866655 46777788999873 22
Q ss_pred -CceEEEecc-----ccccCChh----HHHHHHHHHHHhcccCCCCcEEE
Q 017835 258 -PADAVLIKC-----VLHNWNDE----ECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 258 -~~D~i~~~~-----vlh~~~~~----~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.+|+|+|-. -+|+++.= -....|.-...+|+| ||.++
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 489999953 36766542 223344455568999 88765
No 361
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=87.97 E-value=0.48 Score=39.07 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=38.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|+++|... +.+|-++||+.+|+ +...++++|..|...|++...+
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 4466777643 78999999999999 5788999999999999997543
No 362
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=87.78 E-value=0.91 Score=36.28 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|++|++|||-+.|+ ..+.+.--|.++++.|-|.+..
T Consensus 4 ~Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~ 40 (155)
T PF07789_consen 4 EGAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVN 40 (155)
T ss_pred cCcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEec
Confidence 389999999999999 5789999999999999999986
No 363
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.78 E-value=8.2 Score=29.70 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=54.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCC----CCceEEEeccccccCChh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAI----PPADAVLIKCVLHNWNDE 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~----~~~D~i~~~~vlh~~~~~ 274 (365)
....+|++||-|.=......+++. ++.++..|+.+- .+ ...+.++.-|+++|- .++|+|++-. +.+
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 344699999888775544444443 478899998333 33 378899999999963 3689988744 556
Q ss_pred HHHHHHHHHHHhcc
Q 017835 275 ECVKILKNCKKAIA 288 (365)
Q Consensus 275 ~~~~~L~~i~~~L~ 288 (365)
+....+-+++++++
T Consensus 82 El~~~ildva~aVg 95 (129)
T COG1255 82 ELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHhhC
Confidence 66666666777664
No 364
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=87.75 E-value=1.1 Score=33.49 Aligned_cols=44 Identities=9% Similarity=-0.025 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.++|..|||+.+|+ +...+.|.|+.|...|++...+. .+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-----~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-----MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-----CceeecC
Confidence 69999999999999 56899999999999999998742 4667665
No 365
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.30 E-value=1.3 Score=42.14 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCCeEEEeCCCCC---CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 242 NGNLKYVGGNMFE---AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 242 ~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.++|+++.+++.+ ..| ++|.+++.....-+++++..+.++++.+.++| ||+++.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 6899999999887 233 59999999999888999999999999999999 9999997765543
No 366
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=87.10 E-value=2.8 Score=32.90 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=46.9
Q ss_pred cCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCCC----CceEEEeccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIP----PADAVLIKCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~----~~D~i~~~~vlh~~~~ 273 (365)
.+..+|++||-|.=.- +..|.+. ++.++..|..+. .+ ...+.++.-|+++|-. ++|+|++.. ++
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP 80 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----PP 80 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----CC
Confidence 3456999999888755 4445555 489999998332 22 3788899999999643 689998865 44
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
++.+.-+.++++.. |.-++|.-.
T Consensus 81 ~El~~~il~lA~~v-----~adlii~pL 103 (127)
T PF03686_consen 81 PELQPPILELAKKV-----GADLIIRPL 103 (127)
T ss_dssp TTSHHHHHHHHHHH-----T-EEEEE-B
T ss_pred hHHhHHHHHHHHHh-----CCCEEEECC
Confidence 45555666666665 355555443
No 367
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=86.58 E-value=1.2 Score=31.42 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
-+.|-++||+.+|+ ....+.+.|+.|...|++...+ +.+....
T Consensus 27 ~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~-------~~i~I~d 69 (76)
T PF13545_consen 27 LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR-------GKIIILD 69 (76)
T ss_dssp EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET-------TEEEESS
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC-------CEEEECC
Confidence 48999999999999 5788999999999999999874 6666554
No 368
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=86.13 E-value=0.89 Score=32.29 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=36.4
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 46 DIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 46 ~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|.|... +-.++.+||.++++ +++.++.+|..|+.+|-+++..
T Consensus 9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 445543 78999999999999 5799999999999999999874
No 369
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=86.07 E-value=1.3 Score=31.51 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec-cccCCCCccceEecCccch
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL-QKTSENEQEEGYILTSASK 108 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~-~~~~~~~~~~~y~~t~~~~ 108 (365)
+.|+...+||+.+++ ++.-++--+..|.++|+++. ... .+.|.+|..+-
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~-----s~GriPT~~aY 70 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP-----SGGRIPTDKAY 70 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC-----CCCCCcCHHHH
Confidence 479999999999999 56889999999999999985 332 47788876553
No 370
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.87 E-value=4.4 Score=36.34 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=94.1
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhcCCCCChHHHHHHccCc--cccc
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP--ILTK 132 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 132 (365)
.+.-.|++...+ +-+.+..+++.|...|++..+ ++...+|..++.++..- .+...-.+-+.- .---
T Consensus 35 ~d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~-------~g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeGrgi 102 (354)
T COG1568 35 NDFWKIVDYSDL---PLPLVASILEILEDEGIVKIE-------EGGVELTEKGEELAEEL--GIKKKYDYTCECCEGRGI 102 (354)
T ss_pred cchHhhhhhccC---CchHHHHHHHHHHhcCcEEEe-------cCcEeehhhhHHHHHHh--CCCccccccccCcCCccc
Confidence 377888888888 468899999999999999998 46699999998666422 111111111100 0000
Q ss_pred chhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCcc
Q 017835 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTG 212 (365)
Q Consensus 133 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G 212 (365)
.+....+.+++ |-++....|.....|.+....--..... +.-.+..+.-.++.|+=+| ---
T Consensus 103 ~l~~f~dll~k-----------------f~eiaK~RP~p~~~yDQgfvTpEttv~R-v~lm~~RGDL~gK~I~vvG-DDD 163 (354)
T COG1568 103 SLQAFKDLLEK-----------------FREIAKDRPEPLHQYDQGFVTPETTVSR-VALMYSRGDLEGKEIFVVG-DDD 163 (354)
T ss_pred cchhHHHHHHH-----------------HHHHHhcCCCcchhcccccccccceeee-eeeeccccCcCCCeEEEEc-Cch
Confidence 00112222221 1111112222222222221111000000 0001111223467899898 444
Q ss_pred HHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-----CceEEEe
Q 017835 213 TLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-----PADAVLI 264 (365)
Q Consensus 213 ~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-----~~D~i~~ 264 (365)
.++++++-..---++.++|+ ...+....+ .++++.+..|+.+|+| .||+++-
T Consensus 164 Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 164 LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec
Confidence 44554444332237778887 444544332 5679999999999988 3898865
No 371
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=85.83 E-value=0.43 Score=41.43 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+-....|||+.+|+ .++.+...++-|+..|++++.+ .++|..|+.+..+
T Consensus 24 p~v~q~eIA~~lgi---T~QaVsehiK~Lv~eG~i~~~g------R~~Y~iTkkG~e~ 72 (260)
T COG1497 24 PRVKQKEIAKKLGI---TLQAVSEHIKELVKEGLIEKEG------RGEYEITKKGAEW 72 (260)
T ss_pred CCCCHHHHHHHcCC---CHHHHHHHHHHHHhccceeecC------CeeEEEehhHHHH
Confidence 56899999999999 5799999999999999999976 5799999988633
No 372
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=85.44 E-value=0.76 Score=39.38 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+.|++|+|+++|+ ...-.+|.|.+|++.|+++.+
T Consensus 172 ~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 172 QELTAEELAQALGI---SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred CccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEE
Confidence 79999999999999 567899999999999999865
No 373
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=2.3 Score=39.60 Aligned_cols=64 Identities=28% Similarity=0.451 Sum_probs=41.7
Q ss_pred CchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC----C----CCeEEEeec-hHHHH
Q 017835 168 ETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF----P----HIECTVFDQ-PHVVA 237 (365)
Q Consensus 168 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 237 (365)
.|+..+.|.+..+.... .+...+. .+....++++|.|.|.++.-+++.. | .+++..++. ++..+
T Consensus 51 Apels~lFGella~~~~----~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 51 APELSQLFGELLAEQFL----QLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred chhHHHHHHHHHHHHHH----HHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 46667777766553321 1222233 3456789999999999988887753 4 568888887 44333
No 374
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.00 E-value=2.2 Score=38.10 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=26.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCC--------CCeEEEeec-hHHHH
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFP--------HIECTVFDQ-PHVVA 237 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~-~~~~~ 237 (365)
.-+|+|+|+|+|.++..+++... .++++.++. |...+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~ 64 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE 64 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH
Confidence 47999999999999999888643 358999998 44443
No 375
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=84.94 E-value=1.3 Score=42.69 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
+.|.|.++|++++++ +++.++++|+.|...|++.+.+ ++.|.+..
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~------~g~~~l~r 352 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE------RGQWVLAR 352 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC------CCceEecC
Confidence 369999999999999 5799999999999999999754 46677664
No 376
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=84.61 E-value=1.4 Score=41.95 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=55.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C-CCC--ceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A-IPP--ADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~~~--~D~i~~~~ 266 (365)
.+...+||||.|||.++...+++..+ .++.++. .+|.+.+++ +++|+++.---.+ . .|. +|+++-..
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 34578999999999999888887644 6899887 777777764 6777776543222 1 222 66665544
Q ss_pred ccccCChhHHHHHHHHHHHhc
Q 017835 267 VLHNWNDEECVKILKNCKKAI 287 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L 287 (365)
+.-.+--+-+..-++++++.|
T Consensus 144 fdtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhhccccchhHHHHHHHh
Confidence 333332233344566666554
No 377
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.52 E-value=16 Score=30.31 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=70.2
Q ss_pred EecCCccHHHHHHHHHCC-CC--eEEEeec-hHHHHhccc---------CCCeEEE-eCCCCC---CC--C--CceEEEe
Q 017835 206 DVGGGTGTLASAIAKKFP-HI--ECTVFDQ-PHVVADLKS---------NGNLKYV-GGNMFE---AI--P--PADAVLI 264 (365)
Q Consensus 206 DiG~G~G~~~~~l~~~~p-~~--~~~~~D~-~~~~~~a~~---------~~~i~~~-~~d~~~---~~--~--~~D~i~~ 264 (365)
=||=|.-.++..|++.+. .. -.|.+|- .+..+.-.. ...+++. ..|..+ .. . .||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 378888889999999977 43 4455665 333333221 3344433 335554 22 2 4999988
Q ss_pred cccccc-----------CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC
Q 017835 265 KCVLHN-----------WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 265 ~~vlh~-----------~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
++--.- ....-...+|+.+.+.|++ +|.|.|.=...+. ++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Cc
Confidence 654322 0122345778888899999 7888874322111 11
Q ss_pred HHHHHHHHHhcCCccceEEEc
Q 017835 334 EKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.=.+.++.+++||...+..+.
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred cccHHHHHHhcCCEEEEEecC
Confidence 112346667788888777665
No 378
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.25 E-value=2.2 Score=38.30 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhccc
Q 017835 214 LASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAI 289 (365)
Q Consensus 214 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p 289 (365)
++.+|.+..+..+++++|. +...+.+.+..-+.-...+ .+....+|+|+++- |.....++|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 3677888888999999998 7778777654444333332 22345689998864 445667888888888887
No 379
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=84.23 E-value=3.6 Score=33.22 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE 254 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~ 254 (365)
..-|+|+|=|+|..=-.|.+.+|+-++.++|..-.+.-....+.=.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 478999999999999999999999999999963222221113333467777766
No 380
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=84.17 E-value=0.65 Score=32.59 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=35.2
Q ss_pred ccccccCCCCCCHHHHHHHc---CCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 45 PDIIHNHAKPMTLNQLLTTL---QIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 45 f~~L~~~~~~~t~~~la~~~---~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|..... +..++.++|+.+ +... ..+.++.++.+|.+.|++++.+
T Consensus 17 ~~~~~~--~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 17 FESSPD--KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp HHHCCC--TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred HHHCCC--CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 334443 789999999999 8721 2588999999999999999965
No 381
>PHA02943 hypothetical protein; Provisional
Probab=83.92 E-value=1.3 Score=35.72 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+++.|. .|+.|..|||+++|+ +...++-.|..|...|.+.+..
T Consensus 15 eILE~Lk--~G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLA--DGCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHh--cCCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 4566664 378999999999999 5788999999999999999986
No 382
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=83.75 E-value=1.3 Score=37.47 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=47.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.++..|... ++.|..+||+.+.+ +...+.++++-|...|++.+.....|...-...+|+.|+.+.
T Consensus 49 ~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 49 HILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 455555543 68999999999999 457799999999999999987532222123478888887544
No 383
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=83.71 E-value=1.3 Score=32.67 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=46.9
Q ss_pred HHHHcCcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHH----------HHHhcCce-eccccCCCCccceEecCc
Q 017835 38 CAIQLGIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMR----------ILVHSGFF-ALQKTSENEQEEGYILTS 105 (365)
Q Consensus 38 ~a~~lglf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~----------~L~~~g~l-~~~~~~~~~~~~~y~~t~ 105 (365)
.-++..|+..|... ..+.++.|||..+++ ++.++..-|+ .|+.+|++ .+.. .++ ...|++|+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~--~~g-~k~Y~lT~ 81 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEE--KGG-FKYYRLTE 81 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeee--cCC-eeEEEeCh
Confidence 33556666666654 368999999999999 5677777775 48999999 3332 111 34799999
Q ss_pred cchhh
Q 017835 106 ASKLL 110 (365)
Q Consensus 106 ~~~~l 110 (365)
.+..+
T Consensus 82 ~G~~~ 86 (90)
T PF07381_consen 82 KGKRI 86 (90)
T ss_pred hhhhH
Confidence 87644
No 384
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=83.39 E-value=1.2 Score=34.26 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+..++..|... ++.+..+||+.+++ +...+.++++-|...|++.+....+|...-.+.+|+.++.+.
T Consensus 24 q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 24 QYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 44455555542 34444999999999 679999999999999999997643222123588898887444
No 385
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=82.92 E-value=2.3 Score=37.89 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=45.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
.++-.|-.. |+.|+.||++..|+ +...++.+|+.|...|+++.... .+..|+.-+-...
T Consensus 20 ~vY~aLl~~-g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~g----~P~~y~av~p~~~ 78 (247)
T COG1378 20 KVYLALLCL-GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIEG----RPKKYRAVPPEEL 78 (247)
T ss_pred HHHHHHHHh-CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeCC----CCceEEeCCHHHH
Confidence 334444432 79999999999999 47889999999999999999752 2677887765543
No 386
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.57 E-value=2.1 Score=38.31 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeech
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-----PHIECTVFDQP 233 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~~ 233 (365)
+.+...++|+|||.|.++..+.... +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4677899999999999999999988 56789999973
No 387
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=82.49 E-value=9.8 Score=29.92 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCC
Q 017835 277 VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLG 356 (365)
Q Consensus 277 ~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 356 (365)
.++|+++++.++| ||++.-.. ....+++.|.++||.+.+....++
T Consensus 70 ~e~~~~l~~~~~~---~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~ 114 (124)
T PF05430_consen 70 EELFKKLARLSKP---GGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGR 114 (124)
T ss_dssp HHHHHHHHHHEEE---EEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STT
T ss_pred HHHHHHHHHHhCC---CcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCC
Confidence 4689999999999 66554311 123468889999999877776666
Q ss_pred ceeEEEEe
Q 017835 357 VRSLIEVY 364 (365)
Q Consensus 357 ~~~vi~~~ 364 (365)
-.-++.+.
T Consensus 115 Kr~~~~a~ 122 (124)
T PF05430_consen 115 KREMLRAV 122 (124)
T ss_dssp SSEEEEEE
T ss_pred cchheEEE
Confidence 55555554
No 388
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.37 E-value=4.8 Score=37.29 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=72.5
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEE-Eeec-hHHHHhccc-CCCeEEEeCCCCC----CCCCceEEEeccccccCC----
Q 017835 204 LVDVGGGTGTLASAIAKKFPHIECT-VFDQ-PHVVADLKS-NGNLKYVGGNMFE----AIPPADAVLIKCVLHNWN---- 272 (365)
Q Consensus 204 iLDiG~G~G~~~~~l~~~~p~~~~~-~~D~-~~~~~~a~~-~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~~~---- 272 (365)
|+|+=||.|.+...+.+. +.+++ .+|. +..++..+. ... .+..+|+.+ ..++.|+++...-+..++
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999999876 45554 5777 555554443 222 445677776 245789998876655444
Q ss_pred ----hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 273 ----DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 273 ----~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
++..-.++.+..++++-. .-+++++|.+..-.. ........+|.+.|++.||.+
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~--~P~~~v~ENV~~l~~--------------------~~~~~~~~~i~~~l~~~GY~v 135 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEK--KPKFFLLENVKGLVS--------------------HDKGRTFKVIIETLEELGYKV 135 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhc--CCCEEEeeccHHHHh--------------------cccchHHHHHHHHHHhCCCEE
Confidence 122234555555554321 126777776542110 011124577888889999986
Q ss_pred ce
Q 017835 349 YK 350 (365)
Q Consensus 349 ~~ 350 (365)
..
T Consensus 136 ~~ 137 (315)
T TIGR00675 136 YY 137 (315)
T ss_pred EE
Confidence 43
No 389
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=82.28 E-value=1.1 Score=43.61 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=54.3
Q ss_pred HHHcCcccccccCCCC-CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch-hhhcCCC
Q 017835 39 AIQLGIPDIIHNHAKP-MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK-LLLKDHP 115 (365)
Q Consensus 39 a~~lglf~~L~~~~~~-~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 115 (365)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.++ ++..+.|
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK----RETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 4566677777753 44 899999999999 678999999999999999886532 57799999998 5555554
No 390
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=82.27 E-value=1.1 Score=44.21 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=49.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
..|+..|... ++.|..+||+.+++ +...+.++++-|.+.|+++..... ...|.+|+.++.+..
T Consensus 9 ~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~~----~~~i~LTeeG~~~~~ 71 (489)
T PRK04172 9 KKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEERV----EEVYVLTEEGKKYAE 71 (489)
T ss_pred HHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEeee----EEEEEECHHHHHHHH
Confidence 3444555543 68999999999999 679999999999999999987421 356999999985443
No 391
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=82.18 E-value=2.6 Score=28.70 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHHcCcccccccCCCCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 35 SLKCAIQLGIPDIIHNHAKPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 35 ~L~~a~~lglf~~L~~~~~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|...+..|-+ .. |..+ |..+||+.+++ +..-+++-|+.|.+.|+++...
T Consensus 8 ~l~~~I~~g~~---~~-g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 8 QLRQAILSGRL---PP-GDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp HHHHHHHTTSS----T-TSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHcCCC---CC-CCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 34444444444 22 3578 99999999999 5788999999999999999875
No 392
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.16 E-value=7.7 Score=34.08 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=64.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-----hHHHHhcccCCCeEEEeCCCCCCCC------CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-----PHVVADLKSNGNLKYVGGNMFEAIP------PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~~i~~~~~d~~~~~~------~~D~i~~~ 265 (365)
++++.+||-+|.++|.....+... .|+--+..++. -..+..|++..+|--+..|...|.. -.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 688999999999999987777664 45555555554 2455666666777777778776643 2565544
Q ss_pred cccccCChhHHHHHHH-HHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEECVKILK-NCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~-~i~~~L~p~~~gG~lli~e~ 301 (365)
+.+.++...++. ++.-.|++ ||.++|.-.
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk~---gGhfvisik 262 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLKN---GGHFVISIK 262 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhcc---CCeEEEEEe
Confidence 333333344444 78888998 888877543
No 393
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=82.04 E-value=0.89 Score=32.25 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=39.7
Q ss_pred HcCcccccccCC-CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHA-KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~-~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..+++.|+.+. .+.+..+|+..+|. |++.+-..++.|...|++.+..
T Consensus 4 ~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 4 QYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred HHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 445566666432 68999999999998 7899999999999999999874
No 394
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=81.56 E-value=0.83 Score=40.83 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=40.7
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT 92 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~ 92 (365)
..+.+.|.+.||-.+-+||.+++|+ +..-+.|+|+-|..+|++++.+.
T Consensus 198 ~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 198 KEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence 4456666666677999999999999 46889999999999999999873
No 395
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=81.52 E-value=3.7 Score=33.34 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=57.2
Q ss_pred HHHhHHHHHHHHHHHHcCc-------ccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCcc
Q 017835 26 NIFSFVNSMSLKCAIQLGI-------PDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQE 98 (365)
Q Consensus 26 ~~~g~~~~~~L~~a~~lgl-------f~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 98 (365)
.+++-|...|+.++.+.++ +-.+.-.+.|+++.+|+..++.. |...+..-||-|...|+++..+. |.+
T Consensus 63 ~Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~---gke 137 (199)
T COG5631 63 EAFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGS---GKE 137 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCC---Cce
Confidence 4567777778888755443 22222225799999999999996 67788889999999999999863 213
Q ss_pred ceEecCccch
Q 017835 99 EGYILTSASK 108 (365)
Q Consensus 99 ~~y~~t~~~~ 108 (365)
-.|..|+.+.
T Consensus 138 vTy~vTa~G~ 147 (199)
T COG5631 138 VTYEVTALGH 147 (199)
T ss_pred EEEEEecchH
Confidence 4599888775
No 396
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.21 E-value=16 Score=27.82 Aligned_cols=81 Identities=27% Similarity=0.402 Sum_probs=47.7
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccCChhHHHH
Q 017835 209 GGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNWNDEECVK 278 (365)
Q Consensus 209 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~~~~~~~~ 278 (365)
||.|.++..+++.+ .+.+++++|. +..++.++. ..+.++.||..++ ...++.+++..- ++.....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45566766666643 3457999998 777777774 4488999999883 125777766321 3333333
Q ss_pred HHHHHHHhcccCCCCcEEEE
Q 017835 279 ILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 279 ~L~~i~~~L~p~~~gG~lli 298 (365)
+.. ..+.+.| ..++++
T Consensus 79 ~~~-~~r~~~~---~~~ii~ 94 (116)
T PF02254_consen 79 IAL-LARELNP---DIRIIA 94 (116)
T ss_dssp HHH-HHHHHTT---TSEEEE
T ss_pred HHH-HHHHHCC---CCeEEE
Confidence 333 3444555 455554
No 397
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.13 E-value=15 Score=36.46 Aligned_cols=95 Identities=14% Similarity=0.225 Sum_probs=60.5
Q ss_pred cCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCC--------------CC-------
Q 017835 199 EGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMF--------------EA------- 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~--------------~~------- 255 (365)
.++.+|+=+|||.-.+ +...++.. +++++++|. ++..+.+++. ..++...|.. .+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4678999999998655 55556555 568999998 8888887752 2222111110 01
Q ss_pred -----CCCceEEEeccccccCChhHHHHH-HHHHHHhcccCCCCcEEEEEee
Q 017835 256 -----IPPADAVLIKCVLHNWNDEECVKI-LKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 256 -----~~~~D~i~~~~vlh~~~~~~~~~~-L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..++|+++-.--. +......+ .++..+.+|| ||+++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCC---CCEEEEEcc
Confidence 1358998876543 22112334 5899999999 898777654
No 398
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=80.84 E-value=5.5 Score=38.38 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC--eEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CCC---CceEEEe
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHI--ECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AIP---PADAVLI 264 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~~---~~D~i~~ 264 (365)
...+.|+|.|.|.-.-.+...+++. .++.+|. ..|...... ..++.+...-+.. |.+ .||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 4678888888776555555555443 4677887 445444432 1122222212222 333 3999999
Q ss_pred ccccccCChh-HHHHHHHHHHH-hcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDE-ECVKILKNCKK-AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~-~~~~~L~~i~~-~L~p~~~gG~lli~e~~~ 303 (365)
++++|++... ....+.++.++ ..++ |+.++++|.-.
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~ 318 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGT 318 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCC
Confidence 9999998643 33455555554 5677 88999998543
No 399
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=80.56 E-value=1.6 Score=36.18 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL 89 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 89 (365)
.++..|++.|.. ++..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 14 ~~D~~IL~~Lq~-d~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 14 RIDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHhcc-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEE
Confidence 467888999987 489999999999999 57889999999999999985
No 400
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=80.34 E-value=2.1 Score=33.14 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|++|||+.+.+ .+++++.+|+.|.+.|+++...
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 5799999999999999999974
No 401
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=80.18 E-value=10 Score=34.84 Aligned_cols=84 Identities=19% Similarity=0.074 Sum_probs=47.5
Q ss_pred CCeEEEecCCcc--HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHH
Q 017835 201 LNTLVDVGGGTG--TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECV 277 (365)
Q Consensus 201 ~~~iLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~ 277 (365)
..+|.=||+|.- .++..+.+.....+++++|. +...+.+++..-......+..+...++|+|+++-. .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 357888998863 33344444432247889998 66666555322111111122112346899888653 33345
Q ss_pred HHHHHHHHhccc
Q 017835 278 KILKNCKKAIAI 289 (365)
Q Consensus 278 ~~L~~i~~~L~p 289 (365)
.+++++...++|
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 677788888887
No 402
>PF13730 HTH_36: Helix-turn-helix domain
Probab=80.02 E-value=2.3 Score=27.79 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=26.9
Q ss_pred CHHHHHHHcCCCCCCcchHHHHHHHHHhcCce
Q 017835 56 TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFF 87 (365)
Q Consensus 56 t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l 87 (365)
|.+.||+.+|+ ..+-+.+.++.|...|++
T Consensus 27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 89999999999 578899999999999985
No 403
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=79.51 E-value=3.4 Score=35.89 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHH
Q 017835 31 VNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMR 79 (365)
Q Consensus 31 ~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~ 79 (365)
....+|+.|.+.|-||. + ...|..+||+.+|+. +..+...||
T Consensus 159 rQ~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGIS---kst~~ehLR 200 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGIS---KSTLSEHLR 200 (215)
T ss_pred HHHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCCC---HHHHHHHHH
Confidence 45679999999999988 3 579999999999995 444444444
No 404
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=78.87 E-value=1.8 Score=42.25 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=52.8
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch-hhhcCCC
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK-LLLKDHP 115 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 115 (365)
.+..|+..|.......+.++||+.+|+ +...+.+.+..|.+.|+++.+... ...|.+|+.++ ++..+.|
T Consensus 7 ~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 7 EENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK----SNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 344555666542257999999999999 678999999999999999987532 46799999998 5555554
No 405
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=78.56 E-value=1.7 Score=35.58 Aligned_cols=47 Identities=9% Similarity=0.171 Sum_probs=40.8
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+..|++.|.. ++..|..+||+++|+ .+..+.+=++-|.+.|++..-
T Consensus 10 ~D~~Il~~Lq~-d~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALME-NARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 56778888886 489999999999999 578899999999999999853
No 406
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=78.33 E-value=3.1 Score=34.53 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=51.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccc
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQ-LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEE 99 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~-lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~ 99 (365)
..+.+++ |--.+.+|...++ ++ .+-. =-.|..+||+.+++ ....+.|.+..|...+|+.+.. .+
T Consensus 47 ~~~l~l~-g~k~~~Vl~~il~~~d-~~N~----v~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~------~G 111 (165)
T PF05732_consen 47 IKVLDLI-GNKAFRVLMYILENMD-KDNA----VVATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR------NG 111 (165)
T ss_pred HHHhhhh-chhHHHHHHHHHHhcC-CCCe----EEeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc------CC
Confidence 3344443 3345666666653 33 3222 13689999999999 5688999999999999999975 58
Q ss_pred eEecCccc
Q 017835 100 GYILTSAS 107 (365)
Q Consensus 100 ~y~~t~~~ 107 (365)
.|.++|.-
T Consensus 112 ~Y~iNP~~ 119 (165)
T PF05732_consen 112 AYMINPNF 119 (165)
T ss_pred eEEECcHH
Confidence 88888743
No 407
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=78.30 E-value=5.3 Score=33.84 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=55.6
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------------CCCeEEEeCCCCCCCCCceEE
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------------------NGNLKYVGGNMFEAIPPADAV 262 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------~~~i~~~~~d~~~~~~~~D~i 262 (365)
+|.=+|.|.=.+..+++-.-.+.+++++|. +..++..++ ..|+.+. .|+.......|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 566678887665555444444789999999 776766553 2333322 1222123357888
Q ss_pred Eecc-ccccC----ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 263 LIKC-VLHNW----NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 263 ~~~~-vlh~~----~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
+++- +-.+- +-....+.++.+.+.+++ |.++|++...+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppG 125 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPG 125 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTT
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEe
Confidence 7652 22111 123457888999999997 8888888766543
No 408
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=78.16 E-value=1.9 Score=38.66 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=27.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHH
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVV 236 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~ 236 (365)
-.+++|||+|||.|--.+....... ..+..+|. ..++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 4578999999999998887776642 56666776 4444
No 409
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=77.77 E-value=1.8 Score=35.23 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=41.2
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+..+++.|.. ++..+..+||+++|+ ++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~-d~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQE-DARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 46677888886 478999999999999 5688999999999999999753
No 410
>PRK05638 threonine synthase; Validated
Probab=77.70 E-value=2.4 Score=41.28 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHcC--CCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 53 KPMTLNQLLTTLQ--IHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 53 ~~~t~~~la~~~~--~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
++++..||++.++ + ....+++.|+.|...|+++.... + +....|++|+.++.
T Consensus 383 ~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~-~-g~~~~Y~Lt~~g~~ 436 (442)
T PRK05638 383 REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYR-K-GRRVYYKLTEKGRR 436 (442)
T ss_pred CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeec-C-CCcEEEEECcHHHH
Confidence 5789999999998 5 46899999999999999986310 0 11345999988864
No 411
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=77.65 E-value=3.3 Score=35.45 Aligned_cols=37 Identities=8% Similarity=0.278 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
-+.|+.|||+.+|++ ....+.+.|+.|...|+++.+.
T Consensus 24 ~~~~~~ela~~~~~~--s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAVGLR--SPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEecCC
Confidence 578999999999993 1688999999999999999974
No 412
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=77.52 E-value=3.2 Score=37.48 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=38.7
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
..++++||++++-+ ....-++.-|+.|..+|++++++ +|.|..|..+
T Consensus 137 ~~~~~~ia~~l~p~-is~~ev~~sL~~L~~~glikk~~------~g~y~~t~~~ 183 (271)
T TIGR02147 137 ADDPEELAKRCFPK-ISAEQVKESLDLLERLGLIKKNE------DGFYKQTDKA 183 (271)
T ss_pred CCCHHHHHHHhCCC-CCHHHHHHHHHHHHHCCCeeECC------CCcEEeecce
Confidence 44788999999931 15677999999999999999986 7889988765
No 413
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.77 E-value=12 Score=34.04 Aligned_cols=82 Identities=20% Similarity=0.067 Sum_probs=51.8
Q ss_pred CeEEEecCC--ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe-CCC-CCCCCCceEEEeccccccCChhHH
Q 017835 202 NTLVDVGGG--TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG-GNM-FEAIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 202 ~~iLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~-~d~-~~~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
.+|+=+|.| .|.++..+.+..+...+++.|. ......+.. -.+.... .+. ......+|+|+++- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-lgv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-LGVIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-cCcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 356666655 3566666777777777888887 555655553 2222211 222 22445689998865 44466
Q ss_pred HHHHHHHHHhccc
Q 017835 277 VKILKNCKKAIAI 289 (365)
Q Consensus 277 ~~~L~~i~~~L~p 289 (365)
.++++++...|+|
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7889999988888
No 414
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=76.43 E-value=6.1 Score=32.37 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=50.6
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCCCCCCceEEEecccc
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFEAIPPADAVLIKCVL 268 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~~~~~D~i~~~~vl 268 (365)
+|.=+|+|.+..+.+..-...+.+++.... ++.++..++ ..++.+ ..|+.+...++|+|++.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiiav-- 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIAV-- 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE-S--
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEecc--
Confidence 356688888877666444444568888887 555555442 123322 233322345689887743
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|-.....+++++...+++ +..++.
T Consensus 78 ---Ps~~~~~~~~~l~~~l~~----~~~ii~ 101 (157)
T PF01210_consen 78 ---PSQAHREVLEQLAPYLKK----GQIIIS 101 (157)
T ss_dssp ----GGGHHHHHHHHTTTSHT----T-EEEE
T ss_pred ---cHHHHHHHHHHHhhccCC----CCEEEE
Confidence 333447889999999987 555554
No 415
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=75.71 E-value=1.6 Score=32.90 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.++++++|++++++ +..-++..|+.|.+.|++-..
T Consensus 64 ~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 64 EGVHVDEIAQQLGM---SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp TTEEHHHHHHHSTS----HHHHHHHHHHHHHTTSEEES
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHhCCeEecc
Confidence 68999999999999 578999999999999998764
No 416
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=75.67 E-value=14 Score=29.77 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=61.2
Q ss_pred eEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CCC--CceEEEecccc-----ccC-C-hhHHHHHHHHHHH
Q 017835 226 ECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AIP--PADAVLIKCVL-----HNW-N-DEECVKILKNCKK 285 (365)
Q Consensus 226 ~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~~--~~D~i~~~~vl-----h~~-~-~~~~~~~L~~i~~ 285 (365)
++.++|+ +..++..++ .+|++++..+=.. ..+ +.|+++++.-- |-. + .+-..+.|+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 5789999 777777664 4689988765443 233 48888775322 111 1 2334678889999
Q ss_pred hcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 286 AIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 286 ~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.|+| ||.+.|+-..-.+.+.. + .....+|.+-|...-|.+.+...+
T Consensus 81 lL~~---gG~i~iv~Y~GH~gG~e----E----------------~~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 81 LLKP---GGIITIVVYPGHPGGKE----E----------------SEAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HEEE---EEEEEEEE--STCHHHH----H----------------HHHHHHHHHTS-TTTEEEEEEEES
T ss_pred hhcc---CCEEEEEEeCCCCCCHH----H----------------HHHHHHHHHhCCcceEEEEEEEcc
Confidence 9999 78877765432222111 0 012345555556667887777666
No 417
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=75.63 E-value=1.2 Score=33.91 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=31.7
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|++.|... +.++-++||+.+++ +..-++++|..|...|++....
T Consensus 18 Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 18 ILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 45556532 68999999999999 5789999999999999997653
No 418
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.29 E-value=17 Score=34.23 Aligned_cols=94 Identities=26% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCC---eEEEeCC-CC----C-CCC-CceEEEecccc
Q 017835 201 LNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGN---LKYVGGN-MF----E-AIP-PADAVLIKCVL 268 (365)
Q Consensus 201 ~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~---i~~~~~d-~~----~-~~~-~~D~i~~~~vl 268 (365)
..+|+=+|||+ |.++..+++.+.-.+++++|. +.-++.|++... +.....+ .- + .-. .+|+++-+.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 34999999997 555577788887789999999 888888876222 2211111 00 1 112 4899877554
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
....+..+.++++| ||++.++-.....
T Consensus 248 -------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 14478889999999 9999998776554
No 419
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=74.94 E-value=4.6 Score=35.90 Aligned_cols=95 Identities=15% Similarity=0.284 Sum_probs=50.0
Q ss_pred CCCeEEEecCCccHHHHHHHH---HC--CCCeEEEeec----hHHHH-----------------------hcc----c--
Q 017835 200 GLNTLVDVGGGTGTLASAIAK---KF--PHIECTVFDQ----PHVVA-----------------------DLK----S-- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~---~~--p~~~~~~~D~----~~~~~-----------------------~a~----~-- 241 (365)
-...|+|+||-.|..+..+.. .+ ++-++.++|- |+.-. ..+ +
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 347999999999987765433 33 4556778773 22111 000 0
Q ss_pred --CCCeEEEeCCCCCCCCC--ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 242 --NGNLKYVGGNMFEAIPP--ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 242 --~~~i~~~~~d~~~~~~~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.++++++.|.|.+.+|. .+-|-+-++=-++-+ -....|..++..|.| ||.|++
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYe-sT~~aLe~lyprl~~---GGiIi~ 210 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYE-STKDALEFLYPRLSP---GGIIIF 210 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHH-HHHHHHHHHGGGEEE---EEEEEE
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccchH-HHHHHHHHHHhhcCC---CeEEEE
Confidence 36899999999775442 122211111112222 247889999999999 565555
No 420
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=74.20 E-value=2.9 Score=37.31 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=38.6
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|.+.|... +..+++|||+.+++ .+.-++|-|+.|.+.|++.+..
T Consensus 9 ~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 9 ILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 356667653 78999999999999 5788999999999999999875
No 421
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=74.11 E-value=3.7 Score=33.90 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+|+|+.||++++|+ ....+..-|+.|...|++.+.-
T Consensus 39 ~~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 39 RKPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence 489999999999999 5788999999999999999864
No 422
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=73.81 E-value=4.2 Score=31.77 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 19 SQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 19 ~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
+....++++-+=|..-+|....+ ++....||...++ + .+..|.+-|+.|...|++++..-.+-.-
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~~Pp 77 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPEEPP 77 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCCCCc
Confidence 35567777777777777776532 5888999999988 8 5789999999999999999975210000
Q ss_pred cceEecCccchhhh
Q 017835 98 EEGYILTSASKLLL 111 (365)
Q Consensus 98 ~~~y~~t~~~~~l~ 111 (365)
.-.|++|+.++-|.
T Consensus 78 rveY~LT~~G~~L~ 91 (120)
T COG1733 78 RVEYRLTEKGRDLL 91 (120)
T ss_pred eeEEEEhhhHHHHH
Confidence 13599999887444
No 423
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.89 E-value=59 Score=28.32 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=50.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec--hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ--PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDE 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~ 274 (365)
+....||-.||..|..+.+|++.| .++++...-. ..|...+. ..++.....|+. +++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~-~~gl~~~kLDV~------------------~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI-QFGLKPYKLDVS------------------KPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH-hhCCeeEEeccC------------------ChH
Confidence 456799999999999999999886 3455555543 33433332 345665666653 455
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++.++..+++.- | .|+|=+.
T Consensus 66 ~V~~v~~evr~~--~---~Gkld~L 85 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--P---DGKLDLL 85 (289)
T ss_pred HHHHHHHHHhhC--C---CCceEEE
Confidence 667777777665 4 5766543
No 424
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=72.69 E-value=3.7 Score=38.09 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=42.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
..|++.|.. +.+.+.++||+++++ ....+.+.|+.|...|+..+... ...|++.+..
T Consensus 7 ~~il~~L~~-~~~~s~~~LA~~lgv---sr~tV~~~l~~L~~~G~~i~~~~-----~~Gy~L~~~~ 63 (319)
T PRK11886 7 LQLLSLLAD-GDFHSGEQLGEELGI---SRAAIWKHIQTLEEWGLDIFSVK-----GKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceEEec-----CCeEEecCcc
Confidence 345566664 368999999999999 57899999999999999544321 3468775543
No 425
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=72.63 E-value=6.6 Score=36.87 Aligned_cols=35 Identities=26% Similarity=0.620 Sum_probs=30.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQP 233 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~ 233 (365)
+.+...++|+|.|.|+++.-|.-.| ++.+.++|-.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 5678899999999999999887766 7899999973
No 426
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=72.17 E-value=4.9 Score=29.24 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.-+|+..|++++++ +-.+.++.||.|...|++....
T Consensus 40 K~ITps~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGI---KISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcc---hHHHHHHHHHHHHHCCCEEEEe
Confidence 56899999999999 6899999999999999997764
No 427
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=72.16 E-value=2.9 Score=37.39 Aligned_cols=46 Identities=9% Similarity=0.152 Sum_probs=39.1
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|.+.|... +.+++.|||+.+++ .+.-++|-|..|...|++.+..
T Consensus 8 ~~Il~~l~~~-~~~~~~ela~~l~v---S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 8 DAIIELVKQQ-GYVSTEELVEHFSV---SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHc-CCEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 3456667653 78999999999999 5788999999999999999874
No 428
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=72.12 E-value=32 Score=33.87 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=60.0
Q ss_pred CeEEEecCCccHHHHHH--HHHCCCCeEEEeec-hHHHHhcccC-----------------C-CeEEEeCCCCCCCCCce
Q 017835 202 NTLVDVGGGTGTLASAI--AKKFPHIECTVFDQ-PHVVADLKSN-----------------G-NLKYVGGNMFEAIPPAD 260 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l--~~~~p~~~~~~~D~-~~~~~~a~~~-----------------~-~i~~~~~d~~~~~~~~D 260 (365)
.+|.=||.|......+. ++...+.+++++|. +..++..++. . ++.+ ..|+.+.....|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i~~ad 80 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHVAEAD 80 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHHhcCC
Confidence 36777888887776554 44445688999998 7777765430 0 1111 112211234578
Q ss_pred EEEec-cccc---------cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 261 AVLIK-CVLH---------NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 261 ~i~~~-~vlh---------~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
+|+++ .+-. ..+-.......+.+.+.|++ |.++|.+...+..
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~----~~lVv~~STvp~G 132 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS----DKIVVEKSTVPVK 132 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC----CcEEEEeCCCCCC
Confidence 88664 2221 12223567888889999987 7788877666543
No 429
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=72.09 E-value=1.7 Score=33.78 Aligned_cols=65 Identities=17% Similarity=0.342 Sum_probs=44.9
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCCC--CCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQIH--PTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~~--~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
..+.-|++.|...+.+.|+++|-+.+.-. ..+..-++|-|+.|...|++.+...+ ++ ...|....
T Consensus 8 ~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~-~~-~~~Y~~~~ 74 (120)
T PF01475_consen 8 PQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFG-DG-ESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEET-TS-EEEEEESS
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcC-CC-cceEeecC
Confidence 34555677777655799999999988531 11445699999999999999997532 11 34577664
No 430
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=72.08 E-value=2.7 Score=29.77 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=24.3
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++..|.. |.|+|+++||.++|+ +...++..|..+ -=.+++.
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~---p~tEyD~ 69 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAM---PDTEYDD 69 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH----TTSEEET
T ss_pred HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhC---CCceEcC
Confidence 5566776 589999999999999 445555555444 3355553
No 431
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=71.95 E-value=14 Score=33.34 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCe----EEEeechHHHHhcccCCCeEEEeC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIE----CTVFDQPHVVADLKSNGNLKYVGG 250 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~~i~~~~~ 250 (365)
+...||=+|++.|.....|.+.||+.+ .+.+|..+.....++..+|+++..
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~ 112 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQR 112 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehh
Confidence 347999999999999999999998865 899998666666666666877764
No 432
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=71.87 E-value=56 Score=27.01 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=63.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCC--CC-----CceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA--IP-----PADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~--~~-----~~D~i~~~~vlh~~ 271 (365)
.+..+|+-|||=+-.....- ...++.++..+|...-.+... +. .|+-.|..+| +| .+|+|++---+ +
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF--l 97 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFG--GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF--L 97 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcC--Cc-ceEECCCCChhhhhhhcCCCceEEEECCCC--C
Confidence 45689999998877665433 246788899999866555532 33 6777788774 33 49999986554 5
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.+-..++.+.++.++++ ++++++...
T Consensus 98 ~~ec~~k~a~ti~~L~k~---~~kii~~Tg 124 (162)
T PF10237_consen 98 SEECLTKTAETIRLLLKP---GGKIILCTG 124 (162)
T ss_pred CHHHHHHHHHHHHHHhCc---cceEEEecH
Confidence 555445666666666777 788887543
No 433
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=71.71 E-value=27 Score=30.51 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=42.1
Q ss_pred cCCCeEEEecCCccHHH--HHHHHHCCCCeEEEe--ec-hHHHHhcccCCCeEEEeCCCCC-CCCCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLA--SAIAKKFPHIECTVF--DQ-PHVVADLKSNGNLKYVGGNMFE-AIPPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~--~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~ 265 (365)
..+.+||=||||.-..- ..|++. +++++++ +. +++.+.+. ..+++++..++.. ...++++|++.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~-~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK-YGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh-CCCEEEEeCCCChHHhCCCcEEEEC
Confidence 45679999999988764 334444 4566665 44 44444333 6789999887765 45568877774
No 434
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=71.66 E-value=5.7 Score=27.04 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+++.+++.++.|.+ -.......|+.+...|+++.+ ++++++|+.+.
T Consensus 19 ~Gi~~~~~~~~~g~~--~~~~~~~~l~~l~~~Gll~~~-------~~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGID--FAEEFQKELEELQEDGLLEID-------GGRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT----THHH-HHHHHHHHHTTSEEE--------SSEEEE-TTTG
T ss_pred CCcCHHHHHHHHCcC--HHHHHHHHHHHHHHCCCEEEe-------CCEEEECcccC
Confidence 578899999999984 234557789999999999998 59999998774
No 435
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=71.56 E-value=44 Score=25.73 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=55.4
Q ss_pred CccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCC---C---C-CC--CceEEEeccccccCChhHHHHH
Q 017835 210 GTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMF---E---A-IP--PADAVLIKCVLHNWNDEECVKI 279 (365)
Q Consensus 210 G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~---~---~-~~--~~D~i~~~~vlh~~~~~~~~~~ 279 (365)
|.|.++..+++... .+++++|. +.-.+.+++..--.++..+-. + . .+ .+|+++-+-- . ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~---~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S---GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S---HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c---HHH
Confidence 46888999999886 99999998 666777775331122222111 1 1 23 4888876432 1 357
Q ss_pred HHHHHHhcccCCCCcEEEEEeeec
Q 017835 280 LKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 280 L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
++...+.++| +|+++++-...
T Consensus 72 ~~~~~~~l~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRP---GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEE---EEEEEEESSTS
T ss_pred HHHHHHHhcc---CCEEEEEEccC
Confidence 8889999999 89999988765
No 436
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.32 E-value=91 Score=28.96 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=65.3
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCC----------CC--CceEE
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA----------IP--PADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~----------~~--~~D~i 262 (365)
.+.+.++|=+|+|+ |..+...++.+.-.++++.|+ +.-++.|++ ...+.........+ .. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 57789999999997 556666777787789999999 888999887 11111111111110 11 27887
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
+-+..++ ..++..-.++++ ||.++++.+..+.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAEE 278 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccCCCc
Confidence 7766653 346666778898 8998888765443
No 437
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=70.14 E-value=4.7 Score=31.15 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|++|||..+++ +...++.++--|...|++....
T Consensus 54 ~~~SVAEiAA~L~l---PlgVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 54 RPLSVAEIAARLGL---PLGVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred CCccHHHHHHhhCC---CchhhhhhHHHHHhCCCEEEeC
Confidence 59999999999999 4688999999999999999864
No 438
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=69.88 E-value=17 Score=33.30 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=59.6
Q ss_pred CCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC---CCCCceEEEeccccccCCh
Q 017835 201 LNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE---AIPPADAVLIKCVLHNWND 273 (365)
Q Consensus 201 ~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~---~~~~~D~i~~~~vlh~~~~ 273 (365)
..+|.=||+|. |..+..++--. +..++.+|+ ..-+.+... ..|+.....+... ....+|+++-.-.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 46788889886 45566666543 679999998 566666554 5677776655444 3567999877544422233
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEE
Q 017835 274 EECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+ .-+.++..+.|+| |+.|+
T Consensus 247 P--kLvt~e~vk~Mkp---GsViv 265 (371)
T COG0686 247 P--KLVTREMVKQMKP---GSVIV 265 (371)
T ss_pred c--eehhHHHHHhcCC---CcEEE
Confidence 3 3456788899999 66443
No 439
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.82 E-value=25 Score=36.64 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=83.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------------------CCCeEEEeCCCCCC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------------------NGNLKYVGGNMFEA 255 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~~~ 255 (365)
+..+|.=||+|+=...++..-...+.+++.+|. ++.++.+.. ..|+++. .|+ +.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AG 389 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 346899999999777666665566899999998 666554321 2455543 233 33
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee-ecCCCccCccchhhhhhhhhhhh--------hc
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI-KMESEKADYKTTETQLFMDMLMM--------VL 326 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~-~~~~~~~~~~~~~~~~~~d~~~~--------~~ 326 (365)
..+.|+|+=. +..++.-. .++++++-+.++| ..++.... .++-..-.........+..+... ..
T Consensus 390 ~~~aDlViEa-v~E~l~~K--~~vf~~l~~~~~~----~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVE 462 (715)
T PRK11730 390 FERVDVVVEA-VVENPKVK--AAVLAEVEQKVRE----DTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (715)
T ss_pred hcCCCEEEec-ccCcHHHH--HHHHHHHHhhCCC----CcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEE
Confidence 4568877643 44433333 7899999999998 45554432 22110000000000011111110 00
Q ss_pred -cCcc---ccCHHHHHHHHHhcCCccceEEEcCCc
Q 017835 327 -VKGE---ERNEKEWAKLFFEAGFSDYKITDVLGV 357 (365)
Q Consensus 327 -~~~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 357 (365)
..+. ..+.+...++++..|...+.+...+|+
T Consensus 463 vv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 463 VIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 0111 225567788888999998888777775
No 440
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=69.62 E-value=8.1 Score=34.96 Aligned_cols=66 Identities=9% Similarity=0.103 Sum_probs=51.4
Q ss_pred hHHHHhccc-CCCeEEEeCCCCC-----CCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 233 PHVVADLKS-NGNLKYVGGNMFE-----AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 233 ~~~~~~a~~-~~~i~~~~~d~~~-----~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.+.+.+++ ..||.++.+|+.+ |..+.|-|++..+-.-+++.+...++.+|++.+.| |.++++-..
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifRta 367 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFRTA 367 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEecc
Confidence 344444443 6789999999877 33468999999888878999999999999999999 777776543
No 441
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=69.53 E-value=4.6 Score=39.27 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=40.3
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 45 PDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 45 f~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
...|.. +|.|+.||++.+++ ....+.+.|+.| .|++...+.+ ..-+|+++...
T Consensus 6 ~~~L~~--g~~~~~eL~~~l~~---sq~~~s~~L~~L--~~~V~~~~~g---r~~~Y~l~~~~ 58 (442)
T PRK09775 6 TTLLLQ--GPLSAAELAARLGV---SQATLSRLLAAL--GDQVVRFGKA---RATRYALLRPL 58 (442)
T ss_pred HHHHhc--CCCCHHHHHHHhCC---CHHHHHHHHHHh--hcceeEeccC---ceEEEEecccc
Confidence 345554 89999999999999 678999999999 8888876621 12357777644
No 442
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=69.14 E-value=21 Score=30.79 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=42.0
Q ss_pred CCCeEEEecCCccHHH--HHHHHHCCCCeEEEeec--hHHHHhcccCCCeEEEeCCCCC-CCCCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLA--SAIAKKFPHIECTVFDQ--PHVVADLKSNGNLKYVGGNMFE-AIPPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~--~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~ 265 (365)
.+++||=||+|.-... ..|++. ++++++++. .+.+....+..+++++.+++.. .+..+|+|+++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 3579999999976543 334443 568888875 2233333335689999988765 45578888774
No 443
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=69.13 E-value=15 Score=32.14 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
-+.|-++||+.+|+ ....+.|.|+.|...|+++..+ .+.+...+
T Consensus 178 i~lt~~~IA~~lGi---sretlsR~L~~L~~~GlI~~~~------~~~i~I~D 221 (230)
T PRK09391 178 LPMSRRDIADYLGL---TIETVSRALSQLQDRGLIGLSG------ARQIELRN 221 (230)
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC------CceEEEcC
Confidence 47899999999999 5788999999999999998763 25566543
No 444
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=68.92 E-value=12 Score=33.45 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=63.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCCC---CceEEEeccccccCChh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIP---PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~---~~D~i~~~~vlh~~~~~ 274 (365)
+.++..-+|+|.-.|+.+-.|.++ ++.++.+|-..|.+..-...+|+....|-++-.| +.|-.+|-.| ..+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV----EkP 282 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV----EKP 282 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh----cCc
Confidence 568899999999999999999988 7899999987787777778899999999988433 3666655433 223
Q ss_pred HHHHHHHHHHHhccc
Q 017835 275 ECVKILKNCKKAIAI 289 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p 289 (365)
.++-..|...|..
T Consensus 283 --~rv~~li~~Wl~n 295 (358)
T COG2933 283 --ARVAALIAKWLVN 295 (358)
T ss_pred --HHHHHHHHHHHHc
Confidence 3445556666764
No 445
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=68.76 E-value=51 Score=28.11 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCeEEEecCCccHHHHHHHH----HCCCCeEEEeech--HHHHhcccCCCeEEEeCCCCCCC--------C-Cc-eEEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAK----KFPHIECTVFDQP--HVVADLKSNGNLKYVGGNMFEAI--------P-PA-DAVL 263 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~----~~p~~~~~~~D~~--~~~~~a~~~~~i~~~~~d~~~~~--------~-~~-D~i~ 263 (365)
.+..|+++|.-.|.-++.++. .....+++++|+. +.-..+.+..+|.++.++-.+|. . .| -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 457999999888877666554 3344688888872 22233444789999999887741 1 23 3444
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
+-..-|+. +.+...|+-....|.- |..++|.|....+-.
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhc---CceEEEecccccCCC
Confidence 54555533 3345667777778887 788888887776544
No 446
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=68.64 E-value=48 Score=27.13 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=46.0
Q ss_pred cCCCeEEEecCCccHH--HHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC-CCCCceEEEeccccccCChhH
Q 017835 199 EGLNTLVDVGGGTGTL--ASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE-AIPPADAVLIKCVLHNWNDEE 275 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~--~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~ 275 (365)
-.+++||=||||.=.. +..|++. +.++++++ |+..+...+...+++....+.+ ...++|++++.- ++++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT-----~d~e 82 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT-----NQHA 82 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEECC-----CCHH
Confidence 3568999999987655 3344554 56777776 4333333333466666655554 455789888732 4444
Q ss_pred HHHHHHHHHH
Q 017835 276 CVKILKNCKK 285 (365)
Q Consensus 276 ~~~~L~~i~~ 285 (365)
.-..+...++
T Consensus 83 ~N~~i~~~a~ 92 (157)
T PRK06719 83 VNMMVKQAAH 92 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 447
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=68.38 E-value=3.8 Score=26.10 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=18.9
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF 86 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~ 86 (365)
+.|..+||+.+|+ +..-+.+|++.....|+
T Consensus 17 G~s~~~ia~~lgv---s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 17 GWSIREIAKRLGV---SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp T--HHHHHHHHTS----HHHHHHHHT-------
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHcccccc
Confidence 7999999999999 57899999998776664
No 448
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.93 E-value=24 Score=33.92 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=67.0
Q ss_pred cCCCeEEEecC-CccHH--HHHHHHH----CCCCeEEEeec--hHHHHhccc---CCCeEEEeCCCCC-CC---------
Q 017835 199 EGLNTLVDVGG-GTGTL--ASAIAKK----FPHIECTVFDQ--PHVVADLKS---NGNLKYVGGNMFE-AI--------- 256 (365)
Q Consensus 199 ~~~~~iLDiG~-G~G~~--~~~l~~~----~p~~~~~~~D~--~~~~~~a~~---~~~i~~~~~d~~~-~~--------- 256 (365)
+++..|+=+|= |+|-. +..|+.. .-..-++..|. |..+++.+. .-+|.|...+-.. |.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 34677888873 45533 3334433 23334577786 888888875 4556665543222 32
Q ss_pred ---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 257 ---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 257 ---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
..+|++++--.=-|.-|++...-+++|+++++| .-.|+|+|.....+
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~GQd 227 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIGQD 227 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccchH
Confidence 137999885333222366678889999999999 79999999876544
No 449
>PHA01634 hypothetical protein
Probab=67.54 E-value=10 Score=29.93 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=31.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 241 (365)
.+++|+|||++.|..++.++-+.. -+++.++. +...+..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHH
Confidence 468999999999999999987732 36788887 555555543
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=67.53 E-value=5.2 Score=33.34 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=40.4
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCCC--CCCcchHHHHHHHHHhcCceeccc
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQIH--PTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~~--~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
-.+.-|++.|...++++|+++|.+.+.-. ..+..-++|.|+.|+..|++.+-.
T Consensus 26 ~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 26 PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 34556677776545799999999888532 114567999999999999999874
No 451
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=67.16 E-value=8.5 Score=32.89 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+.|.++||+.+|+ ....+.|.|+.|...|++...+
T Consensus 168 ~~t~~~lA~~lG~---tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGC---SREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 7999999999999 5789999999999999999874
No 452
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=66.89 E-value=7.5 Score=29.54 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.-+|+..||+++++ .-.+.++.|+.|.+.|++....
T Consensus 58 K~ITp~~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 93 (105)
T PF03297_consen 58 KLITPSVLSERLKI---NGSLARKALRELESKGLIKPVS 93 (105)
T ss_dssp SCECHHHHHHHHCC---SCHHHHHHHHHHHHCCSSEEEE
T ss_pred cEeeHHHHHHhHhh---HHHHHHHHHHHHHHCCCEEEEe
Confidence 45899999999999 6799999999999999998875
No 453
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.84 E-value=11 Score=31.56 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=30.7
Q ss_pred CceEEEeccccccCCh----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 258 PADAVLIKCVLHNWND----------EECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
..|+|++++.||+++. +...+++.+++.+|+| +.++|.....|
T Consensus 50 ~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~P 102 (183)
T cd01842 50 RLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMP 102 (183)
T ss_pred ceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCC
Confidence 3699999999998864 3456777777778877 45555554444
No 454
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=66.74 E-value=8.2 Score=33.74 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
-++|.++||+.+|+ ....+.|.|+.|...|++...+ +.+...+
T Consensus 183 ~~lt~~~iA~~lG~---sr~tvsR~l~~l~~~g~I~~~~-------~~i~i~d 225 (235)
T PRK11161 183 LTMTRGDIGNYLGL---TVETISRLLGRFQKSGMLAVKG-------KYITIEN 225 (235)
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC-------CEEEEcC
Confidence 37899999999999 5788999999999999999884 5665554
No 455
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=65.96 E-value=5.2 Score=36.12 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=39.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
...|.+.|... +..|+.|||+.+++ .+.-++|=|+.|.+.|++.+..
T Consensus 19 ~~~Il~~L~~~-~~vtv~eLa~~l~V---S~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 19 REQIIQRLRQQ-GSVQVNDLSALYGV---STVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHHCC---CHHHHHHHHHHHHhCCCeEEEe
Confidence 34466677653 68999999999999 5788999999999999999874
No 456
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=65.96 E-value=6.8 Score=34.73 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=37.5
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|.+.|... +..++++||+.+++ .+.-++|.|..|...|.+.+..
T Consensus 9 Il~~l~~~-~~~~~~eLa~~l~V---S~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 9 IVDLLLNH-TSLTTEALAEQLNV---SKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 55666653 79999999999999 5789999999999999998764
No 457
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=65.91 E-value=14 Score=28.93 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=52.7
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHH
Q 017835 59 QLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVS 138 (365)
Q Consensus 59 ~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 138 (365)
+||+.+++ +-+-+--+++++.-+||++.. +|-..+|+.|+.++..+......++.-... ...+....+.
T Consensus 2 ~La~~l~~---eiDdL~p~~eAaelLgf~~~~-------~Gdi~LT~~G~~f~~a~~~~rK~if~~~l~-~~~Pl~~~I~ 70 (120)
T PF09821_consen 2 QLADELHL---EIDDLLPIVEAAELLGFAEVE-------EGDIRLTPLGRRFAEADIDERKEIFREQLL-RHVPLAAHIR 70 (120)
T ss_pred chHHHhCC---cHHHHHHHHHHHHHcCCeeec-------CCcEEeccchHHHHHCChHHHHHHHHHHHH-hcCCHHHHHH
Confidence 47888888 567888999999999999998 589999999997775543333333332211 1234445677
Q ss_pred HHhhcCC
Q 017835 139 TWIQNDD 145 (365)
Q Consensus 139 ~~l~~~~ 145 (365)
..++...
T Consensus 71 ~~L~~~~ 77 (120)
T PF09821_consen 71 RVLRERP 77 (120)
T ss_pred HHHHhCC
Confidence 7776653
No 458
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=65.66 E-value=9 Score=32.14 Aligned_cols=36 Identities=8% Similarity=0.156 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
-|+|-++||+.+|+ ....+.|.|+.|...|++...+
T Consensus 142 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 142 LRLSHQAIAEAIGS---TRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 47999999999999 5789999999999999999874
No 459
>PF13518 HTH_28: Helix-turn-helix domain
Probab=65.46 E-value=9.8 Score=24.21 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=26.6
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF 86 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~ 86 (365)
+.|..++|..+|+ +...+.+|++.....|+
T Consensus 12 g~s~~~~a~~~gi---s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 12 GESVREIAREFGI---SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCCHHHHHHHHCC---CHhHHHHHHHHHHhcCH
Confidence 3499999999999 57899999999998885
No 460
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=65.23 E-value=42 Score=31.18 Aligned_cols=94 Identities=12% Similarity=0.158 Sum_probs=54.6
Q ss_pred ccCCCeEEEecCCcc-HHHHHHHHH-CCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChh
Q 017835 198 FEGLNTLVDVGGGTG-TLASAIAKK-FPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDE 274 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G-~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~ 274 (365)
..++.+||=+|||.= .++..++++ ....+++++|. +.-.+.++..... ....+. .....+|+|+-.-- .+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~-~~~~g~d~viD~~G-----~~ 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDI-PEDLAVDHAFECVG-----GR 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhh-hhccCCcEEEECCC-----CC
Confidence 356789998986543 344556665 55668888887 5555655542221 111111 11124787764321 10
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.....+....+.+++ ||+++++-.
T Consensus 234 ~~~~~~~~~~~~l~~---~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIRP---QGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCcC---CcEEEEEee
Confidence 013467888889999 999998764
No 461
>PRK08507 prephenate dehydrogenase; Validated
Probab=64.88 E-value=28 Score=31.38 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=45.8
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHH
Q 017835 203 TLVDVGGGT--GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKI 279 (365)
Q Consensus 203 ~iLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 279 (365)
+|.=||+|. +.++..|.+.....+++++|. +...+.+....-+.. ..+. .+...+|+|+++- ++....++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEEeC-----cHHHHHHH
Confidence 466677765 345555555433457888898 555555543221111 1121 1223488887754 55666788
Q ss_pred HHHHHHhccc
Q 017835 280 LKNCKKAIAI 289 (365)
Q Consensus 280 L~~i~~~L~p 289 (365)
++++.. ++|
T Consensus 75 ~~~l~~-l~~ 83 (275)
T PRK08507 75 LPKLLD-IKE 83 (275)
T ss_pred HHHHhc-cCC
Confidence 888888 887
No 462
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=64.68 E-value=7 Score=31.00 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=36.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHc----CCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTL----QIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~----~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|...|-.. ++.|+.+|.+.+ ++ ...-+..+|+-|...|++....
T Consensus 6 E~~VM~vlW~~-~~~t~~eI~~~l~~~~~~---~~tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 6 EWEVMRVVWTL-GETTSRDIIRILAEKKDW---SDSTIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHhhccCC---cHHHHHHHHHHHHHCCceeeec
Confidence 44555666543 689999977766 55 4678999999999999999764
No 463
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=64.14 E-value=4.9 Score=28.31 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL 89 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 89 (365)
.+.|..|||+.+|+ ++..++.++..+...|.+.+
T Consensus 31 eGlS~kEIAe~LGI---S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGR---TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHhcCcccchHHH
Confidence 58999999999999 57889999998888887764
No 464
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=63.83 E-value=46 Score=30.05 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=47.9
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHH
Q 017835 203 TLVDVGGGT--GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKI 279 (365)
Q Consensus 203 ~iLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 279 (365)
+|.=||+|. |.++..|.+. +.+++++|. +...+.+.....+.....+. +...++|+|+++- +.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 456677775 3445555444 568999998 66666665432222111111 1234689988864 55566778
Q ss_pred HHHHHHhccc
Q 017835 280 LKNCKKAIAI 289 (365)
Q Consensus 280 L~~i~~~L~p 289 (365)
++++...++|
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 8899888887
No 465
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=63.78 E-value=15 Score=35.81 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=70.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC----------CCCCceE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE----------AIPPADA 261 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~----------~~~~~D~ 261 (365)
.....+|-||-|+|.+...+...+|..+++++++ |.+++.+++ ..|..++-.|-.. ....||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 3456788888888999999999999999999998 999999885 3334443333332 1124898
Q ss_pred EEe----ccccccC--Ch--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 262 VLI----KCVLHNW--ND--EECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 262 i~~----~~vlh~~--~~--~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
++. .. .|-+ +. --+..+|..++..|+| .|.+ ++..+..+..
T Consensus 374 l~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f-~inlv~r~~~ 422 (482)
T KOG2352|consen 374 LMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPP---RGMF-IINLVTRNSS 422 (482)
T ss_pred EEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCc---cceE-EEEEecCCcc
Confidence 876 23 3433 22 2346789999999999 4555 6666655543
No 466
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=63.25 E-value=40 Score=30.88 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=55.4
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---------CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGG-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---------AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---------~~~~~D~i~~~~ 266 (365)
+.++.+||..|+| .|..+..+++.. +.+++.++. +...+.+++. .+..+..+-.. ....+|+++-+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL-GADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-CCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 4566788888876 478888888875 577888876 5555555431 12111111111 112488876532
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
-. ...++++.+.|++ +|+++.+..
T Consensus 241 g~--------~~~~~~~~~~l~~---~G~~v~~g~ 264 (338)
T cd08254 241 GT--------QPTFEDAQKAVKP---GGRIVVVGL 264 (338)
T ss_pred CC--------HHHHHHHHHHhhc---CCEEEEECC
Confidence 11 2357788899999 899888754
No 467
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=63.13 E-value=5 Score=35.91 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=39.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|.+.|... +.+++.|||+.+++ .+.-++|=|+.|...|++.+..
T Consensus 8 ~~Il~~L~~~-~~v~v~eLa~~l~V---S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 8 AAILEYLQKQ-GKTSVEELAQYFDT---TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHc-CCEEHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 4466777763 78999999999999 5688999999999999999874
No 468
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=63.04 E-value=16 Score=25.58 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=34.8
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHH--HhcCceeccccCCCCccceEec
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRIL--VHSGFFALQKTSENEQEEGYIL 103 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L--~~~g~l~~~~~~~~~~~~~y~~ 103 (365)
|.+.|.. ..+.|+++|++++|+ .+.-++-.|--+ -..|+-......+++ ...|++
T Consensus 15 li~mL~r-p~GATi~ei~~atGW---q~HTvRgalsg~~kKklGl~i~s~k~~g~-~r~YrI 71 (72)
T PF11994_consen 15 LIAMLRR-PEGATIAEICEATGW---QPHTVRGALSGLLKKKLGLTITSEKVDGG-GRRYRI 71 (72)
T ss_pred HHHHHcC-CCCCCHHHHHHhhCC---chhhHHHHHHHHHHHhcCcEEEeeecCCC-eeeEee
Confidence 3445554 378999999999999 456666666666 556766554322211 345764
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.53 E-value=6.5 Score=31.85 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=46.5
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCC--CCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQI--HPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~--~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.++.|++.|..++++.|+++|=+.+.- ++....-++|-|+.|...|++.+-... |+ ...|.....
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~~-~~-~~~y~~~~~ 88 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEFE-GG-KTRYELNSE 88 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEeC-CC-EEEEecCCC
Confidence 466778888866678999999887763 333567799999999999999986531 11 234665544
No 470
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=62.50 E-value=7.1 Score=33.91 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=35.9
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
|+..+.....+.|.+|||+++++ .+.-+++.+..|+..|++..+
T Consensus 167 Vl~~~~~g~~g~s~~eIa~~l~i---S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 167 VRKLFKEPGVQHTAETVAQALTI---SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHcCCCCcCHHHHHHHhCc---cHHHHHHHHHHHHhCCeEEEE
Confidence 45555531126899999999999 578899999999999999976
No 471
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=62.45 E-value=9 Score=26.81 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=35.5
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
|...|+. +..|.++|-+.+|+ +...+-..|.-|...|++.+.
T Consensus 10 IL~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 10 ILIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeee
Confidence 3444554 58999999999999 578899999999999999986
No 472
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=62.17 E-value=14 Score=32.10 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|..++..+||+.+|+ ...-++.-|+.|...|+++...
T Consensus 28 G~~L~e~eLae~lgV---SRtpVREAL~~L~~eGlv~~~~ 64 (224)
T PRK11534 28 DEKLRMSLLTSRYAL---GVGPLREALSQLVAERLVTVVN 64 (224)
T ss_pred CCcCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEEeC
Confidence 467899999999999 4677999999999999999875
No 473
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=62.14 E-value=34 Score=30.19 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=48.1
Q ss_pred HHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 23 VWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 23 l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+.+++.+....+=|.+.- .||+.|...++-++..+||+++|+ ....+++-++.|.+.|+++...
T Consensus 169 ~Vq~Ai~tLSySEleAv~--~IL~~L~~~egrlse~eLAerlGV---SRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 169 AVQMAINTLSYSELEAVE--HIFEELDGNEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHHHhccHhHHHHHH--HHHHHhccccccccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecc
Confidence 445555555555444442 467888752378999999999999 5688999999999999999863
No 474
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=62.11 E-value=93 Score=26.99 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=52.2
Q ss_pred cCCCeEEEecCCcc----HHHHHHHHHCCCCeEEEeec-hHHHHhcc----c---CCCeEEEeCCCCC----CCCCceEE
Q 017835 199 EGLNTLVDVGGGTG----TLASAIAKKFPHIECTVFDQ-PHVVADLK----S---NGNLKYVGGNMFE----AIPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G----~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~---~~~i~~~~~d~~~----~~~~~D~i 262 (365)
.+.+.|+++.++.| ..+...+.+..+-+++.+-. +.-....+ . .+.++|+.++-.+ .+.+.|.+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 45689999966544 23333444555556655543 22222111 1 4557888887433 34568888
Q ss_pred EeccccccCChhHHH-HHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 263 LIKCVLHNWNDEECV-KILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~-~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
+.-.= .++.. ++|+-+. +.| .|.+++......
T Consensus 120 vVDc~-----~~d~~~~vl~~~~--~~~---~GaVVV~~Na~~ 152 (218)
T PF07279_consen 120 VVDCK-----REDFAARVLRAAK--LSP---RGAVVVCYNAFS 152 (218)
T ss_pred EEeCC-----chhHHHHHHHHhc--cCC---CceEEEEecccc
Confidence 77442 33334 5555432 344 577777666554
No 475
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=61.83 E-value=1e+02 Score=28.06 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=50.2
Q ss_pred CCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCC-CCceEEEeccccccCChhHH
Q 017835 200 GLNTLVDVGGG-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAI-PPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 200 ~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~-~~~D~i~~~~vlh~~~~~~~ 276 (365)
...++|=+||| .|.++..+++...-..++++|. +.-++.+... .++ |..+.. ..+|+|+-+-- .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i--~~~~~~~~g~Dvvid~~G-----~--- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVL--DPEKDPRRDYRAIYDASG-----D--- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---ccc--ChhhccCCCCCEEEECCC-----C---
Confidence 34567777854 5667777777764334666676 5555544421 111 111112 24888765422 1
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEee
Q 017835 277 VKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 277 ~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
...+..+.+.+++ +|+++++-.
T Consensus 211 ~~~~~~~~~~l~~---~G~iv~~G~ 232 (308)
T TIGR01202 211 PSLIDTLVRRLAK---GGEIVLAGF 232 (308)
T ss_pred HHHHHHHHHhhhc---CcEEEEEee
Confidence 2456788889999 899998764
No 476
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=61.77 E-value=49 Score=28.79 Aligned_cols=97 Identities=14% Similarity=0.219 Sum_probs=58.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC--eEEEeec-hHHHHhccc----------------------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHI--ECTVFDQ-PHVVADLKS---------------------------------- 241 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~---------------------------------- 241 (365)
+..-++-|==||+|.++.-+.-.+++. ++++.|+ +.+++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 456799999999999987766555443 5788888 777776541
Q ss_pred --------------CCCeEEEeCCCCCCC-------C-CceEEEeccc---cccCC----hhHHHHHHHHHHHhcccCCC
Q 017835 242 --------------NGNLKYVGGNMFEAI-------P-PADAVLIKCV---LHNWN----DEECVKILKNCKKAIAINGK 292 (365)
Q Consensus 242 --------------~~~i~~~~~d~~~~~-------~-~~D~i~~~~v---lh~~~----~~~~~~~L~~i~~~L~p~~~ 292 (365)
.....+.+.|++++. + ..|+|+.--- .-+|. ..-...+|+.++.+|.+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 223567888999842 1 3688876422 23453 34568999999999954
Q ss_pred CcEEEE
Q 017835 293 AGKVII 298 (365)
Q Consensus 293 gG~lli 298 (365)
++.+.|
T Consensus 207 ~sVV~v 212 (246)
T PF11599_consen 207 RSVVAV 212 (246)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 455555
No 477
>PRK12423 LexA repressor; Provisional
Probab=61.74 E-value=8.5 Score=33.06 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+-|..|||+++|+. ....+++.|+.|...|+++...
T Consensus 25 ~Ps~~eia~~~g~~--s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 25 PPSLAEIAQAFGFA--SRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEecC
Confidence 56999999999963 3567899999999999999874
No 478
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=61.66 E-value=15 Score=31.50 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=30.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK 240 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 240 (365)
.++..|||-=||+|..+.+..+. +-+++++|+ +..++.|+
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 66889999999999999887776 568999999 77776654
No 479
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=61.35 E-value=7.1 Score=34.89 Aligned_cols=45 Identities=9% Similarity=0.210 Sum_probs=39.4
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|++.|... +.++++|||+.+++ .+.-++|=|+.|...|++.+..
T Consensus 9 ~Il~~l~~~-g~v~v~eLa~~~~V---S~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 9 KILELLKEK-GKVSVEELAELFGV---SEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHc-CcEEHHHHHHHhCC---CHHHHHHhHHHHHHCCcEEEEe
Confidence 456677764 79999999999999 5789999999999999999975
No 480
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.29 E-value=48 Score=34.53 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-----------------------CCCeEEEeCCCCC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-----------------------NGNLKYVGGNMFE 254 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~~ 254 (365)
+..+|.=||+|+=...++..-. ..+..++.+|. ++.++.+.. ..+|++.. |. +
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~ 385 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY-R 385 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch-H
Confidence 4578999999986666555544 55889999998 665555421 23555442 33 3
Q ss_pred CCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 255 AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 255 ~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
...+.|+|+=. +..++.-. .++++++-+.++| +.++...
T Consensus 386 ~~~~aDlViEa-v~E~~~~K--~~v~~~le~~~~~----~~ilasn 424 (708)
T PRK11154 386 GFKHADVVIEA-VFEDLALK--QQMVAEVEQNCAP----HTIFASN 424 (708)
T ss_pred HhccCCEEeec-ccccHHHH--HHHHHHHHhhCCC----CcEEEEC
Confidence 45568877654 44433333 7899999999998 4555543
No 481
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=61.22 E-value=4.9 Score=24.87 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=19.9
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCC
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIH 67 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~ 67 (365)
++..|++.|.. ++..+..+||+.+|++
T Consensus 4 ~D~~Il~~Lq~-d~r~s~~~la~~lglS 30 (42)
T PF13404_consen 4 LDRKILRLLQE-DGRRSYAELAEELGLS 30 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS-
T ss_pred HHHHHHHHHHH-cCCccHHHHHHHHCcC
Confidence 45567777776 4899999999999995
No 482
>PRK00215 LexA repressor; Validated
Probab=61.17 E-value=12 Score=32.04 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|..|||+++|+. +...+.++|+.|...|++++..
T Consensus 22 ~~~s~~ela~~~~~~--~~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 22 YPPSRREIADALGLR--SPSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEeCC
Confidence 578999999999992 2578999999999999999875
No 483
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=61.06 E-value=7.2 Score=35.48 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=47.7
Q ss_pred CCCeEEEeCCCCCCCC------C-ceEEEec-cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch
Q 017835 242 NGNLKYVGGNMFEAIP------P-ADAVLIK-CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT 313 (365)
Q Consensus 242 ~~~i~~~~~d~~~~~~------~-~D~i~~~-~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~ 313 (365)
.-+|.|++.|....++ + ||+|+++ +..|.+.++ +.++++| +.++|+|...-
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~----~A~LvvEtaKf--------- 257 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP----DAVLVVETAKF--------- 257 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC----CCEEEEEcchh---------
Confidence 3467777777766332 2 8998775 555655554 6667898 56666665311
Q ss_pred hhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 314 ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 314 ~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
..++..- ...--.+.+.++++++||+....
T Consensus 258 ----mvdLrKE----q~~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 258 ----MVDLRKE----QLQEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred ----heeCCHH----HHHHHHHHHHHHHHHCCCccccc
Confidence 1111000 01113467889999999987643
No 484
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=60.98 E-value=5.5 Score=27.02 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 23 VWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 23 l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+.+..+|-....+... |-.. |..|..+|.+.+++ +.+.++.-|-.|...|++...
T Consensus 6 ii~~~fG~~~~~V~~~---------Ll~~-G~ltl~~i~~~t~l---~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 6 IIEEHFGEIVAKVGEV---------LLSR-GRLTLREIVRRTGL---SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHC--SEEHHHHHHHHT-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcChHHHHHHHH---------HHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHcCCeeee
Confidence 4444555555544443 3332 78999999999999 578999999999999999865
No 485
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=60.71 E-value=1e+02 Score=29.26 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=66.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCC-CC--CC-ceEE---
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE-AI--PP-ADAV--- 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~~--~~-~D~i--- 262 (365)
-...+.+|++|+.+.....+.+.|+-++-.|++. .+.+..+.. .....+..+|+.. +. .. ++++
T Consensus 179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~ 258 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSF 258 (364)
T ss_pred cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhc
Confidence 4568999999999999999999998887777776 444444331 2234555555543 10 00 1110
Q ss_pred -----E-------e----------ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccC
Q 017835 263 -----L-------I----------KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKAD 309 (365)
Q Consensus 263 -----~-------~----------~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~ 309 (365)
. . ..+.-||.+. ..++......++| +|.+++.+.....+...
T Consensus 259 ~~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~---~~~v~~~e~~~~~p~gs 322 (364)
T KOG1269|consen 259 GFEHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKP---GGKVLILEYIRGLPEGS 322 (364)
T ss_pred cchhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCc---CceEEehhhcCcCCcCc
Confidence 0 0 1222334433 4567888888999 89999999887665543
No 486
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=60.40 E-value=13 Score=31.57 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
-++|-++||+.+|+ ....+.|.|..|...|++...
T Consensus 148 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~ 182 (202)
T PRK13918 148 IYATHDELAAAVGS---VRETVTKVIGELSREGYIRSG 182 (202)
T ss_pred ecCCHHHHHHHhCc---cHHHHHHHHHHHHHCCCEEcC
Confidence 47899999999999 578999999999999999965
No 487
>PRK09462 fur ferric uptake regulator; Provisional
Probab=60.28 E-value=7.7 Score=31.44 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=39.6
Q ss_pred HHHcCcccccccC-CCCCCHHHHHHHcCC--CCCCcchHHHHHHHHHhcCceeccc
Q 017835 39 AIQLGIPDIIHNH-AKPMTLNQLLTTLQI--HPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 39 a~~lglf~~L~~~-~~~~t~~~la~~~~~--~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
-.+.-|++.|... +.+.|+++|-+.+.- +..+..-++|.|+.|+..|++.+..
T Consensus 17 ~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3456677777643 269999999988843 1125577999999999999998864
No 488
>PRK13699 putative methylase; Provisional
Probab=60.13 E-value=40 Score=29.54 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred eEEEeCCCCC---CCCC--ceEEEec-------------cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 245 LKYVGGNMFE---AIPP--ADAVLIK-------------CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 245 i~~~~~d~~~---~~~~--~D~i~~~-------------~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
+++..+|..+ .+|. .|+|+.. ..-.....+-....+++++++||| ||.+++.-...
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKp---gg~l~if~~~~--- 75 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKK---DALMVSFYGWN--- 75 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCC---CCEEEEEeccc---
Q ss_pred ccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEE
Q 017835 307 KADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 307 ~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 352 (365)
....+..+++++||.+....
T Consensus 76 --------------------------~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 76 --------------------------RVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred --------------------------cHHHHHHHHHHCCCEEeeEE
No 489
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=60.10 E-value=44 Score=34.84 Aligned_cols=149 Identities=12% Similarity=0.096 Sum_probs=83.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------------------CCCeEEEeCCCCCC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------------------NGNLKYVGGNMFEA 255 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~~~ 255 (365)
+..+|.=||+|+=...++.+-..-+..++.+|. ++.++.+.+ ..||+... |. +.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY-AG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH-HH
Confidence 456899999998777777666666899999998 666554331 23554432 22 23
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee-cCCCccCccchhhhhhhhhhhh--------hc
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK-MESEKADYKTTETQLFMDMLMM--------VL 326 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~d~~~~--------~~ 326 (365)
..+.|+|+=. +..++.-. .++++++-+.++| +.++..... ++-..-.........+..+... ..
T Consensus 390 ~~~aDlViEa-v~E~l~~K--~~vf~~l~~~~~~----~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvE 462 (714)
T TIGR02437 390 FDNVDIVVEA-VVENPKVK--AAVLAEVEQHVRE----DAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (714)
T ss_pred hcCCCEEEEc-CcccHHHH--HHHHHHHHhhCCC----CcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEe
Confidence 4568887654 45444433 7899999999998 455544322 1111000000000011111110 00
Q ss_pred -cCcc---ccCHHHHHHHHHhcCCccceEEEcCCc
Q 017835 327 -VKGE---ERNEKEWAKLFFEAGFSDYKITDVLGV 357 (365)
Q Consensus 327 -~~~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 357 (365)
..+. ..+.+...+++++.|...+.+...+|+
T Consensus 463 vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 463 VIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 1121 124566677888889888877666665
No 490
>PTZ00357 methyltransferase; Provisional
Probab=59.65 E-value=44 Score=34.29 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=69.1
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchH------------HH------Hhhcccc--ccCCCeEEEecCCccHHHHHHH
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSS------------AL------IHKCKDV--FEGLNTLVDVGGGTGTLASAIA 219 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~------------~~------~~~~~~~--~~~~~~iLDiG~G~G~~~~~l~ 219 (365)
..|+.+.+++-.=..|.+++...-..... .+ +...+.. ......|+=+|+|-|-+....+
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 45788888887766777766543211100 00 0011100 0112468999999999877766
Q ss_pred HHCC----CCeEEEeec-hHHHHh--cc---c----------CCCeEEEeCCCCC-CCC-------------CceEEEec
Q 017835 220 KKFP----HIECTVFDQ-PHVVAD--LK---S----------NGNLKYVGGNMFE-AIP-------------PADAVLIK 265 (365)
Q Consensus 220 ~~~p----~~~~~~~D~-~~~~~~--a~---~----------~~~i~~~~~d~~~-~~~-------------~~D~i~~~ 265 (365)
+... .+++..++- |..+.. .+ . ..+|+++..|+.+ ..+ .+|++++-
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 6542 456777775 342211 11 1 2359999999988 221 37887763
Q ss_pred cccccCChhH-HHHHHHHHHHhcc
Q 017835 266 CVLHNWNDEE-CVKILKNCKKAIA 288 (365)
Q Consensus 266 ~vlh~~~~~~-~~~~L~~i~~~L~ 288 (365)
.|.-|.|.+ ..+-|.-+.+.||
T Consensus 800 -LLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 800 -LLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred -hhcccccccCCHHHHHHHHHhhh
Confidence 333343322 2334555555554
No 491
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=59.45 E-value=15 Score=25.61 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=33.6
Q ss_pred CCCCCHHHHHH---HcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 52 AKPMTLNQLLT---TLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 52 ~~~~t~~~la~---~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
++++++.+|.+ .+|+ ++..++.-|--|+..|+|+....+ ....|++|+.
T Consensus 18 g~~i~~~~Li~ll~~~Gv---~e~avR~alsRl~~~G~L~~~r~G---r~~~Y~Lt~~ 69 (70)
T PF07848_consen 18 GGWIWVASLIRLLAAFGV---SESAVRTALSRLVRRGWLESERRG---RRSYYRLTER 69 (70)
T ss_dssp TS-EEHHHHHHHHCCTT-----HHHHHHHHHHHHHTTSEEEECCC---TEEEEEE-HH
T ss_pred CCceeHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCceeeeecC---ccceEeeCCC
Confidence 46777776665 4566 678999999999999999998621 1236999864
No 492
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=59.11 E-value=11 Score=37.58 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=64.5
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeechHHHHhcccCCCeEEEeCCCCCC---C--------
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQPHVVADLKSNGNLKYVGGNMFEA---I-------- 256 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---~-------- 256 (365)
.+.+.|. .+.+...|||++|..|.++.-.++..|-- -++|+|+.++-. ..+|.....|+... +
T Consensus 34 Qln~ky~-fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp----~~~c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 34 QLNKKYK-FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP----IPNCDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred HHHHHhc-cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc----CCccchhhhhhhHHHHHHHHHHHHHh
Confidence 4556665 46788999999999999999988888743 478899744332 24444444555541 1
Q ss_pred CCceEEEe---ccccccCChhH------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 257 PPADAVLI---KCVLHNWNDEE------CVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 257 ~~~D~i~~---~~vlh~~~~~~------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
..+|+|+. .+|=..|..+. ....|+-+..-|.- ||. ++.....+.+.
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~---~g~-fvtkvfrs~dy 164 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAK---GGT-FVTKVFRSEDY 164 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHh---cCc-cccccccCCcc
Confidence 13666643 23333333221 23344455556666 666 55555544443
No 493
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=59.10 E-value=15 Score=31.64 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 35 SLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 35 ~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|+..+-.|-+ .. |..++-.+||+.+|+ +..-++.-|+.|...|+++...
T Consensus 19 ~l~~~I~~g~l---~p-G~~L~e~~La~~lgV---SRtpVReAL~~L~~eGlv~~~~ 68 (212)
T TIGR03338 19 EIERAILSGEL---PP-GAKLNESDIAARLGV---SRGPVREAFRALEEAGLVRNEK 68 (212)
T ss_pred HHHHHHHcCCC---CC-CCEecHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEec
Confidence 34444444433 33 467899999999999 5677999999999999999875
No 494
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=58.72 E-value=56 Score=33.30 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=53.5
Q ss_pred CeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccC
Q 017835 202 NTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNW 271 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~ 271 (365)
.+|+=+ |.|..+..+++.. .+..++++|. ++.++.+++ ....++.||..++ ..++|++++.- +
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~-- 473 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITC--N-- 473 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe--C--
Confidence 355545 4555555555532 3678999998 888888874 5677899999883 22588776632 1
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+++....+...+++ +.| ..+++..
T Consensus 474 d~~~n~~i~~~~r~-~~p---~~~IiaR 497 (601)
T PRK03659 474 EPEDTMKIVELCQQ-HFP---HLHILAR 497 (601)
T ss_pred CHHHHHHHHHHHHH-HCC---CCeEEEE
Confidence 23344455555444 556 4666654
No 495
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=58.54 E-value=22 Score=27.48 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=36.0
Q ss_pred ccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 47 IIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 47 ~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.|... ||.+..+|++..+++ .. .++|+ -=..|+|++.+ .|.|.+|+.++
T Consensus 67 ~L~~~-Gp~~~~~l~~~~~~~----~A-~~IL~-~N~YGWFeRv~------rGvY~LT~~G~ 115 (118)
T PF09929_consen 67 ALAEH-GPSRPADLRKATGVP----KA-TSILR-DNHYGWFERVE------RGVYALTPAGR 115 (118)
T ss_pred HHHHc-CCCCHHHHHHhcCCC----hH-HHHHH-hCcccceeeec------cceEecCcchh
Confidence 34432 899999999999983 33 33332 23579999987 69999999875
No 496
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=58.35 E-value=13 Score=28.38 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=34.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+...+|.+..+++..|+.++|+.+|+. + .++.+.|...|++.+.+
T Consensus 11 Ka~~~d~~~~~~~~~ti~~~AK~L~i~---~---~~l~~~Lr~~g~l~~~~ 55 (111)
T PF03374_consen 11 KAEFYDAFVDSDGLYTIREAAKLLGIG---R---NKLFQWLREKGWLYRRG 55 (111)
T ss_pred hhHHHHHHHcCCCCccHHHHHHHhCCC---H---HHHHHHHHhCCceEECC
Confidence 445667777656889999999999994 4 45566666799999853
No 497
>PRK11642 exoribonuclease R; Provisional
Probab=58.35 E-value=10 Score=39.89 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=36.6
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCC-CcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPT-KTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~-~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|++.|...+.|++..+|++.++++.. ....+.+.|+.|...|.+....
T Consensus 24 Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~ 72 (813)
T PRK11642 24 ILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR 72 (813)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC
Confidence 34444433479999999999999531 2356999999999999998765
No 498
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=58.34 E-value=16 Score=31.85 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=44.9
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 35 SLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 35 ~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.|+-++-.|-|. . |..++..+||+.+|+ +..-++.-|..|++.|+++... ...+..++.+.
T Consensus 24 ~Lr~~Il~g~l~---p-G~~l~e~~La~~~gv---SrtPVReAL~rL~~eGlv~~~p------~rG~~V~~~~~ 84 (230)
T COG1802 24 ELREAILSGELA---P-GERLSEEELAEELGV---SRTPVREALRRLEAEGLVEIEP------NRGAFVAPLSL 84 (230)
T ss_pred HHHHHHHhCCCC---C-CCCccHHHHHHHhCC---CCccHHHHHHHHHHCCCeEecC------CCCCeeCCCCH
Confidence 344444444442 2 479999999999999 4567999999999999999985 45555555553
No 499
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=58.20 E-value=39 Score=33.55 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=55.0
Q ss_pred CCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-----------------------
Q 017835 200 GLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE----------------------- 254 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~----------------------- 254 (365)
+..+++=+|+|.-.. +..+++.. +.+++++|. +...+.++. -..+++.-|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999998744 44455554 567999998 777777664 222232222211
Q ss_pred ---CCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 255 ---AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 255 ---~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
...++|+++..-.+.--+.+ .-+.++..+.||| |+.++
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKp---GsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKA---GSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCC---CCEEE
Confidence 12358999666544322222 2356788889999 76643
No 500
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=58.14 E-value=6.5 Score=29.16 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=31.8
Q ss_pred HHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHH
Q 017835 37 KCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILV 82 (365)
Q Consensus 37 ~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~ 82 (365)
..+.+.||+..|-. +++|-.|||+.+|+ ....+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~--~~~tQrEIa~~lGi---S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLN--GNMSQREIASKLGV---SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHhCC---ChhhhhHHHhhcc
Confidence 34568999998875 79999999999999 4566666666554
Done!