Query 017835
Match_columns 365
No_of_seqs 190 out of 2067
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 05:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 1.5E-54 5.1E-59 406.5 30.4 328 18-365 7-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 3.4E-52 1.2E-56 392.0 31.8 345 12-365 13-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 8.9E-51 3E-55 383.1 30.3 345 12-365 14-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 1.8E-50 6.3E-55 378.6 31.3 325 15-365 18-347 (348)
5 1fp2_A Isoflavone O-methyltran 100.0 4.7E-50 1.6E-54 376.4 29.0 346 7-365 4-352 (352)
6 3gwz_A MMCR; methyltransferase 100.0 1E-49 3.5E-54 376.2 30.0 323 17-365 36-368 (369)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 7.9E-50 2.7E-54 375.8 27.5 348 14-365 5-358 (358)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 3.6E-49 1.2E-53 373.1 28.1 354 3-365 6-372 (372)
9 3i53_A O-methyltransferase; CO 100.0 5E-49 1.7E-53 366.7 25.1 316 21-365 7-331 (332)
10 2ip2_A Probable phenazine-spec 100.0 6.6E-48 2.3E-52 359.4 29.9 319 18-365 7-333 (334)
11 3dp7_A SAM-dependent methyltra 100.0 4.2E-46 1.5E-50 350.7 27.5 328 12-365 8-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 3.5E-45 1.2E-49 346.2 26.9 325 16-365 13-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 1.1E-44 3.8E-49 341.0 28.3 322 19-365 19-355 (360)
14 2r3s_A Uncharacterized protein 100.0 3.5E-43 1.2E-47 327.6 28.0 315 21-364 8-333 (335)
15 1x19_A CRTF-related protein; m 100.0 1.9E-42 6.6E-47 325.6 28.9 313 13-365 24-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 3.6E-42 1.2E-46 322.9 30.6 315 15-365 20-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 1.7E-20 5.6E-25 167.8 17.6 161 198-362 68-254 (261)
18 3dtn_A Putative methyltransfer 99.8 7E-19 2.4E-23 154.7 18.6 163 198-364 42-224 (234)
19 3dh0_A SAM dependent methyltra 99.8 5.8E-18 2E-22 147.2 17.5 155 188-365 27-192 (219)
20 3hnr_A Probable methyltransfer 99.8 2.4E-18 8.2E-23 149.7 13.9 169 189-365 36-211 (220)
21 3dlc_A Putative S-adenosyl-L-m 99.8 1.5E-18 5E-23 150.6 12.1 167 189-364 35-213 (219)
22 3ou2_A SAM-dependent methyltra 99.8 3.5E-17 1.2E-21 141.9 17.7 159 189-355 36-206 (218)
23 1vl5_A Unknown conserved prote 99.8 1.4E-17 4.7E-22 148.8 15.6 158 182-354 21-190 (260)
24 1ve3_A Hypothetical protein PH 99.8 4.7E-18 1.6E-22 148.5 12.2 160 199-365 37-226 (227)
25 3bus_A REBM, methyltransferase 99.8 1.9E-17 6.5E-22 148.9 16.5 156 188-355 51-217 (273)
26 3ujc_A Phosphoethanolamine N-m 99.7 2.9E-17 1E-21 146.9 16.7 155 188-355 45-207 (266)
27 3pfg_A N-methyltransferase; N, 99.7 2.3E-17 7.9E-22 147.7 14.8 162 198-364 48-247 (263)
28 1nkv_A Hypothetical protein YJ 99.7 4.8E-17 1.6E-21 144.8 16.6 152 188-354 26-187 (256)
29 2o57_A Putative sarcosine dime 99.7 5.6E-17 1.9E-21 147.8 16.0 145 198-355 80-235 (297)
30 1xtp_A LMAJ004091AAA; SGPP, st 99.7 3.1E-17 1.1E-21 145.8 12.4 149 189-356 84-240 (254)
31 3mgg_A Methyltransferase; NYSG 99.7 5.9E-17 2E-21 146.0 14.2 152 198-354 35-198 (276)
32 3h2b_A SAM-dependent methyltra 99.7 6.7E-17 2.3E-21 138.8 13.6 144 200-361 41-190 (203)
33 3l8d_A Methyltransferase; stru 99.7 1.7E-16 5.9E-21 139.9 16.3 143 198-354 51-200 (242)
34 1kpg_A CFA synthase;, cyclopro 99.7 1.5E-16 5.3E-21 144.1 16.2 161 188-354 54-228 (287)
35 1xxl_A YCGJ protein; structura 99.7 1.2E-16 4.2E-21 140.9 14.9 151 189-354 12-174 (239)
36 3bxo_A N,N-dimethyltransferase 99.7 1.3E-16 4.5E-21 140.4 14.4 162 199-365 39-238 (239)
37 3vc1_A Geranyl diphosphate 2-C 99.7 3.5E-16 1.2E-20 143.6 17.7 154 188-355 106-270 (312)
38 3ocj_A Putative exported prote 99.7 8.2E-17 2.8E-21 147.4 13.3 164 198-364 116-302 (305)
39 2qe6_A Uncharacterized protein 99.7 2.8E-16 9.5E-21 141.4 16.5 140 200-350 77-238 (274)
40 3dli_A Methyltransferase; PSI- 99.7 2.7E-16 9.3E-21 138.7 16.0 141 198-355 39-185 (240)
41 3i9f_A Putative type 11 methyl 99.7 6.8E-17 2.3E-21 134.7 11.2 146 190-364 9-158 (170)
42 3hem_A Cyclopropane-fatty-acyl 99.7 2E-16 6.8E-21 144.6 15.3 163 188-356 62-245 (302)
43 3f4k_A Putative methyltransfer 99.7 3.8E-16 1.3E-20 139.1 16.4 143 198-355 44-197 (257)
44 3e23_A Uncharacterized protein 99.7 1.9E-16 6.6E-21 136.8 13.6 138 198-354 41-182 (211)
45 3lcc_A Putative methyl chlorid 99.7 2.3E-16 7.9E-21 138.7 14.1 133 201-356 67-209 (235)
46 4fsd_A Arsenic methyltransfera 99.7 4E-16 1.4E-20 147.3 15.9 145 198-353 81-250 (383)
47 2fk8_A Methoxy mycolic acid sy 99.7 3.4E-16 1.2E-20 144.1 14.9 161 188-354 80-254 (318)
48 3kkz_A Uncharacterized protein 99.7 3.7E-16 1.3E-20 140.2 14.7 143 198-355 44-197 (267)
49 2ex4_A Adrenal gland protein A 99.7 2.2E-16 7.6E-21 139.4 12.8 139 200-356 79-227 (241)
50 2p7i_A Hypothetical protein; p 99.7 3.9E-16 1.3E-20 138.0 14.3 149 199-354 41-199 (250)
51 1pjz_A Thiopurine S-methyltran 99.7 2.2E-16 7.6E-21 135.8 12.2 134 198-354 20-176 (203)
52 3g2m_A PCZA361.24; SAM-depende 99.7 2.6E-16 8.9E-21 143.6 13.2 169 188-364 73-290 (299)
53 3g5l_A Putative S-adenosylmeth 99.7 5.5E-16 1.9E-20 137.8 14.5 156 190-354 36-216 (253)
54 3ccf_A Cyclopropane-fatty-acyl 99.7 6.9E-16 2.4E-20 139.3 15.2 155 186-354 45-210 (279)
55 3gu3_A Methyltransferase; alph 99.7 4.1E-16 1.4E-20 141.2 13.6 152 198-354 20-190 (284)
56 3sm3_A SAM-dependent methyltra 99.7 1.3E-15 4.6E-20 133.4 15.2 149 198-354 28-207 (235)
57 2p35_A Trans-aconitate 2-methy 99.7 6.3E-16 2.2E-20 137.7 13.2 154 189-349 24-185 (259)
58 3jwg_A HEN1, methyltransferase 99.7 9.1E-16 3.1E-20 133.3 13.6 143 198-350 27-188 (219)
59 3ege_A Putative methyltransfer 99.7 1.4E-15 4.9E-20 135.9 15.2 152 188-355 24-179 (261)
60 3jwh_A HEN1; methyltransferase 99.7 7.9E-16 2.7E-20 133.6 12.4 143 198-350 27-188 (217)
61 3g07_A 7SK snRNA methylphospha 99.6 2.6E-16 9E-21 143.1 9.2 146 199-354 45-269 (292)
62 2qm3_A Predicted methyltransfe 99.6 3.8E-15 1.3E-19 140.0 17.4 215 43-303 47-280 (373)
63 3bkw_A MLL3908 protein, S-aden 99.6 3.7E-15 1.3E-19 131.4 15.9 158 189-354 34-214 (243)
64 4htf_A S-adenosylmethionine-de 99.6 8.5E-16 2.9E-20 139.1 11.9 147 200-356 68-234 (285)
65 2xvm_A Tellurite resistance pr 99.6 4.7E-15 1.6E-19 126.5 15.6 142 189-354 23-173 (199)
66 1y8c_A S-adenosylmethionine-de 99.6 2.9E-15 1E-19 132.1 14.5 150 200-354 37-225 (246)
67 3e8s_A Putative SAM dependent 99.6 1.7E-15 5.8E-20 131.9 12.3 153 189-354 43-209 (227)
68 3bkx_A SAM-dependent methyltra 99.6 3E-15 1E-19 134.7 13.8 158 189-354 34-219 (275)
69 3d2l_A SAM-dependent methyltra 99.6 5.8E-15 2E-19 130.1 14.6 95 198-298 31-135 (243)
70 3cc8_A Putative methyltransfer 99.6 8.3E-15 2.8E-19 127.8 15.0 156 187-355 22-186 (230)
71 3cgg_A SAM-dependent methyltra 99.6 4.6E-14 1.6E-18 119.6 18.8 126 198-354 44-175 (195)
72 3ggd_A SAM-dependent methyltra 99.6 3E-15 1E-19 132.4 11.1 150 198-354 54-219 (245)
73 2yqz_A Hypothetical protein TT 99.6 7.3E-15 2.5E-19 131.0 13.6 145 198-352 37-194 (263)
74 1vlm_A SAM-dependent methyltra 99.6 1.2E-14 4.1E-19 126.3 14.1 136 200-354 47-188 (219)
75 2gb4_A Thiopurine S-methyltran 99.6 1.2E-14 4.2E-19 129.0 14.2 133 199-354 67-227 (252)
76 2aot_A HMT, histamine N-methyl 99.6 1.1E-14 3.8E-19 132.3 13.8 141 199-351 51-218 (292)
77 2p8j_A S-adenosylmethionine-de 99.6 1.5E-14 5.1E-19 124.5 11.6 150 198-351 21-180 (209)
78 2zfu_A Nucleomethylin, cerebra 99.6 4.8E-14 1.6E-18 122.0 14.6 131 189-365 57-190 (215)
79 3g5t_A Trans-aconitate 3-methy 99.6 4.8E-14 1.7E-18 128.5 14.8 98 199-302 35-151 (299)
80 4hg2_A Methyltransferase type 99.6 2.3E-14 7.9E-19 127.5 12.3 98 199-304 38-139 (257)
81 2a14_A Indolethylamine N-methy 99.6 2.1E-15 7E-20 135.1 5.1 139 198-354 53-238 (263)
82 3m70_A Tellurite resistance pr 99.5 7.5E-14 2.6E-18 126.3 15.1 141 188-352 110-258 (286)
83 3thr_A Glycine N-methyltransfe 99.5 1E-14 3.5E-19 132.4 9.4 108 188-302 47-177 (293)
84 2i62_A Nicotinamide N-methyltr 99.5 1.7E-14 5.7E-19 128.8 10.6 140 199-355 55-240 (265)
85 3grz_A L11 mtase, ribosomal pr 99.5 5.5E-14 1.9E-18 120.8 13.0 131 198-365 58-196 (205)
86 1ri5_A MRNA capping enzyme; me 99.5 3.6E-14 1.2E-18 128.9 11.1 154 198-355 62-251 (298)
87 4e2x_A TCAB9; kijanose, tetron 99.5 5.1E-14 1.7E-18 134.4 12.3 149 188-355 97-254 (416)
88 3giw_A Protein of unknown func 99.5 1E-13 3.4E-18 122.9 12.3 142 199-350 77-243 (277)
89 1wzn_A SAM-dependent methyltra 99.5 4.8E-13 1.6E-17 118.6 16.7 97 198-299 39-144 (252)
90 2gs9_A Hypothetical protein TT 99.5 1.4E-13 4.9E-18 118.6 12.5 135 200-353 36-177 (211)
91 2kw5_A SLR1183 protein; struct 99.5 3.8E-13 1.3E-17 115.1 14.0 134 199-354 29-171 (202)
92 1fbn_A MJ fibrillarin homologu 99.5 6.6E-13 2.3E-17 116.2 15.9 140 198-364 72-226 (230)
93 3e05_A Precorrin-6Y C5,15-meth 99.5 7E-13 2.4E-17 113.7 15.5 120 189-346 31-160 (204)
94 3ofk_A Nodulation protein S; N 99.5 5.9E-14 2E-18 121.5 8.8 99 198-301 49-155 (216)
95 3q87_B N6 adenine specific DNA 99.5 5.7E-13 1.9E-17 111.1 14.4 119 199-355 22-150 (170)
96 2g72_A Phenylethanolamine N-me 99.5 4.8E-14 1.6E-18 127.8 8.6 139 200-355 71-257 (289)
97 2b3t_A Protein methyltransfera 99.5 1.3E-12 4.3E-17 117.7 16.8 134 199-364 108-274 (276)
98 3mq2_A 16S rRNA methyltransfer 99.5 1.7E-13 5.8E-18 118.8 10.7 149 190-355 19-185 (218)
99 3orh_A Guanidinoacetate N-meth 99.5 4.1E-14 1.4E-18 124.5 5.7 135 198-352 58-208 (236)
100 3p2e_A 16S rRNA methylase; met 99.4 3.2E-13 1.1E-17 117.8 10.1 146 199-355 23-186 (225)
101 1dus_A MJ0882; hypothetical pr 99.4 3.2E-12 1.1E-16 108.1 15.5 141 188-365 42-193 (194)
102 4df3_A Fibrillarin-like rRNA/T 99.4 2.4E-12 8.3E-17 111.9 14.8 141 198-364 75-230 (233)
103 1af7_A Chemotaxis receptor met 99.4 1.6E-12 5.5E-17 116.3 13.2 96 200-298 105-250 (274)
104 2vdw_A Vaccinia virus capping 99.4 1.7E-12 5.9E-17 118.2 13.2 151 200-354 48-246 (302)
105 3uwp_A Histone-lysine N-methyl 99.4 8.2E-13 2.8E-17 122.8 10.9 112 188-307 163-295 (438)
106 3htx_A HEN1; HEN1, small RNA m 99.4 2.3E-12 7.9E-17 128.5 14.0 101 198-302 719-836 (950)
107 3iv6_A Putative Zn-dependent a 99.4 1.8E-12 6.3E-17 114.9 11.9 107 187-301 34-149 (261)
108 1nt2_A Fibrillarin-like PRE-rR 99.4 7.6E-12 2.6E-16 107.9 15.4 137 198-365 55-209 (210)
109 1zx0_A Guanidinoacetate N-meth 99.4 4.4E-13 1.5E-17 117.8 7.6 100 199-302 59-172 (236)
110 3evz_A Methyltransferase; NYSG 99.4 5.3E-12 1.8E-16 110.2 14.3 136 198-364 53-218 (230)
111 4dzr_A Protein-(glutamine-N5) 99.4 3.2E-13 1.1E-17 116.3 5.5 134 199-363 29-202 (215)
112 2pxx_A Uncharacterized protein 99.4 2.5E-12 8.5E-17 110.8 11.0 102 198-303 40-162 (215)
113 3hm2_A Precorrin-6Y C5,15-meth 99.4 1.9E-12 6.7E-17 108.1 9.8 100 190-301 17-128 (178)
114 2ipx_A RRNA 2'-O-methyltransfe 99.4 5.3E-12 1.8E-16 110.6 12.3 140 198-363 75-229 (233)
115 3mb5_A SAM-dependent methyltra 99.3 7.9E-12 2.7E-16 110.9 13.2 126 189-354 84-222 (255)
116 2h00_A Methyltransferase 10 do 99.3 4.9E-13 1.7E-17 118.8 5.1 144 200-354 65-238 (254)
117 2nxc_A L11 mtase, ribosomal pr 99.3 8.8E-12 3E-16 110.7 12.8 126 198-361 118-251 (254)
118 3kr9_A SAM-dependent methyltra 99.3 1E-11 3.5E-16 107.3 12.8 130 198-364 13-156 (225)
119 3fpf_A Mtnas, putative unchara 99.3 6.3E-12 2.1E-16 112.7 11.7 96 198-301 120-223 (298)
120 1yb2_A Hypothetical protein TA 99.3 3.8E-12 1.3E-16 114.5 10.4 125 189-353 101-236 (275)
121 1g8a_A Fibrillarin-like PRE-rR 99.3 3E-11 1E-15 105.3 15.6 140 198-364 71-225 (227)
122 1xdz_A Methyltransferase GIDB; 99.3 4.6E-12 1.6E-16 111.5 10.4 120 199-353 69-201 (240)
123 3mti_A RRNA methylase; SAM-dep 99.3 9.5E-12 3.2E-16 104.8 12.0 133 198-355 20-170 (185)
124 3njr_A Precorrin-6Y methylase; 99.3 1.9E-11 6.5E-16 104.9 13.7 121 190-352 47-178 (204)
125 3bgv_A MRNA CAP guanine-N7 met 99.3 6.9E-12 2.4E-16 114.9 11.2 100 199-302 33-157 (313)
126 1jsx_A Glucose-inhibited divis 99.3 6.5E-12 2.2E-16 107.8 10.3 91 200-299 65-164 (207)
127 3m33_A Uncharacterized protein 99.3 2.6E-12 8.9E-17 112.1 7.7 114 199-354 47-167 (226)
128 3id6_C Fibrillarin-like rRNA/T 99.3 5.8E-11 2E-15 103.4 16.1 141 198-364 74-229 (232)
129 4dcm_A Ribosomal RNA large sub 99.3 1.1E-11 3.6E-16 116.3 12.2 107 189-300 213-334 (375)
130 1yzh_A TRNA (guanine-N(7)-)-me 99.3 1.7E-11 5.9E-16 105.9 12.7 99 199-300 40-156 (214)
131 1l3i_A Precorrin-6Y methyltran 99.3 2E-11 6.7E-16 103.0 12.8 119 190-348 25-154 (192)
132 3g89_A Ribosomal RNA small sub 99.3 4.8E-12 1.6E-16 112.0 9.3 121 199-354 79-212 (249)
133 3bwc_A Spermidine synthase; SA 99.3 1.7E-11 5.7E-16 111.8 13.0 129 199-354 94-240 (304)
134 3lec_A NADB-rossmann superfami 99.3 2.2E-11 7.6E-16 105.4 13.1 131 198-365 19-163 (230)
135 3eey_A Putative rRNA methylase 99.3 1.1E-11 3.9E-16 105.4 10.4 103 198-303 20-142 (197)
136 2pjd_A Ribosomal RNA small sub 99.3 7E-12 2.4E-16 116.4 9.5 109 188-301 186-304 (343)
137 3lpm_A Putative methyltransfer 99.3 4.8E-11 1.6E-15 106.3 14.3 124 198-354 46-201 (259)
138 2ld4_A Anamorsin; methyltransf 99.3 1.3E-11 4.4E-16 103.2 9.5 114 198-353 10-133 (176)
139 3fzg_A 16S rRNA methylase; met 99.3 2.4E-11 8.1E-16 101.2 10.5 96 198-300 47-152 (200)
140 3gnl_A Uncharacterized protein 99.3 4.3E-11 1.5E-15 104.5 12.6 130 198-364 19-162 (244)
141 2pwy_A TRNA (adenine-N(1)-)-me 99.3 3.8E-11 1.3E-15 106.6 12.3 125 189-353 87-223 (258)
142 2frn_A Hypothetical protein PH 99.2 8.7E-11 3E-15 105.7 14.2 121 198-350 123-253 (278)
143 2avn_A Ubiquinone/menaquinone 99.2 1.9E-11 6.6E-16 108.8 9.9 98 199-302 53-154 (260)
144 2y1w_A Histone-arginine methyl 99.2 2.7E-11 9.1E-16 112.6 10.3 105 189-299 41-154 (348)
145 3dxy_A TRNA (guanine-N(7)-)-me 99.2 2.1E-11 7.1E-16 105.7 8.7 98 199-300 33-150 (218)
146 2fca_A TRNA (guanine-N(7)-)-me 99.2 4.9E-11 1.7E-15 103.0 10.9 98 199-300 37-153 (213)
147 2yxd_A Probable cobalt-precorr 99.2 6.9E-11 2.4E-15 98.8 11.6 119 190-351 27-154 (183)
148 1u2z_A Histone-lysine N-methyl 99.2 6.1E-11 2.1E-15 112.3 11.9 110 189-306 233-365 (433)
149 2yxe_A Protein-L-isoaspartate 99.2 6.7E-11 2.3E-15 102.0 11.0 99 190-301 69-178 (215)
150 3b3j_A Histone-arginine methyl 99.2 3.7E-11 1.3E-15 116.1 10.2 105 188-298 148-261 (480)
151 1o54_A SAM-dependent O-methylt 99.2 5.2E-11 1.8E-15 107.1 10.6 101 189-301 103-214 (277)
152 3lbf_A Protein-L-isoaspartate 99.2 8.3E-11 2.8E-15 101.1 11.4 98 190-302 69-176 (210)
153 3lcv_B Sisomicin-gentamicin re 99.2 6.3E-11 2.1E-15 103.2 10.5 133 199-353 131-271 (281)
154 3hp7_A Hemolysin, putative; st 99.2 6.9E-11 2.4E-15 106.1 11.0 148 189-354 75-232 (291)
155 3u81_A Catechol O-methyltransf 99.2 3.5E-11 1.2E-15 104.5 7.6 99 198-302 56-172 (221)
156 3p9n_A Possible methyltransfer 99.2 1.7E-10 5.7E-15 97.6 11.6 100 199-303 43-156 (189)
157 3duw_A OMT, O-methyltransferas 99.2 2.4E-10 8.2E-15 99.2 12.9 99 198-304 56-171 (223)
158 1o9g_A RRNA methyltransferase; 99.2 7.3E-11 2.5E-15 104.4 9.7 101 199-302 50-216 (250)
159 3q7e_A Protein arginine N-meth 99.2 1.7E-10 5.7E-15 107.3 12.2 96 198-297 64-170 (349)
160 1vbf_A 231AA long hypothetical 99.2 1.6E-10 5.6E-15 100.7 11.4 99 189-302 61-167 (231)
161 2ozv_A Hypothetical protein AT 99.2 1.2E-10 4.1E-15 103.8 10.5 99 198-299 34-169 (260)
162 3ntv_A MW1564 protein; rossman 99.2 7.4E-11 2.5E-15 103.2 9.0 98 198-303 69-179 (232)
163 3tfw_A Putative O-methyltransf 99.2 5.8E-11 2E-15 105.0 8.2 99 198-304 61-174 (248)
164 3ckk_A TRNA (guanine-N(7)-)-me 99.2 1.6E-10 5.5E-15 101.3 10.8 99 199-300 45-168 (235)
165 2plw_A Ribosomal RNA methyltra 99.2 3.2E-10 1.1E-14 96.6 12.3 103 190-300 13-154 (201)
166 1ej0_A FTSJ; methyltransferase 99.1 2E-10 6.9E-15 95.3 10.8 97 198-301 20-137 (180)
167 1nv8_A HEMK protein; class I a 99.1 1.6E-10 5.6E-15 104.2 10.6 95 199-298 122-247 (284)
168 1jg1_A PIMT;, protein-L-isoasp 99.1 1.5E-10 5.3E-15 101.4 10.1 100 188-301 81-190 (235)
169 3dmg_A Probable ribosomal RNA 99.1 2.3E-10 7.8E-15 107.3 11.7 96 200-300 233-340 (381)
170 3bzb_A Uncharacterized protein 99.1 3.9E-10 1.3E-14 101.6 12.6 98 198-299 77-204 (281)
171 2gpy_A O-methyltransferase; st 99.1 1.9E-10 6.3E-15 100.7 10.2 98 198-303 52-163 (233)
172 2bm8_A Cephalosporin hydroxyla 99.1 1.7E-10 5.9E-15 101.2 9.9 94 200-301 81-188 (236)
173 3r3h_A O-methyltransferase, SA 99.1 2.5E-10 8.4E-15 100.6 10.8 100 198-305 58-175 (242)
174 1dl5_A Protein-L-isoaspartate 99.1 2.8E-10 9.6E-15 104.4 11.2 100 189-301 66-176 (317)
175 3gjy_A Spermidine synthase; AP 99.1 1.8E-10 6.2E-15 104.5 9.7 97 202-301 91-201 (317)
176 3tr6_A O-methyltransferase; ce 99.1 1.3E-10 4.3E-15 101.1 8.3 99 198-304 62-178 (225)
177 1p91_A Ribosomal RNA large sub 99.1 2.9E-10 9.8E-15 101.6 10.6 93 199-303 84-181 (269)
178 2fyt_A Protein arginine N-meth 99.1 4.4E-10 1.5E-14 104.0 12.2 96 198-297 62-168 (340)
179 3r0q_C Probable protein argini 99.1 2E-10 6.8E-15 107.9 9.6 101 198-302 61-171 (376)
180 3sso_A Methyltransferase; macr 99.1 1.3E-10 4.6E-15 107.8 8.2 95 199-302 215-326 (419)
181 3opn_A Putative hemolysin; str 99.1 1.4E-10 4.9E-15 101.3 7.7 149 189-355 27-185 (232)
182 2b25_A Hypothetical protein; s 99.1 1.5E-10 5.2E-15 107.0 8.2 101 190-302 97-221 (336)
183 1g6q_1 HnRNP arginine N-methyl 99.1 7.8E-10 2.7E-14 101.9 12.7 96 198-297 36-142 (328)
184 2vdv_E TRNA (guanine-N(7)-)-me 99.1 1.8E-10 6.3E-15 101.6 7.9 94 198-299 47-172 (246)
185 3adn_A Spermidine synthase; am 99.1 3.7E-10 1.3E-14 102.2 9.8 99 199-300 82-198 (294)
186 1ixk_A Methyltransferase; open 99.1 1.1E-09 3.9E-14 100.1 13.1 103 198-303 116-249 (315)
187 1ws6_A Methyltransferase; stru 99.1 2.1E-10 7.1E-15 94.9 7.3 94 200-302 41-149 (171)
188 2esr_A Methyltransferase; stru 99.1 2.4E-10 8.1E-15 95.4 7.6 97 199-302 30-140 (177)
189 2hnk_A SAM-dependent O-methylt 99.1 1.3E-09 4.5E-14 95.6 12.5 98 198-303 58-184 (239)
190 3dr5_A Putative O-methyltransf 99.1 4.5E-10 1.5E-14 97.5 9.2 95 201-303 57-166 (221)
191 3c3p_A Methyltransferase; NP_9 99.0 3E-10 1E-14 97.7 7.5 97 199-303 55-163 (210)
192 3tma_A Methyltransferase; thum 99.0 1.8E-09 6.2E-14 100.5 13.2 108 189-301 194-318 (354)
193 2fhp_A Methylase, putative; al 99.0 5.6E-10 1.9E-14 93.8 8.8 97 199-302 43-156 (187)
194 3frh_A 16S rRNA methylase; met 99.0 8.7E-10 3E-14 95.1 9.9 95 199-301 104-206 (253)
195 2avd_A Catechol-O-methyltransf 99.0 4.8E-10 1.7E-14 97.6 7.9 98 198-303 67-182 (229)
196 2ift_A Putative methylase HI07 99.0 4.4E-10 1.5E-14 96.0 7.5 97 200-303 53-166 (201)
197 3dou_A Ribosomal RNA large sub 99.0 4.3E-10 1.5E-14 95.3 7.3 103 189-301 15-140 (191)
198 2pbf_A Protein-L-isoaspartate 99.0 2.1E-09 7.3E-14 93.4 11.9 93 198-301 78-194 (227)
199 1r18_A Protein-L-isoaspartate( 99.0 7E-10 2.4E-14 96.6 8.8 92 198-300 82-194 (227)
200 2nyu_A Putative ribosomal RNA 99.0 9E-10 3.1E-14 93.4 9.1 97 198-301 20-146 (196)
201 1i9g_A Hypothetical protein RV 99.0 1.5E-09 5.1E-14 97.5 10.9 101 189-301 90-204 (280)
202 4azs_A Methyltransferase WBDD; 99.0 3.1E-10 1.1E-14 112.3 6.9 100 199-303 65-176 (569)
203 3gdh_A Trimethylguanosine synt 99.0 2.3E-11 8E-16 106.9 -1.0 136 199-357 77-222 (241)
204 1sui_A Caffeoyl-COA O-methyltr 99.0 6.2E-10 2.1E-14 98.3 7.8 98 198-303 77-193 (247)
205 3a27_A TYW2, uncharacterized p 99.0 1.9E-09 6.5E-14 96.6 10.7 98 198-304 117-223 (272)
206 2yvl_A TRMI protein, hypotheti 99.0 3.5E-09 1.2E-13 93.1 12.3 99 190-302 83-192 (248)
207 2oxt_A Nucleoside-2'-O-methylt 99.0 9.9E-10 3.4E-14 97.8 8.6 97 198-301 72-186 (265)
208 1i1n_A Protein-L-isoaspartate 99.0 2.8E-09 9.6E-14 92.6 11.1 93 198-301 75-183 (226)
209 2wa2_A Non-structural protein 99.0 9.5E-10 3.2E-14 98.5 7.9 97 198-301 80-194 (276)
210 1zq9_A Probable dimethyladenos 99.0 8.6E-10 2.9E-14 99.5 7.3 102 188-297 18-144 (285)
211 2i7c_A Spermidine synthase; tr 99.0 1.3E-09 4.5E-14 98.1 8.5 98 199-299 77-191 (283)
212 3cbg_A O-methyltransferase; cy 99.0 8.6E-10 3E-14 96.4 7.0 99 198-304 70-186 (232)
213 3c3y_A Pfomt, O-methyltransfer 99.0 1.6E-09 5.4E-14 95.1 8.7 97 198-302 68-183 (237)
214 4hc4_A Protein arginine N-meth 99.0 4.2E-09 1.4E-13 98.1 12.0 96 199-298 82-187 (376)
215 1uir_A Polyamine aminopropyltr 98.9 1.6E-09 5.6E-14 99.0 8.7 99 199-300 76-195 (314)
216 1iy9_A Spermidine synthase; ro 98.9 1.4E-09 4.9E-14 97.5 8.1 98 199-299 74-188 (275)
217 2fpo_A Methylase YHHF; structu 98.9 2.7E-09 9.3E-14 91.2 9.4 96 200-302 54-162 (202)
218 2yxl_A PH0851 protein, 450AA l 98.9 1.1E-08 3.8E-13 98.2 14.3 104 198-304 257-393 (450)
219 2b2c_A Spermidine synthase; be 98.9 1.5E-09 5.1E-14 99.1 7.8 98 199-300 107-222 (314)
220 1xj5_A Spermidine synthase 1; 98.9 1.8E-09 6E-14 99.4 8.3 98 199-299 119-234 (334)
221 1mjf_A Spermidine synthase; sp 98.9 1.7E-09 5.9E-14 97.3 7.9 97 199-299 74-192 (281)
222 2o07_A Spermidine synthase; st 98.9 1.7E-09 5.7E-14 98.4 7.8 99 199-300 94-209 (304)
223 2pt6_A Spermidine synthase; tr 98.9 2E-09 6.7E-14 98.7 8.3 97 199-299 115-229 (321)
224 2p41_A Type II methyltransfera 98.9 1.8E-09 6.1E-14 98.2 7.5 95 198-298 80-189 (305)
225 1ne2_A Hypothetical protein TA 98.9 5.3E-09 1.8E-13 89.0 9.9 88 199-287 50-139 (200)
226 3ajd_A Putative methyltransfer 98.9 5.7E-09 2E-13 93.5 10.0 103 198-303 81-214 (274)
227 1wy7_A Hypothetical protein PH 98.9 2.3E-08 7.9E-13 85.4 12.4 88 199-287 48-141 (207)
228 1inl_A Spermidine synthase; be 98.9 3.9E-09 1.4E-13 95.6 7.9 98 199-299 89-204 (296)
229 2cmg_A Spermidine synthase; tr 98.9 6.3E-09 2.1E-13 92.5 8.9 89 199-299 71-170 (262)
230 3tm4_A TRNA (guanine N2-)-meth 98.8 2.9E-08 9.9E-13 93.0 12.6 120 199-354 216-352 (373)
231 3k6r_A Putative transferase PH 98.8 2.3E-08 7.7E-13 89.3 10.8 120 198-349 123-252 (278)
232 2h1r_A Dimethyladenosine trans 98.8 1.2E-08 4E-13 92.7 8.2 97 188-289 32-151 (299)
233 2f8l_A Hypothetical protein LM 98.8 1.6E-08 5.6E-13 93.6 9.2 100 199-301 129-257 (344)
234 3m6w_A RRNA methylase; rRNA me 98.8 4.1E-08 1.4E-12 93.8 11.3 102 198-303 99-232 (464)
235 2xyq_A Putative 2'-O-methyl tr 98.7 3E-08 1E-12 89.0 9.2 116 198-352 61-195 (290)
236 2ih2_A Modification methylase 98.7 3.7E-08 1.3E-12 93.7 10.4 97 199-301 38-165 (421)
237 1qam_A ERMC' methyltransferase 98.7 3E-08 1E-12 87.3 8.8 89 188-280 20-115 (244)
238 1sqg_A SUN protein, FMU protei 98.7 4.1E-08 1.4E-12 93.7 10.3 104 198-304 244-378 (429)
239 2igt_A SAM dependent methyltra 98.7 4.8E-08 1.6E-12 89.8 10.0 97 200-301 153-273 (332)
240 2frx_A Hypothetical protein YE 98.7 2.2E-07 7.5E-12 89.5 13.4 101 200-303 117-249 (479)
241 3m4x_A NOL1/NOP2/SUN family pr 98.6 1.2E-07 4E-12 90.6 10.6 103 198-303 103-237 (456)
242 1yub_A Ermam, rRNA methyltrans 98.6 1.2E-08 4.2E-13 89.8 3.6 104 188-300 19-145 (245)
243 3gru_A Dimethyladenosine trans 98.6 1.6E-07 5.4E-12 84.7 9.6 88 188-280 40-135 (295)
244 2yx1_A Hypothetical protein MJ 98.6 1.4E-07 4.8E-12 87.0 9.2 93 199-303 194-294 (336)
245 2b78_A Hypothetical protein SM 98.6 3E-08 1E-12 93.2 4.8 98 199-300 211-331 (385)
246 3c0k_A UPF0064 protein YCCW; P 98.6 1.3E-07 4.6E-12 89.2 9.1 98 199-300 219-339 (396)
247 2as0_A Hypothetical protein PH 98.5 1.6E-07 5.5E-12 88.7 8.4 99 199-301 216-336 (396)
248 1wxx_A TT1595, hypothetical pr 98.5 1.9E-07 6.4E-12 87.7 8.6 97 200-301 209-326 (382)
249 3b5i_A S-adenosyl-L-methionine 98.5 1.6E-06 5.3E-11 80.6 13.5 151 201-354 53-298 (374)
250 1uwv_A 23S rRNA (uracil-5-)-me 98.5 1.1E-06 3.6E-11 83.9 12.7 90 198-298 284-387 (433)
251 4dmg_A Putative uncharacterize 98.5 5.2E-07 1.8E-11 84.7 10.3 99 199-302 213-328 (393)
252 3k0b_A Predicted N6-adenine-sp 98.5 5.9E-07 2E-11 84.4 10.6 111 188-301 191-351 (393)
253 3fut_A Dimethyladenosine trans 98.5 6.1E-07 2.1E-11 79.9 9.4 89 188-282 37-133 (271)
254 2okc_A Type I restriction enzy 98.5 2.8E-07 9.5E-12 88.3 7.8 101 198-301 169-308 (445)
255 3ldg_A Putative uncharacterize 98.4 1.8E-06 6E-11 80.8 12.6 111 188-301 184-344 (384)
256 3ftd_A Dimethyladenosine trans 98.4 5.8E-07 2E-11 79.1 8.2 90 188-280 21-116 (249)
257 3ldu_A Putative methylase; str 98.4 1.1E-06 3.6E-11 82.5 10.3 111 188-301 185-345 (385)
258 2qfm_A Spermine synthase; sper 98.4 7.8E-07 2.7E-11 81.7 8.6 97 199-299 187-313 (364)
259 1m6y_A S-adenosyl-methyltransf 98.4 6.3E-07 2.2E-11 81.0 7.6 77 188-266 16-106 (301)
260 1rjd_A PPM1P, carboxy methyl t 98.4 8.4E-06 2.9E-10 74.7 14.9 143 199-347 96-281 (334)
261 3uzu_A Ribosomal RNA small sub 98.3 2.9E-07 1E-11 82.3 4.5 85 188-274 32-129 (279)
262 3v97_A Ribosomal RNA large sub 98.3 1.1E-06 3.9E-11 88.6 9.2 98 199-300 538-657 (703)
263 3tqs_A Ribosomal RNA small sub 98.3 7.5E-07 2.6E-11 78.6 6.8 87 188-280 19-117 (255)
264 4gqb_A Protein arginine N-meth 98.3 2.6E-06 8.9E-11 84.0 11.0 128 160-297 322-464 (637)
265 2efj_A 3,7-dimethylxanthine me 98.3 7E-06 2.4E-10 76.3 13.1 150 201-353 53-291 (384)
266 3o4f_A Spermidine synthase; am 98.3 2.7E-06 9.1E-11 76.0 9.7 98 199-300 82-198 (294)
267 2jjq_A Uncharacterized RNA met 98.3 5.6E-06 1.9E-10 78.5 12.1 91 198-299 288-386 (425)
268 1qyr_A KSGA, high level kasuga 98.3 7.5E-07 2.6E-11 78.5 5.6 89 188-280 11-111 (252)
269 2k4m_A TR8_protein, UPF0146 pr 98.3 2.5E-06 8.6E-11 67.2 7.7 84 198-301 33-122 (153)
270 3evf_A RNA-directed RNA polyme 98.2 3.8E-06 1.3E-10 73.6 7.6 105 189-298 65-182 (277)
271 2qy6_A UPF0209 protein YFCK; s 98.1 3.2E-06 1.1E-10 74.6 6.2 128 200-362 60-243 (257)
272 3ua3_A Protein arginine N-meth 98.1 4.4E-06 1.5E-10 82.4 7.7 127 160-297 377-531 (745)
273 2r6z_A UPF0341 protein in RSP 98.1 6.1E-06 2.1E-10 72.9 7.8 71 198-270 81-173 (258)
274 1m6e_X S-adenosyl-L-methionnin 98.1 1.9E-05 6.4E-10 72.8 11.3 151 199-352 50-278 (359)
275 3bt7_A TRNA (uracil-5-)-methyl 98.0 3.3E-06 1.1E-10 78.8 4.9 88 201-301 214-327 (369)
276 2b9e_A NOL1/NOP2/SUN domain fa 98.0 3.6E-05 1.2E-09 69.8 11.0 67 198-264 100-180 (309)
277 2dul_A N(2),N(2)-dimethylguano 98.0 1.3E-05 4.3E-10 74.9 8.1 92 200-300 47-164 (378)
278 2ar0_A M.ecoki, type I restric 98.0 1.6E-05 5.4E-10 77.8 9.0 101 198-301 167-313 (541)
279 3v97_A Ribosomal RNA large sub 98.0 2.7E-05 9.4E-10 78.5 10.8 109 188-301 180-348 (703)
280 3gcz_A Polyprotein; flavivirus 98.0 6.3E-06 2.2E-10 72.4 5.1 106 188-298 80-199 (282)
281 3iei_A Leucine carboxyl methyl 97.9 0.00036 1.2E-08 63.7 16.4 146 200-354 90-281 (334)
282 4auk_A Ribosomal RNA large sub 97.9 7E-05 2.4E-09 68.7 11.4 69 198-268 209-280 (375)
283 3axs_A Probable N(2),N(2)-dime 97.9 1E-05 3.4E-10 75.7 5.9 93 199-300 51-158 (392)
284 2oyr_A UPF0341 protein YHIQ; a 97.8 2.7E-05 9.3E-10 68.6 5.8 71 198-270 84-176 (258)
285 3c6k_A Spermine synthase; sper 97.6 0.00014 4.9E-09 67.0 8.5 97 199-299 204-330 (381)
286 2uyo_A Hypothetical protein ML 97.6 0.0004 1.4E-08 62.8 11.1 144 199-349 101-274 (310)
287 3s1s_A Restriction endonucleas 97.6 0.00028 9.6E-09 70.9 10.5 100 199-301 320-466 (878)
288 3eld_A Methyltransferase; flav 97.6 0.00015 5.2E-09 64.1 7.5 106 189-299 72-190 (300)
289 1wg8_A Predicted S-adenosylmet 97.6 0.00022 7.7E-09 62.8 8.4 75 187-265 11-96 (285)
290 3ll7_A Putative methyltransfer 97.6 6E-05 2E-09 70.7 5.0 65 199-265 92-170 (410)
291 3cvo_A Methyltransferase-like 97.5 0.00045 1.5E-08 58.2 9.9 92 198-303 28-156 (202)
292 3khk_A Type I restriction-modi 97.5 0.00012 4E-09 71.6 6.7 97 202-301 246-396 (544)
293 3p8z_A Mtase, non-structural p 97.4 0.00033 1.1E-08 59.6 6.7 105 188-298 68-184 (267)
294 3lkd_A Type I restriction-modi 97.3 0.00064 2.2E-08 66.3 9.5 99 200-301 221-359 (542)
295 2px2_A Genome polyprotein [con 97.3 0.00034 1.2E-08 60.4 6.1 105 188-298 63-181 (269)
296 2vz8_A Fatty acid synthase; tr 97.2 6.9E-05 2.4E-09 85.3 1.2 143 199-353 1239-1394(2512)
297 3lkz_A Non-structural protein 97.1 0.0015 5E-08 57.6 8.1 105 188-298 84-202 (321)
298 2heo_A Z-DNA binding protein 1 97.0 0.00021 7.1E-09 48.9 1.5 55 41-104 12-66 (67)
299 2wk1_A NOVP; transferase, O-me 96.8 0.0056 1.9E-07 54.3 9.1 95 199-301 105-244 (282)
300 3b73_A PHIH1 repressor-like pr 96.7 0.00053 1.8E-08 51.8 1.9 62 41-112 15-78 (111)
301 3tka_A Ribosomal RNA small sub 96.6 0.0048 1.6E-07 55.7 7.4 67 186-254 45-115 (347)
302 1y0u_A Arsenical resistance op 96.6 0.0012 4.1E-08 48.5 2.9 62 34-108 26-87 (96)
303 2zwa_A Leucine carboxyl methyl 96.5 0.028 9.7E-07 56.6 13.5 148 200-354 107-309 (695)
304 1xmk_A Double-stranded RNA-spe 96.4 0.0013 4.4E-08 46.3 2.2 60 41-108 13-73 (79)
305 3mq0_A Transcriptional repress 96.2 0.0017 5.8E-08 57.7 2.2 57 42-107 33-89 (275)
306 3jth_A Transcription activator 96.2 0.0023 7.7E-08 47.1 2.5 66 34-107 18-83 (98)
307 3pqk_A Biofilm growth-associat 96.2 0.0031 1.1E-07 46.7 3.3 59 40-106 24-82 (102)
308 3vyw_A MNMC2; tRNA wobble urid 96.2 0.015 5.1E-07 52.0 8.1 130 199-363 95-257 (308)
309 3r24_A NSP16, 2'-O-methyl tran 96.1 0.012 4.3E-07 51.7 7.0 92 198-299 107-216 (344)
310 2hzt_A Putative HTH-type trans 96.1 0.019 6.4E-07 42.9 7.2 78 20-111 4-82 (107)
311 3r4k_A Transcriptional regulat 96.1 0.0025 8.6E-08 56.1 2.6 59 42-108 9-67 (260)
312 1i4w_A Mitochondrial replicati 96.0 0.012 4.2E-07 53.9 7.1 84 200-283 58-166 (353)
313 3ech_A MEXR, multidrug resista 96.0 0.011 3.7E-07 46.5 5.8 69 39-111 37-105 (142)
314 4fzv_A Putative methyltransfer 96.0 0.04 1.4E-06 50.6 10.3 105 198-305 146-289 (359)
315 4a5n_A Uncharacterized HTH-typ 95.9 0.022 7.5E-07 44.3 7.2 80 18-111 14-94 (131)
316 3f6o_A Probable transcriptiona 95.8 0.0028 9.7E-08 48.4 1.7 67 34-108 13-79 (118)
317 2oqg_A Possible transcriptiona 95.8 0.0029 1E-07 47.8 1.7 61 40-108 22-82 (114)
318 1u2w_A CADC repressor, cadmium 95.8 0.0048 1.6E-07 47.5 2.8 68 33-107 36-103 (122)
319 3cuo_A Uncharacterized HTH-typ 95.8 0.0042 1.4E-07 45.5 2.3 63 38-107 23-85 (99)
320 1oyi_A Double-stranded RNA-bin 95.7 0.0064 2.2E-07 42.8 2.9 59 40-107 18-76 (82)
321 2o0y_A Transcriptional regulat 95.7 0.0069 2.3E-07 53.3 3.6 57 42-107 26-82 (260)
322 2kko_A Possible transcriptiona 95.6 0.0025 8.6E-08 47.9 0.7 76 15-107 10-85 (108)
323 3f6v_A Possible transcriptiona 95.6 0.0043 1.5E-07 49.7 1.9 69 32-108 51-119 (151)
324 1qgp_A Protein (double strande 95.6 0.0055 1.9E-07 42.9 2.2 58 41-105 16-75 (77)
325 2xrn_A HTH-type transcriptiona 95.6 0.0052 1.8E-07 53.4 2.5 59 43-109 10-68 (241)
326 1r1u_A CZRA, repressor protein 95.6 0.0046 1.6E-07 46.3 1.8 76 14-106 10-85 (106)
327 3bdd_A Regulatory protein MARR 95.6 0.019 6.5E-07 44.8 5.6 67 41-111 33-99 (142)
328 2zig_A TTHA0409, putative modi 95.5 0.014 4.9E-07 52.2 5.4 41 199-241 234-275 (297)
329 2nyx_A Probable transcriptiona 95.5 0.027 9.2E-07 45.6 6.6 67 41-111 47-113 (168)
330 1mkm_A ICLR transcriptional re 95.5 0.0065 2.2E-07 53.0 2.9 56 43-107 12-67 (249)
331 2g7u_A Transcriptional regulat 95.5 0.0094 3.2E-07 52.3 4.0 60 42-111 17-76 (257)
332 1qbj_A Protein (double-strande 95.5 0.0075 2.6E-07 42.6 2.6 61 41-108 12-74 (81)
333 3ufb_A Type I restriction-modi 95.5 0.082 2.8E-06 51.3 10.9 101 198-301 215-363 (530)
334 2jsc_A Transcriptional regulat 95.4 0.0047 1.6E-07 47.2 1.6 59 40-106 22-80 (118)
335 2fu4_A Ferric uptake regulatio 95.3 0.0082 2.8E-07 42.5 2.4 48 41-91 19-72 (83)
336 1ub9_A Hypothetical protein PH 95.2 0.0054 1.8E-07 45.0 1.3 71 34-108 11-81 (100)
337 2ia2_A Putative transcriptiona 95.2 0.0098 3.4E-07 52.4 3.2 56 42-107 24-79 (265)
338 1r1t_A Transcriptional repress 95.1 0.013 4.4E-07 45.0 3.0 59 40-106 47-105 (122)
339 1z7u_A Hypothetical protein EF 95.0 0.0096 3.3E-07 45.0 2.2 79 19-111 11-90 (112)
340 2fsw_A PG_0823 protein; alpha- 95.0 0.033 1.1E-06 41.5 5.2 80 18-111 13-93 (107)
341 2y75_A HTH-type transcriptiona 95.0 0.026 8.8E-07 43.7 4.7 48 53-107 25-72 (129)
342 1ylf_A RRF2 family protein; st 95.0 0.025 8.4E-07 45.1 4.6 64 32-108 13-76 (149)
343 1r7j_A Conserved hypothetical 95.0 0.019 6.3E-07 42.0 3.5 47 55-111 21-67 (95)
344 3df8_A Possible HXLR family tr 94.9 0.013 4.4E-07 44.2 2.7 73 21-111 18-93 (111)
345 2htj_A P fimbrial regulatory p 94.9 0.018 6.3E-07 40.5 3.3 43 44-90 5-47 (81)
346 1xn7_A Hypothetical protein YH 94.9 0.014 4.6E-07 41.0 2.4 43 44-90 7-49 (78)
347 3lwf_A LIN1550 protein, putati 94.9 0.032 1.1E-06 45.0 5.0 65 32-107 26-90 (159)
348 1yyv_A Putative transcriptiona 94.8 0.016 5.6E-07 45.1 3.1 81 17-111 22-103 (131)
349 3k69_A Putative transcription 94.8 0.054 1.8E-06 43.8 6.3 65 32-108 11-75 (162)
350 2gxg_A 146AA long hypothetical 94.7 0.025 8.6E-07 44.4 3.9 66 41-111 39-104 (146)
351 2k02_A Ferrous iron transport 94.6 0.014 4.6E-07 41.8 1.8 44 44-91 7-50 (87)
352 3k0l_A Repressor protein; heli 94.6 0.017 6E-07 46.4 2.8 67 41-111 48-114 (162)
353 2f2e_A PA1607; transcription f 94.6 0.026 9E-07 44.8 3.7 76 21-111 15-90 (146)
354 2qww_A Transcriptional regulat 94.5 0.056 1.9E-06 42.8 5.6 67 41-111 43-111 (154)
355 3t8r_A Staphylococcus aureus C 94.5 0.039 1.3E-06 43.6 4.4 65 33-108 11-75 (143)
356 1on2_A Transcriptional regulat 94.4 0.04 1.4E-06 43.2 4.5 50 53-111 21-70 (142)
357 3g3z_A NMB1585, transcriptiona 94.3 0.029 9.8E-07 44.1 3.5 67 41-111 33-99 (145)
358 3deu_A Transcriptional regulat 94.2 0.014 4.6E-07 47.4 1.3 68 41-111 55-122 (166)
359 3hsr_A HTH-type transcriptiona 94.2 0.02 6.9E-07 44.8 2.2 67 41-111 38-104 (140)
360 3oop_A LIN2960 protein; protei 94.2 0.01 3.5E-07 46.6 0.5 67 41-111 39-105 (143)
361 2fbh_A Transcriptional regulat 94.1 0.024 8.3E-07 44.4 2.6 66 42-111 40-106 (146)
362 2wte_A CSA3; antiviral protein 94.1 0.018 6.2E-07 50.0 2.0 61 42-111 155-215 (244)
363 3cdh_A Transcriptional regulat 94.1 0.032 1.1E-06 44.4 3.3 67 41-111 45-111 (155)
364 3nrv_A Putative transcriptiona 94.1 0.022 7.4E-07 44.9 2.3 67 41-111 42-108 (148)
365 3kp7_A Transcriptional regulat 94.0 0.094 3.2E-06 41.4 6.0 65 42-111 41-107 (151)
366 2jt1_A PEFI protein; solution 94.0 0.038 1.3E-06 38.5 3.1 37 52-91 22-58 (77)
367 3bja_A Transcriptional regulat 94.0 0.025 8.5E-07 43.9 2.5 67 41-111 35-101 (139)
368 1jgs_A Multiple antibiotic res 94.0 0.019 6.5E-07 44.6 1.7 66 42-111 37-102 (138)
369 3bro_A Transcriptional regulat 93.9 0.022 7.6E-07 44.4 2.0 67 42-111 37-104 (141)
370 2nnn_A Probable transcriptiona 93.9 0.011 3.6E-07 46.2 0.1 67 41-111 40-106 (140)
371 3fm5_A Transcriptional regulat 93.9 0.032 1.1E-06 44.1 2.9 68 41-111 41-108 (150)
372 1tbx_A ORF F-93, hypothetical 93.9 0.027 9.1E-07 41.3 2.2 61 44-111 13-77 (99)
373 3e6m_A MARR family transcripti 93.8 0.11 3.8E-06 41.5 6.1 67 41-111 55-121 (161)
374 4hbl_A Transcriptional regulat 93.8 0.075 2.6E-06 41.9 5.1 67 41-111 43-109 (149)
375 2hr3_A Probable transcriptiona 93.8 0.039 1.3E-06 43.3 3.3 68 41-111 37-104 (147)
376 1lj9_A Transcriptional regulat 93.8 0.019 6.4E-07 45.0 1.3 66 42-111 32-97 (144)
377 3tgn_A ADC operon repressor AD 93.7 0.041 1.4E-06 43.1 3.2 66 41-111 40-105 (146)
378 1g55_A DNA cytosine methyltran 93.6 0.39 1.3E-05 43.7 10.1 124 202-350 3-145 (343)
379 1s3j_A YUSO protein; structura 93.6 0.14 4.8E-06 40.4 6.3 66 42-111 40-105 (155)
380 3bj6_A Transcriptional regulat 93.6 0.14 4.9E-06 40.2 6.3 67 41-111 42-108 (152)
381 3bpv_A Transcriptional regulat 93.5 0.017 5.9E-07 44.8 0.6 66 42-111 32-97 (138)
382 4aik_A Transcriptional regulat 93.4 0.065 2.2E-06 42.6 4.0 65 44-111 36-100 (151)
383 1z91_A Organic hydroperoxide r 93.3 0.046 1.6E-06 42.9 3.0 69 41-113 42-110 (147)
384 3boq_A Transcriptional regulat 93.3 0.051 1.7E-06 43.4 3.2 68 41-111 49-116 (160)
385 2eth_A Transcriptional regulat 93.3 0.039 1.3E-06 43.8 2.5 98 10-111 12-112 (154)
386 3cjn_A Transcriptional regulat 93.3 0.023 8E-07 45.5 1.1 67 41-111 54-120 (162)
387 2fa5_A Transcriptional regulat 93.3 0.036 1.2E-06 44.4 2.2 67 41-111 51-117 (162)
388 2rdp_A Putative transcriptiona 93.3 0.035 1.2E-06 43.8 2.1 67 41-111 44-110 (150)
389 2lnb_A Z-DNA-binding protein 1 93.2 0.032 1.1E-06 38.2 1.5 55 41-104 21-75 (80)
390 3eco_A MEPR; mutlidrug efflux 93.2 0.046 1.6E-06 42.4 2.7 68 41-111 33-101 (139)
391 3s2w_A Transcriptional regulat 93.1 0.032 1.1E-06 44.6 1.8 66 42-111 53-118 (159)
392 3r0a_A Putative transcriptiona 93.1 0.028 9.6E-07 43.1 1.3 48 41-91 28-76 (123)
393 1xd7_A YWNA; structural genomi 93.1 0.092 3.2E-06 41.5 4.4 62 32-108 8-69 (145)
394 2x4h_A Hypothetical protein SS 93.1 0.098 3.3E-06 40.7 4.5 48 53-110 30-77 (139)
395 2frh_A SARA, staphylococcal ac 93.0 0.074 2.5E-06 40.8 3.7 66 43-111 41-107 (127)
396 2bv6_A MGRA, HTH-type transcri 93.0 0.043 1.5E-06 42.8 2.3 67 41-111 39-105 (142)
397 2qvo_A Uncharacterized protein 92.9 0.072 2.5E-06 38.6 3.3 52 54-111 30-81 (95)
398 3hrs_A Metalloregulator SCAR; 92.9 0.12 3.9E-06 43.9 5.0 51 52-111 18-68 (214)
399 2lkp_A Transcriptional regulat 92.8 0.53 1.8E-05 35.4 8.3 67 11-91 13-79 (119)
400 2pex_A Transcriptional regulat 92.8 0.045 1.5E-06 43.3 2.1 68 41-112 49-116 (153)
401 1sfx_A Conserved hypothetical 92.8 0.036 1.2E-06 40.9 1.4 46 42-91 23-68 (109)
402 3f3x_A Transcriptional regulat 92.8 0.15 5E-06 39.8 5.1 66 41-111 39-104 (144)
403 2h09_A Transcriptional regulat 92.7 0.055 1.9E-06 43.1 2.6 50 53-111 53-102 (155)
404 2obp_A Putative DNA-binding pr 92.6 0.16 5.4E-06 36.9 4.7 52 53-109 35-86 (96)
405 3u2r_A Regulatory protein MARR 92.6 0.1 3.5E-06 42.1 4.1 97 12-111 16-116 (168)
406 2a61_A Transcriptional regulat 92.6 0.032 1.1E-06 43.6 1.0 67 41-111 35-101 (145)
407 3jw4_A Transcriptional regulat 92.5 0.057 2E-06 42.5 2.4 67 42-111 44-111 (148)
408 2zkz_A Transcriptional repress 92.5 0.036 1.2E-06 40.7 1.1 48 53-107 40-87 (99)
409 2pg4_A Uncharacterized protein 92.4 0.035 1.2E-06 40.3 0.9 54 53-111 29-83 (95)
410 2fbi_A Probable transcriptiona 92.1 0.031 1.1E-06 43.5 0.3 67 41-111 38-104 (142)
411 3i71_A Ethanolamine utilizatio 92.0 0.17 6E-06 32.3 3.6 44 53-106 17-60 (68)
412 3g7u_A Cytosine-specific methy 91.9 1.4 5E-05 40.5 11.5 96 202-304 3-122 (376)
413 2p4w_A Transcriptional regulat 91.6 0.091 3.1E-06 44.1 2.7 68 36-108 12-81 (202)
414 1g60_A Adenine-specific methyl 91.5 0.24 8.3E-06 43.1 5.5 40 199-240 211-251 (260)
415 3nqo_A MARR-family transcripti 91.5 0.13 4.4E-06 42.5 3.5 68 41-111 43-111 (189)
416 3qv2_A 5-cytosine DNA methyltr 91.4 0.39 1.3E-05 43.4 6.9 127 199-351 8-157 (327)
417 1bja_A Transcription regulator 91.4 0.089 3E-06 38.1 2.1 57 44-111 21-78 (95)
418 4b8x_A SCO5413, possible MARR- 91.3 0.11 3.8E-06 41.0 2.7 56 53-111 50-105 (147)
419 2qlz_A Transcription factor PF 91.1 0.041 1.4E-06 47.2 0.0 71 33-108 6-79 (232)
420 3tos_A CALS11; methyltransfera 91.1 0.63 2.2E-05 40.4 7.6 95 199-301 68-217 (257)
421 2fbk_A Transcriptional regulat 91.0 0.032 1.1E-06 45.8 -0.7 68 41-111 71-140 (181)
422 2c7p_A Modification methylase 90.9 1.7 5.9E-05 39.1 10.7 121 201-350 11-149 (327)
423 2o03_A Probable zinc uptake re 90.5 0.11 3.9E-06 40.1 2.1 61 38-103 10-75 (131)
424 3u1d_A Uncharacterized protein 90.1 1.6 5.5E-05 34.4 8.4 79 20-109 19-103 (151)
425 2fe3_A Peroxide operon regulat 89.9 0.23 7.9E-06 39.1 3.5 60 40-104 23-87 (145)
426 2d1h_A ST1889, 109AA long hypo 89.8 0.23 7.8E-06 36.4 3.2 36 53-91 35-70 (109)
427 3pvc_A TRNA 5-methylaminomethy 89.6 0.69 2.3E-05 46.4 7.5 95 200-297 58-208 (689)
428 1uly_A Hypothetical protein PH 89.6 0.23 7.7E-06 41.3 3.3 52 34-90 15-66 (192)
429 1p6r_A Penicillinase repressor 89.5 0.094 3.2E-06 36.8 0.8 49 42-91 12-61 (82)
430 2fxa_A Protease production reg 89.4 0.097 3.3E-06 44.1 1.0 66 42-111 51-116 (207)
431 2oo3_A Protein involved in cat 89.4 1.2 4.2E-05 39.0 8.0 101 200-305 91-203 (283)
432 2pn6_A ST1022, 150AA long hypo 89.1 0.2 6.9E-06 39.5 2.6 46 41-90 5-50 (150)
433 1q1h_A TFE, transcription fact 89.0 0.096 3.3E-06 39.0 0.6 45 43-90 22-66 (110)
434 4g6q_A Putative uncharacterize 89.0 0.11 3.8E-06 42.8 1.0 72 34-110 18-92 (182)
435 4fx0_A Probable transcriptiona 89.0 0.27 9.4E-06 38.7 3.3 55 53-111 51-105 (148)
436 2py6_A Methyltransferase FKBM; 89.0 0.51 1.8E-05 44.1 5.7 56 199-254 225-293 (409)
437 1sfu_A 34L protein; protein/Z- 88.7 0.44 1.5E-05 32.6 3.7 42 46-91 22-63 (75)
438 3iht_A S-adenosyl-L-methionine 88.5 1.3 4.3E-05 35.1 6.6 56 199-254 39-94 (174)
439 1okr_A MECI, methicillin resis 88.4 0.086 2.9E-06 40.0 -0.0 51 53-111 23-80 (123)
440 2k4b_A Transcriptional regulat 88.4 0.11 3.7E-06 38.2 0.4 50 41-91 37-87 (99)
441 4h0n_A DNMT2; SAH binding, tra 88.3 0.91 3.1E-05 41.1 6.7 125 202-352 4-147 (333)
442 1mzb_A Ferric uptake regulatio 88.3 0.32 1.1E-05 37.8 3.2 60 40-104 19-84 (136)
443 1v4r_A Transcriptional repress 88.2 0.56 1.9E-05 34.3 4.4 53 35-91 15-69 (102)
444 3mwm_A ZUR, putative metal upt 87.9 0.4 1.4E-05 37.4 3.6 65 39-105 14-80 (139)
445 2cfx_A HTH-type transcriptiona 87.9 0.24 8.3E-06 38.8 2.3 46 41-90 7-52 (144)
446 2w25_A Probable transcriptiona 87.8 0.24 8.4E-06 39.1 2.3 46 41-90 9-54 (150)
447 3ps9_A TRNA 5-methylaminomethy 87.8 1.7 5.8E-05 43.4 8.9 95 200-297 66-216 (676)
448 1j5y_A Transcriptional regulat 87.2 0.3 1E-05 40.3 2.6 56 41-106 23-79 (187)
449 3i4p_A Transcriptional regulat 87.2 0.31 1.1E-05 39.1 2.6 47 40-90 4-50 (162)
450 2xig_A Ferric uptake regulatio 87.2 0.33 1.1E-05 38.5 2.7 62 38-104 26-92 (150)
451 2p5v_A Transcriptional regulat 86.9 0.29 1E-05 39.2 2.3 46 41-90 12-57 (162)
452 1p4x_A Staphylococcal accessor 86.8 0.29 1E-05 42.4 2.4 68 41-111 160-228 (250)
453 2cg4_A Regulatory protein ASNC 86.7 0.27 9.3E-06 38.9 2.0 46 41-90 10-55 (152)
454 3ubt_Y Modification methylase 86.5 3.7 0.00013 36.7 9.8 120 202-349 1-138 (331)
455 1zkd_A DUF185; NESG, RPR58, st 86.2 2.1 7.3E-05 39.4 7.9 63 169-237 55-124 (387)
456 2cyy_A Putative HTH-type trans 85.8 0.29 1E-05 38.7 1.7 46 41-90 9-54 (151)
457 1i1g_A Transcriptional regulat 85.7 0.3 1E-05 38.0 1.7 46 42-91 7-52 (141)
458 2e1c_A Putative HTH-type trans 85.6 0.34 1.2E-05 39.3 2.1 47 40-90 28-74 (171)
459 1f8f_A Benzyl alcohol dehydrog 85.6 4.5 0.00015 36.8 10.0 93 198-302 188-291 (371)
460 2xvc_A ESCRT-III, SSO0910; cel 85.6 0.27 9.3E-06 31.4 1.1 46 42-90 13-58 (59)
461 2dbb_A Putative HTH-type trans 85.5 0.35 1.2E-05 38.2 2.0 46 41-90 11-56 (151)
462 3s2e_A Zinc-containing alcohol 85.3 6.7 0.00023 35.1 10.9 92 198-301 164-264 (340)
463 2ia0_A Putative HTH-type trans 85.2 0.4 1.4E-05 38.9 2.3 46 41-90 19-64 (171)
464 3cta_A Riboflavin kinase; stru 85.0 1.1 3.6E-05 38.2 5.0 53 53-111 26-78 (230)
465 3k2z_A LEXA repressor; winged 84.4 0.43 1.5E-05 39.6 2.2 36 53-91 23-58 (196)
466 1fx7_A Iron-dependent represso 84.4 0.71 2.4E-05 39.3 3.6 48 55-111 25-72 (230)
467 4ej6_A Putative zinc-binding d 84.4 6 0.0002 36.1 10.2 95 198-303 180-287 (370)
468 3b1f_A Putative prephenate deh 84.1 5.4 0.00018 34.8 9.4 83 202-289 7-93 (290)
469 3uko_A Alcohol dehydrogenase c 84.0 5.4 0.00018 36.4 9.7 93 198-302 191-297 (378)
470 2g9w_A Conserved hypothetical 83.9 0.4 1.4E-05 37.2 1.7 51 41-91 11-62 (138)
471 1ku9_A Hypothetical protein MJ 83.9 0.66 2.2E-05 36.0 3.0 36 53-91 40-75 (152)
472 2qq9_A Diphtheria toxin repres 83.8 1.1 3.6E-05 38.1 4.5 48 54-110 24-71 (226)
473 1pl8_A Human sorbitol dehydrog 83.5 5.6 0.00019 35.9 9.6 92 198-301 169-274 (356)
474 2pjp_A Selenocysteine-specific 83.2 0.88 3E-05 34.5 3.3 54 41-105 9-62 (121)
475 2esh_A Conserved hypothetical 83.2 1 3.6E-05 33.8 3.7 67 40-111 14-90 (118)
476 2vn2_A DNAD, chromosome replic 82.7 0.96 3.3E-05 34.7 3.4 36 53-91 50-85 (128)
477 1pqw_A Polyketide synthase; ro 82.5 6.7 0.00023 31.9 8.9 89 198-301 36-138 (198)
478 2p8t_A Hypothetical protein PH 82.5 1.2 4.3E-05 36.8 4.2 48 53-110 29-76 (200)
479 2dph_A Formaldehyde dismutase; 82.3 5.2 0.00018 36.8 8.9 97 198-302 183-301 (398)
480 1cf7_A Protein (transcription 82.2 1.2 4E-05 30.7 3.3 37 53-91 29-65 (76)
481 2w57_A Ferric uptake regulatio 82.2 0.4 1.4E-05 38.0 1.0 60 40-104 18-83 (150)
482 3two_A Mannitol dehydrogenase; 82.1 2.7 9.3E-05 37.9 6.8 90 198-301 174-266 (348)
483 3ggo_A Prephenate dehydrogenas 82.0 6.4 0.00022 35.0 9.1 84 201-289 33-120 (314)
484 2b0l_A GTP-sensing transcripti 82.0 1.4 4.8E-05 32.2 3.9 45 43-91 32-77 (102)
485 1lss_A TRK system potassium up 81.9 12 0.0004 28.1 9.6 87 201-298 4-100 (140)
486 2dk5_A DNA-directed RNA polyme 81.8 1 3.5E-05 32.3 3.0 36 53-91 35-70 (91)
487 4esf_A PADR-like transcription 81.3 1.3 4.4E-05 33.3 3.6 66 40-110 12-85 (117)
488 3fwz_A Inner membrane protein 80.9 14 0.00047 28.2 9.7 88 201-298 7-103 (140)
489 3ius_A Uncharacterized conserv 80.1 18 0.00063 30.9 11.4 94 202-301 6-103 (286)
490 1hsj_A Fusion protein consisti 79.8 1.3 4.3E-05 42.2 3.9 67 42-111 407-474 (487)
491 4eez_A Alcohol dehydrogenase 1 79.5 22 0.00074 31.7 12.0 93 198-301 161-264 (348)
492 3elk_A Putative transcriptiona 79.5 1.1 3.7E-05 33.8 2.6 69 38-111 13-89 (117)
493 3jv7_A ADH-A; dehydrogenase, n 79.5 3.4 0.00012 37.2 6.5 94 198-302 169-272 (345)
494 2qlz_A Transcription factor PF 79.4 2.1 7.3E-05 36.4 4.7 52 42-104 168-219 (232)
495 3l4b_C TRKA K+ channel protien 78.7 17 0.00058 30.0 10.3 86 203-298 2-97 (218)
496 1sd4_A Penicillinase repressor 78.6 0.48 1.6E-05 35.9 0.4 49 42-91 13-62 (126)
497 1bia_A BIRA bifunctional prote 78.6 1.3 4.3E-05 39.9 3.3 56 43-107 9-64 (321)
498 1yg2_A Gene activator APHA; vi 78.6 1 3.6E-05 36.6 2.5 62 42-108 5-76 (179)
499 1e3j_A NADP(H)-dependent ketos 78.6 20 0.00068 32.1 11.4 92 198-301 166-272 (352)
500 4dvj_A Putative zinc-dependent 77.9 3.3 0.00011 37.7 5.9 90 200-300 171-270 (363)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=1.5e-54 Score=406.51 Aligned_cols=328 Identities=20% Similarity=0.344 Sum_probs=293.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
++.+.|.+++.||+.+++|++|++|||||.|.+.++|+|++|||+++|+ +++.++||||+|++.|++++... ++
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~--~~- 80 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR--GG- 80 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE--TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc--Cc-
Confidence 7788899999999999999999999999999865579999999999999 68999999999999999986531 11
Q ss_pred cceEecCccch-hhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccC---CChhHHHhhCchHHH
Q 017835 98 EEGYILTSASK-LLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHG---MNFWDYAVRETRLNH 173 (365)
Q Consensus 98 ~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~ 173 (365)
++.|++|+.++ ++.++++.++..++.+.. +..+..|.+|.+.+++++ +++...+| .++|+++.++++...
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-----~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-----NQYLETFGVPAEELFTAIYRSEGERL 154 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-----CCHHHHHSCCCSSHHHHHTSSHHHHH
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-----ChhHHhcCCChHHHHHHHhhCHHHHH
Confidence 46899999887 677888888998887763 456789999999999997 67777776 478999999999999
Q ss_pred HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc------CCCeEE
Q 017835 174 FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS------NGNLKY 247 (365)
Q Consensus 174 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~i~~ 247 (365)
.|.++|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||++
T Consensus 155 ~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~ 232 (353)
T 4a6d_A 155 QFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDF 232 (353)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceee
Confidence 9999999988777788888888 78889999999999999999999999999999999999998874 589999
Q ss_pred EeCCCCC-CCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc
Q 017835 248 VGGNMFE-AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL 326 (365)
Q Consensus 248 ~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 326 (365)
+.+|+++ +.|++|+|+++++||+|+|+++.++|++++++|+| ||+|+|+|.+.++....+ .....+|+.|+..
T Consensus 233 ~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~ 306 (353)
T 4a6d_A 233 QEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQ 306 (353)
T ss_dssp EESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHS
T ss_pred ecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHh
Confidence 9999998 46679999999999999999999999999999999 999999999998765443 3456789999988
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.+|++||.+||+++|+++||+++++++.++..++|+++|
T Consensus 307 ~~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 307 TEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp SSCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 999999999999999999999999999999999999987
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=3.4e-52 Score=392.03 Aligned_cols=345 Identities=29% Similarity=0.490 Sum_probs=299.3
Q ss_pred CchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCC-CCCCHHHHHHHcCC--CCCCcchHHHHHHHHHhcCcee
Q 017835 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHA-KPMTLNQLLTTLQI--HPTKTQCVYHLMRILVHSGFFA 88 (365)
Q Consensus 12 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~-~~~t~~~la~~~~~--~~~~~~~l~~lL~~L~~~g~l~ 88 (365)
...+..++...++++++|++.+++|++|+++|||+.|.+.+ +|+|++|||+++++ +|+++..++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 56678999999999999999999999999999999998743 69999999999997 6534459999999999999999
Q ss_pred ccccC-CCC-ccceEecCccchhhhcCC-CCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHH
Q 017835 89 LQKTS-ENE-QEEGYILTSASKLLLKDH-PLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYA 165 (365)
Q Consensus 89 ~~~~~-~~~-~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 165 (365)
++... +++ .++.|++|+.+++|..+. +.++.+++.+...+.++..|.+|.+++++|. ++|+..+|.++|+++
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-----~~~~~~~g~~~~~~~ 167 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-----IPFNKAYGMSAFEYH 167 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-----CHHHHHHSSCHHHHH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-----ChHHHhcCCCHHHHH
Confidence 86210 000 026899999999887654 5689998887666677899999999999987 899999999999999
Q ss_pred hhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCe
Q 017835 166 VRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNL 245 (365)
Q Consensus 166 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i 245 (365)
..+|+..+.|.+.|...+......+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++..++
T Consensus 168 ~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v 246 (364)
T 3p9c_A 168 GTDPRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGV 246 (364)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTE
T ss_pred HhCHHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCe
Confidence 999999999999999887766677777776 2567899999999999999999999999999999999999999888899
Q ss_pred EEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 246 KYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 246 ~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
+++.+|+++++|..|+|+++++||+|+++++.++|++++++|+| ||+|+|+|.+.++.............+++.|+.
T Consensus 247 ~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~ 323 (364)
T 3p9c_A 247 THVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA 323 (364)
T ss_dssp EEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh
Confidence 99999999987767999999999999999999999999999999 999999999987754332111233567887774
Q ss_pred -ccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 326 -LVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 326 -~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
..+++.||.++|+++|+++||+++++++.++..++||++|
T Consensus 324 ~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 324 HNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred cccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 4689999999999999999999999999999999999987
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=8.9e-51 Score=383.08 Aligned_cols=345 Identities=31% Similarity=0.546 Sum_probs=294.7
Q ss_pred CchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccC---CCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCce
Q 017835 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNH---AKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFF 87 (365)
Q Consensus 12 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~---~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l 87 (365)
...+..++...+++++.|++.+++|++|+++|||+.|.+. ++|+|++|||++++ .+|.+++.++||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 4446788999999999999999999999999999999862 24799999999998 4543456999999999999999
Q ss_pred eccccC-CCCc-cceEecCccchhhhcC-CCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHH
Q 017835 88 ALQKTS-ENEQ-EEGYILTSASKLLLKD-HPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDY 164 (365)
Q Consensus 88 ~~~~~~-~~~~-~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~ 164 (365)
++.... +++. ++.|++|+.++.|..+ .+.++.+++.+..++.++..|.+|.+++++|. ++|+..+|.++|++
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-----~~~~~~~g~~~~~~ 168 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-----IPFNKAYGMNIFDY 168 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-----CHHHHHSSSCHHHH
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-----CHHHHHhCCCHHHH
Confidence 986200 0000 2689999999987754 46689998887766677889999999999986 89999999999999
Q ss_pred HhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCC
Q 017835 165 AVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGN 244 (365)
Q Consensus 165 ~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 244 (365)
+..+|+..+.|.+.|...+......+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++..+
T Consensus 169 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 247 (368)
T 3reo_A 169 HGTDHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSG 247 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred HhhCHHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCC
Confidence 9999999999999999887766677777775 256779999999999999999999999999999999999999988889
Q ss_pred eEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh
Q 017835 245 LKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM 324 (365)
Q Consensus 245 i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 324 (365)
++++.+|+++++|..|+|++.++||||+++++.++|++++++|+| ||+|+|+|.+.++.............+++.|+
T Consensus 248 v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 324 (368)
T 3reo_A 248 VEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALML 324 (368)
T ss_dssp EEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHH
Confidence 999999999987767999999999999999999999999999999 99999999998765443211223356777777
Q ss_pred hc-cCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 325 VL-VKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 325 ~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.. .+++.||.++|+++|+++||+++++.+..+..++||++|
T Consensus 325 ~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 325 AYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred hhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 64 489999999999999999999999999999999999987
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1.8e-50 Score=378.56 Aligned_cols=325 Identities=24% Similarity=0.430 Sum_probs=290.9
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCC
Q 017835 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSE 94 (365)
Q Consensus 15 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 94 (365)
...++...+++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++||||+|++.|+|++ +
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~--- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S--- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E---
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c---
Confidence 345788899999999999999999999999999985 79999999999999 67999999999999999999 4
Q ss_pred CCccceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHH
Q 017835 95 NEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHF 174 (365)
Q Consensus 95 ~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 174 (365)
++.|++|+.++.|.++++.++.+++.+..++..+..|.+|+++++++. ++|+..+|.++|+++.++|+..+.
T Consensus 89 ---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-----~~~~~~~g~~~~~~~~~~~~~~~~ 160 (348)
T 3lst_A 89 ---DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-----PAFADIFGSSLDAYFDGDAEVEAL 160 (348)
T ss_dssp ---TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-----CCHHHHHSSCHHHHHTTCHHHHHH
T ss_pred ---CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-----ChhhHHhCCCHHHHHHhCHHHHHH
Confidence 699999999998888877788988887656556789999999999886 788888998999999999999999
Q ss_pred HHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-----CCCeEEEe
Q 017835 175 FNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-----NGNLKYVG 249 (365)
Q Consensus 175 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~i~~~~ 249 (365)
|.+.|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .+|++++.
T Consensus 161 f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~ 238 (348)
T 3lst_A 161 YYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVE 238 (348)
T ss_dssp HHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEE
T ss_pred HHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEe
Confidence 999999988777788888888 78889999999999999999999999999999999877773321 56899999
Q ss_pred CCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 250 GNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 250 ~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
+|+++++|.||+|++.+++|||+++++.++|++++++||| ||+|+|.|.+.++.... .....+++.++...++
T Consensus 239 ~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~~~ 311 (348)
T 3lst_A 239 GDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDA----HQSKEMDFMMLAARTG 311 (348)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSC----CHHHHHHHHHHHTTSC
T ss_pred cCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhhhcChhhhhcCCC
Confidence 9999877799999999999999999999999999999999 99999999988776432 2335677777777789
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+.++.++|.++|+++||+++++++..+..++|+++|
T Consensus 312 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 312 QERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 999999999999999999999999777899999986
No 5
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=4.7e-50 Score=376.42 Aligned_cols=346 Identities=47% Similarity=0.881 Sum_probs=296.9
Q ss_pred CCCCCCchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc
Q 017835 7 KNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF 86 (365)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~ 86 (365)
.++..+.++.+++...+++++.+++.+++|++++++|||+.|...++|.|++|||+++|++|.+++.++||||+|++.|+
T Consensus 4 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gl 83 (352)
T 1fp2_A 4 SINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGF 83 (352)
T ss_dssp ----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTS
T ss_pred cccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCe
Confidence 34555668899999999999999999999999999999999986335999999999999976668899999999999999
Q ss_pred eecc--ccCCCCccceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhh-cCCCCCCCCccccccCCChhH
Q 017835 87 FALQ--KTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQ-NDDDDDAATTFALPHGMNFWD 163 (365)
Q Consensus 87 l~~~--~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~g~~~~~ 163 (365)
|++. + ++.|++|+.+++|.++++.++.+++.+..++..+..|.+|+++++ +|. ++|+.++|.++|+
T Consensus 84 l~~~~~~------~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-----~~~~~~~g~~~~~ 152 (352)
T 1fp2_A 84 FEIITKE------EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-----TLFGVTLGSGFWD 152 (352)
T ss_dssp EEEEESS------SEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-----CHHHHHHSSCHHH
T ss_pred EEEecCC------CCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-----ChHHHHcCCCHHH
Confidence 9987 3 589999999999998887789999887766667889999999999 665 8898888999999
Q ss_pred HHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCC
Q 017835 164 YAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNG 243 (365)
Q Consensus 164 ~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 243 (365)
++.++|+..+.|.+.|.......... ++.+++.+++..+|||||||+|.++..+++++|+++++++|++.+++.+++..
T Consensus 153 ~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 231 (352)
T 1fp2_A 153 FLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN 231 (352)
T ss_dssp HHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBT
T ss_pred HHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCC
Confidence 99999999999999999887665555 67773236778999999999999999999999999999999999999888766
Q ss_pred CeEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh
Q 017835 244 NLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM 323 (365)
Q Consensus 244 ~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 323 (365)
+++++.+|+++++|.||+|++.+++|||+++++.++|++++++|+|.++||+|+|.|...++....+........+++.|
T Consensus 232 ~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 311 (352)
T 1fp2_A 232 NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM 311 (352)
T ss_dssp TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG
T ss_pred CcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHH
Confidence 79999999998888899999999999999998899999999999971126999999998876543210112334667766
Q ss_pred hhccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 324 MVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 324 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+. .+++.|+.++|.++|+++||+++++++.++..++|+++|
T Consensus 312 ~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 312 AC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp GG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred Hh-ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 65 558889999999999999999999999888899999987
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=1e-49 Score=376.21 Aligned_cols=323 Identities=26% Similarity=0.502 Sum_probs=291.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCC
Q 017835 17 LQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENE 96 (365)
Q Consensus 17 ~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 96 (365)
.....++++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++||||+|++.|++++.+
T Consensus 36 ~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~----- 105 (369)
T 3gwz_A 36 AAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG----- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS-----
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC-----
Confidence 3667789999999999999999999999999985 79999999999999 6799999999999999999975
Q ss_pred ccce-EecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHH
Q 017835 97 QEEG-YILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFF 175 (365)
Q Consensus 97 ~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 175 (365)
++. |.+|+.++.|.++++.++.+++.+...+..+..|.+|.++++++. ++|...+|.++|+++.++|+..+.|
T Consensus 106 -~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-----~~~~~~~g~~~~~~~~~~~~~~~~f 179 (369)
T 3gwz_A 106 -HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-----ASFDVANGTSFWQLTHEDPKARELF 179 (369)
T ss_dssp -STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-----CSHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred -CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-----ChhHhhcCCCHHHHHHhCHHHHHHH
Confidence 678 999999998888877788888887655556789999999999987 7888889989999999999999999
Q ss_pred HHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEE
Q 017835 176 NEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYV 248 (365)
Q Consensus 176 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~ 248 (365)
.+.|..........+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++|+++
T Consensus 180 ~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~ 257 (369)
T 3gwz_A 180 NRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL 257 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEe
Confidence 99999887777777888887 67889999999999999999999999999999999888888874 4789999
Q ss_pred eCCCCCCCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc
Q 017835 249 GGNMFEAIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV 327 (365)
Q Consensus 249 ~~d~~~~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (365)
.+|+++++| .||+|++.+++|+|+++++.++|++++++|+| ||+|+|.|.+.++.... . ...+++.|+...
T Consensus 258 ~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~ 329 (369)
T 3gwz_A 258 PGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV 329 (369)
T ss_dssp ECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH
T ss_pred ccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc
Confidence 999998777 69999999999999999999999999999999 99999999998776432 2 457788887778
Q ss_pred CccccCHHHHHHHHHhcCCccceEEE-cCCceeEEEEeC
Q 017835 328 KGEERNEKEWAKLFFEAGFSDYKITD-VLGVRSLIEVYP 365 (365)
Q Consensus 328 ~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 365 (365)
+++.||.++|.++|+++||+++++++ ..+..++|+++|
T Consensus 330 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 330 GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 89999999999999999999999999 577899999986
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=7.9e-50 Score=375.75 Aligned_cols=348 Identities=47% Similarity=0.866 Sum_probs=296.7
Q ss_pred hHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc-
Q 017835 14 DELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT- 92 (365)
Q Consensus 14 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~- 92 (365)
.+.+++...+++++.+++.+++|++++++|||+.|...++|+|++|||+++|++|.+++.++||||+|++.|+|++...
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~ 84 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 84 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEeccc
Confidence 5678889999999999999999999999999999986335999999999999987678999999999999999998610
Q ss_pred -CC-CCc-cceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCc
Q 017835 93 -SE-NEQ-EEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRET 169 (365)
Q Consensus 93 -~~-~~~-~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 169 (365)
.+ +|. ++.|++|+.+++|.++++.++.+++.+..++.++..|.+|+++++++.+ .++|+.++|.++|+++.++|
T Consensus 85 ~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~---~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 85 GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKE---QTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp CSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCC---CCHHHHHHSSCHHHHHTSGG
T ss_pred ccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---CChHHHHhCCCHHHHHhcCh
Confidence 00 000 2789999999999988877899999887666678899999999999831 27888888999999999999
Q ss_pred hHHH--HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEE
Q 017835 170 RLNH--FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKY 247 (365)
Q Consensus 170 ~~~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~ 247 (365)
+..+ .|++.|........ .+++.+++.+++..+|||||||+|.++..+++++|+++++++|++.+++.+++..++++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999988776555 67777732367789999999999999999999999999999999999998887677999
Q ss_pred EeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc
Q 017835 248 VGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV 327 (365)
Q Consensus 248 ~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (365)
+.+|+++++|.||+|+++++||||+++++.++|++++++|+|.++||+|+|.|...++....+........+++.|+...
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 320 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF 320 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC
Confidence 99999998888999999999999999988999999999999711169999999988765432101123456777777667
Q ss_pred CccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 328 KGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 328 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+++.|+.++|.++|+++||+++++++.++..++|+++|
T Consensus 321 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 321 LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 88999999999999999999999999988899999987
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=3.6e-49 Score=373.06 Aligned_cols=354 Identities=29% Similarity=0.494 Sum_probs=278.6
Q ss_pred CCCCCCCCCCchHhhhHHHHHH--HHHHhHHHHHHHHHHHHcCcccccccCCCC---CCHHHHHHHcCC---CCCCcchH
Q 017835 3 LTKGKNNDNISDELLQSQAHVW--NNIFSFVNSMSLKCAIQLGIPDIIHNHAKP---MTLNQLLTTLQI---HPTKTQCV 74 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~--~~~~g~~~~~~L~~a~~lglf~~L~~~~~~---~t~~~la~~~~~---~~~~~~~l 74 (365)
+++..+.....++.+++...++ +++.|++.+++|++++++|||+.|...++| +|++|||+++|+ +|.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l 85 (372)
T 1fp1_D 6 ITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRL 85 (372)
T ss_dssp -------------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHH
T ss_pred ccccccccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHH
Confidence 4667777777888889999999 999999999999999999999999863216 999999999999 76668999
Q ss_pred HHHHHHHHhcCceecccc-CCCC-ccceEecCccchhhhcCCC-CChHHHHHHccCcccccchhhHHHHhhcC-CCCCCC
Q 017835 75 YHLMRILVHSGFFALQKT-SENE-QEEGYILTSASKLLLKDHP-LSLAPFLLAMLDPILTKPWHQVSTWIQND-DDDDAA 150 (365)
Q Consensus 75 ~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~ 150 (365)
+||||+|++.|+|++... +++| .++.|++|+.+++|.++++ .++.+++.+..++.++..|.+|+++++++ .
T Consensus 86 ~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~----- 160 (372)
T 1fp1_D 86 DRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI----- 160 (372)
T ss_dssp HHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC------
T ss_pred HHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-----
Confidence 999999999999998610 0000 0258999999999988876 67888888776666778999999999998 5
Q ss_pred CccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEe
Q 017835 151 TTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVF 230 (365)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~ 230 (365)
++|+.++|.++|+++.++|+....|.+.|..........+++.++ .+++..+|||||||+|.++..+++++|+++++++
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~ 239 (372)
T 1fp1_D 161 DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINF 239 (372)
T ss_dssp -------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEe
Confidence 788888899999999999999999999998877666677777775 2567789999999999999999999999999999
Q ss_pred echHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc
Q 017835 231 DQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY 310 (365)
Q Consensus 231 D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~ 310 (365)
|++.+++.+++..+++++.+|+++++|.||+|++.++||||+++++.++|++++++|+| ||+|+|.|...++.....
T Consensus 240 D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~ 316 (372)
T 1fp1_D 240 DLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTS 316 (372)
T ss_dssp ECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSS
T ss_pred ChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccc
Confidence 99999999887678999999999887789999999999999999889999999999999 999999999887654321
Q ss_pred cchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEEeC
Q 017835 311 KTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEVYP 365 (365)
Q Consensus 311 ~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 365 (365)
........+++.++...+++.|+.++|.++|+++||+++++++. ++..++||++|
T Consensus 317 ~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 317 EESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred hHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 01113456677666555788999999999999999999999984 55359999987
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=5e-49 Score=366.65 Aligned_cols=316 Identities=23% Similarity=0.356 Sum_probs=279.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccce
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG 100 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~ 100 (365)
..+++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++||||+|++.|++.+.+ ++.
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~------~~~ 75 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG------QGV 75 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSB
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC------CCe
Confidence 457899999999999999999999999985 79999999999999 6799999999999999999975 689
Q ss_pred EecCccchhhhcCCCCChHHHHHHccCcccc-cchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHh
Q 017835 101 YILTSASKLLLKDHPLSLAPFLLAMLDPILT-KPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGM 179 (365)
Q Consensus 101 y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 179 (365)
|.+|+.++.|.++++.++.+++.+......+ ..|.+|+++++++. ++|+..+|.++|+++.++|+....|.+.|
T Consensus 76 y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (332)
T 3i53_A 76 YGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-----PAYPVRYGTSFWEDLGSDPVLSASFDTLM 150 (332)
T ss_dssp EEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-----CSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred EEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-----CHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence 9999999988877777888888765333344 78999999999987 78888889899999999999999999999
Q ss_pred hcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCC
Q 017835 180 ASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNM 252 (365)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~ 252 (365)
........+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .+||+++.+|+
T Consensus 151 ~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 228 (332)
T 3i53_A 151 SHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF 228 (332)
T ss_dssp HHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC
Confidence 9877665566677777 56779999999999999999999999999999999989888874 47899999999
Q ss_pred CCCCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccc
Q 017835 253 FEAIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEE 331 (365)
Q Consensus 253 ~~~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 331 (365)
++++| +||+|++.+++|||+++++.++|++++++|+| ||+|+|.|.+.++. .. ...+++.|+...+++.
T Consensus 229 ~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~ 298 (332)
T 3i53_A 229 FDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKE 298 (332)
T ss_dssp TSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCC
Confidence 98777 79999999999999999999999999999999 99999999988765 21 1467777777778999
Q ss_pred cCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 332 RNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
||.++|.++|+++||+++++++.++ .++|++++
T Consensus 299 ~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 299 RSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999999999988 99999875
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.6e-48 Score=359.41 Aligned_cols=319 Identities=22% Similarity=0.383 Sum_probs=284.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
++...+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++||||+|++.|++++.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 567889999999999999999999999999975 79999999999999 6799999999999999999975
Q ss_pred cceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHH
Q 017835 98 EEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNE 177 (365)
Q Consensus 98 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (365)
++.|++|+.++.|. +++.++.+++.+..++.. ..|.+|+++++++. ++|+..+|.++|+++.++|+..+.|.+
T Consensus 76 ~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~f~~ 148 (334)
T 2ip2_A 76 RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-----PGFELAFGEDFYSYLKRCPDAGRRFLL 148 (334)
T ss_dssp TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-----CHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-----ChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence 68999999999888 777788999887765544 88999999999987 788888899999999999999999999
Q ss_pred HhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeC
Q 017835 178 GMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGG 250 (365)
Q Consensus 178 ~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~ 250 (365)
.| ..+......+++.++ +++ .+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+
T Consensus 149 ~m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 224 (334)
T 2ip2_A 149 AM-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224 (334)
T ss_dssp HH-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEES
T ss_pred HH-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecC
Confidence 99 777666677888887 566 9999999999999999999999999999999888887764 478999999
Q ss_pred CCCCCCCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 251 NMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 251 d~~~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
|+++++|+ ||+|++.+++|||+++++.++|++++++|+| ||+++|.|...++.... .....+++.++...++
T Consensus 225 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~ 297 (334)
T 2ip2_A 225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAG 297 (334)
T ss_dssp CTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCC
Confidence 99987764 9999999999999999999999999999999 99999999988765332 2345677777766678
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+.|+.++|.++++++||+++++++.++..++|+++|
T Consensus 298 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 298 RHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 999999999999999999999999988899999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=4.2e-46 Score=350.74 Aligned_cols=328 Identities=17% Similarity=0.207 Sum_probs=268.5
Q ss_pred CchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 12 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
...+.+++...+++++.|++.+++|++++++|||+.|...++|+|++|||+++|+ +++.++||||+|++.|+|+++
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~- 83 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE- 83 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE-
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec-
Confidence 3456788999999999999999999999999999999864479999999999999 679999999999999999885
Q ss_pred cCCCCccceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccC--CChhHHHhhCc
Q 017835 92 TSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHG--MNFWDYAVRET 169 (365)
Q Consensus 92 ~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g--~~~~~~~~~~~ 169 (365)
++.|++|+.+++|.++++ ...++.+. .+..++.|.+|+++++++. .++...+| .++|+++.++|
T Consensus 84 ------~~~y~~t~~s~~L~~~~~--~~~~~~~~-~~~~~~~~~~L~~~lr~g~-----~~~~~~~g~~~~~~~~~~~~~ 149 (363)
T 3dp7_A 84 ------EDRYVLAKAGWFLLNDKM--ARVNMEFN-HDVNYQGLFHLEEALLNGR-----PEGLKVFGEWPTIYEGLSQLP 149 (363)
T ss_dssp ------TTEEEECHHHHHHHHCHH--HHHHHHHH-HHTTHHHHTTHHHHHHHSS-----CGGGGGTCCCSSHHHHGGGSC
T ss_pred ------CCEEecccchHHhhCCCc--ccchheee-cHHhhhhHHHHHHHHhcCC-----CccccccCchHhHHHHHhhCH
Confidence 589999999999887763 22233333 3456889999999999987 56777777 68999999999
Q ss_pred hHHH----HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc----
Q 017835 170 RLNH----FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---- 241 (365)
Q Consensus 170 ~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---- 241 (365)
+..+ .|...|.... ...++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 150 ~~~~~~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 224 (363)
T 3dp7_A 150 EQVQKSWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAG 224 (363)
T ss_dssp HHHHHHHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHh
Confidence 8766 3566555433 233444444 35678999999999999999999999999999999999988875
Q ss_pred ---CCCeEEEeCCCCCC---CC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc-ch
Q 017835 242 ---NGNLKYVGGNMFEA---IP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK-TT 313 (365)
Q Consensus 242 ---~~~i~~~~~d~~~~---~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~-~~ 313 (365)
.+|++++.+|++++ +| +||+|++.++||+|+++++.++|++++++|+| ||+|+|+|.+.++...... +.
T Consensus 225 ~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~ 301 (363)
T 3dp7_A 225 LSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYC 301 (363)
T ss_dssp CTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHH
T ss_pred cCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhH
Confidence 25899999999984 66 59999999999999999999999999999999 9999999998876543210 00
Q ss_pred hhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCCc-eeEEEEeC
Q 017835 314 ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGV-RSLIEVYP 365 (365)
Q Consensus 314 ~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 365 (365)
......++.++...+++.|+.++|.++|+++||+++++++..+. .++|+++|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 302 LTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 11122333444445788999999999999999999999977554 89999875
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=3.5e-45 Score=346.20 Aligned_cols=325 Identities=22% Similarity=0.334 Sum_probs=279.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCC
Q 017835 16 LLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSEN 95 (365)
Q Consensus 16 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~ 95 (365)
..+....+++++.|++.+++|++++++|||+.|.. +|+|++|||+++|+ +++.++||||+|++.|++++.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence 34567789999999999999999999999999964 79999999999999 6899999999999999999864
Q ss_pred Cccc--eEecCccchhhhcCCCCChHHHHHHccCcccc-cchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHH
Q 017835 96 EQEE--GYILTSASKLLLKDHPLSLAPFLLAMLDPILT-KPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLN 172 (365)
Q Consensus 96 ~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 172 (365)
++ .|.+|+.+++|.++++.++..++.+...+..+ ..|.+|.+.++++. ++|...+|.++|+++..+|+..
T Consensus 84 --~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~g~~~~~~~~~~~~~~ 156 (374)
T 1qzz_A 84 --KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-----PAYAGRYGRPFWEDLSADVALA 156 (374)
T ss_dssp --C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-----CSHHHHHSSCHHHHHHHCHHHH
T ss_pred --CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-----ChhhhhhCCCHHHHHhhChHHH
Confidence 56 99999999999988887888888766433345 78899999999987 6788888999999999999999
Q ss_pred HHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCe
Q 017835 173 HFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNL 245 (365)
Q Consensus 173 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i 245 (365)
..|.+.|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .+++
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 234 (374)
T 1qzz_A 157 DSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV 234 (374)
T ss_dssp HHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCce
Confidence 99999998877776777888887 67789999999999999999999999999999999888888774 2489
Q ss_pred EEEeCCCCCCCCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee--ecCCCccCccchhhhhhhhhh
Q 017835 246 KYVGGNMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI--KMESEKADYKTTETQLFMDML 322 (365)
Q Consensus 246 ~~~~~d~~~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~--~~~~~~~~~~~~~~~~~~d~~ 322 (365)
+++.+|+++++|. ||+|++.+++|||+++.+.++|++++++|+| ||+++|.|. ..++.... .....+++.
T Consensus 235 ~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~ 307 (374)
T 1qzz_A 235 TVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLR 307 (374)
T ss_dssp EEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHH
T ss_pred EEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchH
Confidence 9999999987774 9999999999999999888999999999999 999999998 76544221 233466777
Q ss_pred hhhccCccccCHHHHHHHHHhcCCccceEEEcCCce-----eEEEEeC
Q 017835 323 MMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVR-----SLIEVYP 365 (365)
Q Consensus 323 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 365 (365)
++...+++.++.++|.++|+++||++++++..++.. ++|+++|
T Consensus 308 ~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 308 MLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 766667899999999999999999999999988776 8999874
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.1e-44 Score=341.02 Aligned_cols=322 Identities=24% Similarity=0.411 Sum_probs=281.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCcc
Q 017835 19 SQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQE 98 (365)
Q Consensus 19 ~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 98 (365)
..+++++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ ++..++|+|++|++.|++++.+ +
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~------~ 87 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------P 87 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------T
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC------C
Confidence 36788999999999999999999999999974 79999999999999 6899999999999999999965 6
Q ss_pred ceEecCccchhhhcCCCCChHHHHHHccCcc-cccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHH
Q 017835 99 EGYILTSASKLLLKDHPLSLAPFLLAMLDPI-LTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNE 177 (365)
Q Consensus 99 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (365)
+.|++|+.+++|.++++.++..++.+...+. .+..|.+|.+.++++. ++++..+|.++|+++..+|+....|..
T Consensus 88 g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-----~~~~~~~g~~~~~~~~~~p~~~~~f~~ 162 (360)
T 1tw3_A 88 GEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-----PTYESIYGKPFYEDLAGRPDLRASFDS 162 (360)
T ss_dssp TEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-----CCHHHHHSSCHHHHHHTCHHHHHHHHH
T ss_pred CeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-----CHHHHhcCCCHHHHHHhChHHHHHHHH
Confidence 8999999999999888888888876654333 5678899999999986 678888889999999999999999999
Q ss_pred HhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeC
Q 017835 178 GMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGG 250 (365)
Q Consensus 178 ~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~ 250 (365)
.|..........+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++++++.+
T Consensus 163 ~~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 240 (360)
T 1tw3_A 163 LLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 240 (360)
T ss_dssp HHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 999887777778888887 67789999999999999999999999999999999888887764 348999999
Q ss_pred CCCCCCCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee-cCCCccCccchhhhhhhhhhhhhccC
Q 017835 251 NMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK-MESEKADYKTTETQLFMDMLMMVLVK 328 (365)
Q Consensus 251 d~~~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~d~~~~~~~~ 328 (365)
|+++++|. ||+|++.+++|+|+++++.++|++++++|+| ||++++.|.. .++.... .....+++.++...+
T Consensus 241 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~ 313 (360)
T 1tw3_A 241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLG 313 (360)
T ss_dssp CTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcC
Confidence 99987764 9999999999999999889999999999999 9999999988 6544221 223456777665567
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEcCCc-----eeEEEEeC
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDVLGV-----RSLIEVYP 365 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~ 365 (365)
++.++.++|.++|+++||+++++++.++. .++|+++|
T Consensus 314 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 314 GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 88999999999999999999999988665 78999875
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-43 Score=327.55 Aligned_cols=315 Identities=21% Similarity=0.309 Sum_probs=270.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccce
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG 100 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~ 100 (365)
..+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++||||+|++.|+|+++ ++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~-------~~~ 75 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ-------AEG 75 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec-------CCE
Confidence 578999999999999999999999999985 79999999999999 689999999999999999875 689
Q ss_pred EecCccc-hhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHh
Q 017835 101 YILTSAS-KLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGM 179 (365)
Q Consensus 101 y~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 179 (365)
|++|+.+ .++.++++.++.+++.+..++..+..|.+|+++++++. ++++ + |+++.++++....|.+.|
T Consensus 76 y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~-----~-~~~~~~~~~~~~~~~~~~ 144 (335)
T 2r3s_A 76 YRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-----TAIS-----S-EGTLSPEHPVWVQFAKAM 144 (335)
T ss_dssp EEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-----CCST-----T-TGGGSTTCTHHHHHHHHS
T ss_pred EecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-----CCCC-----C-cccccCCHHHHHHHHHHH
Confidence 9999999 68888877788888887755457889999999999986 4443 3 788888898999999999
Q ss_pred hcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCC
Q 017835 180 ASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNM 252 (365)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~ 252 (365)
..........+++.+++...+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp GGGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred HHHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 88776666677777772127789999999999999999999999999999999988887764 35799999999
Q ss_pred CC-CCCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc-Cc
Q 017835 253 FE-AIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV-KG 329 (365)
Q Consensus 253 ~~-~~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 329 (365)
++ +.+. ||+|++.+++|+|+++++.++|++++++|+| ||+++++|...++....+ .....+++.++... ++
T Consensus 225 ~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 298 (335)
T 2r3s_A 225 FEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNG 298 (335)
T ss_dssp TTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSC
T ss_pred ccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCC
Confidence 98 5664 9999999999999999999999999999999 999999999887643322 23456677776655 78
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
+.++.++|.++++++||+++++++.++..++|+++
T Consensus 299 ~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 299 DAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred CcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 89999999999999999999999998877766664
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=1.9e-42 Score=325.57 Aligned_cols=313 Identities=17% Similarity=0.314 Sum_probs=265.8
Q ss_pred chHhhhHHHHHHHHHH-hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 13 SDELLQSQAHVWNNIF-SFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 13 ~~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.++.+++..++++++. |++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~- 97 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE- 97 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEee-
Confidence 4567788889999996 9999999999999999999985 79999999999999 689999999999999999997
Q ss_pred cCCCCccceEecCcc-chhhhcCCC---CChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhh
Q 017835 92 TSENEQEEGYILTSA-SKLLLKDHP---LSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVR 167 (365)
Q Consensus 92 ~~~~~~~~~y~~t~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 167 (365)
++.|++|+. +.++.++++ .++.+++.+. ....+..|.+|+++++++. + |+++..
T Consensus 98 ------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~-----~----------~~~~~~ 155 (359)
T 1x19_A 98 ------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQK-----N----------FKGQVP 155 (359)
T ss_dssp ------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSC-----C----------CCCSSC
T ss_pred ------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCC-----C----------Cccccc
Confidence 479999995 558888777 6888888765 3456788999999999885 1 455566
Q ss_pred Cch---HHHHHHHHhhcCcc-cchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc--
Q 017835 168 ETR---LNHFFNEGMASDTR-LTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-- 241 (365)
Q Consensus 168 ~~~---~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-- 241 (365)
+|+ ....|.+.|..... .....+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++
T Consensus 156 ~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 233 (359)
T 1x19_A 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENA 233 (359)
T ss_dssp SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHH
Confidence 777 88899999998887 76777888887 67889999999999999999999999999999999888888774
Q ss_pred -----CCCeEEEeCCCCC-CCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhh
Q 017835 242 -----NGNLKYVGGNMFE-AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTET 315 (365)
Q Consensus 242 -----~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~ 315 (365)
.++++++.+|+++ +++++|+|++.+++|+|+++++.++|++++++|+| ||+++|+|...++. ..+ ..
T Consensus 234 ~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~~---~~ 306 (359)
T 1x19_A 234 AEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDP-ENP---NF 306 (359)
T ss_dssp HHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCT-TSC---CH
T ss_pred HhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCC-CCc---hH
Confidence 4579999999998 56678999999999999998899999999999999 99999999988765 221 11
Q ss_pred hhhhhhhhhh-ccCccc----cCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 316 QLFMDMLMMV-LVKGEE----RNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 316 ~~~~d~~~~~-~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
...+ .++. ..+++. ++.++|.++|+++||+++++++.+ ..++|+++|
T Consensus 307 ~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 307 DYLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 2222 2222 234666 899999999999999999999988 788999876
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=3.6e-42 Score=322.93 Aligned_cols=315 Identities=16% Similarity=0.265 Sum_probs=261.5
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCC
Q 017835 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSE 94 (365)
Q Consensus 15 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 94 (365)
..++.+..+++++.|++.+.+|++++++|||+.|. +|+|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 20 ~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~---- 89 (352)
T 3mcz_A 20 AALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE---- 89 (352)
T ss_dssp CCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec----
Confidence 34556667999999999999999999999999996 49999999999999 679999999999999999997
Q ss_pred CCccceEecCccch-hhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHH
Q 017835 95 NEQEEGYILTSASK-LLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNH 173 (365)
Q Consensus 95 ~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 173 (365)
++.|.+|+.++ ++.++.+.+++.++.+.. ..+..|.+|++++++|. +.+|+. ..++..+++...
T Consensus 90 ---~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~g~----~~~f~~------~~~~~~~~~~~~ 154 (352)
T 3mcz_A 90 ---GDAFRNTALTERYLTTTSADYIGPIVEHQY--LQWDNWPRLGEILRSEK----PLAFQQ------ESRFAHDTRARD 154 (352)
T ss_dssp ---TTEEEECHHHHHHHSTTCTTCCHHHHHHHH--TTTTTGGGHHHHHTCSS----CCTTSH------HHHTTTCHHHHH
T ss_pred ---CCeeecCHHHHhhccCCChhhHHHHHHHhH--HHHHHHHHHHHHHhCCC----CCCccc------ccccccCHHHHH
Confidence 47899999997 666777778888876542 36789999999999986 233322 123356788889
Q ss_pred HHHHHhhcCcccchHHHHhhccccccC-CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCe
Q 017835 174 FFNEGMASDTRLTSSALIHKCKDVFEG-LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNL 245 (365)
Q Consensus 174 ~~~~~m~~~~~~~~~~~~~~~~~~~~~-~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i 245 (365)
.|.+.|...... ...+++.++ +.+ ..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .+|+
T Consensus 155 ~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (352)
T 3mcz_A 155 AFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRV 231 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCce
Confidence 999999873322 236777887 555 89999999999999999999999999999999888887764 3589
Q ss_pred EEEeCCCCCC---CC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhh
Q 017835 246 KYVGGNMFEA---IP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDM 321 (365)
Q Consensus 246 ~~~~~d~~~~---~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 321 (365)
+++.+|++++ .+ +||+|++.+++|||+++++.++|++++++|+| ||+|+|.|.+.++....+ .....+++
T Consensus 232 ~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~ 305 (352)
T 3mcz_A 232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSL 305 (352)
T ss_dssp EEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHH
T ss_pred EEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhH
Confidence 9999999984 55 49999999999999999999999999999999 999999999988765432 33457777
Q ss_pred hhhhcc-CccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 322 LMMVLV-KGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 322 ~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.++... +++.|+.++|.++|+++||++++.. .+...++.++|
T Consensus 306 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 306 HMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 777544 7889999999999999999998843 34577777664
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.85 E-value=1.7e-20 Score=167.80 Aligned_cols=161 Identities=12% Similarity=0.153 Sum_probs=122.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~ 266 (365)
.+++.+|||||||+|.++..|++.+ |+++++++|+ +.|++.|++ ..+|+++++|+.+ +++++|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4788999999999999999999975 6789999999 999998874 4589999999988 777899999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc--------------cCcccc
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL--------------VKGEER 332 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--------------~~~~~~ 332 (365)
+||++++++..++|++++++|+| ||++++.|............ ....+.++..... ..-...
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999998888999999999999 99999999887654321100 0001111100000 001235
Q ss_pred CHHHHHHHHHhcCCccceEEEc-CCceeEEE
Q 017835 333 NEKEWAKLFFEAGFSDYKITDV-LGVRSLIE 362 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~ 362 (365)
+.+++.++|+++||+.++++-- ..+.++|-
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA 254 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVA 254 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEE
Confidence 8899999999999999888644 44445543
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.82 E-value=7e-19 Score=154.69 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=125.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC-CceEEEecccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN 270 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~ 270 (365)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH 121 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence 35678999999999999999999999999999999 888888775 3489999999988 444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh-------------hhhccCccccCHHHH
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML-------------MMVLVKGEERNEKEW 337 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-------------~~~~~~~~~~t~~e~ 337 (365)
+++++..++|++++++|+| ||++++.+...+........ ....+.... .........++.++|
T Consensus 122 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (234)
T 3dtn_A 122 LEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQ 197 (234)
T ss_dssp SCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHH
Confidence 9998878899999999999 99999999887654321100 000000000 000012345689999
Q ss_pred HHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 338 AKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
.++|+++||++++++......+++..+
T Consensus 198 ~~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 198 LNWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp HHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCceeeeeeecceeEEEEE
Confidence 999999999999998887666665544
No 19
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.78 E-value=5.8e-18 Score=147.22 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=125.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~- 257 (365)
..+++.+. ..++.+|||||||+|.++..+++.+ |..+++++|. +.+++.+++ ..+++++.+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 44555565 6778899999999999999999996 8889999999 888888775 3589999999987 444
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||+++. ..+|++++++|+| ||++++.++......... .....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHHH
Confidence 49999999999999876 7899999999999 999999987665442221 0122358999
Q ss_pred HHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 337 WAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
|.++++++||+++++.........+.++|
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999988877666655553
No 20
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.77 E-value=2.4e-18 Score=149.74 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=122.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-C-CCeEEEeCCCCC-CCC-CceEEE
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-N-GNLKYVGGNMFE-AIP-PADAVL 263 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~-~~i~~~~~d~~~-~~~-~~D~i~ 263 (365)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +.+ .||+|+
T Consensus 36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV 111 (220)
T ss_dssp HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence 4555555 567889999999999999999987 679999999 888888876 3 489999999988 444 699999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh--hhhccCccccCHHHHHHHH
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML--MMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~t~~e~~~ll 341 (365)
+..++||+++++...+|++++++|+| ||.+++.++...................+. .........++.++|.++|
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 99999999999777799999999999 999999987665432210000000000000 0000112334889999999
Q ss_pred HhcCCccceEEEcCCceeEEEEeC
Q 017835 342 FEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 342 ~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+++||+++.+.. ....+++.+.|
T Consensus 189 ~~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 189 ENNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HHTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HHCCCEEEEeec-cceEEEEeehh
Confidence 999998765544 46677777653
No 21
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.77 E-value=1.5e-18 Score=150.62 Aligned_cols=167 Identities=20% Similarity=0.221 Sum_probs=121.1
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-- 257 (365)
.+++.++ .++. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 35 ~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 35 NIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 3444444 3444 9999999999999999998 8889999999 888888775 3589999999988 555
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhh-hhhhhhhhhccCccccCHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQ-LFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||+++. .++|++++++|+| ||++++.+...+............ ....+..........++.++
T Consensus 111 ~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
T 3dlc_A 111 YADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVER 185 (219)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHH
T ss_pred cccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHH
Confidence 49999999999999776 6899999999999 899999875543321110000000 00001100001233458899
Q ss_pred HHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 337 WAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
|.++|+++||+++++.......+++..+
T Consensus 186 ~~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 186 FQNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHHcCCCeEEEEecCCceEEEEec
Confidence 9999999999999999887777765544
No 22
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.75 E-value=3.5e-17 Score=141.94 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=114.8
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCCCCC--CceEEE
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFEAIP--PADAVL 263 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~~~--~~D~i~ 263 (365)
.+++.+. ...+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|+
T Consensus 36 ~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 36 AALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 3444443 1456679999999999999999998 679999999 888888876 3689999999988533 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccC-------ccccCHHH
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK-------GEERNEKE 336 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~t~~e 336 (365)
+..++||+++++...+|++++++|+| ||.+++.+...+.......+.. ............ ....+.++
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHH
Confidence 99999999998889999999999999 9999999886643221100000 000000000011 22359999
Q ss_pred HHHHHHhcCCccceEEEcC
Q 017835 337 WAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~ 355 (365)
|.++++++||++......+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHCCCEEEeeeccc
Confidence 9999999999955444444
No 23
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.75 E-value=1.4e-17 Score=148.85 Aligned_cols=158 Identities=16% Similarity=0.323 Sum_probs=119.7
Q ss_pred CcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 182 DTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
........+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+
T Consensus 21 ~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 21 AKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp --CCCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred cCHHHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 33344456666666 66789999999999999999999864 9999999 888888764 2579999999987
Q ss_pred -CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh--ccCc
Q 017835 255 -AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV--LVKG 329 (365)
Q Consensus 255 -~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~ 329 (365)
+++ .||+|++..++||+++. ..+|++++++|+| ||++++.+...+.... ...++...... ....
T Consensus 97 l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 165 (260)
T 1vl5_A 97 MPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHH 165 (260)
T ss_dssp CCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCCCHH------HHHHHHHHHHhcCcccc
Confidence 655 49999999999999987 6899999999999 9999999887654321 11111111111 1134
Q ss_pred cccCHHHHHHHHHhcCCccceEEEc
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..++.++|.++|+++||+++.+...
T Consensus 166 ~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 166 RAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 5579999999999999998877654
No 24
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.75 E-value=4.7e-18 Score=148.51 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=117.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3478999999999999999999876 8999999 888888775 3789999999988 544 599999999987
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh---hccC------------------
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM---VLVK------------------ 328 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~---~~~~------------------ 328 (365)
++..++..++|++++++|+| ||++++.++..+...... ...........+. ....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence 77777778999999999999 999999887543221100 0000000000000 0000
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
....+ .+|.++|+++||+.+++........+|+++|
T Consensus 191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 11112 4899999999999999999987888999886
No 25
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.75 E-value=1.9e-17 Score=148.93 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=121.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~- 257 (365)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 44556666 6778999999999999999999987 689999999 888887764 3589999999987 554
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||+++. ..+|++++++|+| ||++++.+......... ......+...........++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEG----AKKEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCH----HHHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCCh----hHHHHHHHHHhhcCccCCCCHHH
Confidence 49999999999999877 7899999999999 99999999876543211 11111111111122456679999
Q ss_pred HHHHHHhcCCccceEEEcC
Q 017835 337 WAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~ 355 (365)
|.++++++||+++++...+
T Consensus 199 ~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHcCCeEEEEEECc
Confidence 9999999999998887763
No 26
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.75 E-value=2.9e-17 Score=146.90 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=122.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~ 259 (365)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 34455555 6778899999999999999999987 789999999 888888876 2689999999988 554 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||+++++...+|++++++|+| ||++++.++..+...... . .+..... ..+...++.++|.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~--~~~~~~~--~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D--EFKEYVK--QRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H--HHHHHHH--HHTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H--HHHHHHh--cCCCCCCCHHHHHH
Confidence 999999999999877779999999999999 999999998766522111 0 1111110 12344669999999
Q ss_pred HHHhcCCccceEEEcC
Q 017835 340 LFFEAGFSDYKITDVL 355 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~ 355 (365)
+++++||+++++....
T Consensus 192 ~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEeCC
Confidence 9999999998887653
No 27
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.74 E-value=2.3e-17 Score=147.67 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=116.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceEEEecc-ccccCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADAVLIKC-VLHNWN 272 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~i~~~~-vlh~~~ 272 (365)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 3456899999999999999999884 58999999 889998876 5689999999988 444 599999998 999996
Q ss_pred h-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc------------ch--------hhhhhhhhhhhhc-----
Q 017835 273 D-EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK------------TT--------ETQLFMDMLMMVL----- 326 (365)
Q Consensus 273 ~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~------------~~--------~~~~~~d~~~~~~----- 326 (365)
+ ++...+|++++++|+| ||++++.+...+....... +. .....+++.+...
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 5 4667999999999999 8888886543333211000 00 0000001111000
Q ss_pred -------cCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 327 -------VKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 327 -------~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
...+.++.++|.++|+++||+++++........++.++
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~ 247 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGL 247 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEe
Confidence 01234589999999999999999987776665555554
No 28
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.74 E-value=4.8e-17 Score=144.82 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=117.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~- 257 (365)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 34455555 6778899999999999999999987 679999999 888888764 2589999999987 333
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++..++||+++. .++|++++++|+| ||++++.++......... . +.... ........++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQAC-GVSSTSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHTT-TCSCGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHHH-hcccccccCCHHHH
Confidence 59999999999999876 7889999999999 999999988765432211 0 11100 00112345699999
Q ss_pred HHHHHhcCCccceEEEc
Q 017835 338 AKLFFEAGFSDYKITDV 354 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~ 354 (365)
.++|+++||+++++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887654
No 29
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.73 E-value=5.6e-17 Score=147.75 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=114.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 5678899999999999999999986 569999999 888887764 3689999999988 554 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
++||+++. ..+|++++++|+| ||++++.++......... ....++... ......+.++|.++++++||
T Consensus 159 ~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~l~~aGf 226 (297)
T 2o57_A 159 AFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMGSLGLYRSLAKECGL 226 (297)
T ss_dssp CGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCCCHHHHHHHHHHTTE
T ss_pred hhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCCCHHHHHHHHHHCCC
Confidence 99999885 7899999999999 999999998765543211 111111111 11234589999999999999
Q ss_pred ccceEEEcC
Q 017835 347 SDYKITDVL 355 (365)
Q Consensus 347 ~~~~~~~~~ 355 (365)
+++++....
T Consensus 227 ~~~~~~~~~ 235 (297)
T 2o57_A 227 VTLRTFSRP 235 (297)
T ss_dssp EEEEEEECH
T ss_pred eEEEEEECc
Confidence 999887653
No 30
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.72 E-value=3.1e-17 Score=145.82 Aligned_cols=149 Identities=19% Similarity=0.286 Sum_probs=117.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D 260 (365)
.+++.++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||
T Consensus 84 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 3445554 5678899999999999999999886 557999999 888888875 2579999999987 444 499
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
+|++..++||+++++..++|++++++|+| ||++++.+......... .+. ......++.++|.++
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccce---------ecc----cCCcccCCHHHHHHH
Confidence 99999999999987889999999999999 99999998754332110 110 112334699999999
Q ss_pred HHhcCCccceEEEcCC
Q 017835 341 FFEAGFSDYKITDVLG 356 (365)
Q Consensus 341 l~~aGf~~~~~~~~~~ 356 (365)
|+++||+++++.....
T Consensus 225 l~~aGf~~~~~~~~~~ 240 (254)
T 1xtp_A 225 FNESGVRVVKEAFQEE 240 (254)
T ss_dssp HHHHTCCEEEEEECTT
T ss_pred HHHCCCEEEEeeecCC
Confidence 9999999998877643
No 31
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.72 E-value=5.9e-17 Score=145.99 Aligned_cols=152 Identities=20% Similarity=0.312 Sum_probs=115.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
+.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56789999999999999999999999999999999 888887764 3589999999987 444 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh--hhhccCccccCHHHHHHHHHhcC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML--MMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
+||+++. ..+|++++++|+| ||.+++.++........+........+... .....++..++..+|.++|+++|
T Consensus 115 l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 9999987 5899999999999 999999886543221111000111111111 11113455567789999999999
Q ss_pred CccceEEEc
Q 017835 346 FSDYKITDV 354 (365)
Q Consensus 346 f~~~~~~~~ 354 (365)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999888755
No 32
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.72 E-value=6.7e-17 Score=138.82 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=115.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEeccccccCChh
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~ 274 (365)
.+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||++.+
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 3789999999999999999988 569999999 888988876 6789999999987 443 59999999999999876
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
+...+|++++++|+| ||++++..+........ .. .......++.++|.++|+++||+++++...
T Consensus 119 ~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 182 (203)
T 3h2b_A 119 ELPDALVALRMAVED---GGGLLMSFFSGPSLEPM---------YH----PVATAYRWPLPELAQALETAGFQVTSSHWD 182 (203)
T ss_dssp THHHHHHHHHHTEEE---EEEEEEEEECCSSCEEE---------CC----SSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCC---CcEEEEEEccCCchhhh---------hc----hhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence 778999999999999 89999887654431110 00 011234468999999999999999999887
Q ss_pred CC-ceeEE
Q 017835 355 LG-VRSLI 361 (365)
Q Consensus 355 ~~-~~~vi 361 (365)
+. +...+
T Consensus 183 ~~~p~~~l 190 (203)
T 3h2b_A 183 PRFPHAYL 190 (203)
T ss_dssp TTSSEEEE
T ss_pred CCCcchhh
Confidence 55 34433
No 33
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.71 E-value=1.7e-16 Score=139.92 Aligned_cols=143 Identities=16% Similarity=0.187 Sum_probs=111.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceEEEecccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADAVLIKCVLHN 270 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~ 270 (365)
.+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++||
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 356789999999999999999988 679999999 888888875 4789999999988 554 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+++. ..+|++++++|+| ||++++.+.......... .+.. ..........++.+++.++++++||++++
T Consensus 129 ~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKS---DGYACIAILGPTAKPREN------SYPR-LYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG------GGGG-GGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh------hhhh-hccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 9876 6889999999999 899998886543322110 1111 11111234456999999999999999998
Q ss_pred EEEc
Q 017835 351 ITDV 354 (365)
Q Consensus 351 ~~~~ 354 (365)
+...
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8754
No 34
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.71 E-value=1.5e-16 Score=144.12 Aligned_cols=161 Identities=12% Similarity=0.152 Sum_probs=120.0
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..+++++.+|+.+-...|
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 34455555 67788999999999999999997764 59999999 888888764 358999999996522569
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccC----ccch-hhhhhhhhhhh-hccCccccC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKAD----YKTT-ETQLFMDMLMM-VLVKGEERN 333 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~----~~~~-~~~~~~d~~~~-~~~~~~~~t 333 (365)
|+|++..++||+++++...+|++++++|+| ||++++.+......... .+.. ......++... ...++..++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 999999999999766668999999999999 99999999876543210 0000 00011111111 123456679
Q ss_pred HHHHHHHHHhcCCccceEEEc
Q 017835 334 EKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.++|.++++++||+++++...
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCcEEEEEEeC
Confidence 999999999999999988765
No 35
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.71 E-value=1.2e-16 Score=140.93 Aligned_cols=151 Identities=19% Similarity=0.326 Sum_probs=116.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--P 258 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~ 258 (365)
.+++.+. ..++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .
T Consensus 12 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 12 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred hHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 3445555 67889999999999999999998864 8999999 888887764 3689999999987 554 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--hccCccccCHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--VLVKGEERNEKE 336 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~t~~e 336 (365)
||+|++..++||+++. ..+|++++++|+| ||++++.+...+.... ...+...... .....+.++.++
T Consensus 88 fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPV------LDEFVNHLNRLRDPSHVRESSLSE 156 (239)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred EEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCChh------HHHHHHHHHHhccccccCCCCHHH
Confidence 9999999999999876 6899999999999 9999999887654321 1111111111 012345679999
Q ss_pred HHHHHHhcCCccceEEEc
Q 017835 337 WAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~ 354 (365)
|.++|+++||+++++...
T Consensus 157 ~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 157 WQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCcEEEEEee
Confidence 999999999998877654
No 36
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.71 E-value=1.3e-16 Score=140.38 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=116.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceEEEe-ccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADAVLI-KCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~i~~-~~vlh~~~~ 273 (365)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 5678999999999999999999865 8999999 889888876 5689999999987 444 5999995 559999854
Q ss_pred -hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc------------hh--------hhhhhhhhhhhcc-C---
Q 017835 274 -EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT------------TE--------TQLFMDMLMMVLV-K--- 328 (365)
Q Consensus 274 -~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~------------~~--------~~~~~d~~~~~~~-~--- 328 (365)
++..++|++++++|+| ||++++.++..++....... .. ......+.+.... +
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 5678999999999999 89988876655433211000 00 0000011111000 1
Q ss_pred --------ccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 329 --------GEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 329 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.+.++.++|.++|+++||++..+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 1346999999999999998777766566677777764
No 37
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.70 E-value=3.5e-16 Score=143.60 Aligned_cols=154 Identities=11% Similarity=0.094 Sum_probs=117.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~- 257 (365)
..+++.++ ...++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 44555554 24677899999999999999999986 679999999 888888774 3589999999988 554
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||++ ..++|++++++|+| ||++++.++......... . .....+.-. .....++.++
T Consensus 184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~-~-~~~~~~~~~----~~~~~~s~~~ 251 (312)
T 3vc1_A 184 GAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP-S-KWVSQINAH----FECNIHSRRE 251 (312)
T ss_dssp TCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC-C-HHHHHHHHH----HTCCCCBHHH
T ss_pred CCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch-h-HHHHHHHhh----hcCCCCCHHH
Confidence 599999999999995 47899999999999 999999998776543211 0 111111111 1123568999
Q ss_pred HHHHHHhcCCccceEEEcC
Q 017835 337 WAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~ 355 (365)
|.++++++||+++++....
T Consensus 252 ~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 252 YLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHHHTTTEEEEEEEECH
T ss_pred HHHHHHHCCCEEEEEEeCC
Confidence 9999999999999887753
No 38
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.70 E-value=8.2e-17 Score=147.38 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=118.0
Q ss_pred ccCCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIA-KKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~ 266 (365)
+.++.+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999986 5688999999999 888888875 3459999999988 444 599999999
Q ss_pred ccccCChh-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc-cchh--h---h-hhhhhhhhhccC---ccccCHH
Q 017835 267 VLHNWNDE-ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY-KTTE--T---Q-LFMDMLMMVLVK---GEERNEK 335 (365)
Q Consensus 267 vlh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~-~~~~--~---~-~~~d~~~~~~~~---~~~~t~~ 335 (365)
++||++++ ...++|++++++|+| ||++++.+...+...... .+.. . . ............ ...++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 99999765 445799999999999 999999886654332110 0000 0 0 000000000011 1346999
Q ss_pred HHHHHHHhcCCccceEEEcCC-ceeEEEEe
Q 017835 336 EWAKLFFEAGFSDYKITDVLG-VRSLIEVY 364 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~ 364 (365)
+|.++|+++||+++++..... ....+.++
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~ 302 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIAR 302 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEE
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEe
Confidence 999999999999999987643 34444544
No 39
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.70 E-value=2.8e-16 Score=141.43 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=110.5
Q ss_pred CCCeEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC------------C--C
Q 017835 200 GLNTLVDVGGGT---GTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA------------I--P 257 (365)
Q Consensus 200 ~~~~iLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~------------~--~ 257 (365)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ ..+++++.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 458999999999 999888888899999999999 899998875 47899999999762 2 3
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.+|+|++..+|||+++++...+|++++++|+| ||+|++.+...+. .. ......+.+.........++.++|
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG--LP----AQQKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS--CH----HHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc--hH----HHHHHHHHHHhcCCCCccCCHHHH
Confidence 69999999999999987778999999999999 9999999876532 11 111122222221224566899999
Q ss_pred HHHHHhcCCccce
Q 017835 338 AKLFFEAGFSDYK 350 (365)
Q Consensus 338 ~~ll~~aGf~~~~ 350 (365)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998765
No 40
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.70 E-value=2.7e-16 Score=138.73 Aligned_cols=141 Identities=18% Similarity=0.283 Sum_probs=111.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCC--CceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh~~ 271 (365)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++||+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 467789999999999999999998 568999999 8888888744 8999999876 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
++++...+|++++++|+| ||++++..+...... . ..+.. ........++.++|.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~---~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTSLY------S---LINFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTSHH------H---HHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcchhH------H---HHHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988889999999999999 999998776432210 1 11111 1112345568999999999999999888
Q ss_pred EEcC
Q 017835 352 TDVL 355 (365)
Q Consensus 352 ~~~~ 355 (365)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
No 41
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.70 E-value=6.8e-17 Score=134.74 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=116.3
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCCC--CceEEEec
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAIP--PADAVLIK 265 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~~--~~D~i~~~ 265 (365)
+++.++ ..+..+|||||||+|.++..+++.+. +++++|. +.+++.+++ ..++++..+| .+++ .||+|++.
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 334444 56778999999999999999999873 9999999 888888876 6799999999 4333 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.++||+++. ..++++++++|+| ||++++.++.........+ ....++.++|.++++ |
T Consensus 83 ~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--G 139 (170)
T 3i9f_A 83 NSFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIGPP----------------LSIRMDEKDYMGWFS--N 139 (170)
T ss_dssp SCSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSSC----------------GGGCCCHHHHHHHTT--T
T ss_pred cchhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccCch----------------HhhhcCHHHHHHHHh--C
Confidence 999999876 6899999999999 9999999876654332210 012358999999999 9
Q ss_pred CccceEEEcCCceeEEEEe
Q 017835 346 FSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~~~~vi~~~ 364 (365)
|+++++.........+.++
T Consensus 140 f~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 140 FVVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEEEEECSSTTEEEEEEE
T ss_pred cEEEEccCCCCceEEEEEe
Confidence 9999999987665555543
No 42
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.70 E-value=2e-16 Score=144.57 Aligned_cols=163 Identities=13% Similarity=0.154 Sum_probs=123.0
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++.+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..+++++.+|+.+-...|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 34555565 67889999999999999999999976 89999999 888888774 348999999997653359
Q ss_pred eEEEeccccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch-----hhhhhhhhhhh-hc
Q 017835 260 DAVLIKCVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT-----ETQLFMDMLMM-VL 326 (365)
Q Consensus 260 D~i~~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~~-~~ 326 (365)
|+|++..++||+++ +....+|++++++|+| ||++++.+...+......... ....+.++... ..
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999954 5667999999999999 999999988776542110000 00001122111 12
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEcCC
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDVLG 356 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 356 (365)
.++..++.+++.++++++||+++++.....
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 355678999999999999999998877643
No 43
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.70 E-value=3.8e-16 Score=139.08 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=112.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..++.+|||||||+|.++..+++.++. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 466789999999999999999999875 9999999 888887764 3569999999977 544 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
++||++ . .++|++++++|+| ||++++.++......... . ....... ......+.++|.++++++||
T Consensus 123 ~l~~~~-~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNIG-F--ERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---E---IEDFWMD--AYPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCCC-H--HHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCCBHHHHHHHHHHTTE
T ss_pred hHhhcC-H--HHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence 999993 3 6789999999999 999999997654433221 1 1111111 11235689999999999999
Q ss_pred ccceEEEcC
Q 017835 347 SDYKITDVL 355 (365)
Q Consensus 347 ~~~~~~~~~ 355 (365)
+++.+...+
T Consensus 189 ~~v~~~~~~ 197 (257)
T 3f4k_A 189 TPTAHFILP 197 (257)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999987765
No 44
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.69 E-value=1.9e-16 Score=136.82 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=110.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC-CceEEEeccccccCChh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~~~ 274 (365)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.+ +.. .||+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999987 679999999 8888888864478888999877 422 59999999999999987
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC-CccceEEE
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG-FSDYKITD 353 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~ 353 (365)
+...+|++++++|+| ||++++........... . .. .....++.++|.++|+++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~----~----~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRD----K----LA------RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC----T----TS------CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc----c----cc------hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 889999999999999 89888875543322111 0 00 0123459999999999999 99998876
Q ss_pred c
Q 017835 354 V 354 (365)
Q Consensus 354 ~ 354 (365)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 5
No 45
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.69 E-value=2.3e-16 Score=138.71 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=108.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999876 5789999999 888888775 2469999999998433 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
++++....+|++++++|+| ||++++.+.........+ ...++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence 9977779999999999999 999998876544322111 1124889999999999999998
Q ss_pred EEEcCC
Q 017835 351 ITDVLG 356 (365)
Q Consensus 351 ~~~~~~ 356 (365)
+...+.
T Consensus 204 ~~~~~~ 209 (235)
T 3lcc_A 204 VEENPH 209 (235)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 887743
No 46
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.69 E-value=4e-16 Score=147.27 Aligned_cols=145 Identities=19% Similarity=0.296 Sum_probs=114.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhcccC--------------CCeEEEeCCCCC-------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKSN--------------GNLKYVGGNMFE------- 254 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~i~~~~~d~~~------- 254 (365)
..++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4567899999999999999999986 7889999999 8888888752 699999999987
Q ss_pred CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcccc
Q 017835 255 AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEER 332 (365)
Q Consensus 255 ~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 332 (365)
+++ .||+|++..++|++++. ..+|++++++|+| ||+|++.+.......... ............+..+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 229 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSEA------AQQDPILYGECLGGAL 229 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH------HHHCHHHHHTTCTTCC
T ss_pred CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCHh------HhhhHHHhhcccccCC
Confidence 444 49999999999999886 7899999999999 999999987765432210 0111111111234556
Q ss_pred CHHHHHHHHHhcCCccceEEE
Q 017835 333 NEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~ 353 (365)
+.++|.++|+++||+++++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 889999999999999876654
No 47
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.68 E-value=3.4e-16 Score=144.06 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=121.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 34555555 5678899999999999999999886 569999999 888888775 257999999986632469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc----cch-hhhhhhhhhhh-hccCccccC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY----KTT-ETQLFMDMLMM-VLVKGEERN 333 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~----~~~-~~~~~~d~~~~-~~~~~~~~t 333 (365)
|+|++..++||+++++..++|++++++|+| ||++++.++......... +.. ......++... ...++..++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 999999999999877778999999999999 999999998775532100 000 00001111111 113456679
Q ss_pred HHHHHHHHHhcCCccceEEEc
Q 017835 334 EKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.+++.++++++||+++++...
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 999999999999999988765
No 48
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.68 E-value=3.7e-16 Score=140.16 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=113.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 467889999999999999999998 7889999999 888888775 3679999999987 544 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
++||+ +. ..+|++++++|+| ||++++.+.......... . ..+.... .....++.+++.++++++||
T Consensus 123 ~~~~~-~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNI-GF--ERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWMD--AYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGT-CH--HHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCEEHHHHHHHHHHTTE
T ss_pred Cceec-CH--HHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence 99999 43 6789999999999 999999998764433221 1 1111111 11245689999999999999
Q ss_pred ccceEEEcC
Q 017835 347 SDYKITDVL 355 (365)
Q Consensus 347 ~~~~~~~~~ 355 (365)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999988765
No 49
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.68 E-value=2.2e-16 Score=139.39 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=112.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
+..+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998876 569999999 888888775 2358999999876 443 499999999999
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
|++++....+|++++++|+| ||++++.++...... .++. ......++.++|.++|+++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGV----------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSE----------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCcc----------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 99998778999999999999 999999998765411 0110 012234589999999999999999
Q ss_pred eEEEcCC
Q 017835 350 KITDVLG 356 (365)
Q Consensus 350 ~~~~~~~ 356 (365)
++....+
T Consensus 221 ~~~~~~~ 227 (241)
T 2ex4_A 221 AEERQEN 227 (241)
T ss_dssp EEEECCS
T ss_pred EeeecCC
Confidence 9887643
No 50
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.68 E-value=3.9e-16 Score=137.99 Aligned_cols=149 Identities=13% Similarity=0.168 Sum_probs=109.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCCCCC--CceEEEeccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFEAIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~~~~ 273 (365)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567999999999999999998865 7999999 888888875 2289999999987433 4999999999999988
Q ss_pred hHHHHHHHHHH-HhcccCCCCcEEEEEeeecCCCccCccc--hhhhhhhhhh--hhhccCccccCHHHHHHHHHhcCCcc
Q 017835 274 EECVKILKNCK-KAIAINGKAGKVIIIDIKMESEKADYKT--TETQLFMDML--MMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 274 ~~~~~~L~~i~-~~L~p~~~gG~lli~e~~~~~~~~~~~~--~~~~~~~d~~--~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
+ .++|++++ ++|+| ||++++.++........... ........+. .........++.++|.++|+++||++
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence 7 68999999 99999 99999987654321100000 0000000000 00112345679999999999999999
Q ss_pred ceEEEc
Q 017835 349 YKITDV 354 (365)
Q Consensus 349 ~~~~~~ 354 (365)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 888654
No 51
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.68 E-value=2.2e-16 Score=135.79 Aligned_cols=134 Identities=7% Similarity=0.003 Sum_probs=105.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCC-CC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFE-AI- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~- 256 (365)
..++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++|+.+ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 579999999 889988764 2579999999988 43
Q ss_pred --CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCH
Q 017835 257 --PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNE 334 (365)
Q Consensus 257 --~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~ 334 (365)
..||+|++..++|++++++..+++++++++||| ||+++++....+..... ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 359999999999999988778899999999999 89866555433221000 00112488
Q ss_pred HHHHHHHHhcCCccceEEEc
Q 017835 335 KEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 335 ~e~~~ll~~aGf~~~~~~~~ 354 (365)
+++.+++++ ||+++.+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998777655
No 52
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.68 E-value=2.6e-16 Score=143.58 Aligned_cols=169 Identities=12% Similarity=0.192 Sum_probs=117.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---C------CCeEEEeCCCCC-CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---N------GNLKYVGGNMFE-AI 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~i~~~~~d~~~-~~ 256 (365)
..+++.++ ....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34444444 33459999999999999999987 578999999 888888875 1 689999999998 54
Q ss_pred C-CceEEEec-cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc-----cch-hhhh-----------
Q 017835 257 P-PADAVLIK-CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY-----KTT-ETQL----------- 317 (365)
Q Consensus 257 ~-~~D~i~~~-~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~-----~~~-~~~~----------- 317 (365)
+ .||+|++. .++|++++++..++|++++++|+| ||+|++..+..+...... .+. ....
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 5 59988865 778888877889999999999999 898888766543221000 000 0000
Q ss_pred --hhhhhhh-----------hccCccccCHHHHHHHHHhcCCccceEEEcCCc------eeEEEEe
Q 017835 318 --FMDMLMM-----------VLVKGEERNEKEWAKLFFEAGFSDYKITDVLGV------RSLIEVY 364 (365)
Q Consensus 318 --~~d~~~~-----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~------~~vi~~~ 364 (365)
...+... .....+.++.++|.++|+++||+++++.+.... ..++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0000000 001122459999999999999999999888522 4566664
No 53
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.67 E-value=5.5e-16 Score=137.79 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=111.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceEE
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADAV 262 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~i 262 (365)
+.+.++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 36 l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 36 LKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 344444 456789999999999999999998654 9999999 888888875 4789999999987 554 59999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC------------CCccCccchhhhhhhhhhh-----hh
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME------------SEKADYKTTETQLFMDMLM-----MV 325 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~------------~~~~~~~~~~~~~~~d~~~-----~~ 325 (365)
++..++||+++. .++|++++++|+| ||++++...... .......+ ....+++-.. ..
T Consensus 113 ~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (253)
T 3g5l_A 113 LSSLALHYIASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFLG 186 (253)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEETT
T ss_pred EEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeecc
Confidence 999999999775 7899999999999 899888643321 00000000 0000000000 00
Q ss_pred -ccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 326 -LVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 326 -~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
......++.++|.++|+++||+++++...
T Consensus 187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 187 EDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 00112249999999999999999988755
No 54
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.67 E-value=6.9e-16 Score=139.31 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=115.5
Q ss_pred chHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceE
Q 017835 186 TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADA 261 (365)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~ 261 (365)
....+++.+. ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+
T Consensus 45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 120 (279)
T 3ccf_A 45 YGEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDA 120 (279)
T ss_dssp SCCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEE
T ss_pred HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCE
Confidence 3345566665 56778999999999999999998 6889999999 888888875 5789999999987 444 5999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-------hccCccccCH
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-------VLVKGEERNE 334 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~~t~ 334 (365)
|++..++||+++. ..+|++++++|+| ||++++..+....... ....+...... .......++.
T Consensus 121 v~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (279)
T 3ccf_A 121 VFSNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFGGKGNIKY-----ILEALYNALETLGIHNPQALNPWYFPSI 190 (279)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECTTTTHH-----HHHHHHHHHHHHTCCCGGGGCCCCCCCH
T ss_pred EEEcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEecCCcchHH-----HHHHHHHHHHhcCCccccCcCceeCCCH
Confidence 9999999999876 6899999999999 8998887654322110 01111111000 0011234589
Q ss_pred HHHHHHHHhcCCccceEEEc
Q 017835 335 KEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 335 ~e~~~ll~~aGf~~~~~~~~ 354 (365)
++|.++|+++||+++++...
T Consensus 191 ~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 191 GEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEEe
Confidence 99999999999998877654
No 55
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.67 E-value=4.1e-16 Score=141.24 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=111.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~vl 268 (365)
..+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 467789999999999999999999984 89999999 888887764 3489999999988 444 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC-----C---CccCccchhhhhhhhhhhhh--ccCccccCHHHHH
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME-----S---EKADYKTTETQLFMDMLMMV--LVKGEERNEKEWA 338 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~-----~---~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~e~~ 338 (365)
||+++. .++|++++++|+| ||++++.++... - +...+.......+..+.... ..+....+..++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCH--HHHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 999887 6899999999999 999999987621 0 00000000011111111110 1233344667899
Q ss_pred HHHHhcCCccceEEEc
Q 017835 339 KLFFEAGFSDYKITDV 354 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~ 354 (365)
++|+++||+.+++...
T Consensus 175 ~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 175 IYLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHHTTCEEEEEEEC
T ss_pred HHHHHcCCCeEEEEEc
Confidence 9999999998877443
No 56
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.66 E-value=1.3e-15 Score=133.37 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=111.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCC-CCC--CceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFE-AIP--PADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~-~~~--~~D~i 262 (365)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 356789999999999999999988 679999999 888888774 1268999999987 544 49999
Q ss_pred EeccccccCChh-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh---------------c
Q 017835 263 LIKCVLHNWNDE-ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV---------------L 326 (365)
Q Consensus 263 ~~~~vlh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---------------~ 326 (365)
++..++||++++ ...++|++++++|+| ||++++.++........ + .......+.... .
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcc
Confidence 999999999765 456899999999999 99999998765432211 0 000000110000 0
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.....++.++|.++|+++||+++++...
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 0123569999999999999999887654
No 57
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=6.3e-16 Score=137.74 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=111.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceEEEe
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADAVLI 264 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~i~~ 264 (365)
.+++.++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++
T Consensus 24 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 4455555 56778999999999999999999999999999999 888888876 5789999999987 422 4999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--h--ccCccccCHHHHHHH
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--V--LVKGEERNEKEWAKL 340 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~--~~~~~~~t~~e~~~l 340 (365)
..++||+++. ..+|++++++|+| ||++++..+..........+........+... . ......++.++|.++
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 9999999775 6899999999999 89999987643221100000000000000000 0 012345699999999
Q ss_pred HHhcCCccc
Q 017835 341 FFEAGFSDY 349 (365)
Q Consensus 341 l~~aGf~~~ 349 (365)
|+++||++.
T Consensus 177 l~~aGf~v~ 185 (259)
T 2p35_A 177 LSPKSSRVD 185 (259)
T ss_dssp HGGGEEEEE
T ss_pred HHhcCCceE
Confidence 999999743
No 58
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.66 E-value=9.1e-16 Score=133.35 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=103.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-----------CCeEEEeCCCCC-CC--CCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-----------GNLKYVGGNMFE-AI--PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~~~-~~--~~~D~i 262 (365)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 45678999999999999999999988899999999 8888888751 289999999966 33 259999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH----
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA---- 338 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~---- 338 (365)
++..++||+++++..++|++++++|+| ||.+++. +......... . ..............++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~-~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVST-PNKEYNFHYG---N---LFEGNLRHRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEE-EBGGGGGCCC---C---T-----GGGCCTTSBCHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEc-cchhhhhhhc---c---cCcccccccCceeeecHHHHHHHHH
Confidence 999999999998888999999999999 8854443 3221111000 0 000000001122335888888
Q ss_pred HHHHhcCCccce
Q 017835 339 KLFFEAGFSDYK 350 (365)
Q Consensus 339 ~ll~~aGf~~~~ 350 (365)
++++++||++.-
T Consensus 177 ~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 177 KVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHTEEEEE
T ss_pred HHHHHCCcEEEE
Confidence 888899997643
No 59
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=1.4e-15 Score=135.87 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=114.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVL 263 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~ 263 (365)
..+.+.++ ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++++.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34445555 56789999999999999999997 6789999999 8899988876699999999987 554 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE 343 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 343 (365)
+.+++||+++. .++|++++++|+ ||++++.++..+..... + ....+.. .........++.+++. +|++
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRI--W--LYDYFPF-LWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCC--G--GGGTCHH-HHHHHHTSCCHHHHHH-HHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHH--H--HHHHHHH-HhhhhhhhCCCHHHHH-HHHH
Confidence 99999999776 789999999998 59999998754332211 1 0001100 0001123445778888 9999
Q ss_pred cCCccceEEEcC
Q 017835 344 AGFSDYKITDVL 355 (365)
Q Consensus 344 aGf~~~~~~~~~ 355 (365)
+||+++++...+
T Consensus 168 aGF~~v~~~~~~ 179 (261)
T 3ege_A 168 NTKRRVEAIPFL 179 (261)
T ss_dssp HHCSEEEEEECC
T ss_pred cCCCceeEEEec
Confidence 999988887663
No 60
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.65 E-value=7.9e-16 Score=133.58 Aligned_cols=143 Identities=11% Similarity=-0.012 Sum_probs=103.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-----------CCeEEEeCCCCC-CC--CCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-----------GNLKYVGGNMFE-AI--PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~~~-~~--~~~D~i 262 (365)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 45678999999999999999999988899999999 8888888751 289999999866 33 259999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH----
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA---- 338 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~---- 338 (365)
++..++||++++...++|++++++|+| ||.+++........... ...............++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPNIEYNVKFA-------NLPAGKLRHKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBHHHHHHTC------------------CCSCBCHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccCcccchhhc-------ccccccccccccccccCHHHHHHHHH
Confidence 999999999998889999999999999 88555544311000000 0000000001122345888888
Q ss_pred HHHHhcCCccce
Q 017835 339 KLFFEAGFSDYK 350 (365)
Q Consensus 339 ~ll~~aGf~~~~ 350 (365)
++++++||++..
T Consensus 177 ~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 177 KITERFAYNVQF 188 (217)
T ss_dssp HHHHHSSEEEEE
T ss_pred HHHHHcCceEEE
Confidence 888999998643
No 61
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=143.09 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=105.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-----------------------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN----------------------------------- 242 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 242 (365)
.++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 4678999999999999999999999999999999 8888887641
Q ss_pred -----------------------------CCeEEEeCCCCCCC--------CCceEEEeccccccC----ChhHHHHHHH
Q 017835 243 -----------------------------GNLKYVGGNMFEAI--------PPADAVLIKCVLHNW----NDEECVKILK 281 (365)
Q Consensus 243 -----------------------------~~i~~~~~d~~~~~--------~~~D~i~~~~vlh~~----~~~~~~~~L~ 281 (365)
.+|+++.+|+.... ..||+|++..+++++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998632 259999999999665 6777889999
Q ss_pred HHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh--cCCccceEEEc
Q 017835 282 NCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE--AGFSDYKITDV 354 (365)
Q Consensus 282 ~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 354 (365)
+++++|+| ||+|++....+......... ....... ........+++.++|.+ +||+.+++...
T Consensus 205 ~~~~~Lkp---GG~lil~~~~~~~y~~~~~~--~~~~~~~-----~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRP---GGILVLEPQPWSSYGKRKTL--TETIYKN-----YYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEE---EEEEEEECCCHHHHHTTTTS--CHHHHHH-----HHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCC---CcEEEEecCCchhhhhhhcc--cHHHHhh-----hhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999 88777753322111000000 0000100 11222357899999999 99988777654
No 62
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.65 E-value=3.8e-15 Score=140.01 Aligned_cols=215 Identities=7% Similarity=0.009 Sum_probs=138.3
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch-hhhcCCCCChHHH
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK-LLLKDHPLSLAPF 121 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~ 121 (365)
++|..| . +|.|++|||+++++ +++.+++||+.|.+.|+++.. ++ |++++.+. ++...+.....+.
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~-------~~-~~lt~~~~~~l~~~~~~~~~~~ 112 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE-------DG-VKLTEKGEELVAEYGIGKRYDF 112 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS-------SS-SEECHHHHHHHHHHTCCCCCC-
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC-------CC-EEECHHHHHHHHhcCccccccc
Confidence 678888 4 68999999999999 579999999999999999875 35 99998766 4443221111111
Q ss_pred HHHc-cC-ccccc----chhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcc
Q 017835 122 LLAM-LD-PILTK----PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCK 195 (365)
Q Consensus 122 ~~~~-~~-~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~ 195 (365)
+... .+ ...+. .|..+.+.++... .+. ..+...+ ..++. ...+.+ .. ....
T Consensus 113 ~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~-----~~~-~~~~~~~-----~~~~~--~~~~~l---------~~-~~~~ 169 (373)
T 2qm3_A 113 TCPHCQGKTVDLQAFADLLEQFREIVKDRP-----EPL-HEFDQAY-----VTPET--TVARVI---------LM-HTRG 169 (373)
T ss_dssp -----------CGGGHHHHHHHHHHHTTCC-----CCC-GGGTCCC-----BCHHH--HHHHHH---------HH-HHTT
T ss_pred cchhhcCCCcchhhhHHHHHHHHHHHhcCC-----ccc-hhcCCee-----cCHHH--HHHHHH---------HH-hhcC
Confidence 1000 00 00111 2334444454332 110 0011000 01111 000000 00 0111
Q ss_pred ccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-----CceEEE
Q 017835 196 DVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-----PADAVL 263 (365)
Q Consensus 196 ~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-----~~D~i~ 263 (365)
..++.+|||+| |+|.++..++...|..+++++|+ +.+++.+++ ..+++++.+|+.+++| .||+|+
T Consensus 170 --~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 170 --DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp --CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred --CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEE
Confidence 23568999999 99999999999988889999999 899988875 2389999999988433 499999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+...++... ...+++++.++|+| ||++++++...
T Consensus 247 ~~~p~~~~~---~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 247 TDPPETLEA---IRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp ECCCSSHHH---HHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred ECCCCchHH---HHHHHHHHHHHccc---CCeEEEEEEec
Confidence 987766442 47899999999999 89776666543
No 63
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.64 E-value=3.7e-15 Score=131.35 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=110.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceE
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADA 261 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~ 261 (365)
.+...++ ..++.+|||||||+|.++..+++... .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 3444454 45678999999999999999998732 38999999 888888875 3479999999987 444 4999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCcc-Cccch---------hhhhhhh-----hhhhh-
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA-DYKTT---------ETQLFMD-----MLMMV- 325 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~-~~~~~---------~~~~~~d-----~~~~~- 325 (365)
|++..++||+++. ..+|++++++|+| ||++++..+....... ...+. ....++. .....
T Consensus 111 v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (243)
T 3bkw_A 111 AYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK 185 (243)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred EEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence 9999999999865 6899999999999 8999887643210000 00000 0000000 00000
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
......++.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 186 GVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp SCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 01122358999999999999999988764
No 64
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.64 E-value=8.5e-16 Score=139.10 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=110.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C-CC--CceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A-IP--PADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~~--~~D~i~~~~v 267 (365)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999988 679999999 888888875 2689999999987 3 33 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--------hccCccccCHHHHHH
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--------VLVKGEERNEKEWAK 339 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~~~~t~~e~~~ 339 (365)
+||+++. ..+|++++++|+| ||++++..+......... .....+..... .......++.++|.+
T Consensus 146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL 217 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence 9999887 6899999999999 899998876442211000 00000000000 001234569999999
Q ss_pred HHHhcCCccceEEEcCC
Q 017835 340 LFFEAGFSDYKITDVLG 356 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~~ 356 (365)
+|+++||+++++.....
T Consensus 218 ~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 218 WLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp HHHHTTCEEEEEEEESS
T ss_pred HHHHCCCceeeeeeEEE
Confidence 99999999998887643
No 65
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.64 E-value=4.7e-15 Score=126.54 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=111.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-Cc
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-~~ 259 (365)
.+.+.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .|
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 4455555 456679999999999999999987 679999999 888888764 2479999999987 444 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||+++++..++|++++++|+| ||.+++++.......... ......++.+++.+
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHH
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHH
Confidence 999999999999977778999999999999 999999887665432210 01123358889999
Q ss_pred HHHhcCCccceEEEc
Q 017835 340 LFFEAGFSDYKITDV 354 (365)
Q Consensus 340 ll~~aGf~~~~~~~~ 354 (365)
+|++ |++++....
T Consensus 161 ~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 161 YYEG--WERVKYNED 173 (199)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CeEEEeccc
Confidence 9987 988877544
No 66
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.64 E-value=2.9e-15 Score=132.12 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=105.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecc-cccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKC-VLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~-vlh~ 270 (365)
+..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 6789999999999999999988 568999999 888888775 2289999999987 444 599999998 9999
Q ss_pred CCh-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCcc---Cccch---------hh------hhhhhhhhhhc-----
Q 017835 271 WND-EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA---DYKTT---------ET------QLFMDMLMMVL----- 326 (365)
Q Consensus 271 ~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~---~~~~~---------~~------~~~~d~~~~~~----- 326 (365)
+++ ++..++|++++++|+| ||.+++..+....... ...+. .. .....+.+...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY 191 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence 943 5678999999999999 8888763322110000 00000 00 00000000000
Q ss_pred ------cCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 327 ------VKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 327 ------~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
...+.++.++|.++|+++||++++++..
T Consensus 192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 0124569999999999999999998765
No 67
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.63 E-value=1.7e-15 Score=131.92 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=111.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-----C-CC-ce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-----I-PP-AD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-----~-~~-~D 260 (365)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. . .. ||
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3444454 456699999999999999999988 679999999 88999988778888888887651 1 23 99
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh------ccCccccCH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV------LVKGEERNE 334 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~t~ 334 (365)
+|++..++| ..+. ..+|++++++|+| ||++++.++......... +.. .+....... ......++.
T Consensus 119 ~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3e8s_A 119 LICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQD--GWREESFAGFAGDWQPMPWYFRTL 189 (227)
T ss_dssp EEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CSC--EEEEECCTTSSSCCCCEEEEECCH
T ss_pred EEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-ccc--ccchhhhhccccCcccceEEEecH
Confidence 999999999 5555 6899999999999 899999887553322110 000 000000000 011234599
Q ss_pred HHHHHHHHhcCCccceEEEc
Q 017835 335 KEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 335 ~e~~~ll~~aGf~~~~~~~~ 354 (365)
++|.++|+++||+++++...
T Consensus 190 ~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 190 ASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp HHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHcCCeEEEEecC
Confidence 99999999999999988763
No 68
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.63 E-value=3e-15 Score=134.65 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=113.5
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH------HHHhccc-------CCCeEEEeCC-C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PH------VVADLKS-------NGNLKYVGGN-M 252 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~-------~~~i~~~~~d-~ 252 (365)
.+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ ..+++++.+| +
T Consensus 34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 4555555 6778999999999999999999995 7789999999 44 7777664 2589999998 4
Q ss_pred CC---CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhh-hhhhhhhh--h
Q 017835 253 FE---AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTET-QLFMDMLM--M 324 (365)
Q Consensus 253 ~~---~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~d~~~--~ 324 (365)
.. +++ .||+|++..++||++++. .+++.++++++| ||++++.+...+...... .... ........ .
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAI 185 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhc
Confidence 43 333 499999999999999874 477777788888 999999998876543211 0000 00000000 0
Q ss_pred --h--ccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 325 --V--LVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 325 --~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
. ......++.++|.++++++||+++++...
T Consensus 186 ~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 186 APSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp SCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 0 01123569999999999999999887765
No 69
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.62 E-value=5.8e-15 Score=130.12 Aligned_cols=95 Identities=24% Similarity=0.419 Sum_probs=80.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecc-cc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKC-VL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~-vl 268 (365)
+.+..+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 345689999999999999998876 79999999 888888775 3579999999987 444 599999986 99
Q ss_pred ccC-ChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 269 HNW-NDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 269 h~~-~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
||+ +.++..++|++++++|+| ||++++
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~ 135 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTD---GGKLLF 135 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence 998 456678999999999999 888876
No 70
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.61 E-value=8.3e-15 Score=127.76 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=111.1
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCC--Cce
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PAD 260 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D 260 (365)
...+++.++ .+..+|||||||+|.++..+++. + .+++++|. +.+++.+++ ...+++.+|+.+ +++ .||
T Consensus 22 ~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 22 NPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKE-KLDHVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp CHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHT-TSSEEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHH-hCCcEEEcchhhcCCCCCCCccC
Confidence 344555443 56789999999999999999988 4 89999999 888888874 234788899875 333 499
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhh---hhhhccCccccCHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDM---LMMVLVKGEERNEKEW 337 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~t~~e~ 337 (365)
+|++..++||++++ ..+|++++++|+| ||.+++..+........ .......+.. ..........++.++|
T Consensus 96 ~v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (230)
T 3cc8_A 96 CVIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPNVSHISVL--APLLAGNWTYTEYGLLDKTHIRFFTFNEM 168 (230)
T ss_dssp EEEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEECTTSHHHH--HHHHTTCCCCBSSSTTBTTCCCCCCHHHH
T ss_pred EEEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCCcchHHHH--HHHhcCCceeccCCCCCcceEEEecHHHH
Confidence 99999999999887 6899999999999 89999877654221100 0000000000 0000112245699999
Q ss_pred HHHHHhcCCccceEEEcC
Q 017835 338 AKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~~ 355 (365)
.++++++||+++++....
T Consensus 169 ~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 169 LRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHcCCeEEEEEecc
Confidence 999999999999887753
No 71
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.61 E-value=4.6e-14 Score=119.65 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=106.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEec-cccccC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIK-CVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~-~vlh~~ 271 (365)
.++..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. .++|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 357789999999999999999987 579999999 888888876 5679999999987 554 49999998 899999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
+++....+|++++++|+| ||.+++..... ..++.+++.++++++||+++++
T Consensus 122 ~~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 122 AEDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHHHHHTEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHHHHcCCEEeee
Confidence 888889999999999999 88888754311 1147889999999999999887
Q ss_pred EEc
Q 017835 352 TDV 354 (365)
Q Consensus 352 ~~~ 354 (365)
...
T Consensus 173 ~~~ 175 (195)
T 3cgg_A 173 FES 175 (195)
T ss_dssp ESS
T ss_pred ecc
Confidence 654
No 72
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.60 E-value=3e-15 Score=132.38 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=109.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC-------CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP-------PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~-------~~D~i~~~ 265 (365)
..+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 46678999999999999999999977 8999999 888888875 4589999999988 222 38999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhh----hhhhhhhhhhccCccccCHHHHHHHH
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTET----QLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~----~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
.++||+++++..++|++++++|+| ||+++++++..++.......... .......+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999987789999999999999 99999999865532110000000 00000000000111235899999999
Q ss_pred HhcCCccceEEEc
Q 017835 342 FEAGFSDYKITDV 354 (365)
Q Consensus 342 ~~aGf~~~~~~~~ 354 (365)
+||++++....
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99998775443
No 73
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.60 E-value=7.3e-15 Score=131.03 Aligned_cols=145 Identities=13% Similarity=0.146 Sum_probs=105.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 467789999999999999999987 579999999 888888764 3689999999977 544 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc----CccccCHHHHHHHHHhc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV----KGEERNEKEWAKLFFEA 344 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~t~~e~~~ll~~a 344 (365)
|++++. ..+|++++++|+| ||.+++. ...++ ..........+..+...... ....++.+++.++|+++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 999875 6899999999999 8988887 22211 01000000111111111000 12345889999999999
Q ss_pred CCccceEE
Q 017835 345 GFSDYKIT 352 (365)
Q Consensus 345 Gf~~~~~~ 352 (365)
||+++.+.
T Consensus 187 Gf~~~~~~ 194 (263)
T 2yqz_A 187 GLKPRTRE 194 (263)
T ss_dssp TCCCEEEE
T ss_pred CCCcceEE
Confidence 99977653
No 74
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.60 E-value=1.2e-14 Score=126.32 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=103.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChhH
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEE 275 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~ 275 (365)
++.+|||||||+|.++..++.. +++|. +.+++.+++. +++++.+|+.+ +.+ .||+|++..++||+++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 3789999999999999888654 89999 8888888765 89999999877 444 49999999999999876
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--hccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 276 CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--VLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 276 ~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
.++|++++++|+| ||.+++.++...... ...+...... .......++.++|.++|+++||+++++..
T Consensus 119 -~~~l~~~~~~L~p---gG~l~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 119 -ERALKEAYRILKK---GGYLIVGIVDRESFL-------GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp -HHHHHHHHHHEEE---EEEEEEEEECSSSHH-------HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -HHHHHHHHHHcCC---CcEEEEEEeCCccHH-------HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 6899999999999 899998876432210 0001110000 01123456999999999999999988876
Q ss_pred c
Q 017835 354 V 354 (365)
Q Consensus 354 ~ 354 (365)
.
T Consensus 188 ~ 188 (219)
T 1vlm_A 188 T 188 (219)
T ss_dssp E
T ss_pred c
Confidence 5
No 75
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.59 E-value=1.2e-14 Score=128.98 Aligned_cols=133 Identities=10% Similarity=-0.006 Sum_probs=105.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------------------CCCeEEEeCCCCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------------------NGNLKYVGGNMFE 254 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~~ 254 (365)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999987 679999999 888888753 1579999999998
Q ss_pred -CC---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcc
Q 017835 255 -AI---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGE 330 (365)
Q Consensus 255 -~~---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 330 (365)
+. ..||+|++..++|++++++...++++++++|+| ||+++++....+..... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 43 359999999999999988888999999999999 89987766554321100 0001
Q ss_pred ccCHHHHHHHHHhcCCccceEEEc
Q 017835 331 ERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 331 ~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..+.+++.++|+. +|+++.+...
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2488999999987 5988776543
No 76
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.59 E-value=1.1e-14 Score=132.32 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=97.2
Q ss_pred cCCCeEEEecCCccHHHH----HHHHHCCCCeE--EEeec-hHHHHhccc-------CCCeEE--EeCCCCC-C------
Q 017835 199 EGLNTLVDVGGGTGTLAS----AIAKKFPHIEC--TVFDQ-PHVVADLKS-------NGNLKY--VGGNMFE-A------ 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~-------~~~i~~--~~~d~~~-~------ 255 (365)
.++.+|||||||+|.++. .++..+|+.++ +++|. +.|++.+++ ..++.+ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 456799999999997654 44556788854 99999 888887764 134544 4555432 1
Q ss_pred CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc--cCccc
Q 017835 256 IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL--VKGEE 331 (365)
Q Consensus 256 ~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~ 331 (365)
++ .||+|++.+++||+++. .+.|++++++||| ||++++.+..... . +. ..+........ .....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~-~----~~--~~~~~~~~~~~~~~~~~~ 198 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGSS-G----WD--KLWKKYGSRFPQDDLCQY 198 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTTS-H----HH--HHHHHHGGGSCCCTTCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC---CcEEEEEEecCCc-c----HH--HHHHHHHHhccCCCcccC
Confidence 22 49999999999999987 6789999999999 9999998653211 1 10 01111110000 01245
Q ss_pred cCHHHHHHHHHhcCCccceE
Q 017835 332 RNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~~~ 351 (365)
++.++|.++|+++||+++..
T Consensus 199 ~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 199 ITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CCHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHCCCceEEE
Confidence 68999999999999997763
No 77
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.57 E-value=1.5e-14 Score=124.51 Aligned_cols=150 Identities=12% Similarity=0.014 Sum_probs=107.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
..+..+|||||||+|..+..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 356789999999999985555444 4679999999 888888764 4679999999987 554 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh-hhccCccccCHHHHHHHHHhcCCc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM-MVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
||++.++..+++++++++|+| ||++++.+...++.............+.... .....+..++.+++.++|++.||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 999877789999999999999 8999998887654321100000000010000 000123456999999999999987
Q ss_pred cceE
Q 017835 348 DYKI 351 (365)
Q Consensus 348 ~~~~ 351 (365)
..+.
T Consensus 177 ~~~~ 180 (209)
T 2p8j_A 177 FKED 180 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5544
No 78
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.56 E-value=4.8e-14 Score=122.04 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=100.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEec
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIK 265 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~ 265 (365)
.++..+.. ..+..+|||||||+|.++..+. .+++++|+.+. +++++.+|+.+ +++ .||+|++.
T Consensus 57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 34444431 3567899999999999988772 68999998332 67888999887 554 49999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.++|+ .+. ..+|++++++|+| ||.+++.+... ...+.++|.++++++|
T Consensus 123 ~~l~~-~~~--~~~l~~~~~~L~~---gG~l~i~~~~~--------------------------~~~~~~~~~~~l~~~G 170 (215)
T 2zfu_A 123 LSLMG-TNI--RDFLEEANRVLKP---GGLLKVAEVSS--------------------------RFEDVRTFLRAVTKLG 170 (215)
T ss_dssp SCCCS-SCH--HHHHHHHHHHEEE---EEEEEEEECGG--------------------------GCSCHHHHHHHHHHTT
T ss_pred hhccc-cCH--HHHHHHHHHhCCC---CeEEEEEEcCC--------------------------CCCCHHHHHHHHHHCC
Confidence 99984 444 7899999999999 99999987421 0117899999999999
Q ss_pred CccceEEEcCCceeEEEEeC
Q 017835 346 FSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 346 f~~~~~~~~~~~~~vi~~~~ 365 (365)
|+++++....+...++.++|
T Consensus 171 f~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 171 FKIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEEECCSTTCEEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEEe
Confidence 99988766666666666653
No 79
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.8e-14 Score=128.46 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=85.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCC-C--C------CCc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE-A--I------PPA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~--~------~~~ 259 (365)
.+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ + . ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578999999999999999999987 8999999999 888888864 4699999999987 3 2 259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+|++..++||+ +. ..+|++++++|+| ||.|++.+..
T Consensus 115 D~V~~~~~l~~~-~~--~~~l~~~~~~Lkp---gG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-DF--EKFQRSAYANLRK---DGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-CH--HHHHHHHHHHEEE---EEEEEEEEEE
T ss_pred eEEeHhhHHHHh-CH--HHHHHHHHHhcCC---CcEEEEEecC
Confidence 999999999999 44 7899999999999 9999885543
No 80
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.56 E-value=2.3e-14 Score=127.45 Aligned_cols=98 Identities=11% Similarity=0.204 Sum_probs=85.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~ 274 (365)
....+|||||||+|.++..|++.+ .+++++|+ +.+++.+++..+++++.+|+.+ +++ .||+|++..++|+++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~- 114 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL- 114 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH-
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH-
Confidence 445799999999999999999875 58999999 8999999888899999999987 665 4999999999987764
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.+++++++++||| ||+|+++.....
T Consensus 115 --~~~~~e~~rvLkp---gG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 --DRFWAELRRVARP---GAVFAAVTYGLT 139 (257)
T ss_dssp --HHHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred --HHHHHHHHHHcCC---CCEEEEEECCCC
Confidence 4689999999999 999999876543
No 81
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.55 E-value=2.1e-15 Score=135.06 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=100.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc---C------------------------------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS---N------------------------------ 242 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---~------------------------------ 242 (365)
..++.+|||||||+|.++..++.. +. +++++|+ +.+++.+++ .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 346789999999999887655544 33 6999999 888887653 0
Q ss_pred --CCeE-EEeCCCCCC-------CCCceEEEeccccccCC--hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc
Q 017835 243 --GNLK-YVGGNMFEA-------IPPADAVLIKCVLHNWN--DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY 310 (365)
Q Consensus 243 --~~i~-~~~~d~~~~-------~~~~D~i~~~~vlh~~~--~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~ 310 (365)
.++. ++.+|+.+. .+.||+|+++.+|||.. .++..++|++++++||| ||++++.+........
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~~~-- 205 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYM-- 205 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEE--
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCccce--
Confidence 1233 889999872 23599999999999853 35567899999999999 9999998654221100
Q ss_pred cchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 311 KTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 311 ~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..- .......++.++|.++|+++||+++++...
T Consensus 206 --------~g~---~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 206 --------VGK---REFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp --------ETT---EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --------eCC---eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 000 001122358999999999999999888764
No 82
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.55 E-value=7.5e-14 Score=126.30 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=109.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~ 259 (365)
..+++.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 44555555 457889999999999999999988 569999999 888887775 2389999999987 334 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||++++....+|++++++|+| ||.++++..........+ ......++.+++.+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE 247 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence 999999999999998889999999999999 899888776554432210 00122347788888
Q ss_pred HHHhcCCccceEE
Q 017835 340 LFFEAGFSDYKIT 352 (365)
Q Consensus 340 ll~~aGf~~~~~~ 352 (365)
+++. |+++...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 8865 8877664
No 83
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.55 E-value=1e-14 Score=132.40 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=88.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE-A 255 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~-~ 255 (365)
..+...++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.+..+|+.+ +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 33444444 456789999999999999999998 459999999 888888753 2578889999877 4
Q ss_pred ---CC--CceEEEec-cccccCCh-----hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 256 ---IP--PADAVLIK-CVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 256 ---~~--~~D~i~~~-~vlh~~~~-----~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
++ .||+|++. +++||+++ ++..++|++++++|+| ||++++..+.
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 177 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN 177 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 34 59999998 99999988 6678999999999999 8998887643
No 84
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.55 E-value=1.7e-14 Score=128.84 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=104.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CC-------------------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NG------------------------------- 243 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~------------------------------- 243 (365)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999998888755 58999999 888888764 22
Q ss_pred -Ce-EEEeCCCCCC-C------CCceEEEeccccccCCh--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc
Q 017835 244 -NL-KYVGGNMFEA-I------PPADAVLIKCVLHNWND--EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312 (365)
Q Consensus 244 -~i-~~~~~d~~~~-~------~~~D~i~~~~vlh~~~~--~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 312 (365)
++ +++.+|+.+. . ..||+|++..++|+++. ++...+|++++++|+| ||++++.+...... +
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~-----~ 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSSY-----Y 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-----E
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCce-----E
Confidence 17 8999999872 1 24999999999995543 2558899999999999 89999888533210 0
Q ss_pred hhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 313 TETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 313 ~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
... + ........+.++|.++|+++||+++++...+
T Consensus 206 ~~~----~----~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 MIG----E----QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp EET----T----EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EcC----C----ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000 0 0011234588999999999999999887664
No 85
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.54 E-value=5.5e-14 Score=120.77 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=107.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh 269 (365)
..++.+|||||||+|.++..+++ .+..+++++|. +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 35678999999999999999876 46679999999 888888774 2349999999988544 599999988776
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
+ ...++++++++|+| ||++++.+.... +.+++.++++++||+++
T Consensus 137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 4 36789999999999 899888654321 46778899999999999
Q ss_pred eEEEcCCceeEEEEeC
Q 017835 350 KITDVLGVRSLIEVYP 365 (365)
Q Consensus 350 ~~~~~~~~~~vi~~~~ 365 (365)
++....++.+++.-+|
T Consensus 181 ~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 181 LKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EeeccCCEEEEEEecc
Confidence 9998888888887654
No 86
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.52 E-value=3.6e-14 Score=128.90 Aligned_cols=154 Identities=10% Similarity=0.011 Sum_probs=109.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC-C--CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI-P--PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-~--~~D~i~~~ 265 (365)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 367789999999999999998876 4569999999 888888775 1468999999987 54 2 49999999
Q ss_pred ccccc--CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc--------cCccc----------hh-hhhhhhhhhh
Q 017835 266 CVLHN--WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK--------ADYKT----------TE-TQLFMDMLMM 324 (365)
Q Consensus 266 ~vlh~--~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~--------~~~~~----------~~-~~~~~d~~~~ 324 (365)
.++|| .+.++..++|++++++|+| ||++++..+...... ....+ .. ....+.+...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99998 5666778999999999999 899998875432100 00000 00 0000000000
Q ss_pred h---ccCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 325 V---LVKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 325 ~---~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
. ......++.++|.++++++||+++++....
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 0 011244689999999999999999887653
No 87
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.52 E-value=5.1e-14 Score=134.37 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=108.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC------CC--CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE------AI--PP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~------~~--~~ 258 (365)
..+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. ++ ..
T Consensus 97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 45556665 567889999999999999999987 569999999 8888888753 34443332222 11 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++.+++||+++. ..+|++++++|+| ||++++..+...... ....+..+. ..+...++.++|.
T Consensus 172 fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~------~~~~~~~~~---~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDIV------AKTSFDQIF---DEHFFLFSATSVQ 237 (416)
T ss_dssp EEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHHH------HHTCGGGCS---TTCCEECCHHHHH
T ss_pred EEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHhh------hhcchhhhh---hhhhhcCCHHHHH
Confidence 9999999999999876 7899999999999 888888655432110 000011110 1233456999999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998865
No 88
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.51 E-value=1e-13 Score=122.94 Aligned_cols=142 Identities=19% Similarity=0.243 Sum_probs=102.3
Q ss_pred cCCCeEEEecCCc--cHHHHHHH-HHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---------CCc
Q 017835 199 EGLNTLVDVGGGT--GTLASAIA-KKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---------PPA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---------~~~ 259 (365)
.+..+|||||||+ +.++..++ +..|+.+++++|. |.|++.++. ..+++++.+|+.++. ..+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3568999999997 44445544 4689999999999 999999875 237999999998731 125
Q ss_pred e-----EEEeccccccCChhH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC
Q 017835 260 D-----AVLIKCVLHNWNDEE-CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 260 D-----~i~~~~vlh~~~~~~-~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
| .++++.+|||+++++ ...+|++++++|+| ||.|++.+...+.... ......+.+.........||
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQ-----EVGRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHH-----HHHHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHH-----HHHHHHHHHHhcCCCCccCC
Confidence 5 688999999999875 47899999999999 9999988876542111 11112222222112345689
Q ss_pred HHHHHHHHHhcCCccce
Q 017835 334 EKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~ 350 (365)
.+|+.++|. ||++++
T Consensus 229 ~~ei~~~f~--Glelve 243 (277)
T 3giw_A 229 HAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHHTTT--TSEECT
T ss_pred HHHHHHHhC--CCcccC
Confidence 999999994 998543
No 89
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.51 E-value=4.8e-13 Score=118.56 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=81.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEec-ccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIK-CVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~-~vl 268 (365)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. ..+
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence 356789999999999999999987 679999999 888888774 3479999999987 444 59999986 566
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++++.++..++|++++++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 777777789999999999999 7877653
No 90
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.50 E-value=1.4e-13 Score=118.58 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=99.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEeccccccCCh
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~ 273 (365)
++.+|||||||+|.++..+ +. +++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++||+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999998877 45 8999999 888888876 4689999999987 544 4999999999999987
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh-hhhccCccccCHHHHHHHHHhcCCccceEE
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML-MMVLVKGEERNEKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 352 (365)
. .++|++++++|+| ||++++.++..... +.......... .......+.++.+++.++|+ | ++++.
T Consensus 111 ~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G--~~~~~ 176 (211)
T 2gs9_A 111 V--ERVLLEARRVLRP---GGALVVGVLEALSP-----WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P--PEAEG 176 (211)
T ss_dssp H--HHHHHHHHHHEEE---EEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S--CSEEE
T ss_pred H--HHHHHHHHHHcCC---CCEEEEEecCCcCc-----HHHHHHHHhhccCccccccccCCHHHHHHHhc--C--cceeE
Confidence 6 6899999999999 89999987654321 10000000000 00011245579999999998 7 44443
Q ss_pred E
Q 017835 353 D 353 (365)
Q Consensus 353 ~ 353 (365)
.
T Consensus 177 ~ 177 (211)
T 2gs9_A 177 E 177 (211)
T ss_dssp E
T ss_pred E
Confidence 3
No 91
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.49 E-value=3.8e-13 Score=115.11 Aligned_cols=134 Identities=12% Similarity=0.049 Sum_probs=102.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
.+. +|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++. +.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CC
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hh
Confidence 344 9999999999999999887 569999999 888888775 3489999999987 544 59999984 34
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
|++.++...+|++++++|+| ||.+++..+........ .. ........++.+++.++|+ ||+++
T Consensus 104 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQYN---------TG---GPKDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGGT---------SC---CSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccCC---------CC---CCCcceeecCHHHHHHHhc--CceEE
Confidence 56767778999999999999 89999988754332110 00 0001123469999999999 99988
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
++...
T Consensus 167 ~~~~~ 171 (202)
T 2kw5_A 167 IANNL 171 (202)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
No 92
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.49 E-value=6.6e-13 Score=116.22 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=101.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC-----CC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA-----IP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~-----~~-~~D~i~~~~ 266 (365)
..++.+|||||||+|.++..+++.++..+++++|. +.+++.+++ ..++.++.+|+.++ .+ .||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 56778999999999999999999988789999999 888876653 47899999999862 22 599998
Q ss_pred ccccCChh-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 267 VLHNWNDE-ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 267 vlh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
|+++++ ....+|+++.+.|+| ||++++. .......... ... ....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~---~~~--------------~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTK---DPK--------------EIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSS---CHH--------------HHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCC---CHH--------------HhhHHHHH-HHHHCC
Confidence 455443 346679999999999 8998887 3221111110 000 01236777 899999
Q ss_pred CccceEEEcCCc---eeEEEEe
Q 017835 346 FSDYKITDVLGV---RSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~~ 364 (365)
|+++++.....+ +.++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999998887544 5555554
No 93
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.49 E-value=7e-13 Score=113.74 Aligned_cols=120 Identities=13% Similarity=0.277 Sum_probs=97.9
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---CC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---PP 258 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~~ 258 (365)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|. +.+++.+++ .++++++.+|+.+.. +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3445555 67789999999999999999999999999999999 888888875 368999999997732 46
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++...++ ...++++++.++|+| ||++++..... .+.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~----------------------------~~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTL----------------------------DTLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBH----------------------------HHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEeccc----------------------------ccHHHHH
Confidence 99999988775 336889999999999 89998865321 0356778
Q ss_pred HHHHhcCC
Q 017835 339 KLFFEAGF 346 (365)
Q Consensus 339 ~ll~~aGf 346 (365)
++++++||
T Consensus 153 ~~l~~~g~ 160 (204)
T 3e05_A 153 EFLEDHGY 160 (204)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 88899998
No 94
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.49 E-value=5.9e-14 Score=121.49 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=84.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
..+..+|||||||+|.++..+++.+ .+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999884 58999999 888888875 3589999999988333 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 271 WND-EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 271 ~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+++ +...++|++++++|+| ||.+++..+
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 986 4556899999999999 898888765
No 95
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.49 E-value=5.7e-13 Score=111.05 Aligned_cols=119 Identities=15% Similarity=0.203 Sum_probs=97.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC--CceEEEeccccccCChh-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP--PADAVLIKCVLHNWNDE- 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~~~~~- 274 (365)
.++.+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|+++..+|+.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 456799999999999999999886 9999999 888887 5789999999998655 49999999888865443
Q ss_pred ------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 275 ------ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 275 ------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
....+++++.+.+ | ||++++.+... .+.+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 3467889999999 8 89999877421 14678899999999998
Q ss_pred ceEEEcC
Q 017835 349 YKITDVL 355 (365)
Q Consensus 349 ~~~~~~~ 355 (365)
..+....
T Consensus 144 ~~~~~~~ 150 (170)
T 3q87_B 144 RILKVRK 150 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 8887663
No 96
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.49 E-value=4.8e-14 Score=127.83 Aligned_cols=139 Identities=15% Similarity=0.160 Sum_probs=97.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CC---------------------------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NG--------------------------------- 243 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--------------------------------- 243 (365)
++.+|||||||+|.++ .++...+..+++++|+ +.+++.+++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445669999999 888886654 10
Q ss_pred -CeEEEeCCCCC--C-----CC--CceEEEeccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc
Q 017835 244 -NLKYVGGNMFE--A-----IP--PADAVLIKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK 311 (365)
Q Consensus 244 -~i~~~~~d~~~--~-----~~--~~D~i~~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~ 311 (365)
.++++.+|+.+ + ++ .||+|++..++|++++. +..++|++++++||| ||+|++.+.......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~~---- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWY---- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEE----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcceE----
Confidence 14566778876 2 22 29999999999985533 558899999999999 999999864321100
Q ss_pred chhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 312 TTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 312 ~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
. ..+ .......++.++|.++|+++||+++++...+
T Consensus 223 --~---~~~----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 223 --L---AGE----ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp --E---ETT----EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --E---cCC----eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0 000 0011234589999999999999998876553
No 97
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.47 E-value=1.3e-12 Score=117.68 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=105.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEecc---
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKC--- 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~--- 266 (365)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.++.+ .||+|++..
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 4567999999999999999999999999999999 888888774 2579999999988543 599999973
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc
Q 017835 267 ----------VLHNWND----------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL 326 (365)
Q Consensus 267 ----------vlh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 326 (365)
+++|.+. .....+++++.+.|+| ||++++...
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------------------------
Confidence 4444331 3447899999999999 787777411
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEEe
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEVY 364 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 364 (365)
..+.+++.++++++||+.++++.. .+...++.++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 014678899999999998887654 5666666665
No 98
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.47 E-value=1.7e-13 Score=118.85 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=98.4
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh----ccc------CCCeEEEeCCCCC-CCC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVAD----LKS------NGNLKYVGGNMFE-AIP 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~i~~~~~d~~~-~~~ 257 (365)
.+..+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ ..+++++.+|+.+ +++
T Consensus 19 ~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 96 (218)
T 3mq2_A 19 EFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL 96 (218)
T ss_dssp HHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC
T ss_pred HHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC
Confidence 344444 56788999999999999999999999999999999 776654 221 3589999999988 444
Q ss_pred -CceEEEe---cccc--ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccc
Q 017835 258 -PADAVLI---KCVL--HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEE 331 (365)
Q Consensus 258 -~~D~i~~---~~vl--h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 331 (365)
+.|.|.+ ...+ ||++++ ..+|++++++||| ||++++.-....-.... . ...+.. .....
T Consensus 97 ~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~---~~~~~~----~~~~~ 161 (218)
T 3mq2_A 97 SGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSV---P---EVGEHP----EPTPD 161 (218)
T ss_dssp CCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBC---G---GGTTCC----CCCHH
T ss_pred CCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEeccccccccc---c---ccccCC----ccchH
Confidence 2365552 2223 255555 6889999999999 88888833211110000 0 000000 01111
Q ss_pred cCHHHHHHHHHhcCCccceEEEcC
Q 017835 332 RNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
+..+++.++++++||++.++....
T Consensus 162 ~~~~~l~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 162 SADEWLAPRYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCceeeeccc
Confidence 234568889999999998876653
No 99
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.46 E-value=4.1e-14 Score=124.45 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=93.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC---CCC--CceEEEe--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE---AIP--PADAVLI-- 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~~--~~D~i~~-- 264 (365)
..++.+|||||||+|..+..+++..|. +++++|+ +.+++.+++ ..+++++.+|... +++ .||.|++
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEee
Confidence 356789999999999999999887664 8999999 999998875 4578888888754 344 4898875
Q ss_pred ---ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 265 ---KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 265 ---~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
...++|+.+. ..++++++|+||| ||++++.+......... ..++ .......+.+...|
T Consensus 137 ~~~~~~~~~~~~~--~~~~~e~~rvLkP---GG~l~f~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~L 197 (236)
T 3orh_A 137 YPLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNLTSWGELMK-------SKYS-------DITIMFEETQVPAL 197 (236)
T ss_dssp CCCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCHHHHHHHTT-------TTCS-------CHHHHHHHHTHHHH
T ss_pred eecccchhhhcch--hhhhhhhhheeCC---CCEEEEEecCCchhhhh-------hhhh-------hhhhhhHHHHHHHH
Confidence 4445555554 7899999999999 89887755322111000 0000 00111345667788
Q ss_pred HhcCCccceEE
Q 017835 342 FEAGFSDYKIT 352 (365)
Q Consensus 342 ~~aGf~~~~~~ 352 (365)
.++||+++.+.
T Consensus 198 ~eaGF~~~~i~ 208 (236)
T 3orh_A 198 LEAGFRRENIR 208 (236)
T ss_dssp HHHTCCGGGEE
T ss_pred HHcCCeEEEEE
Confidence 89999976553
No 100
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.44 E-value=3.2e-13 Score=117.84 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=92.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhc---cc------CCCeEEEeCCCCCC-CCCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ--PHVVADL---KS------NGNLKYVGGNMFEA-IPPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~------~~~i~~~~~d~~~~-~~~~D~i~~~~ 266 (365)
.++.+|||||||+|.++..+++..|+.+++++|+ +.+++.| ++ ..++.++.+|+.+- ...+|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 5678999999999999999999899999999998 3454444 43 35799999998762 21235554444
Q ss_pred ccccCChhH------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 267 VLHNWNDEE------CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 267 vlh~~~~~~------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
+.+.|+... ...+|++++++||| ||++++....... ....++ ...... .........+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~-~~~~~~----~~~~~~---~~~~~~~~~~el~~~ 171 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDS-YEEAEI----KKRGLP---LLSKAYFLSEQYKAE 171 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEecccc-chhchh----hhcCCC---CCChhhcchHHHHHH
Confidence 443333210 14689999999999 8999884433322 110000 000000 000011122469999
Q ss_pred HHhcCCccceEEEcC
Q 017835 341 FFEAGFSDYKITDVL 355 (365)
Q Consensus 341 l~~aGf~~~~~~~~~ 355 (365)
++++||++..+...+
T Consensus 172 l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 172 LSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCCeeeeeecC
Confidence 999999988876654
No 101
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.43 E-value=3.2e-12 Score=108.12 Aligned_cols=141 Identities=15% Similarity=0.270 Sum_probs=106.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CC--CeEEEeCCCCCCCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NG--NLKYVGGNMFEAIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~i~~~~~d~~~~~~- 257 (365)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. +++++.+|+.+..+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 34555555 567789999999999999999988 779999999 888887764 23 49999999988544
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++|+ ..+....+++++++.|+| ||.+++...... ...+
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 165 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKS 165 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHH
Confidence 5999999888774 445567899999999999 899888765320 1234
Q ss_pred HHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 337 WAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+.+.+++. |..+++......+.++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 66667776 66667766665666666654
No 102
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.43 E-value=2.4e-12 Score=111.88 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=100.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC----C--CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA----I--PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~----~--~~~D~i~~~ 265 (365)
++++.+|||+|||+|.++..+++. .|+-+++++|. +.+++.+++ ..++..+.+|...+ . ..+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 789999999999999999999997 68899999999 888887764 56899999988763 1 148888753
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
+++..+ ...+++++++.||| ||+++|.......+...+ .....++-.+.|+++|
T Consensus 155 --~~~~~~--~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~p-------------------~~~~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 --VAQPEQ--AAIVVRNARFFLRD---GGYMLMAIKARSIDVTTE-------------------PSEVYKREIKTLMDGG 208 (233)
T ss_dssp --CCCTTH--HHHHHHHHHHHEEE---EEEEEEEEECCHHHHHTC-------------------CCHHHHHHHHHHHHTT
T ss_pred --ccCChh--HHHHHHHHHHhccC---CCEEEEEEecccCCCCCC-------------------hHHHHHHHHHHHHHCC
Confidence 222233 36789999999999 999988754322211110 0001123345678999
Q ss_pred CccceEEEcCC---ceeEEEEe
Q 017835 346 FSDYKITDVLG---VRSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~---~~~vi~~~ 364 (365)
|++++...+.. .+.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 99999888744 25555543
No 103
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.42 E-value=1.6e-12 Score=116.29 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=80.8
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHHhcccC----------------------------
Q 017835 200 GLNTLVDVGGGTGT----LASAIAKKFP----HIECTVFDQ-PHVVADLKSN---------------------------- 242 (365)
Q Consensus 200 ~~~~iLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 242 (365)
+..+|+|+|||+|. ++..|++.++ +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666677645 468999999 9999988641
Q ss_pred ---------CCeEEEeCCCCC-CCC---CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 243 ---------GNLKYVGGNMFE-AIP---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 243 ---------~~i~~~~~d~~~-~~~---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.+|+|..+|+.+ +++ .||+|+|.++++|++++...+++++++++|+| ||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 268999999998 454 59999999999999998889999999999999 777766
No 104
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.41 E-value=1.7e-12 Score=118.20 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=99.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CC-------CeEEEeCCCCC---------CCC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NG-------NLKYVGGNMFE---------AIP 257 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-------~i~~~~~d~~~---------~~~ 257 (365)
++.+|||||||+|..+..++.. ...+++|+|+ +.+++.|++ .. ++++...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766654 3468999999 999998875 11 25677888732 223
Q ss_pred --CceEEEeccccccC-ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccC---------------ccchhhh---
Q 017835 258 --PADAVLIKCVLHNW-NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKAD---------------YKTTETQ--- 316 (365)
Q Consensus 258 --~~D~i~~~~vlh~~-~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~---------------~~~~~~~--- 316 (365)
.||+|+|..++|+. +.++...+|++++++|+| ||.+++..+....-... ..+....
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 59999999999974 444557999999999999 89988876532110000 0000000
Q ss_pred --hhhhhhhhh-ccC--ccccCHHHHHHHHHhcCCccceEEEc
Q 017835 317 --LFMDMLMMV-LVK--GEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 317 --~~~d~~~~~-~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
....+.... ... ....+.+++.++++++||+++.....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 000000000 001 12357899999999999999887654
No 105
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.41 E-value=8.2e-13 Score=122.83 Aligned_cols=112 Identities=12% Similarity=0.140 Sum_probs=90.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEEEeCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKYVGGN 251 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d 251 (365)
..+++.+. ..++.+|||||||+|..+..++...+..+++|+|+ +.+++.|+. ..+|+++.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555555 67889999999999999999998887667999999 666666542 2689999999
Q ss_pred CCC-CC----CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 252 MFE-AI----PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 252 ~~~-~~----~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
+.+ ++ ..+|+|++..+++ + ++..+.|+++++.||| ||+|++.|.+.+.+.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 998 44 3699999987764 3 3447788999999999 999999999887654
No 106
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.40 E-value=2.3e-12 Score=128.45 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=86.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------------CCCeEEEeCCCCC-CCC--Cce
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------------NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~-~~~--~~D 260 (365)
..++.+|||||||+|.++..|++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3577899999999999999999987 5679999999 888888864 2579999999988 443 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
+|++..++||++++....++++++++|+| | .++|..+.
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence 99999999999999888999999999999 6 66666543
No 107
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.39 E-value=1.8e-12 Score=114.95 Aligned_cols=107 Identities=17% Similarity=0.088 Sum_probs=83.3
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--C-CCeEEEeCCCCC----C-CC
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--N-GNLKYVGGNMFE----A-IP 257 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~-~~i~~~~~d~~~----~-~~ 257 (365)
...+++.++ ..++.+|||||||+|.++..|+++ +.+++++|+ +.+++.+++ . ..+.....++.. . ..
T Consensus 34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTT
T ss_pred HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCC
Confidence 345556665 677899999999999999999987 569999999 889998875 1 223322222221 1 12
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++..++||++.++...++++++++| | ||++++...
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 599999999999999888899999999999 9 999998754
No 108
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.39 E-value=7.6e-12 Score=107.86 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=94.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH----HHhcccCCCeEEEeCCCCCC-----CC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHV----VADLKSNGNLKYVGGNMFEA-----IP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~i~~~~~d~~~~-----~~-~~D~i~~~~ 266 (365)
.+++.+|||||||+|.++..+++..++.+++++|+ +.+ .+.++...++.++.+|+..+ .+ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 46778999999999999999999987779999999 654 34444456899999998763 22 49999986
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH----HHHHH
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW----AKLFF 342 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~----~~ll~ 342 (365)
+.+ ..+...++++++++||| ||++++.-...+. +. ..+.+++ .+.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~~--------------~~---------~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARSI--------------DS---------TAEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH--------------CT---------TSCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCCc--------------cc---------cCCHHHHHHHHHHHHH
Confidence 332 23335569999999999 8999887322100 00 0022222 12378
Q ss_pred hcCCccceEEEcCC---ceeEEEEeC
Q 017835 343 EAGFSDYKITDVLG---VRSLIEVYP 365 (365)
Q Consensus 343 ~aGf~~~~~~~~~~---~~~vi~~~~ 365 (365)
++ |++++...... .+.++.++|
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 88 99999887732 356666653
No 109
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.39 E-value=4.4e-13 Score=117.79 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=78.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC---CCC--CceEEEe-cc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE---AIP--PADAVLI-KC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~~--~~D~i~~-~~ 266 (365)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 5678999999999999999966543 48999999 888888775 3679999999876 344 4999999 55
Q ss_pred cc--ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 267 VL--HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vl--h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.+ +++.......++++++++||| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 53 344444456789999999999 9999887754
No 110
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.39 E-value=5.3e-12 Score=110.21 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=100.3
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCC--CCCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGG-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMF--EAIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~--~~~~--~~D~i~~~~ 266 (365)
.+++.+|||+||| +|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+. .+.+ .||+|++..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4678899999999 999999999986 779999999 888888874 237999999964 3443 599999987
Q ss_pred ccccCChhH-----------------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 267 VLHNWNDEE-----------------CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 267 vlh~~~~~~-----------------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
.+++.++.. ...+++++.+.|+| ||+++++-+...
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence 766544321 26889999999999 899888632100
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCCc--eeEEEEe
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLGV--RSLIEVY 364 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~--~~vi~~~ 364 (365)
...+++.+++++.||.+..+....+. ..++.+.
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~ 218 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFF 218 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEE
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEe
Confidence 13567888999999987776555553 4455543
No 111
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.37 E-value=3.2e-13 Score=116.34 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=88.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-----CCeEEEeCCCCCCC-------CCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-----GNLKYVGGNMFEAI-------PPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~-------~~~D~i~~~ 265 (365)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.++. ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 6778999999999999999999999999999999 8888888751 16888899988732 459999996
Q ss_pred cccc------cCChhHH------------------HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhh
Q 017835 266 CVLH------NWNDEEC------------------VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDM 321 (365)
Q Consensus 266 ~vlh------~~~~~~~------------------~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 321 (365)
..++ +++.+.. ..++++++++|+| ||++++++...
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~------------------ 167 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH------------------ 167 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC------------------
Confidence 4443 3333222 6789999999999 89966665421
Q ss_pred hhhhccCccccCHHHHHHHHH--hcCCccceEEEcC-CceeEEEE
Q 017835 322 LMMVLVKGEERNEKEWAKLFF--EAGFSDYKITDVL-GVRSLIEV 363 (365)
Q Consensus 322 ~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~ 363 (365)
...+++.++++ +.||..+++.... +...++.+
T Consensus 168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~ 202 (215)
T 4dzr_A 168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAV 202 (215)
T ss_dssp ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEE
T ss_pred ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEE
Confidence 13566778888 8999888877763 34444444
No 112
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.37 E-value=2.5e-12 Score=110.78 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=85.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 366789999999999999999998654 8999999 888888775 3689999999987 554 499999999987
Q ss_pred cCC-------------hhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 270 NWN-------------DEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 270 ~~~-------------~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
++. .+...++|++++++|+| ||++++.++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 765 34568999999999999 99999988643
No 113
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.37 E-value=1.9e-12 Score=108.14 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=81.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC----C
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI----P 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~----~ 257 (365)
++..+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++ ++.+|..+.+ .
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 344444 56778999999999999999999999999999999 888888774 2378 8888887632 4
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++..++|+ ..+++++.++|+| ||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEee
Confidence 5999999999986 4679999999999 899988664
No 114
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.36 E-value=5.3e-12 Score=110.59 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=95.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHH----hcccCCCeEEEeCCCCCC--C----CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVA----DLKSNGNLKYVGGNMFEA--I----PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~i~~~~~d~~~~--~----~~~D~i~~~ 265 (365)
+.++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++ .++...+++++.+|+.++ . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5678899999999999999999986 7789999999 55443 444458899999999872 2 249999985
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.. ..+....++++++++|+| ||++++ ........... ..... -..+ .++|+++|
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i-~~~~~~~~~~~---~~~~~--------------~~~~-~~~l~~~G 208 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVI-SIKANCIDSTA---SAEAV--------------FASE-VKKMQQEN 208 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEE-EEEHHHHCSSS---CHHHH--------------HHHH-HHTTGGGT
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEE-EEcccccccCC---CHHHH--------------HHHH-HHHHHHCC
Confidence 44 233345678999999999 888888 32221000000 00000 1123 58889999
Q ss_pred CccceEEEcCCc---eeEEEE
Q 017835 346 FSDYKITDVLGV---RSLIEV 363 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~ 363 (365)
|+++++.....+ +.++.+
T Consensus 209 f~~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 209 MKPQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp EEEEEEEECTTTSSSEEEEEE
T ss_pred CceEEEEecCCccCCcEEEEE
Confidence 999987776432 444444
No 115
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.35 E-value=7.9e-12 Score=110.93 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=99.5
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-- 257 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+.++
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 3444555 677899999999999999999999 88999999999 888888775 3569999999998655
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++ +.+++ ..+++++.++|+| ||++++..+... ...++
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~ 203 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMRL 203 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHHH
Confidence 4999987 34544 5789999999999 899988653210 24566
Q ss_pred HHHHHhcC--CccceEEEc
Q 017835 338 AKLFFEAG--FSDYKITDV 354 (365)
Q Consensus 338 ~~ll~~aG--f~~~~~~~~ 354 (365)
.+++++.| |..+++...
T Consensus 204 ~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHcCCCccccEEEEE
Confidence 77888899 887777654
No 116
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.34 E-value=4.9e-13 Score=118.78 Aligned_cols=144 Identities=11% Similarity=0.035 Sum_probs=96.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC----CCC-----CceEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE----AIP-----PADAV 262 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~----~~~-----~~D~i 262 (365)
+..+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999888899999999 888888875 3469999999543 333 49999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 263 LIKCVLHNWND-------------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 263 ~~~~vlh~~~~-------------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
++....|+... +....++.+++++|+| ||.+.+++....... .............+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~~~--------~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHDSL--------QLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHHHH--------HHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHHHH--------hcccceEEEEECCC
Confidence 99866654431 1123567889999999 898888765432100 00000001111123
Q ss_pred cccCHHHHHHHHHhcCCccceEEEc
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
...+.+++.++++++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 3445688999999999998887766
No 117
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.34 E-value=8.8e-12 Score=110.73 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=99.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCC--CCceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAI--PPADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--~~~D~i~~~~vlh 269 (365)
..++.+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ .-.+++..+|+.+.+ ..||+|+++...|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999988755 9999999 888887774 112889999987744 3599999865543
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
....+++++++.|+| ||++++.+... .+.+++.++++++||+++
T Consensus 196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~----------------------------~~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 -----LHAALAPRYREALVP---GGRALLTGILK----------------------------DRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEG----------------------------GGHHHHHHHHHHTTCEEE
T ss_pred -----HHHHHHHHHHHHcCC---CCEEEEEeecc----------------------------CCHHHHHHHHHHCCCEEE
Confidence 346889999999999 89988865421 036788999999999999
Q ss_pred eEEEcCCceeEE
Q 017835 350 KITDVLGVRSLI 361 (365)
Q Consensus 350 ~~~~~~~~~~vi 361 (365)
++....++.+++
T Consensus 240 ~~~~~~~W~~l~ 251 (254)
T 2nxc_A 240 EEAAEGEWVLLA 251 (254)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCeEEEE
Confidence 998888776654
No 118
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.34 E-value=1e-11 Score=107.35 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=102.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP---PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~---~~D~i~~~~ 266 (365)
.+++.+|+|||||+|.+++.+++.+|..+++++|. +.+++.|++ .++|++..+|.+++++ .||+|++..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 35678999999999999999999999889999999 888888875 4689999999998655 499998865
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+ ..+-..++|..+.+.|+| +|++++ .+.. ..+.++++|.+.||
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGF 135 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTE
T ss_pred C----ChHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCC
Confidence 4 334467899999999998 777666 3321 34567888999999
Q ss_pred ccceEEEc---CCceeEEEEe
Q 017835 347 SDYKITDV---LGVRSLIEVY 364 (365)
Q Consensus 347 ~~~~~~~~---~~~~~vi~~~ 364 (365)
.+++-.-+ .-+|.+|.+.
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98876533 3357788775
No 119
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.34 E-value=6.3e-12 Score=112.71 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=80.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCCCceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIPPADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~~~D~i~~~~vlh 269 (365)
.+++.+|||||||+|.++..++.+.++.+++++|+ +.+++.|++ .++++++.+|+.+ +..+||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 67889999999999988766667778999999999 999998875 3789999999987 4346999998654
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.++. .+++++++++||| ||+|++.+.
T Consensus 198 -~~d~--~~~l~el~r~LkP---GG~Lvv~~~ 223 (298)
T 3fpf_A 198 -AEPK--RRVFRNIHRYVDT---ETRIIYRTY 223 (298)
T ss_dssp -CSCH--HHHHHHHHHHCCT---TCEEEEEEC
T ss_pred -ccCH--HHHHHHHHHHcCC---CcEEEEEcC
Confidence 2333 6899999999999 999998763
No 120
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.34 E-value=3.8e-12 Score=114.51 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=94.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc----C---CCeEEEeCCCCCCCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS----N---GNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~~i~~~~~d~~~~~~-- 257 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ . .+++++.+|+.++++
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 3444455 677889999999999999999998 78899999999 888887764 2 579999999988655
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++ +++++ .++|+++.++|+| ||++++..+... ..+++
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~ 220 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKT 220 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence 4999998 34554 5789999999999 899988763210 13455
Q ss_pred HHHHHhcCCccceEEE
Q 017835 338 AKLFFEAGFSDYKITD 353 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~ 353 (365)
.+.++++||+.+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 6667778887776655
No 121
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.33 E-value=3e-11 Score=105.29 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=97.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhcc----cCCCeEEEeCCCCCC-----CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLK----SNGNLKYVGGNMFEA-----IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~i~~~~~d~~~~-----~~-~~D~i~~~ 265 (365)
..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+. ...+++++.+|+.+. .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5677899999999999999999884 6689999999 76665543 246899999999872 23 49999975
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.. .......++++++++|+| ||++++. .......... . ......+++.++ .++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~---~--------------~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK---E--------------PEQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS---C--------------HHHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCC---C--------------hhhhhHHHHHHH-Hhh-
Confidence 43 222334569999999999 8998887 3221111110 0 001245677777 777
Q ss_pred CccceEEEcCCc---eeEEEEe
Q 017835 346 FSDYKITDVLGV---RSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~~ 364 (365)
|++++...+... +.++.++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEE
T ss_pred ceeeeEeccCcccCCCEEEEEE
Confidence 999988887544 5555554
No 122
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.33 E-value=4.6e-12 Score=111.54 Aligned_cols=120 Identities=20% Similarity=0.233 Sum_probs=93.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC-----CCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI-----PPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----~~~D~i~~~ 265 (365)
.++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4678999999999999999999889999999999 888888764 3479999999876 32 259999987
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.+ .+ ...+++++.++|+| ||++++..... . . ...+++.+.+++.|
T Consensus 149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~-----~----~-----------------~~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKK---NGLFVALKAAS-----A----E-----------------EELNAGKKAITTLG 193 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEE---EEEEEEEECC------C----H-----------------HHHHHHHHHHHHTT
T ss_pred cc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC-----c----h-----------------HHHHHHHHHHHHcC
Confidence 63 33 36899999999999 89888763110 0 0 02356778889999
Q ss_pred CccceEEE
Q 017835 346 FSDYKITD 353 (365)
Q Consensus 346 f~~~~~~~ 353 (365)
|++.++..
T Consensus 194 ~~~~~~~~ 201 (240)
T 1xdz_A 194 GELENIHS 201 (240)
T ss_dssp EEEEEEEE
T ss_pred CeEeEEEE
Confidence 99887754
No 123
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.33 E-value=9.5e-12 Score=104.82 Aligned_cols=133 Identities=12% Similarity=0.115 Sum_probs=91.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--CC-C-CceEEEec-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--AI-P-PADAVLIK- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~~-~-~~D~i~~~- 265 (365)
.+++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++..|+.. +. + .||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 467789999999999999999987 789999999 889888875 3789999977655 12 3 49999876
Q ss_pred cccccC------ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 266 CVLHNW------NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 266 ~vlh~~------~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
..+++- ..+....+|+++.++|+| ||++++........... . .....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~----------------~~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----E----------------KDAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----H----------------HHHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----H----------------HHHHHHHHH
Confidence 333220 224457889999999999 89998876532221110 0 012345555
Q ss_pred HHHhcCCccceEEEcC
Q 017835 340 LFFEAGFSDYKITDVL 355 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~ 355 (365)
.+...+|.+.......
T Consensus 155 ~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 155 GLDQRVFTAMLYQPLN 170 (185)
T ss_dssp HSCTTTEEEEEEEESS
T ss_pred hCCCceEEEEEehhhc
Confidence 5566778887776663
No 124
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.33 E-value=1.9e-11 Score=104.88 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=93.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CC-CeEEEeCCCCCC---CCC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NG-NLKYVGGNMFEA---IPP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~i~~~~~d~~~~---~~~ 258 (365)
++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .. +++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344455 567889999999999999999988 789999999 888888775 23 899999999882 346
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++...+ +. . +++++.++|+| ||++++..... .+..++.
T Consensus 123 ~D~v~~~~~~----~~--~-~l~~~~~~Lkp---gG~lv~~~~~~----------------------------~~~~~~~ 164 (204)
T 3njr_A 123 PEAVFIGGGG----SQ--A-LYDRLWEWLAP---GTRIVANAVTL----------------------------ESETLLT 164 (204)
T ss_dssp CSEEEECSCC----CH--H-HHHHHHHHSCT---TCEEEEEECSH----------------------------HHHHHHH
T ss_pred CCEEEECCcc----cH--H-HHHHHHHhcCC---CcEEEEEecCc----------------------------ccHHHHH
Confidence 9999987744 22 3 89999999999 89988855321 0345667
Q ss_pred HHHHhcCCccceEE
Q 017835 339 KLFFEAGFSDYKIT 352 (365)
Q Consensus 339 ~ll~~aGf~~~~~~ 352 (365)
+++++.|+++.++.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 78888898766653
No 125
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.32 E-value=6.9e-12 Score=114.91 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=82.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCC-C----C--C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFE-A----I--P 257 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~-~----~--~ 257 (365)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999998874 5779999999 888887764 1278999999987 3 3 2
Q ss_pred --CceEEEeccccccC--ChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 258 --PADAVLIKCVLHNW--NDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 258 --~~D~i~~~~vlh~~--~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.||+|++..++|+. +.++...+|++++++|+| ||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCC
Confidence 59999999999987 445668999999999999 8988887653
No 126
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.32 E-value=6.5e-12 Score=107.77 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=75.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.+..+ .||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 468999999999999999999999999999999 888887764 2459999999988433 5999997543
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+ ...++++++++|+| ||.+++.
T Consensus 142 -~~--~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 142 -AS--LNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp -SS--HHHHHHHHTTSEEE---EEEEEEE
T ss_pred -CC--HHHHHHHHHHhcCC---CcEEEEE
Confidence 22 36889999999999 8888876
No 127
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.31 E-value=2.6e-12 Score=112.08 Aligned_cols=114 Identities=12% Similarity=0.142 Sum_probs=88.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC--CCC---CceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE--AIP---PADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~--~~~---~~D~i~~~~vlh~~ 271 (365)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 56789999999999999999998 679999999 888988876 6789999999965 433 499999871
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
+ ...+|++++++|+| ||+++.. +...+.+++.++++++||++..+
T Consensus 120 -~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 -G--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp -C--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred -C--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence 2 25679999999999 8888710 01114456778888888887766
Q ss_pred EEc
Q 017835 352 TDV 354 (365)
Q Consensus 352 ~~~ 354 (365)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
No 128
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.31 E-value=5.8e-11 Score=103.41 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=94.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHH----HhcccCCCeEEEeCCCCCCC------CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVV----ADLKSNGNLKYVGGNMFEAI------PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~~i~~~~~d~~~~~------~~~D~i~~~ 265 (365)
++++.+|||+|||+|.++..+++. .|+.+++++|. +.++ +.+++..++.++.+|+..+. ..||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 678899999999999999999886 56889999999 6554 34444578999999997631 259999886
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
... ++ ....+++.+++.||| ||++++.......+... +..+ ..++....|+++|
T Consensus 154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~d~t~------------------~~~e-~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSIDVTK------------------DPKE-IYKTEVEKLENSN 207 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC-------C------------------CSSS-STTHHHHHHHHTT
T ss_pred CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCcccCC------------------CHHH-HHHHHHHHHHHCC
Confidence 443 33 223345566779999 89999873211110000 0000 1123445678899
Q ss_pred CccceEEEcCC---ceeEEEEe
Q 017835 346 FSDYKITDVLG---VRSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~---~~~vi~~~ 364 (365)
|+++++..+.. .+.++.++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEE
Confidence 99999988833 35555554
No 129
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.31 E-value=1.1e-11 Score=116.31 Aligned_cols=107 Identities=19% Similarity=0.361 Sum_probs=86.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------C--CCeEEEeCCCCCCCC-
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------N--GNLKYVGGNMFEAIP- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~--~~i~~~~~d~~~~~~- 257 (365)
.+++.++ ..+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ . .++++..+|+.++++
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 3555565 45568999999999999999999999999999999 888888774 1 258889999998665
Q ss_pred -CceEEEecccccc---CChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 258 -PADAVLIKCVLHN---WNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 258 -~~D~i~~~~vlh~---~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.||+|++...+|+ ..+....++|+++.+.|+| ||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 5999999988885 3455556899999999999 89998864
No 130
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.31 E-value=1.7e-11 Score=105.88 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=79.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~--~~D~i~~~~ 266 (365)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .||+|++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 3567999999999999999999999999999999 888888764 3689999999987 3 43 499999886
Q ss_pred ccccCChh------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWNDE------ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~~~------~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
........ ....+++++.++|+| ||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 54321110 125789999999999 89888753
No 131
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.31 E-value=2e-11 Score=103.01 Aligned_cols=119 Identities=21% Similarity=0.324 Sum_probs=93.5
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC---CC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI---PP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~---~~ 258 (365)
++..+. ..+..+|||+|||+|.++..+++.+ .+++++|. +.+++.+++ ..++++..+|+.++. +.
T Consensus 25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 344444 5677899999999999999999886 79999999 888887764 268999999987632 46
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++..++++ ...+++++.++|+| ||.+++..... .+..++.
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~~----------------------------~~~~~~~ 144 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAILL----------------------------ETKFEAM 144 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECBH----------------------------HHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecCc----------------------------chHHHHH
Confidence 999999988764 26789999999999 88888865321 0245678
Q ss_pred HHHHhcCCcc
Q 017835 339 KLFFEAGFSD 348 (365)
Q Consensus 339 ~ll~~aGf~~ 348 (365)
+++++.||.+
T Consensus 145 ~~l~~~g~~~ 154 (192)
T 1l3i_A 145 ECLRDLGFDV 154 (192)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHCCCce
Confidence 8899999954
No 132
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.31 E-value=4.8e-12 Score=112.04 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=94.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC-----CCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI-----PPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----~~~D~i~~~ 265 (365)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999999 888888774 3469999999876 32 359999997
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.+- + ...+++.+.+.|+| ||++++........ ...++.+.++..|
T Consensus 159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~~g~~~~~--------------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEV---GGAAVAMKGPRVEE--------------------------ELAPLPPALERLG 203 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEE---EEEEEEEECSCCHH--------------------------HHTTHHHHHHHHT
T ss_pred CcC----C--HHHHHHHHHHHcCC---CeEEEEEeCCCcHH--------------------------HHHHHHHHHHHcC
Confidence 542 2 25789999999999 89988765321100 1235567778889
Q ss_pred CccceEEEc
Q 017835 346 FSDYKITDV 354 (365)
Q Consensus 346 f~~~~~~~~ 354 (365)
|++.++.+.
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 998887765
No 133
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.31 E-value=1.7e-11 Score=111.84 Aligned_cols=129 Identities=13% Similarity=0.179 Sum_probs=95.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC-C---CC-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE-A---IP-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~-~---~~-~~D~i 262 (365)
.+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|+.+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 888887764 3689999999876 2 12 59999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 263 LIKCVLHNWNDEEC--VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 263 ~~~~vlh~~~~~~~--~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
++....+..+.... .+++++++++|+| ||.+++..... +. ......++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~~--------------~~----------~~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGESI--------------WL----------DLELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECCT--------------TT----------CHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCCc--------------cc----------chHHHHHHHHH
Confidence 99776665544322 5889999999999 88888763210 00 01145788899
Q ss_pred HHhcCCccceEEEc
Q 017835 341 FFEAGFSDYKITDV 354 (365)
Q Consensus 341 l~~aGf~~~~~~~~ 354 (365)
++++||..++++..
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887765
No 134
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.31 E-value=2.2e-11 Score=105.44 Aligned_cols=131 Identities=12% Similarity=-0.004 Sum_probs=103.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP---PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~---~~D~i~~~~ 266 (365)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++..+ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 35678999999999999999999988889999999 888888875 4689999999998543 499998866
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+. .+-..++|....+.|++ +|++++.-. ...++++++|.+.||
T Consensus 99 mG----g~lI~~IL~~~~~~l~~---~~~lIlqp~------------------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 99 MG----GRLIADILNNDIDKLQH---VKTLVLQPN------------------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp EC----HHHHHHHHHHTGGGGTT---CCEEEEEES------------------------------SCHHHHHHHHHHTTE
T ss_pred Cc----hHHHHHHHHHHHHHhCc---CCEEEEECC------------------------------CChHHHHHHHHHCCC
Confidence 53 34567899999999998 777666331 035678999999999
Q ss_pred ccceEEEc---CCceeEEEEeC
Q 017835 347 SDYKITDV---LGVRSLIEVYP 365 (365)
Q Consensus 347 ~~~~~~~~---~~~~~vi~~~~ 365 (365)
.+++-.-+ .-+|.||.+.|
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEEe
Confidence 98876544 33588888753
No 135
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.29 E-value=1.1e-11 Score=105.43 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=81.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C-CC--CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A-IP--PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~~--~~D~i~~ 264 (365)
.+++.+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++ ..+++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4677899999999999999999985 6779999999 888888775 2689999999876 2 22 5999998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHN-------WNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~-------~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
...+.. ...+...++++++.++|+| ||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccC
Confidence 765511 1223446799999999999 89999877543
No 136
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.29 E-value=7e-12 Score=116.39 Aligned_cols=109 Identities=18% Similarity=0.302 Sum_probs=88.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC-Cce
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP-PAD 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-~~D 260 (365)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ...++++.+|+.+..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 44555564 34567999999999999999999999999999999 788887774 2346788999987434 599
Q ss_pred EEEecccccc---CChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 261 AVLIKCVLHN---WNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 261 ~i~~~~vlh~---~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+|++..++|+ +..+...++|++++++|+| ||.++++..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 9999999986 2455668999999999999 999998765
No 137
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.28 E-value=4.8e-11 Score=106.27 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=94.3
Q ss_pred cc-CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---CC--CceEEE
Q 017835 198 FE-GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---IP--PADAVL 263 (365)
Q Consensus 198 ~~-~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~~--~~D~i~ 263 (365)
.+ ++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+. ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998765 9999999 888888775 35799999999872 32 599999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 264 IKCVLHNW------------------NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 264 ~~~vlh~~------------------~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
+.-.++.. .......+++.+.++|+| ||+++++-. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~---~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVHR---P-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEEC---T--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEEc---H--------------------
Confidence 96544322 112346799999999999 899888421 1
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
....++.+++++.||...++...
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 03456778888999988776655
No 138
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.27 E-value=1.3e-11 Score=103.22 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=88.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CC---C--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AI---P--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~---~--~~D~i~~~~vl 268 (365)
..++.+|||||||. +.+|. +.+++.+++ ..+++++.+|+.+ +. + .||+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 67889999999996 23787 888888876 3469999999987 44 4 49999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 269 HNW-NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 269 h~~-~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
||+ ++. .++|++++++||| ||++++.++....... ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC-
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC-
Confidence 998 665 7899999999999 9999996654322110 1123578999999999999
Q ss_pred cceEEE
Q 017835 348 DYKITD 353 (365)
Q Consensus 348 ~~~~~~ 353 (365)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 44 444
No 139
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.27 E-value=2.4e-11 Score=101.16 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=76.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------C-CCeEEEeCCCCCC-CC-CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------N-GNLKYVGGNMFEA-IP-PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~i~~~~~d~~~~-~~-~~D~i~~~~v 267 (365)
+.+..+|||+|||+|.++..++...|+++++++|+ +.+++.+++ . .++++ .|..+. .+ +||+|++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 35678999999999999999999999999999999 899998875 2 24555 666553 33 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+|++ ++ ....+.++.+.|+| ||.++-.+
T Consensus 125 LHlL-~~-~~~al~~v~~~L~p---ggvfISfp 152 (200)
T 3fzg_A 125 LPVL-KQ-QDVNILDFLQLFHT---QNFVISFP 152 (200)
T ss_dssp HHHH-HH-TTCCHHHHHHTCEE---EEEEEEEE
T ss_pred HHhh-hh-hHHHHHHHHHHhCC---CCEEEEeC
Confidence 9999 43 35566699999999 55444444
No 140
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.26 E-value=4.3e-11 Score=104.46 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=101.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP---PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~---~~D~i~~~~ 266 (365)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|++..+|.++..+ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 35678999999999999999999988889999999 888888875 4689999999998543 399998865
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+ ..+-..++|.+..+.|++ ++++++.-. . ..+.++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~L~~---~~~lIlq~~-~-----------------------------~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLAG---VTKLILQPN-I-----------------------------AAWQLREWSEQNNW 141 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEES-S-----------------------------CHHHHHHHHHHHTE
T ss_pred C----chHHHHHHHHHHHHHhCC---CCEEEEEcC-C-----------------------------ChHHHHHHHHHCCC
Confidence 4 334567899999999988 677766431 0 35677899999999
Q ss_pred ccceEEEc---CCceeEEEEe
Q 017835 347 SDYKITDV---LGVRSLIEVY 364 (365)
Q Consensus 347 ~~~~~~~~---~~~~~vi~~~ 364 (365)
.+++-..+ .-+|.+|.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98654433 3357787765
No 141
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.26 E-value=3.8e-11 Score=106.57 Aligned_cols=125 Identities=16% Similarity=0.204 Sum_probs=97.1
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-CC-
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-IP- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~~- 257 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..++++..+|+.+. ++
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4555555 678889999999999999999998 77899999999 888887764 26899999999874 55
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++ +++++ ..+|+++.++|+| ||++++..+... ...+
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNIT----------------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 4999997 34554 4789999999999 899998774210 1245
Q ss_pred HHHHHHhcCCccceEEE
Q 017835 337 WAKLFFEAGFSDYKITD 353 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~ 353 (365)
+.+.++++||..+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 56667778888766654
No 142
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.25 E-value=8.7e-11 Score=105.71 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=94.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC-C-CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI-P-PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-~-~~D~i~~~~v 267 (365)
.+++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+.. . .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 356789999999999999999999766 8999999 888888774 356999999998833 3 5999988543
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
. ...++++++.++|+| ||.+++.+....... .....+++.++++++||+
T Consensus 202 ~------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred h------hHHHHHHHHHHHCCC---CeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCe
Confidence 2 125689999999999 899998876532111 012467788999999998
Q ss_pred cce
Q 017835 348 DYK 350 (365)
Q Consensus 348 ~~~ 350 (365)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 765
No 143
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.25 E-value=1.9e-11 Score=108.83 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=79.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~ 274 (365)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++ .||+|++..+++|+.++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 36789999999999999999987 579999999 8888888752111378889887 554 49999999877776433
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
...+|++++++|+| ||++++..+.
T Consensus 131 -~~~~l~~~~~~Lkp---gG~l~~~~~~ 154 (260)
T 2avn_A 131 -KDKAFSEIRRVLVP---DGLLIATVDN 154 (260)
T ss_dssp -HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred -HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 47899999999999 8998887654
No 144
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.23 E-value=2.7e-11 Score=112.65 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=85.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC-Cc
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~ 259 (365)
.+++.+. ..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .|
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 3445554 457789999999999999988875 5569999999557766653 3789999999987 555 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|+|++..+++|+..+.....+.++++.|+| ||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 999999999998877777889999999999 8888743
No 145
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.23 E-value=2.1e-11 Score=105.74 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=77.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC----CC--CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA----IP--PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~~--~~D~i~~~ 265 (365)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .+|.|++.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 3567999999999999999999999999999999 888887764 35799999998762 44 49999887
Q ss_pred cccccCChh-HH------HHHHHHHHHhcccCCCCcEEEEEe
Q 017835 266 CVLHNWNDE-EC------VKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 266 ~vlh~~~~~-~~------~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.... |+.. .. ..++++++++|+| ||.+++..
T Consensus 113 ~~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 113 FPDP-WHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp SCCC-CCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCC-ccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 5433 2221 11 2589999999999 88888765
No 146
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.23 E-value=4.9e-11 Score=102.99 Aligned_cols=98 Identities=17% Similarity=0.282 Sum_probs=77.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~--~~D~i~~~~ 266 (365)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 3567999999999999999999999999999999 888887764 3589999999876 2 43 499988754
Q ss_pred ccccCChh-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWNDE-------ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
... |... ....+|++++++|+| ||.|++..
T Consensus 117 ~~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 117 SDP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 332 2211 025789999999999 89888764
No 147
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.22 E-value=6.9e-11 Score=98.85 Aligned_cols=119 Identities=20% Similarity=0.232 Sum_probs=92.6
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--Cce
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PAD 260 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D 260 (365)
+++.+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++ ..+++++.+|+.++.+ .||
T Consensus 27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 444444 56778999999999999999998 7889999999 888888775 2689999999987544 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
+|++..+ .....+++++++. | ||.+++...... +..++.++
T Consensus 103 ~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~~ 143 (183)
T 2yxd_A 103 KAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIINE 143 (183)
T ss_dssp EEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHHH
T ss_pred EEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHHH
Confidence 9999887 2236788999888 8 899988764210 24567888
Q ss_pred HHhcCCccceE
Q 017835 341 FFEAGFSDYKI 351 (365)
Q Consensus 341 l~~aGf~~~~~ 351 (365)
+++.||.+..+
T Consensus 144 l~~~g~~~~~~ 154 (183)
T 2yxd_A 144 FESRGYNVDAV 154 (183)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHcCCeEEEE
Confidence 89999876554
No 148
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.22 E-value=6.1e-11 Score=112.29 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=85.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhc-------cc--------CCCeEEEeCCC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADL-------KS--------NGNLKYVGGNM 252 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~i~~~~~d~ 252 (365)
.+++.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+++++.+|.
T Consensus 233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3445555 57789999999999999999999887779999999 7776666 32 26899998754
Q ss_pred C-CC------CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 253 F-EA------IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 253 ~-~~------~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
+ .+ ...||+|++.++++ . ++..+.|+++.+.|+| ||+|++.+...+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 4 32 23599999987773 2 3446789999999999 99999998776654
No 149
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.21 E-value=6.7e-11 Score=102.04 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=81.5
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC---C
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP---P 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~---~ 258 (365)
+++.+. ..++.+|||||||+|.++..+++.. |..+++++|. +.+++.+++ ..++++..+|+..+.+ .
T Consensus 69 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 69 MCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 444444 5677899999999999999999987 6689999999 888888764 3579999999876443 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
||+|++..++|++++ ++.+.|+| ||++++...
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 999999999998873 68899999 898888754
No 150
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.21 E-value=3.7e-11 Score=116.10 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=86.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP-P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~ 258 (365)
..+++.+. ..++.+|||||||+|.++..+++ .+..+++++|+.++++.+++ .++++++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 44555554 45678999999999999998887 57789999999557777664 3789999999988 555 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
||+|++..++|++.++.....+.++++.|+| ||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999999888988877778888999999999 888774
No 151
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.21 E-value=5.2e-11 Score=107.11 Aligned_cols=101 Identities=13% Similarity=0.210 Sum_probs=82.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-- 257 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+|+.+.++
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 3455555 677889999999999999999999 68899999999 888888774 1589999999987554
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++ +.+++ ..+|+++.++|+| ||++++..+
T Consensus 181 ~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCP 214 (277)
T ss_dssp SEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEES
T ss_pred ccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeC
Confidence 4999998 23444 5789999999999 898888764
No 152
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.21 E-value=8.3e-11 Score=101.07 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=80.8
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---CCc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---PPA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~~~ 259 (365)
+++.+. ..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++ ..+++++.+|+.+.. ..|
T Consensus 69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 344444 577899999999999999999998 679999999 888888774 357999999998843 259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+|++..++|++++ ++.+.|+| ||++++.-..
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhccc---CcEEEEEEcC
Confidence 99999999999886 47889999 8988886543
No 153
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.21 E-value=6.3e-11 Score=103.17 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=98.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
.+..+|||||||.|-++..+....|..+++++|+ +.+++.++. ..+.++...|+....| .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 888888775 4568889999998444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+.+++....+ ++.++|+| +|.++-++. ..-.+..+ .++ ..-...|.+.+.+.|+.+.+
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~-ksl~Grs~-------gm~----------~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFPT-KSLGQRSK-------GMF----------QNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEEC-C--------------CHH----------HHHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEeccc-hhhcCCCc-------chh----------hHHHHHHHHHHHhcCCceee
Confidence 9888766677 89999999 444444443 21111111 010 01357889999999996544
Q ss_pred EEE
Q 017835 351 ITD 353 (365)
Q Consensus 351 ~~~ 353 (365)
+.-
T Consensus 269 ~~~ 271 (281)
T 3lcv_B 269 LEI 271 (281)
T ss_dssp EEE
T ss_pred eee
Confidence 433
No 154
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.20 E-value=6.9e-11 Score=106.08 Aligned_cols=148 Identities=12% Similarity=0.054 Sum_probs=95.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhc-ccCCCeEEEe-CCCCC----CCC--Cc
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADL-KSNGNLKYVG-GNMFE----AIP--PA 259 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~~i~~~~-~d~~~----~~~--~~ 259 (365)
.+++.+. ...++.+|||||||+|.++..+++. +..+++++|. +.|++.+ +...++.... .|+.. .+| .|
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 3455554 1235679999999999999988886 4469999999 7888773 3345654432 34322 133 39
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc-cCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL-VKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~t~~e~~ 338 (365)
|++++..++|++ ..+|++++++|+| ||+++++- .|..... ....+-.-... .....+..+++.
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~------~~~~~~~G~vrd~~~~~~~~~~v~ 216 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILVD---GGQVVALV--KPQFEAG------REQIGKNGIVRESSIHEKVLETVT 216 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSC------GGGCC-CCCCCCHHHHHHHHHHHH
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEE--CcccccC------hhhcCCCCccCCHHHHHHHHHHHH
Confidence 999998888754 4679999999999 99998862 1111000 00000000000 001123678999
Q ss_pred HHHHhcCCccceEEEc
Q 017835 339 KLFFEAGFSDYKITDV 354 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~ 354 (365)
++++++||++..+..-
T Consensus 217 ~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHTTEEEEEEEEC
T ss_pred HHHHHCCCEEEEEEEC
Confidence 9999999998877664
No 155
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.18 E-value=3.5e-11 Score=104.47 Aligned_cols=99 Identities=11% Similarity=0.189 Sum_probs=79.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CC------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AI------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~------~~~ 259 (365)
..+..+|||||||+|..+..+++.++ +.+++++|+ +.+++.+++ .++++++.+|+.+ .. ..|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 45678999999999999999999864 889999999 888888775 3579999999754 22 359
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+|++....+++.+. .++++.+ +.|+| ||.|++.+..
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCC---CeEEEEeCCC
Confidence 999998877766443 5677777 99999 8887775544
No 156
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.18 E-value=1.7e-10 Score=97.56 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=80.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C--CCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I--PPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~--~~~D~i~~~~ 266 (365)
.++.+|||+|||+|.++..++.. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46789999999999999987774 4568999999 888888875 35899999998872 3 3599999988
Q ss_pred ccccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 017835 267 VLHNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~~ 303 (365)
.+|+ ..+...++++++.+ +|+| ||.+++.....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERATT 156 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence 7664 34456889999999 9999 88888865543
No 157
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.17 E-value=2.4e-10 Score=99.15 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=80.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C-----CCce
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I-----PPAD 260 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~-----~~~D 260 (365)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 45678999999999999999999988 789999999 888887764 45799999998762 1 3599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
+|++... .+....+++++.+.|+| ||.+++-+....
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9998654 23446889999999999 887777665543
No 158
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.17 E-value=7.3e-11 Score=104.45 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=81.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhccc---CC-------C---------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK--FPHIECTVFDQ-PHVVADLKS---NG-------N--------------------- 244 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~-------~--------------------- 244 (365)
.+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.+++ .. +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35679999999999999999998 77889999999 888888874 22 2
Q ss_pred ----eE-------------EEeCCCCCCC------C--CceEEEeccccccCCh-------hHHHHHHHHHHHhcccCCC
Q 017835 245 ----LK-------------YVGGNMFEAI------P--PADAVLIKCVLHNWND-------EECVKILKNCKKAIAINGK 292 (365)
Q Consensus 245 ----i~-------------~~~~d~~~~~------~--~~D~i~~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~ 292 (365)
++ ++.+|++++. + .||+|++...+++..+ +....++++++++|+|
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--- 206 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA--- 206 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---
Confidence 67 9999998843 3 5999999877665443 5567899999999999
Q ss_pred CcEEEEEeee
Q 017835 293 AGKVIIIDIK 302 (365)
Q Consensus 293 gG~lli~e~~ 302 (365)
||+++++...
T Consensus 207 gG~l~~~~~~ 216 (250)
T 1o9g_A 207 HAVIAVTDRS 216 (250)
T ss_dssp TCEEEEEESS
T ss_pred CcEEEEeCcc
Confidence 9999985443
No 159
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.17 E-value=1.7e-10 Score=107.27 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=77.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 456789999999999999999987 5669999999667777764 4569999999988 555 5999999776
Q ss_pred cccC-ChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 268 LHNW-NDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 268 lh~~-~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.+++ ..+....+++++.++|+| ||.++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 5544 223347889999999999 88876
No 160
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.16 E-value=1.6e-10 Score=100.73 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=80.8
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCCCC---Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEAIP---PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~~---~~D 260 (365)
.+++.+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+..+ .||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 3444454 5677899999999999999999985 79999999 888888875 2289999999987332 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
+|++..++|++.+ ++.+.|+| ||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEcC
Confidence 9999999998874 57889999 8998887643
No 161
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.16 E-value=1.2e-10 Score=103.78 Aligned_cols=99 Identities=12% Similarity=0.267 Sum_probs=77.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---C-------CCeEEEeCCCCCC--------CC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---N-------GNLKYVGGNMFEA--------IP- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~-------~~i~~~~~d~~~~--------~~- 257 (365)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ . ++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999999 888888765 1 2599999999874 22
Q ss_pred -CceEEEeccccc----------------cCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 -PADAVLIKCVLH----------------NWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 -~~D~i~~~~vlh----------------~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.||+|++.-..+ |........+++.+.+.|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 499999973332 22222357889999999999 8988875
No 162
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.16 E-value=7.4e-11 Score=103.24 Aligned_cols=98 Identities=15% Similarity=0.290 Sum_probs=79.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC-----CCceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI-----PPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-----~~~D~i~~ 264 (365)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 45678999999999999999999888999999999 888888775 358999999998732 35999997
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
... ......+++++.+.|+| ||.|++-+..+
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLY 179 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence 543 22346789999999999 78776655443
No 163
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=5.8e-11 Score=105.03 Aligned_cols=99 Identities=11% Similarity=0.200 Sum_probs=80.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CC---CCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AI---PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~---~~~D~i 262 (365)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ .. ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999988 889999999 888888774 3589999999876 22 259999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
++.. +.+....+|+++.++|+| ||.|++.+....
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 9854 233446789999999999 888877665443
No 164
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.15 E-value=1.6e-10 Score=101.29 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------CCCeEEEeCCCCC--C--CC--Cc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------NGNLKYVGGNMFE--A--IP--PA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~--~--~~--~~ 259 (365)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 5567999999999999999999999999999999 888776541 4689999999986 2 33 48
Q ss_pred eEEEeccccccCCh--hH----HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 260 DAVLIKCVLHNWND--EE----CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 260 D~i~~~~vlh~~~~--~~----~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
|.|++.....+... .. ...+|++++++|+| ||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 99987543221110 00 13689999999999 89888764
No 165
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.15 E-value=3.2e-10 Score=96.58 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=77.5
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCC--CCeEEEeechHHHHhcccCCCeEEEeCCCCC-C-----------
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP--HIECTVFDQPHVVADLKSNGNLKYVGGNMFE-A----------- 255 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~----------- 255 (365)
+.+.+. .+.++.+|||||||+|.++..+++.+| +.+++++|+.++. ...+++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 344443 246678999999999999999999988 6899999995431 24679999999987 3
Q ss_pred --------------CC--CceEEEeccccccCC----hhH-----HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 256 --------------IP--PADAVLIKCVLHNWN----DEE-----CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 256 --------------~~--~~D~i~~~~vlh~~~----~~~-----~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++ .||+|++...+|+.. +.. ..++|++++++|+| ||++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 24 599999988776532 211 13489999999999 88887743
No 166
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.15 E-value=2e-10 Score=95.31 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=78.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCC-C--------CC--CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFE-A--------IP--PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~--------~~--~~D~i~~~ 265 (365)
..+..+|||+|||+|.++..+++.+ |+.+++++|..++.+ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 4567899999999999999999984 778999999944432 3789999999987 3 44 49999999
Q ss_pred cccccCChhH---------HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEE---------CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~---------~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.++|+..... ...+++++.++|+| ||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF 137 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEe
Confidence 8888765431 15889999999999 899888665
No 167
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.14 E-value=1.6e-10 Score=104.15 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=76.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC-Cc---eEEEec-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-PA---DAVLIK- 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-~~---D~i~~~- 265 (365)
.+..+|||+|||+|.++..++.. |+.+++++|+ +.+++.+++ .++++++.+|++++.+ .| |+|+++
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 45679999999999999999999 9999999999 888888875 3469999999998654 58 999996
Q ss_pred -----------cccccCChh------HHHHHHHHHH-HhcccCCCCcEEEE
Q 017835 266 -----------CVLHNWNDE------ECVKILKNCK-KAIAINGKAGKVII 298 (365)
Q Consensus 266 -----------~vlh~~~~~------~~~~~L~~i~-~~L~p~~~gG~lli 298 (365)
.+. |.+.. +-..+++++. +.++| ||.+++
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 233 22221 1137899999 99999 888776
No 168
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.14 E-value=1.5e-10 Score=101.35 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=80.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC---
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--- 257 (365)
..+++.+. ..++.+|||||||+|.++..+++..+ .+++++|. +.+++.+++ ..++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 33444454 56788999999999999999999987 89999998 888887764 2469999999855544
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++..+++++.+ ++.+.|+| ||++++.-.
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 3999999999998774 57889999 888887654
No 169
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.14 E-value=2.3e-10 Score=107.34 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=81.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC-CC--CceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA-IP--PADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~-~~--~~D~i~~~~vlh~ 270 (365)
++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+. .+ .||+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 569999999 888888775 23589999999983 33 5999999999987
Q ss_pred ---CChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 271 ---WNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 271 ---~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
...+...++++++++.|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3455668999999999999 89988864
No 170
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.13 E-value=3.9e-10 Score=101.61 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=74.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhccc-C---------------CCeEEEeCCCCCC---C
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ--PHVVADLKS-N---------------GNLKYVGGNMFEA---I 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~-~---------------~~i~~~~~d~~~~---~ 256 (365)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . .+++++..|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3466899999999999999888763 348999998 577776653 1 3788886665441 1
Q ss_pred ------CCceEEEeccccccCChhHHHHHHHHHHHhcc---cCCCCcEEEEE
Q 017835 257 ------PPADAVLIKCVLHNWNDEECVKILKNCKKAIA---INGKAGKVIII 299 (365)
Q Consensus 257 ------~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~---p~~~gG~lli~ 299 (365)
..||+|++..++||.++. ..+++.+.++|+ | ++||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~--~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAH--DALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGH--HHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHHH--HHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 359999999999876554 789999999999 7 346877663
No 171
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.13 E-value=1.9e-10 Score=100.66 Aligned_cols=98 Identities=10% Similarity=0.258 Sum_probs=81.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C---CCceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I---PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~---~~~D~i~ 263 (365)
..++.+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+. . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 45678999999999999999999999999999999 888888775 25799999999872 2 3599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+....+ ....+|+++.+.|+| ||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence 977654 346889999999999 88888765443
No 172
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.13 E-value=1.7e-10 Score=101.20 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=77.2
Q ss_pred CCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCC--C---C--CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA--I---P--PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~--~---~--~~D~i~~~~ 266 (365)
+..+|||||||+|..+..|++. +|+.+++++|+ +.+++.++. ..+|+++.+|+.+. + . .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4579999999999999999997 78899999999 888887764 57899999999873 1 2 499998865
Q ss_pred ccccCChhHHHHHHHHHHH-hcccCCCCcEEEEEee
Q 017835 267 VLHNWNDEECVKILKNCKK-AIAINGKAGKVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~-~L~p~~~gG~lli~e~ 301 (365)
. |. ....+|+++.+ .|+| ||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 42 33678999997 9999 899888665
No 173
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.13 E-value=2.5e-10 Score=100.58 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=79.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------~~~ 259 (365)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 35678999999999999999999886 789999999 777776664 4689999999876 2 2 469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
|+|++... ......+|+++.++|+| ||.|++-+..+..
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence 99988643 33446789999999999 7877776665543
No 174
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.12 E-value=2.8e-10 Score=104.36 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=81.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---P 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~ 257 (365)
.+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ ..+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3444455 56788999999999999999999877 478999999 888888774 356999999998732 3
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++..++|+++ +++.+.|+| ||++++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 599999999999887 357889999 898888753
No 175
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.12 E-value=1.8e-10 Score=104.54 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=78.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CCC--CceEEEeccccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AIP--PADAVLIKCVLH 269 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh 269 (365)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..|++++.+|..+ ..+ .||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 899998875 4689999999876 333 599999865444
Q ss_pred cCChhH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 270 NWNDEE--CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 270 ~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
...... ..+++++++++|+| ||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 322221 26899999999999 787776554
No 176
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.12 E-value=1.3e-10 Score=101.06 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=80.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~------~~~ 259 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+. . ..|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 35678999999999999999999987 789999999 888888774 35799999998662 1 469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
|+|++... ......+++++.++|+| ||.|++.+..+.
T Consensus 142 D~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 99996542 33457789999999999 888887766554
No 177
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.11 E-value=2.9e-10 Score=101.62 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=79.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEeccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~ 273 (365)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.+..+|+.+ +++ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4678999999999999999999988899999999 888888876 5788999999876 444 59999986653
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
..+++++++|+| ||++++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 248899999999 99999987654
No 178
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.11 E-value=4.4e-10 Score=104.01 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=76.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 566789999999999999998887 4469999999558777764 2789999999987 555 4999998764
Q ss_pred cccC-ChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 268 LHNW-NDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 268 lh~~-~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.+.+ .......+|+++.++|+| ||+++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 3332 223346799999999999 88876
No 179
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.10 E-value=2e-10 Score=107.85 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=80.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vl 268 (365)
..++.+|||||||+|.++..+++.. ..+++++|...+++.+++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999873 349999999777777664 4679999999987 554 59999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 269 HNWND-EECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 269 h~~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|.... .....+++++.+.|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 66543 3356789999999999 8888765543
No 180
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.10 E-value=1.3e-10 Score=107.76 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=75.0
Q ss_pred cCCCeEEEecCC------ccHHHHHHHHH-CCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CC--------CCceE
Q 017835 199 EGLNTLVDVGGG------TGTLASAIAKK-FPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AI--------PPADA 261 (365)
Q Consensus 199 ~~~~~iLDiG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~--------~~~D~ 261 (365)
.+..+||||||| +|..+..+++. +|+.+++++|+ +.+. ....+++++.+|+.+ ++ ..||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 66666666665 69999999999 6652 236799999999988 33 35999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|++.. .|++.+ ..+.|++++++||| ||.+++.|..
T Consensus 292 Visdg-sH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDG-SHINAH--VRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEECS-CCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEECC-cccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence 99864 566544 47899999999999 8888887765
No 181
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.09 E-value=1.4e-10 Score=101.30 Aligned_cols=149 Identities=13% Similarity=0.025 Sum_probs=89.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeC-CCC----CCCC--Cc
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGG-NMF----EAIP--PA 259 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~-d~~----~~~~--~~ 259 (365)
.+++.+. ....+.+|||||||+|.++..+++.. ..+++++|+ +.+++.+.+ ..++..... ++. ...+ .+
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 3444454 12346799999999999999999873 349999999 788777554 344332211 111 1122 24
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh-ccCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV-LVKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~t~~e~~ 338 (365)
|.+.+..++.++ ..+|++++++|+| ||+++++. .+. +.......+-.-.. .......+.+++.
T Consensus 105 d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~ 168 (232)
T 3opn_A 105 SFTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVL 168 (232)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHH
T ss_pred CEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHH
Confidence 555555555443 5689999999999 99998852 111 00000000000000 0001123789999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
++++++||++..+...+
T Consensus 169 ~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 169 KTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHTEEEEEEEECS
T ss_pred HHHHHCCCEEEEEEEcc
Confidence 99999999988876553
No 182
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.09 E-value=1.5e-10 Score=107.01 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=79.2
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-----------------CCCeEEEeC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-----------------NGNLKYVGG 250 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~i~~~~~ 250 (365)
++..+. ..++.+|||||||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+
T Consensus 97 ~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 97 ILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 445555 677889999999999999999998 57789999999 888887764 158999999
Q ss_pred CCCCC---CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 251 NMFEA---IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 251 d~~~~---~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+.+. ++ .||+|++.. +.+ ..+++++.++|+| ||++++....
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~~~~ 221 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVYVVN 221 (336)
T ss_dssp CTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEEESS
T ss_pred ChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEEeCC
Confidence 99873 33 499999843 222 2378999999999 8999887653
No 183
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.09 E-value=7.8e-10 Score=101.88 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=75.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 456789999999999999988886 4568999999667777664 3689999999987 555 4999999865
Q ss_pred cccCC-hhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 268 LHNWN-DEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 268 lh~~~-~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.+++. ......+++++.++|+| ||.++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 142 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence 55432 22346789999999999 88876
No 184
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.08 E-value=1.8e-10 Score=101.62 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------------CCCeEEEeCCCCCC----CC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------------NGNLKYVGGNMFEA----IP- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~~----~~- 257 (365)
.+++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999999999999999998 777776642 25899999999872 32
Q ss_pred -CceEEEeccccccCChhHH-----------HHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 -PADAVLIKCVLHNWNDEEC-----------VKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~-----------~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+|.|++. ++++.. ..+++++.++|+| ||.|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 37777643 233311 3799999999999 8888884
No 185
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.08 E-value=3.7e-10 Score=102.17 Aligned_cols=99 Identities=15% Similarity=0.253 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCC----CCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAI----PPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~----~~~D~i 262 (365)
.+..+|||||||+|..+..+++..+..+++++|+ +.+++.+++ ..|++++.+|..+.. ..||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4568999999999999999999877889999999 888888764 358999999988732 259999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWNDEEC--VKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~~~~~--~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++....+.-+.... .+++++++++|+| ||.+++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCC---CCEEEEec
Confidence 99654432222222 6799999999999 78777754
No 186
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.07 E-value=1.1e-09 Score=100.14 Aligned_cols=103 Identities=12% Similarity=0.170 Sum_probs=79.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C-CC-CceEEEec-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A-IP-PADAVLIK- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~~-~~D~i~~~- 265 (365)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56788999999999999999999875 579999999 888887764 3579999999987 2 23 59999983
Q ss_pred -----ccccc-------CChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 -----CVLHN-------WNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 -----~vlh~-------~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.++++ |+..+ ..++|+++.+.|+| ||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 23332 22221 15899999999999 89888866544
No 187
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.07 E-value=2.1e-10 Score=94.95 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=72.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC-------CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP-------PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-------~~D~i~~~~ 266 (365)
++.+|||+|||+|.++..+++..+. ++++|. +.+++.+++ ..+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999998654 999999 888888775 2289999999876211 599999988
Q ss_pred ccccCChhHHHHHHHHHH--HhcccCCCCcEEEEEeee
Q 017835 267 VLHNWNDEECVKILKNCK--KAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~--~~L~p~~~gG~lli~e~~ 302 (365)
++| -..+ ++++.+. ++|+| ||.+++....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPK 149 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCC
Confidence 776 2222 3455555 99999 8887775543
No 188
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.07 E-value=2.4e-10 Score=95.41 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=75.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C-CCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I-PPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~-~~~D~i~~~~ 266 (365)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45689999999999999999887 5679999999 888888775 24799999998772 2 3599999987
Q ss_pred ccccCChhHHHHHHHHHH--HhcccCCCCcEEEEEeee
Q 017835 267 VLHNWNDEECVKILKNCK--KAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~--~~L~p~~~gG~lli~e~~ 302 (365)
.+|. ....++++.+. ++|+| ||.+++....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDK 140 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECC
Confidence 6542 22355667776 89999 8888776544
No 189
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.06 E-value=1.3e-09 Score=95.61 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=78.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C---------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I--------- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~--------- 256 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+ + .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 45678999999999999999999987 789999999 888887764 2469999999865 2 1
Q ss_pred --------CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 257 --------PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 257 --------~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
..||+|++.... +....+|+++.+.|+| ||++++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 459999987543 3446789999999999 88888766544
No 190
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.06 E-value=4.5e-10 Score=97.47 Aligned_cols=95 Identities=8% Similarity=0.147 Sum_probs=75.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------C-CCeEEEeCCCCC---CC--CCceEEEec
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------N-GNLKYVGGNMFE---AI--PPADAVLIK 265 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~---~~--~~~D~i~~~ 265 (365)
..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ . ++++++.+|..+ .. ..||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 889999999 888888774 3 589999999876 23 259999886
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
... .....+++++.+.|+| ||.|++-+..+
T Consensus 137 ~~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRR---GGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence 432 2336789999999999 77777644433
No 191
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.04 E-value=3e-10 Score=97.70 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=77.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--CC-CCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--AI-PPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~-~~~D~i~~~~ 266 (365)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 4568999999999999999999987 889999999 888888774 3579999999875 22 1299998863
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
. ......+++++.++|+| ||.+++.+...
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 2 22346889999999999 88877755544
No 192
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.04 E-value=1.8e-09 Score=100.51 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=83.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC--C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI--P 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~--~ 257 (365)
.++.... ..++.+|||+|||+|.+++.++... |+.+++++|+ +.+++.+++ ..+++++.+|+.+ +. +
T Consensus 194 ~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~ 271 (354)
T 3tma_A 194 ALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP 271 (354)
T ss_dssp HHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred HHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence 3444444 5678899999999999999999987 8899999999 888888875 2389999999988 33 3
Q ss_pred CceEEEeccccccC-C-hhH----HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNW-N-DEE----CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~-~-~~~----~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++.-..+.. . ... ...+++++++.|+| ||+++++..
T Consensus 272 ~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t~ 318 (354)
T 3tma_A 272 EVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLTL 318 (354)
T ss_dssp CCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEES
T ss_pred CCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 58999996544321 1 111 26789999999999 899998643
No 193
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.04 E-value=5.6e-10 Score=93.81 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=74.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-------CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-------IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-------~~~~D~i~ 263 (365)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4568999999999999998887 45679999999 888888774 25799999998772 23599999
Q ss_pred eccccccCChhHHHHHHHHH--HHhcccCCCCcEEEEEeee
Q 017835 264 IKCVLHNWNDEECVKILKNC--KKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i--~~~L~p~~~gG~lli~e~~ 302 (365)
+...++.... ...++.+ .++|+| ||.+++....
T Consensus 122 ~~~~~~~~~~---~~~~~~l~~~~~L~~---gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYAKQEI---VSQLEKMLERQLLTN---EAVIVCETDK 156 (187)
T ss_dssp ECCCGGGCCH---HHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred ECCCCCchhH---HHHHHHHHHhcccCC---CCEEEEEeCC
Confidence 9877553333 3455555 788999 8888776543
No 194
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.03 E-value=8.7e-10 Score=95.12 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=78.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~ 270 (365)
.+..+|||||||+|-++..+. |..+++++|+ +.+++.++. ..+.++...|... +.+ .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 567899999999999998877 8899999999 889998875 5677889999998 444 4999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.+.+....+ ++.+.|++ ++++|.=+
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcC
Confidence 9877655555 88889998 45555444
No 195
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.02 E-value=4.8e-10 Score=97.59 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=79.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~------~~~ 259 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ ..+++++.+|+.+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999887 789999999 888887764 36899999998652 1 469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|+|++... ......+++++.+.|+| ||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 99998543 33346789999999999 88887766544
No 196
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.02 E-value=4.4e-10 Score=96.05 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=75.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------C--CCeEEEeCCCCC--CC---CC-ceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------N--GNLKYVGGNMFE--AI---PP-ADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~i~~~~~d~~~--~~---~~-~D~i~~ 264 (365)
++.+|||+|||+|.++..++.... .+++++|+ +.+++.+++ . .+++++.+|+.+ +. .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 567999999999999998777643 58999999 888888875 2 689999999876 21 36 999999
Q ss_pred ccccccCChhHHHHHHHHH--HHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNC--KKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i--~~~L~p~~~gG~lli~e~~~ 303 (365)
...+| ..+ ..++++.+ .++|+| ||.+++.....
T Consensus 132 ~~~~~-~~~--~~~~l~~~~~~~~Lkp---gG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-FNL--AEQAISLLCENNWLKP---NALIYVETEKD 166 (201)
T ss_dssp CCCSS-SCH--HHHHHHHHHHTTCEEE---EEEEEEEEESS
T ss_pred CCCCC-Ccc--HHHHHHHHHhcCccCC---CcEEEEEECCC
Confidence 87754 333 36788888 567999 88887765443
No 197
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.02 E-value=4.3e-10 Score=95.28 Aligned_cols=103 Identities=10% Similarity=0.245 Sum_probs=75.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCC------------
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAI------------ 256 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~------------ 256 (365)
++.+.+. .++++.+|||+|||+|.++..+++. ..+++++|+.++ ....+++++.+|+.+..
T Consensus 15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 4555554 2467899999999999999999988 779999998443 12468999999998732
Q ss_pred --CCceEEEeccccc---cCC------hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 --PPADAVLIKCVLH---NWN------DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 --~~~D~i~~~~vlh---~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..||+|++..... ++. .+.+..+|+.+.++|+| ||++++..+
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~ 140 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF 140 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence 3699999853221 111 12245788999999999 888876543
No 198
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.02 E-value=2.1e-09 Score=93.36 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=77.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCC----
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-----PHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAI---- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~---- 256 (365)
..++.+|||||||+|.++..+++.. |..+++++|. +.+++.+++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4667899999999999999999986 5679999999 888887764 258999999998743
Q ss_pred ---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 ---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 ---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..||+|++...++++ ++++.+.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence 259999999998864 3678899999 898888754
No 199
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.02 E-value=7e-10 Score=96.58 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=76.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCCC--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP------HIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~~-- 257 (365)
..++.+|||||||+|.++..+++..+ ..+++++|. +.+++.+++ ..+++++.+|..++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 46678999999999999999998754 369999998 888887764 2589999999987543
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.||+|++...++++. +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 599999999998765 568899999 88888754
No 200
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.01 E-value=9e-10 Score=93.36 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHHHhcccCCCeEEE-eCCCCCC---------CC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH---------IECTVFDQPHVVADLKSNGNLKYV-GGNMFEA---------IP- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~i~~~-~~d~~~~---------~~- 257 (365)
+.++.+|||||||+|.++..+++.++. .+++++|+.++. ...+++++ .+|+.+. .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 467789999999999999999999765 799999985421 13678899 9998762 22
Q ss_pred -CceEEEecccccc----CChhH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 -PADAVLIKCVLHN----WNDEE-----CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 -~~D~i~~~~vlh~----~~~~~-----~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++...+|. ..+.. ...+++++.++|+| ||++++..+
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 5999998654432 12221 14789999999999 898888654
No 201
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.01 E-value=1.5e-09 Score=97.52 Aligned_cols=101 Identities=13% Similarity=0.307 Sum_probs=81.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCC-CC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-AI 256 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~ 256 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+|+.+ +.
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 4455555 677889999999999999999986 57889999999 888877764 2589999999987 34
Q ss_pred C--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 P--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 ~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+ .||+|++ +.+++ .++|+++.++|+| ||++++..+
T Consensus 168 ~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~ 204 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVA 204 (280)
T ss_dssp CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEES
T ss_pred CCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeC
Confidence 3 5999998 23444 4789999999999 899998775
No 202
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.01 E-value=3.1e-10 Score=112.29 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=81.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----C--CCeEEEeCCCCC---CCC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----N--GNLKYVGGNMFE---AIP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~i~~~~~d~~~---~~~--~~D~i~~~~ 266 (365)
.++.+|||||||+|.++..|++. +.+|+|+|. +.+++.|+. . .+|++.++++.+ +.+ .||+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999998 789999999 888888774 2 368999998876 232 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+|||.+++....-+.++.+.|++ +++.+++..+.
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~ 176 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAV 176 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCC
T ss_pred chhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecc
Confidence 99999988655556678888888 67777766544
No 203
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.01 E-value=2.3e-11 Score=106.91 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=96.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC-CCceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI-PPADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-~~~D~i~~~~vl 268 (365)
.++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +. ..||+|++..++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 36789999999999999999987 489999999 888888775 1589999999987 32 369999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
|+.++.. ..+.+++++|+| ||.+++ +......... . ..-.+....+++.+++...|...
T Consensus 155 ~~~~~~~--~~~~~~~~~L~p---gG~~i~-~~~~~~~~~~--------~-------~~lp~~~~~~~~~~~l~~~g~~~ 213 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSP---DGFEIF-RLSKKITNNI--------V-------YFLPRNADIDQVASLAGPGGQVE 213 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSS---CHHHHH-HHHHHHCSCE--------E-------EEEETTBCHHHHHHTTCTTCCEE
T ss_pred CCcchhh--hHHHHHHhhcCC---cceeHH-HHHHhhCCce--------E-------EECCCCCCHHHHHHHhccCCCEE
Confidence 9877653 367789999999 887443 3211000000 0 01122336778888888777665
Q ss_pred ceEEEcCCc
Q 017835 349 YKITDVLGV 357 (365)
Q Consensus 349 ~~~~~~~~~ 357 (365)
+......+.
T Consensus 214 i~~~~~~~~ 222 (241)
T 3gdh_A 214 IEQNFLNNK 222 (241)
T ss_dssp EEEEEETTE
T ss_pred EEehhhcCc
Confidence 555555544
No 204
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.00 E-value=6.2e-10 Score=98.29 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=78.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C-------CC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I-------PP 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------~~ 258 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++|+++.+|..+ + . ..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34668999999999999999999987 789999999 888887774 3589999999875 2 2 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
||+|++... ......+++++.+.|+| ||.|++-+..+
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 999998643 22347889999999999 88887755444
No 205
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.99 E-value=1.9e-09 Score=96.59 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=80.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-CC-CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-IP-PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-~~-~~D~i~~~~vl 268 (365)
+.++.+|||+|||+|.++..+++..+..+++++|. +.+++.+++ ..++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 888888875 35789999999874 22 59999987543
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
...++++++.+.|+| ||.+++.+....
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~ 223 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAE 223 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCcc
Confidence 235678999999999 898888776543
No 206
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.99 E-value=3.5e-09 Score=93.13 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=80.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC-C--C
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI-P--P 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-~--~ 258 (365)
++..++ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..++++..+|+.+.. + .
T Consensus 83 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 83 IALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 344444 567889999999999999999998 779999998 888887764 268999999998855 4 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
||+|++. .+++ ..+++++.++|+| ||++++..+.
T Consensus 159 ~D~v~~~-----~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VREP--WHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred ccEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 9999972 3333 4679999999999 8999987753
No 207
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.98 E-value=9.9e-10 Score=97.84 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=71.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc--CC------CeEEE--eCCCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS--NG------NLKYV--GGNMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~i~~~--~~d~~~-~~~~~D~i~~~~ 266 (365)
+.++.+|||||||+|.++..+++. .+++++|+.++...+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 567889999999999999998887 68999999545433322 11 68888 899987 433599999976
Q ss_pred ccccCChh----H-HHHHHHHHHHhcccCCCCc--EEEEEee
Q 017835 267 VLHNWNDE----E-CVKILKNCKKAIAINGKAG--KVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~----~-~~~~L~~i~~~L~p~~~gG--~lli~e~ 301 (365)
. ++.... . ...+|+.+.++|+| || .+++-.+
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence 6 433221 1 12488999999999 89 7777443
No 208
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.98 E-value=2.8e-09 Score=92.55 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=76.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCC---CCceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAI---PPADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~---~~~D~ 261 (365)
..++.+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 6679999999 888887763 248999999987632 25999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|++...++++. +++.+.|+| ||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence 99998887654 578899999 898888654
No 209
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.97 E-value=9.5e-10 Score=98.52 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=71.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc--CC------CeEEE--eCCCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS--NG------NLKYV--GGNMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~i~~~--~~d~~~-~~~~~D~i~~~~ 266 (365)
++++.+|||||||+|.++..+++. .+++++|+.++...+++ .. +++++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 567889999999999999999887 58999999545433322 11 68898 899876 433599999986
Q ss_pred ccccCChh----H-HHHHHHHHHHhcccCCCCc--EEEEEee
Q 017835 267 VLHNWNDE----E-CVKILKNCKKAIAINGKAG--KVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~----~-~~~~L~~i~~~L~p~~~gG--~lli~e~ 301 (365)
. ++...+ . ...+|+.+.++|+| || .+++..+
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence 6 433221 1 12479999999999 89 7777443
No 210
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.96 E-value=8.6e-10 Score=99.51 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=77.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~ 258 (365)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 44555555 5677899999999999999999984 58999999 888887764 1579999999998 6778
Q ss_pred ceEEEeccccccCChhHHHHHHH--------------HH--HHhcccCCCCcEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILK--------------NC--KKAIAINGKAGKVI 297 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~--------------~i--~~~L~p~~~gG~ll 297 (365)
||+|+++ ..++|+.+...++|. ++ +++++| ||+++
T Consensus 94 fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~y 144 (285)
T 1zq9_A 94 FDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKLY 144 (285)
T ss_dssp CSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTTC
T ss_pred hcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCccc
Confidence 9998884 444566655555553 23 368899 88653
No 211
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.96 E-value=1.3e-09 Score=98.15 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=77.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCC---CC-CceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEA---IP-PADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~~-~~D~i~ 263 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..|++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 888887764 36899999998762 23 599999
Q ss_pred eccccccCChhHH--HHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDEEC--VKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~~~--~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+....+..+.... .+++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8654432222222 5899999999999 7887775
No 212
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.96 E-value=8.6e-10 Score=96.42 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=78.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CC------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AI------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~------~~~ 259 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+ .. ..|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34567999999999999999999987 789999999 888887764 3579999999754 11 459
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
|+|++... .+....+++++.+.|+| ||.|++.+..+.
T Consensus 150 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~ 186 (232)
T 3cbg_A 150 DLIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH 186 (232)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred CEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence 99998653 23457889999999999 788777665443
No 213
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.96 E-value=1.6e-09 Score=95.09 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=77.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C-------CC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I-------PP 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------~~ 258 (365)
..+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++++++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 35678999999999999999999987 789999999 888887764 3579999999876 2 2 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
||+|++.. +......+++++.+.|+| ||.|++-+..
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL 183 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence 99999853 233457899999999999 7776664443
No 214
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.96 E-value=4.2e-09 Score=98.06 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=72.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh 269 (365)
-++++|||||||+|.++...++.. ..+++++|..++++.|++ .++|+++.+|+.+ +.| .+|+|++-..-+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred cCCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence 346799999999999988766653 358999998667776664 5789999999988 666 599998854433
Q ss_pred cCC-hhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 270 NWN-DEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 270 ~~~-~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.+. ......++....+.|+| ||.++-
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp---~G~~iP 187 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKE---GGLLLP 187 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEE---EEEEES
T ss_pred cccccchhhhHHHHHHhhCCC---CceECC
Confidence 332 22456788888899999 777653
No 215
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.94 E-value=1.6e-09 Score=99.02 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=78.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCC----CCCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEA----IPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~----~~~~D~i 262 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 888887663 35899999998762 2359999
Q ss_pred Eecccccc---CChhH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHN---WNDEE--CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~---~~~~~--~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++....|. -+... ..+++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99766543 11111 36889999999999 88888763
No 216
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.94 E-value=1.4e-09 Score=97.52 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=76.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC--C-C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE--A-I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-~~~D~i~ 263 (365)
.+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ + . ..||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3468999999999999999998777789999999 888887764 3689999999876 2 2 3599999
Q ss_pred eccccccCChhH--HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDEE--CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+....+..+... ..+++++++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 965443222111 25789999999999 7777664
No 217
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.94 E-value=2.7e-09 Score=91.15 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=73.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--CCC--CceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--AIP--PADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~~~--~~D~i~~~~vl 268 (365)
++.+|||+|||+|.++..++.... .+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 468999999999999998877643 48999999 889888875 2589999999876 332 59999998775
Q ss_pred ccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 017835 269 HNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIK 302 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~ 302 (365)
| ... ..++++.+.+ +|+| ||.+++....
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 4 333 3567788866 4999 7877765543
No 218
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.93 E-value=1.1e-08 Score=98.20 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=81.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC--CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP--PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~--~~D~i~~ 264 (365)
..++.+|||+|||+|..+..++...++ .+++++|+ +..++.+++ ..+++++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 567789999999999999999999877 79999999 777777654 3579999999987 2 43 4999996
Q ss_pred ------ccccccCChh-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 265 ------KCVLHNWNDE-------EC-------VKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 265 ------~~vlh~~~~~-------~~-------~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
..++++.++. +. .++|+++.+.|+| ||+|++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 3445543332 11 5789999999999 899988776553
No 219
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.93 E-value=1.5e-09 Score=99.07 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=73.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCC----CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEA----IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~----~~~~D~i~ 263 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..|++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999888889999999 888887764 35899999998762 23599999
Q ss_pred eccccccCChh-HH--HHHHHHHHHhcccCCCCcEEEEEe
Q 017835 264 IKCVLHNWNDE-EC--VKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 264 ~~~vlh~~~~~-~~--~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+...- ++... .. .+++++++++|+| ||.+++..
T Consensus 187 ~d~~~-~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSD-PVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCC-CCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 85543 33322 11 6899999999999 77777653
No 220
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.93 E-value=1.8e-09 Score=99.42 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=76.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CC--CCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AI--PPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~--~~~D~i 262 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|+.+ .. ..||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 888887764 3589999999875 23 259999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCVLHNWNDEE--CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~vlh~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++....+....+. ..+++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854421111111 36899999999999 7877775
No 221
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.92 E-value=1.7e-09 Score=97.30 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=74.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------------CCCeEEEeCCCCCC---CCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------------NGNLKYVGGNMFEA---IPP 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~~---~~~ 258 (365)
.++.+|||||||+|..+..+++. |..+++++|+ +.+++.+++ ..+++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999998 8889999999 888877653 35799999997652 235
Q ss_pred ceEEEeccccccCChhH--HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 259 ADAVLIKCVLHNWNDEE--CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
||+|++....+..+... ..+++++++++|+| ||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 99999865543222122 26789999999999 7877765
No 222
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.92 E-value=1.7e-09 Score=98.42 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=74.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC--C-C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE--A-I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-~~~D~i~ 263 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+ + . ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 888887763 4689999999865 2 2 3599999
Q ss_pred eccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 264 IKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 264 ~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 86544322211 125789999999999 78777654
No 223
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.92 E-value=2e-09 Score=98.71 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=75.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCC---C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEA---I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~-~~~D~i~ 263 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+. . ..||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878889999999 888887764 25899999998762 2 3599999
Q ss_pred eccccccCCh-hHH--HHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWND-EEC--VKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~-~~~--~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+...- ++.. ... .+++++++++|+| ||.+++.
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 86432 2221 111 6899999999999 7777764
No 224
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.91 E-value=1.8e-09 Score=98.20 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=69.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHHhcc--c--CCCeEEEeC-CCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-----PHVVADLK--S--NGNLKYVGG-NMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~--~~~i~~~~~-d~~~-~~~~~D~i~~~~ 266 (365)
++++.+|||||||+|.++..+++. .+++++|. +.+++... . .++++++.+ |+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 567789999999999999999887 47999997 43333222 1 257999999 8887 444699999976
Q ss_pred ccc---cCChhH-HHHHHHHHHHhcccCCCCcEEEE
Q 017835 267 VLH---NWNDEE-CVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 267 vlh---~~~~~~-~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.++ +..+.. ...+|+.++++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 553 222222 22689999999999 887776
No 225
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.90 E-value=5.3e-09 Score=89.03 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=67.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCCCCceEEEeccccccCChhHH
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+-...||+|++...+|++.+...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 45689999999999999999887 4457999999 889988876 33899999999873246999999999999876544
Q ss_pred HHHHHHHHHhc
Q 017835 277 VKILKNCKKAI 287 (365)
Q Consensus 277 ~~~L~~i~~~L 287 (365)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 57788887776
No 226
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.89 E-value=5.7e-09 Score=93.54 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=78.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C------CCCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A------IPPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~------~~~~D~i 262 (365)
..++.+|||+|||+|..+..+++..++ .+++++|. +.+++.+++ ..+++++.+|+.+ + ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 567789999999999999999998876 79999999 777877664 3489999999876 2 2359999
Q ss_pred Eeccc------ccc---CCh-------hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 263 LIKCV------LHN---WND-------EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 263 ~~~~v------lh~---~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
++.-. ++. |+. ....++|+++.+.|+| ||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCC
Confidence 98622 221 111 1226899999999999 88888876544
No 227
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.86 E-value=2.3e-08 Score=85.40 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=70.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCCCceEEEeccccccCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIPPADAVLIKCVLHNWN 272 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~ 272 (365)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .-+++++.+|+.+-...||+|++...+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 456899999999999999998873 348999999 888888775 1179999999987323699999998888876
Q ss_pred hhHHHHHHHHHHHhc
Q 017835 273 DEECVKILKNCKKAI 287 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L 287 (365)
......+++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 544467888888876
No 228
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.86 E-value=3.9e-09 Score=95.65 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=73.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC--C-C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE--A-I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-~~~D~i~ 263 (365)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|+.+ + . ..||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3458999999999999999999878889999999 888887664 3689999999765 2 2 2599999
Q ss_pred eccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+...-+..... ...+++++++++|+| ||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 85332201111 126889999999999 7877774
No 229
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.85 E-value=6.3e-09 Score=92.51 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=73.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCCCCCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEAIPPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~~~~~D~i~~~~v 267 (365)
....+|||||||+|..+..+++. + .+++++|+ +.+++.+++ .+|++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 34589999999999999999988 7 89999999 889988874 258999999987733569999985
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+++ ..+++++++.|+| ||.+++.
T Consensus 147 ---~~dp--~~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPD--IHRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCC--HHHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCCh--HHHHHHHHHhcCC---CcEEEEE
Confidence 2444 3489999999999 7887774
No 230
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.82 E-value=2.9e-08 Score=92.96 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=89.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
.++.+|||+|||+|.++..++...+..+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++.-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 5678999999999999999999987779999999 889988875 2589999999988 443 5999999655
Q ss_pred cccCC-----hhH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 268 LHNWN-----DEE-CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 268 lh~~~-----~~~-~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
.+... .++ -.++++.++++| + |+++++.. +.+.+.+.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~----g~~~~i~~-------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E----KRGVFITT-------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E----EEEEEEES-------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C----CeEEEEEC-------------------------------CHHHHHHHH
Confidence 43221 111 267888999988 5 44444321 234556788
Q ss_pred HhcCCccceEEEc
Q 017835 342 FEAGFSDYKITDV 354 (365)
Q Consensus 342 ~~aGf~~~~~~~~ 354 (365)
.+.||+..+...+
T Consensus 340 ~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 340 AENGFEIIHHRVI 352 (373)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCEEEEEEEE
Confidence 8999998877666
No 231
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.81 E-value=2.3e-08 Score=89.30 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=89.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC--CCceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI--PPADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~--~~~D~i~~~~v 267 (365)
.+++.+|||+|||+|.+++.++... ..+++++|+ |..++.+++ .++++++.+|..+-. ..||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 4678999999999999999998873 568999999 888887774 578999999998732 35999987543
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
. ...++|..+.+.|+| ||.|.+.+.+..+... ....+.++++.++.|++
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~~----------------------~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEEeeecccccc----------------------hhHHHHHHHHHHHcCCc
Confidence 2 124678888899999 8888777665322111 11346677888899987
Q ss_pred cc
Q 017835 348 DY 349 (365)
Q Consensus 348 ~~ 349 (365)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 232
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.78 E-value=1.2e-08 Score=92.68 Aligned_cols=97 Identities=16% Similarity=0.314 Sum_probs=71.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~~~ 259 (365)
..+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 44555555 567789999999999999999987 568999999 888887764 2689999999988 56689
Q ss_pred eEEEeccccccCChhHHHHHH---------------HHHHHhccc
Q 017835 260 DAVLIKCVLHNWNDEECVKIL---------------KNCKKAIAI 289 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L---------------~~i~~~L~p 289 (365)
|+|++. ..+++..+...+++ ..+.++++|
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 999875 45557777666666 346677877
No 233
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.77 E-value=1.6e-08 Score=93.63 Aligned_cols=100 Identities=11% Similarity=0.183 Sum_probs=81.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-----IECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~~D~i~~~ 265 (365)
.+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++.++.+|.+++.+ .||+|++.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35679999999999999999988764 78999999 888887764 3378999999988543 59999999
Q ss_pred cccccCChhHH----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEEC----------------VKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~~----------------~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
-.+++++.++. ..+++++.+.|+| ||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 88777654432 2589999999999 898888764
No 234
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.75 E-value=4.1e-08 Score=93.85 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=77.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~-~~D~i~~~ 265 (365)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. +.++.+|..+ + .+ .||+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 567889999999999999999998765 69999999 888887764 34 8899999876 2 23 59999962
Q ss_pred ------ccc-------ccCChhHH-------HHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 ------CVL-------HNWNDEEC-------VKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ------~vl-------h~~~~~~~-------~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.++ ..|+.+.. .++|+++.+.|+| ||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence 122 22333222 6799999999999 88888766544
No 235
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.73 E-value=3e-08 Score=89.04 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=80.5
Q ss_pred ccCCCeEEEecC------CccHHHHHHHHHCC-CCeEEEeechHHHHhcccCCCeEE-EeCCCCC-CCC-CceEEEeccc
Q 017835 198 FEGLNTLVDVGG------GTGTLASAIAKKFP-HIECTVFDQPHVVADLKSNGNLKY-VGGNMFE-AIP-PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~i~~-~~~d~~~-~~~-~~D~i~~~~v 267 (365)
++++.+|||+|| |+|. ..+++..| +.+++++|+.+. . .++++ +.+|+.+ +.+ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---v---~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---V---SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---B---CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---C---CCCEEEEECccccCCccCcccEEEEcCC
Confidence 567889999999 4477 44566666 689999999433 1 47889 9999987 444 5999998643
Q ss_pred ccc--------CC-hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 268 LHN--------WN-DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 268 lh~--------~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
.+. .. ......+|++++++|+| ||++++..+... ...++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~l~ 181 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNADLY 181 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHHHH
Confidence 221 11 22345899999999999 888887543210 123666
Q ss_pred HHHHhcCCccceEE
Q 017835 339 KLFFEAGFSDYKIT 352 (365)
Q Consensus 339 ~ll~~aGf~~~~~~ 352 (365)
+++++.||..+++.
T Consensus 182 ~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 182 KLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHHHcCCcEEEEE
Confidence 77777788766555
No 236
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.73 E-value=3.7e-08 Score=93.71 Aligned_cols=97 Identities=7% Similarity=-0.011 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCC--CCceEEEeccccc-----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAI--PPADAVLIKCVLH----- 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~--~~~D~i~~~~vlh----- 269 (365)
.+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.+.. ..||+|++.-...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCcccc
Confidence 345699999999999999999886 6789999999 7777666 68999999998843 3599999952221
Q ss_pred -----cCChhHH-----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 017835 270 -----NWNDEEC-----------------VKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 270 -----~~~~~~~-----------------~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|++++.. ..+++++.+.|+| ||++.++-+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 1223221 2568999999999 898888765
No 237
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.73 E-value=3e-08 Score=87.27 Aligned_cols=89 Identities=10% Similarity=0.280 Sum_probs=64.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC-Cce
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP-PAD 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~-~~D 260 (365)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++ ..+
T Consensus 20 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 20 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 44555555 5677899999999999999999985 78999999 888888775 3689999999988 555 233
Q ss_pred EEEeccccccCChhHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L 280 (365)
..++++..++++.+...+++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l 115 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIV 115 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHH
T ss_pred eEEEEeCCcccCHHHHHHHH
Confidence 34555555555544434443
No 238
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.72 E-value=4.1e-08 Score=93.72 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=80.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC---CC--CceEEEec-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA---IP--PADAVLIK- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~~--~~D~i~~~- 265 (365)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 46778999999999999999999998889999999 777776654 33588999999873 33 59999962
Q ss_pred -----cccccCChh-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 -----CVLHNWNDE-------EC-------VKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 -----~vlh~~~~~-------~~-------~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.++++.++. +. .++|+++.+.|+| ||++++.+....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 344443331 11 4889999999999 899888776543
No 239
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.71 E-value=4.8e-08 Score=89.84 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=73.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CC-CeEEEeCCCCCC-------CCCceEEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NG-NLKYVGGNMFEA-------IPPADAVL 263 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~i~~~~~d~~~~-------~~~~D~i~ 263 (365)
++.+|||+|||+|.++..++... .+++++|+ +.+++.+++ .+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999863 49999999 888888774 22 599999999872 23599999
Q ss_pred eccccccC--------ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNW--------NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~--------~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.-..... ..+...++++++.++|+| ||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEEC
Confidence 94321110 122346899999999999 888776554
No 240
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.66 E-value=2.2e-07 Score=89.52 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC-CceEEEec--
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP-PADAVLIK-- 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~-~~D~i~~~-- 265 (365)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..+ + .+ .||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 788999999999999999999875 579999999 888877764 3579999999987 2 34 59999982
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 ----CVL-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ----~vl-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.++ .+|+.+. ..++|+++.++||| ||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccC
Confidence 222 2343322 24789999999999 89888876544
No 241
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.64 E-value=1.2e-07 Score=90.58 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=77.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~-~~D~i~~~ 265 (365)
..++.+|||+|||+|..+..++...+ ..+++++|+ +..++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 56788999999999999999998865 479999999 777777664 4579999999876 2 33 59999983
Q ss_pred c------cccc-------CChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 C------VLHN-------WNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ~------vlh~-------~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
- ++.. |+.+. ..++|+++.+.|+| ||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence 2 2211 21111 13889999999999 88888766544
No 242
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.63 E-value=1.2e-08 Score=89.77 Aligned_cols=104 Identities=14% Similarity=0.273 Sum_probs=76.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC---C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP---P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~---~ 258 (365)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 45556665 5677899999999999999999984 79999999 888887775 3579999999988 554 2
Q ss_pred ceEEEeccccccCChhHHHHHH--------------HHHHHhcccCCCCcEEEEEe
Q 017835 259 ADAVLIKCVLHNWNDEECVKIL--------------KNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L--------------~~i~~~L~p~~~gG~lli~e 300 (365)
| +++++.-++.+.+....++ +.+.++|+| ||++.++.
T Consensus 95 f--~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 95 Y--KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp E--EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred c--EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 5 3344444444444434443 568899999 88876653
No 243
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.59 E-value=1.6e-07 Score=84.67 Aligned_cols=88 Identities=13% Similarity=0.233 Sum_probs=67.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~ 259 (365)
..+++.+. ..++.+|||||||+|.++..|++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 44555555 567889999999999999999998 578999999 888888775 4799999999998 555 39
Q ss_pred eEEEeccccccCChhHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L 280 (365)
|+|+++. -++++.+-..++|
T Consensus 116 D~Iv~Nl-Py~is~pil~~lL 135 (295)
T 3gru_A 116 NKVVANL-PYQISSPITFKLI 135 (295)
T ss_dssp SEEEEEC-CGGGHHHHHHHHH
T ss_pred cEEEEeC-cccccHHHHHHHH
Confidence 9998654 3445554333333
No 244
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.58 E-value=1.4e-07 Score=87.01 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=75.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~D~i~~~~vlh~ 270 (365)
.++.+|||+|||+|.++.. ++ ...+++++|. +.+++.+++ .++++++.+|+.+....||+|++...-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 4678999999999999998 76 4779999999 888888775 258999999998754669999985321
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
...++++.+.+.|+| ||.+++.+...
T Consensus 269 ----~~~~~l~~~~~~L~~---gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEE---GGVIHYYTIGK 294 (336)
T ss_dssp ----TGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred ----hHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence 123789999999999 88888877654
No 245
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.58 E-value=3e-08 Score=93.18 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=73.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CC-CeEEEeCCCCCCC------C-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NG-NLKYVGGNMFEAI------P-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~i~~~~~d~~~~~------~-~~D~i 262 (365)
.++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++ .+ +++++.+|+++.. . .||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999863 238999999 888888775 22 8999999987621 2 59999
Q ss_pred Eecccc-----ccCCh--hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVL-----HNWND--EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vl-----h~~~~--~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++.-.. ++..+ ....++++.+.+.|+| ||.|++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 985332 12222 2335688899999999 77776654
No 246
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.58 E-value=1.3e-07 Score=89.18 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=74.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------C-C-CeEEEeCCCCCC-------CCCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------N-G-NLKYVGGNMFEA-------IPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-~i~~~~~d~~~~-------~~~~D~i 262 (365)
.++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++ . . +++++.+|+++. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999874 458999999 888888774 2 3 799999998872 1359999
Q ss_pred EeccccccCC-------hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWN-------DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~-------~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++.-.....+ .....+++.++.+.|+| ||.+++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 9863221110 13457889999999999 78777755
No 247
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.53 E-value=1.6e-07 Score=88.66 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=76.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------C-CCeEEEeCCCCCC-------CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------N-GNLKYVGGNMFEA-------IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~i~~~~~d~~~~-------~~~~D~i~ 263 (365)
.++.+|||+|||+|.++..++.. +..+++++|+ +.+++.+++ . ++++++.+|+++. ...||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 36789999999999999999986 3458999999 888888775 1 2899999998762 12599999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.-..+..+. ....++++++.+.|+| ||.+++...
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 336 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 336 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 8543322221 3456789999999999 888877764
No 248
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.52 E-value=1.9e-07 Score=87.71 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-------CCCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-------IPPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-------~~~~D~i~~~ 265 (365)
++.+|||+|||+|.++..++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 568999999 888888775 24599999998872 1259999985
Q ss_pred cccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
-..+..+. ....++++++.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 33222111 3346789999999999 888887664
No 249
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.49 E-value=1.6e-06 Score=80.55 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=92.9
Q ss_pred CCeEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechHHH--------Hhccc--------------CC
Q 017835 201 LNTLVDVGGGTGTLASAI--------AKKF-------PHIECTVFDQPHVV--------ADLKS--------------NG 243 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~~--------~~a~~--------------~~ 243 (365)
..+|+|+|||+|..+..+ .+++ |.+++..-|+|..- ...++ .-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999998876 3333 78889998985321 11110 01
Q ss_pred CeEEEeCCCCC-CCC--CceEEEeccccccCChh------------------------------------HHHHHHHHHH
Q 017835 244 NLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE------------------------------------ECVKILKNCK 284 (365)
Q Consensus 244 ~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~------------------------------------~~~~~L~~i~ 284 (365)
-+.-+++.|.. .+| ++|+|+++.+||-+++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12346677766 455 49999999999966521 3345799999
Q ss_pred HhcccCCCCcEEEEEeeecCCCccCcc------c-h-hhhhhhhhhhhhc--------cC--ccccCHHHHHHHHH-hcC
Q 017835 285 KAIAINGKAGKVIIIDIKMESEKADYK------T-T-ETQLFMDMLMMVL--------VK--GEERNEKEWAKLFF-EAG 345 (365)
Q Consensus 285 ~~L~p~~~gG~lli~e~~~~~~~~~~~------~-~-~~~~~~d~~~~~~--------~~--~~~~t~~e~~~ll~-~aG 345 (365)
+.|+| ||++++.-...++...... + . ....+.++..... ++ --.++.+|++++++ +.|
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGS 289 (374)
T ss_dssp HHEEE---EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCS
T ss_pred HHhCC---CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCC
Confidence 99999 8888887665544211100 0 0 0001111111100 11 11259999999998 589
Q ss_pred CccceEEEc
Q 017835 346 FSDYKITDV 354 (365)
Q Consensus 346 f~~~~~~~~ 354 (365)
|++.++...
T Consensus 290 F~I~~le~~ 298 (374)
T 3b5i_A 290 FAIDKLVVY 298 (374)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 998776544
No 250
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.48 E-value=1.1e-06 Score=83.94 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=66.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC-----C--CceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI-----P--PADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~-----~--~~D~i~ 263 (365)
..+..+|||+|||+|.++..|++. ..+++++|. +.+++.|++ ..+++++.+|+.+.. + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456789999999999999999987 679999999 888888874 348999999998732 1 499999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+.--- ..+.++++.+.+ ++| ++.+++
T Consensus 362 ~dPPr-----~g~~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 362 LDPAR-----AGAAGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp ECCCT-----TCCHHHHHHHHH-HCC---SEEEEE
T ss_pred ECCCC-----ccHHHHHHHHHh-cCC---CeEEEE
Confidence 84222 112345555544 677 555544
No 251
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.48 E-value=5.2e-07 Score=84.72 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=72.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC---CC-CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA---IP-PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~~-~~D~i~~~~vl 268 (365)
+++.+|||+|||+|.++..++.. +.+++++|+ +.+++.+++ .-...+..+|+++. .+ .||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 45789999999999999999987 455999999 888888775 12235678898772 22 49999986433
Q ss_pred ccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 269 HNWND-------EECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 269 h~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
...+. ..-.++++.+.+.|+| ||.|++....
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 21111 1235788999999999 8888876653
No 252
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.48 E-value=5.9e-07 Score=84.41 Aligned_cols=111 Identities=11% Similarity=0.053 Sum_probs=80.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH--------------------------------------IECTV 229 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 229 (365)
..++.... +.+...|||.+||+|.++++++....+ .++++
T Consensus 191 a~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 191 AALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 33444445 467789999999999999998876443 56999
Q ss_pred eec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecccccc-CC-hhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 230 FDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN-WN-DEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 230 ~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~-~~-~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+|. +.+++.++. .++++++.+|+.+ +.+ .||+|++.--.+. +. .++...+.+.+.+.|++ -+|++++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEE
Confidence 999 889988875 3579999999988 333 5999999744322 12 24556677777777765 3378888
Q ss_pred EEee
Q 017835 298 IIDI 301 (365)
Q Consensus 298 i~e~ 301 (365)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8764
No 253
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.45 E-value=6.1e-07 Score=79.85 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=68.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC---Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP---PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~---~~ 259 (365)
..+++.+. ..++ +|||||||+|.++..|++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 44555555 5667 99999999999999999984 68999999 888888775 4689999999988 554 46
Q ss_pred eEEEeccccccCChhHHHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKN 282 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~ 282 (365)
|.|+ .+.-++++.+-..++|..
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhcC
Confidence 6654 455666777766666655
No 254
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.45 E-value=2.8e-07 Score=88.33 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=77.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHHhccc------CC--CeEEEeCCCCCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-------------PHIECTVFDQ-PHVVADLKS------NG--NLKYVGGNMFEA 255 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~--~i~~~~~d~~~~ 255 (365)
..++.+|+|.|||+|.++..+.+.. +..+++|+|+ +.++..++. .. ++.+.++|.+..
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 3556799999999999999988763 4568999999 888877763 12 788999999883
Q ss_pred -CC-CceEEEeccccccCChh---------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 256 -IP-PADAVLIKCVLHNWNDE---------------ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 256 -~~-~~D~i~~~~vlh~~~~~---------------~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.. .||+|++.-.++..... .-..+++++.+.|+| ||++.++-+
T Consensus 249 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 249 EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 33 69999998666543211 124789999999999 899988764
No 255
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.43 E-value=1.8e-06 Score=80.84 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=82.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH--------------------------------------IECTV 229 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 229 (365)
..++.... +.+...|+|.+||+|.++++.+....+ .++++
T Consensus 184 aall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 184 AAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 33444444 567789999999999999998876443 56999
Q ss_pred eec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecccccc-C-ChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 230 FDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN-W-NDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 230 ~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~-~-~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+|. +.+++.++. .++++++.+|+.+ +.+ .||+|++.--.+. + ..++...+.+.+.+.|++ -+|++++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 340 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQF 340 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEE
Confidence 999 888888875 4579999999988 333 5999999744432 2 235667788888888875 3488888
Q ss_pred EEee
Q 017835 298 IIDI 301 (365)
Q Consensus 298 i~e~ 301 (365)
|+..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
No 256
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.41 E-value=5.8e-07 Score=79.15 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=66.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CCCC-c-eE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AIPP-A-DA 261 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~~~-~-D~ 261 (365)
..+++.++ ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 44555555 567789999999999999999987 4579999999 888888775 3579999999988 5543 1 45
Q ss_pred EEeccccccCChhHHHHHH
Q 017835 262 VLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L 280 (365)
+++.+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666666555433333
No 257
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.40 E-value=1.1e-06 Score=82.51 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=81.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH--------------------------------------IECTV 229 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 229 (365)
..++.... ..+..+|||.+||+|.+++.++....+ .++++
T Consensus 185 a~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 185 AGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 33444444 467789999999999999998876322 57999
Q ss_pred eec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecccccc-CC-hhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 230 FDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN-WN-DEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 230 ~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~-~~-~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+|+ +.+++.++. .++|++..+|+.+ +.+ .||+|++.--... +. .++..++.+++.+.|++ -+|+.++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEE
Confidence 999 889998875 3479999999988 334 5999999655432 22 34556777888777775 2378888
Q ss_pred EEee
Q 017835 298 IIDI 301 (365)
Q Consensus 298 i~e~ 301 (365)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
No 258
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.38 E-value=7.8e-07 Score=81.69 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=70.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--C------------CCeEEEeCCCCC--C-----C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--N------------GNLKYVGGNMFE--A-----I 256 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~------------~~i~~~~~d~~~--~-----~ 256 (365)
.++.+||+||||+|..+..+++..+ .+++.+|+ +.+++.+++ . +|++++.+|..+ . .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3578999999999999999998765 78999999 888888875 1 279999999987 2 1
Q ss_pred CCceEEEeccccccCC-hh---HHHHHHHHH----HHhcccCCCCcEEEEE
Q 017835 257 PPADAVLIKCVLHNWN-DE---ECVKILKNC----KKAIAINGKAGKVIII 299 (365)
Q Consensus 257 ~~~D~i~~~~vlh~~~-~~---~~~~~L~~i----~~~L~p~~~gG~lli~ 299 (365)
..||+|++-..-..+. .+ ...++++.+ +++|+| ||.+++.
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~p---gGilv~q 313 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 313 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCC---CcEEEEE
Confidence 3599999864320110 01 124555665 899999 6766654
No 259
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.37 E-value=6.3e-07 Score=81.00 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=62.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-C--C--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-A--I-- 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~-- 256 (365)
..+++.+. ..++.+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+ + .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 44555555 56778999999999999999999998889999999 889988875 2689999999876 2 1
Q ss_pred ---CCceEEEecc
Q 017835 257 ---PPADAVLIKC 266 (365)
Q Consensus 257 ---~~~D~i~~~~ 266 (365)
..||.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 3599998743
No 260
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.36 E-value=8.4e-06 Score=74.71 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=106.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------------------------CCCeEEEeCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------------------------NGNLKYVGGN 251 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~i~~~~~d 251 (365)
.+...||.+|||.......|...+++++++-+|.|.+++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4678999999999999999999888999999999988776442 2689999999
Q ss_pred CCC-CC----------C-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhh
Q 017835 252 MFE-AI----------P-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFM 319 (365)
Q Consensus 252 ~~~-~~----------~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~ 319 (365)
+.+ +. + ...++++-.+|++++.+++.++|+.+.+.+ | +|.++++|.+.+..... ++... ...
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~-~fg~~-m~~ 249 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPND-RFGAI-MQS 249 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTC-CHHHH-HHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcc-hHHHH-HHH
Confidence 987 21 1 268889999999999999999999999988 5 68888999988733221 12110 001
Q ss_pred hhhh-hhc---cCccccCHHHHHHHHHhcCCc
Q 017835 320 DMLM-MVL---VKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 320 d~~~-~~~---~~~~~~t~~e~~~ll~~aGf~ 347 (365)
.+.. ... ......+.++..+.|.++||+
T Consensus 250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1111 101 112335889999999999997
No 261
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.33 E-value=2.9e-07 Score=82.32 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=62.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CCCC-c-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH--IECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AIPP-A- 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~~~-~- 259 (365)
..+++.+. ..++.+|||||||+|.++..|++..+. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. +
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 34555555 567889999999999999999998653 45999999 888888875 3689999999988 5443 2
Q ss_pred -----eEEEeccccccCChh
Q 017835 260 -----DAVLIKCVLHNWNDE 274 (365)
Q Consensus 260 -----D~i~~~~vlh~~~~~ 274 (365)
.+.++.+.-++.+.+
T Consensus 110 ~~~~~~~~vv~NlPY~iss~ 129 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPYNISSP 129 (279)
T ss_dssp SSSSCCEEEEEECCHHHHHH
T ss_pred cccCCceEEEEccCccccHH
Confidence 244555555544444
No 262
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.33 E-value=1.1e-06 Score=88.60 Aligned_cols=98 Identities=9% Similarity=0.123 Sum_probs=74.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------C-CCeEEEeCCCCCC---C-CCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------N-GNLKYVGGNMFEA---I-PPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~-~~~D~i~~~ 265 (365)
.++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++ . ++++++.+|+++. . ..||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 356899999999999999988753 346999999 888888875 2 4899999999872 2 359999985
Q ss_pred cccc--------cCC-hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 266 CVLH--------NWN-DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 266 ~vlh--------~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
-... .+. .....++++++.+.|+| ||.|++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 3221 111 13447889999999999 78877544
No 263
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.33 E-value=7.5e-07 Score=78.62 Aligned_cols=87 Identities=15% Similarity=0.262 Sum_probs=63.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC----
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP---- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~---- 257 (365)
..+++.+. ..++.+|||||||+|.++..|++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 44555555 5678899999999999999999874 68999999 888888875 3789999999998 443
Q ss_pred --CceEEEeccccccCChhHHHHHH
Q 017835 258 --PADAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 258 --~~D~i~~~~vlh~~~~~~~~~~L 280 (365)
.+| ++.+.-++++.+-..++|
T Consensus 95 ~~~~~--vv~NlPY~is~~il~~ll 117 (255)
T 3tqs_A 95 DKPLR--VVGNLPYNISTPLLFHLF 117 (255)
T ss_dssp SSCEE--EEEECCHHHHHHHHHHHH
T ss_pred CCCeE--EEecCCcccCHHHHHHHH
Confidence 255 444544444444333333
No 264
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.31 E-value=2.6e-06 Score=84.03 Aligned_cols=128 Identities=14% Similarity=0.182 Sum_probs=84.6
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcccc--ccCCCeEEEecCCccHHHHHHHH---H-CCCCeEEEeech
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDV--FEGLNTLVDVGGGTGTLASAIAK---K-FPHIECTVFDQP 233 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~iLDiG~G~G~~~~~l~~---~-~p~~~~~~~D~~ 233 (365)
..|+.+.+++-.-..|.+++... +.+..... ......|||||||+|-+....++ + .-.+++.+++..
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 46888888887777777765432 22222110 22346899999999988444333 3 223478899985
Q ss_pred HHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 234 HVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 234 ~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
++...+.+ .++|+++.+|+.+ ..| .+|+|++-..=+..-.+-..++|....+.||| ||.++
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGimi 464 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEEc
Confidence 56555553 6899999999998 677 49999885433333333334677777889999 77654
No 265
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.31 E-value=7e-06 Score=76.28 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCeEEEecCCccHHHHHHHHH-----------------CCCCeEEEeech-----------HH-HHhccc----CCCeEE
Q 017835 201 LNTLVDVGGGTGTLASAIAKK-----------------FPHIECTVFDQP-----------HV-VADLKS----NGNLKY 247 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-~~~a~~----~~~i~~ 247 (365)
..+|+|+||++|..+..+... .|.++++.-|+| +. .+.+++ ..+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 579999999999999887766 477888888986 11 111111 112233
Q ss_pred ---EeCCCCC-CCC--CceEEEeccccccCChhH-------------------------HH------------HHHHHHH
Q 017835 248 ---VGGNMFE-AIP--PADAVLIKCVLHNWNDEE-------------------------CV------------KILKNCK 284 (365)
Q Consensus 248 ---~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~-------------------------~~------------~~L~~i~ 284 (365)
+++.|.. -+| ++|+|+++.+||-+++.. +. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665 355 499999999998544321 21 2377889
Q ss_pred HhcccCCCCcEEEEEeeecCCC--ccCccchhhhhhhhhhhhhc--------cC--ccccCHHHHHHHHHhcC-CccceE
Q 017835 285 KAIAINGKAGKVIIIDIKMESE--KADYKTTETQLFMDMLMMVL--------VK--GEERNEKEWAKLFFEAG-FSDYKI 351 (365)
Q Consensus 285 ~~L~p~~~gG~lli~e~~~~~~--~~~~~~~~~~~~~d~~~~~~--------~~--~~~~t~~e~~~ll~~aG-f~~~~~ 351 (365)
+.|+| ||++++.-...++. .....-.....+.++..... ++ --.++.+|++++++++| |++.++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 88888776655443 11100001112222211111 11 12359999999999985 777765
Q ss_pred EE
Q 017835 352 TD 353 (365)
Q Consensus 352 ~~ 353 (365)
..
T Consensus 290 e~ 291 (384)
T 2efj_A 290 ET 291 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 266
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.29 E-value=2.7e-06 Score=76.05 Aligned_cols=98 Identities=14% Similarity=0.249 Sum_probs=75.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCC----CCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAI----PPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~----~~~D~i 262 (365)
.+.++||=||+|.|..+.++++..+..+++.+|+ +.+++.+++ .+|++++.+|..+-. ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999999877789999999 888887764 579999999998832 259999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++-..=- .... -..++++.++++|+| ||.++...
T Consensus 162 i~D~~dp-~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDP-IGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EESCCCC-CCTTCCSSCCHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEeCCCc-CCCchhhcCHHHHHHHHHHhCC---CCEEEEec
Confidence 8743211 1110 125789999999999 77777643
No 267
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.27 E-value=5.6e-06 Score=78.54 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=67.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh 269 (365)
..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .. ++++.+|+.+..+ .||+|++.-.-.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 356789999999999999999986 468999999 888888875 23 9999999988544 699999854321
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
... ..+++.+. .|+| +|.+++.
T Consensus 365 g~~----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 365 GLH----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp CSC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred chH----HHHHHHHH-hcCC---CcEEEEE
Confidence 111 23455554 4898 7777664
No 268
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.27 E-value=7.5e-07 Score=78.50 Aligned_cols=89 Identities=11% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC---
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP--- 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~--- 258 (365)
..+++.+. ..++.+|||||||+|.++. +. ..+..+++++|+ +.+++.+++ ..+++++.+|+.+ +++.
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 44555555 5677899999999999999 64 444444999999 889988875 2489999999987 4432
Q ss_pred ---ceEEEeccccccCChhHHHHHH
Q 017835 259 ---ADAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 259 ---~D~i~~~~vlh~~~~~~~~~~L 280 (365)
.+.+++++.-++.+.+...+++
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2355666666666655444444
No 269
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.26 E-value=2.5e-06 Score=67.25 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=61.7
Q ss_pred ccCCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC----CceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGTG-TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP----PADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~----~~D~i~~~~vlh~~ 271 (365)
..+..+|||||||+| ..+..|++. .++.++++|+ |..++ ++..|++++.. +||+|+..+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir----- 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR----- 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence 345679999999999 688888874 3788999997 55444 88999999754 699998866
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
++++...-+.++++.. |.-++|.-.
T Consensus 98 PP~El~~~i~~lA~~v-----~adliI~pL 122 (153)
T 2k4m_A 98 PPAEIHSSLMRVADAV-----GARLIIKPL 122 (153)
T ss_dssp CCTTTHHHHHHHHHHH-----TCEEEEECB
T ss_pred CCHHHHHHHHHHHHHc-----CCCEEEEcC
Confidence 4555566666777666 456666543
No 270
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.17 E-value=3.8e-06 Score=73.64 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=66.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHHhccc----CCCeEEEeCCCCC-CCC--Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQP-HVVADLKS----NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D 260 (365)
++.+... +++..+|||+|||+|.++..++...+-.+++++|+. ........ ..++.....++.. .++ .+|
T Consensus 65 ei~ek~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 65 WFHERGY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHTTS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHhCC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 3444433 677889999999999999988877555566667662 22111111 1134444554422 333 599
Q ss_pred EEEeccccc---cCChh-HHHHHHHHHHHhcccCCCC-cEEEE
Q 017835 261 AVLIKCVLH---NWNDE-ECVKILKNCKKAIAINGKA-GKVII 298 (365)
Q Consensus 261 ~i~~~~vlh---~~~~~-~~~~~L~~i~~~L~p~~~g-G~lli 298 (365)
+|++....+ ++-|. ....+|+.+.++|+| | |.+++
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~ 182 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV 182 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE
Confidence 999976554 22232 334578999999999 8 87777
No 271
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.11 E-value=3.2e-06 Score=74.58 Aligned_cols=128 Identities=17% Similarity=0.158 Sum_probs=80.8
Q ss_pred CCCeEEEecCCccHHHHHHHHH-------CCC-----CeEEEeec-h---HHHHh-----------ccc-----------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK-------FPH-----IECTVFDQ-P---HVVAD-----------LKS----------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~-----------a~~----------- 241 (365)
+..+|||||+|+|..+..+++. .|+ ++++++|. | +.+.. ++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999998887664 674 58899986 4 22221 111
Q ss_pred ---------CCCeEEEeCCCCC--C-CC-----CceEEEecc-ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 242 ---------NGNLKYVGGNMFE--A-IP-----PADAVLIKC-VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 242 ---------~~~i~~~~~d~~~--~-~~-----~~D~i~~~~-vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
..+++++.+|+.+ + .+ .||+|++-. .-...++--..++|+.+++.|+| ||+|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tysa-- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFTS-- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESCC--
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEeC--
Confidence 1357788999866 2 22 599998842 11111111125789999999999 787764210
Q ss_pred CCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEE
Q 017835 304 ESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIE 362 (365)
Q Consensus 304 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~ 362 (365)
...+++.|.++||++.++...+.-.-++.
T Consensus 215 ------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~ 243 (257)
T 2qy6_A 215 ------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLC 243 (257)
T ss_dssp ------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEE
T ss_pred ------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEE
Confidence 01356778889999765544333333433
No 272
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.11 E-value=4.4e-06 Score=82.43 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=83.1
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHH----C---------CCCe
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK----F---------PHIE 226 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~----~---------p~~~ 226 (365)
..|+.+.+++-+-..|.+++.... ...+.. ..+...|||||||+|-++...+++ . ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al-------~d~~~~-~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGAL-------KDLGAD-GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH-------HHHHTT-CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHHH-------HHhhcc-cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 457888888877777777665421 111110 123568999999999996433222 1 2358
Q ss_pred EEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC------C-CceEEEeccccccCChhHHHHHHHHHHHhcccCC
Q 017835 227 CTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI------P-PADAVLIKCVLHNWNDEECVKILKNCKKAIAING 291 (365)
Q Consensus 227 ~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~------~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~ 291 (365)
++++|. +..+...+. .++|+++.+|+.+ .. + .+|+|++-..=+....+...+.|..+.+.|+|
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp-- 526 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP-- 526 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT--
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC--
Confidence 999998 433332221 6789999999988 44 4 59999987654333444445678888899999
Q ss_pred CCcEEE
Q 017835 292 KAGKVI 297 (365)
Q Consensus 292 ~gG~ll 297 (365)
||.++
T Consensus 527 -~Gi~i 531 (745)
T 3ua3_A 527 -TTISI 531 (745)
T ss_dssp -TCEEE
T ss_pred -CcEEE
Confidence 77654
No 273
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.10 E-value=6.1e-06 Score=72.95 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=55.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-h-------HHHHhccc-------CCCeEEEeCCCCC--C-C---
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-P-------HVVADLKS-------NGNLKYVGGNMFE--A-I--- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~~i~~~~~d~~~--~-~--- 256 (365)
..++.+|||+|||+|..+..++.. +.+++++|+ + .+++.+++ .++++++.+|+.+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445679999999999999999986 579999999 7 67776653 3579999999876 2 3
Q ss_pred -CCceEEEecccccc
Q 017835 257 -PPADAVLIKCVLHN 270 (365)
Q Consensus 257 -~~~D~i~~~~vlh~ 270 (365)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 35999999765544
No 274
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.10 E-value=1.9e-05 Score=72.76 Aligned_cols=151 Identities=14% Similarity=0.120 Sum_probs=91.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----------------CCCCeEEEeechH-HHHhc-cc-C-----CC---eEEEeCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK----------------FPHIECTVFDQPH-VVADL-KS-N-----GN---LKYVGGN 251 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~~~a-~~-~-----~~---i~~~~~d 251 (365)
....+|+|+||++|..+..+... .|..+++.-|+|. ....+ +. . .+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999877654433 4677888889843 22221 11 1 12 2335677
Q ss_pred CCC-CCC--CceEEEeccccccCChh-------------------------------HHHHHHHHHHHhcccCCCCcEEE
Q 017835 252 MFE-AIP--PADAVLIKCVLHNWNDE-------------------------------ECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 252 ~~~-~~~--~~D~i~~~~vlh~~~~~-------------------------------~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
|.. -+| ++|+++++.+||-+++. +...+|+..++.|+| ||+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 776 456 59999999999854431 223569999999999 99998
Q ss_pred EEeeecCCCccCc-----cch-hhhhhhhhhhhhc--------cCc--cccCHHHHHHHHHhcCC-ccceEE
Q 017835 298 IIDIKMESEKADY-----KTT-ETQLFMDMLMMVL--------VKG--EERNEKEWAKLFFEAGF-SDYKIT 352 (365)
Q Consensus 298 i~e~~~~~~~~~~-----~~~-~~~~~~d~~~~~~--------~~~--~~~t~~e~~~ll~~aGf-~~~~~~ 352 (365)
+.-...++..... .+. ....+.++..... ++- -.++.+|++.+++++|+ ++.+..
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 8766654432100 010 1112222211111 111 23488999999999965 665543
No 275
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.03 E-value=3.3e-06 Score=78.75 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C--------------
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I-------------- 256 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~-------------- 256 (365)
+.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..+++++.+|+.+- .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 478999999999999998875 358999999 888888774 35899999998761 1
Q ss_pred --CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 --PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 --~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..||+|++.--- ..+.+++.+.|+| +|+++.+..
T Consensus 292 ~~~~fD~Vv~dPPr--------~g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDPPR--------SGLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECCCT--------TCCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECcCc--------cccHHHHHHHHhC---CCEEEEEEC
Confidence 158999873211 1233455666677 788887764
No 276
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.00 E-value=3.6e-05 Score=69.79 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=55.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C---CCceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I---PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~---~~~D~i~ 263 (365)
..++.+|||+|||+|..+..++... +..+++++|+ +..++.+++ ..+++++.+|+.+. . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5678899999999999999999874 5679999999 777777664 35899999998762 1 2589999
Q ss_pred e
Q 017835 264 I 264 (365)
Q Consensus 264 ~ 264 (365)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
No 277
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.00 E-value=1.3e-05 Score=74.89 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=71.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----C-----------------CCeEEEeCCCCCC--
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----N-----------------GNLKYVGGNMFEA-- 255 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----------------~~i~~~~~d~~~~-- 255 (365)
++.+|||+|||+|..++.++.+.+..+++++|+ +..++.+++ . .+++++.+|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 467999999999999999999988889999999 877777663 2 2388999998762
Q ss_pred -CC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 256 -IP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 256 -~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.+ .||+|++.- . .. ...++..+.+.|+| ||.|++..
T Consensus 127 ~~~~~fD~I~lDP-~---~~--~~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GS--PMEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CC--HHHHHHHHHHhcCC---CCEEEEEe
Confidence 23 599999632 1 11 15788999999999 78666654
No 278
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.99 E-value=1.6e-05 Score=77.82 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=74.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHHhccc------CCC-----eEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP------------------HIECTVFDQ-PHVVADLKS------NGN-----LKY 247 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~~-----i~~ 247 (365)
..++.+|+|.+||+|.++..+.+... ..+++|+|+ +.++..++. ... +.+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 34567999999999999988876531 247999999 888777763 222 788
Q ss_pred EeCCCCC-C---CCCceEEEeccccccCCh------------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 248 VGGNMFE-A---IPPADAVLIKCVLHNWND------------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 248 ~~~d~~~-~---~~~~D~i~~~~vlh~~~~------------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..+|.+. + ...||+|+++-.+..... ..-..++.++.+.|+| ||++.++-+
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p 313 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 313 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence 9999987 2 236999999755433211 1124789999999999 899888754
No 279
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.98 E-value=2.7e-05 Score=78.51 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC------------------------------------------CCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF------------------------------------------PHI 225 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~------------------------------------------p~~ 225 (365)
..++.... ..+...|||.+||+|.++++.+... +..
T Consensus 180 a~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 180 AAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 33444444 4677899999999999999887642 336
Q ss_pred eEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC----CceEEEecccccc-C-ChhHHHHHHHHHHHhcc--
Q 017835 226 ECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP----PADAVLIKCVLHN-W-NDEECVKILKNCKKAIA-- 288 (365)
Q Consensus 226 ~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~----~~D~i~~~~vlh~-~-~~~~~~~~L~~i~~~L~-- 288 (365)
+++++|+ +.+++.|+. .++|++..+|+.+ ..| .+|+|+++--... + ..+....+.+.+.+.|+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 889988875 3469999999987 222 5999999744321 2 23344556665555544
Q ss_pred -cCCCCcEEEEEee
Q 017835 289 -INGKAGKVIIIDI 301 (365)
Q Consensus 289 -p~~~gG~lli~e~ 301 (365)
| ||+++|+..
T Consensus 338 ~~---g~~~~ilt~ 348 (703)
T 3v97_A 338 FG---GWNLSLFSA 348 (703)
T ss_dssp CT---TCEEEEEES
T ss_pred CC---CCeEEEEeC
Confidence 6 899998854
No 280
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.97 E-value=6.3e-06 Score=72.37 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=67.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCC-eEEEeC-CCCC-CCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGN-LKYVGG-NMFE-AIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-i~~~~~-d~~~-~~~~~ 259 (365)
.++.+++. +.+..+|||+|||+|.++..++...+-..++++|+ ......+.. ..+ +.+... |+.. +...+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 44556664 77888999999999999999887766667888887 222222111 112 223322 4332 22359
Q ss_pred eEEEeccccc----cCChhHHHHHHHHHHHhcccCCCC--cEEEE
Q 017835 260 DAVLIKCVLH----NWNDEECVKILKNCKKAIAINGKA--GKVII 298 (365)
Q Consensus 260 D~i~~~~vlh----~~~~~~~~~~L~~i~~~L~p~~~g--G~lli 298 (365)
|+|++--..+ ..+......+|+-+.++|+| | |.+++
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI 199 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence 9999976554 11222334578888899999 6 76665
No 281
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.94 E-value=0.00036 Score=63.71 Aligned_cols=146 Identities=12% Similarity=0.179 Sum_probs=105.0
Q ss_pred CCCeEEEecCCccHHHHHHHHH-CCCCeEEEeechHHHHhcc-----------------------------cCCCeEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQPHVVADLK-----------------------------SNGNLKYVG 249 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~i~~~~ 249 (365)
+...||-+|||.=.....|... .+++++.-+|.|++++.-+ ...+.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5689999999999999888875 3678999999998877422 146889999
Q ss_pred CCCCCC-----------CC-C-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhh
Q 017835 250 GNMFEA-----------IP-P-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQ 316 (365)
Q Consensus 250 ~d~~~~-----------~~-~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~ 316 (365)
.|+.+. +. + .-++++-.+|.+++.+++.++|+.+.+...+ |.+++.|.+.++.. +...
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~----fg~~- 240 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDR----FGQI- 240 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSH----HHHH-
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCH----HHHH-
Confidence 999871 12 2 5678888999999999999999999998865 88888999865432 1100
Q ss_pred hhhhhhhhhc-cC--ccccCHHHHHHHHHhcCCccceEEEc
Q 017835 317 LFMDMLMMVL-VK--GEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 317 ~~~d~~~~~~-~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..-.+..... .. ....+.++..+.|.++||+.+++..+
T Consensus 241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 0001111111 01 12347889999999999998776655
No 282
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.92 E-value=7e-05 Score=68.75 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=57.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCCC---CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIP---PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~---~~D~i~~~~vl 268 (365)
++++.++||+||++|+++..++++ +.+++++|..++-.......+|+++.+|.+...+ ++|+|++-.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 578999999999999999999987 6799999985555555557899999999998322 59999986655
No 283
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.92 E-value=1e-05 Score=75.70 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=71.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-------CCC-eEEEeCCCCC--C--CC-CceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-------NGN-LKYVGGNMFE--A--IP-PADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~~-i~~~~~d~~~--~--~~-~~D~i~ 263 (365)
.++.+|||++||+|.+++.++.+.++ .+++++|. +..++.+++ .++ ++++.+|.++ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 45689999999999999999998665 57999999 888887774 234 9999999865 2 23 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+.- . ... ..++..+.+.|+| ||.|++..
T Consensus 131 lDP--~--g~~--~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 131 LDP--F--GTP--VPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp ECC--S--SCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECC--C--cCH--HHHHHHHHHHhCC---CCEEEEEe
Confidence 854 1 111 3588899999999 77666554
No 284
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.77 E-value=2.7e-05 Score=68.56 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=53.8
Q ss_pred ccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH-------HHhccc--------CCCeEEEeCCCCC---CC
Q 017835 198 FEGL--NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHV-------VADLKS--------NGNLKYVGGNMFE---AI 256 (365)
Q Consensus 198 ~~~~--~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~--------~~~i~~~~~d~~~---~~ 256 (365)
.+++ .+|||+|||+|..+..++.. +.+++++|. +.+ ++.++. ..+++++.+|..+ ..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4555 89999999999999999998 568999999 644 333321 1579999999876 23
Q ss_pred C-CceEEEecccccc
Q 017835 257 P-PADAVLIKCVLHN 270 (365)
Q Consensus 257 ~-~~D~i~~~~vlh~ 270 (365)
+ .||+|++.-..++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 5999999766654
No 285
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.63 E-value=0.00014 Score=66.99 Aligned_cols=97 Identities=18% Similarity=0.089 Sum_probs=71.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------------CCCeEEEeCCCCCC-------C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------------NGNLKYVGGNMFEA-------I 256 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~~-------~ 256 (365)
.++++||=||+|.|..+.++++. |..+++.+|+ +.+++.+++ .+|++++.+|...- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 45689999999999999999985 4578999999 888888764 25689999998751 1
Q ss_pred CCceEEEeccccccC-------C-hhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 257 PPADAVLIKCVLHNW-------N-DEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 257 ~~~D~i~~~~vlh~~-------~-~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
..||+|++-..-... . ..-..++++.++++|+| ||.++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 259999875321110 1 11235788999999999 7766553
No 286
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.61 E-value=0.0004 Score=62.82 Aligned_cols=144 Identities=15% Similarity=0.079 Sum_probs=96.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCCC----------C-C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEAI----------P-P 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~-~ 258 (365)
.+...||++|||-=.....+.. .++++++-+|.|.+++..++ ..+..++..|+.+.+ + .
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 3456899999998888666652 12589999999988886542 567889999998621 1 2
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhh-h-hhhhh-----c-cCcc
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFM-D-MLMMV-----L-VKGE 330 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-d-~~~~~-----~-~~~~ 330 (365)
.-++++-.++|++++++...+|+.+.+.+.| |..+++|...++.... ........ . +.... . ....
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~ 253 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELI 253 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHH--HHHHHHHHHHHHC-----------CCT
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccc
Confidence 5577888999999999999999999999888 5566777765543110 00000001 1 10010 0 1111
Q ss_pred cc-C-HHHHHHHHHhcCCccc
Q 017835 331 ER-N-EKEWAKLFFEAGFSDY 349 (365)
Q Consensus 331 ~~-t-~~e~~~ll~~aGf~~~ 349 (365)
.+ + .++..++|.+.||+.+
T Consensus 254 ~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 254 YHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCTTCCCHHHHHTTTTEEEE
T ss_pred cCCCChHHHHHHHHHCcCccc
Confidence 22 5 7889999999999877
No 287
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.59 E-value=0.00028 Score=70.86 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=69.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC---CCeEEEeec-hHHHHhc--cc----------CCCeEEEeCCCCCC----CCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFP---HIECTVFDQ-PHVVADL--KS----------NGNLKYVGGNMFEA----IPP 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~----------~~~i~~~~~d~~~~----~~~ 258 (365)
.++.+|+|.|||+|.++..+++..+ ..+++|+|+ +.+++.+ +. .....+...|+..+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3578999999999999999998875 357999999 7777766 21 12235666777662 235
Q ss_pred ceEEEecccccc-CCh-hH-------------------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 ADAVLIKCVLHN-WND-EE-------------------------CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 ~D~i~~~~vlh~-~~~-~~-------------------------~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
||+|+++--... +.. .. ...++.++.+.|+| ||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 999999644311 111 11 23467888999999 899888654
No 288
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.58 E-value=0.00015 Score=64.06 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=65.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHHhcc---c-C-CCeEEEeC-CCCC-CCCCce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQP-HVVADLK---S-N-GNLKYVGG-NMFE-AIPPAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~---~-~-~~i~~~~~-d~~~-~~~~~D 260 (365)
++.+. . .+.++.+|||+||++|.++..+++..+-..++++|+. ....... . . +-+.+..+ |+.. +...+|
T Consensus 72 ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D 149 (300)
T 3eld_A 72 WLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD 149 (300)
T ss_dssp HHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence 34444 2 3678899999999999999999987655577888872 2111111 0 1 22333333 4443 223599
Q ss_pred EEEeccccc----cCChhHHHHHHHHHHHhcccCCCC-cEEEEE
Q 017835 261 AVLIKCVLH----NWNDEECVKILKNCKKAIAINGKA-GKVIII 299 (365)
Q Consensus 261 ~i~~~~vlh----~~~~~~~~~~L~~i~~~L~p~~~g-G~lli~ 299 (365)
+|++.-..+ ..+......+|.-+.++|+| | |.+++=
T Consensus 150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K 190 (300)
T 3eld_A 150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHV---NTENFCVK 190 (300)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence 999965544 11112235668888899999 8 877663
No 289
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.56 E-value=0.00022 Score=62.85 Aligned_cols=75 Identities=23% Similarity=0.207 Sum_probs=59.9
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-C-------
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-A------- 255 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~------- 255 (365)
.+++++.+. .+++..+||.+||.|..+..|+++ +.+++++|. |.+++.+++ .+|++++.+|+.+ +
T Consensus 11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence 456666666 677889999999999999999998 779999999 888877654 2589999999876 1
Q ss_pred CCCceEEEec
Q 017835 256 IPPADAVLIK 265 (365)
Q Consensus 256 ~~~~D~i~~~ 265 (365)
...+|.|++.
T Consensus 87 ~~~vDgIL~D 96 (285)
T 1wg8_A 87 VERVDGILAD 96 (285)
T ss_dssp CSCEEEEEEE
T ss_pred CCCcCEEEeC
Confidence 1347888763
No 290
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.55 E-value=6e-05 Score=70.67 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=53.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----C----CCeEEEeCCCCCC--C---CCceEEEe
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----N----GNLKYVGGNMFEA--I---PPADAVLI 264 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~i~~~~~d~~~~--~---~~~D~i~~ 264 (365)
.++.+|||+|||+|..+..+++. ..+++++|. +.+++.++. . .+++++.+|+.+. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34789999999999999998887 569999999 888888764 2 4799999999873 2 26999998
Q ss_pred c
Q 017835 265 K 265 (365)
Q Consensus 265 ~ 265 (365)
.
T Consensus 170 D 170 (410)
T 3ll7_A 170 D 170 (410)
T ss_dssp C
T ss_pred C
Confidence 4
No 291
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.55 E-value=0.00045 Score=58.20 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=62.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCCC------------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFEA------------ 255 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~------------ 255 (365)
+.+.++||||||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 4567899999985 45555565 45789999998 776666653 34799999995431
Q ss_pred ------------C---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 256 ------------I---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 256 ------------~---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
. ..||+|++-.- .....+..+.+.|+| ||.| ++|.+.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~---GG~I-v~DNv~ 156 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITR---PVTL-LFDDYS 156 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSS---CEEE-EETTGG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCC---CeEE-EEeCCc
Confidence 1 34999998542 113455667788999 6655 666543
No 292
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.51 E-value=0.00012 Score=71.62 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=69.0
Q ss_pred CeEEEecCCccHHHHHHHHHCC---------------CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C-C
Q 017835 202 NTLVDVGGGTGTLASAIAKKFP---------------HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A-I 256 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~ 256 (365)
.+|+|.+||+|.++..+.+..+ ..++.|+|+ +.++..++. ..++.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999988765432 468999999 777777763 2345558889876 3 2
Q ss_pred C--CceEEEeccccc--cCChh-------------------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 P--PADAVLIKCVLH--NWNDE-------------------------ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 ~--~~D~i~~~~vlh--~~~~~-------------------------~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+ .||+|+++--.. .|..+ .-..++.++.+.|+| ||++.++-+
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP 396 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA 396 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence 2 599999964332 22211 113588999999999 899887753
No 293
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.37 E-value=0.00033 Score=59.64 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=69.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc--c---CCCeEEEeC-CCCC-CCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK--S---NGNLKYVGG-NMFE-AIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~---~~~i~~~~~-d~~~-~~~~~ 259 (365)
.++.+.+. +++..+|||+||++|.++...+....-.++.++|+ +.-.+.-. + -+.|+|..+ |++. +...+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45566664 77888999999999999998888765558999998 32222111 1 478999999 9765 33459
Q ss_pred eEEEeccccccCC---hh-HHHHHHHHHHHhcccCCCCcEEEE
Q 017835 260 DAVLIKCVLHNWN---DE-ECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 260 D~i~~~~vlh~~~---~~-~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
|+++|--.=..=+ +. ...++|.-+.+.|++ |.+.|
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~----~~fc~ 184 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN----NQFCI 184 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc----CCEEE
Confidence 9999853221111 11 223466666788887 45554
No 294
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.34 E-value=0.00064 Score=66.30 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=72.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhccc------C--CCeEEEeCCCCCC-CC-----CceE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKF---PHIECTVFDQ-PHVVADLKS------N--GNLKYVGGNMFEA-IP-----PADA 261 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~------~--~~i~~~~~d~~~~-~~-----~~D~ 261 (365)
++.+|+|.+||+|.++..+.+.. +..++.|+|+ +.+...++. . .++.+..+|.+.. +| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998875 3578999999 777777763 1 4678999999873 22 4999
Q ss_pred EEecccc-ccCChh--------------------HHHHHHHHHHHhcc-cCCCCcEEEEEee
Q 017835 262 VLIKCVL-HNWNDE--------------------ECVKILKNCKKAIA-INGKAGKVIIIDI 301 (365)
Q Consensus 262 i~~~~vl-h~~~~~--------------------~~~~~L~~i~~~L~-p~~~gG~lli~e~ 301 (365)
|+++--. ..|... .-..++.++.+.|+ | ||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence 9986222 112100 01347999999999 8 899887654
No 295
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.29 E-value=0.00034 Score=60.45 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=62.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeechHH--HHhcc-cCCCe---EEEeC-CCCCCCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQPHV--VADLK-SNGNL---KYVGG-NMFEAIP-P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~~~~--~~~a~-~~~~i---~~~~~-d~~~~~~-~ 258 (365)
.++.+++ .++++.+|||+||+.|.++...++.- ++ .+.+.++..- +.... ....+ .+..+ |+++..+ .
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 4555664 48899999999999999999888752 22 2233333111 11111 01344 55557 9987444 6
Q ss_pred ceEEEeccccc--cCC-hh-HHHHHHHHHHHhcccCCCCc-EEEE
Q 017835 259 ADAVLIKCVLH--NWN-DE-ECVKILKNCKKAIAINGKAG-KVII 298 (365)
Q Consensus 259 ~D~i~~~~vlh--~~~-~~-~~~~~L~~i~~~L~p~~~gG-~lli 298 (365)
+|+|++--.-. +.. |. .....|.-+.+.|+| || .+++
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 99999853321 111 21 122356667789999 77 5555
No 296
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.21 E-value=6.9e-05 Score=85.34 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=65.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHHhcccC---CCeEEEeCCCCCC---CC-CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-----IECTVFDQ-PHVVADLKSN---GNLKYVGGNMFEA---IP-PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~~---~~-~~D~i~~~ 265 (365)
.+..+||+||.|+|..+..+++.... .+++..|. +...+.+++. -.++....|..++ .+ .||+|+++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 34679999999999887777666432 35777777 4455555431 1233222233332 22 49999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
++||--++. .+.|+++++.|+| ||++++.+......-.. ...++.-. ....+...+.++|.++|.++|
T Consensus 1319 ~vl~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~~g~-----~~~~~~~~--~r~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1319 CALATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHPLGE-----MVGFLTSP--EQGGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp CC-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTT
T ss_pred ccccccccH--HHHHHHHHHhcCC---CcEEEEEeccccccccc-----cccccccc--cccCCcccCHHHHHHHHHhCC
Confidence 999854443 6789999999999 99999987543110000 00000000 001123347789999999999
Q ss_pred CccceEEE
Q 017835 346 FSDYKITD 353 (365)
Q Consensus 346 f~~~~~~~ 353 (365)
|+.+....
T Consensus 1387 f~~~~~~~ 1394 (2512)
T 2vz8_A 1387 LHLVALKR 1394 (2512)
T ss_dssp EEEEEEEE
T ss_pred Cceeeecc
Confidence 98776543
No 297
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.10 E-value=0.0015 Score=57.58 Aligned_cols=105 Identities=14% Similarity=0.199 Sum_probs=67.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh---ccc--CCCeEEEeC-CCCC-CCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVAD---LKS--NGNLKYVGG-NMFE-AIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~--~~~i~~~~~-d~~~-~~~~~ 259 (365)
.++.+.+. +.+..+|||+||++|.++...+....-.++.++|+ ..-.+. .++ -.-|.++.+ |+.. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 44555544 67788999999999999997777765557999998 221111 111 234888888 8766 33459
Q ss_pred eEEEeccccccCCh----h-HHHHHHHHHHHhcccCCCC-cEEEE
Q 017835 260 DAVLIKCVLHNWND----E-ECVKILKNCKKAIAINGKA-GKVII 298 (365)
Q Consensus 260 D~i~~~~vlh~~~~----~-~~~~~L~~i~~~L~p~~~g-G~lli 298 (365)
|+|+|--. .--+. . ...++|.-+.+.|++ + |.+.|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence 99988533 11121 1 223466777889988 5 55555
No 298
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.01 E-value=0.00021 Score=48.90 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=44.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
+..|++.|...+.++|..+||+.+|+ +...+.+.|..|...|++.... .++|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC------CceEeeC
Confidence 44566777643368999999999999 5789999999999999987754 5788865
No 299
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.76 E-value=0.0056 Score=54.35 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=66.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hH--------------------------HHHhccc-----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF-----PHIECTVFDQ-PH--------------------------VVADLKS----- 241 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~----- 241 (365)
.....|||+|+..|..++.++... ++.+++++|. .. ..+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 446799999999999998887654 4778999884 10 1222222
Q ss_pred ---CCCeEEEeCCCCCC---CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 242 ---NGNLKYVGGNMFEA---IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 242 ---~~~i~~~~~d~~~~---~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.++|+++.||+.+. .+ .+|+|++-.-.+ +.....|..+...|+| |.++|+|.
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p----GGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV----GGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE----EEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC----CEEEEEcC
Confidence 37999999999773 32 489988854221 2346789999999999 55666554
No 300
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.73 E-value=0.00053 Score=51.85 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=51.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHc--CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTL--QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
+..|++.|... +++|+.+||+.+ ++ ....+++.|+.|...|+++..+ .+.|++|+.+..+..
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~------rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA------NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS------TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC------CceEEECchHHHHHH
Confidence 44567777643 799999999999 88 5789999999999999999875 569999999974443
No 301
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.59 E-value=0.0048 Score=55.73 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=55.7
Q ss_pred chHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC
Q 017835 186 TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE 254 (365)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~ 254 (365)
+..++++.+. .+++..+||..||.|..+..+++.. |+.+++++|. +.+++.++. ..|++++.+++.+
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3466777776 6788999999999999999999984 7889999999 888887753 5788888888765
No 302
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.56 E-value=0.0012 Score=48.49 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=50.9
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+|..-.++.|++.| . ++.|+.+||+.+++ +...+.+.|+.|...|++.... +.|++++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-------CEEEECCCch
Confidence 344444566788888 5 78999999999999 5788999999999999999873 5899988664
No 303
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.51 E-value=0.028 Score=56.59 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=103.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC--------CCeEEEeechHHHHhccc------------------------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFP--------HIECTVFDQPHVVADLKS------------------------------ 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 241 (365)
+...||-+|||-=....+|...+| ++++.-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 468999999999999999988755 778899999888765321
Q ss_pred CCCeEEEeCCCCCC-------------CCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 242 NGNLKYVGGNMFEA-------------IPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 242 ~~~i~~~~~d~~~~-------------~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
+++..++..|+.+. .++ .-++++-.+|.+++.+++.++|+.+.+ + | ++.++++|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 14889999999872 122 456777899999999999999999985 4 5 588999998876543
Q ss_pred cCccchhhhhhhhhhhhhc---cCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 308 ADYKTTETQLFMDMLMMVL---VKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 308 ~~~~~~~~~~~~d~~~~~~---~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.+. +.... ...+..... .-....+.++..+.|.+.||+.+....+
T Consensus 262 ~d~-f~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 321 21110 111111100 0112347899999999999987665543
No 304
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.44 E-value=0.0013 Score=46.28 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=47.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcc-hHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ-CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+-.|++.|... +|.|+.+||+.+|+ ... .+++.|..|...|++...+.+ ...|++|+.+.
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~g----RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGTT----PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECSS----SCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCCC----CCCeEeCHhHH
Confidence 44455666654 79999999999999 466 899999999999999976531 34799998775
No 305
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.20 E-value=0.0017 Score=57.70 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=46.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...+.++|+.|||+++|+ +..-+.|+|+.|+..||+.++. ++.|++++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~------~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA------DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT------TSEEEECTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCcEEehHHH
Confidence 4567777754468999999999999 4688999999999999999985 5789999754
No 306
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.19 E-value=0.0023 Score=47.13 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.+|.--.++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~~ 83 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE---AQTVYYTLKSEE 83 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC---TTCCEEEECCHH
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECHHH
Confidence 34444456677778875 79999999999999 57899999999999999998752 113458877643
No 307
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.18 E-value=0.0031 Score=46.74 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=44.9
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |....|++++.
T Consensus 24 ~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~ 82 (102)
T 3pqk_A 24 VRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN---IKQIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS---SSCCEEEECSS
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECcH
Confidence 34445555544 68999999999999 56889999999999999988652 11345887764
No 308
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.17 E-value=0.015 Score=52.01 Aligned_cols=130 Identities=18% Similarity=0.136 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCccHHHHHH----HHHCCCCe--EEEeec-h--------H----HHHhcc------cCCCe--EEEeCC
Q 017835 199 EGLNTLVDVGGGTGTLASAI----AKKFPHIE--CTVFDQ-P--------H----VVADLK------SNGNL--KYVGGN 251 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l----~~~~p~~~--~~~~D~-~--------~----~~~~a~------~~~~i--~~~~~d 251 (365)
.+.-+|+|+|=|+|...... .+..|..+ ++.++. + . ..+... ...++ ++.-||
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 34568999999999865433 23467654 455552 1 1 011000 03444 456788
Q ss_pred CCC---CCC--CceEEEecccc-ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 252 MFE---AIP--PADAVLIKCVL-HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 252 ~~~---~~~--~~D~i~~~~vl-h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
+.+ .++ .+|++++-..- ..-|+--..++|+++++.++| ||++.-..
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC-------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe-------------------------
Confidence 876 233 48999884321 111222235799999999999 77664311
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEE
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEV 363 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 363 (365)
....+++.|+++||.+.++...++-.-++.+
T Consensus 227 -------aag~VRR~L~~aGF~V~k~~G~g~KReml~A 257 (308)
T 3vyw_A 227 -------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVA 257 (308)
T ss_dssp -------CCHHHHHHHHHTTCEEEEEECC---CEEEEE
T ss_pred -------CcHHHHHHHHHCCCEEEecCCCCCCCceeEE
Confidence 1235578899999998776555444444444
No 309
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.09 E-value=0.012 Score=51.68 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=61.0
Q ss_pred ccCCCeEEEecC------CccHHHHHHHHHCCC-CeEEEeechHHHHhcccCCCeEEEeCCCCC-C-CCCceEEEecc--
Q 017835 198 FEGLNTLVDVGG------GTGTLASAIAKKFPH-IECTVFDQPHVVADLKSNGNLKYVGGNMFE-A-IPPADAVLIKC-- 266 (365)
Q Consensus 198 ~~~~~~iLDiG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~-~~~~D~i~~~~-- 266 (365)
.+.+.+|||+|+ ..|.. .+.+..|. ..++.+|+.++...+ . .++.||+.+ . ...+|+|++-.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 467899999996 77774 44455776 699999984444321 2 458999866 2 24699998832
Q ss_pred -ccccC------ChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 267 -VLHNW------NDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 267 -vlh~~------~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.--+. ...-+..++.=+.+.|+| ||.+++=
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 11111 122466777778889999 7877763
No 310
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.08 E-value=0.019 Score=42.92 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCcc
Q 017835 20 QAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQE 98 (365)
Q Consensus 20 ~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 98 (365)
...+++++.+.|...+|... .. ++.++.||++.+ ++ ++..+.+.|+.|...|++++.....|+..
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L---------~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~~d~r~ 69 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHL---------TH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPK 69 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHH---------TT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred HHHHHHHHcCccHHHHHHHH---------Hh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 34555666666665555443 32 689999999999 99 67999999999999999998653222212
Q ss_pred ceEecCccchhhh
Q 017835 99 EGYILTSASKLLL 111 (365)
Q Consensus 99 ~~y~~t~~~~~l~ 111 (365)
-.|++|+.++.+.
T Consensus 70 ~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 70 VEYELSEYGRSLE 82 (107)
T ss_dssp EEEEECTTGGGGH
T ss_pred EEEEECccHHHHH
Confidence 3599999886443
No 311
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.07 E-value=0.0025 Score=56.06 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=48.6
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+.|++.|...++++|+.|||+++|+ +..-+.|+|+.|+..|++.++.. .+.|++++...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-----~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-----ARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-----SSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEcCHHHH
Confidence 3467777754478999999999999 57899999999999999998751 38899987543
No 312
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.03 E-value=0.012 Score=53.87 Aligned_cols=84 Identities=10% Similarity=0.136 Sum_probs=59.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-C-C----CC-----------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-A-I----PP----------- 258 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~-~----~~----------- 258 (365)
+...|||||.|.|.++..|++.....++++++. +..+...++ .++++++.+|+++ + + .+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~ 137 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSS 137 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhhHHHhhccccccccccccc
Confidence 358999999999999999998744457888887 555555543 5799999999976 2 1 11
Q ss_pred ----ceEEEeccccccCChhHHHHHHHHH
Q 017835 259 ----ADAVLIKCVLHNWNDEECVKILKNC 283 (365)
Q Consensus 259 ----~D~i~~~~vlh~~~~~~~~~~L~~i 283 (365)
-.+.++.+.-++.+.+-..++|..+
T Consensus 138 ~~~~~~~~vvaNLPYnIstpil~~ll~~~ 166 (353)
T 1i4w_A 138 DHINDKFLTVANVTGEGSEGLIMQWLSCI 166 (353)
T ss_dssp TSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred ccCCCceEEEEECCCchHHHHHHHHHHhc
Confidence 1245666766677666556666654
No 313
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.99 E-value=0.011 Score=46.48 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|...|++++....+|+..-.+.+|+.++.+.
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 3456677777764 69999999999999 578999999999999999986522221112378888877443
No 314
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.98 E-value=0.04 Score=50.64 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=73.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------CCCeEEEeCCCCC--C-CC-Cce
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------NGNLKYVGGNMFE--A-IP-PAD 260 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~--~-~~-~~D 260 (365)
..++.+|||+-+|.|.=+..|+...++..++..|. +.-+..+++ ..++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 57789999999999999999998877767899998 544443331 3578888888766 1 23 599
Q ss_pred EEEeccc--------c-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 261 AVLIKCV--------L-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 261 ~i~~~~v--------l-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.|++--- + ..+...+ -.++|+++.+.||| ||+|+-....+..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCch
Confidence 9987211 1 1122221 24789999999999 8877766555543
No 315
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.94 E-value=0.022 Score=44.29 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCC
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENE 96 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 96 (365)
-+...+++++.+-|...+|... .. ++.+..||++.+ ++ .+..+.+.|+.|...|++++....++.
T Consensus 14 Cpi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 14 SPVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp CHHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CcHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3567788888888888877654 22 799999999999 99 679999999999999999987532211
Q ss_pred ccceEecCccchhhh
Q 017835 97 QEEGYILTSASKLLL 111 (365)
Q Consensus 97 ~~~~y~~t~~~~~l~ 111 (365)
..-.|++|+.++.+.
T Consensus 80 r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 80 PKVEYSLTEFGRTLE 94 (131)
T ss_dssp CEEEEEECTTGGGGH
T ss_pred CeEEEEECHhHHHHH
Confidence 113599999998554
No 316
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.84 E-value=0.0028 Score=48.45 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=51.0
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
++|.--.++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |....|++++.+.
T Consensus 13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~---gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ---GRVRTCAIEKEPF 79 (118)
T ss_dssp HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec---CCEEEEEECHHHH
Confidence 44444556667777764 79999999999999 57899999999999999987652 1134588887553
No 317
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.82 E-value=0.0029 Score=47.83 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=46.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.++.|+..|.. ++.|+.+||+.+++ +...+.+.|+.|...|++..... +....|++|+.+.
T Consensus 22 ~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~---gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV---GREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec---CCEEEEEechHHH
Confidence 34556666643 78999999999999 57899999999999999997641 1123488887664
No 318
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=95.78 E-value=0.0048 Score=47.47 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+++|.--.++.|+..|... ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~---gr~~~y~l~~~~ 103 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE---GKLALYSLGDEH 103 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CCEEEESCHH
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE---CCEEEEEECHHH
Confidence 4444444567788888632 78999999999999 57999999999999999987651 112358887643
No 319
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.76 E-value=0.0042 Score=45.54 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=47.8
Q ss_pred HHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 38 CAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 38 ~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.-.++.|+..|.. +++.|..+||+.+|+ +...+.+.|+.|...|++..... +....|++++.+
T Consensus 23 ~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~---~r~~~y~l~~~~ 85 (99)
T 3cuo_A 23 HPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD---AQRILYSIKNEA 85 (99)
T ss_dssp SHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC---SSCEEEEECCHH
T ss_pred ChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec---CCEEEEEEChHH
Confidence 3345566666765 369999999999999 57899999999999999998751 112357877654
No 320
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.73 E-value=0.0064 Score=42.85 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=46.1
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
....|++.|.. .+.|+.|||+++|+ ....+++.|..|...|++...... +-.|+++...
T Consensus 18 ~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~~----PP~W~~~~~~ 76 (82)
T 1oyi_A 18 IVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDDI----PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSSS----SCEEESCC--
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCCC----CCcceeccCc
Confidence 34556677775 34999999999999 578999999999999999997632 5678877654
No 321
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.65 E-value=0.0069 Score=53.25 Aligned_cols=57 Identities=11% Similarity=0.248 Sum_probs=46.3
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|...|++..+. ++.|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~------~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA------DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCeEEecHHH
Confidence 3456666533368999999999999 5789999999999999999875 3489998754
No 322
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.65 E-value=0.0025 Score=47.91 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=51.6
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCC
Q 017835 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSE 94 (365)
Q Consensus 15 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 94 (365)
+..+....++..+....... |+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++.....
T Consensus 10 ~~~~~~~~~~~al~~~~r~~---------IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-- 73 (108)
T 2kko_A 10 ALLDQVARVGKALANGRRLQ---------ILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARRE-- 73 (108)
T ss_dssp HHHHHHHHHHHHHTTSTTHH---------HHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEE--
T ss_pred hhHHHHHHHHHHhCCHHHHH---------HHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe--
Confidence 34444444554444444444 4444553 68999999999999 57999999999999999987651
Q ss_pred CCccceEecCccc
Q 017835 95 NEQEEGYILTSAS 107 (365)
Q Consensus 95 ~~~~~~y~~t~~~ 107 (365)
|....|++++..
T Consensus 74 -gr~~~y~l~~~~ 85 (108)
T 2kko_A 74 -GTRQYYRIAGED 85 (108)
T ss_dssp -TTEEEEEESCHH
T ss_pred -CCEEEEEEChHH
Confidence 112357777543
No 323
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.60 E-value=0.0043 Score=49.71 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+++|.--.++.|+..|.. ++.|+.+||+.+|+ ....+.+.|+.|...|++..... |....|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~---Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD---GRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec---CCEEEEEEChHHH
Confidence 4566666678888888874 79999999999999 57899999999999999998651 1123588887554
No 324
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.59 E-value=0.0055 Score=42.94 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=44.2
Q ss_pred HcCcccccccC--CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 41 QLGIPDIIHNH--AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 41 ~lglf~~L~~~--~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
+..|++.|... +.++|+.|||+++|+ +...+.+.|.-|...|++...+. .++.|..++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~----~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS----SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC----CCCceEecC
Confidence 34455556542 138999999999999 57889999999999999998752 146777664
No 325
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.57 E-value=0.0052 Score=53.36 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=47.2
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
.|++.|...++++|+.|||+++|+ +...+.|+|+.|...|++.++.. +++|++++....
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-----~~~Y~lg~~~~~ 68 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-----AGGFRLGPALGQ 68 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-----GCEEEECSHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----CCeEEECHHHHH
Confidence 355566543358999999999999 57899999999999999998751 478999975543
No 326
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.56 E-value=0.0046 Score=46.25 Aligned_cols=76 Identities=12% Similarity=0.237 Sum_probs=51.0
Q ss_pred hHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccC
Q 017835 14 DELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTS 93 (365)
Q Consensus 14 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~ 93 (365)
.+.......++..+...... .|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++.....
T Consensus 10 ~~~~~~~~~~~~~l~~~~r~---------~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~~- 74 (106)
T 1r1u_A 10 TDTLERVTEIFKALGDYNRI---------RIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKRQ- 74 (106)
T ss_dssp HHHHHHHHHHHHHTCSHHHH---------HHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-
T ss_pred HHHHHHHHHHHHHhCCHHHH---------HHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-
Confidence 33444444444444444444 44444553 68999999999999 57899999999999999998651
Q ss_pred CCCccceEecCcc
Q 017835 94 ENEQEEGYILTSA 106 (365)
Q Consensus 94 ~~~~~~~y~~t~~ 106 (365)
|....|++++.
T Consensus 75 --gr~~~y~l~~~ 85 (106)
T 1r1u_A 75 --GQSMIYSLDDI 85 (106)
T ss_dssp --TTEEEEEESSH
T ss_pred --CCEEEEEEChH
Confidence 11224776653
No 327
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.56 E-value=0.019 Score=44.79 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=51.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+....|.+|+.+..+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 44466666643 68999999999999 679999999999999999987532222223589999888655
No 328
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.54 E-value=0.014 Score=52.24 Aligned_cols=41 Identities=22% Similarity=0.071 Sum_probs=35.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS 241 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 241 (365)
.++..|||++||+|.++.++++. +.+++++|+ +.+++.+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 56789999999999999998876 569999999 888887764
No 329
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.53 E-value=0.027 Score=45.63 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=50.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 45566677653 68999999999999 678999999999999999986422222123488998887444
No 330
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.51 E-value=0.0065 Score=53.01 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=45.9
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.|++.|...++++|+.|||+++|+ +...+.|+|+.|...|++.+.. ++.|++++..
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~------~~~Y~lg~~~ 67 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECTHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC------CCcEEECHHH
Confidence 455566543358999999999999 5789999999999999999873 5889998754
No 331
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.51 E-value=0.0094 Score=52.26 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=48.8
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.|++.|...+++.|+.|||+++|+ +...+.|+|+.|...|++.++ ++.|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~-------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS-------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-------CCEEEEcHHHHHHH
Confidence 3456666643468999999999999 578999999999999999986 48999998665444
No 332
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.49 E-value=0.0075 Score=42.64 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=43.8
Q ss_pred HcCcccccccC--CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 41 QLGIPDIIHNH--AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 41 ~lglf~~L~~~--~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+..|++.|... |.++|+.+||+++|+ +...+++.|..|...|++...+. ..+.|...+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~----~~~~W~i~~~~~ 74 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS----SSCEEEEC----
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC----CCCeeEEeCcHH
Confidence 34455555542 137999999999999 56889999999999999998652 157788776554
No 333
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.49 E-value=0.082 Score=51.33 Aligned_cols=101 Identities=10% Similarity=0.034 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-------------PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~ 256 (365)
...+.+|+|-.||+|.++....+.. ....+.|+|+ +.+...++. .....+..+|.+. +.
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~ 294 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPL 294 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCG
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCch
Confidence 4566799999999999988776532 1346899998 766666652 3344567888775 21
Q ss_pred ------CCceEEEecccccc-CC-------------hhHHHHHHHHHHHhcc-------cCCCCcEEEEEee
Q 017835 257 ------PPADAVLIKCVLHN-WN-------------DEECVKILKNCKKAIA-------INGKAGKVIIIDI 301 (365)
Q Consensus 257 ------~~~D~i~~~~vlh~-~~-------------~~~~~~~L~~i~~~L~-------p~~~gG~lli~e~ 301 (365)
..||+|+++--+.. +. .+.....+..+.+.|+ | ||++.++-+
T Consensus 295 ~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVlP 363 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVVP 363 (530)
T ss_dssp GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEEE
T ss_pred hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEec
Confidence 14999999754421 11 1112346777777776 5 898888754
No 334
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.44 E-value=0.0047 Score=47.20 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=44.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.++.|+..|.. ++.++.+||+.+|+ +...+.+.|+.|...|++..... |....|++++.
T Consensus 22 ~r~~IL~~L~~--~~~~~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~---gr~~~y~l~~~ 80 (118)
T 2jsc_A 22 TRCRILVALLD--GVCYPGQLAAHLGL---TRSNVSNHLSCLRGCGLVVATYE---GRQVRYALADS 80 (118)
T ss_dssp HHHHHHHHHHT--TCCSTTTHHHHHSS---CHHHHHHHHHHHTTTTSEEEEEC---SSSEEEEESSH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEEChH
Confidence 34555555553 68999999999999 57999999999999999997641 11235777753
No 335
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.29 E-value=0.0082 Score=42.54 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=40.2
Q ss_pred HcCcccccccCC-CCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHA-KPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~-~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..|++.|...+ ++.|++||++.+ ++ +..-++|.|+.|+..|++.+..
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 445777776543 689999999999 88 5789999999999999999864
No 336
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.25 E-value=0.0054 Score=45.00 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=50.8
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.++..-.++.|+..|... ++.|..+||+.+++ +...+.+.|+.|...|++.......++....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 344444556666666432 68999999999999 578999999999999999964311111124588888775
No 337
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.24 E-value=0.0098 Score=52.39 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=46.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|....+++|+.|||+++|+ +...+.|+|+.|...|++.++ ++.|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~-------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD-------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES-------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec-------CCEEEEcHHH
Confidence 3456666643468999999999999 578999999999999999986 4889998754
No 338
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.07 E-value=0.013 Score=45.04 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=44.7
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.++.|+..|.. ++.++.+||+.+|+ ....+.+.|+.|...|++..... |....|++++.
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~~---gr~~~y~l~~~ 105 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRKQ---GRHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESSH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEEChH
Confidence 34556666654 68999999999999 57999999999999999997651 11234777754
No 339
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.04 E-value=0.0096 Score=44.97 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 19 SQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 19 ~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
+...+++++.+.|...+|.. |.. ++.+..+||+.+ ++ +...+.+.|+.|...|++++.....|..
T Consensus 11 ~~~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp HHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CHHHHHHHHcCccHHHHHHH---------HHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 34455565556666555543 332 589999999999 99 6799999999999999999865322221
Q ss_pred cceEecCccchhhh
Q 017835 98 EEGYILTSASKLLL 111 (365)
Q Consensus 98 ~~~y~~t~~~~~l~ 111 (365)
.-.|++|+.++.+.
T Consensus 77 ~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 77 RVEYTLTPEGYALY 90 (112)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECHhHHHHH
Confidence 23599999887443
No 340
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.04 E-value=0.033 Score=41.54 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCceeccccCCCC
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFFALQKTSENE 96 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 96 (365)
.+...+++++.+.|...+|... .. ++.++.||++.++ + ++..+.+.|+.|...|++++.....|.
T Consensus 13 c~~~~~l~~l~~~~~~~IL~~L---------~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIFQI---------NR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHHHH---------TT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CCHHHHHHHHcCccHHHHHHHH---------Hh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 3456667777777776666533 22 6899999999994 9 679999999999999999986532221
Q ss_pred ccceEecCccchhhh
Q 017835 97 QEEGYILTSASKLLL 111 (365)
Q Consensus 97 ~~~~y~~t~~~~~l~ 111 (365)
..-.|.+|+.++.+.
T Consensus 79 r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 79 PRVEYSLTPLGEKVL 93 (107)
T ss_dssp CEEEEEECHHHHTTH
T ss_pred CeeEEEECccHHHHH
Confidence 113599999886433
No 341
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.02 E-value=0.026 Score=43.70 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
++.|.++||+.+++ ++..++++|+.|...|+++.... ..+.|.++...
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g----~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG----AYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCG
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC----CCCceEeCCCH
Confidence 68999999999999 57999999999999999987641 13678887643
No 342
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.01 E-value=0.025 Score=45.10 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
...+|++.+.+... . +++.|+++||+.+++ ++..++++|..|...|+++... | .|.|.+++...
T Consensus 13 ~~yAl~~L~~La~~---~--~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r----G-~GGy~L~~~p~ 76 (149)
T 1ylf_A 13 FSIAVHILSILKNN---P--SSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR----G-PGGAGLLKDLH 76 (149)
T ss_dssp HHHHHHHHHHHHHS---C--GGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCGG
T ss_pred HHHHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc----C-CCceEeCCChh
Confidence 34567777666542 2 268999999999999 5799999999999999998765 2 57888876543
No 343
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=94.99 E-value=0.019 Score=42.00 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=42.7
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.+..+||..+|+ +++.++..++.|...|+++.. .+.|.+|+.|..+.
T Consensus 21 ~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~-------~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQE-------GKQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEE-------CCeeEEChhHHHHH
Confidence 899999999999 689999999999999999998 46799999998544
No 344
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=94.95 E-value=0.013 Score=44.20 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=55.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCC--HHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMT--LNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t--~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
..+++.+.+.|...+|... .. ++.+ +.||++.+ |+ .+..+.+.|+.|...|++++... .
T Consensus 18 ~~~l~~l~~~wrl~IL~~L---------~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~----r 79 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVL---------GN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG----Q 79 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHH---------TS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES----S
T ss_pred HHHHHHHcCccHHHHHHHH---------hc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec----C
Confidence 4456666677776666543 32 6777 99999999 99 67999999999999999998741 1
Q ss_pred cceEecCccchhhh
Q 017835 98 EEGYILTSASKLLL 111 (365)
Q Consensus 98 ~~~y~~t~~~~~l~ 111 (365)
...|++|+.++.+.
T Consensus 80 ~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 80 ITTYALTEKGMNVR 93 (111)
T ss_dssp SEEEEECHHHHHHH
T ss_pred cEEEEECccHHHHH
Confidence 35699999887544
No 345
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.91 E-value=0.018 Score=40.54 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=36.0
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
|++.|... ++.|..|||+.+|+ +...+++.|+.|...|++...
T Consensus 5 Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 44555542 68999999999999 578899999999999999954
No 346
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.90 E-value=0.014 Score=40.96 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=37.7
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
|.+.|... +.+++.|||+.+++ .+..++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 44556653 79999999999999 679999999999999999998
No 347
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.89 E-value=0.032 Score=44.96 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.-.+|++.+.+... .. +++.|.++||+..++ ++..++++|..|...|++..... ..|.|.++...
T Consensus 26 ~~yAlr~L~~LA~~---~~-~~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p 90 (159)
T 3lwf_A 26 GRYGLTITLELAKR---IG-DGPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRG----AHGGYVLNGDP 90 (159)
T ss_dssp HHHHHHHHHHHHHT---TT-SCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECS----TTCEEEECSCT
T ss_pred HHHHHHHHHHHHhc---CC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecC----CCCceEecCCH
Confidence 34466666655432 22 268999999999999 57999999999999999998652 24789987543
No 348
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.84 E-value=0.016 Score=45.08 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCC
Q 017835 17 LQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSEN 95 (365)
Q Consensus 17 ~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~ 95 (365)
.-....+++++.+.|...+|... .. ++.+..+|++.+ |+ ++..+.+.|+.|...|++++....+|
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~~L---------~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~d 87 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILVAL---------RD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPVV 87 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHHHG---------GG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCCHHHHHHHHcCCcHHHHHHHH---------Hc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCCC
Confidence 34556677777777776665542 22 689999999999 79 67999999999999999998652222
Q ss_pred CccceEecCccchhhh
Q 017835 96 EQEEGYILTSASKLLL 111 (365)
Q Consensus 96 ~~~~~y~~t~~~~~l~ 111 (365)
...-.|++|+.++.+.
T Consensus 88 ~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 88 PPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECccHHHHH
Confidence 1123599999887544
No 349
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.84 E-value=0.054 Score=43.77 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
..++|++.+.+..- . +.+.|.++||+.+++ ++..++++|..|...|+++.... ..|.|++.....
T Consensus 11 ~~yAlr~l~~La~~---~--~~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p~ 75 (162)
T 3k69_A 11 FSVAVHSILYLDAH---R--DSKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTVG----KNGGYQLDLALA 75 (162)
T ss_dssp HHHHHHHHHHHHTT---T--TSCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEECS----TTCEEECCSCGG
T ss_pred HHHHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC----CCCCeEecCChh
Confidence 34566666665542 2 268999999999999 57999999999999999987652 246899886543
No 350
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.69 E-value=0.025 Score=44.35 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=49.7
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|. . ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+....+.+|+.+..+.
T Consensus 39 ~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 39 DFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 455566666 3 79999999999999 578999999999999999986422222123488888887544
No 351
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=94.59 E-value=0.014 Score=41.80 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=38.0
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|.+.|... +.+++.|||+.+++ .+..++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 44556553 79999999999999 5799999999999999999973
No 352
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.57 E-value=0.017 Score=46.42 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=50.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 34566666653 68999999999999 578999999999999999987532222123488998887544
No 353
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.56 E-value=0.026 Score=44.75 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccce
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG 100 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~ 100 (365)
...++++.+.|...+|... .. ++.+..||++.+++ +...+.+.|+.|...|++++....+|. .-.
T Consensus 15 ~~~l~~l~~~w~l~IL~~L---------~~--g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~ 79 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVRDA---------FE--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAESGS-HQE 79 (146)
T ss_dssp TTTHHHHCSSSHHHHHHHH---------HT--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECSSSS-CEE
T ss_pred HHHHHHhCCchHHHHHHHH---------Hh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecCCCC-eEE
Confidence 3456666667766666544 22 68999999999999 679999999999999999987532222 246
Q ss_pred EecCccchhhh
Q 017835 101 YILTSASKLLL 111 (365)
Q Consensus 101 y~~t~~~~~l~ 111 (365)
|++|+.++.+.
T Consensus 80 y~LT~~G~~l~ 90 (146)
T 2f2e_A 80 YRLTDKGRALF 90 (146)
T ss_dssp EEECHHHHTTH
T ss_pred EEECchHHHHH
Confidence 99999886443
No 354
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.48 E-value=0.056 Score=42.81 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=49.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec--cccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL--QKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~--~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++.+ .....|+..-.+.+|+.++.+.
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 45566666653 68999999999999 57899999999999999998 4321222123588998887443
No 355
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.45 E-value=0.039 Score=43.62 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
-.+|++.+.+... .. +++.|.++||+..++ ++..++++|..|...|++..... ..|.|.++....
T Consensus 11 ~yAl~~L~~La~~---~~-~~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p~ 75 (143)
T 3t8r_A 11 RYGLTLMISLAKK---EG-QGCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVRG----AKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHHHHHTT---TT-SCCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECSS----SSSEEEESSCGG
T ss_pred HHHHHHHHHHHhC---CC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecCC----CCCCeeecCCcc
Confidence 3456666555432 21 258999999999999 57999999999999999987642 147899876443
No 356
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.40 E-value=0.04 Score=43.19 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+.+||+.+++ +...+.+.|+.|...|++.+.. ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee------CceEEEchhHHHHH
Confidence 68999999999999 5789999999999999999875 57899999886443
No 357
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.33 E-value=0.029 Score=44.08 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=50.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 33 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 33 LFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 44556666543 68999999999999 678999999999999999986422222123589998887543
No 358
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.21 E-value=0.014 Score=47.43 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=48.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|...+++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 44455556542368999999999999 679999999999999999987522222123588999887544
No 359
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.17 E-value=0.02 Score=44.80 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=49.0
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ ++..+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 34556666643 79999999999999 679999999999999999987522222123588998887544
No 360
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.15 E-value=0.01 Score=46.61 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=49.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 39 QWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 34455566543 79999999999999 679999999999999999986422222123588998887544
No 361
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.13 E-value=0.024 Score=44.42 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=48.9
Q ss_pred cCccccc-ccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDII-HNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L-~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..| .. .++.|..+||+.+++ +...+.+.++.|...|++.+.....|+..-.+.+|+.+..+.
T Consensus 40 ~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 40 WLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 4455666 43 379999999999999 679999999999999999986422222123488888887544
No 362
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.11 E-value=0.018 Score=49.96 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=49.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|+.+||+.+++ +...+.|.|+.|...|++++.+. ...|++|+.+..+.
T Consensus 155 ~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-----~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 155 MKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-----DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----ccEEEECHHHHHHH
Confidence 3445555432 68999999999999 67899999999999999998742 57899999887554
No 363
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.09 E-value=0.032 Score=44.37 Aligned_cols=67 Identities=9% Similarity=0.160 Sum_probs=49.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++|+.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 45566677653 78999999999999 678999999999999999986421111123488888887544
No 364
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.07 E-value=0.022 Score=44.93 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=46.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++++.....|+....+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 42 EWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 44555666553 69999999999999 679999999999999999987422222123588888876443
No 365
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.04 E-value=0.094 Score=41.35 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=46.0
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc--cCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK--TSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~--~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..| . .++.|..+||+.+++ +...+.++++.|...|++.+.. ...|+..-.+.+|+.++.+.
T Consensus 41 ~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 41 SHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 3466677 4 379999999999999 5789999999999999999731 11121122478888887544
No 366
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.03 E-value=0.038 Score=38.54 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|+|.|+.|||+.+|+ .+..+++-|..|...|++.+..
T Consensus 22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 479999999999999 4678999999999999999874
No 367
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=94.03 E-value=0.025 Score=43.92 Aligned_cols=67 Identities=12% Similarity=0.283 Sum_probs=49.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 44455666543 68999999999999 568899999999999999986422222123488888887544
No 368
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=93.95 E-value=0.019 Score=44.65 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=48.7
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 37 ~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 37 FKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 3445555542 68999999999999 679999999999999999986422222122488998887544
No 369
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.93 E-value=0.022 Score=44.38 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=48.5
Q ss_pred cCcccccccCCC-CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAK-PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~-~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|...++ +.|..+||+.+++ +...+.+.++.|...|++.+.....|+....+.+|+.+..+.
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 344555554322 8999999999999 678999999999999999986522222122588888886444
No 370
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=93.88 E-value=0.011 Score=46.17 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=49.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+....+.+|+.+..+.
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 45566666543 68999999999999 679999999999999999986421111112488888887544
No 371
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.88 E-value=0.032 Score=44.10 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=46.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|...++++|..+||+.+++ +...+.++++.|...|++++.....|...-.+.+|+.++.+.
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 44555666533357899999999999 679999999999999999986521111112388888887544
No 372
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.86 E-value=0.027 Score=41.25 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=46.4
Q ss_pred cccccccCCCCCCHHHH----HHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQL----LTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~l----a~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|... ++.|..+| |+.+++ +...+.++|+.|...|++.+.... ....|.+|+.++.+.
T Consensus 13 iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 13 VLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred HHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHH
Confidence 44444432 68999999 999999 679999999999999999986410 134688998887544
No 373
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=93.84 E-value=0.11 Score=41.50 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=49.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 34466666643 68999999999999 678999999999999999987532222123588998887544
No 374
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=93.84 E-value=0.075 Score=41.91 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=47.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 43 q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 43 QYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 45556666543 79999999999999 679999999999999999987422222123588998887544
No 375
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.83 E-value=0.039 Score=43.31 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=48.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|....++.|..+||+.+++ +...+.+.++.|...|++++.....|+..-.+.+|+.+..+.
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 45566666541278999999999999 679999999999999999986421122123488888887544
No 376
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.77 E-value=0.019 Score=45.04 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=48.8
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|...-.+.+|+.+..+.
T Consensus 32 ~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 3345555543 68999999999999 679999999999999999986522222123488898887544
No 377
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.69 E-value=0.041 Score=43.12 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=45.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|... + .|..+||+.+++ +...+.+.|+.|...|++++.....|+..-.+.+|+.+..+.
T Consensus 40 ~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 40 QEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 44455666652 4 999999999999 679999999999999999986421122123588888886444
No 378
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=93.60 E-value=0.39 Score=43.73 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=75.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc-CCCeEEEeCCCCCC----CC--CceEEEeccccccCC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA----IP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~----~~--~~D~i~~~~vlh~~~ 272 (365)
.+++|+-||.|.+...+....-.. .+.++|. +..++..+. .....++.+|+.+- ++ .+|+++...-+..++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 589999999999999999884223 4677888 666666554 34556778888772 23 589999977665554
Q ss_pred hh--------HHHHHHHHHHHhcccCCCC--cEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 273 DE--------ECVKILKNCKKAIAINGKA--GKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 273 ~~--------~~~~~L~~i~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
.. ..-.++.++.++++.. . -+++++|.+..-.. + .+.+.+.+.|+
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l~~---------------------~--~~~~~i~~~l~ 137 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGFEV---------------------S--STRDLLIQTIE 137 (343)
T ss_dssp -------------CHHHHHHHHGGGC--SSCCSEEEEEEETTGGG---------------------S--HHHHHHHHHHH
T ss_pred hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCccccC---------------------H--HHHHHHHHHHH
Confidence 21 1123455444444321 1 25677776642110 0 14567888889
Q ss_pred hcCCccce
Q 017835 343 EAGFSDYK 350 (365)
Q Consensus 343 ~aGf~~~~ 350 (365)
+.||.+..
T Consensus 138 ~~GY~v~~ 145 (343)
T 1g55_A 138 NCGFQYQE 145 (343)
T ss_dssp HTTEEEEE
T ss_pred HCCCeeEE
Confidence 99987653
No 379
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.57 E-value=0.14 Score=40.40 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=48.9
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.+..+.
T Consensus 40 ~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 40 LFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 3456666542 68999999999999 679999999999999999986522222122488888876443
No 380
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.56 E-value=0.14 Score=40.21 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=49.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 34456666653 68999999999999 678999999999999999986422222123588888886443
No 381
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.48 E-value=0.017 Score=44.85 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=47.9
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++++.....|+..-.+.+|+.+..+.
T Consensus 32 ~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 32 VACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 3445555543 78999999999999 678999999999999999985421111112378888887544
No 382
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.42 E-value=0.065 Score=42.61 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=47.6
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|...+++.+..+||+.+++ +...+.++++.|...|++++.....|...-...+|+.|+.+.
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 34444433357888999999999 679999999999999999986532222123488899887544
No 383
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=93.35 E-value=0.046 Score=42.89 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=51.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhcC
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKD 113 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 113 (365)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....|+..-.+.+|+.+..+...
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 44455556543 68999999999999 67999999999999999998653222212348899988855543
No 384
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.30 E-value=0.051 Score=43.35 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=48.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|....++.|..+||+.+++ +...+.++++.|...|++.+.....|+..-.+.+|+.+..+.
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 45577777322378999999999999 568899999999999999986421121122488888887544
No 385
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.29 E-value=0.039 Score=43.82 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=61.6
Q ss_pred CCCchHhhhHHHHHHHHHHhHHHHHHHH---HHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc
Q 017835 10 DNISDELLQSQAHVWNNIFSFVNSMSLK---CAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF 86 (365)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~g~~~~~~L~---~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~ 86 (365)
++..........++...+.......+-. ...++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|+
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gl 87 (154)
T 2eth_A 12 HMDALEIFKTLFSLVMRFSSYLPSNEEISDMKTTELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGL 87 (154)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCCHHHHHSBHHHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCC
Confidence 3344444444455555444333221111 12345566666543 68999999999999 67899999999999999
Q ss_pred eeccccCCCCccceEecCccchhhh
Q 017835 87 FALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 87 l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++.....|+..-.+.+|+.++.+.
T Consensus 88 i~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 88 VVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp EEEEECTTTSSCEEEEECHHHHHHH
T ss_pred EEeeCCCCCcceeEEEECHHHHHHH
Confidence 9986422222123488888887544
No 386
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.27 E-value=0.023 Score=45.54 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=50.0
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|... ++.|..+||+.+++ +...+.++|+.|...|++++.....|+....+.+|+.++.+.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45566677653 78999999999999 678999999999999999986421122123488888887444
No 387
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.27 E-value=0.036 Score=44.40 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=47.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++++.....|+....|.+|+.++.+.
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 44566666653 79999999999999 678999999999999999986421121123478888876444
No 388
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=93.26 E-value=0.035 Score=43.79 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=48.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+....+.+|+.++.+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 34455666543 68999999999999 679999999999999999986422121123488888887544
No 389
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=93.23 E-value=0.032 Score=38.22 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=46.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
+-.|++.|.+++.|++..+||+.+|+ +..-+.+.|..|-..|.+.... .-+|.++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC------CceeeCC
Confidence 44566667766689999999999999 6788999999999999999876 5678776
No 390
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=93.16 E-value=0.046 Score=42.44 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=49.0
Q ss_pred HcCcccccccCC-CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHA-KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~-~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|...+ ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 344455555432 48999999999999 679999999999999999987522222123488898887544
No 391
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.15 E-value=0.032 Score=44.63 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=48.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 3345555543 78999999999999 679999999999999999987532222122488888887544
No 392
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.12 E-value=0.028 Score=43.14 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=38.7
Q ss_pred HcCcccccccCCCC-CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKP-MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~-~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..|+..|...++| +|+.+||+.+++ +...+.|.|+.|...|++.+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 34455555543356 999999999999 6799999999999999999863
No 393
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.11 E-value=0.092 Score=41.47 Aligned_cols=62 Identities=8% Similarity=0.167 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
...+|++.+.+..- . ++ |+++||+..++ ++..++++|..|...|++.... | .|.|+++.-..
T Consensus 8 ~~yAl~~L~~La~~----~--~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r----G-~GGy~Lar~p~ 69 (145)
T 1xd7_A 8 LAVAIHILSLISMD----E--KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA----G-VPGASLKKDPA 69 (145)
T ss_dssp HHHHHHHHHHHHTC----S--CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS----S-SSSCEESSCGG
T ss_pred HHHHHHHHHHHHhC----C--CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec----C-CCCceecCCHH
Confidence 44566666665432 1 34 99999999999 5799999999999999999875 3 57888886543
No 394
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.08 E-value=0.098 Score=40.70 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
++.|..+||+.+++ +...+.+.|+.|...|++.+. .+.|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~-------~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKK-------EDGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEec-------CCeEEEChhHHHH
Confidence 68999999999999 578999999999999999987 3679999887643
No 395
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.03 E-value=0.074 Score=40.84 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=48.1
Q ss_pred CcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 43 GIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.++..|... +++.|..+||+.+++ +...+.++|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 344444431 268999999999999 578999999999999999986432222223488998887544
No 396
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.01 E-value=0.043 Score=42.84 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=49.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 45556666643 68999999999999 568899999999999999986522222122578888887444
No 397
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=92.92 E-value=0.072 Score=38.61 Aligned_cols=52 Identities=6% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.|..+||+.+++ +...+.++|+.|...|++.... |+....|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~---d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECEL---EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCC---CCCeEEEEEChhHHHHH
Confidence 4999999999999 6799999999999999994332 11012489998887544
No 398
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.88 E-value=0.12 Score=43.87 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++.|..+||+.+++ ++..+.+.|+.|...|++++.. +..+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec------CCCeEECHHHHHHH
Confidence 379999999999999 6799999999999999999986 57899999987433
No 399
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.84 E-value=0.53 Score=35.37 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=47.4
Q ss_pred CCchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 11 NISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.-.+....-...++..+..... +.++..|.. ++.|+.+||+.+++ +...+.+.|+.|...|++...
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~---------~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 13 PLDSQAAAQVASTLQALATPSR---------LMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHH---------HHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEE
T ss_pred ccCHHHHHHHHHHHHHhCCHHH---------HHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3334444445555554444444 444445554 47999999999999 679999999999999999876
Q ss_pred c
Q 017835 91 K 91 (365)
Q Consensus 91 ~ 91 (365)
.
T Consensus 79 ~ 79 (119)
T 2lkp_A 79 R 79 (119)
T ss_dssp E
T ss_pred e
Confidence 4
No 400
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=92.76 E-value=0.045 Score=43.35 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=48.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++++.....|+..-.+.+|+.++.+..
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 34456666543 78999999999999 6799999999999999999864211111225888988875543
No 401
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.76 E-value=0.036 Score=40.92 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=37.8
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+.|+..|... ++.|+.+||+.+++ +...+.+.|+.|...|++....
T Consensus 23 ~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 23 VRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3344555432 68999999999999 6799999999999999999864
No 402
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.76 E-value=0.15 Score=39.79 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=49.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++ |..+||+.+++ +...+.+.++.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 39 DFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 45667777653 45 99999999999 679999999999999999987521111011489999887544
No 403
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=92.73 E-value=0.055 Score=43.12 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..+||+.+++ +...+.+.|+.|...|++.... +..+.+|+.+..+.
T Consensus 53 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 53 GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP------WRGVFLTAEGEKLA 102 (155)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec------CCceEEChhHHHHH
Confidence 67899999999999 6789999999999999999875 46788998886443
No 404
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=92.64 E-value=0.16 Score=36.93 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
++.+..+||+.+++ +...+.|.|..|...|+++.... +|+ -+...+|+.++.
T Consensus 35 ~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~-~D~-R~~v~LT~~G~~ 86 (96)
T 2obp_A 35 TPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE-ADG-RGHASLTQEGAA 86 (96)
T ss_dssp CCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-TTS-CEEEEECHHHHH
T ss_pred CCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC-CCC-ceeEEECHHHHH
Confidence 67899999999999 67999999999999999998543 333 345788887763
No 405
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.63 E-value=0.1 Score=42.06 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=58.1
Q ss_pred CchHhhhHHHHHHHHHHhHHHHHHHH---HHHHcCcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCce
Q 017835 12 ISDELLQSQAHVWNNIFSFVNSMSLK---CAIQLGIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFF 87 (365)
Q Consensus 12 ~~~~~~~~~~~l~~~~~g~~~~~~L~---~a~~lglf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l 87 (365)
..........++...+...+...+-. ...++.++..|... +++.|+.+||+.+++ +...+.++++.|...|++
T Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv 92 (168)
T 3u2r_A 16 LTQEAYLQLWRTYDRMKAIEEEIFSQFELSAQQYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLV 92 (168)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCE
Confidence 34445555555544444433322211 12344556666543 259999999999999 568999999999999999
Q ss_pred eccccCCCCccceEecCccchhhh
Q 017835 88 ALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 88 ~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.....|+..-.+.+|+.++.+.
T Consensus 93 ~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 93 LRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp EEEEETTEEEEEEEEECHHHHHHH
T ss_pred eecCCCCCCCeeEeEECHHHHHHH
Confidence 986521111112488888887544
No 406
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=92.58 E-value=0.032 Score=43.64 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=49.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++++.....|+....|.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 45556666542 68999999999999 578999999999999999986421111112478888887544
No 407
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=92.54 E-value=0.057 Score=42.49 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=41.3
Q ss_pred cCcccccccCC-CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHA-KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~-~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|...+ ++.|..+||+.+++ +...+.++++.|...|++++.....|...-.+.+|+.++.+.
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 34455555322 68999999999999 568899999999999999987522221122478888887544
No 408
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=92.49 E-value=0.036 Score=40.68 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
++.|+.+||+.+|+ ++..+.+.|+.|... ++..... |....|++++..
T Consensus 40 ~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~~---gr~~~y~l~~~~ 87 (99)
T 2zkz_A 40 KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNRQ---GLEIYYSINNPK 87 (99)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEEE---TTEEEEECCCHH
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheEe---CcEEEEEEChHH
Confidence 68999999999999 579999999999999 9986542 112358877643
No 409
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=92.36 E-value=0.035 Score=40.31 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHcCCCCCCcch-HHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQC-VYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.+.|..+||+.+++ +... +.++|+.|...|++..+. .|.....+.+|+.++.+.
T Consensus 29 ~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~--~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 29 YEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEET--LSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp CCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEE--EETTEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCC--CCCCeEEEEECHhHHHHH
Confidence 38999999999999 5788 999999999999999432 111123478888887444
No 410
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.11 E-value=0.031 Score=43.54 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=48.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 38 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 38 QWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 45556666543 68999999999999 678999999999999999986421111112378888877544
No 411
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=92.04 E-value=0.17 Score=32.26 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.++|+.|+|...++ +-...+.-|+.|.+.|-+.+. ..+|++.+-
T Consensus 17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKR-------sSRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKR-------SSRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------CCEEEECC-
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhh-------ccccccCcc
Confidence 79999999999999 578889999999999999998 488988764
No 412
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=91.91 E-value=1.4 Score=40.48 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=65.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhccc-CCCeEEEeCCCCCC----C-------CCceEEEeccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIE-CTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA----I-------PPADAVLIKCV 267 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~----~-------~~~D~i~~~~v 267 (365)
.+++|+=||.|.++..+.+. +.+ +.++|. +..++..+. .....++.+|+.+- + +.+|+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 58999999999999999988 455 457888 666665554 45677888888762 2 35999999777
Q ss_pred cccCC-------hhHHHHHHHHHHH---hcccCCCCcEEEEEeeecC
Q 017835 268 LHNWN-------DEECVKILKNCKK---AIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 268 lh~~~-------~~~~~~~L~~i~~---~L~p~~~gG~lli~e~~~~ 304 (365)
+..++ ++....++.+..+ .++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchH
Confidence 66664 1222344444444 4456 6788887653
No 413
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=91.60 E-value=0.091 Score=44.08 Aligned_cols=68 Identities=16% Similarity=0.297 Sum_probs=47.7
Q ss_pred HHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccC--CCCccceEecCccch
Q 017835 36 LKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTS--ENEQEEGYILTSASK 108 (365)
Q Consensus 36 L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~~~y~~t~~~~ 108 (365)
|..-.++.|+..|.. +|.|+.+||+.+++ +...+.+.|+.|...|++...... .++..-.|++++...
T Consensus 12 L~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 12 LGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred hCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 333344455555544 79999999999999 578999999999999999985421 011123588777553
No 414
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=91.53 E-value=0.24 Score=43.15 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=34.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK 240 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 240 (365)
.++..|||..||+|..+.+..+. +.+++++|+ +..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 56789999999999999988876 679999999 77777665
No 415
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=91.46 E-value=0.13 Score=42.49 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=50.6
Q ss_pred HcCcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... +++.|+.+||+.+++ +...+.++|+.|...|++++.....|...-.+.+|+.++.+.
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 45555666531 268999999999999 678999999999999999986532222123589999887544
No 416
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=91.42 E-value=0.39 Score=43.45 Aligned_cols=127 Identities=14% Similarity=0.075 Sum_probs=79.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeE--EEeec-hHHHHhccc--CCCeEEEeCCCCCC----CC--CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIEC--TVFDQ-PHVVADLKS--NGNLKYVGGNMFEA----IP--PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~--~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~----~~--~~D~i~~~~v 267 (365)
+...+++|+-||.|.+...+.+..-+.++ .++|. +..++..+. ... +..+|+.+- ++ .+|+++...-
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpP 85 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPP 85 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCC
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCC
Confidence 34569999999999999999887422344 58888 655555443 222 567888762 23 5899998776
Q ss_pred cccC-----------ChhHHHHHHHHHHH-hcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHH
Q 017835 268 LHNW-----------NDEECVKILKNCKK-AIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEK 335 (365)
Q Consensus 268 lh~~-----------~~~~~~~~L~~i~~-~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~ 335 (365)
+..+ .|+ .-.++.++.+ +++.....-+++++|.+..-.. + .+.+
T Consensus 86 CQ~fs~S~ag~~~~~~d~-r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~---------------------~--~~~~ 141 (327)
T 3qv2_A 86 CQPYNNSIMSKHKDINDP-RAKSVLHLYRDILPYLINKPKHIFIENVPLFKE---------------------S--LVFK 141 (327)
T ss_dssp CTTCSHHHHTTTCTTTCG-GGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG---------------------S--HHHH
T ss_pred ccCcccccCCCCCCCccc-cchhHHHHHHHHHHHhccCCCEEEEEchhhhcC---------------------h--HHHH
Confidence 6666 233 2356666666 5532000136788887642100 1 2457
Q ss_pred HHHHHHHhcCCccceE
Q 017835 336 EWAKLFFEAGFSDYKI 351 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~ 351 (365)
.+.+.|++.||.+...
T Consensus 142 ~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 142 EIYNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhCCCEEEEE
Confidence 7888899999986533
No 417
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=91.38 E-value=0.089 Score=38.11 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=45.4
Q ss_pred cccccccCCCCCCHHHHHH-HcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLT-TLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~-~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
|+-.|... ++.|+.+||+ .+++ +...+.|-++.|...|+++.++ ++ +.+|+.++.+.
T Consensus 21 iL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~------~D-l~LT~~G~~~l 78 (95)
T 1bja_A 21 ILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG------DG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET------TE-EEECHHHHHHH
T ss_pred HHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC------CC-eeeCHhHHHHH
Confidence 34445543 6899999999 9999 6789999999999999999333 34 99999887544
No 418
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=91.25 E-value=0.11 Score=41.00 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++|..+||+.+++ +...+.++++-|...|++++....+|+..-...+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 68999999999999 679999999999999999987532222112488888887544
No 419
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=91.08 E-value=0.041 Score=47.23 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec-cccCC-CCc-cceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL-QKTSE-NEQ-EEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~-~~~~~-~~~-~~~y~~t~~~~ 108 (365)
+++|.--.++.|+..|.. +|.|+.+||+.+|+ ....+.+.|+.|...|++.. ...+. .|. ...|++++.+.
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 344444456667777774 79999999999999 57899999999999999998 33100 000 12488887664
No 420
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=91.06 E-value=0.63 Score=40.41 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=64.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec----hHH------------------------HHhc----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK-------FPHIECTVFDQ----PHV------------------------VADL---- 239 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~~a---- 239 (365)
.-...|+|+|+-.|..+..++.. .++-++.++|. |+. +...
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 33579999999999988886652 46678999983 221 1100
Q ss_pred ---cc----CCCeEEEeCCCCCC-------CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 240 ---KS----NGNLKYVGGNMFEA-------IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 240 ---~~----~~~i~~~~~d~~~~-------~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+. .++|+++.|++.+. .| .+|++.+-.=. -+.....+..+...|+| |.++++|-
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~----GGvIv~DD 217 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTK----GSIVAFDE 217 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEE----EEEEEESS
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCC----CcEEEEcC
Confidence 01 37899999999872 23 38888875421 12346789999999999 55555554
No 421
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=91.01 E-value=0.032 Score=45.84 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=47.6
Q ss_pred HcCcccccccCCC--CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAK--PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~--~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|...++ +.|..+||+.+++ +...+.++|+.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4556666764323 3999999999999 568899999999999999986421111112488888887544
No 422
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=90.91 E-value=1.7 Score=39.11 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=74.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhccc-CCCeEEEeCCCCC----CCCCceEEEeccccccCCh
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIE-CTVFDQ-PHVVADLKS-NGNLKYVGGNMFE----AIPPADAVLIKCVLHNWND 273 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~~~~ 273 (365)
..+++|+-||.|.+...+... +.+ +..+|. +..++..+. ..... .+|+.+ ..+.+|+++...-+..++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 469999999999999999887 454 556787 655555443 11111 577776 2457999998766555531
Q ss_pred --------hHHHHHHHH---HHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 274 --------EECVKILKN---CKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 274 --------~~~~~~L~~---i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
+..-.++.+ +.+.++| +++++|.+..-.. .....+.+.+.+.|+
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l~ 141 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKNFAS--------------------HDNGNTLEVVKNTMN 141 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGGGGT--------------------GGGGHHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHHHHh--------------------ccccHHHHHHHHHHH
Confidence 111123333 3334566 5778887642210 011125677888899
Q ss_pred hcCCccce
Q 017835 343 EAGFSDYK 350 (365)
Q Consensus 343 ~aGf~~~~ 350 (365)
+.||.+..
T Consensus 142 ~~GY~v~~ 149 (327)
T 2c7p_A 142 ELDYSFHA 149 (327)
T ss_dssp HTTBCCEE
T ss_pred hCCCEEEE
Confidence 99998643
No 423
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=90.52 E-value=0.11 Score=40.13 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=45.3
Q ss_pred HHHHcCcccccccCCCCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEec
Q 017835 38 CAIQLGIPDIIHNHAKPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYIL 103 (365)
Q Consensus 38 ~a~~lglf~~L~~~~~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~ 103 (365)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... |+ ..+|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~~~-~~-~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLHTD-TG-ESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEECT-TS-CEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEEeC-CC-ceEEEe
Confidence 344566777776544799999999998 56 578899999999999999986531 11 345764
No 424
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=90.06 E-value=1.6 Score=34.41 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=53.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCceeccccCCCC-c
Q 017835 20 QAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFFALQKTSENE-Q 97 (365)
Q Consensus 20 ~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~-~ 97 (365)
..++...+.+.....+|...+.- + .+..|+++|++.++ + ....+++.|+.|+..|++++.....+. .
T Consensus 19 ~~~~~~~l~~~tR~~IL~~Ll~~------p--~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~~ 87 (151)
T 3u1d_A 19 ELERRRFVLHETRLDVLHQILAQ------P--DGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKSV 87 (151)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHS------T--TSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTTS
T ss_pred HHHHHHHhcchHHHHHHHHHHcC------C--CCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCccc
Confidence 44555555566666655554432 1 14689999999988 7 578999999999999999965321000 0
Q ss_pred cc----eEecCccchh
Q 017835 98 EE----GYILTSASKL 109 (365)
Q Consensus 98 ~~----~y~~t~~~~~ 109 (365)
.+ .|.+|+.++.
T Consensus 88 rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 88 DDPPTTFYAVTGEGIA 103 (151)
T ss_dssp SSCCCEEEEECHHHHH
T ss_pred CCCCceEEEECHHHHH
Confidence 12 6999999984
No 425
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=89.94 E-value=0.23 Score=39.12 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=44.8
Q ss_pred HHcCcccccccCCCCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.+.-|++.|...+++.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... ++ ..+|.+.
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~-~~-~~~Y~~~ 87 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTYG-DA-SSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECCT-TS-CCEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEeeC-CC-ceEEECC
Confidence 4455777776544799999999998 55 568899999999999999986531 11 3457654
No 426
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.78 E-value=0.23 Score=36.42 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|..+||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 68999999999999 5789999999999999999875
No 427
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=89.57 E-value=0.69 Score=46.36 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=57.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHC-------CC-----CeEEEeec-h---HHHHhcc-----------------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKF-------PH-----IECTVFDQ-P---HVVADLK----------------------- 240 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~----------------------- 240 (365)
+.-+|+|+|-|+|.....+.+.+ |. ++++.++. | ..+..+-
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999999887776643 22 56888875 3 2222110
Q ss_pred --c----CC--CeEEEeCCCCC---CC-----CCceEEEecccc-ccCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 241 --S----NG--NLKYVGGNMFE---AI-----PPADAVLIKCVL-HNWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 241 --~----~~--~i~~~~~d~~~---~~-----~~~D~i~~~~vl-h~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+ .. ++++.-||+.+ .+ ..+|.+++--.- +.-++--..++++.+.+.++| |+++.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEE
Confidence 0 11 45667888765 22 248988874321 111221125688999999998 66544
No 428
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=89.55 E-value=0.23 Score=41.27 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=43.4
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+++....+..|+..|.+ ++.|..+||+.+|+ .+..+.+.|+.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 33444556677888874 79999999999999 578999999999999999986
No 429
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=89.52 E-value=0.094 Score=36.79 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=37.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCC-CCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHP-TKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~-~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|++.|.. .++.|+.||++.++..+ -+...+.++|+.|...|++.+..
T Consensus 12 ~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 344555544 26899999999997310 04688999999999999999875
No 430
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=89.44 E-value=0.097 Score=44.05 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=48.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.|+..|... ++.|..+||+.+++ +...+.++|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 51 ~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 51 HHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 4455566543 68999999999999 679999999999999999987522221122588999887544
No 431
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=89.36 E-value=1.2 Score=39.05 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=70.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC----CC---CceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA----IP---PADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~----~~---~~D~i~~~~v 267 (365)
+...+||+=+|||.+++++++. .-+++.+|. +..++..++ ..+++++..|.++. .| .+|+|++---
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred cCCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 3567899999999999999983 568999999 777776664 46899999997661 12 4999998554
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
... ..+..++++.+.+..+- .++|.++|-=++...
T Consensus 169 Ye~--k~~~~~vl~~L~~~~~r-~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 169 YER--KEEYKEIPYAIKNAYSK-FSTGLYCVWYPVVNK 203 (283)
T ss_dssp CCS--TTHHHHHHHHHHHHHHH-CTTSEEEEEEEESSH
T ss_pred CCC--CcHHHHHHHHHHHhCcc-CCCeEEEEEEeccch
Confidence 431 12345666666654331 117888887666543
No 432
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=89.11 E-value=0.2 Score=39.54 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=39.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|+..|.. +++.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 5 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 4556777775 378999999999999 579999999999999999874
No 433
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=89.04 E-value=0.096 Score=39.04 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=36.1
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.|+..+...+.+.|..+||+.+|+ +...+++.|+.|...|++...
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 344444322247999999999999 578899999999999999876
No 434
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=89.00 E-value=0.11 Score=42.78 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=51.0
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCceeccccC--CCCccceEecCccchhh
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFFALQKTS--ENEQEEGYILTSASKLL 110 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~~~y~~t~~~~~l 110 (365)
++|.-=.++.|+..|.. ++.|+.+|++.++ + +...+.+.|+.|...|+++..... .++....|++++.+-.+
T Consensus 18 ~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~ 92 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA 92 (182)
T ss_dssp HHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence 34444467778888875 7999999999996 7 467899999999999999865421 01112458887765433
No 435
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=89.00 E-value=0.27 Score=38.73 Aligned_cols=55 Identities=11% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++|..+||+.+++ +...+.++++.|...|++.... .+|+..-...+|+.|+.+.
T Consensus 51 ~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~-~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 51 IDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMA-GADARCKRIELTAKGRAAL 105 (148)
T ss_dssp ---CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeC-CCCCCeeEEEECHHHHHHH
Confidence 56899999999999 6799999999999999995432 1221112477888776443
No 436
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=88.98 E-value=0.51 Score=44.09 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=42.8
Q ss_pred cCCCeEEEecCCccHHHHHHH-HHCCC-CeEEEeec-hHHHHhccc---------C-CCeEEEeCCCCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIA-KKFPH-IECTVFDQ-PHVVADLKS---------N-GNLKYVGGNMFE 254 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---------~-~~i~~~~~d~~~ 254 (365)
+++..++|||++.|.++..++ +..+. .+++.++. |...+..++ . .+++++..-+.+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 678999999999999999988 56665 79999998 777666553 2 567776654443
No 437
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=88.70 E-value=0.44 Score=32.63 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=35.6
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 46 DIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 46 ~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+.|.. +...|+.+||.++|+ +...+.|.|--|...|.+....
T Consensus 22 ~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 22 LSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCC
Confidence 35665 245999999999999 5688999999999999998875
No 438
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=88.55 E-value=1.3 Score=35.09 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=40.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE 254 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~ 254 (365)
.-..-|+|+|=|+|..=-.|.+.+|+-++.++|..-.+.-....+.=.++.||+.+
T Consensus 39 ~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 39 GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 34568999999999999999999999999999962222111113344567777766
No 439
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=88.43 E-value=0.086 Score=40.05 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHcC----CCCCCcchHHHHHHHHHhcCceeccccCCCCccce---EecCccchhhh
Q 017835 53 KPMTLNQLLTTLQ----IHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG---YILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~----~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~---y~~t~~~~~l~ 111 (365)
++.|+.+||+.++ + ....+.++|+.|...|++.+... +.+ +.+|+.+..+.
T Consensus 23 ~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~-----~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 23 KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD-----NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE-----TTEEEEEESSCHHHHHH
T ss_pred CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec-----CCeEEEEEecCHHHHHH
Confidence 6899999999999 5 46889999999999999998752 222 46777776544
No 440
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=88.36 E-value=0.11 Score=38.18 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=38.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCC-CCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIH-PTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~-~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|+..|... ++.|+.||++.++.. +-+...+.++|+-|...|++.+..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 34556666542 689999999999852 013578999999999999999976
No 441
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=88.32 E-value=0.91 Score=41.08 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=78.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhccc-CCCeEEEeCCCCCC----CC--CceEEEeccccccCC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIE-CTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA----IP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~----~~--~~D~i~~~~vlh~~~ 272 (365)
.+++|+=||.|.+...+.+..-+.+ +.++|. +..++..+. .....+..+|+.+- ++ .+|+++...-+..++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 4899999999999999998843334 567787 555554443 34455677888761 23 589999876655543
Q ss_pred ---------hhHHHHHHHHHHHhcccCCCC-cEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 273 ---------DEECVKILKNCKKAIAINGKA-GKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 273 ---------~~~~~~~L~~i~~~L~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
|+ .-.++.++.+.++.. . -+++++|.+..-.. + .+.+.+.+.|+
T Consensus 84 ~ag~~~~~~d~-r~~L~~~~~r~i~~~--~~P~~~vlENV~gl~~---------------------~--~~~~~i~~~l~ 137 (333)
T 4h0n_A 84 RNGKYLDDNDP-RTNSFLYLIGILDQL--DNVDYILMENVKGFEN---------------------S--TVRNLFIDKLK 137 (333)
T ss_dssp ETTEECCTTCT-TSCCHHHHHHHGGGC--TTCCEEEEEECTTGGG---------------------S--HHHHHHHHHHH
T ss_pred hhhhccCCcCc-ccccHHHHHHHHHHh--cCCCEEEEecchhhhh---------------------h--hHHHHHHHHHH
Confidence 22 123455555544320 1 36788887652210 0 13467888899
Q ss_pred hcCCccceEE
Q 017835 343 EAGFSDYKIT 352 (365)
Q Consensus 343 ~aGf~~~~~~ 352 (365)
+.||.+....
T Consensus 138 ~~GY~v~~~v 147 (333)
T 4h0n_A 138 ECNFIYQEFL 147 (333)
T ss_dssp HTTEEEEEEE
T ss_pred hCCCeEEEEE
Confidence 9999865443
No 442
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=88.31 E-value=0.32 Score=37.81 Aligned_cols=60 Identities=12% Similarity=0.272 Sum_probs=44.3
Q ss_pred HHcCcccccccCC-CCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 40 IQLGIPDIIHNHA-KPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 40 ~~lglf~~L~~~~-~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.+.-|++.|...+ ++.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... ++ ..+|.++
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~-~~-~~~Y~~~ 84 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHNFD-GG-HAVFELA 84 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEECSS-SS-SCEEEES
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEEeC-CC-ceEEEeC
Confidence 3455777777554 689999999998 55 568899999999999999986521 11 3467753
No 443
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=88.24 E-value=0.56 Score=34.26 Aligned_cols=53 Identities=8% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHcCccc-ccccCCCCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 35 SLKCAIQLGIPD-IIHNHAKPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 35 ~L~~a~~lglf~-~L~~~~~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+...++..|.+ .+.. +..+ |..+||+.+|+ ....+++-|+.|...|++....
T Consensus 15 ~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 344445555665 3443 3456 99999999999 5688999999999999998875
No 444
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=87.95 E-value=0.4 Score=37.41 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=46.0
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCC--CCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQI--HPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~--~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
..+.-|++.|...+++.|++||.+.+.- +..+..-++|.|+.|+..|++.+.... ++ ..+|.+..
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~g-~~~Y~~~~ 80 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTA-EG-ESVYRRCS 80 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECT-TS-CEEEECCS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcC-CC-ceEEEECC
Confidence 4456677777765579999999998831 111567899999999999999986521 11 34677643
No 445
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=87.92 E-value=0.24 Score=38.83 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=38.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..+||+++|+ ++..+.+.|+.|...|++.+.
T Consensus 7 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3456666665 378999999999999 579999999999999999864
No 446
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=87.82 E-value=0.24 Score=39.08 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=38.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|+..|.. +++.|..+||+++|+ ++..+.+.|+.|...|++.+.
T Consensus 9 ~~~iL~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAA-DGRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3455666664 378999999999999 578999999999999999764
No 447
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=87.77 E-value=1.7 Score=43.36 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=56.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHC-------CC-----CeEEEeec----hHHHHhc-c----------c-----------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKF-------PH-----IECTVFDQ----PHVVADL-K----------S----------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a-~----------~----------- 241 (365)
+.-+|+|+|-|+|.......+.+ |. ++++.++. ++.+..+ . +
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34699999999998877765543 22 56888875 2233211 0 0
Q ss_pred -------C--CCeEEEeCCCCC---CC-----CCceEEEeccccc-cCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 242 -------N--GNLKYVGGNMFE---AI-----PPADAVLIKCVLH-NWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 242 -------~--~~i~~~~~d~~~---~~-----~~~D~i~~~~vlh-~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
. -++++.-+|+.+ .+ ..+|++++--.-- .-++--..++|+.+++.++| ||++.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE---EEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC---CCEEE
Confidence 1 233456677765 12 2489988743221 11111135689999999999 66654
No 448
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=87.23 E-value=0.3 Score=40.28 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=43.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc-eeccccCCCCccceEecCcc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF-FALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~~y~~t~~ 106 (365)
...|++.|...+++.|+.+||+.+|+ ..+.+++-|+.|...|+ +... .+.|.+.+.
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~-------~~Gy~l~~~ 79 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-------TTEEECCTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE-------CCEEEECCc
Confidence 45567777643357999999999999 57999999999999999 7654 466776643
No 449
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=87.22 E-value=0.31 Score=39.10 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+..|++.|.. ++++|..+||+++|+ .+..+.+-++.|...|++...
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 35567788876 489999999999999 579999999999999999854
No 450
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=87.17 E-value=0.33 Score=38.48 Aligned_cols=62 Identities=11% Similarity=0.303 Sum_probs=46.1
Q ss_pred HHHHcCcccccccCCCCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 38 CAIQLGIPDIIHNHAKPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 38 ~a~~lglf~~L~~~~~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... ++ ..+|...
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~-~~-~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLETS-KS-GRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEET-TT-EEEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEEeC-CC-ceEEEec
Confidence 445566788887545799999999988 45 568899999999999999986531 11 2357653
No 451
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=86.90 E-value=0.29 Score=39.18 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=38.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..|||+++|+ ++..+.+.|+.|...|++...
T Consensus 12 ~~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQE-NGRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence 3445666665 378999999999999 578999999999999999864
No 452
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=86.79 E-value=0.29 Score=42.41 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=50.3
Q ss_pred HcCcccccccCC-CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHA-KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~-~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|...+ ++.|..+||+.+++ ++..+.++++-|...|++.+....+|...-...+|+.++.+.
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 344566666433 25999999999999 679999999999999999997633222122478888887544
No 453
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=86.67 E-value=0.27 Score=38.89 Aligned_cols=46 Identities=9% Similarity=0.173 Sum_probs=38.7
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..+||+++|+ ++..+.+.|+.|...|++...
T Consensus 10 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMG-NARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHH-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence 3456666765 378999999999999 578999999999999999964
No 454
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=86.47 E-value=3.7 Score=36.68 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=75.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeE-EEeec-hHHHHhcccCCCeEEEeCCCCC----CCCCceEEEeccccccCC---
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIEC-TVFDQ-PHVVADLKSNGNLKYVGGNMFE----AIPPADAVLIKCVLHNWN--- 272 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~~~--- 272 (365)
.+|||+=||.|.+...|.+. +.++ .++|. +..++..+....-.++.+|+.+ .+|..|+++...-+..++
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag 78 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGG 78 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETT
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCC
Confidence 37899999999999998887 4554 46676 5555544432233567888876 356799998865554432
Q ss_pred ------hhHHHHHHHHH---HHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh
Q 017835 273 ------DEECVKILKNC---KKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE 343 (365)
Q Consensus 273 ------~~~~~~~L~~i---~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 343 (365)
|+. -.++.++ .+.++| +++++|.+..-.. ........++.+.|++
T Consensus 79 ~~~g~~d~R-~~L~~~~~r~i~~~~P-----k~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l~~ 132 (331)
T 3ubt_Y 79 SLRGIDDPR-GKLFYEYIRILKQKKP-----IFFLAENVKGMMA--------------------QRHNKAVQEFIQEFDN 132 (331)
T ss_dssp EECCTTCGG-GHHHHHHHHHHHHHCC-----SEEEEEECCGGGG--------------------CTTSHHHHHHHHHHHH
T ss_pred CccCCCCch-hHHHHHHHHHHhccCC-----eEEEeeeeccccc--------------------ccccchhhhhhhhhcc
Confidence 332 2344443 444566 6788887642110 0111245677888899
Q ss_pred cCCccc
Q 017835 344 AGFSDY 349 (365)
Q Consensus 344 aGf~~~ 349 (365)
.||.+.
T Consensus 133 ~GY~v~ 138 (331)
T 3ubt_Y 133 AGYDVH 138 (331)
T ss_dssp HTEEEE
T ss_pred CCcEEE
Confidence 998754
No 455
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=86.18 E-value=2.1 Score=39.42 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=38.7
Q ss_pred chHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-------CCCeEEEeechHHHH
Q 017835 169 TRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-------PHIECTVFDQPHVVA 237 (365)
Q Consensus 169 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~~ 237 (365)
|+....|.+.+..... .+.+.+. .+..-+|+|+|+|+|.++..+++.. ..+++..+|.++.+.
T Consensus 55 peis~~FGe~la~~~~----~~w~~~g--~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 55 PEISQMFGELLGLWSA----SVWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp HHHCHHHHHHHHHHHH----HHHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CchHHHHHHHHHHHHH----HHHHHcC--CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 4555566655543321 1112222 2344689999999999998887652 345899999844333
No 456
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=85.84 E-value=0.29 Score=38.68 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=38.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 9 ~~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3456666665 378999999999999 578999999999999999864
No 457
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=85.71 E-value=0.3 Score=37.99 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=37.7
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|+..|.. +++.|..+||+.+|+ ++..+.+.|+.|...|++...+
T Consensus 7 ~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 7 KIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeccc
Confidence 345556654 368999999999999 5789999999999999998653
No 458
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=85.63 E-value=0.34 Score=39.31 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+..|++.|.. ++..|..|||+++|+ .+..+.+.|+.|...|++...
T Consensus 28 ~d~~IL~~L~~-~~~~s~~eLA~~lgl---S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEee
Confidence 34566677765 378999999999999 578999999999999999864
No 459
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=85.62 E-value=4.5 Score=36.84 Aligned_cols=93 Identities=20% Similarity=0.187 Sum_probs=60.5
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHHhcccCCCeEEEeC---CCCCC----CC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHI-ECTVFDQ-PHVVADLKSNGNLKYVGG---NMFEA----IP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~~----~~-~~D~i~~~~ 266 (365)
.+++.+||-+|+|. |.++..+++.. ++ +++++|. +...+.+++..--.++.. |+.+. .+ .+|+|+-.-
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~ 266 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST 266 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence 56788999999886 78888888875 45 6889986 666666654111112221 11110 11 588887543
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
- . ...++.+.+.|+| +|+++++-..
T Consensus 267 g-----~---~~~~~~~~~~l~~---~G~iv~~G~~ 291 (371)
T 1f8f_A 267 G-----S---PEILKQGVDALGI---LGKIAVVGAP 291 (371)
T ss_dssp C-----C---HHHHHHHHHTEEE---EEEEEECCCC
T ss_pred C-----C---HHHHHHHHHHHhc---CCEEEEeCCC
Confidence 2 1 2457888999999 8999887543
No 460
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=85.58 E-value=0.27 Score=31.42 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=39.3
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
-.|++.|..++|=+.+..+++.+|+ +.+-+..+|+-|.+.|++.-+
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 3467777777788999999999999 578899999999999998754
No 461
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=85.52 E-value=0.35 Score=38.18 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|+..|.. +++.|..+||+++|+ ++..+.+.++.|...|++.+.
T Consensus 11 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSE-NSRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 4456667765 378999999999999 578999999999999999864
No 462
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=85.29 E-value=6.7 Score=35.12 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=61.2
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---C----CCCceEEEecccc
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---A----IPPADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~~~D~i~~~~vl 268 (365)
.+++.+||-+|+|. |.++..+++.. +++++++|. ++-.+.+++..--.++..+-.+ . .+.+|+++....
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 57788999999875 88888898876 569999997 7767776652211122111111 0 125788866432
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
. ...++.+.+.|+| +|+++++-.
T Consensus 242 ----~---~~~~~~~~~~l~~---~G~iv~~G~ 264 (340)
T 3s2e_A 242 ----S---PKAFSQAIGMVRR---GGTIALNGL 264 (340)
T ss_dssp ----C---HHHHHHHHHHEEE---EEEEEECSC
T ss_pred ----C---HHHHHHHHHHhcc---CCEEEEeCC
Confidence 1 3467888899999 899888754
No 463
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=85.19 E-value=0.4 Score=38.87 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=38.7
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..+||+++|+ ++..+.+.|+.|...|++...
T Consensus 19 d~~IL~~L~~-~~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKK-DARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 3456677765 378999999999999 578999999999999999864
No 464
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=84.96 E-value=1.1 Score=38.16 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..++|+++++ .+..+.+.++.|...|++.+.... ....+++|+.++.+.
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~~---R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVTK---RGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEcC---CeEEEEECHHHHHHH
Confidence 68999999999999 679999999999999999997310 026699999998655
No 465
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=84.44 E-value=0.43 Score=39.61 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|.|..|||+++|++ ...+.+.|+.|...|++.+..
T Consensus 23 ~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 23 YPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence 589999999999995 557999999999999999874
No 466
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=84.43 E-value=0.71 Score=39.32 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=41.2
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.+..+||+.+++ +...+.+.|+.|...|++++.. +..+.+|+.++.+.
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG------DRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC------CccEEECHHHHHHH
Confidence 345999999999 6788999999999999999986 57899999887443
No 467
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=84.36 E-value=6 Score=36.07 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=60.2
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe---CCCCC---C---C--CCceEEEe
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG---GNMFE---A---I--PPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~---~---~--~~~D~i~~ 264 (365)
.+++.+||-+|+|. |.++..+++...-.+++++|. +.-.+.+++..--.++. .|+.+ . . ..+|+|+-
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid 259 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE 259 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence 56788999999876 778888888764338899987 66666665411111111 11111 1 1 15898876
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.- .. ...++.+.+.|++ ||+++++-...
T Consensus 260 ~~-----G~---~~~~~~~~~~l~~---~G~vv~~G~~~ 287 (370)
T 4ej6_A 260 CA-----GV---AETVKQSTRLAKA---GGTVVILGVLP 287 (370)
T ss_dssp CS-----CC---HHHHHHHHHHEEE---EEEEEECSCCC
T ss_pred CC-----CC---HHHHHHHHHHhcc---CCEEEEEeccC
Confidence 42 21 2467888899999 89998876543
No 468
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=84.07 E-value=5.4 Score=34.83 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=50.9
Q ss_pred CeEEEecCCcc--HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHH
Q 017835 202 NTLVDVGGGTG--TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVK 278 (365)
Q Consensus 202 ~~iLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~ 278 (365)
.+|.=||+|.= .++..|.+..++.+++++|. +...+.+.+...+.....|..+.....|+|+++- +......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 57888998863 33445555555678999998 6656555432211112233332334689988854 4445577
Q ss_pred HHHHHHHh-ccc
Q 017835 279 ILKNCKKA-IAI 289 (365)
Q Consensus 279 ~L~~i~~~-L~p 289 (365)
+++++... ++|
T Consensus 82 v~~~l~~~~l~~ 93 (290)
T 3b1f_A 82 FIKILADLDLKE 93 (290)
T ss_dssp HHHHHHTSCCCT
T ss_pred HHHHHHhcCCCC
Confidence 88888888 887
No 469
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=84.02 E-value=5.4 Score=36.44 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=60.4
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHHhcccCCCeEEEeC-----CCCC---C-C-CCceEEEe
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHI-ECTVFDQ-PHVVADLKSNGNLKYVGG-----NMFE---A-I-PPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~i~~~~~-----d~~~---~-~-~~~D~i~~ 264 (365)
.+++.+||=+|+|. |.++..+++.. ++ +++++|. +.-.+.+++..--.++.. |+.+ . . ..+|+++-
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid 269 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE 269 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence 56788999999874 77888888875 45 8999996 777777765221112211 1111 0 1 15898876
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCC-cEEEEEeee
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKA-GKVIIIDIK 302 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~g-G~lli~e~~ 302 (365)
.-- . ...++.+.+.|++ | |+++++-..
T Consensus 270 ~~g-----~---~~~~~~~~~~l~~---g~G~iv~~G~~ 297 (378)
T 3uko_A 270 CIG-----N---VSVMRAALECCHK---GWGTSVIVGVA 297 (378)
T ss_dssp CSC-----C---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred CCC-----C---HHHHHHHHHHhhc---cCCEEEEEccc
Confidence 432 2 3457888899999 7 998887653
No 470
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=83.93 E-value=0.4 Score=37.24 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=37.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCC-CCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIH-PTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~-~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..|+..|....++.|+.+|++.++.. +.+...+.++|+-|...|++.+..
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 334445554312689999999999821 005688999999999999999875
No 471
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=83.89 E-value=0.66 Score=36.02 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|+.+||+.+++ +...+.+.|+.|...|++.+..
T Consensus 40 ~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 40 KPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 68999999999999 5789999999999999999863
No 472
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=83.79 E-value=1.1 Score=38.12 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=41.5
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+.+..+||+.+++ ++..+.++|+.|...|++.+.. +..+.+|+.++.+
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~ 71 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS------DRSLQMTPTGRTL 71 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSBEEECHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC------CCCeEECHHHHHH
Confidence 4466999999999 6789999999999999999985 5779999998743
No 473
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=83.49 E-value=5.6 Score=35.95 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=60.0
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHHhcccCCCeEEEeCC------CCCC-----CCCceEEE
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHI-ECTVFDQ-PHVVADLKSNGNLKYVGGN------MFEA-----IPPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~i~~~~~d------~~~~-----~~~~D~i~ 263 (365)
.+++.+||-+|+|. |.++..+++.. ++ +++++|. +.-.+.+++..--.++..+ +.+. ...+|+++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 56788999999876 78888888876 55 8999987 6666666642111222211 1110 13589887
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
-.-- . ...++.+.+.|+| +|+++++-.
T Consensus 248 d~~g-----~---~~~~~~~~~~l~~---~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECTG-----A---EASIQAGIYATRS---GGTLVLVGL 274 (356)
T ss_dssp ECSC-----C---HHHHHHHHHHSCT---TCEEEECSC
T ss_pred ECCC-----C---hHHHHHHHHHhcC---CCEEEEEec
Confidence 6432 1 2357788889999 899988754
No 474
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=83.19 E-value=0.88 Score=34.45 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=42.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
.-.|.+.+.. .|.++.+|++.+++ ++..+..+|+.|...|.+.... ++.|.++.
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~------~~~~~~~~ 62 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV------KDRYYRND 62 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec------CCceECHH
Confidence 3445566653 57799999999999 6788999999999999999876 46665443
No 475
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=83.17 E-value=1 Score=33.82 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=47.0
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcC--------CCCCCc-chHHHHHHHHHhcCceeccccCCCC-ccceEecCccchh
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQ--------IHPTKT-QCVYHLMRILVHSGFFALQKTSENE-QEEGYILTSASKL 109 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~--------~~~~~~-~~l~~lL~~L~~~g~l~~~~~~~~~-~~~~y~~t~~~~~ 109 (365)
.++-|+..|.. +|.+.-+|++.++ + ++ ..+.+.|+-|...|+++......++ ....|++|+.++.
T Consensus 14 ~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~ 88 (118)
T 2esh_A 14 LASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKL 88 (118)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHH
Confidence 34444455554 6899999999883 4 67 8899999999999999876421111 0135999999974
Q ss_pred hh
Q 017835 110 LL 111 (365)
Q Consensus 110 l~ 111 (365)
+.
T Consensus 89 ~l 90 (118)
T 2esh_A 89 YL 90 (118)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 476
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=82.66 E-value=0.96 Score=34.65 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
...|..+||+++++ ++..+.+.|+.|...|++....
T Consensus 50 ~~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 50 LFPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SSCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34799999999999 6799999999999999999864
No 477
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=82.55 E-value=6.7 Score=31.86 Aligned_cols=89 Identities=16% Similarity=0.060 Sum_probs=56.0
Q ss_pred ccCCCeEEEecC--CccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC---------C--CCceEEE
Q 017835 198 FEGLNTLVDVGG--GTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA---------I--PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~---------~--~~~D~i~ 263 (365)
.+++.+||.+|+ |.|..+..++... +.+++++|. ++..+.+++..--... |..++ . ..+|+++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~D~vi 112 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVG--DSRSVDFADEILELTDGYGVDVVL 112 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEE--ETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEe--eCCcHHHHHHHHHHhCCCCCeEEE
Confidence 567889999994 5677777666654 568999887 5555555432111111 22221 1 1488887
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+. .. ..++.+.+.|+| ||+++++-.
T Consensus 113 ~~~-----g~----~~~~~~~~~l~~---~G~~v~~g~ 138 (198)
T 1pqw_A 113 NSL-----AG----EAIQRGVQILAP---GGRFIELGK 138 (198)
T ss_dssp ECC-----CT----HHHHHHHHTEEE---EEEEEECSC
T ss_pred ECC-----ch----HHHHHHHHHhcc---CCEEEEEcC
Confidence 543 11 357788899999 899888754
No 478
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=82.50 E-value=1.2 Score=36.85 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+|.+..+||+.+++ .+..++..++-|...|+++.. .+..++|+.++.+
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~-------~~Gv~LTe~G~~~ 76 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSK-------QRGHFLTLKGKEI 76 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEe-------CCCeEECHHHHHH
Confidence 58999999999999 579999999999999999987 4789999988743
No 479
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=82.26 E-value=5.2 Score=36.83 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=62.9
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHHhcccCCCeEEEeC---CC-CCC-----CC-CceEEEe
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHI-ECTVFDQ-PHVVADLKSNGNLKYVGG---NM-FEA-----IP-PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~i~~~~~---d~-~~~-----~~-~~D~i~~ 264 (365)
.+++.+||-+|+|. |.++..+++.. ++ +++++|. +...+.+++.. ..++.. |+ .+. .. .+|+|+-
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid 260 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEVDCGVD 260 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCCCEEEE
Confidence 67789999999887 88888888876 45 8999997 66677776522 233322 21 110 01 5899876
Q ss_pred cccccc---------CChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 265 KCVLHN---------WNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 265 ~~vlh~---------~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.---.. .+. ...++.+.+.|+| ||+++++-..
T Consensus 261 ~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 261 AVGFEAHGLGDEANTETP---NGALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp CSCTTCBCSGGGTTSBCT---THHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCCcccccccccccccc---HHHHHHHHHHHhc---CCEEEEeccc
Confidence 532210 011 2357888899999 8998876543
No 480
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=82.20 E-value=1.2 Score=30.72 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+.+++.++|+.+++. ..+.++.++.+|.+.|++++.+
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 679999999999993 2589999999999999999975
No 481
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=82.17 E-value=0.4 Score=37.97 Aligned_cols=60 Identities=15% Similarity=0.315 Sum_probs=43.9
Q ss_pred HHcCcccccccCC-CCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 40 IQLGIPDIIHNHA-KPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 40 ~~lglf~~L~~~~-~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.+.-|++.|...+ .+.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... ++ ..+|.++
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~-~~-~~~Y~~~ 83 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHHFE-GG-KSVFELS 83 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEECG-GG-CEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEEeC-CC-ceEEEec
Confidence 3455677776544 689999999988 44 567899999999999999986421 11 2457653
No 482
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=82.12 E-value=2.7 Score=37.93 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=59.8
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC-CceEEEeccccccCChh
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP-PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~-~~D~i~~~~vlh~~~~~ 274 (365)
.+++.+||-+|+|. |.++..+++.. ++++++++. +.-.+.+++..--.++ .+. +... .+|+|+-.-- .+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~-~~~~~~~D~vid~~g-----~~ 245 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY-TDP-KQCKEELDFIISTIP-----TH 245 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE-SSG-GGCCSCEEEEEECCC-----SC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec-CCH-HHHhcCCCEEEECCC-----cH
Confidence 67788999999876 78888888876 569999986 6666666652211122 221 1222 6898875322 11
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..++.+.+.|+| +|+++++-.
T Consensus 246 ---~~~~~~~~~l~~---~G~iv~~G~ 266 (348)
T 3two_A 246 ---YDLKDYLKLLTY---NGDLALVGL 266 (348)
T ss_dssp ---CCHHHHHTTEEE---EEEEEECCC
T ss_pred ---HHHHHHHHHHhc---CCEEEEECC
Confidence 246778889999 899998754
No 483
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=82.02 E-value=6.4 Score=35.04 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=53.4
Q ss_pred CCeEEEecCCcc--HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCCCceEEEeccccccCChhHH
Q 017835 201 LNTLVDVGGGTG--TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 201 ~~~iLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
..+|.=||+|.= .++..|.+.....+++++|. +..++.+.+..-+.....|..+ ....+|+|+++- +....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 368999998753 34444555433238999998 6666666543322222334433 345789998864 44456
Q ss_pred HHHHHHHHHhccc
Q 017835 277 VKILKNCKKAIAI 289 (365)
Q Consensus 277 ~~~L~~i~~~L~p 289 (365)
.++++++...++|
T Consensus 108 ~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 108 REIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHhhccCC
Confidence 7889999999998
No 484
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=81.99 E-value=1.4 Score=32.24 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=35.8
Q ss_pred CcccccccCCCCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|+..|.. ++.+ |..+||+.+|+ ...-+++-|+.|...|++....
T Consensus 32 ~I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 33444553 2445 99999999999 5788999999999999999764
No 485
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=81.90 E-value=12 Score=28.06 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEecccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHN 270 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~ 270 (365)
..+|+=+|+| ..+..+++.+ .+.+++++|. +...+.+.....+.++.+|..++ ...+|+++..-
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 3578888875 4444443332 3568999998 65555554323566777777542 34689887763
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+++.....+..+.+.+++ +++++
T Consensus 78 -~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred -CCchHHHHHHHHHHHcCC----CEEEE
Confidence 223333445556666776 45554
No 486
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=81.76 E-value=1 Score=32.27 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+++..+|++++++ +..-+.+.|+.|...|++.+..
T Consensus 35 ~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 35 KGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp TCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 48999999999999 5788999999999999999653
No 487
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=81.29 E-value=1.3 Score=33.33 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=46.0
Q ss_pred HHcCcccccccCCCCCCHHHHHHHc------CCCCCCcchHHHHHHHHHhcCceeccccC-CCC-ccceEecCccchhh
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTL------QIHPTKTQCVYHLMRILVHSGFFALQKTS-ENE-QEEGYILTSASKLL 110 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~------~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t~~~~~l 110 (365)
+++=|+..|.. +|.+.-+|++.+ ++ ++..+...|+-|...|+++..... +++ ....|++|+.++..
T Consensus 12 l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~ 85 (117)
T 4esf_A 12 LEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQE 85 (117)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHH
Confidence 33334445554 789999999887 55 678999999999999999976321 111 11349999999743
No 488
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=80.92 E-value=14 Score=28.15 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccC
Q 017835 201 LNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNW 271 (365)
Q Consensus 201 ~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~ 271 (365)
..+|+=+|||. |......+.. .+.+++++|. ++.++.+++ ..+.++.+|..++ ...+|++++.--
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----
Confidence 35788888865 3333333333 3678999998 777777764 5778889998773 125888876431
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
++.....+.. ..+.+.| +.+++.
T Consensus 81 ~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp CHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred ChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 2233333333 4455666 565554
No 489
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=80.11 E-value=18 Score=30.94 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred CeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCCCceEEEeccccccCChhHHH
Q 017835 202 NTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIPPADAVLIKCVLHNWNDEECV 277 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~ 277 (365)
++||=.| + |..+..+++.+ .+.++++++. +....... ..+++++.+|+.+ ...++|+|+.........++...
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 5789898 4 88888777764 2568888887 43333332 3679999999876 34468888776554433344444
Q ss_pred HHHHHHHHhcccCCCCcEEEEEee
Q 017835 278 KILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 278 ~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+++.+.+.-.. -.+++.+..
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~Ss 103 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYLST 103 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEEEE
T ss_pred HHHHHHHhhcCC---ceEEEEeec
Confidence 555555443122 256666543
No 490
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=79.80 E-value=1.3 Score=42.16 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=49.3
Q ss_pred cCcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
..|+..|... ++++|..+||+++++ +...+.|+|+-|...|++++....+|...-...+|+.++.+.
T Consensus 407 ~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 407 IYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 3455555542 168999999999999 679999999999999999997633332223478888886543
No 491
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=79.52 E-value=22 Score=31.73 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=58.6
Q ss_pred ccCCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe---CCCCCC----CC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTG-TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG---GNMFEA----IP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~~----~~--~~D~i~~~~ 266 (365)
.+++.+||=+|+|++ .++..+++..-..+++++|. ++-.+.+++..--.++. .|+.+. .. .+|+++...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~ 240 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCA 240 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEec
Confidence 567889999999875 55666677677889999997 66566666522212221 122111 11 366665533
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.- ...+....+.+++ +|+++++-.
T Consensus 241 ~~--------~~~~~~~~~~l~~---~G~~v~~g~ 264 (348)
T 4eez_A 241 VA--------RIAFEQAVASLKP---MGKMVAVAV 264 (348)
T ss_dssp SC--------HHHHHHHHHTEEE---EEEEEECCC
T ss_pred cC--------cchhheeheeecC---CceEEEEec
Confidence 21 3467888899999 899887653
No 492
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=79.49 E-value=1.1 Score=33.76 Aligned_cols=69 Identities=25% Similarity=0.354 Sum_probs=47.3
Q ss_pred HHHHcCcccccccCCCCCCHHHHHHHcC------CCCCCcchHHHHHHHHHhcCceecccc-CCCC-ccceEecCccchh
Q 017835 38 CAIQLGIPDIIHNHAKPMTLNQLLTTLQ------IHPTKTQCVYHLMRILVHSGFFALQKT-SENE-QEEGYILTSASKL 109 (365)
Q Consensus 38 ~a~~lglf~~L~~~~~~~t~~~la~~~~------~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~~~~~ 109 (365)
-.+++-|+..|.. +|.+.-+|++.++ + ++..+...|+.|...|+++.... .+++ ....|++|+.++.
T Consensus 13 g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~ 87 (117)
T 3elk_A 13 GLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKK 87 (117)
T ss_dssp HHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHH
T ss_pred hHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHH
Confidence 3344445555554 6889888988876 6 45889999999999999997532 1111 1125999999984
Q ss_pred hh
Q 017835 110 LL 111 (365)
Q Consensus 110 l~ 111 (365)
..
T Consensus 88 ~l 89 (117)
T 3elk_A 88 FL 89 (117)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 493
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=79.45 E-value=3.4 Score=37.23 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=62.8
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCC--CCCC----CC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGN--MFEA----IP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d--~~~~----~~--~~D~i~~~~v 267 (365)
.+++.+||-+|+|. |.++..+++.....+++++|. ++-.+.+++..--.++..+ +.+. .+ .+|+++-.-
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~- 247 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV- 247 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESS-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECC-
Confidence 56788999999876 788888888776789999987 6667766652211222211 1111 11 588887643
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.. ...++.+.+.|+| +|+++++-..
T Consensus 248 ----G~---~~~~~~~~~~l~~---~G~iv~~G~~ 272 (345)
T 3jv7_A 248 ----GA---QSTIDTAQQVVAV---DGHISVVGIH 272 (345)
T ss_dssp ----CC---HHHHHHHHHHEEE---EEEEEECSCC
T ss_pred ----CC---HHHHHHHHHHHhc---CCEEEEECCC
Confidence 22 2467888999999 8999987643
No 494
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=79.45 E-value=2.1 Score=36.44 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=42.0
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.-|.-.|.. ++.|+++||+.+|+ ++.-+...|.-|...|++++.. ++.....
T Consensus 168 ~~l~~~l~~--~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~------~~~~~~~ 219 (232)
T 2qlz_A 168 AILHYLLLN--GRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN------DNTVVLD 219 (232)
T ss_dssp HHHHHHHHS--SEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET------TTEEEEC
T ss_pred HHHHHHHhc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec------CCeEEec
Confidence 344445554 89999999999999 5799999999999999998775 5666544
No 495
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=78.66 E-value=17 Score=30.02 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=53.2
Q ss_pred eEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccCC
Q 017835 203 TLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNWN 272 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~~ 272 (365)
+|+=+|+ |..+..+++.+ .+..++++|. ++.++...+...+.++.+|..++ ...+|++++.- +
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-----~ 74 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT-----P 74 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC-----S
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec-----C
Confidence 4666665 66666665543 3678999998 66666654334678899998872 34689888743 3
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 273 DEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
++....++..+.+.+.| ..+++.
T Consensus 75 ~d~~n~~~~~~a~~~~~---~~~iia 97 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFG---VKRVVS 97 (218)
T ss_dssp CHHHHHHHHHHHHHTSC---CCEEEE
T ss_pred CcHHHHHHHHHHHHHcC---CCeEEE
Confidence 33334455555555555 355543
No 496
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=78.64 E-value=0.48 Score=35.92 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=37.3
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCC-CCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIH-PTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~-~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|+..|... +|.|+.+|++.++.+ +.+...+.++|+-|...|++.+..
T Consensus 13 ~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3344445543 689999999999741 014688999999999999999975
No 497
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=78.63 E-value=1.3 Score=39.88 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=43.6
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.|++.|.. ++..|.++||+.+++ .+..++|-|+.|...|++.+... ...|++.+..
T Consensus 9 ~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~-----g~GY~l~~~~ 64 (321)
T 1bia_A 9 KLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-----GKGYSLPEPI 64 (321)
T ss_dssp HHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-----TTEEECSSCC
T ss_pred HHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec-----CCCcEEeecc
Confidence 35566654 368999999999999 57999999999999999876542 3578886533
No 498
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=78.59 E-value=1 Score=36.62 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=44.7
Q ss_pred cCcccccccCCCCCCHHHHHHHc--------CCCCCCcchHHHHHHHHHhcCceeccccCCCC--ccceEecCccch
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTL--------QIHPTKTQCVYHLMRILVHSGFFALQKTSENE--QEEGYILTSASK 108 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~--------~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~~~y~~t~~~~ 108 (365)
+-|+..|.. +|.+.-+|++.+ ++ +...+++.|+-|...|+++......++ ....|++|+.|+
T Consensus 5 ~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~ 76 (179)
T 1yg2_A 5 HVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGR 76 (179)
T ss_dssp HHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHH
Confidence 334555654 799999999988 45 578999999999999999975421111 113599999997
No 499
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=78.55 E-value=20 Score=32.13 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe-C---CCCCC----C-----CCceEE
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG-G---NMFEA----I-----PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~-~---d~~~~----~-----~~~D~i 262 (365)
..++.+||-+|+|. |.++..+++.. +.+++++|. +.-.+.+++..--.++. . |+.+. . ..+|++
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 56788999999875 77788888875 567888886 66666665411111222 1 11111 1 248888
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+-.-- . ...++.+.+.|+| +|+++++-.
T Consensus 245 id~~g-----~---~~~~~~~~~~l~~---~G~iv~~G~ 272 (352)
T 1e3j_A 245 IDCSG-----N---EKCITIGINITRT---GGTLMLVGM 272 (352)
T ss_dssp EECSC-----C---HHHHHHHHHHSCT---TCEEEECSC
T ss_pred EECCC-----C---HHHHHHHHHHHhc---CCEEEEEec
Confidence 76432 1 2357788889999 899988754
No 500
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=77.88 E-value=3.3 Score=37.72 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=59.0
Q ss_pred CCCeEEEec--CCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeC--CCCC---CC--CCceEEEeccccc
Q 017835 200 GLNTLVDVG--GGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGG--NMFE---AI--PPADAVLIKCVLH 269 (365)
Q Consensus 200 ~~~~iLDiG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~--d~~~---~~--~~~D~i~~~~vlh 269 (365)
++.+||=+| ||.|.++..+++...+.++++++. +.-.+.+++..--.++.. |+.+ .. ..+|+++-+-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~--- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTT--- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECS---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECC---
Confidence 677899988 556888888998756789999998 666666665221111211 1111 11 2488887632
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.. ...++.+.+.|+| +|+++++.
T Consensus 248 --g~---~~~~~~~~~~l~~---~G~iv~~g 270 (363)
T 4dvj_A 248 --HT---DKHAAEIADLIAP---QGRFCLID 270 (363)
T ss_dssp --CH---HHHHHHHHHHSCT---TCEEEECS
T ss_pred --Cc---hhhHHHHHHHhcC---CCEEEEEC
Confidence 21 3467888899999 89999873
Done!