BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017838
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 169/331 (51%), Gaps = 17/331 (5%)
Query: 23 VKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKI----NIPIIDFEGIHKD-ASLRS 77
V+ L SGI +IP+ +I+ + +D +F + K +P ID + I D +R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESIND--VFLEEKKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 78 QAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIR- 136
+++++ A WG INHGIP ++++ FF VE K+KY + + KI+
Sbjct: 65 NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 137 YCSNINLFSAPILYWKDTLSFDLG-----RDFSSPEELPEACRDIMITYNNQMWKTGEIL 191
Y S + ++ L W+D F L RD S + P + Y + +
Sbjct: 125 YGSKLANNASGQLEWEDYF-FHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 192 CELLSEALGLSPNYL-KDIGCVEEMTIGN--NYYPECPQPELTIGVTTHSDPGFVTVLIQ 248
+ LS LGL P+ L K++G +EE+ + NYYP+CPQPEL +GV H+D +T ++
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 249 DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGS 308
+ + GLQ+F E +W VP ++V+++G +++++N K+KS HR L KE RIS
Sbjct: 244 NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 303
Query: 309 FFMNNSCSRRYGPIKDLLSDENPPLYPEITL 339
F P+ +++S E+P +P T
Sbjct: 304 FCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 334
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 169/331 (51%), Gaps = 17/331 (5%)
Query: 23 VKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKI----NIPIIDFEGIHKD-ASLRS 77
V+ L SGI +IP+ +I+ + +D +F + K +P ID + I D +R
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESIND--VFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63
Query: 78 QAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIR- 136
+++++ A WG INHGIP ++++ FF VE K+KY + + KI+
Sbjct: 64 NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123
Query: 137 YCSNINLFSAPILYWKDTLSFDLG-----RDFSSPEELPEACRDIMITYNNQMWKTGEIL 191
Y S + ++ L W+D F L RD S + P + Y + +
Sbjct: 124 YGSKLANNASGQLEWEDYF-FHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182
Query: 192 CELLSEALGLSPNYL-KDIGCVEEMTIGN--NYYPECPQPELTIGVTTHSDPGFVTVLIQ 248
+ LS LGL P+ L K++G +EE+ + NYYP+CPQPEL +GV H+D +T ++
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 242
Query: 249 DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGS 308
+ + GLQ+F E +W VP ++V+++G +++++N K+KS HR L KE RIS
Sbjct: 243 NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 302
Query: 309 FFMNNSCSRRYGPIKDLLSDENPPLYPEITL 339
F P+ +++S E+P +P T
Sbjct: 303 FCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 333
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 166/331 (50%), Gaps = 17/331 (5%)
Query: 23 VKGLVDSGITTIPRIFIQDQHTKHKFDDKPIFRDPKI----NIPIIDFEGIHKD-ASLRS 77
V+ L SGI +IP+ +I+ + +D +F + K +P ID + I D +R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESIND--VFLEEKKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 78 QAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIR- 136
+++++ A WG INHGIP + ++ FF VE K+KY + + KI+
Sbjct: 65 NCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 137 YCSNINLFSAPILYWKDTLSFDLG-----RDFSSPEELPEACRDIMITYNNQMWKTGEIL 191
Y S + ++ L W+D F L RD S + P + Y + +
Sbjct: 125 YGSKLANNASGQLEWEDYF-FHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 192 CELLSEALGLSPNYL-KDIGCVEEMTIGN--NYYPECPQPELTIGVTTHSDPGFVTVLIQ 248
+ LS LGL P+ L K++G +EE+ + NYYP+CPQPEL +GV H+D +T ++
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 249 DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKEGSRISIGS 308
+ + GLQ+F E +W VP ++V ++G +++++N K+KS HR L KE RIS
Sbjct: 244 NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 303
Query: 309 FFMNNSCSRRYGPIKDLLSDENPPLYPEITL 339
F P+ + +S E+P +P T
Sbjct: 304 FCEPPKDKIVLKPLPEXVSVESPAKFPPRTF 334
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 153/297 (51%), Gaps = 30/297 (10%)
Query: 60 NIPIIDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKD 119
N PII + + + R+ + I+ ACE WGFF+ +NHGIP V D + ++K
Sbjct: 3 NFPIISLDKV--NGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKC 60
Query: 120 VEVKKKYFSRDYSKKIRYCSNINLFSAPIL--YWKDTLSFDLGRDFSSPEELP---EACR 174
E + K++ + A + W+ T F S+ E+P E R
Sbjct: 61 XEQR--------FKELVASKALEGVQAEVTDXDWESTF-FLKHLPISNISEVPDLDEEYR 111
Query: 175 DIMITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNY------YPECPQP 228
++ + ++ K E L +LL E LGL YLK+ + G N+ YP CP+P
Sbjct: 112 EVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFY---GSKGPNFGTKVSNYPPCPKP 168
Query: 229 ELTIGVTTHSDPGFVTVLIQ-DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDK 287
+L G+ H+D G + +L Q D++ GLQ+ + QW D+ P ++VVNLG +++ITN K
Sbjct: 169 DLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGK 228
Query: 288 FKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKDLL---SDENPPLYPEITLKD 341
+KS HRV+++K+G+R S+ SF+ S + Y P L+ ++EN +YP+ D
Sbjct: 229 YKSVXHRVIAQKDGARXSLASFYNPGSDAVIY-PAPALVEKEAEENKQVYPKFVFDD 284
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 32/300 (10%)
Query: 82 QIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYF-----SRDY----S 132
++ ++ E++GF ++ + + +D A+D + FF VE KK+Y +R Y
Sbjct: 25 ELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGV 84
Query: 133 KKIRYCSNINLFSAPILYWKDTLSFDLGRDFSS-------PEELPEACRDIMITYNNQMW 185
+ + + +L +W G F + P E+P D+ YN+
Sbjct: 85 ETAKGADHYDLKE----FWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDG 140
Query: 186 KTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVTTHSDPGFVTV 245
G++L E ++ L L ++ K + +YP P+ + H D +T+
Sbjct: 141 XGGKVL-EAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITL 199
Query: 246 LIQDRIGGLQVFCED-QWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLS---KKEG 301
L+ GGL+V D QW I P PG LV+N+G ++ +TN+ S HRV++ ++ G
Sbjct: 200 LLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRG 259
Query: 302 SRISIGSFFMNNSCSRRYGPIKDLLSDENPPLYPEITLKDIYNNQSSTEGLSALEKLKLA 361
FF++ + +++ ++ ENP YPE D + Q L ++KLA
Sbjct: 260 VPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQR-------LREIKLA 312
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 35/270 (12%)
Query: 58 KINIPIIDFEGIH-KDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFF 116
K N+P ID + D + + + QI +A GFF A+NHGI L Q
Sbjct: 6 KANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSI 65
Query: 117 --EKDVEVKKKYFSRDYSKKIRYCSNINLFSAPIL----YWKDTLSFDLGRDFSS----- 165
E+ ++ + +++++ ++R +++ + Y + D R +
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 166 ----PEELPE-ACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLK-----DIGCVEEM 215
P+E +D Y ++ L + + ALG N+ D +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 216 TIGNNYYPEC-PQPELTIGVTT---------HSDPGFVTVLIQDRIGGLQVFCEDQWFDI 265
I YP P PE I H D +TVL Q + LQV + DI
Sbjct: 186 LIR---YPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDI 242
Query: 266 TPVPGALVVNLGYMMQLITNDKFKSAYHRV 295
++N G M +TN+ +K+ HRV
Sbjct: 243 EADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 35/270 (12%)
Query: 58 KINIPIIDFEGIH-KDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFF 116
K N+P ID + D + + + QI +A GFF A+NHGI L Q
Sbjct: 6 KANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSI 65
Query: 117 --EKDVEVKKKYFSRDYSKKIRYCSNINLFSAPIL----YWKDTLSFDLGRDFSS----- 165
E+ ++ + +++++ ++R +++ + Y + D R +
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 166 ----PEELPE-ACRDIMITYNNQMWKTGEILCELLSEALGLSPNYLK-----DIGCVEEM 215
P+E +D Y ++ L + + ALG N+ D +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 216 TIGNNYYPEC-PQPELTIGVTT---------HSDPGFVTVLIQDRIGGLQVFCEDQWFDI 265
I YP P PE I H D +TVL Q + LQV + DI
Sbjct: 186 LIR---YPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDI 242
Query: 266 TPVPGALVVNLGYMMQLITNDKFKSAYHRV 295
++N G M +TN+ +K+ HRV
Sbjct: 243 EADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 231 TIGVTTHSDPGFVTVLIQDRIGGLQVFCED-QWFDITPVPGALVVNLGYMMQLITNDKFK 289
I H D +TVL GLQV +D W D+ G +++N+G +Q ++ F
Sbjct: 168 AIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFP 227
Query: 290 SAYHRVL----SKKEGSRISIGSFFMNNSC---SRRY 319
S HRV+ + K SRIS+ F + S RY
Sbjct: 228 STSHRVINPEGTDKTKSRISLPLFLHPHPSVVLSERY 264
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 101/269 (37%), Gaps = 40/269 (14%)
Query: 67 EGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKY 126
+G+H+D + R G F + G+ + L A D + FFE E +K+
Sbjct: 15 QGLHQD---------EFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRA 65
Query: 127 FSRDYSKKIRYCSNINLFSAPIL-----YWKDTLSFDLGRDFSSPEELPEA-CRDIMITY 180
+ R + + S + Y ++ + +G ++ P I Y
Sbjct: 66 VTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMG---TADNLFPSGDFERIWTQY 122
Query: 181 NNQMWKTGEILCELLSEALGLSPNYLKDIGCVE-----EMTIGNNYYPECPQ----PELT 231
++ + + + A G P+ G VE E + Y+P+ P+ E
Sbjct: 123 FDRQYTASRAVAREVLRATGTEPD-----GGVEAFLDCEPLLRFRYFPQVPEHRSAEEQP 177
Query: 232 IGVTTHSDPGFVTVLIQ----DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDK 287
+ + H D VT++ Q + LQ + D+ P A++V G + L+T +
Sbjct: 178 LRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQ 237
Query: 288 FKSAYHRVLSKKE----GSRISIGSFFMN 312
K+ H V + + GS + FF+
Sbjct: 238 VKAPRHHVAAPRRDQIAGSSRTSSVFFLR 266
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 101/269 (37%), Gaps = 40/269 (14%)
Query: 67 EGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKY 126
+G+H+D + R G F + G+ + L A D + FFE E +K+
Sbjct: 15 QGLHQD---------EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
Query: 127 FSRDYSKKIRYCSNINLFSAPIL-----YWKDTLSFDLGRDFSSPEELPEA-CRDIMITY 180
+ R + + S + Y ++ + +G ++ P I Y
Sbjct: 66 VTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMG---TADNLFPSGDFERIWTQY 122
Query: 181 NNQMWKTGEILCELLSEALGLSPNYLKDIGCVE-----EMTIGNNYYPECPQ----PELT 231
++ + + + A G P+ G VE E + Y+P+ P+ E
Sbjct: 123 FDRQYTASRAVAREVLRATGTEPD-----GGVEAFLDCEPLLRFRYFPQVPEHRSAEEQP 177
Query: 232 IGVTTHSDPGFVTVLIQ----DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDK 287
+ + H D VT++ Q + LQ + D+ P A++V G + L+T +
Sbjct: 178 LRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQ 237
Query: 288 FKSAYHRVLSKKE----GSRISIGSFFMN 312
K+ H V + + GS + FF+
Sbjct: 238 VKAPRHHVAAPRRDQIAGSSRTSSVFFLR 266
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 101/268 (37%), Gaps = 40/268 (14%)
Query: 67 EGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKY 126
+G+H+D + R G F + G+ + L A D + FFE E +K+
Sbjct: 15 QGLHQD---------EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
Query: 127 FSRDYSKKIRYCSNINLFSAPIL-----YWKDTLSFDLGRDFSSPEELPEA-CRDIMITY 180
+ R + + S + Y ++ + +G ++ P I Y
Sbjct: 66 VTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMG---TADNLFPSGDFERIWTQY 122
Query: 181 NNQMWKTGEILCELLSEALGLSPNYLKDIGCVE-----EMTIGNNYYPECPQ----PELT 231
++ + + + A G P+ G VE E + Y+P+ P+ E
Sbjct: 123 FDRQYTASRAVAREVLRATGTEPD-----GGVEAFLDCEPLLRFRYFPQVPEHRSAEEQP 177
Query: 232 IGVTTHSDPGFVTVLIQ----DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDK 287
+ + H D VT++ Q + LQ + D+ P A++V G + L+T +
Sbjct: 178 LRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQ 237
Query: 288 FKSAYHRVLSKKE----GSRISIGSFFM 311
K+ H V + + GS + FF+
Sbjct: 238 VKAPRHHVAAPRRDQIAGSSRTSSVFFL 265
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 96/255 (37%), Gaps = 31/255 (12%)
Query: 81 DQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSRDYSKKIRYCSN 140
D+ R G F + G+ + L A D + FFE E +K+ + R +
Sbjct: 40 DEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTG 99
Query: 141 INLFSAPIL-----YWKDTLSFDLGRDFSSPEELPEA-CRDIMITYNNQMWKTGEILCEL 194
+ S + Y ++ + +G ++ P I Y ++ + +
Sbjct: 100 LESESTAQITNTGSYSDYSMCYSMG---TADNLFPSGDFERIWTQYFDRQYTASRAVARE 156
Query: 195 LSEALGLSPNYLKDIGCVE-----EMTIGNNYYPECPQ----PELTIGVTTHSDPGFVTV 245
+ A G P+ G VE E + Y+P+ P+ E + + H D VT+
Sbjct: 157 VLRATGTEPD-----GGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTL 211
Query: 246 LIQ----DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDKFKSAYHRVLSKKE- 300
+ Q + LQ + D+ P A++V G + L+T + K+ H V + +
Sbjct: 212 IQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRD 271
Query: 301 ---GSRISIGSFFMN 312
GS + FF+
Sbjct: 272 QIAGSSRTSSVFFLR 286
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 101/268 (37%), Gaps = 40/268 (14%)
Query: 67 EGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKY 126
+G+H+D + R G F + G+ + L A D + FFE E +K+
Sbjct: 15 QGLHQD---------EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
Query: 127 FSRDYSKKIRYCSNINLFSAPIL-----YWKDTLSFDLGRDFSSPEELPEA-CRDIMITY 180
+ R + + S + Y ++ + +G ++ P I Y
Sbjct: 66 VTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMG---TADNLFPSGDFERIWTQY 122
Query: 181 NNQMWKTGEILCELLSEALGLSPNYLKDIGCVE-----EMTIGNNYYPECPQ----PELT 231
++ + + + A G P+ G VE E + Y+P+ P+ E
Sbjct: 123 FDRQYTASRAVAREVLRATGTEPD-----GGVEAFLDCEPLLRFRYFPQVPEHRSAEEQP 177
Query: 232 IGVTTHSDPGFVTVLIQ----DRIGGLQVFCEDQWFDITPVPGALVVNLGYMMQLITNDK 287
+ + H D VT++ Q + LQ + D+ P A++V G + L+T +
Sbjct: 178 LRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQ 237
Query: 288 FKSAYHRVLSKKE----GSRISIGSFFM 311
K+ H V + + GS + FF+
Sbjct: 238 VKAPRHHVAAPRRDQIAGSSQTSSVFFL 265
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 5 PSSDRMSELKAFDETKAGVKGLVDSGITTIPRIFIQDQHTKHK-FDDKPIFRDPKINIPI 63
P++ R++ +A +E L+ G+ + R+ +++ + K FD ++ +
Sbjct: 148 PANARIT--RAIEER---ANALLQEGLKGVKRLPLREALARAKPFDYAGLYVEKVAEA-- 200
Query: 64 IDFEGIHKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVK 123
+D E I + + LR VD + A + A +HG+P V++ +D RF K
Sbjct: 201 VDLEAI-RASGLRI-GVDPLGGASLRVWERLAESHGLPLEVVNPTLDPTFRFMPK----- 253
Query: 124 KKYFSRDYSKKIRYCSNINLFSAPILYWKDTLSFDLGRDFSSPEELPEACRDIMITYNNQ 183
D+ KIR + A +L KD +G D P+A R ++T
Sbjct: 254 ------DHDGKIRMDCSSPYAMAGLLALKDRFDLAIGND-------PDADRHGIVTPRGL 300
Query: 184 M 184
M
Sbjct: 301 M 301
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 70 HKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSR 129
++ + ++ ++ + + CEK G F I + S + AID R+F + +E KK Y+ R
Sbjct: 83 YRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISN-ESAIDFYRKFGFEIIETKKNYYKR 141
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 70 HKDASLRSQAVDQIRSACEKWGFFQAINHGIPTSVLDQAIDGIRRFFEKDVEVKKKYFSR 129
++ + ++ ++ + + CEK G F I + S + AID R+F + +E KK Y+ R
Sbjct: 84 YRRLGIGTKXLNHVLNICEKDGTFDNIYLHVQISN-ESAIDFYRKFGFEIIETKKNYYKR 142
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 17 DETKAGVKGL---VDSGITTIPRIFIQDQHTKHKFDD 50
+ET GVK L + G TIP + + D TK KFD+
Sbjct: 153 EETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDN 189
>pdb|2XWX|A Chain A, Vibrio Cholerae Colonization Factor Gbpa Crystal Structure
pdb|2XWX|B Chain B, Vibrio Cholerae Colonization Factor Gbpa Crystal Structure
Length = 391
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 178 ITYNNQMWKTGEILCELLSEALGLSPNYLKDIGCVEEMTIGNNYYPECPQPELTIGVT 235
I + + G++ + G +P YLK+ ++ + IG Y E PQPE ++ V+
Sbjct: 245 INQTQKQQRAGQLNGDQFVPVYGTNPIYLKEGSGLKSVEIG--YQIEAPQPEYSLTVS 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,377,902
Number of Sequences: 62578
Number of extensions: 488846
Number of successful extensions: 1042
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 32
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)