BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017839
         (365 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q87TT8|GLMS_PSESM Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
           OS=Pseudomonas syringae pv. tomato (strain DC3000)
           GN=glmS PE=3 SV=2
          Length = 611

 Score = 36.2 bits (82), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 314 RGGGKASDLENVYG--PLIGKLGYKKVKWATANKPNSKNGEVYLTA 357
           R  GK S+LE      PLIG+LG    +WAT   P  +N   + +A
Sbjct: 47  RRSGKVSELEQALAGEPLIGRLGIAHTRWATHGAPCERNAHPHFSA 92


>sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana
           GN=At2g45750 PE=3 SV=1
          Length = 631

 Score = 35.0 bits (79), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 13/115 (11%)

Query: 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLV 267
           + + +DL+  +   IR  ID G    SF A +   NIT ++             AL   V
Sbjct: 198 IGRLIDLSDGS---IRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQVQFALERGV 254

Query: 268 PLHVPLQQ--RLPLFDGVLDVVRCGHAVNRW---IPVIMMEFLFYDVDRVLRGGG 317
           P  + +    RLP      D+  C   +  W       +ME     VDRVLR GG
Sbjct: 255 PAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLME-----VDRVLRPGG 304


>sp|Q43153|CYSC_SPIOL Bifunctional L-3-cyanoalanine synthase/cysteine synthase,
           mitochondrial OS=Spinacia oleracea GN=CYSC PE=1 SV=1
          Length = 368

 Score = 34.7 bits (78), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%)

Query: 138 RCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKS-FSCLVQKSPNLGFDPASEKSSS 196
           RCFS T S   +   S+PFP         ++  N K+  S L+ ++P +     SE S +
Sbjct: 24  RCFSTTSSSAQTVSGSSPFP---------FTGTNIKTNVSQLIGRTPLVYLSKISEGSGA 74

Query: 197 FLAFKSELDLPVTQFLD 213
           ++A K E+  P     D
Sbjct: 75  YIAVKQEMMQPTASVKD 91


>sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana
           GN=At2g43200 PE=3 SV=1
          Length = 611

 Score = 33.9 bits (76), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 4/112 (3%)

Query: 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALRGL 266
           V   L +   A+  IR  +D+G    SF A +  Y I T+     ++     + A  RGL
Sbjct: 200 VDVILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGL 259

Query: 267 -VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317
              L V    +LP      D+V C   +  W     +  +  +VDRVLR  G
Sbjct: 260 PAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLM--EVDRVLRPEG 309


>sp|Q9PQS1|FTHS_UREPA Formate--tetrahydrofolate ligase OS=Ureaplasma parvum serovar 3
           (strain ATCC 700970) GN=fhs PE=3 SV=1
          Length = 521

 Score = 31.6 bits (70), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 1   MGFSMGLNLVLLLAMVATN-----ILSLYHLSSTTYQSQTKPPTQQQVPDYLIHQLQTIR 55
            G  +GL   + + M + N     I  +  L S  Y +QT         DY+      + 
Sbjct: 283 FGSDLGLEKFMNIKMASLNLKPDLIGLVISLKSIAYHAQTNEK------DYVKQGFANVL 336

Query: 56  ATINHLTRHHPSTTIDTNSKTTTTIPQDLLLYSRL 90
             INH+ +++ S  +  N  T T   +DLL   +L
Sbjct: 337 CHINHIKKYNVSFIVYINVNTNTDSEEDLLTLEKL 371


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,240,089
Number of Sequences: 539616
Number of extensions: 5739945
Number of successful extensions: 15637
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 15601
Number of HSP's gapped (non-prelim): 33
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)