Query 017839
Match_columns 365
No_of_seqs 285 out of 1469
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1.8E-44 3.8E-49 367.1 12.8 215 126-364 23-263 (506)
2 COG2226 UbiE Methylase involve 99.8 1.2E-18 2.7E-23 165.3 12.2 89 224-317 54-150 (238)
3 PF03141 Methyltransf_29: Puta 99.8 7.2E-19 1.6E-23 180.2 10.0 223 90-344 259-493 (506)
4 PF01209 Ubie_methyltran: ubiE 99.7 1.5E-17 3.1E-22 157.1 6.8 89 224-317 50-147 (233)
5 PF08241 Methyltransf_11: Meth 99.7 4.8E-17 1E-21 127.3 8.4 87 226-317 1-91 (95)
6 PLN02233 ubiquinone biosynthes 99.6 9.1E-15 2E-19 139.6 11.3 89 224-317 76-176 (261)
7 PLN02244 tocopherol O-methyltr 99.6 3.6E-14 7.7E-19 140.4 13.4 89 224-317 121-217 (340)
8 KOG1540 Ubiquinone biosynthesi 99.6 1.7E-14 3.7E-19 137.9 10.4 90 222-317 102-208 (296)
9 PRK05785 hypothetical protein; 99.5 2.6E-14 5.6E-19 133.9 9.2 87 224-317 54-141 (226)
10 PLN02490 MPBQ/MSBQ methyltrans 99.5 6.3E-13 1.4E-17 132.3 15.6 136 224-364 116-283 (340)
11 PRK10258 biotin biosynthesis p 99.5 2.1E-13 4.6E-18 127.8 11.0 89 224-317 45-134 (251)
12 PTZ00098 phosphoethanolamine N 99.5 4.4E-13 9.4E-18 128.2 13.2 115 224-341 55-201 (263)
13 PRK11036 putative S-adenosyl-L 99.4 5.2E-13 1.1E-17 126.2 11.5 89 224-317 47-143 (255)
14 PLN02396 hexaprenyldihydroxybe 99.4 1.3E-13 2.8E-18 136.2 7.6 89 224-317 134-229 (322)
15 PF13649 Methyltransf_25: Meth 99.4 9.1E-14 2E-18 113.1 5.1 90 225-317 1-101 (101)
16 PRK14103 trans-aconitate 2-met 99.4 4.1E-13 9E-18 126.7 10.3 87 224-317 32-120 (255)
17 PRK15068 tRNA mo(5)U34 methylt 99.4 1.3E-12 2.8E-17 128.8 11.5 116 224-345 125-277 (322)
18 PF13489 Methyltransf_23: Meth 99.4 6.1E-13 1.3E-17 114.1 8.1 85 224-317 25-109 (161)
19 TIGR02752 MenG_heptapren 2-hep 99.4 2.5E-12 5.5E-17 118.6 12.5 89 224-317 48-145 (231)
20 PLN02336 phosphoethanolamine N 99.4 2.8E-12 6.1E-17 131.1 12.9 112 224-340 269-412 (475)
21 TIGR00452 methyltransferase, p 99.4 4E-12 8.8E-17 125.3 13.4 119 223-347 123-278 (314)
22 PRK11207 tellurite resistance 99.3 7.9E-12 1.7E-16 114.4 10.8 89 225-317 34-128 (197)
23 TIGR02081 metW methionine bios 99.3 1.9E-11 4E-16 111.0 12.8 125 224-354 16-179 (194)
24 PRK11873 arsM arsenite S-adeno 99.3 1E-11 2.2E-16 118.0 11.5 114 224-342 80-230 (272)
25 PRK08317 hypothetical protein; 99.3 3.9E-11 8.6E-16 108.9 13.5 89 224-317 22-118 (241)
26 COG2227 UbiG 2-polyprenyl-3-me 99.3 3.6E-12 7.8E-17 121.1 6.6 90 222-317 61-155 (243)
27 PRK15451 tRNA cmo(5)U34 methyl 99.3 1.6E-11 3.5E-16 116.0 9.5 88 225-317 60-158 (247)
28 TIGR02072 BioC biotin biosynth 99.2 1.8E-11 3.8E-16 111.6 8.5 89 224-317 37-129 (240)
29 PF12847 Methyltransf_18: Meth 99.2 1.6E-11 3.5E-16 100.1 7.0 90 225-317 5-105 (112)
30 PRK11088 rrmA 23S rRNA methylt 99.2 2.4E-11 5.3E-16 116.1 9.3 82 224-317 88-175 (272)
31 smart00828 PKS_MT Methyltransf 99.2 5E-11 1.1E-15 109.5 11.0 111 225-341 3-143 (224)
32 TIGR03587 Pse_Me-ase pseudamin 99.2 4.5E-11 9.9E-16 110.6 10.6 87 224-314 46-135 (204)
33 TIGR00477 tehB tellurite resis 99.2 2.7E-11 5.8E-16 110.7 8.9 89 225-317 34-127 (195)
34 PRK12335 tellurite resistance 99.2 5.5E-11 1.2E-15 114.8 11.4 89 225-317 124-217 (287)
35 TIGR00740 methyltransferase, p 99.2 4E-11 8.8E-16 112.0 10.1 89 224-317 56-155 (239)
36 PLN02336 phosphoethanolamine N 99.2 4.1E-11 8.8E-16 122.6 10.9 115 224-341 40-181 (475)
37 PRK01683 trans-aconitate 2-met 99.2 5.6E-11 1.2E-15 111.8 10.4 88 224-317 34-124 (258)
38 smart00138 MeTrc Methyltransfe 99.2 3.7E-11 8E-16 115.3 8.9 93 221-317 100-236 (264)
39 PF13847 Methyltransf_31: Meth 99.2 3.6E-11 7.8E-16 104.7 7.0 89 222-317 5-104 (152)
40 PRK00216 ubiE ubiquinone/menaq 99.2 3.9E-10 8.4E-15 103.1 13.7 89 224-317 54-152 (239)
41 PF08003 Methyltransf_9: Prote 99.2 2.7E-10 5.8E-15 111.9 12.9 120 223-347 117-272 (315)
42 PF02353 CMAS: Mycolic acid cy 99.2 1.3E-10 2.7E-15 112.5 10.6 90 220-317 63-160 (273)
43 PF08242 Methyltransf_12: Meth 99.1 1.5E-11 3.2E-16 99.2 2.2 87 226-317 1-97 (99)
44 PRK11188 rrmJ 23S rRNA methylt 99.1 4.7E-10 1E-14 104.1 12.4 122 224-358 54-205 (209)
45 PF07021 MetW: Methionine bios 99.1 1.3E-10 2.9E-15 107.4 8.6 87 222-315 15-104 (193)
46 PRK06202 hypothetical protein; 99.1 1.4E-10 3.1E-15 107.9 8.9 88 224-314 63-159 (232)
47 PRK06922 hypothetical protein; 99.1 1.1E-10 2.4E-15 124.3 9.0 92 224-317 421-531 (677)
48 TIGR02716 C20_methyl_CrtF C-20 99.1 5.3E-10 1.1E-14 108.4 12.4 89 223-317 151-248 (306)
49 TIGR02021 BchM-ChlM magnesium 99.1 2.9E-10 6.4E-15 104.7 9.9 88 224-317 58-152 (219)
50 KOG3010 Methyltransferase [Gen 99.1 1.3E-10 2.9E-15 110.6 7.2 90 222-317 34-130 (261)
51 KOG1541 Predicted protein carb 99.1 5.1E-10 1.1E-14 105.7 10.7 122 222-346 51-194 (270)
52 PRK00121 trmB tRNA (guanine-N( 99.1 1.8E-10 3.8E-15 106.0 7.3 111 223-336 42-175 (202)
53 PF05401 NodS: Nodulation prot 99.1 1.2E-09 2.7E-14 101.4 12.5 138 220-364 42-199 (201)
54 KOG4300 Predicted methyltransf 99.1 1.9E-10 4.2E-15 107.6 6.7 88 225-317 80-176 (252)
55 PRK07580 Mg-protoporphyrin IX 99.0 1.3E-09 2.9E-14 100.0 11.0 88 224-317 66-160 (230)
56 TIGR00537 hemK_rel_arch HemK-r 99.0 2.5E-09 5.4E-14 95.8 12.4 110 225-338 23-161 (179)
57 PRK11705 cyclopropane fatty ac 99.0 7.3E-10 1.6E-14 111.8 9.6 88 224-317 170-261 (383)
58 PLN02232 ubiquinone biosynthes 99.0 5.3E-10 1.2E-14 99.3 6.7 65 250-317 2-75 (160)
59 PRK00517 prmA ribosomal protei 99.0 3.3E-09 7.1E-14 100.6 11.9 118 224-362 122-250 (250)
60 TIGR00138 gidB 16S rRNA methyl 99.0 1.5E-09 3.2E-14 98.8 9.1 105 224-338 45-165 (181)
61 TIGR00091 tRNA (guanine-N(7)-) 99.0 7E-10 1.5E-14 101.2 6.8 91 224-317 19-126 (194)
62 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1.3E-09 2.9E-14 98.6 8.6 89 224-317 42-137 (223)
63 TIGR03840 TMPT_Se_Te thiopurin 99.0 2.3E-09 5E-14 100.1 10.2 90 225-317 38-146 (213)
64 PRK00107 gidB 16S rRNA methylt 99.0 8.2E-09 1.8E-13 94.8 12.9 108 224-341 48-168 (187)
65 PRK04266 fibrillarin; Provisio 99.0 6.5E-09 1.4E-13 98.1 12.4 113 224-344 75-212 (226)
66 TIGR00438 rrmJ cell division p 99.0 6.9E-09 1.5E-13 93.8 11.5 87 224-317 35-140 (188)
67 PRK14968 putative methyltransf 98.9 2.1E-08 4.5E-13 88.8 14.1 111 224-338 26-169 (188)
68 TIGR03534 RF_mod_PrmC protein- 98.9 6.6E-09 1.4E-13 96.4 11.3 130 204-339 73-238 (251)
69 COG2230 Cfa Cyclopropane fatty 98.9 2.3E-09 5E-14 104.5 8.5 91 224-317 75-170 (283)
70 TIGR01177 conserved hypothetic 98.9 9.5E-09 2.1E-13 101.2 12.2 111 224-338 185-311 (329)
71 PLN02585 magnesium protoporphy 98.9 5.7E-09 1.2E-13 103.1 10.1 124 224-360 147-311 (315)
72 PRK08287 cobalt-precorrin-6Y C 98.9 6.8E-09 1.5E-13 93.6 9.8 108 224-341 34-155 (187)
73 KOG1270 Methyltransferases [Co 98.9 2.3E-09 5E-14 103.3 6.1 87 223-317 91-189 (282)
74 PRK14121 tRNA (guanine-N(7)-)- 98.9 6.8E-09 1.5E-13 105.3 9.2 91 224-317 125-229 (390)
75 PRK13255 thiopurine S-methyltr 98.9 1.1E-08 2.4E-13 95.9 9.4 90 225-317 41-149 (218)
76 PRK00377 cbiT cobalt-precorrin 98.8 3.2E-08 6.9E-13 90.4 12.0 129 224-362 43-198 (198)
77 PRK13944 protein-L-isoaspartat 98.8 1.3E-08 2.8E-13 93.8 9.1 83 224-317 75-167 (205)
78 TIGR01983 UbiG ubiquinone bios 98.8 1.2E-08 2.5E-13 93.5 8.7 89 224-317 48-143 (224)
79 PF03848 TehB: Tellurite resis 98.8 8.3E-09 1.8E-13 95.6 7.1 89 225-317 34-127 (192)
80 TIGR02469 CbiT precorrin-6Y C5 98.8 1.7E-08 3.7E-13 83.0 7.9 86 224-317 22-116 (124)
81 PF05148 Methyltransf_8: Hypot 98.8 2E-08 4.4E-13 94.2 9.2 101 224-341 75-184 (219)
82 PRK09489 rsmC 16S ribosomal RN 98.8 5.1E-08 1.1E-12 97.3 12.1 129 225-364 200-341 (342)
83 PRK05134 bifunctional 3-demeth 98.8 2.3E-08 5.1E-13 92.5 8.6 88 225-317 52-145 (233)
84 PRK09328 N5-glutamine S-adenos 98.8 1.2E-07 2.6E-12 89.7 13.2 137 199-340 88-260 (275)
85 PRK14967 putative methyltransf 98.8 1.6E-07 3.4E-12 87.3 13.6 111 224-338 39-180 (223)
86 TIGR00406 prmA ribosomal prote 98.7 6.2E-08 1.3E-12 93.9 11.0 84 224-317 162-253 (288)
87 COG4106 Tam Trans-aconitate me 98.7 3.1E-08 6.8E-13 93.5 7.9 100 210-317 21-123 (257)
88 TIGR03438 probable methyltrans 98.7 9.7E-08 2.1E-12 93.1 11.6 91 224-317 66-171 (301)
89 PRK13942 protein-L-isoaspartat 98.7 7.7E-08 1.7E-12 89.3 9.3 83 224-317 79-170 (212)
90 TIGR00080 pimt protein-L-isoas 98.7 6.8E-08 1.5E-12 89.3 8.6 83 224-317 80-171 (215)
91 PF13659 Methyltransf_26: Meth 98.7 2.7E-08 6E-13 81.8 5.1 91 225-317 4-109 (117)
92 PTZ00146 fibrillarin; Provisio 98.7 3.9E-07 8.4E-12 89.5 13.6 129 224-361 135-288 (293)
93 TIGR03533 L3_gln_methyl protei 98.7 3E-07 6.5E-12 89.3 12.6 111 224-338 124-270 (284)
94 PRK14966 unknown domain/N5-glu 98.6 3E-07 6.5E-12 94.2 13.0 153 200-362 234-421 (423)
95 KOG2361 Predicted methyltransf 98.6 1.6E-07 3.5E-12 89.7 10.3 136 225-363 75-264 (264)
96 COG4976 Predicted methyltransf 98.6 2E-08 4.4E-13 95.5 4.0 128 207-341 113-264 (287)
97 KOG2940 Predicted methyltransf 98.6 4.2E-08 9.1E-13 93.5 6.2 102 208-317 63-168 (325)
98 TIGR00536 hemK_fam HemK family 98.6 2.6E-07 5.7E-12 89.3 11.9 134 200-339 94-266 (284)
99 cd02440 AdoMet_MTases S-adenos 98.6 1.7E-07 3.6E-12 71.8 8.3 89 225-317 2-98 (107)
100 PRK15001 SAM-dependent 23S rib 98.6 1.7E-07 3.6E-12 94.9 10.3 90 225-317 232-334 (378)
101 COG2264 PrmA Ribosomal protein 98.6 2.8E-07 6E-12 90.7 10.7 110 223-340 164-286 (300)
102 PLN03075 nicotianamine synthas 98.6 1.7E-07 3.7E-12 92.1 9.2 91 223-317 125-227 (296)
103 PF05219 DREV: DREV methyltran 98.6 4.7E-07 1E-11 87.4 11.5 116 223-347 96-245 (265)
104 KOG3045 Predicted RNA methylas 98.6 3.9E-07 8.5E-12 88.1 10.5 105 220-344 180-293 (325)
105 PRK10901 16S rRNA methyltransf 98.6 8.9E-07 1.9E-11 90.4 13.6 134 224-361 247-426 (427)
106 PRK14901 16S rRNA methyltransf 98.5 9.7E-07 2.1E-11 90.3 12.6 135 224-362 255-433 (434)
107 COG2521 Predicted archaeal met 98.5 4.2E-07 9E-12 86.9 8.4 111 224-339 137-274 (287)
108 TIGR03704 PrmC_rel_meth putati 98.5 1.7E-06 3.7E-11 82.6 12.5 133 200-336 66-234 (251)
109 PRK14904 16S rRNA methyltransf 98.5 1.8E-06 4E-11 88.6 13.3 110 224-336 253-400 (445)
110 PHA03411 putative methyltransf 98.5 8.8E-07 1.9E-11 86.4 10.2 109 225-336 68-208 (279)
111 PRK00312 pcm protein-L-isoaspa 98.5 8.2E-07 1.8E-11 81.6 9.4 82 225-317 82-169 (212)
112 PF00891 Methyltransf_2: O-met 98.5 2.7E-07 5.9E-12 86.2 6.1 89 222-317 101-193 (241)
113 PRK14902 16S rRNA methyltransf 98.4 2.6E-06 5.7E-11 87.3 12.9 113 224-339 253-405 (444)
114 PF05175 MTS: Methyltransferas 98.4 7.8E-07 1.7E-11 79.6 7.8 90 224-317 34-134 (170)
115 PRK07402 precorrin-6B methylas 98.4 2E-06 4.4E-11 78.2 10.5 85 224-317 43-136 (196)
116 COG4123 Predicted O-methyltran 98.4 3E-06 6.5E-11 81.5 11.7 134 224-359 47-212 (248)
117 COG0500 SmtA SAM-dependent met 98.4 1.7E-06 3.7E-11 67.0 8.3 87 225-317 52-149 (257)
118 TIGR00446 nop2p NOL1/NOP2/sun 98.4 4.4E-06 9.5E-11 80.1 12.8 107 224-332 74-217 (264)
119 TIGR00563 rsmB ribosomal RNA s 98.4 3.9E-06 8.4E-11 85.7 13.1 108 224-333 241-387 (426)
120 PF06325 PrmA: Ribosomal prote 98.4 1.6E-06 3.4E-11 85.3 9.3 105 224-340 164-281 (295)
121 PRK01544 bifunctional N5-gluta 98.4 2.4E-06 5.3E-11 89.4 11.0 112 224-338 141-289 (506)
122 PRK11805 N5-glutamine S-adenos 98.3 2.5E-06 5.5E-11 83.9 10.0 108 224-335 136-279 (307)
123 smart00650 rADc Ribosomal RNA 98.3 3E-06 6.6E-11 75.4 8.6 68 224-293 16-87 (169)
124 COG2890 HemK Methylase of poly 98.3 1.7E-05 3.8E-10 77.1 14.0 137 194-335 86-255 (280)
125 PRK13256 thiopurine S-methyltr 98.3 8.1E-06 1.7E-10 77.5 11.2 91 223-317 46-157 (226)
126 PRK13943 protein-L-isoaspartat 98.2 4.7E-06 1E-10 82.8 9.4 83 224-317 83-174 (322)
127 PF06080 DUF938: Protein of un 98.2 2.4E-05 5.3E-10 73.3 13.1 92 225-317 29-135 (204)
128 PF02390 Methyltransf_4: Putat 98.2 2.8E-06 6.1E-11 78.4 6.6 92 223-317 19-127 (195)
129 PRK14903 16S rRNA methyltransf 98.2 6.4E-06 1.4E-10 84.6 9.8 111 224-336 240-389 (431)
130 COG2242 CobL Precorrin-6B meth 98.2 2.9E-05 6.2E-10 71.9 12.9 114 224-347 37-168 (187)
131 PRK00811 spermidine synthase; 98.2 4.8E-06 1E-10 80.9 7.7 92 223-317 78-185 (283)
132 PRK13168 rumA 23S rRNA m(5)U19 98.1 3.3E-05 7.2E-10 79.3 13.7 127 224-361 300-442 (443)
133 KOG1331 Predicted methyltransf 98.1 1.1E-06 2.4E-11 85.7 2.6 90 224-317 48-137 (293)
134 KOG1271 Methyltransferases [Ge 98.1 6.4E-06 1.4E-10 76.4 7.2 146 191-339 36-202 (227)
135 PRK10611 chemotaxis methyltran 98.1 1.2E-05 2.5E-10 78.9 8.6 94 220-317 115-256 (287)
136 PRK14896 ksgA 16S ribosomal RN 98.1 1.2E-05 2.6E-10 76.8 8.3 67 223-293 31-101 (258)
137 COG2813 RsmC 16S RNA G1207 met 98.1 5.3E-05 1.1E-09 74.7 12.7 89 225-317 162-260 (300)
138 PF05891 Methyltransf_PK: AdoM 98.1 1.7E-05 3.7E-10 75.0 8.7 122 222-345 56-204 (218)
139 PRK01581 speE spermidine synth 98.0 2.4E-05 5.3E-10 79.2 10.1 113 223-338 152-293 (374)
140 PRK03612 spermidine synthase; 98.0 2.1E-05 4.5E-10 82.7 9.7 110 223-335 299-437 (521)
141 PRK04457 spermidine synthase; 98.0 1.2E-05 2.6E-10 77.3 7.3 92 223-317 68-171 (262)
142 PF01728 FtsJ: FtsJ-like methy 98.0 1.8E-05 3.9E-10 70.9 6.8 135 220-357 22-178 (181)
143 PRK00274 ksgA 16S ribosomal RN 98.0 2.2E-05 4.8E-10 75.6 7.7 67 224-292 45-114 (272)
144 PRK03522 rumB 23S rRNA methylu 97.9 5.2E-05 1.1E-09 74.5 10.2 86 224-317 176-268 (315)
145 KOG1499 Protein arginine N-met 97.9 1.3E-05 2.9E-10 80.0 5.9 95 223-317 62-161 (346)
146 TIGR00478 tly hemolysin TlyA f 97.9 5.7E-05 1.2E-09 71.8 9.8 97 205-317 60-165 (228)
147 PHA03412 putative methyltransf 97.9 3.7E-05 8.1E-10 73.7 8.5 90 225-317 53-157 (241)
148 KOG1269 SAM-dependent methyltr 97.9 8.1E-06 1.7E-10 82.5 4.0 90 225-317 114-209 (364)
149 PF01135 PCMT: Protein-L-isoas 97.9 1.3E-05 2.9E-10 75.0 4.4 82 224-317 75-166 (209)
150 TIGR00755 ksgA dimethyladenosi 97.9 8.6E-05 1.9E-09 70.5 9.9 67 223-293 31-104 (253)
151 COG0220 Predicted S-adenosylme 97.8 4.6E-05 9.9E-10 72.4 7.3 94 223-317 50-158 (227)
152 COG2519 GCD14 tRNA(1-methylade 97.8 9.7E-05 2.1E-09 71.3 9.4 115 207-338 85-216 (256)
153 COG2518 Pcm Protein-L-isoaspar 97.8 0.00011 2.3E-09 69.3 9.3 82 224-317 75-163 (209)
154 KOG2899 Predicted methyltransf 97.8 0.00013 2.8E-09 70.4 9.0 100 224-326 61-215 (288)
155 PLN02366 spermidine synthase 97.8 0.00031 6.8E-09 69.5 12.1 92 223-317 93-200 (308)
156 PF01739 CheR: CheR methyltran 97.7 4.6E-05 1E-09 70.8 5.8 94 220-317 31-169 (196)
157 PF11968 DUF3321: Putative met 97.7 9.1E-05 2E-09 70.1 7.7 114 220-346 51-185 (219)
158 TIGR00417 speE spermidine synt 97.7 8E-05 1.7E-09 71.6 7.4 91 224-317 75-180 (270)
159 PTZ00338 dimethyladenosine tra 97.7 0.00011 2.5E-09 72.1 8.5 66 224-293 39-111 (294)
160 PLN02781 Probable caffeoyl-CoA 97.7 0.00023 4.9E-09 67.4 9.5 87 223-317 70-172 (234)
161 KOG1975 mRNA cap methyltransfe 97.7 9.8E-05 2.1E-09 73.6 7.2 93 223-317 119-231 (389)
162 PF03291 Pox_MCEL: mRNA cappin 97.7 5.6E-05 1.2E-09 75.4 5.6 93 223-317 64-180 (331)
163 TIGR02085 meth_trns_rumB 23S r 97.7 0.00029 6.3E-09 71.1 10.5 126 224-361 236-374 (374)
164 PRK01544 bifunctional N5-gluta 97.7 0.00011 2.3E-09 77.2 7.6 95 222-317 348-456 (506)
165 PLN02672 methionine S-methyltr 97.6 0.00021 4.4E-09 81.0 10.0 115 224-341 121-303 (1082)
166 TIGR00479 rumA 23S rRNA (uraci 97.6 0.00037 8E-09 71.1 11.0 107 224-339 295-417 (431)
167 PF08704 GCD14: tRNA methyltra 97.6 0.00012 2.7E-09 70.4 6.8 116 207-338 31-167 (247)
168 PF05724 TPMT: Thiopurine S-me 97.6 6.4E-05 1.4E-09 70.7 4.8 91 224-317 40-149 (218)
169 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00015 3.3E-09 78.8 7.3 111 224-337 541-675 (702)
170 COG1041 Predicted DNA modifica 97.5 0.00079 1.7E-08 67.7 10.7 141 191-339 169-327 (347)
171 COG4627 Uncharacterized protei 97.4 4.3E-05 9.3E-10 69.3 0.8 44 273-317 37-80 (185)
172 PF12147 Methyltransf_20: Puta 97.4 0.00065 1.4E-08 67.0 8.7 97 220-317 135-243 (311)
173 PF07942 N2227: N2227-like pro 97.4 0.0011 2.4E-08 64.6 9.9 131 207-343 40-243 (270)
174 PF10294 Methyltransf_16: Puta 97.4 0.00091 2E-08 60.4 8.7 91 224-317 48-150 (173)
175 PRK04148 hypothetical protein; 97.4 0.0011 2.4E-08 58.5 8.8 66 224-292 19-86 (134)
176 PF05185 PRMT5: PRMT5 arginine 97.3 0.0005 1.1E-08 71.3 7.5 93 223-317 188-291 (448)
177 KOG3178 Hydroxyindole-O-methyl 97.3 0.0013 2.9E-08 65.9 10.1 89 221-317 177-269 (342)
178 COG1352 CheR Methylase of chem 97.3 0.0014 3.1E-08 63.8 9.5 94 220-317 96-235 (268)
179 PRK15128 23S rRNA m(5)C1962 me 97.3 0.00077 1.7E-08 68.9 7.7 91 224-317 223-333 (396)
180 COG2263 Predicted RNA methylas 97.2 0.0018 3.9E-08 60.4 8.9 112 223-341 47-168 (198)
181 PF01170 UPF0020: Putative RNA 97.2 0.0008 1.7E-08 61.2 6.3 113 224-342 31-171 (179)
182 PRK10909 rsmD 16S rRNA m(2)G96 96.9 0.0022 4.8E-08 59.7 6.6 67 224-292 56-130 (199)
183 COG0030 KsgA Dimethyladenosine 96.9 0.0033 7.2E-08 61.0 8.1 91 194-292 9-104 (259)
184 PLN02476 O-methyltransferase 96.9 0.0037 8.1E-08 61.3 8.0 87 223-317 120-222 (278)
185 KOG3987 Uncharacterized conser 96.9 0.00081 1.7E-08 63.9 3.2 116 224-347 115-265 (288)
186 COG0293 FtsJ 23S rRNA methylas 96.8 0.014 3E-07 55.0 11.0 149 204-362 29-203 (205)
187 KOG0820 Ribosomal RNA adenine 96.8 0.0048 1E-07 60.6 8.0 78 207-290 46-130 (315)
188 PRK11933 yebU rRNA (cytosine-C 96.8 0.018 4E-07 60.2 12.7 109 224-334 116-262 (470)
189 COG4122 Predicted O-methyltran 96.7 0.0087 1.9E-07 56.8 9.3 87 223-317 61-160 (219)
190 KOG1500 Protein arginine N-met 96.7 0.0072 1.6E-07 61.1 8.8 90 223-317 179-276 (517)
191 PRK11760 putative 23S rRNA C24 96.7 0.0034 7.3E-08 63.4 6.4 67 223-292 213-279 (357)
192 PF01596 Methyltransf_3: O-met 96.7 0.0051 1.1E-07 57.6 7.1 87 223-317 47-149 (205)
193 KOG1661 Protein-L-isoaspartate 96.4 0.0094 2E-07 56.7 6.9 82 225-317 86-187 (237)
194 KOG2352 Predicted spermine/spe 96.4 0.01 2.2E-07 62.1 7.7 92 224-317 51-155 (482)
195 COG3963 Phospholipid N-methylt 96.3 0.0089 1.9E-07 55.1 6.3 110 205-317 34-150 (194)
196 PRK11727 23S rRNA mA1618 methy 96.3 0.0075 1.6E-07 60.2 6.0 68 224-293 117-199 (321)
197 PRK05031 tRNA (uracil-5-)-meth 96.1 0.021 4.5E-07 57.5 8.5 123 225-361 210-361 (362)
198 PLN02823 spermine synthase 96.1 0.018 3.8E-07 57.9 7.8 92 223-317 105-214 (336)
199 TIGR00095 RNA methyltransferas 95.8 0.03 6.4E-07 51.5 7.0 88 224-317 52-153 (189)
200 PF02527 GidB: rRNA small subu 95.6 0.012 2.7E-07 54.2 4.0 83 225-317 52-142 (184)
201 COG1092 Predicted SAM-dependen 95.6 0.05 1.1E-06 55.9 8.4 92 224-317 220-330 (393)
202 COG1189 Predicted rRNA methyla 95.5 0.15 3.2E-06 49.3 11.0 87 223-317 81-172 (245)
203 PRK04338 N(2),N(2)-dimethylgua 95.5 0.029 6.3E-07 57.2 6.5 85 224-317 60-152 (382)
204 PF02475 Met_10: Met-10+ like- 95.5 0.02 4.2E-07 53.6 4.8 85 223-317 103-196 (200)
205 PLN02589 caffeoyl-CoA O-methyl 95.2 0.054 1.2E-06 52.2 7.0 87 223-317 81-184 (247)
206 PRK00050 16S rRNA m(4)C1402 me 95.2 0.035 7.7E-07 54.9 5.8 83 207-293 7-100 (296)
207 PF00398 RrnaAD: Ribosomal RNA 95.2 0.056 1.2E-06 51.8 7.0 92 193-292 8-106 (262)
208 PF09445 Methyltransf_15: RNA 94.9 0.054 1.2E-06 49.3 5.7 65 224-291 2-77 (163)
209 KOG3191 Predicted N6-DNA-methy 94.5 0.73 1.6E-05 43.3 12.1 140 194-336 15-187 (209)
210 COG0144 Sun tRNA and rRNA cyto 94.5 0.84 1.8E-05 46.1 13.5 119 208-333 148-307 (355)
211 PF09243 Rsm22: Mitochondrial 94.4 0.15 3.4E-06 49.4 8.0 86 223-313 35-131 (274)
212 PRK11783 rlmL 23S rRNA m(2)G24 94.4 0.18 3.8E-06 55.3 9.1 71 245-317 258-341 (702)
213 PRK13699 putative methylase; P 94.4 0.09 2E-06 49.8 6.1 77 269-346 4-100 (227)
214 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.3 0.078 1.7E-06 51.5 5.4 76 283-361 158-256 (256)
215 COG0421 SpeE Spermidine syntha 94.1 0.25 5.4E-06 48.6 8.6 92 223-317 78-184 (282)
216 KOG2904 Predicted methyltransf 93.6 0.16 3.4E-06 50.3 6.2 66 224-291 151-230 (328)
217 cd00315 Cyt_C5_DNA_methylase C 93.6 0.93 2E-05 43.9 11.6 132 225-359 3-163 (275)
218 PRK00536 speE spermidine synth 93.6 0.42 9.2E-06 46.6 9.1 100 205-317 55-165 (262)
219 TIGR03439 methyl_EasF probable 93.4 0.33 7.1E-06 48.6 8.2 91 224-317 79-191 (319)
220 PF08123 DOT1: Histone methyla 93.1 0.17 3.6E-06 47.5 5.3 89 223-317 44-152 (205)
221 KOG2915 tRNA(1-methyladenosine 93.0 0.53 1.1E-05 46.6 8.8 116 207-338 96-231 (314)
222 COG0357 GidB Predicted S-adeno 92.7 1.8 4E-05 41.1 11.8 112 224-342 70-195 (215)
223 PF01269 Fibrillarin: Fibrilla 92.7 1 2.2E-05 43.3 10.0 128 225-361 77-229 (229)
224 TIGR02143 trmA_only tRNA (urac 92.7 0.16 3.4E-06 51.1 4.8 50 225-276 201-256 (353)
225 PF13679 Methyltransf_32: Meth 92.7 0.32 6.9E-06 42.2 6.1 30 223-252 27-62 (141)
226 PF05958 tRNA_U5-meth_tr: tRNA 92.5 0.2 4.4E-06 50.3 5.4 66 207-277 185-256 (352)
227 PF01564 Spermine_synth: Sperm 92.1 1.4 3E-05 42.2 10.3 92 223-317 78-185 (246)
228 KOG3420 Predicted RNA methylas 92.0 0.2 4.4E-06 45.6 4.1 68 224-293 51-124 (185)
229 TIGR01444 fkbM_fam methyltrans 92.0 0.2 4.3E-06 42.5 3.9 28 225-252 2-31 (143)
230 KOG2187 tRNA uracil-5-methyltr 91.3 0.18 4E-06 53.3 3.6 53 223-277 385-443 (534)
231 KOG1663 O-methyltransferase [S 91.0 0.58 1.3E-05 45.1 6.3 88 224-317 76-177 (237)
232 COG4798 Predicted methyltransf 90.4 1.1 2.4E-05 42.5 7.5 120 224-347 51-212 (238)
233 COG2520 Predicted methyltransf 90.4 1.3 2.9E-05 44.8 8.6 116 220-346 189-326 (341)
234 COG2265 TrmA SAM-dependent met 90.2 0.45 9.7E-06 49.5 5.2 64 224-289 296-368 (432)
235 PF02384 N6_Mtase: N-6 DNA Met 89.5 0.9 2E-05 44.1 6.5 92 224-317 49-177 (311)
236 TIGR02987 met_A_Alw26 type II 89.2 0.6 1.3E-05 49.1 5.4 19 224-242 34-52 (524)
237 COG0116 Predicted N6-adenine-s 88.9 2.5 5.5E-05 43.5 9.4 94 194-291 163-307 (381)
238 PF04816 DUF633: Family of unk 88.4 7.2 0.00016 36.6 11.5 111 225-344 1-126 (205)
239 KOG2798 Putative trehalase [Ca 88.4 2.2 4.7E-05 43.2 8.3 41 207-248 134-177 (369)
240 KOG4589 Cell division protein 88.1 3.2 6.9E-05 39.4 8.7 129 224-363 72-229 (232)
241 PRK11524 putative methyltransf 87.6 0.95 2.1E-05 43.9 5.2 70 269-340 11-101 (284)
242 COG3897 Predicted methyltransf 87.0 0.58 1.3E-05 44.3 3.2 85 223-317 81-172 (218)
243 TIGR00308 TRM1 tRNA(guanine-26 86.7 1.2 2.6E-05 45.5 5.5 86 222-317 46-141 (374)
244 KOG1709 Guanidinoacetate methy 86.5 1 2.3E-05 43.4 4.6 86 225-317 105-200 (271)
245 PF03269 DUF268: Caenorhabditi 85.9 0.41 8.8E-06 44.0 1.6 38 280-317 60-105 (177)
246 KOG3201 Uncharacterized conser 85.5 1.3 2.7E-05 41.2 4.5 109 224-337 32-161 (201)
247 PF07757 AdoMet_MTase: Predict 84.6 0.66 1.4E-05 39.9 2.1 24 225-248 62-85 (112)
248 TIGR00675 dcm DNA-methyltransf 84.3 9.9 0.00021 37.6 10.6 132 225-359 1-160 (315)
249 PF06859 Bin3: Bicoid-interact 84.0 0.37 7.9E-06 41.4 0.3 34 283-317 1-38 (110)
250 COG0742 N6-adenine-specific me 83.1 4 8.8E-05 38.1 6.8 91 224-317 46-148 (187)
251 PLN02668 indole-3-acetate carb 82.9 2.1 4.6E-05 44.0 5.4 20 278-298 157-176 (386)
252 PF03492 Methyltransf_7: SAM d 82.7 3.4 7.3E-05 41.5 6.6 25 273-298 97-121 (334)
253 COG1889 NOP1 Fibrillarin-like 81.5 20 0.00044 34.4 10.8 86 225-317 80-174 (231)
254 COG1064 AdhP Zn-dependent alco 80.4 4 8.7E-05 41.4 6.2 80 226-317 171-253 (339)
255 PF05971 Methyltransf_10: Prot 80.0 8 0.00017 38.6 8.1 85 207-294 88-188 (299)
256 PF03602 Cons_hypoth95: Conser 79.8 1.2 2.6E-05 40.8 2.1 89 224-317 45-147 (183)
257 KOG2730 Methylase [General fun 78.5 1.9 4.1E-05 41.7 3.0 118 190-317 68-196 (263)
258 cd08254 hydroxyacyl_CoA_DH 6-h 77.8 10 0.00022 36.1 7.9 81 225-317 169-257 (338)
259 COG4076 Predicted RNA methylas 76.2 3.6 7.8E-05 39.1 4.1 87 224-317 35-129 (252)
260 KOG3115 Methyltransferase-like 76.1 2.1 4.6E-05 41.0 2.6 21 222-243 62-82 (249)
261 PF00145 DNA_methylase: C-5 cy 74.8 8.7 0.00019 36.5 6.6 132 225-360 3-163 (335)
262 PRK10742 putative methyltransf 74.7 8 0.00017 37.7 6.3 120 208-334 78-212 (250)
263 cd08283 FDH_like_1 Glutathione 74.2 12 0.00025 37.4 7.6 92 224-317 187-300 (386)
264 PF10672 Methyltrans_SAM: S-ad 72.2 2 4.4E-05 42.4 1.6 92 224-317 126-232 (286)
265 PF10354 DUF2431: Domain of un 70.3 56 0.0012 29.5 10.4 111 228-339 3-149 (166)
266 PF13578 Methyltransf_24: Meth 70.0 0.8 1.7E-05 37.1 -1.5 88 226-317 1-99 (106)
267 PF01555 N6_N4_Mtase: DNA meth 69.2 4.2 9E-05 36.4 2.8 45 302-346 35-87 (231)
268 COG0270 Dcm Site-specific DNA 68.9 34 0.00073 34.0 9.4 133 224-360 5-168 (328)
269 PF04445 SAM_MT: Putative SAM- 67.6 11 0.00023 36.5 5.3 83 208-295 65-163 (234)
270 PF11899 DUF3419: Protein of u 67.2 5.8 0.00013 40.7 3.7 50 267-317 277-328 (380)
271 KOG1099 SAM-dependent methyltr 65.7 8.7 0.00019 37.6 4.3 89 222-317 42-157 (294)
272 PF07091 FmrO: Ribosomal RNA m 65.1 14 0.00031 36.0 5.7 70 222-294 106-182 (251)
273 KOG2793 Putative N2,N2-dimethy 60.4 19 0.00041 35.0 5.6 91 224-317 89-193 (248)
274 KOG1501 Arginine N-methyltrans 58.6 11 0.00024 40.0 3.9 92 224-317 69-168 (636)
275 PRK01747 mnmC bifunctional tRN 57.5 25 0.00055 38.1 6.6 63 269-338 151-223 (662)
276 PF14314 Methyltrans_Mon: Viru 57.0 78 0.0017 35.2 10.1 156 203-363 307-502 (675)
277 PRK10458 DNA cytosine methylas 55.3 1.4E+02 0.0029 31.8 11.3 37 221-259 88-124 (467)
278 COG2022 ThiG Uncharacterized e 54.8 37 0.00081 33.2 6.5 79 109-247 130-208 (262)
279 PF01189 Nol1_Nop2_Fmu: NOL1/N 53.9 18 0.0004 35.3 4.4 108 224-333 88-238 (283)
280 PF01555 N6_N4_Mtase: DNA meth 53.4 33 0.00071 30.6 5.7 50 207-261 180-229 (231)
281 CHL00162 thiG thiamin biosynth 53.1 41 0.0009 33.1 6.6 85 101-247 131-215 (267)
282 PRK07417 arogenate dehydrogena 47.9 59 0.0013 31.2 6.8 78 228-317 6-85 (279)
283 PRK09424 pntA NAD(P) transhydr 47.7 79 0.0017 33.9 8.2 89 224-317 167-279 (509)
284 PF03059 NAS: Nicotianamine sy 47.5 66 0.0014 31.8 7.1 90 224-317 123-224 (276)
285 PRK11524 putative methyltransf 46.7 47 0.001 32.2 6.0 53 207-264 197-249 (284)
286 COG0541 Ffh Signal recognition 46.5 77 0.0017 33.5 7.7 136 224-363 102-269 (451)
287 PRK09880 L-idonate 5-dehydroge 46.1 94 0.002 30.3 8.0 82 225-317 173-260 (343)
288 PF00107 ADH_zinc_N: Zinc-bind 45.5 40 0.00086 27.6 4.6 76 231-317 1-83 (130)
289 cd08232 idonate-5-DH L-idonate 43.6 1.2E+02 0.0025 29.1 8.1 82 225-317 169-256 (339)
290 COG1063 Tdh Threonine dehydrog 43.0 99 0.0021 30.9 7.8 83 224-317 171-263 (350)
291 COG4262 Predicted spermidine s 42.5 1.1E+02 0.0023 32.2 7.9 116 222-344 290-438 (508)
292 COG5459 Predicted rRNA methyla 41.9 28 0.0006 36.2 3.6 43 275-317 176-219 (484)
293 PRK13699 putative methylase; P 41.6 67 0.0015 30.4 6.0 52 207-263 152-203 (227)
294 PF04672 Methyltransf_19: S-ad 40.9 62 0.0013 31.9 5.7 95 221-317 68-184 (267)
295 PF04989 CmcI: Cephalosporin h 40.6 49 0.0011 31.4 4.9 100 207-317 23-141 (206)
296 PF05690 ThiG: Thiazole biosyn 40.6 26 0.00056 34.2 3.0 80 108-247 122-201 (247)
297 KOG2671 Putative RNA methylase 39.1 22 0.00048 36.6 2.4 68 223-290 210-291 (421)
298 cd05188 MDR Medium chain reduc 38.8 1.5E+02 0.0033 26.6 7.8 83 224-317 137-226 (271)
299 KOG1122 tRNA and rRNA cytosine 37.3 1.4E+02 0.0031 31.6 7.9 108 220-333 242-390 (460)
300 cd08234 threonine_DH_like L-th 36.4 1.6E+02 0.0034 28.0 7.7 82 225-317 163-251 (334)
301 cd08245 CAD Cinnamyl alcohol d 36.0 1.8E+02 0.0039 27.6 8.1 82 225-317 166-250 (330)
302 cd08294 leukotriene_B4_DH_like 35.8 1.6E+02 0.0035 27.8 7.7 80 226-317 148-235 (329)
303 cd08261 Zn_ADH7 Alcohol dehydr 33.6 1.8E+02 0.004 27.8 7.8 82 225-317 163-252 (337)
304 cd08230 glucose_DH Glucose deh 33.5 1.6E+02 0.0035 28.7 7.4 83 225-317 176-263 (355)
305 KOG0780 Signal recognition par 33.1 3.4E+02 0.0073 28.9 9.7 122 234-359 120-264 (483)
306 PF07101 DUF1363: Protein of u 32.1 16 0.00035 31.0 0.2 10 226-235 7-16 (124)
307 TIGR01202 bchC 2-desacetyl-2-h 30.9 1.7E+02 0.0036 28.2 7.0 76 225-317 148-225 (308)
308 PHA02119 hypothetical protein 30.3 1.1E+02 0.0023 24.7 4.4 52 303-362 15-87 (87)
309 PHA01634 hypothetical protein 28.1 70 0.0015 28.9 3.4 29 223-251 30-59 (156)
310 cd05278 FDH_like Formaldehyde 28.0 2.5E+02 0.0054 26.8 7.6 82 223-317 170-261 (347)
311 TIGR00006 S-adenosyl-methyltra 27.9 1.6E+02 0.0035 29.5 6.4 83 207-293 8-102 (305)
312 TIGR02822 adh_fam_2 zinc-bindi 27.3 2.9E+02 0.0063 26.8 8.1 78 225-317 169-248 (329)
313 COG2384 Predicted SAM-dependen 27.1 5.9E+02 0.013 24.7 11.7 68 222-292 18-94 (226)
314 KOG2920 Predicted methyltransf 27.1 44 0.00095 33.3 2.2 33 283-317 196-228 (282)
315 KOG4058 Uncharacterized conser 25.8 42 0.00091 31.0 1.7 43 207-252 60-104 (199)
316 KOG2651 rRNA adenine N-6-methy 25.3 1.1E+02 0.0024 32.1 4.8 29 221-249 153-182 (476)
317 TIGR03451 mycoS_dep_FDH mycoth 23.6 3.7E+02 0.008 26.2 8.1 82 225-317 180-270 (358)
318 PF02254 TrkA_N: TrkA-N domain 23.1 1.8E+02 0.0038 23.4 4.9 99 230-337 4-112 (116)
319 cd05285 sorbitol_DH Sorbitol d 23.0 4.1E+02 0.009 25.5 8.2 83 223-317 165-259 (343)
320 cd08237 ribitol-5-phosphate_DH 22.8 2.8E+02 0.0062 27.0 7.1 81 224-317 166-250 (341)
321 COG0287 TyrA Prephenate dehydr 22.5 4.1E+02 0.0088 26.1 8.0 83 226-317 7-92 (279)
322 COG1102 Cmk Cytidylate kinase 22.0 1.1E+02 0.0024 28.5 3.6 35 228-266 9-44 (179)
323 PF02636 Methyltransf_28: Puta 21.7 69 0.0015 30.3 2.4 19 222-241 20-38 (252)
324 PF02153 PDH: Prephenate dehyd 21.5 2.4E+02 0.0052 26.9 6.1 71 235-317 1-73 (258)
325 KOG1596 Fibrillarin and relate 21.2 5E+02 0.011 26.0 8.1 86 225-317 160-255 (317)
326 COG0773 MurC UDP-N-acetylmuram 21.1 1.4E+02 0.0031 31.7 4.7 58 230-293 18-76 (459)
327 cd05281 TDH Threonine dehydrog 21.0 4.7E+02 0.01 25.1 8.1 81 226-317 168-256 (341)
328 COG2933 Predicted SAM-dependen 20.2 1.7E+02 0.0038 29.4 4.8 65 224-292 214-279 (358)
329 KOG2198 tRNA cytosine-5-methyl 20.0 5.1E+02 0.011 27.0 8.2 19 224-242 158-176 (375)
330 PLN02586 probable cinnamyl alc 20.0 3.1E+02 0.0068 27.0 6.8 82 226-317 188-272 (360)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.8e-44 Score=367.09 Aligned_cols=215 Identities=28% Similarity=0.401 Sum_probs=171.3
Q ss_pred HHhcCCCCC-CCCccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCccccchhcccCCCCCCCccccccCceecccCCc
Q 017839 126 LILHGCHPL-PRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQKSPNLGFDPASEKSSSFLAFKSEL 204 (365)
Q Consensus 126 l~~r~C~pl-prrrCl~~~p~~~p~p~p~s~w~~~p~~~~~~W~~~~~~~~~~l~~~~~~~gf~~~~~e~~~W~~~~g~~ 204 (365)
..+|||||. +|.+||+|+|++|..|+ +| |.++|++|+ .|++|++|++.|..| +|+..+++.|.|++||+
T Consensus 23 ~rERhCP~~~~~~~CLVp~P~gYk~P~---~W---P~SRd~iW~--~Nvph~~L~~~K~~q--nWv~~~gd~~~FPgggt 92 (506)
T PF03141_consen 23 HRERHCPPPEERLRCLVPPPKGYKTPI---PW---PKSRDYIWY--ANVPHTKLAEEKADQ--NWVRVEGDKFRFPGGGT 92 (506)
T ss_pred EeeccCcCCCCCCccccCCCccCCCCC---CC---Ccccceeee--cccCchHHhhhcccc--cceeecCCEEEeCCCCc
Confidence 469999995 45599999999665554 44 455599997 467999999999888 66788999999999988
Q ss_pred cc------hHHHHhhhccc--cCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccC-CChhHHHHHHHcCCCcEEec-cC
Q 017839 205 DL------PVTQFLDLAKA--ANSVIRLGIDVGGATGSFAARMKLYNITILTTTMN-LGAPYSEAAALRGLVPLHVP-LQ 274 (365)
Q Consensus 205 ~f------~I~~vL~~~p~--~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ld-l~~~~~e~a~~Rg~v~~~~g-~a 274 (365)
+| +|+++-++.+. .+|.+|++||||||+|+||++|.++||++++++++ .++.+.|+|++||+.+++.. ..
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 88 56555555443 44889999999999999999999999999887764 56678899999997555443 37
Q ss_pred CCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC---------C---cchhhh---hHHHHHHhhCCceee
Q 017839 275 QRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG---------K---ASDLEN---VYGPLIGKLGYKKVK 339 (365)
Q Consensus 275 e~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG---------~---~~~l~~---~~~~~l~~~gfk~i~ 339 (365)
++|||++++||+|||++|+.+|.+.+. +.|.|++||||||| . .++..+ ...++.+++||+++
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~v- 249 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKV- 249 (506)
T ss_pred ccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999997654 79999999999999 1 112222 34456667766665
Q ss_pred EEeecCCCCCCCceEEEEeeecCCC
Q 017839 340 WATANKPNSKNGEVYLTALLQKPVS 364 (365)
Q Consensus 340 w~v~~K~d~~~~~~y~sall~KP~~ 364 (365)
++|.| .||||||.+
T Consensus 250 ---a~~~~--------~aIwqKp~~ 263 (506)
T PF03141_consen 250 ---AEKGD--------TAIWQKPTN 263 (506)
T ss_pred ---eeeCC--------EEEEeccCC
Confidence 55555 799999975
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=1.2e-18 Score=165.30 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=75.9
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHcCC------CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALRGL------VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~Rg~------v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||||.+|..+++.. ..|++ +|++..|.+.++++-. +.|++++|++|||+|++||+|+++++|++
T Consensus 54 ~vLDva~GTGd~a~~~~k~~g~g~v~~--~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn 131 (238)
T COG2226 54 KVLDVACGTGDMALLLAKSVGTGEVVG--LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131 (238)
T ss_pred EEEEecCCccHHHHHHHHhcCCceEEE--EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence 35999999999999999873 56665 5666889887776521 67899999999999999999999999998
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+ .+.+|+|++|||||||
T Consensus 132 v~d---~~~aL~E~~RVlKpgG 150 (238)
T COG2226 132 VTD---IDKALKEMYRVLKPGG 150 (238)
T ss_pred CCC---HHHHHHHHHHhhcCCe
Confidence 775 4589999999999999
No 3
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.77 E-value=7.2e-19 Score=180.19 Aligned_cols=223 Identities=19% Similarity=0.238 Sum_probs=160.6
Q ss_pred cCCccchhccChhHHhhccCCCCCCCCC--CChHHHHHHHhcCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 017839 90 LSPIASSCHNHPDLLHNYMSYTPFTLCP--HDTDLQETLILHGC-HPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVI 166 (365)
Q Consensus 90 ~~~~~~~c~~~~~~l~~~m~y~~~~~Cp--~d~~~~~~l~~r~C-~plprrrCl~~~p~~~p~p~p~s~w~~~p~~~~~~ 166 (365)
--|..|+|...++. .+....|. ||++.||+--++.| .|+|.... ......+.+||+.+- + +|.+
T Consensus 259 qKp~~~~Cy~~r~~------~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~~~~~~WP~RL~-~-~P~r--- 325 (506)
T PF03141_consen 259 QKPTNNSCYQKRKP------GKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAGGWLPKWPERLN-A-VPPR--- 325 (506)
T ss_pred eccCCchhhhhccC------CCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccccCCCCChhhhc-c-Cchh---
Confidence 45778899876543 45668999 89999999999988 66665422 111256788999984 4 4433
Q ss_pred ccCCCccccchhcccCCCCCC--CccccccCceecccCCccchHHHHhh--hccccCCCCceEEEEcCcccHHHHHHhhc
Q 017839 167 WSKYNCKSFSCLVQKSPNLGF--DPASEKSSSFLAFKSELDLPVTQFLD--LAKAANSVIRLGIDVGGATGSFAARMKLY 242 (365)
Q Consensus 167 W~~~~~~~~~~l~~~~~~~gf--~~~~~e~~~W~~~~g~~~f~I~~vL~--~~p~~~g~iRi~LDIGCGtG~faa~Lae~ 242 (365)
|++.. ..|. +...++.+.|...-. .|. .++. +.. +.+|+|+|+..|.|.||++|.+.
T Consensus 326 -----------l~~~~-~~g~~~e~F~~Dt~~Wk~~V~--~Y~--~l~~~~i~~---~~iRNVMDMnAg~GGFAAAL~~~ 386 (506)
T PF03141_consen 326 -----------LSSGS-IPGISPEEFKEDTKHWKKRVS--HYK--KLLGLAIKW---GRIRNVMDMNAGYGGFAAALIDD 386 (506)
T ss_pred -----------hhcCC-cCCCCHHHHHHHHHHHHHHHH--HHH--Hhhcccccc---cceeeeeeecccccHHHHHhccC
Confidence 22211 1221 123567788865421 111 1222 333 78999999999999999999999
Q ss_pred CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-----
Q 017839 243 NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG----- 317 (365)
Q Consensus 243 gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG----- 317 (365)
.+.|+.+........+..+..||++..+....|.+++.++++|+||+.+.|..+.+...++..|.||+|||||||
T Consensus 387 ~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 387 PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred CceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 998876544445667788999999999999999999999999999999999999988889999999999999999
Q ss_pred CcchhhhhHHHHHHhhCCceeeEEeec
Q 017839 318 KASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 318 ~~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
...+.......+++++.|+...+....
T Consensus 467 D~~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 467 DTVDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred ccHHHHHHHHHHHHhCcceEEEEecCC
Confidence 222222235567788777766554433
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.70 E-value=1.5e-17 Score=157.10 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=66.1
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||||.++..++++ + ..|++ +|++..|.+.+.++ + .+.++++++++|||+|++||+|+|+++++
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~~~~v~~--vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGPNGKVVG--VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS---EEEE--EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred EEEEeCCChHHHHHHHHHHCCCccEEEE--ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 4599999999999999875 3 46665 45668888776653 2 46789999999999999999999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+..+ .+.+|+|++|||||||
T Consensus 128 n~~d---~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 128 NFPD---RERALREMYRVLKPGG 147 (233)
T ss_dssp G-SS---HHHHHHHHHHHEEEEE
T ss_pred hhCC---HHHHHHHHHHHcCCCe
Confidence 8775 4479999999999999
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=4.8e-17 Score=127.30 Aligned_cols=87 Identities=26% Similarity=0.342 Sum_probs=70.4
Q ss_pred EEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCC---CcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 226 IDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 226 LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
||+|||+|.++..|+++ +..+++++ .+..+.+.++++.. +.+..++.+++||++++||+|++..+++|+ + +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~--~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGID--ISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E--D 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEE--S-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S--H
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEe--CCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c--C
Confidence 89999999999999999 78888755 45677777666532 348889999999999999999999999877 2 4
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
.+.+++|+.|||||||
T Consensus 76 ~~~~l~e~~rvLk~gG 91 (95)
T PF08241_consen 76 PEAALREIYRVLKPGG 91 (95)
T ss_dssp HHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHcCcCe
Confidence 5689999999999998
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=9.1e-15 Score=139.56 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=73.0
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHcC---------CCcEEeccCCCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALRG---------LVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~Rg---------~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.+||||||||.++..++++ + ..|++ +|++..|.+.+.++. .+.++.++++++||++++||+|++++
T Consensus 76 ~VLDlGcGtG~~~~~la~~~~~~~~V~g--vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 76 RVLDLCCGSGDLAFLLSEKVGSDGKVMG--LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred EEEEECCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 3599999999999999875 3 46765 556678887765431 25688899999999999999999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++|+.+ ++.+++|++|||||||
T Consensus 154 ~l~~~~d---~~~~l~ei~rvLkpGG 176 (261)
T PLN02233 154 GLRNVVD---RLKAMQEMYRVLKPGS 176 (261)
T ss_pred ccccCCC---HHHHHHHHHHHcCcCc
Confidence 9987764 4579999999999999
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.56 E-value=3.6e-14 Score=140.37 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=72.8
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..|+++ |..|++++ ++..+.+.+. +.| .+.++.+++..+||++++||+|++..+++|
T Consensus 121 ~VLDiGCG~G~~~~~La~~~g~~v~gvD--~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h 198 (340)
T PLN02244 121 RIVDVGCGIGGSSRYLARKYGANVKGIT--LSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEH 198 (340)
T ss_pred eEEEecCCCCHHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhc
Confidence 3599999999999999986 77888754 4455655443 234 367888999999999999999999999998
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+. ..++.|++|+|||||
T Consensus 199 ~~d~---~~~l~e~~rvLkpGG 217 (340)
T PLN02244 199 MPDK---RKFVQELARVAAPGG 217 (340)
T ss_pred cCCH---HHHHHHHHHHcCCCc
Confidence 8753 479999999999999
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.55 E-value=1.7e-14 Score=137.89 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=71.9
Q ss_pred CceEEEEcCcccHHHHHHhhc--C------CeEEEeccCCChhHHHHHHHc----CC-----CcEEeccCCCCCCCCCcc
Q 017839 222 IRLGIDVGGATGSFAARMKLY--N------ITILTTTMNLGAPYSEAAALR----GL-----VPLHVPLQQRLPLFDGVL 284 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--g------v~Vv~~~ldl~~~~~e~a~~R----g~-----v~~~~g~ae~LPF~D~SF 284 (365)
.+ +||++||||..|.++.++ . .+|+. +|++.+|....++| ++ +.++.++|+.|||+|++|
T Consensus 102 m~-~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v--~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 102 MK-VLDVAGGTGDIAFRILRHVKSQFGDRESKVTV--LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred Ce-EEEecCCcchhHHHHHHhhccccCCCCceEEE--EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 44 499999999999999875 1 34444 34456776554433 32 568889999999999999
Q ss_pred ceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.++++.+++|.+. +++|+|++|||||||
T Consensus 179 D~yTiafGIRN~th~---~k~l~EAYRVLKpGG 208 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHI---QKALREAYRVLKPGG 208 (296)
T ss_pred eeEEEecceecCCCH---HHHHHHHHHhcCCCc
Confidence 999999999999864 489999999999999
No 9
>PRK05785 hypothetical protein; Provisional
Probab=99.53 E-value=2.6e-14 Score=133.89 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=73.1
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
.+||||||||.++..++++ +..|++ +|++..|.+.+.++. .+++++++.+||+|++||+|+++++++|+.+ +
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~~~~v~g--vD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d---~ 126 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVFKYYVVA--LDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHASDN---I 126 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhcCCEEEE--ECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhccCC---H
Confidence 3599999999999999987 567776 556688888776553 5678899999999999999999999987654 4
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
+.+++|++|||||++
T Consensus 127 ~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 127 EKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHhcCce
Confidence 579999999999965
No 10
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.48 E-value=6.3e-13 Score=132.33 Aligned_cols=136 Identities=19% Similarity=0.149 Sum_probs=97.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc---CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR---GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||+|.++..+++. +.++++ +|.+..|.+.+.++ ..+.++.++++.+||++++||+|++..++++|.+
T Consensus 116 ~VLDLGcGtG~~~l~La~~~~~~~Vtg--VD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d 193 (340)
T PLN02490 116 KVVDVGGGTGFTTLGIVKHVDAKNVTI--LDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
T ss_pred EEEEEecCCcHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC
Confidence 3599999999999888764 356665 44556676665543 2367888999999999999999999999988875
Q ss_pred hhhHHHHHHHHHhhhCCCC-------Ccch---------------hhhhHHHHHHhhCCceeeEEeecCCC-C----CCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG-------KASD---------------LENVYGPLIGKLGYKKVKWATANKPN-S----KNG 351 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG-------~~~~---------------l~~~~~~~l~~~gfk~i~w~v~~K~d-~----~~~ 351 (365)
. +.+++|++|+||||| ...+ ..+.|.+++++.||+.+++....... + ..-
T Consensus 194 ~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~ 270 (340)
T PLN02490 194 P---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGL 270 (340)
T ss_pred H---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccc
Confidence 4 368999999999999 1000 12457789999999999877433321 1 122
Q ss_pred ceEEEEeeecCCC
Q 017839 352 EVYLTALLQKPVS 364 (365)
Q Consensus 352 ~~y~sall~KP~~ 364 (365)
.+=.+...+||-+
T Consensus 271 ~~~~~v~~~k~~~ 283 (340)
T PLN02490 271 IMGCSVTGVKPAS 283 (340)
T ss_pred eeeEEEEEecccc
Confidence 2224566777753
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=2.1e-13 Score=127.83 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=74.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCC-CcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
.+||+|||+|.++..+++.|..++++ |++..+.+.+.++.. ..++.++++.+||++++||+|+++.++ +|.++ +
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~~~--D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d--~ 119 (251)
T PRK10258 45 HVLDAGCGPGWMSRYWRERGSQVTAL--DLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGN--L 119 (251)
T ss_pred eEEEeeCCCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCC--H
Confidence 46999999999999999888888764 455778777766542 467889999999999999999999988 56643 4
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
..++.|+.|+|||||
T Consensus 120 ~~~l~~~~~~Lk~gG 134 (251)
T PRK10258 120 STALRELYRVVRPGG 134 (251)
T ss_pred HHHHHHHHHHcCCCe
Confidence 579999999999999
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.47 E-value=4.4e-13 Score=128.18 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=87.9
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.|||||||+|..+..+++. +.+|+++ |++..+.+.+.++ ..+.+..+++..+||++++||+|++..++.|+..
T Consensus 55 ~VLDiGcG~G~~a~~la~~~~~~v~gi--D~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~ 132 (263)
T PTZ00098 55 KVLDIGSGLGGGCKYINEKYGAHVHGV--DICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSY 132 (263)
T ss_pred EEEEEcCCCChhhHHHHhhcCCEEEEE--ECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCH
Confidence 3599999999999999764 6777764 4556776666554 2467788888899999999999999999888753
Q ss_pred hhhHHHHHHHHHhhhCCCC----------Ccch----h-------------hhhHHHHHHhhCCceeeEE
Q 017839 299 VIMMEFLFYDVDRVLRGGG----------KASD----L-------------ENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG----------~~~~----l-------------~~~~~~~l~~~gfk~i~w~ 341 (365)
.+...++++++|+||||| .... . .+.|..+++..||+.+.+.
T Consensus 133 -~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 133 -ADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 235689999999999999 0000 0 1257789999999988764
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=5.2e-13 Score=126.20 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=71.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCC-CCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRL-PLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~L-PF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..|+++|..|+++ |++..+.+.+.++ | .+.++.++++.+ ++.+++||+|++..++++
T Consensus 47 ~vLDiGcG~G~~a~~la~~g~~v~~v--D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAELGHQVILC--DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred EEEEeCCCchHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 45999999999999999999888764 5556776665442 3 246788888777 478899999999999977
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+. ..++.++.|+|||||
T Consensus 125 ~~~~---~~~l~~~~~~LkpgG 143 (255)
T PRK11036 125 VADP---KSVLQTLWSVLRPGG 143 (255)
T ss_pred hCCH---HHHHHHHHHHcCCCe
Confidence 6543 479999999999999
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.45 E-value=1.3e-13 Score=136.18 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=74.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..|++.|..|++ +|.+..+.+.+.++ + .+.++.++++.+|+.+++||+|+|..+++|+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~~V~G--ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGATVTG--VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 3599999999999999988888876 45556777666532 1 3567888999999999999999999999998
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++ +.++.++.|+|||||
T Consensus 212 ~d~---~~~L~~l~r~LkPGG 229 (322)
T PLN02396 212 ANP---AEFCKSLSALTIPNG 229 (322)
T ss_pred CCH---HHHHHHHHHHcCCCc
Confidence 764 479999999999999
No 15
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=9.1e-14 Score=113.12 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=71.2
Q ss_pred EEEEcCcccHHHHHHhhcC-----CeEEEeccCCChhHHHHHHHcC-----CCcEEeccCCCCCCCCCccceeEEcch-h
Q 017839 225 GIDVGGATGSFAARMKLYN-----ITILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQRLPLFDGVLDVVRCGHA-V 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g-----v~Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae~LPF~D~SFDlV~s~~~-L 293 (365)
|||+|||+|..+..+.+.. ..+++ +|+++.+.+.++++. .+.+++++++++|+.+++||+|+|... +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~g--vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIG--VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEE--EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEE--EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 5999999999999998763 67776 455678877776543 367899999999999999999999554 8
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|+ +++..+.++.++.++|||||
T Consensus 79 ~~~-~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHL-SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGS-SHHHHHHHHHHHHHTEEEEE
T ss_pred CCC-CHHHHHHHHHHHHHHhCCCC
Confidence 774 45567899999999999998
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=4.1e-13 Score=126.69 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=71.5
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.|||||||+|.++..|+++ +..|++ +|++..|.+.+.+++ +.++.++++.++ ++++||+|+|+.+++|..+
T Consensus 32 ~vLDlGcG~G~~~~~l~~~~p~~~v~g--vD~s~~~~~~a~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d--- 104 (255)
T PRK14103 32 RVVDLGCGPGNLTRYLARRWPGAVIEA--LDSSPEMVAAARERG-VDARTGDVRDWK-PKPDTDVVVSNAALQWVPE--- 104 (255)
T ss_pred EEEEEcCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHhcC-CcEEEcChhhCC-CCCCceEEEEehhhhhCCC---
Confidence 3599999999999999987 567776 455677888777665 678889988885 6789999999999965433
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
.+.++++++|+|||||
T Consensus 105 ~~~~l~~~~~~LkpgG 120 (255)
T PRK14103 105 HADLLVRWVDELAPGS 120 (255)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 3579999999999999
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=1.3e-12 Score=128.82 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=85.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHH--HHHc-----CCCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEA--AALR-----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~--a~~R-----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++.+|++.|. .|+++ |.+..+... +..+ ..+.+..++.+.+|+ +++||+|+|..+++|
T Consensus 125 ~VLDIGCG~G~~~~~la~~g~~~V~Gi--D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAGAKLVVGI--DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred EEEEeccCCcHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 469999999999999999874 47764 444444321 1111 135677888999999 899999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC---------Ccc--------h------------hhhhHHHHHHhhCCceeeEEeecC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG---------KAS--------D------------LENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG---------~~~--------~------------l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
+.+ +..+|++++|+||||| ... + -.+.+..++++.||+.++..-...
T Consensus 202 ~~d---p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 202 RRS---PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 764 3469999999999999 000 0 012467899999999988764433
No 18
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.41 E-value=6.1e-13 Score=114.08 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=66.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.|||||||+|.++..|++.|.++++++++ ..+.+. ..+.......+..++++++||+|+|..+++|..+ +.
T Consensus 25 ~vLDiGcG~G~~~~~l~~~~~~~~g~D~~--~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d---~~ 95 (161)
T PF13489_consen 25 RVLDIGCGTGSFLRALAKRGFEVTGVDIS--PQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD---PE 95 (161)
T ss_dssp EEEEESSTTSHHHHHHHHTTSEEEEEESS--HHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH---HH
T ss_pred EEEEEcCCCCHHHHHHHHhCCEEEEEECC--HHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc---HH
Confidence 45999999999999999999888875543 444433 2223333345567788999999999999987653 55
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.+|.++.|+|||||
T Consensus 96 ~~l~~l~~~LkpgG 109 (161)
T PF13489_consen 96 EFLKELSRLLKPGG 109 (161)
T ss_dssp HHHHHHHHCEEEEE
T ss_pred HHHHHHHHhcCCCC
Confidence 89999999999999
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.40 E-value=2.5e-12 Score=118.64 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=69.1
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..+++. +..+++++ ++..+.+.+.++ + .+.++.++++.+||++++||+|++..+++
T Consensus 48 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 48 SALDVCCGTADWSIALAEAVGPEGHVIGLD--FSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred EEEEeCCCcCHHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccc
Confidence 3599999999999999875 25677644 445665544332 2 25678889999999999999999999986
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++.+ ...++.|+.|+|||||
T Consensus 126 ~~~~---~~~~l~~~~~~Lk~gG 145 (231)
T TIGR02752 126 NVPD---YMQVLREMYRVVKPGG 145 (231)
T ss_pred cCCC---HHHHHHHHHHHcCcCe
Confidence 6543 3479999999999999
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=2.8e-12 Score=131.13 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=85.9
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc--C---CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR--G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R--g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..|+++ +..|++++ ++..+.+.+.++ + .+.+..++...+||++++||+|+|..+++|+.
T Consensus 269 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--iS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~ 346 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENFDVHVVGID--LSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ 346 (475)
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccC
Confidence 3599999999999999875 67777654 456676665443 2 35678889989999999999999999998876
Q ss_pred ChhhHHHHHHHHHhhhCCCC--------Cc-----chh-------------hhhHHHHHHhhCCceeeE
Q 017839 298 PVIMMEFLFYDVDRVLRGGG--------KA-----SDL-------------ENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG--------~~-----~~l-------------~~~~~~~l~~~gfk~i~w 340 (365)
+. +.++.|++|+||||| .. .+. .+.|.+++++.||+.+.+
T Consensus 347 d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 347 DK---PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred CH---HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 53 479999999999999 00 000 124678999999998754
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.39 E-value=4e-12 Score=125.29 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=84.7
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHH---HH----cCCCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAA---AL----RGLVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a---~~----Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
+.|||||||+|.++..++..|. .|++ +|.+..|...+ .. .+.+.+...+.+.+|+. ++||+|+|..+++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~G--iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVG--IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhh
Confidence 3469999999999999988875 4665 45555554321 11 12345566678889875 5899999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC---------Ccch---------h-----------hhhHHHHHHhhCCceeeEEeecC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG---------KASD---------L-----------ENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG---------~~~~---------l-----------~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
|+.+. ..+|+|++|+||||| .+.. . ...+.++++++||+.++.....+
T Consensus 200 H~~dp---~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 200 HRKSP---LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred ccCCH---HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 98653 469999999999999 0100 0 12346789999999998876555
Q ss_pred CC
Q 017839 346 PN 347 (365)
Q Consensus 346 ~d 347 (365)
..
T Consensus 277 tt 278 (314)
T TIGR00452 277 TT 278 (314)
T ss_pred CC
Confidence 43
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.33 E-value=7.9e-12 Score=114.39 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=69.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
+||+|||+|.++..|+++|.+|+++ |++..+.+.+. ..+. +.+..++...+++. ++||+|+|..+++++ +
T Consensus 34 vLDiGcG~G~~a~~La~~g~~V~gv--D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~-~ 109 (197)
T PRK11207 34 TLDLGCGNGRNSLYLAANGFDVTAW--DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL-E 109 (197)
T ss_pred EEEECCCCCHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC-C
Confidence 4999999999999999999888765 45556655443 3343 45667777778874 679999999998654 4
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
++....++.++.|+|||||
T Consensus 110 ~~~~~~~l~~i~~~LkpgG 128 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGG 128 (197)
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 4456789999999999999
No 23
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.32 E-value=1.9e-11 Score=111.01 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=88.8
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCC-C-CCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQR-L-PLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~-L-PF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.+||||||+|.++..+++. +..+++ +|++..+.+.+..++ +.++.++++. + ++++++||+|+|+.+++|..+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~g--iD~s~~~i~~a~~~~-~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d-- 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYG--IEIDQDGVLACVARG-VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN-- 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEE--EeCCHHHHHHHHHcC-CeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC--
Confidence 3599999999999999765 455554 555566666665555 5777787754 6 488999999999999977654
Q ss_pred hHHHHHHHHHhhhCCCC-------------------Ccc----------h-------hhhhHHHHHHhhCCceeeEEeec
Q 017839 301 MMEFLFYDVDRVLRGGG-------------------KAS----------D-------LENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG-------------------~~~----------~-------l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
.+.+++|+.|+++++. ... + ..+.+.++++..||+.+....-.
T Consensus 91 -~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 91 -PEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred -HHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence 3478999999999763 000 0 02246789999999987766554
Q ss_pred CCCCCCCceE
Q 017839 345 KPNSKNGEVY 354 (365)
Q Consensus 345 K~d~~~~~~y 354 (365)
-....+.|||
T Consensus 170 ~~~~~~~~~~ 179 (194)
T TIGR02081 170 VDGRGGREVR 179 (194)
T ss_pred cccccccccc
Confidence 4333556655
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=1e-11 Score=117.98 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=82.9
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.|||||||+|..+..+++. + ..|++ +|++..+.+.++++ + .+.++.++.+.+||++++||+|++..+++
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g~~~~v~g--vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVGPTGKVIG--VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhCCCCEEEE--ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 4599999999987766653 3 35665 45556676665542 3 35677889999999999999999999986
Q ss_pred cccChhhHHHHHHHHHhhhCCCC--------Ccch--------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG--------KASD--------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG--------~~~~--------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
++.+ ...++.|++|+||||| .... ..+.+..+++..||..++...
T Consensus 158 ~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 158 LSPD---KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred CCCC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 6554 3468999999999999 0000 112467889999998876543
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.30 E-value=3.9e-11 Score=108.91 Aligned_cols=89 Identities=24% Similarity=0.232 Sum_probs=70.5
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc-----CCCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR-----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R-----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..++++. ..+++++ .+..+.+.+.++ ..+.+..++++.+|+.+++||+|++..+++|
T Consensus 22 ~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d--~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 22 RVLDVGCGPGNDARELARRVGPEGRVVGID--RSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred EEEEeCCCCCHHHHHHHHhcCCCcEEEEEe--CCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhc
Confidence 45999999999999998752 4666644 445565555544 1256777888899999999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+ .+.++.++.++|||||
T Consensus 100 ~~~---~~~~l~~~~~~L~~gG 118 (241)
T PRK08317 100 LED---PARALAEIARVLRPGG 118 (241)
T ss_pred cCC---HHHHHHHHHHHhcCCc
Confidence 765 3479999999999999
No 26
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.29 E-value=3.6e-12 Score=121.06 Aligned_cols=90 Identities=20% Similarity=0.346 Sum_probs=73.6
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC-CcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.|+ ||||||.|.++..||+.|..|.+. |+++.+.+.+..+ |+ +.+....+++|-...++||+|+|..+++|.
T Consensus 61 ~~v-LDvGCGgG~Lse~mAr~Ga~Vtgi--D~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRV-LDVGCGGGILSEPLARLGASVTGI--DASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeE-EEecCCccHhhHHHHHCCCeeEEe--cCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 455 999999999999999999998874 5556677666532 32 446667788888777999999999999998
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++ +.+++++.+.+||||
T Consensus 138 ~dp---~~~~~~c~~lvkP~G 155 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGG 155 (243)
T ss_pred CCH---HHHHHHHHHHcCCCc
Confidence 764 469999999999999
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.27 E-value=1.6e-11 Score=115.95 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=69.3
Q ss_pred EEEEcCcccHHHHHHhh----cCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 225 GIDVGGATGSFAARMKL----YNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae----~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
+||||||||.++..+++ .+.++++ +|.+..|.+.+.++ + .+.++.+++..+|+++ ||+|+++.++
T Consensus 60 vLDlGcGtG~~~~~l~~~~~~~~~~v~g--vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l 135 (247)
T PRK15451 60 VYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTL 135 (247)
T ss_pred EEEEcccCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHH
Confidence 59999999999988876 2467776 45567787766543 2 3678889998998864 9999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++.+ .....++.+++|+|||||
T Consensus 136 ~~l~~-~~~~~~l~~i~~~LkpGG 158 (247)
T PRK15451 136 QFLEP-SERQALLDKIYQGLNPGG 158 (247)
T ss_pred HhCCH-HHHHHHHHHHHHhcCCCC
Confidence 77654 345679999999999999
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.25 E-value=1.8e-11 Score=111.60 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=69.9
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHcC--CCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALRG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+||||||+|.++..+++.+ ..++++ |.+..+.+.+..+. .+.++.++.+.+||++++||+|++..++++..+
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~- 113 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFPQAEFIAL--DISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD- 113 (240)
T ss_pred eEEEECCCccHHHHHHHHhCCCCcEEEE--eChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC-
Confidence 46999999999999999875 445554 44455655555442 356788899999999999999999999965433
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|||||
T Consensus 114 --~~~~l~~~~~~L~~~G 129 (240)
T TIGR02072 114 --LSQALSELARVLKPGG 129 (240)
T ss_pred --HHHHHHHHHHHcCCCc
Confidence 4579999999999999
No 29
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.24 E-value=1.6e-11 Score=100.14 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred EEEEcCcccHHHHHHhh--cCCeEEEeccCCChhHHHHHHHc-------CCCcEEeccC-CCCCCCCCccceeEEcc-hh
Q 017839 225 GIDVGGATGSFAARMKL--YNITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQ-QRLPLFDGVLDVVRCGH-AV 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~a-e~LPF~D~SFDlV~s~~-~L 293 (365)
+||||||+|.++..+++ .+.+|++++ +++.+.+.+.++ ..+.++.+++ ....+ .+.||+|++.. ++
T Consensus 5 vLDlGcG~G~~~~~l~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 5 VLDLGCGTGRLSIALARLFPGARVVGVD--ISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTL 81 (112)
T ss_dssp EEEETTTTSHHHHHHHHHHTTSEEEEEE--SSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSG
T ss_pred EEEEcCcCCHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCcc
Confidence 49999999999999999 688888755 456676655432 2367888888 33443 44599999999 56
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++.+.+..+.++.++.+.|||||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG 105 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGG 105 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCc
Confidence 555543456789999999999999
No 30
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.24 E-value=2.4e-11 Score=116.12 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=64.5
Q ss_pred eEEEEcCcccHHHHHHhhcC-----CeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYN-----ITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-----v~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..+++.. ..+++ +|++..+.+.++++. .+.+.++++.++||++++||+|++.++
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~~~~~v~g--iD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----- 160 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEITTMQLFG--LDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----- 160 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccccCCeEEE--ECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----
Confidence 35999999999999987652 34565 566677877776553 367888999999999999999998653
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+ ..+.|++|||||||
T Consensus 161 ~-----~~~~e~~rvLkpgG 175 (272)
T PRK11088 161 P-----CKAEELARVVKPGG 175 (272)
T ss_pred C-----CCHHHHHhhccCCC
Confidence 1 23579999999999
No 31
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.24 E-value=5e-11 Score=109.50 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=81.4
Q ss_pred EEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
+||||||+|.++..+++. +.+++++++ +..+.+.+.+ .| .+.+..++..+.|++ ++||+|++..+++|
T Consensus 3 vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 599999999999999876 367776554 4555554433 23 356777887777875 48999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------C-c---chh-----------hhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------K-A---SDL-----------ENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~-~---~~l-----------~~~~~~~l~~~gfk~i~w~ 341 (365)
+.+ ...++.++.|+||||| . . ... ...|..++++.||+.+...
T Consensus 80 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 80 IKD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 754 3579999999999999 1 0 000 1236788999999887655
No 32
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.24 E-value=4.5e-11 Score=110.62 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=70.3
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.|||||||+|.++..|++. +..+++ +|++..+.+.+.++ ..+.+..+++.. ||++++||+|++..+++|+. ++
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~~~~v~g--iDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p~ 121 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLPFKHIYG--VEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-PD 121 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEE--EECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-HH
Confidence 3599999999999999886 567776 45567787777653 235678888777 99999999999999999875 44
Q ss_pred hHHHHHHHHHhhhC
Q 017839 301 MMEFLFYDVDRVLR 314 (365)
Q Consensus 301 ~le~aL~Ei~RVLR 314 (365)
.+..++.|++|+++
T Consensus 122 ~~~~~l~el~r~~~ 135 (204)
T TIGR03587 122 NLPTAYRELYRCSN 135 (204)
T ss_pred HHHHHHHHHHhhcC
Confidence 57789999999984
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.24 E-value=2.7e-11 Score=110.73 Aligned_cols=89 Identities=11% Similarity=0.026 Sum_probs=67.1
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+||+|||+|.++..++++|..|++++ ++..+.+.+. ..++ +.+..++....+++ ++||+|+++.+++++. .
T Consensus 34 vLDiGcG~G~~a~~la~~g~~V~~iD--~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~-~ 109 (195)
T TIGR00477 34 TLDLGCGQGRNSLYLSLAGYDVRAWD--HNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ-A 109 (195)
T ss_pred EEEeCCCCCHHHHHHHHCCCeEEEEE--CCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC-H
Confidence 59999999999999999998887754 4455655432 2343 34555566666764 6899999999986654 3
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
+.....+.+++|+|||||
T Consensus 110 ~~~~~~l~~~~~~LkpgG 127 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGG 127 (195)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 456689999999999999
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.23 E-value=5.5e-11 Score=114.76 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=68.2
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH----HHcCC-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA----ALRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a----~~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+||||||+|.++..++++|..|++++ .+..+.+.+ ...++ +.+...+....++ +++||+|++..++++.. .
T Consensus 124 vLDlGcG~G~~~~~la~~g~~V~avD--~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~-~ 199 (287)
T PRK12335 124 ALDLGCGQGRNSLYLALLGFDVTAVD--INQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN-R 199 (287)
T ss_pred EEEeCCCCCHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC-H
Confidence 49999999999999999998887654 445555443 33343 4455566666665 78999999999997654 4
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
+....++.++.|+|||||
T Consensus 200 ~~~~~~l~~~~~~LkpgG 217 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGG 217 (287)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 456789999999999999
No 35
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.23 E-value=4e-11 Score=112.00 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=69.4
Q ss_pred eEEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..++++ +..+++ +|++..|.+.+.++ + .+.++.++...+|+++ +|+|++.++
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~~~p~~~v~g--vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~ 131 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFT 131 (239)
T ss_pred EEEEecCCCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecc
Confidence 4599999999999988874 567776 45556777666443 2 2578888999998864 899999999
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++. +.+...++.+++|+|||||
T Consensus 132 l~~~~-~~~~~~~l~~i~~~LkpgG 155 (239)
T TIGR00740 132 LQFLP-PEDRIALLTKIYEGLNPNG 155 (239)
T ss_pred hhhCC-HHHHHHHHHHHHHhcCCCe
Confidence 97654 3345689999999999999
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.23 E-value=4.1e-11 Score=122.64 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=85.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-C---CCcEEeccCC--CCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-G---LVPLHVPLQQ--RLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-g---~v~~~~g~ae--~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..|++++..|+++ |++..+.+.+.+. + .+.++.+++. .+||++++||+|+|..+++|+.
T Consensus 40 ~vLDlGcG~G~~~~~la~~~~~v~gi--D~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~ 117 (475)
T PLN02336 40 SVLELGAGIGRFTGELAKKAGQVIAL--DFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLS 117 (475)
T ss_pred EEEEeCCCcCHHHHHHHhhCCEEEEE--eCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCC
Confidence 46999999999999999987777764 4556666554432 1 2567777764 6899999999999999998775
Q ss_pred ChhhHHHHHHHHHhhhCCCC----------Ccch-----------hhhhHHHHHHhhCCceeeEE
Q 017839 298 PVIMMEFLFYDVDRVLRGGG----------KASD-----------LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG----------~~~~-----------l~~~~~~~l~~~gfk~i~w~ 341 (365)
+ +....++.+++|+||||| ...+ ....|.+++.+.||......
T Consensus 118 ~-~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 118 D-KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred H-HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 4 346689999999999999 1111 12357889999998766433
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.22 E-value=5.6e-11 Score=111.77 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=68.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.+||||||+|.++..++++ +..|+++ |++..+.+.+.++- .+.++.++++.++ ++++||+|+++.+++ |.++
T Consensus 34 ~vLDiGcG~G~~~~~la~~~~~~~v~gv--D~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~-~~~d- 108 (258)
T PRK01683 34 YVVDLGCGPGNSTELLVERWPAARITGI--DSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ-WLPD- 108 (258)
T ss_pred EEEEEcccCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh-hCCC-
Confidence 4599999999999999876 4677764 45567777665542 3567888887775 567999999999995 5543
Q ss_pred hHHHHHHHHHhhhCCCC
Q 017839 301 MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|||||
T Consensus 109 -~~~~l~~~~~~LkpgG 124 (258)
T PRK01683 109 -HLELFPRLVSLLAPGG 124 (258)
T ss_pred -HHHHHHHHHHhcCCCc
Confidence 3579999999999999
No 38
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.21 E-value=3.7e-11 Score=115.30 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCceEEEEcCcccH----HHHHHhhc-------CCeEEEeccCCChhHHHHHHHc-------------------------
Q 017839 221 VIRLGIDVGGATGS----FAARMKLY-------NITILTTTMNLGAPYSEAAALR------------------------- 264 (365)
Q Consensus 221 ~iRi~LDIGCGtG~----faa~Lae~-------gv~Vv~~~ldl~~~~~e~a~~R------------------------- 264 (365)
.+|| +|+|||||. +|..+++. ++.|+++++ +..+.+.|.+.
T Consensus 100 ~~ri-~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di--s~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 100 RVRI-WSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI--DLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CEEE-EeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC--CHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 4665 999999995 66666653 356776554 46677665431
Q ss_pred --------CCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 265 --------GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 265 --------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+.|.+++....|++++.||+|+|..+++++.+ +..+.++.+++|+|||||
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCe
Confidence 1356777888888888999999999999987753 446689999999999999
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.19 E-value=3.6e-11 Score=104.66 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=69.7
Q ss_pred CceEEEEcCcccHHHHHHhh-c--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCC--CCCCccceeEEc
Q 017839 222 IRLGIDVGGATGSFAARMKL-Y--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLP--LFDGVLDVVRCG 290 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae-~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LP--F~D~SFDlV~s~ 290 (365)
.+ +||+|||+|.++..|++ . +..+++++ +++.+.+.+.. .+. +.+..++.++++ |. +.||+|++.
T Consensus 5 ~~-iLDlGcG~G~~~~~l~~~~~~~~~i~gvD--~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 5 KK-ILDLGCGTGRLLIQLAKELNPGAKIIGVD--ISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp SE-EEEET-TTSHHHHHHHHHSTTTSEEEEEE--SSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CE-EEEecCcCcHHHHHHHHhcCCCCEEEEEE--CcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 44 49999999999999994 3 57777754 55777776654 233 678889988888 77 999999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++++..+ .+.+++++.|+||+||
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGG 104 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEE
T ss_pred CchhhccC---HHHHHHHHHHHcCCCc
Confidence 99965543 3479999999999999
No 40
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.18 E-value=3.9e-10 Score=103.12 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=69.3
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++.+ ..++++++ +..+.+.+.++ ..+.+..++...+++.+++||+|++++++
T Consensus 54 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 54 KVLDLACGTGDLAIALAKAVGKTGEVVGLDF--SEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 35999999999999998764 66776544 45555544432 23567778888899989999999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++.+ ....+.++.++|+|||
T Consensus 132 ~~~~~---~~~~l~~~~~~L~~gG 152 (239)
T PRK00216 132 RNVPD---IDKALREMYRVLKPGG 152 (239)
T ss_pred ccCCC---HHHHHHHHHHhccCCc
Confidence 77654 3478999999999999
No 41
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.17 E-value=2.7e-10 Score=111.87 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=84.3
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc---CC-Cc-EEec-cCCCCCCCCCccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR---GL-VP-LHVP-LQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R---g~-v~-~~~g-~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
|.|||||||.|.++-+|+++|+ .|+|++.+. .-..|+...+ |. .. +... ..+.||. .++||+|+|..||+|
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~-lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP-LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCCh-HHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 4569999999999999999986 577754431 1123332211 21 22 3332 5789998 899999999999999
Q ss_pred ccChhhHHHHHHHHHhhhCCCC---------Ccch------------h--------hhhHHHHHHhhCCceeeEEeecCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG---------KASD------------L--------ENVYGPLIGKLGYKKVKWATANKP 346 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG---------~~~~------------l--------~~~~~~~l~~~gfk~i~w~v~~K~ 346 (365)
.-++ -.+|.++...||||| .+++ . ...+.++++++||+.++.+-..+.
T Consensus 195 rr~P---l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 195 RRSP---LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPT 271 (315)
T ss_pred cCCH---HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccC
Confidence 7754 258999999999999 1110 0 123578999999999987755554
Q ss_pred C
Q 017839 347 N 347 (365)
Q Consensus 347 d 347 (365)
+
T Consensus 272 t 272 (315)
T PF08003_consen 272 T 272 (315)
T ss_pred C
Confidence 4
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.17 E-value=1.3e-10 Score=112.53 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=63.7
Q ss_pred CCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHH----HHcCC---CcEEeccCCCCCCCCCccceeEEcc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAA----ALRGL---VPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a----~~Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
|. | |||||||-|.++.+++++ |++|++++++ ..+.+.+ .++|+ +.+...+-.+++. +||.|+|-.
T Consensus 63 G~-~-vLDiGcGwG~~~~~~a~~~g~~v~gitlS--~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 63 GD-R-VLDIGCGWGGLAIYAAERYGCHVTGITLS--EEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp T--E-EEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CC-E-EEEeCCCccHHHHHHHHHcCcEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 53 4 599999999999999998 9999887654 4454443 34554 5567677666655 999999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++|... ......++.++|+|||||
T Consensus 136 ~~Ehvg~-~~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 136 MFEHVGR-KNYPAFFRKISRLLKPGG 160 (273)
T ss_dssp EGGGTCG-GGHHHHHHHHHHHSETTE
T ss_pred chhhcCh-hHHHHHHHHHHHhcCCCc
Confidence 9999864 356689999999999999
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.14 E-value=1.5e-11 Score=99.21 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=48.1
Q ss_pred EEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCC-CC-CCCccceeEEcchhhc
Q 017839 226 IDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRL-PL-FDGVLDVVRCGHAVNR 295 (365)
Q Consensus 226 LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~L-PF-~D~SFDlV~s~~~L~~ 295 (365)
||||||+|.++..+.++ +.++++++++ +.|.+.++ ..+. ..........+ .+ ..++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDIS--PSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESS--SSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999987 5666665444 44543222 2221 11222222222 11 2369999999999987
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. +++.+++.++++|||||
T Consensus 79 l~---~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 79 LE---DIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-
T ss_pred hh---hHHHHHHHHHHHcCCCC
Confidence 73 35689999999999999
No 44
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=4.7e-10 Score=104.12 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=80.8
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC--------CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP--------LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP--------F~D~SFDlV~s~~~ 292 (365)
.+||||||||.++..++++. ..|++++++ . +.. ..+ +.++.+++...+ +.+++||+|+|..+
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~--~-~~~---~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL--P-MDP---IVG-VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcCCCceEEEEecc--c-ccC---CCC-cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 46999999999999998863 467765543 2 211 122 567888887753 78899999999876
Q ss_pred hhcccChh---------hHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhh--CCceeeEEeecCCCC-CCCce
Q 017839 293 VNRWIPVI---------MMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKL--GYKKVKWATANKPNS-KNGEV 353 (365)
Q Consensus 293 L~~w~d~~---------~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~--gfk~i~w~v~~K~d~-~~~~~ 353 (365)
.+ |.... ..+.+|.++.|+||||| ..++ +.++++.+ +|+.+++. -.+..+ ...|.
T Consensus 127 ~~-~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~----~~~~l~~l~~~f~~v~~~-Kp~ssr~~s~e~ 200 (209)
T PRK11188 127 PN-MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG----FDEYLREIRSLFTKVKVR-KPDSSRARSREV 200 (209)
T ss_pred Cc-cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC----HHHHHHHHHhCceEEEEE-CCccccccCcee
Confidence 53 33211 12468999999999999 2222 33455554 68877653 222222 57899
Q ss_pred EEEEe
Q 017839 354 YLTAL 358 (365)
Q Consensus 354 y~sal 358 (365)
|+-++
T Consensus 201 ~~~~~ 205 (209)
T PRK11188 201 YIVAT 205 (209)
T ss_pred EEEee
Confidence 98654
No 45
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.14 E-value=1.3e-10 Score=107.35 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=68.9
Q ss_pred CceEEEEcCcccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccC-CCCC-CCCCccceeEEcchhhcccC
Q 017839 222 IRLGIDVGGATGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQ-QRLP-LFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~a-e~LP-F~D~SFDlV~s~~~L~~w~d 298 (365)
.|+ ||+|||.|.+.++|.+ +++.+.|+++| ......+.++|+ +++++|+ +.|+ |+|++||.|+.+.+|++...
T Consensus 15 srV-LDLGCGdG~LL~~L~~~k~v~g~GvEid--~~~v~~cv~rGv-~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 15 SRV-LDLGCGDGELLAYLKDEKQVDGYGVEID--PDNVAACVARGV-SVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred CEE-EecCCCchHHHHHHHHhcCCeEEEEecC--HHHHHHHHHcCC-CEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 354 9999999999999987 57888876655 444555667775 6888875 4575 99999999999999988764
Q ss_pred hhhHHHHHHHHHhhhCC
Q 017839 299 VIMMEFLFYDVDRVLRG 315 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRP 315 (365)
++.+|.||.||-|-
T Consensus 91 ---P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 91 ---PDEVLEEMLRVGRR 104 (193)
T ss_pred ---HHHHHHHHHHhcCe
Confidence 45799999999654
No 46
>PRK06202 hypothetical protein; Provisional
Probab=99.14 E-value=1.4e-10 Score=107.90 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=68.6
Q ss_pred eEEEEcCcccHHHHHHhh----cC--CeEEEeccCCChhHHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKL----YN--ITILTTTMNLGAPYSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae----~g--v~Vv~~~ldl~~~~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..|++ .| ..+++ +|++..|.+.+.++. .+.+...++..+++.+++||+|+|+.+++
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTA--IDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEE--EcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 359999999999888864 24 46776 556677877766542 24667777888999899999999999998
Q ss_pred cccChhhHHHHHHHHHhhhC
Q 017839 295 RWIPVIMMEFLFYDVDRVLR 314 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLR 314 (365)
|..++ .+..+++|+.|++|
T Consensus 141 h~~d~-~~~~~l~~~~r~~~ 159 (232)
T PRK06202 141 HLDDA-EVVRLLADSAALAR 159 (232)
T ss_pred cCChH-HHHHHHHHHHHhcC
Confidence 87653 35679999999998
No 47
>PRK06922 hypothetical protein; Provisional
Probab=99.14 E-value=1.1e-10 Score=124.35 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=71.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCC--CCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLP--LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LP--F~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..++++ +..++++ |++..|.+.+.++ + .+.++.+++..+| |++++||+|+++.+++
T Consensus 421 rVLDIGCGTG~ls~~LA~~~P~~kVtGI--DIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 421 TIVDVGAGGGVMLDMIEEETEDKRIYGI--DISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 3599999999999888875 4677764 5556777665543 2 2456778888898 8999999999999998
Q ss_pred cccC----------hhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIP----------VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d----------~~~le~aL~Ei~RVLRPGG 317 (365)
+|.+ ...+..+|++++|+|||||
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGG 531 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGG 531 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCc
Confidence 7631 2356789999999999999
No 48
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.12 E-value=5.3e-10 Score=108.39 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=66.3
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
+.+||||||+|.++..++++. .+++.. |. ..+.+.+ .+.| .+.++.++....++++ +|+|++++++
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l 225 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTIL--NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL 225 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEE--ec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence 356999999999999999874 566543 43 3444433 2333 3667888877667764 6999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++|.++ ....++++++|+|||||
T Consensus 226 h~~~~~-~~~~il~~~~~~L~pgG 248 (306)
T TIGR02716 226 YSANEQ-LSTIMCKKAFDAMRSGG 248 (306)
T ss_pred hcCChH-HHHHHHHHHHHhcCCCC
Confidence 988754 34578999999999999
No 49
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.12 E-value=2.9e-10 Score=104.73 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=69.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..+++.+..+++++ ++..+.+.+.++ + .+.+..++++.++ ++||+|++..+++|+
T Consensus 58 ~vLDiGcG~G~~~~~la~~~~~v~gvD--~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 58 RVLDAGCGTGLLSIELAKRGAIVKAVD--ISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHY 132 (219)
T ss_pred EEEEEeCCCCHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhC
Confidence 459999999999999998888887654 456676655443 2 3567778887776 899999999999887
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ ..++.++.++.|++++|+
T Consensus 133 ~~-~~~~~~l~~i~~~~~~~~ 152 (219)
T TIGR02021 133 PA-SDMAKALGHLASLTKERV 152 (219)
T ss_pred CH-HHHHHHHHHHHHHhCCCE
Confidence 54 446789999999999877
No 50
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.11 E-value=1.3e-10 Score=110.57 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=68.8
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCC-----CcEEeccCCCCCCC--CCccceeEEcchhh
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGL-----VPLHVPLQQRLPLF--DGVLDVVRCGHAVN 294 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~-----v~~~~g~ae~LPF~--D~SFDlV~s~~~L~ 294 (365)
-|+++|||||+|.-+..++++.-.|++++ .+..|.+.+.+.-. .+...++.+-.++- ++|.|+|+|..|+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD--~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~- 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATD--VSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV- 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeec--CCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH-
Confidence 36789999999966666677766777654 45788887765422 33444445556666 9999999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
||.+ ++.++++++||||+.|
T Consensus 111 HWFd---le~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 111 HWFD---LERFYKEAYRVLRKDG 130 (261)
T ss_pred Hhhc---hHHHHHHHHHHcCCCC
Confidence 8986 5589999999999988
No 51
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.10 E-value=5.1e-10 Score=105.70 Aligned_cols=122 Identities=22% Similarity=0.271 Sum_probs=87.2
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCC-cEEecc-CCCCCCCCCccceeEEcchhhccc--
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLV-PLHVPL-QQRLPLFDGVLDVVRCGHAVNRWI-- 297 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v-~~~~g~-ae~LPF~D~SFDlV~s~~~L~~w~-- 297 (365)
-+.+||||||+|--+..|.+.|...++ +|++.+|.+.+.++.+- .+..++ ++.|||..++||.|++-.++ +|.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiG--vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv-QWLcn 127 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIG--VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV-QWLCN 127 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEe--ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-eeecc
Confidence 356799999999999999999977776 56678899888765332 455554 68999999999999998887 564
Q ss_pred -------ChhhHHHHHHHHHhhhCCCC-----Ccchhhh---hHHHHHHhhCCc---eeeEEeecCC
Q 017839 298 -------PVIMMEFLFYDVDRVLRGGG-----KASDLEN---VYGPLIGKLGYK---KVKWATANKP 346 (365)
Q Consensus 298 -------d~~~le~aL~Ei~RVLRPGG-----~~~~l~~---~~~~~l~~~gfk---~i~w~v~~K~ 346 (365)
+..-+..++.-++.+|++|+ ..++.++ ....-..+.||. .+.|-.++|.
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~ 194 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKN 194 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeeccccccc
Confidence 22334456777999999999 2333322 244444567773 4677655553
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.09 E-value=1.8e-10 Score=106.03 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=74.9
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC--CCcEEeccC-CCCC--CCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQ-QRLP--LFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~a-e~LP--F~D~SFDlV~s~~ 291 (365)
.++||||||+|.++..+++. +..+++++ ++..+.+.+.+ .+ .+.++.+++ +.++ |++++||+|++.+
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD--~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIE--VHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEE--echHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 34699999999999999876 35677654 44566655543 23 356788888 8888 8899999999976
Q ss_pred hhhcccCh------hhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCc
Q 017839 292 AVNRWIPV------IMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 292 ~L~~w~d~------~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk 336 (365)
.. .|... ...+.++.+++|+||||| ......+...+.++..|++
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF 175 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc
Confidence 54 34321 012468999999999999 2222222244555666653
No 53
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.09 E-value=1.2e-09 Score=101.42 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=87.1
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc--C--CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR--G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R--g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
+.++.+||+|||.|.|+..|+.+.-.+++ +|+++...+.+++| + .|.+.+++..+. .+++.||+|+++.+++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~Lla--vDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLA--VDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEE--EES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEE--EeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 56778899999999999999999755554 45556666666655 2 366777765443 57999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------Ccch---------hhhhHHHHHHhhCCceeeEE-eecCCCCCCCceEEEEee
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASD---------LENVYGPLIGKLGYKKVKWA-TANKPNSKNGEVYLTALL 359 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~---------l~~~~~~~l~~~gfk~i~w~-v~~K~d~~~~~~y~sall 359 (365)
+.+.++++.++..+.+.|+||| ..++ =.++...|+.+. +.++.-. ..... .+|=-+-|-+
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~ 194 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGGS---PNEDCLLARF 194 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SS---TTSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCCC---CCCceEeeee
Confidence 8776678889999999999999 1111 122344555543 3333222 22222 3556677999
Q ss_pred ecCCC
Q 017839 360 QKPVS 364 (365)
Q Consensus 360 ~KP~~ 364 (365)
+||++
T Consensus 195 ~~~~~ 199 (201)
T PF05401_consen 195 RNPVS 199 (201)
T ss_dssp E--SS
T ss_pred cCCcC
Confidence 99987
No 54
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=1.9e-10 Score=107.62 Aligned_cols=88 Identities=25% Similarity=0.254 Sum_probs=67.8
Q ss_pred EEEEcCcccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHc---C---CCc-EEeccCCCCC-CCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKL-YNITILTTTMNLGAPYSEAAALR---G---LVP-LHVPLQQRLP-LFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~R---g---~v~-~~~g~ae~LP-F~D~SFDlV~s~~~L~~ 295 (365)
+|+||||||..-..+-- .+.+|+. +|.++.|.+++.++ . .+. |+.+++++|| .+|+|+|.|+|..+|.-
T Consensus 80 vLEvgcGtG~Nfkfy~~~p~~svt~--lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 80 VLEVGCGTGANFKFYPWKPINSVTC--LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred eEEecccCCCCcccccCCCCceEEE--eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 49999999997766653 4666664 56667777665332 1 133 7889999999 89999999999999965
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+ ....|+|+.|+|||||
T Consensus 158 ve~---~~k~L~e~~rlLRpgG 176 (252)
T KOG4300|consen 158 VED---PVKQLNEVRRLLRPGG 176 (252)
T ss_pred cCC---HHHHHHHHHHhcCCCc
Confidence 443 4589999999999999
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.05 E-value=1.3e-09 Score=99.96 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=66.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..|++.+..++++ |++..+.+.+.++ + .+.+..++ +++.+++||+|++..+++||
T Consensus 66 ~vLDvGcG~G~~~~~l~~~~~~v~~~--D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARRGAKVVAS--DISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred EEEEEeCCCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcC
Confidence 45999999999999999888777764 4556676655432 2 35566655 66678999999999999887
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++ ....++.++.|++++|+
T Consensus 141 ~~~-~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 141 PQE-DAARMLAHLASLTRGSL 160 (230)
T ss_pred CHH-HHHHHHHHHHhhcCCeE
Confidence 654 46778999999886655
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.05 E-value=2.5e-09 Score=95.81 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=74.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+||+|||+|.++..+++++.+++++++ +..+.+.+.+ .+. +.++.++....+ +++||+|+++-.+++..+.
T Consensus 23 vLdlG~G~G~~~~~l~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~ 98 (179)
T TIGR00537 23 VLEIGAGTGLVAIRLKGKGKCILTTDI--NPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDD 98 (179)
T ss_pred EEEeCCChhHHHHHHHhcCCEEEEEEC--CHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcch
Confidence 599999999999999998877776554 4556554433 222 455666665543 4699999998766544321
Q ss_pred ------------------hhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCcee
Q 017839 300 ------------------IMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 300 ------------------~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i 338 (365)
...+..+.++.|+||||| ....-...+...+++.||...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 99 LRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred hcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 114567999999999999 111112236678888898654
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.04 E-value=7.3e-10 Score=111.83 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=67.2
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcC--C-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRG--L-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg--~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+||||||+|.++..++++ |++|+++ |++..+.+.+.++. . +.+..++...+ +++||+|++..+++|..+
T Consensus 170 rVLDIGcG~G~~a~~la~~~g~~V~gi--DlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~- 243 (383)
T PRK11705 170 RVLDIGCGWGGLARYAAEHYGVSVVGV--TISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGP- 243 (383)
T ss_pred EEEEeCCCccHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCCh-
Confidence 3599999999999999875 7788764 45567777665542 2 44555665554 579999999999977643
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
...+.++.++.|+|||||
T Consensus 244 ~~~~~~l~~i~r~LkpGG 261 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDG 261 (383)
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 345679999999999999
No 58
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.02 E-value=5.3e-10 Score=99.31 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=54.0
Q ss_pred ccCCChhHHHHHHHc----C-----CCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 250 TMNLGAPYSEAAALR----G-----LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 250 ~ldl~~~~~e~a~~R----g-----~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++|++..|.+.+.++ + .+.+++++++++||++++||+|++.++++++.+ ...+++|++|||||||
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGS 75 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCe
Confidence 356778888776433 1 267899999999999999999999999988764 3479999999999999
No 59
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.00 E-value=3.3e-09 Score=100.55 Aligned_cols=118 Identities=23% Similarity=0.227 Sum_probs=74.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||+|.++..+++.|.. |++++ ++..+.+.+.++ ++ . +.-.++..+.+||+|+++...+
T Consensus 122 ~VLDiGcGsG~l~i~~~~~g~~~v~giD--is~~~l~~A~~n~~~~~~-~----~~~~~~~~~~~fD~Vvani~~~---- 190 (250)
T PRK00517 122 TVLDVGCGSGILAIAAAKLGAKKVLAVD--IDPQAVEAARENAELNGV-E----LNVYLPQGDLKADVIVANILAN---- 190 (250)
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEEE--CCHHHHHHHHHHHHHcCC-C----ceEEEccCCCCcCEEEEcCcHH----
Confidence 4599999999999888887754 76654 445565554432 22 1 1112333344899999875432
Q ss_pred hhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecC
Q 017839 299 VIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP 362 (365)
.+...+.++.|+||||| ...+..+.....+++.||+.++-.. .++| .+.+++|+
T Consensus 191 --~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~-------~~~W-~~~~~~~~ 250 (250)
T PRK00517 191 --PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE-------RGEW-VALVGKKK 250 (250)
T ss_pred --HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE-------eCCE-EEEEEEeC
Confidence 23467899999999999 1222223366788899998764221 2333 44666664
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.00 E-value=1.5e-09 Score=98.80 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=69.9
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..++..+ ..|+++ |.+..+.+++. +.+. +.++.++++.++ .+++||+|+|.. +.+
T Consensus 45 ~vLDiGcGtG~~s~~la~~~~~~~V~~i--D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 45 KVIDIGSGAGFPGIPLAIARPELKLTLL--ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS 120 (181)
T ss_pred eEEEecCCCCccHHHHHHHCCCCeEEEE--eCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC
Confidence 45999999999999887653 566664 44455554432 2343 567888888875 478999999865 322
Q ss_pred ccChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHh---hCCcee
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGK---LGYKKV 338 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~---~gfk~i 338 (365)
++..+.+++|+||||| .+......+..+.++ .|++.+
T Consensus 121 ------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 121 ------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 2357788999999999 332222234445566 566555
No 61
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.99 E-value=7e-10 Score=101.25 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=64.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCC---CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLP---LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LP---F~D~SFDlV~s~~~ 292 (365)
++||||||+|.++..++++ +..++++++ +..+.+.+.+ .+ .+.++.+++..++ +++++||.|++.+.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~gvD~--~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLGIEI--HTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEEEEe--eHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 4699999999999999987 356776544 4555544432 23 3567888887664 66789999998765
Q ss_pred hhcccChh------hHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
. +|.... ..+..+.++.|+|||||
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG 126 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGG 126 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCC
Confidence 3 554321 01358999999999999
No 62
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.99 E-value=1.3e-09 Score=98.57 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred eEEEEcCcccHHHHHHhhcCC---eEEEeccCCChhHHHHHHHcC----CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI---TILTTTMNLGAPYSEAAALRG----LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv---~Vv~~~ldl~~~~~e~a~~Rg----~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..+++.+. .++++ |++..+.+.+.++. .+.++.+++..+|+++++||+|+++.++++.
T Consensus 42 ~vldiG~G~G~~~~~~~~~~~~~~~~~~i--D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 42 KVLDVACGTGDLAIELAKSAPDRGKVTGV--DFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred eEEEeCCCCChhHHHHHHhcCCCceEEEE--ECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 459999999999999987642 56654 44455555554432 3677888888999999999999999998765
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ +..+++++.++|||||
T Consensus 120 ~~---~~~~l~~~~~~L~~gG 137 (223)
T TIGR01934 120 TD---IQKALREMYRVLKPGG 137 (223)
T ss_pred cc---HHHHHHHHHHHcCCCc
Confidence 53 4579999999999999
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.99 E-value=2.3e-09 Score=100.14 Aligned_cols=90 Identities=16% Similarity=-0.065 Sum_probs=69.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH-HHcC-----------------CCcEEeccCCCCCCC-CCccc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA-ALRG-----------------LVPLHVPLQQRLPLF-DGVLD 285 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a-~~Rg-----------------~v~~~~g~ae~LPF~-D~SFD 285 (365)
+||+|||.|..+..|+++|..|++++ ++....+.+ .+.+ .+.++++|...++.. ...||
T Consensus 38 vLd~GCG~G~da~~LA~~G~~V~gvD--~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 38 VFVPLCGKSLDLAWLAEQGHRVLGVE--LSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred EEEeCCCchhHHHHHHhCCCeEEEEe--CCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 49999999999999999999998754 445555443 2222 256788888777643 46799
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.|+-..+++|.. .+..+..+..+.|+|||||
T Consensus 116 ~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG 146 (213)
T TIGR03840 116 AVYDRAALIALP-EEMRQRYAAHLLALLPPGA 146 (213)
T ss_pred EEEechhhccCC-HHHHHHHHHHHHHHcCCCC
Confidence 999888887765 4456779999999999999
No 64
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.97 E-value=8.2e-09 Score=94.76 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=74.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..++.+ +.+|++++ .+..+.+.+. ..+. +.++.++++.+++ +++||+|++...
T Consensus 48 ~VLDiGcGtG~~al~la~~~~~~~V~giD--~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~--- 121 (187)
T PRK00107 48 RVLDVGSGAGFPGIPLAIARPELKVTLVD--SLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV--- 121 (187)
T ss_pred eEEEEcCCCCHHHHHHHHHCCCCeEEEEe--CcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---
Confidence 3599999999999988763 56777654 4455554443 3343 6778888888887 889999999652
Q ss_pred ccChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
. .++.++.+++|+||||| ...........+.+.+|+...+..
T Consensus 122 -~---~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 -A---SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -c---CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeE
Confidence 1 24468899999999999 222222334556777887754443
No 65
>PRK04266 fibrillarin; Provisional
Probab=98.97 E-value=6.5e-09 Score=98.09 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=73.0
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHH----HHHHcCCCcEEeccCCC----CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSE----AAALRGLVPLHVPLQQR----LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e----~a~~Rg~v~~~~g~ae~----LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..+++.. .+|++. |.+..|.+ .+.++..+.++.+++.. .++ +++||+|++...
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~av--D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~- 150 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAV--EFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDVA- 150 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEE--ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECCC-
Confidence 35999999999999998862 466664 55555554 23333345667777654 223 356999986432
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC---C------cc------hhhhhHHHHHHhhCCceeeEEeec
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG---K------AS------DLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG---~------~~------~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
++.....++.|+.|+||||| . .+ ..-+....+++..||+.+.+....
T Consensus 151 ----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 151 ----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred ----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 11122457899999999999 1 11 011123478889999999887543
No 66
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.95 E-value=6.9e-09 Score=93.76 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC--------CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP--------LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP--------F~D~SFDlV~s~~~ 292 (365)
.+||+|||||.++..++++. ..+++++++ +.+ ...+ +.++.++..+.+ +++++||+|++..+
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis--~~~----~~~~-i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ--PMK----PIEN-VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhCCCceEEEEecc--ccc----cCCC-ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 46999999999998887753 357765554 222 1122 456667765543 56889999998543
Q ss_pred h---hccc-----ChhhHHHHHHHHHhhhCCCC
Q 017839 293 V---NRWI-----PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L---~~w~-----d~~~le~aL~Ei~RVLRPGG 317 (365)
. .+|. ..+..+.++.++.|+|||||
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG 140 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKG 140 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCC
Confidence 1 1122 11223578999999999999
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=98.94 E-value=2.1e-08 Score=88.84 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=74.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC----CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++++..+++++. +..+.+.+++ .+. +.+..++... ++.+++||+|+++..+..
T Consensus 26 ~vLd~G~G~G~~~~~l~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 26 RVLEVGTGSGIVAIVAAKNGKKVVGVDI--NPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred EEEEEccccCHHHHHHHhhcceEEEEEC--CHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCC
Confidence 4599999999999999988888876554 4555554432 121 4566665433 456779999998754322
Q ss_pred cc-----------------C-hhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 296 WI-----------------P-VIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 296 w~-----------------d-~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
.. + ...++.++.++.|+||||| ..... +.+.+++++.||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE-DEVLEYLEKLGFEAE 169 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH-HHHHHHHHHCCCeee
Confidence 10 0 1224568999999999999 11222 346779999999765
No 68
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.94 E-value=6.6e-09 Score=96.40 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=81.8
Q ss_pred ccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCC
Q 017839 204 LDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQ 275 (365)
Q Consensus 204 ~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae 275 (365)
++..+..+++..+. ... .+||+|||+|.++..+++. +..++++++ +..+.+.+.+ .+. +.++.++..
T Consensus 73 ~~~l~~~~l~~~~~--~~~-~ilDig~G~G~~~~~l~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 73 TEELVEAALERLKK--GPL-RVLDLGTGSGAIALALAKERPDARVTAVDI--SPEALAVARKNAARLGLDNVTFLQSDWF 147 (251)
T ss_pred hHHHHHHHHHhccc--CCC-eEEEEeCcHhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 34455556554331 223 3599999999999999986 457776544 4555554432 232 567777765
Q ss_pred CCCCCCCccceeEEcchh------hcccCh-----------------hhHHHHHHHHHhhhCCCC-----CcchhhhhHH
Q 017839 276 RLPLFDGVLDVVRCGHAV------NRWIPV-----------------IMMEFLFYDVDRVLRGGG-----KASDLENVYG 327 (365)
Q Consensus 276 ~LPF~D~SFDlV~s~~~L------~~w~d~-----------------~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~ 327 (365)
. ++++++||+|+++--. +.+... ......+.++.|+||||| ......+.+.
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~ 226 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVR 226 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHH
Confidence 5 5678999999985321 111110 012357899999999999 2222223467
Q ss_pred HHHHhhCCceee
Q 017839 328 PLIGKLGYKKVK 339 (365)
Q Consensus 328 ~~l~~~gfk~i~ 339 (365)
.++++.||+.+.
T Consensus 227 ~~l~~~gf~~v~ 238 (251)
T TIGR03534 227 ALFEAAGFADVE 238 (251)
T ss_pred HHHHhCCCCceE
Confidence 788999998764
No 69
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=2.3e-09 Score=104.47 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=68.6
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHH----HHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSE----AAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e----~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||-|.++.+++++ |++|+|++++ +++.+ .++++|.-.-+.-..+..+..++.||-|+|..+++|...
T Consensus 75 ~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS--~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~ 152 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAEEYGVTVVGVTLS--EEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGK 152 (283)
T ss_pred EEEEeCCChhHHHHHHHHHcCCEEEEeeCC--HHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHHhCc
Confidence 3599999999999999997 7999987765 44443 345566531111123556666667999999999999875
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
. .....++-++++|+|||
T Consensus 153 ~-~~~~ff~~~~~~L~~~G 170 (283)
T COG2230 153 E-NYDDFFKKVYALLKPGG 170 (283)
T ss_pred c-cHHHHHHHHHhhcCCCc
Confidence 3 45679999999999999
No 70
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.92 E-value=9.5e-09 Score=101.17 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=76.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchh--hc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAV--NR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L--~~ 295 (365)
.+||+|||||+++..++..+..+++.++| ..|.+.+.+ .|. +.+..+++.++|+.+++||+|++.--. ..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~~v~g~Di~--~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGAKVIGCDID--WKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRST 262 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCCeEEEEcCC--HHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcc
Confidence 46999999999998888778888876554 555443322 233 467788999999999999999996211 00
Q ss_pred cc----ChhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCCcee
Q 017839 296 WI----PVIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 296 w~----d~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gfk~i 338 (365)
.. .......++.++.|+||||| ...... .+..+++..|| .+
T Consensus 263 ~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 263 TAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-DLESLAEDAFR-VV 311 (329)
T ss_pred cccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-CHHHHHhhcCc-ch
Confidence 00 11224679999999999999 111111 24568899999 54
No 71
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.91 E-value=5.7e-09 Score=103.12 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=80.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-----------CCcEEeccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-----------LVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-----------~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..++++|..|+++ |++..|.+.+.++. .+.+..++.+. .+++||+|+|..+
T Consensus 147 ~VLDlGcGtG~~a~~la~~g~~V~gv--D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~~v 221 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALEGAIVSAS--DISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---LSGKYDTVTCLDV 221 (315)
T ss_pred EEEEecCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---cCCCcCEEEEcCE
Confidence 35999999999999999999888864 55577776665431 12345555443 3789999999999
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC-----Ccc--------h-----------------hhhhHHHHHHhhCCceeeEEe
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG-----KAS--------D-----------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG-----~~~--------~-----------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
++|+.++ .....+..+.+ +.+|| ... . -.+.+..+++..||+...-.+
T Consensus 222 L~H~p~~-~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREM 299 (315)
T ss_pred EEecCHH-HHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEE
Confidence 9887653 33445566655 45666 000 0 023466788999998653221
Q ss_pred ecCCCCCCCceEEEEeee
Q 017839 343 ANKPNSKNGEVYLTALLQ 360 (365)
Q Consensus 343 ~~K~d~~~~~~y~sall~ 360 (365)
. .+..|++.++|
T Consensus 300 ~------~~~~y~~~l~~ 311 (315)
T PLN02585 300 T------ATQFYFSRLLE 311 (315)
T ss_pred e------ecceeHHhhhh
Confidence 1 24567777665
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.91 E-value=6.8e-09 Score=93.58 Aligned_cols=108 Identities=17% Similarity=0.098 Sum_probs=72.4
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..+++++ ..|++++. +..+.+.+.+ .+ .+.++.+++. .++ ++.||+|++.....+
T Consensus 34 ~vLDiG~G~G~~~~~la~~~~~~~v~~vD~--s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 34 HLIDVGAGTGSVSIEAALQFPSLQVTAIER--NPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGGN 109 (187)
T ss_pred EEEEECCcCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCccC
Confidence 45999999999999998763 56776544 4555544432 22 2456666653 344 468999999765432
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
++..+.++.|+||||| ...+..+....++++.||+.+...
T Consensus 110 ------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 110 ------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred ------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 3357889999999999 111112336678999999776543
No 73
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.88 E-value=2.3e-09 Score=103.27 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=65.2
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCC------------CcEEeccCCCCCCCCCccceeEEc
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGL------------VPLHVPLQQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~------------v~~~~g~ae~LPF~D~SFDlV~s~ 290 (365)
+.+||||||+|-++..|++.|..|+| +|+++.+.+.|.+... +.+...+++.+- +.||+|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~G--ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTG--IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEe--ecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 33599999999999999999999886 5666777776655311 112223344432 239999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+++|..++ +..+.-+.+.|||||
T Consensus 166 evleHV~dp---~~~l~~l~~~lkP~G 189 (282)
T KOG1270|consen 166 EVLEHVKDP---QEFLNCLSALLKPNG 189 (282)
T ss_pred HHHHHHhCH---HHHHHHHHHHhCCCC
Confidence 999998754 468999999999999
No 74
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.87 E-value=6.8e-09 Score=105.29 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=66.6
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHH----HHcCC--CcEEeccCCCC--CCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAA----ALRGL--VPLHVPLQQRL--PLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a----~~Rg~--v~~~~g~ae~L--PF~D~SFDlV~s~~~L 293 (365)
++||||||+|.++..++++ +..++|++ +..++.+.+ ..+|+ +.++.+++..+ +|++++||.|++.+..
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iGIE--I~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIGIE--IHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEEEE--CCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 5699999999999999987 36777654 445554433 33443 56777888765 6889999999987653
Q ss_pred hcccChhh----HHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIM----MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~----le~aL~Ei~RVLRPGG 317 (365)
.|..... ....+.|+.|+|||||
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG 229 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGG 229 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCc
Confidence 5643211 1368999999999999
No 75
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=1.1e-08 Score=95.87 Aligned_cols=90 Identities=16% Similarity=-0.014 Sum_probs=69.0
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH-HHcCC-----------------CcEEeccCCCCCCCC-Cccc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA-ALRGL-----------------VPLHVPLQQRLPLFD-GVLD 285 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a-~~Rg~-----------------v~~~~g~ae~LPF~D-~SFD 285 (365)
+||+|||.|..+..|+++|..|++++++ ....+.+ .++++ +.++++|...++..+ ..||
T Consensus 41 vL~~gCG~G~da~~LA~~G~~V~avD~s--~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 41 VLVPLCGKSLDMLWLAEQGHEVLGVELS--ELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred EEEeCCCChHhHHHHHhCCCeEEEEccC--HHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 4999999999999999999999875544 4444433 33332 456778877775443 6899
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|+-..++++.. .+..+..+..+.++|||||
T Consensus 119 ~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 119 AVYDRAALIALP-EEMRERYVQQLAALLPAGC 149 (218)
T ss_pred EEEehHhHhhCC-HHHHHHHHHHHHHHcCCCC
Confidence 999988887764 4556789999999999998
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.84 E-value=3.2e-08 Score=90.40 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=80.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCC-CCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR-LPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~-LPF~D~SFDlV~s~~~ 292 (365)
.+||+|||+|.++..++.. +.+|++++ .+..+.+.+.+ .| .+.++.+++.. ++..++.||.|++...
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD--~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~ 120 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVD--KDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG 120 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence 4699999999999887653 35677644 44556554432 23 24566777655 4445678999998542
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCC--ceeeEEeecC--CC-----CCCCceEEE
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGY--KKVKWATANK--PN-----SKNGEVYLT 356 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gf--k~i~w~v~~K--~d-----~~~~~~y~s 356 (365)
. ..++.++.++.|+||||| ..+.+. .....++++|| +.+.|.+..- .. .-.+.||+
T Consensus 121 ~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~npv~~- 192 (198)
T PRK00377 121 S------EKLKEIISASWEIIKKGGRIVIDAILLETVN-NALSALENIGFNLEITEVIIAKGMKTKVGTAMMTRNPIFI- 192 (198)
T ss_pred c------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHH-HHHHHHHHcCCCeEEEEEehhhcccccCCcEeecCCCEEE-
Confidence 1 124568999999999999 122223 35667888997 3355554322 21 12455666
Q ss_pred EeeecC
Q 017839 357 ALLQKP 362 (365)
Q Consensus 357 all~KP 362 (365)
.+++||
T Consensus 193 ~~~~~~ 198 (198)
T PRK00377 193 ISGEKQ 198 (198)
T ss_pred EEEecC
Confidence 345664
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.83 E-value=1.3e-08 Score=93.76 Aligned_cols=83 Identities=20% Similarity=0.089 Sum_probs=59.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.+++.+++. +..|++.+ .+..+.+.+.+ .+. +.++.+++...+..+++||+|++..++
T Consensus 75 ~VLDiG~GsG~~~~~la~~~~~~g~V~~iD--~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 75 KILEVGTGSGYQAAVCAEAIERRGKVYTVE--IVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred EEEEECcCccHHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 3599999999999888874 34677644 44555554432 232 567778877655567899999999877
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+. ..|+.|+|||||
T Consensus 153 ~~~---------~~~l~~~L~~gG 167 (205)
T PRK13944 153 STI---------PSALVRQLKDGG 167 (205)
T ss_pred chh---------hHHHHHhcCcCc
Confidence 542 247899999999
No 78
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.83 E-value=1.2e-08 Score=93.53 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=67.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCC-CCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLF-DGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..+++.+..+++++ .+..+.+.+.. .+. +.+..++++.+++. +++||+|++..++++.
T Consensus 48 ~vLdlG~G~G~~~~~l~~~~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 48 RVLDVGCGGGLLSEPLARLGANVTGID--ASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEEEe--CCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 359999999999999988877776654 44555444433 232 56667777777765 4899999999999876
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ .+.++.++.++|+|||
T Consensus 126 ~~---~~~~l~~~~~~L~~gG 143 (224)
T TIGR01983 126 PD---PQAFIRACAQLLKPGG 143 (224)
T ss_pred CC---HHHHHHHHHHhcCCCc
Confidence 54 3478999999999999
No 79
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.81 E-value=8.3e-09 Score=95.56 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=63.8
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHH----HHHHHcCC-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYS----EAAALRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~----e~a~~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+||+|||.|..+.+|+++|..|.+.+.+ .... +.+.++++ +.....|.....++ +.||+|++..++++.. .
T Consensus 34 ~LDlgcG~GRNalyLA~~G~~VtAvD~s--~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~-~ 109 (192)
T PF03848_consen 34 ALDLGCGEGRNALYLASQGFDVTAVDIS--PVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ-R 109 (192)
T ss_dssp EEEES-TTSHHHHHHHHTT-EEEEEESS--HHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS--G
T ss_pred EEEcCCCCcHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC-H
Confidence 4999999999999999999998875554 3333 23334454 45566677777764 6899999988886655 4
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
+.....+..|..-++|||
T Consensus 110 ~~~~~i~~~m~~~~~pGG 127 (192)
T PF03848_consen 110 ELRPQIIENMKAATKPGG 127 (192)
T ss_dssp GGHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHhhcCCcE
Confidence 556778999999999999
No 80
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.80 E-value=1.7e-08 Score=83.03 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=60.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCC-CCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQR-LPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~-LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..++++ +..++++ |.+..+.+.+.+ .+ .+.++.+++.. +++..++||.|++.....
T Consensus 22 ~vldlG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 22 VLWDIGAGSGSITIEAARLVPNGRVYAI--ERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred EEEEeCCCCCHHHHHHHHHCCCceEEEE--cCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 4699999999999999886 3566664 444555544322 22 24566666654 555567999999976543
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ .+.++.++.|+|||||
T Consensus 100 ~------~~~~l~~~~~~Lk~gG 116 (124)
T TIGR02469 100 L------LQEILEAIWRRLRPGG 116 (124)
T ss_pred h------HHHHHHHHHHHcCCCC
Confidence 2 3468999999999999
No 81
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.80 E-value=2e-08 Score=94.22 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=60.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
+|-|+|||.|.+|..+. .+.+|.+. |+.+. . -.+...|..++|.+|++.|+|++..+|.. . +..
T Consensus 75 viaD~GCGdA~la~~~~-~~~~V~Sf--DLva~-------n--~~Vtacdia~vPL~~~svDv~VfcLSLMG-T---n~~ 138 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVP-NKHKVHSF--DLVAP-------N--PRVTACDIANVPLEDESVDVAVFCLSLMG-T---NWP 138 (219)
T ss_dssp -EEEES-TT-HHHHH---S---EEEE--ESS-S-------S--TTEEES-TTS-S--TT-EEEEEEES---S-S----HH
T ss_pred EEEECCCchHHHHHhcc-cCceEEEe--eccCC-------C--CCEEEecCccCcCCCCceeEEEEEhhhhC-C---CcH
Confidence 56999999999997764 45677654 43211 1 13566789999999999999998777632 1 233
Q ss_pred HHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhCCceeeEE
Q 017839 304 FLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
..+.|.+||||||| --+.. +.+.+.++++||+...-.
T Consensus 139 ~fi~EA~RvLK~~G~L~IAEV~SRf~~~-~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 139 DFIREANRVLKPGGILKIAEVKSRFENV-KQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEGGG-S-H-HHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHheeccCcEEEEEEecccCcCH-HHHHHHHHHCCCeEEecc
Confidence 68999999999999 11222 347789999999876533
No 82
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.78 E-value=5.1e-08 Score=97.28 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=79.3
Q ss_pred EEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHH----HcCC-CcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 225 GIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAA----LRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~----~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
+||+|||+|.++..+++++ ..++++++ ++.+.+.+. +.++ ..++.++.. ...++.||+|+|+-.+|...
T Consensus 200 VLDlGCG~G~ls~~la~~~p~~~v~~vDi--s~~Al~~A~~nl~~n~l~~~~~~~D~~--~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 200 VLDVGCGAGVLSAVLARHSPKIRLTLSDV--SAAALESSRATLAANGLEGEVFASNVF--SDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred EEEeccCcCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCEEEEcccc--cccCCCccEEEECCCccCCc
Confidence 5999999999999999874 56666444 455554433 2232 234444442 33478999999998775332
Q ss_pred --ChhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecCCC
Q 017839 298 --PVIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKPVS 364 (365)
Q Consensus 298 --d~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP~~ 364 (365)
+....+.++.++.|+||||| ....... |..++++. |..++...... +=.| +.|.-+|+.+
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~-y~~~l~~~-Fg~~~~la~~~----~f~v-~~a~~~~~~~ 341 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP-YPDLLDET-FGSHEVLAQTG----RFKV-YRAIMTRQAK 341 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCC-hHHHHHHH-cCCeEEEEeCC----CEEE-EEEEccCcCC
Confidence 22345688999999999999 2222222 66667654 55544333221 1123 3577777654
No 83
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.77 E-value=2.3e-08 Score=92.54 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=66.1
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC-CcEEeccCCCCC-CCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL-VPLHVPLQQRLP-LFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~-v~~~~g~ae~LP-F~D~SFDlV~s~~~L~~w~d 298 (365)
+||||||+|.++..+++.+..++++++ +..+.+.+.++ +. +.+..++...++ ..++.||+|+++.++++..+
T Consensus 52 vLdiG~G~G~~~~~l~~~~~~v~~iD~--s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~ 129 (233)
T PRK05134 52 VLDVGCGGGILSESMARLGADVTGIDA--SEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPD 129 (233)
T ss_pred EEEeCCCCCHHHHHHHHcCCeEEEEcC--CHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCC
Confidence 599999999999999988877776554 44554444332 22 445566666654 45689999999999987664
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|+|||
T Consensus 130 ---~~~~l~~~~~~L~~gG 145 (233)
T PRK05134 130 ---PASFVRACAKLVKPGG 145 (233)
T ss_pred ---HHHHHHHHHHHcCCCc
Confidence 3468999999999999
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.76 E-value=1.2e-07 Score=89.67 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=83.9
Q ss_pred cccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc---C---CCcEE
Q 017839 199 AFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR---G---LVPLH 270 (365)
Q Consensus 199 ~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R---g---~v~~~ 270 (365)
.++..++.+++.++...... ...+ +||+|||+|.++..+++.. ..++++++ +..+.+.+.+. + .+.++
T Consensus 88 ipr~~te~l~~~~~~~~~~~-~~~~-vLDiG~GsG~~~~~la~~~~~~~v~~iDi--s~~~l~~a~~n~~~~~~~~i~~~ 163 (275)
T PRK09328 88 IPRPETEELVEWALEALLLK-EPLR-VLDLGTGSGAIALALAKERPDAEVTAVDI--SPEALAVARRNAKHGLGARVEFL 163 (275)
T ss_pred eCCCCcHHHHHHHHHhcccc-CCCE-EEEEcCcHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhCCCCcEEEE
Confidence 34445666667666332211 2234 5999999999999998864 66776544 45555544432 1 25566
Q ss_pred eccCCCCCCCCCccceeEEcchhh------c-------ccC----------hhhHHHHHHHHHhhhCCCC-----Ccchh
Q 017839 271 VPLQQRLPLFDGVLDVVRCGHAVN------R-------WIP----------VIMMEFLFYDVDRVLRGGG-----KASDL 322 (365)
Q Consensus 271 ~g~ae~LPF~D~SFDlV~s~~~L~------~-------w~d----------~~~le~aL~Ei~RVLRPGG-----~~~~l 322 (365)
.++... ++.+++||+|+++--.. . +.+ ....+.++.++.++||||| .+...
T Consensus 164 ~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~ 242 (275)
T PRK09328 164 QGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQ 242 (275)
T ss_pred EccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchH
Confidence 666532 34478999999853110 0 000 0123567888999999999 22222
Q ss_pred hhhHHHHHHhhCCceeeE
Q 017839 323 ENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 323 ~~~~~~~l~~~gfk~i~w 340 (365)
.+.+..+++..||..+.+
T Consensus 243 ~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 243 GEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHHHhCCCceeEE
Confidence 334777888999987765
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=98.75 E-value=1.6e-07 Score=87.33 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=70.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhhc--
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNR-- 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~-- 295 (365)
.+||+|||+|.++..++..+. .++++++ +..+.+.+.+ .+. +.++.++... ++++++||+|+++--...
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~~~v~~vD~--s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGAGSVTAVDI--SRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCCCeEEEEEC--CHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCC
Confidence 359999999999999988764 6766554 4555544332 232 4456666544 356889999999742211
Q ss_pred ------------ccC----hhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 296 ------------WIP----VIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 296 ------------w~d----~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
|.. ...++.++.++.|+||||| ...+.. .+..+++..||...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~-~~~~~l~~~g~~~~ 180 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVE-RTLTRLSEAGLDAE 180 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHH-HHHHHHHHCCCCeE
Confidence 110 0124567889999999999 111222 35567777777543
No 86
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.74 E-value=6.2e-08 Score=93.95 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=58.1
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----CC---CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++.|. .|+++++ +..+.+.+.++ +. +.+..++ .+++.++.||+|+++....
T Consensus 162 ~VLDvGcGsG~lai~aa~~g~~~V~avDi--d~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 162 NVIDVGCGSGILSIAALKLGAAKVVGIDI--DPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE- 236 (288)
T ss_pred EEEEeCCChhHHHHHHHHcCCCeEEEEEC--CHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH-
Confidence 469999999999998888774 6776554 45565554432 22 2223232 3455678999999976542
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+..++.++.|+|||||
T Consensus 237 -----~l~~ll~~~~~~LkpgG 253 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGG 253 (288)
T ss_pred -----HHHHHHHHHHHHcCCCc
Confidence 23468899999999999
No 87
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.72 E-value=3.1e-08 Score=93.53 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=77.5
Q ss_pred HHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCC-CcEEeccCCCCCCCCCccce
Q 017839 210 QFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGL-VPLHVPLQQRLPLFDGVLDV 286 (365)
Q Consensus 210 ~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~-v~~~~g~ae~LPF~D~SFDl 286 (365)
++++..+. ...+.|.|+|||+|.-+..|+++ +..+.| +|-+..|.+.++.|.. ..|..+|....- ++..+|+
T Consensus 21 dLla~Vp~--~~~~~v~DLGCGpGnsTelL~~RwP~A~i~G--iDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 21 DLLARVPL--ERPRRVVDLGCGPGNSTELLARRWPDAVITG--IDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred HHHhhCCc--cccceeeecCCCCCHHHHHHHHhCCCCeEee--ccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccch
Confidence 45544442 22345699999999999999998 455554 6777889888877764 678889887775 6889999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++-+| ||.++-. ..|.-+.--|.|||
T Consensus 96 lfaNAvl-qWlpdH~--~ll~rL~~~L~Pgg 123 (257)
T COG4106 96 LFANAVL-QWLPDHP--ELLPRLVSQLAPGG 123 (257)
T ss_pred hhhhhhh-hhccccH--HHHHHHHHhhCCCc
Confidence 9999999 7887542 58888999999999
No 88
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.72 E-value=9.7e-08 Score=93.15 Aligned_cols=91 Identities=11% Similarity=0.018 Sum_probs=62.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc-----CC--CcEEeccCCC-CCCCCCc----cceeE
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR-----GL--VPLHVPLQQR-LPLFDGV----LDVVR 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R-----g~--v~~~~g~ae~-LPF~D~S----FDlV~ 288 (365)
.+||+|||||..+..|++. +.++++ +|++..|.+.++++ .. +.++.++..+ +++.... .++++
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~~~~~~~~--iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALRQPARYVP--IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred eEEecCCCcchhHHHHHHhhccCCeEEE--EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 4599999999999999876 467776 55667787665443 11 3346777654 4554432 33455
Q ss_pred EcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+...+.++. ++....+|++++++|+|||
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCC
Confidence 556676655 4445689999999999999
No 89
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.69 E-value=7.7e-08 Score=89.27 Aligned_cols=83 Identities=18% Similarity=0.049 Sum_probs=60.5
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.+++.+++. + ..|++++ .++.+.+.+.++ | .+.+..+++...++.++.||+|++..++.
T Consensus 79 ~VLdIG~GsG~~t~~la~~~~~~~~V~~vE--~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 79 KVLEIGTGSGYHAAVVAEIVGKSGKVVTIE--RIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred EEEEECCcccHHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence 4699999999999988875 2 4677644 445666554432 3 26678888877777789999999987654
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. ..++.+.|||||
T Consensus 157 ~~---------~~~l~~~LkpgG 170 (212)
T PRK13942 157 DI---------PKPLIEQLKDGG 170 (212)
T ss_pred cc---------hHHHHHhhCCCc
Confidence 32 236778999999
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.68 E-value=6.8e-08 Score=89.29 Aligned_cols=83 Identities=18% Similarity=0.042 Sum_probs=58.6
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.+++.|++.. ..|++++ .+..+.+.+.+ .|. +.++.+++...+...+.||+|++..+..
T Consensus 80 ~VLDiG~GsG~~a~~la~~~~~~g~V~~vD--~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 80 KVLEIGTGSGYQAAVLAEIVGRDGLVVSIE--RIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP 157 (215)
T ss_pred EEEEECCCccHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc
Confidence 35999999999999998863 2466644 44556554433 243 5677788766555567999999876543
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ ...++.+.|||||
T Consensus 158 ~---------~~~~~~~~L~~gG 171 (215)
T TIGR00080 158 K---------IPEALIDQLKEGG 171 (215)
T ss_pred c---------ccHHHHHhcCcCc
Confidence 2 2346889999999
No 91
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.67 E-value=2.7e-08 Score=81.82 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=64.4
Q ss_pred EEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH----c---CCCcEEeccCCCCC--CCCCccceeEEcchhh
Q 017839 225 GIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL----R---GLVPLHVPLQQRLP--LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~----R---g~v~~~~g~ae~LP--F~D~SFDlV~s~~~L~ 294 (365)
+||+|||+|.++..+++++ .++++.++| ....+.++. . ..+.++.++...++ +.++.||+|+++--..
T Consensus 4 vlD~~~G~G~~~~~~~~~~~~~~~gvdi~--~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 4 VLDPGCGSGTFLLAALRRGAARVTGVDID--PEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEETSTTCHHHHHHHHHCTCEEEEEESS--HHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred EEEcCcchHHHHHHHHHHCCCeEEEEEEC--HHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 5999999999999999988 788876665 444444332 1 23678888877765 8899999999987554
Q ss_pred cccC-----hhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIP-----VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d-----~~~le~aL~Ei~RVLRPGG 317 (365)
.... ......++.++.|+|||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG 109 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGG 109 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCe
Confidence 3211 1123568999999999999
No 92
>PTZ00146 fibrillarin; Provisional
Probab=98.66 E-value=3.9e-07 Score=89.48 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=79.3
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChh----HHHHHHHcCCCcEEeccCCC---CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAP----YSEAAALRGLVPLHVPLQQR---LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~----~~e~a~~Rg~v~~~~g~ae~---LPF~D~SFDlV~s~~~L 293 (365)
.|||+|||+|+++..+++. + -.|+++++ +.. +.+.+..+..+.++.+++.. +++..++||+|++..+
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~--s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva- 211 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEF--SHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA- 211 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEEC--cHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC-
Confidence 4699999999999999986 2 35666544 333 34444444445566677642 3334568999998764
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC------------CcchhhhhH---HHHHHhhCCceeeEEeecCCCCCCCceEEEEe
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG------------KASDLENVY---GPLIGKLGYKKVKWATANKPNSKNGEVYLTAL 358 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG------------~~~~l~~~~---~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sal 358 (365)
.. + ..+.++.|+.|+||||| .....++.+ ..+++..||+.+.-.....- .++...+.++
T Consensus 212 ~p---d-q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py--~~~h~~v~~~ 285 (293)
T PTZ00146 212 QP---D-QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF--ERDHAVVIGV 285 (293)
T ss_pred Cc---c-hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc--cCCcEEEEEE
Confidence 21 1 23467789999999999 111112222 36788899997755433222 3555445455
Q ss_pred eec
Q 017839 359 LQK 361 (365)
Q Consensus 359 l~K 361 (365)
+..
T Consensus 286 ~~~ 288 (293)
T PTZ00146 286 YRP 288 (293)
T ss_pred EcC
Confidence 443
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.65 E-value=3e-07 Score=89.27 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=71.2
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcc---
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGH--- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~--- 291 (365)
.+||+|||+|.++..++++ +..|++++ ++..+.+.+.+ .|. +.++.++... ++++++||+|+++=
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~~~~v~avD--is~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFPEAEVDAVD--ISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 4599999999999999986 46777654 44556554433 243 5677777532 34567899999961
Q ss_pred ---hhh------cccCh----------hhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCcee
Q 017839 292 ---AVN------RWIPV----------IMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 292 ---~L~------~w~d~----------~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i 338 (365)
.+. ++.+. ...+..+.++.++|+||| .+.... ....++...||.-.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~-~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSME-ALEEAYPDVPFTWL 270 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHH-HHHHHHHhCCCcee
Confidence 000 11111 123567899999999999 333323 36677888786543
No 94
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.65 E-value=3e-07 Score=94.23 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=90.0
Q ss_pred ccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC-CCcEEec
Q 017839 200 FKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG-LVPLHVP 272 (365)
Q Consensus 200 ~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg-~v~~~~g 272 (365)
++..++.+++.+++..+ ++ .+ +||+|||+|.++..++.+ +..+++++ ++..+.+.+++ .+ .+.++.+
T Consensus 234 PRpeTE~LVe~aL~~l~--~~-~r-VLDLGcGSG~IaiaLA~~~p~a~VtAVD--iS~~ALe~AreNa~~~g~rV~fi~g 307 (423)
T PRK14966 234 PRPETEHLVEAVLARLP--EN-GR-VWDLGTGSGAVAVTVALERPDAFVRASD--ISPPALETARKNAADLGARVEFAHG 307 (423)
T ss_pred CCccHHHHHHHhhhccC--CC-CE-EEEEeChhhHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHcCCcEEEEEc
Confidence 33345666676665332 13 23 599999999999988864 46777654 45666665543 23 2567777
Q ss_pred cCCCCCC-CCCccceeEEcchhh---------------------cccC-hhhHHHHHHHHHhhhCCCC-----Ccchhhh
Q 017839 273 LQQRLPL-FDGVLDVVRCGHAVN---------------------RWIP-VIMMEFLFYDVDRVLRGGG-----KASDLEN 324 (365)
Q Consensus 273 ~ae~LPF-~D~SFDlV~s~~~L~---------------------~w~d-~~~le~aL~Ei~RVLRPGG-----~~~~l~~ 324 (365)
+.....+ .+++||+|+|+--.. ...+ .+..+..+.++.+.|+||| .+.+..+
T Consensus 308 Dl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e 387 (423)
T PRK14966 308 SWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGA 387 (423)
T ss_pred chhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHH
Confidence 7644333 246899999954210 0000 0123456777889999999 2333334
Q ss_pred hHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecC
Q 017839 325 VYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 325 ~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP 362 (365)
....+++..||+.+.- ..|-.+.+-++.+-+.|-
T Consensus 388 ~V~~ll~~~Gf~~v~v----~kDl~G~dR~v~~~~~~~ 421 (423)
T PRK14966 388 AVRGVLAENGFSGVET----LPDLAGLDRVTLGKYMKH 421 (423)
T ss_pred HHHHHHHHCCCcEEEE----EEcCCCCcEEEEEEEhhh
Confidence 4777888889876532 223222333444655553
No 95
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=1.6e-07 Score=89.74 Aligned_cols=136 Identities=20% Similarity=0.289 Sum_probs=90.4
Q ss_pred EEEEcCcccHHHHHHhhcC----CeEEEeccCCChhHHHHHHHcC-----CC-cEEecc-CC--CCCCCCCccceeEEcc
Q 017839 225 GIDVGGATGSFAARMKLYN----ITILTTTMNLGAPYSEAAALRG-----LV-PLHVPL-QQ--RLPLFDGVLDVVRCGH 291 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g----v~Vv~~~ldl~~~~~e~a~~Rg-----~v-~~~~g~-ae--~LPF~D~SFDlV~s~~ 291 (365)
+|+||||.|...--+.+.. ..+.+ .|.+....+...++. .+ +++... .. .-|...+++|+|++.+
T Consensus 75 ilEvGCGvGNtvfPll~~~~n~~l~v~a--cDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 75 ILEVGCGVGNTVFPLLKTSPNNRLKVYA--CDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred heeeccCCCcccchhhhcCCCCCeEEEE--cCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 4999999999887777642 55554 455555555554432 12 233221 22 3478899999999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC-----------------Ccch------------------hhhhHHHHHHhhCCc
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG-----------------KASD------------------LENVYGPLIGKLGYK 336 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG-----------------~~~~------------------l~~~~~~~l~~~gfk 336 (365)
+|.-..+ +.+..++.+++|+||||| ..++ -.+.+..|+...||.
T Consensus 153 vLSAi~p-ek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EEeccCh-HHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 9976555 457789999999999999 0000 012345799999997
Q ss_pred eeeEEee------cCCCCCCCceEEEEeeecCC
Q 017839 337 KVKWATA------NKPNSKNGEVYLTALLQKPV 363 (365)
Q Consensus 337 ~i~w~v~------~K~d~~~~~~y~sall~KP~ 363 (365)
.++-.+. .+.......+++-|.++||.
T Consensus 232 ~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 232 EVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred hhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 7544322 22223566788999999994
No 96
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.64 E-value=2e-08 Score=95.54 Aligned_cols=128 Identities=18% Similarity=0.232 Sum_probs=90.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCc-EEeccCCCC-C-CCCCc
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVP-LHVPLQQRL-P-LFDGV 283 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~-~~~g~ae~L-P-F~D~S 283 (365)
.+.+++..... |..|.+||+|||||-++..|..+-....| +|+++.|.+.+.++|+.. ++++++..+ + -.+..
T Consensus 113 ~l~emI~~~~~--g~F~~~lDLGCGTGL~G~~lR~~a~~ltG--vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 113 LLAEMIGKADL--GPFRRMLDLGCGTGLTGEALRDMADRLTG--VDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHHhccC--CccceeeecccCcCcccHhHHHHHhhccC--CchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCc
Confidence 34555543222 55677899999999999999876444443 567789999999998743 455555432 3 46788
Q ss_pred cceeEEcchhhcccChhhHHHHHHHHHhhhCCCC----Ccchh----------------hhhH-HHHHHhhCCceeeEE
Q 017839 284 LDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG----KASDL----------------ENVY-GPLIGKLGYKKVKWA 341 (365)
Q Consensus 284 FDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG----~~~~l----------------~~~~-~~~l~~~gfk~i~w~ 341 (365)
||+|++..|+.-.. .++-.+.-+.+.|.||| ..+++ .+.| ..+++..||..+...
T Consensus 189 ~DLi~AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 189 FDLIVAADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred ccchhhhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 99999999996544 46678999999999999 11111 1233 468899999888655
No 97
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=4.2e-08 Score=93.53 Aligned_cols=102 Identities=13% Similarity=0.214 Sum_probs=74.9
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc---CC-CcEEeccCCCCCCCCCc
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR---GL-VPLHVPLQQRLPLFDGV 283 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R---g~-v~~~~g~ae~LPF~D~S 283 (365)
.+.+.+.++. ...++|||||.|..+..|..+|+.-+. -+|.+..|.+-++.. ++ +..++++-|.|||.+|+
T Consensus 63 aDrvfD~kk~----fp~a~diGcs~G~v~rhl~~e~vekli-~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens 137 (325)
T KOG2940|consen 63 ADRVFDCKKS----FPTAFDIGCSLGAVKRHLRGEGVEKLI-MMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENS 137 (325)
T ss_pred HHHHHHHhhh----CcceeecccchhhhhHHHHhcchhhee-eeecchHHHHHhhccCCCceEEEEEecchhcccccccc
Confidence 4445555442 345799999999999999988854322 245556676654332 22 34567788999999999
Q ss_pred cceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 284 LDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
||+|+++..+ ||.++ +...+..+.-.|||.|
T Consensus 138 ~DLiisSlsl-HW~Nd--LPg~m~~ck~~lKPDg 168 (325)
T KOG2940|consen 138 VDLIISSLSL-HWTND--LPGSMIQCKLALKPDG 168 (325)
T ss_pred hhhhhhhhhh-hhhcc--CchHHHHHHHhcCCCc
Confidence 9999999999 79864 3468899999999999
No 98
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.64 E-value=2.6e-07 Score=89.25 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=81.8
Q ss_pred ccCCccchHHHHhhhc-cccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC---CcE
Q 017839 200 FKSELDLPVTQFLDLA-KAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL---VPL 269 (365)
Q Consensus 200 ~~g~~~f~I~~vL~~~-p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~ 269 (365)
++..++.+++.++... +. ....+ +||+|||+|.++..++.. +..|+++++ +..+.+.+.+ .+. +.+
T Consensus 94 Pr~ete~lv~~~l~~~~~~-~~~~~-vLDlG~GsG~i~l~la~~~~~~~v~avDi--s~~al~~a~~n~~~~~~~~~v~~ 169 (284)
T TIGR00536 94 PRPETEELVEKALASLISQ-NPILH-ILDLGTGSGCIALALAYEFPNAEVIAVDI--SPDALAVAEENAEKNQLEHRVEF 169 (284)
T ss_pred CCCccHHHHHHHHHHhhhc-CCCCE-EEEEeccHhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEE
Confidence 3444566666665422 21 11134 599999999999999876 357776544 4555554433 232 567
Q ss_pred EeccCCCCCCCCCccceeEEcc-------------hhhcccCh----------hhHHHHHHHHHhhhCCCC-----Ccch
Q 017839 270 HVPLQQRLPLFDGVLDVVRCGH-------------AVNRWIPV----------IMMEFLFYDVDRVLRGGG-----KASD 321 (365)
Q Consensus 270 ~~g~ae~LPF~D~SFDlV~s~~-------------~L~~w~d~----------~~le~aL~Ei~RVLRPGG-----~~~~ 321 (365)
+.++... +++++.||+|+++- ++. +.+. ...+..+.++.++|+||| .+..
T Consensus 170 ~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 170 IQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred EECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 7776543 45566899999961 221 1111 134578899999999999 3333
Q ss_pred hhhhHHHHHH-hhCCceee
Q 017839 322 LENVYGPLIG-KLGYKKVK 339 (365)
Q Consensus 322 l~~~~~~~l~-~~gfk~i~ 339 (365)
..+....++. ..||..+.
T Consensus 248 q~~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 248 QQKSLKELLRIKFTWYDVE 266 (284)
T ss_pred HHHHHHHHHHhcCCCceeE
Confidence 3334566666 56887654
No 99
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.63 E-value=1.7e-07 Score=71.84 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=63.0
Q ss_pred EEEEcCcccHHHHHHhh-cCCeEEEeccCCChhHHHHHH---HcC---CCcEEeccCCCCCC-CCCccceeEEcchhhcc
Q 017839 225 GIDVGGATGSFAARMKL-YNITILTTTMNLGAPYSEAAA---LRG---LVPLHVPLQQRLPL-FDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~---~Rg---~v~~~~g~ae~LPF-~D~SFDlV~s~~~L~~w 296 (365)
+||+|||+|.++..+++ .+..+++.+++ ....+.+. ..+ .+.++.++....+. ..+.||+|++..+++++
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDIS--PVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 49999999999999987 45666664443 44444333 111 24566676655543 67889999999998653
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
. ......+..+.++|||||
T Consensus 80 ~--~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 80 V--EDLARFLEEARRLLKPGG 98 (107)
T ss_pred h--hHHHHHHHHHHHHcCCCC
Confidence 2 245678999999999999
No 100
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.62 E-value=1.7e-07 Score=94.93 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=60.8
Q ss_pred EEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----C-----CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 225 GIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----G-----LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----g-----~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
+||+|||+|.++..+++++ ..|++++. +..+.+.+++. + .+.++.+++.. .+.+++||+|+|+-.+
T Consensus 232 VLDLGCGtGvi~i~la~~~P~~~V~~vD~--S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 232 IVDLGCGNGVIGLTLLDKNPQAKVVFVDE--SPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPF 308 (378)
T ss_pred EEEEeccccHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCc
Confidence 5999999999999999874 67776544 45555544321 1 23556565422 1345689999998665
Q ss_pred hcc--cChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRW--IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w--~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.- ..+.....++.++.|+|||||
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhcccCC
Confidence 321 122334678999999999999
No 101
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.8e-07 Score=90.73 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=71.1
Q ss_pred ceEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHH---HcCCCc--EEeccCCCCCCCC-CccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAA---LRGLVP--LHVPLQQRLPLFD-GVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~---~Rg~v~--~~~g~ae~LPF~D-~SFDlV~s~~~L~~ 295 (365)
+.+||+|||+|-++...++.|+. |+++++| ....+.++ +++.++ ........+.+.. +.||+|+++---+
T Consensus 164 ~~vlDvGcGSGILaIAa~kLGA~~v~g~DiD--p~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~- 240 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKLGAKKVVGVDID--PQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE- 240 (300)
T ss_pred CEEEEecCChhHHHHHHHHcCCceEEEecCC--HHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH-
Confidence 46799999999999999999954 8887776 33333332 233333 1122223344555 5999999986322
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w 340 (365)
-+.....++.|.||||| ...+..+.....+++.||+.+.+
T Consensus 241 -----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 241 -----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred -----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 23468889999999999 22222333556677778877643
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=98.59 E-value=1.7e-07 Score=92.11 Aligned_cols=91 Identities=10% Similarity=-0.048 Sum_probs=63.3
Q ss_pred ceEEEEcCcccHHHHH-Hhh-c--CCeEEEeccCCChhHHHHHHH-----c---CCCcEEeccCCCCCCCCCccceeEEc
Q 017839 223 RLGIDVGGATGSFAAR-MKL-Y--NITILTTTMNLGAPYSEAAAL-----R---GLVPLHVPLQQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~-Lae-~--gv~Vv~~~ldl~~~~~e~a~~-----R---g~v~~~~g~ae~LPF~D~SFDlV~s~ 290 (365)
+.|+|||||.|.+++. +++ . +.++++.+. ++.+.+.+++ . ..+.|..+++..++-..+.||+|++.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~--d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDI--DPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 3469999998855444 332 2 346666544 4556554432 2 24788999877664345789999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++|... ..+.++..+.|+|||||
T Consensus 203 -ALi~~dk~-~k~~vL~~l~~~LkPGG 227 (296)
T PLN03075 203 -ALVGMDKE-EKVKVIEHLGKHMAPGA 227 (296)
T ss_pred -cccccccc-cHHHHHHHHHHhcCCCc
Confidence 88888532 35689999999999999
No 103
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.58 E-value=4.7e-07 Score=87.42 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=84.0
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
..+||||.|-|..+.+|+...-.|.++.. +..|.....+||.- .+- .....=.+..||+|.|..+|+.-.. +
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f~~v~aTE~--S~~Mr~rL~~kg~~-vl~--~~~w~~~~~~fDvIscLNvLDRc~~---P 167 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLFKEVYATEA--SPPMRWRLSKKGFT-VLD--IDDWQQTDFKFDVISCLNVLDRCDR---P 167 (265)
T ss_pred CceEEecCCCcHHHHHHHhhcceEEeecC--CHHHHHHHHhCCCe-EEe--hhhhhccCCceEEEeehhhhhccCC---H
Confidence 34699999999999999987656665544 57888777888852 222 1222223568999999999965433 3
Q ss_pred HHHHHHHHhhhCCCC---------------Cc-------------------chhhhhHHHHHHhhCCceeeEEeecCCC
Q 017839 303 EFLFYDVDRVLRGGG---------------KA-------------------SDLENVYGPLIGKLGYKKVKWATANKPN 347 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG---------------~~-------------------~~l~~~~~~~l~~~gfk~i~w~v~~K~d 347 (365)
...|++|++.|+|+| .+ ++....+ +.++-+||+..+|.....+-
T Consensus 168 ~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~~tr~PYLc 245 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEVERWTRLPYLC 245 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEEEEEeccCccc
Confidence 479999999999999 11 1112233 88999999999999888764
No 104
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.56 E-value=3.9e-07 Score=88.14 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+.+ +|-|+|||-|.+|. .++ ..|.+ +|+.+ .+ -.+...|..++|.+|+|.|++++-..|.. .
T Consensus 180 ~~~-vIaD~GCGEakiA~--~~~-~kV~S--fDL~a-------~~--~~V~~cDm~~vPl~d~svDvaV~CLSLMg-t-- 241 (325)
T KOG3045|consen 180 KNI-VIADFGCGEAKIAS--SER-HKVHS--FDLVA-------VN--ERVIACDMRNVPLEDESVDVAVFCLSLMG-T-- 241 (325)
T ss_pred Cce-EEEecccchhhhhh--ccc-cceee--eeeec-------CC--CceeeccccCCcCccCcccEEEeeHhhhc-c--
Confidence 544 56999999999886 222 23443 45421 11 13456688889999999999996555532 1
Q ss_pred hhHHHHHHHHHhhhCCCC--C-------cchhhhhHHHHHHhhCCceeeEEeec
Q 017839 300 IMMEFLFYDVDRVLRGGG--K-------ASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG--~-------~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
++..++.|++||||||| . -.+. ..+...+..+||...+-.+.+
T Consensus 242 -n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv-~~f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 242 -NLADFIKEANRILKPGGLLYIAEVKSRFSDV-KGFVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred -cHHHHHHHHHHHhccCceEEEEehhhhcccH-HHHHHHHHHcCCeeeehhhhc
Confidence 34468999999999999 1 1222 247788999999876544443
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=8.9e-07 Score=90.44 Aligned_cols=134 Identities=15% Similarity=0.194 Sum_probs=80.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCC--CCCCccceeE----Ec
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLP--LFDGVLDVVR----CG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LP--F~D~SFDlV~----s~ 290 (365)
.+||+|||+|..+..+++++ .+|++. |.+..+.+.+.+ .|. +.++.+++..++ +.+++||.|+ |+
T Consensus 247 ~VLDlgaG~G~~t~~la~~~~~~~v~a~--D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 247 RVLDACAAPGGKTAHILELAPQAQVVAL--DIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred EEEEeCCCCChHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 35999999999999998864 467764 444555544432 232 456778887765 4578899998 33
Q ss_pred ch--hh-----cccC-hh-------hHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCceee------
Q 017839 291 HA--VN-----RWIP-VI-------MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYKKVK------ 339 (365)
Q Consensus 291 ~~--L~-----~w~d-~~-------~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk~i~------ 339 (365)
.. +. .|.. .. ..+.+|.++.++||||| ..++.++.....+++. +|+.+.
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~ 404 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQ 404 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCCCCC
Confidence 21 11 1211 11 12468999999999999 2344444555666655 454333
Q ss_pred --EEeecCCCCCCCceEEEEeeec
Q 017839 340 --WATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 340 --w~v~~K~d~~~~~~y~sall~K 361 (365)
+.+-... .+.++.|+ |.++|
T Consensus 405 ~~~~~~P~~-~~~dGff~-a~l~k 426 (427)
T PRK10901 405 PGRQLLPGE-EDGDGFFY-ALLIK 426 (427)
T ss_pred CceEECCCC-CCCCCeEE-EEEEE
Confidence 2222211 13455665 77776
No 106
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=9.7e-07 Score=90.34 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=82.3
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCC----CCCCccceeEE-
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLP----LFDGVLDVVRC- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LP----F~D~SFDlV~s- 289 (365)
.|||+|||+|..+..+++. ...|++. |.+..+.+.+.+ .|. +.++.+++..++ +.+++||.|++
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~--D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQGEIWAV--DRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCCceEEEE--cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 3599999999999988875 2466654 555556554432 243 567778887776 66889999995
Q ss_pred ---c--chhhcccC------hhh-------HHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCceeeEE
Q 017839 290 ---G--HAVNRWIP------VIM-------MEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYKKVKWA 341 (365)
Q Consensus 290 ---~--~~L~~w~d------~~~-------le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk~i~w~ 341 (365)
+ .++++-.+ ... ....|.++.|+||||| ..++.+++....+++. +|+....
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~- 411 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPP- 411 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCC-
Confidence 2 23322111 011 2467999999999999 3344455566677765 4543211
Q ss_pred eecCC--CCCCCceEEEEeeecC
Q 017839 342 TANKP--NSKNGEVYLTALLQKP 362 (365)
Q Consensus 342 v~~K~--d~~~~~~y~sall~KP 362 (365)
.... +..+.+.|+-|.|+|.
T Consensus 412 -~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 412 -KQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred -CCccCCCCCCCCcEEEEEEEeC
Confidence 0001 1123345555999884
No 107
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.49 E-value=4.2e-07 Score=86.88 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=75.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC----CCcEEeccCCCC--CCCCCccceeEE---
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG----LVPLHVPLQQRL--PLFDGVLDVVRC--- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg----~v~~~~g~ae~L--PF~D~SFDlV~s--- 289 (365)
.|||.+.|-|.+|....++|+ .|+++..|. ...+.+.. |+ .+.++.||+.++ .|.|++||+|+-
T Consensus 137 rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp--~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPP 214 (287)
T COG2521 137 RVLDTCTGLGYTAIEALERGAIHVITVEKDP--NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPP 214 (287)
T ss_pred EeeeeccCccHHHHHHHHcCCcEEEEEeeCC--CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCC
Confidence 459999999999999999997 888765552 12222211 11 256788887654 588999999873
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC-------------CcchhhhhHHHHHHhhCCceee
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG-------------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
.+++-. .. --+.+..|++||||||| .+.++.+-..+-++++||.+++
T Consensus 215 RfS~Ag--eL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 215 RFSLAG--EL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred ccchhh--hH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 111111 10 12468999999999999 2344555567789999998774
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.48 E-value=1.7e-06 Score=82.63 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=78.7
Q ss_pred ccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc---CCCcEEeccC
Q 017839 200 FKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR---GLVPLHVPLQ 274 (365)
Q Consensus 200 ~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R---g~v~~~~g~a 274 (365)
++..++.+++.++...+...+.. .+||+|||+|.++..+++. +..|+++++ +..+.+.+.+. ....++.++.
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~-~vLDlg~GsG~i~l~la~~~~~~~v~~vDi--s~~al~~A~~N~~~~~~~~~~~D~ 142 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTL-VVVDLCCGSGAVGAALAAALDGIELHAADI--DPAAVRCARRNLADAGGTVHEGDL 142 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCC-EEEEecCchHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCEEEEeec
Confidence 44456667777765432111222 4599999999999998865 457776544 45565544321 1146777775
Q ss_pred CC-CCC-CCCccceeEEcchhh--------------ccc-------C--hhhHHHHHHHHHhhhCCCC-----C-cchhh
Q 017839 275 QR-LPL-FDGVLDVVRCGHAVN--------------RWI-------P--VIMMEFLFYDVDRVLRGGG-----K-ASDLE 323 (365)
Q Consensus 275 e~-LPF-~D~SFDlV~s~~~L~--------------~w~-------d--~~~le~aL~Ei~RVLRPGG-----~-~~~l~ 323 (365)
.+ ++- ..+.||+|+++--.. +.. . .+.++..+..+.++||||| . ..+..
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~ 222 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAP 222 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHH
Confidence 43 331 135799999873110 110 0 0113467778889999999 2 23333
Q ss_pred hhHHHHHHhhCCc
Q 017839 324 NVYGPLIGKLGYK 336 (365)
Q Consensus 324 ~~~~~~l~~~gfk 336 (365)
....++++.||+
T Consensus 223 -~v~~~l~~~g~~ 234 (251)
T TIGR03704 223 -LAVEAFARAGLI 234 (251)
T ss_pred -HHHHHHHHCCCC
Confidence 356677777764
No 109
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=1.8e-06 Score=88.61 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=69.2
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEE----c
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRC----G 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s----~ 290 (365)
.+||+|||+|..+..+++. +..|++. |.+..+.+.+.+ .|. +.++.+++..++ ++++||+|++ +
T Consensus 253 ~VLDlgaG~G~kt~~la~~~~~~~~V~av--D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 253 TVLDLCAAPGGKSTFMAELMQNRGQITAV--DRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred EEEEECCCCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 4699999999988888763 3466654 455666554432 343 567778887776 6789999994 2
Q ss_pred c--hhh-----cccC-hhh-------HHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCc
Q 017839 291 H--AVN-----RWIP-VIM-------MEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYK 336 (365)
Q Consensus 291 ~--~L~-----~w~d-~~~-------le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk 336 (365)
. ++. .|.. .+. ...+|.++.++||||| ..++.+++....+++. +|+
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 400 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFS 400 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence 1 111 1211 111 2358999999999999 2333344455566655 354
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=98.46 E-value=8.8e-07 Score=86.41 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=76.0
Q ss_pred EEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhcccCh--
Q 017839 225 GIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV-- 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~-- 299 (365)
|||+|||+|.++..++++ +..|++++ ++..+.+.++++ ..+.++.+++..++ .+++||+|+++-.+.+....
T Consensus 68 VLDLGcGsGilsl~la~r~~~~~V~gVD--isp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 68 VLDLCAGIGRLSFCMLHRCKPEKIVCVE--LNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred EEEcCCCCCHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhh
Confidence 599999999999888775 46777654 446677666543 23567888887765 35789999997766542211
Q ss_pred hh---------------HHHHHHHHHhhhCCCC------------CcchhhhhHHHHHHhhCCc
Q 017839 300 IM---------------MEFLFYDVDRVLRGGG------------KASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 300 ~~---------------le~aL~Ei~RVLRPGG------------~~~~l~~~~~~~l~~~gfk 336 (365)
.. ++..+.++.++|+|+| +..--.+.|..+++..||.
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 00 2467788899999999 1111134588999999984
No 111
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.46 E-value=8.2e-07 Score=81.58 Aligned_cols=82 Identities=17% Similarity=0.074 Sum_probs=56.1
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
+||||||+|.++..|++.+..+++++. +..+.+.+.++ +. +.+..+++......++.||+|++..++.+.
T Consensus 82 VLeiG~GsG~~t~~la~~~~~v~~vd~--~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~-- 157 (212)
T PRK00312 82 VLEIGTGSGYQAAVLAHLVRRVFSVER--IKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI-- 157 (212)
T ss_pred EEEECCCccHHHHHHHHHhCEEEEEeC--CHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchhh--
Confidence 599999999999988877556666444 45555544332 33 566777654322245899999998765432
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
..++.+.|+|||
T Consensus 158 -------~~~l~~~L~~gG 169 (212)
T PRK00312 158 -------PRALLEQLKEGG 169 (212)
T ss_pred -------hHHHHHhcCCCc
Confidence 346789999999
No 112
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.45 E-value=2.7e-07 Score=86.24 Aligned_cols=89 Identities=24% Similarity=0.266 Sum_probs=65.8
Q ss_pred CceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 222 IRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+.+||||+|+|.++..++++ +.+++. +|+ +...+.+.+...+.++.++.- =|++. +|+|+..++||+|.++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v--~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATV--FDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDE 174 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEE--EE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HH
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCccee--ecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcchH
Confidence 456799999999999999887 465543 443 334444444566888888865 45555 9999999999999876
Q ss_pred hhHHHHHHHHHhhhCCC--C
Q 017839 300 IMMEFLFYDVDRVLRGG--G 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPG--G 317 (365)
+ ....|+.+++.|+|| |
T Consensus 175 ~-~~~iL~~~~~al~pg~~g 193 (241)
T PF00891_consen 175 D-CVKILRNAAAALKPGKDG 193 (241)
T ss_dssp H-HHHHHHHHHHHSEECTTE
T ss_pred H-HHHHHHHHHHHhCCCCCC
Confidence 5 457999999999999 8
No 113
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=2.6e-06 Score=87.28 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=69.6
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCC--CCCCccceeEEcc-
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLP--LFDGVLDVVRCGH- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LP--F~D~SFDlV~s~~- 291 (365)
.+||+|||+|.++..++++ +..|+++ |++..+.+.+. ..|. +.++.+++..++ ++ ++||+|++.-
T Consensus 253 ~VLDlgaG~G~~t~~la~~~~~~~~v~av--Di~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 253 TVLDACAAPGGKTTHIAELLKNTGKVVAL--DIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred EEEEeCCCCCHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 4699999999999998875 3466654 44455554433 2343 567778877653 33 7899998631
Q ss_pred -----hhhc-----cc-Chhh-------HHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhC-Cceee
Q 017839 292 -----AVNR-----WI-PVIM-------MEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLG-YKKVK 339 (365)
Q Consensus 292 -----~L~~-----w~-d~~~-------le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~g-fk~i~ 339 (365)
.+.+ |. ...+ ...+|.++.|+||||| ..++.+.+....+++.+ |+.+.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence 1111 11 0011 1357999999999999 22334444556667653 65543
No 114
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.41 E-value=7.8e-07 Score=79.58 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=58.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++++. +|+.+++ +..+.+.+.+ .+. +.++.++.-. +++++.||+|+|+--++
T Consensus 34 ~vLDlG~G~G~i~~~la~~~~~~~v~~vDi--~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~- 109 (170)
T PF05175_consen 34 RVLDLGCGSGVISLALAKRGPDAKVTAVDI--NPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH- 109 (170)
T ss_dssp EEEEETSTTSHHHHHHHHTSTCEEEEEEES--BHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB-
T ss_pred eEEEecCChHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh-
Confidence 359999999999999999864 4665544 4555554432 232 4456665422 23489999999986542
Q ss_pred ccCh---hhHHHHHHHHHhhhCCCC
Q 017839 296 WIPV---IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~---~~le~aL~Ei~RVLRPGG 317 (365)
.... ...+..+.+..+.|||||
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCC
Confidence 2221 235678999999999999
No 115
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.41 E-value=2e-06 Score=78.21 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=55.6
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..+++. +..|++++ .+..+.+.+.+ .+. +.++.+++.. ++.....+|.|+....
T Consensus 43 ~VLDiG~G~G~~~~~la~~~~~~~V~~vD--~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~-- 118 (196)
T PRK07402 43 VLWDIGAGTGTIPVEAGLLCPKGRVIAIE--RDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG-- 118 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC--
Confidence 4699999999999988764 45677644 44556554432 232 5567776643 3333345677654321
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..++.++.++.|+|+|||
T Consensus 119 -----~~~~~~l~~~~~~LkpgG 136 (196)
T PRK07402 119 -----RPIKEILQAVWQYLKPGG 136 (196)
T ss_pred -----cCHHHHHHHHHHhcCCCe
Confidence 124578999999999999
No 116
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.39 E-value=3e-06 Score=81.51 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=85.7
Q ss_pred eEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCCCC--CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQRLP--LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~LP--F~D~SFDlV~s~~~ 292 (365)
.+||+|||+|..+..++++ . +.++++++ ++.+.++|.+. ..+.++.+|..++. +.-.+||+|+|+=-
T Consensus 47 ~IlDlGaG~G~l~L~la~r~~~a~I~~VEi--q~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 47 RILDLGAGNGALGLLLAQRTEKAKIVGVEI--QEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred eEEEecCCcCHHHHHHhccCCCCcEEEEEe--CHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 4599999999999999987 3 77776554 46666665431 23677888866542 34448999999753
Q ss_pred hh---------------cccChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCceeeEE-eecCCCCCCC
Q 017839 293 VN---------------RWIPVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKVKWA-TANKPNSKNG 351 (365)
Q Consensus 293 L~---------------~w~d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i~w~-v~~K~d~~~~ 351 (365)
.. ++.....++..++-..++||||| ...+.-..+..++++++|.-.+-. |-.|.++.-.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~ 204 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYPKIGKAAN 204 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecCCCCCcce
Confidence 21 12222346677888899999999 444433336667777777543333 5555554444
Q ss_pred ceEEEEee
Q 017839 352 EVYLTALL 359 (365)
Q Consensus 352 ~~y~sall 359 (365)
-|-++|+.
T Consensus 205 ~vLv~~~k 212 (248)
T COG4123 205 RVLVEAIK 212 (248)
T ss_pred EEEEEEec
Confidence 45555543
No 117
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.39 E-value=1.7e-06 Score=67.05 Aligned_cols=87 Identities=29% Similarity=0.371 Sum_probs=58.5
Q ss_pred EEEEcCcccHHH--HHHhhcCCeEEEeccCCChhHHHHHHHcC----C--CcEEeccCCC--CCCCC-CccceeEEcchh
Q 017839 225 GIDVGGATGSFA--ARMKLYNITILTTTMNLGAPYSEAAALRG----L--VPLHVPLQQR--LPLFD-GVLDVVRCGHAV 293 (365)
Q Consensus 225 ~LDIGCGtG~fa--a~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg----~--v~~~~g~ae~--LPF~D-~SFDlV~s~~~L 293 (365)
+||+|||+|... ..+...+..+++ +|....+.+....+. . +.+..++... +||.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG--VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE--EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 599999999954 333333345665 455555544432221 1 3566666554 89998 599999 76666
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++.+ ....+.++.|+|+|||
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g 149 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGG 149 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCc
Confidence 56654 4579999999999999
No 118
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.39 E-value=4.4e-06 Score=80.14 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=66.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEE----c
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRC----G 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s----~ 290 (365)
.|||+|||+|..+..+++. ...|++. |.+..+.+.+. ..|. +.++.+++..++...+.||.|++ +
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~--D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVAN--EFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEE--cCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 3599999999999888774 2366654 44555554433 2343 45666787777777778999985 2
Q ss_pred c--hhh-------cccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHh
Q 017839 291 H--AVN-------RWIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGK 332 (365)
Q Consensus 291 ~--~L~-------~w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~ 332 (365)
. ++. .|.+. .....+|.++.+.||||| ..++.+++...++++
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 1 111 12111 012358999999999999 233334444455554
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.38 E-value=3.9e-06 Score=85.68 Aligned_cols=108 Identities=9% Similarity=0.059 Sum_probs=66.0
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----HcCC-CcE--EeccCCCCCC--CCCccceeEE---
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LRGL-VPL--HVPLQQRLPL--FDGVLDVVRC--- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~Rg~-v~~--~~g~ae~LPF--~D~SFDlV~s--- 289 (365)
.|||+|||+|..+..+++. +..|++. |.+..+.+.+. ..|. +.+ ..+++..+++ .+++||.|++
T Consensus 241 ~VLDlcag~G~kt~~la~~~~~~~v~a~--D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 241 TILDACAAPGGKTTHILELAPQAQVVAL--DIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred eEEEeCCCccHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 4599999999999998875 2566654 44455554433 2243 122 3455555555 6788999984
Q ss_pred -c--chhhcccC------hh-------hHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh
Q 017839 290 -G--HAVNRWIP------VI-------MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL 333 (365)
Q Consensus 290 -~--~~L~~w~d------~~-------~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~ 333 (365)
+ .++++..+ .. ....+|.++.|+||||| ..++.+++....+++.
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 2 23332211 00 12468999999999999 2234444455566655
No 120
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.36 E-value=1.6e-06 Score=85.30 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=66.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHH----HHHcCCC-cEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEA----AALRGLV-PLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~----a~~Rg~v-~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||||-++...+..|+ .|+++++|. ...+. +...|+- .+..... ..+....||+|+++-...
T Consensus 164 ~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~~N~~~N~~~~~~~v~~~--~~~~~~~~dlvvANI~~~--- 236 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAARENAELNGVEDRIEVSLS--EDLVEGKFDLVVANILAD--- 236 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHHHHHHHTT-TTCEEESCT--SCTCCS-EEEEEEES-HH---
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHHHHHHHcCCCeeEEEEEe--cccccccCCEEEECCCHH---
Confidence 569999999999999888885 577777763 23332 3334432 2322222 233459999999976442
Q ss_pred ChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeE
Q 017839 298 PVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w 340 (365)
.+...+.++.++|+||| ..++.++ ..+.+++ ||+.++.
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~-v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEEQEDE-VIEAYKQ-GFELVEE 281 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHH-HHHHHHT-TEEEEEE
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHHHHHH-HHHHHHC-CCEEEEE
Confidence 23457788999999999 3344443 5556676 8886643
No 121
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.35 E-value=2.4e-06 Score=89.38 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=70.0
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcc---
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGH--- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~--- 291 (365)
.+||+|||+|.++..++.. +..|+++++ +..+.+.+.+ .+ .+.++.++... +++++.||+|+|+-
T Consensus 141 ~VLDlG~GsG~iai~la~~~p~~~v~avDi--s~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELPNANVIATDI--SLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred EEEEccCchhHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 4699999999999988764 467776544 4555554433 23 25566666422 33467899999942
Q ss_pred -----------hhhccc------Ch---hhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCcee
Q 017839 292 -----------AVNRWI------PV---IMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 292 -----------~L~~w~------d~---~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i 338 (365)
++.+.+ .. +.....+.++.++|+||| .+....+...+++.+.||+.+
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCce
Confidence 111110 01 123446788999999999 222223346678888898754
No 122
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.33 E-value=2.5e-06 Score=83.90 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=67.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcc---
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGH--- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~--- 291 (365)
.+||+|||+|.++..++.+ +..|++++ ++..+.+.+.+ .+. +.++.++... ++++++||+|+++=
T Consensus 136 ~VLDlG~GsG~iai~la~~~p~~~V~avD--is~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAFPDAEVDAVD--ISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred EEEEEechhhHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 4699999999999999876 46777654 44556554432 232 6677777532 23467899999861
Q ss_pred ------hhh---cccCh----------hhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCC
Q 017839 292 ------AVN---RWIPV----------IMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGY 335 (365)
Q Consensus 292 ------~L~---~w~d~----------~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gf 335 (365)
.+. ++.+. +..+..+.++.++|+||| .+....+ ...++...||
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~~-~~~~~~~~~~ 279 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVH-LEEAYPDVPF 279 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHHH-HHHHHhhCCC
Confidence 000 11111 123567899999999999 2222222 4456666554
No 123
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.29 E-value=3e-06 Score=75.41 Aligned_cols=68 Identities=6% Similarity=-0.011 Sum_probs=53.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++++..++++++| ..+.+.+.++ +.+.++.+++.+++++++.||.|+++--+
T Consensus 16 ~vLEiG~G~G~lt~~l~~~~~~v~~vE~~--~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py 87 (169)
T smart00650 16 TVLEIGPGKGALTEELLERAARVTAIEID--PRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY 87 (169)
T ss_pred EEEEECCCccHHHHHHHhcCCeEEEEECC--HHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc
Confidence 46999999999999999987777765554 5565555443 24678889999999998889999987654
No 124
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.7e-05 Score=77.15 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=80.3
Q ss_pred cCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHH----HcCCC
Q 017839 194 SSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAA----LRGLV 267 (365)
Q Consensus 194 ~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~----~Rg~v 267 (365)
....+.|+.+++.+++.++...+. .+. .+||||||+|..|..++.++ .+|++++++ ....+.|. ..|..
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~-~~~--~ilDlGTGSG~iai~la~~~~~~~V~a~Dis--~~Al~~A~~Na~~~~l~ 160 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQ-LDK--RILDLGTGSGAIAIALAKEGPDAEVIAVDIS--PDALALARENAERNGLV 160 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhh-cCC--cEEEecCChHHHHHHHHhhCcCCeEEEEECC--HHHHHHHHHHHHHcCCc
Confidence 334455666777777776632221 122 35999999999999999876 478876665 44444432 23433
Q ss_pred cEEeccCCCCCCCCCccceeEEcchh--h-----------c------ccC---hhhHHHHHHHHHhhhCCCC-----Ccc
Q 017839 268 PLHVPLQQRLPLFDGVLDVVRCGHAV--N-----------R------WIP---VIMMEFLFYDVDRVLRGGG-----KAS 320 (365)
Q Consensus 268 ~~~~g~ae~LPF~D~SFDlV~s~~~L--~-----------~------w~d---~~~le~aL~Ei~RVLRPGG-----~~~ 320 (365)
.+......-+.=-.+.||+|+|+==. . + |.. .+..+..+.++.+.|+||| .+.
T Consensus 161 ~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 161 RVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred cEEEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 32222111111112389999986411 0 0 000 1234567889999999999 332
Q ss_pred hhhhhHHHHHHhhCC
Q 017839 321 DLENVYGPLIGKLGY 335 (365)
Q Consensus 321 ~l~~~~~~~l~~~gf 335 (365)
...+...+++.+.||
T Consensus 241 ~q~~~v~~~~~~~~~ 255 (280)
T COG2890 241 TQGEAVKALFEDTGF 255 (280)
T ss_pred CcHHHHHHHHHhcCC
Confidence 223346779999996
No 125
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.26 E-value=8.1e-06 Score=77.51 Aligned_cols=91 Identities=8% Similarity=-0.154 Sum_probs=69.6
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH-----------------c-CCCcEEeccCCCCCCC---C
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL-----------------R-GLVPLHVPLQQRLPLF---D 281 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~-----------------R-g~v~~~~g~ae~LPF~---D 281 (365)
|+ |+.|||.|.-+..|+++|..|++++++ +...+.+.+ + +.+.++++|.-.|+.. -
T Consensus 46 rv-LvPgCGkg~D~~~LA~~G~~V~GvDlS--~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 46 VC-LIPMCGCSIDMLFFLSKGVKVIGIELS--EKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred eE-EEeCCCChHHHHHHHhCCCcEEEEecC--HHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 54 999999999999999999999986554 434333221 1 2367888888778642 2
Q ss_pred CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 282 GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 282 ~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.||+|+=..++.++.+ +......+-+.++|+|||
T Consensus 123 ~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg 157 (226)
T PRK13256 123 PVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNT 157 (226)
T ss_pred CCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCc
Confidence 68999998888877754 556789999999999999
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.24 E-value=4.7e-06 Score=82.80 Aligned_cols=83 Identities=20% Similarity=0.073 Sum_probs=58.6
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.+++.+++.. ..|+++ |.+..+.+.+++ .|. +.++.+++...+...+.||+|++...+.
T Consensus 83 ~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 83 RVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred EEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchH
Confidence 45999999999999998752 246654 444566554433 243 4567788777666667899999987654
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. ...+.++|||||
T Consensus 161 ~i---------p~~~~~~LkpgG 174 (322)
T PRK13943 161 EV---------PETWFTQLKEGG 174 (322)
T ss_pred Hh---------HHHHHHhcCCCC
Confidence 32 235788999999
No 127
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.21 E-value=2.4e-05 Score=73.28 Aligned_cols=92 Identities=23% Similarity=0.306 Sum_probs=61.7
Q ss_pred EEEEcCcccHHHHHHhhc--CCeEEEeccCCCh--hHHHHHHHcCC----CcEEeccCCC-CC------CCCCccceeEE
Q 017839 225 GIDVGGATGSFAARMKLY--NITILTTTMNLGA--PYSEAAALRGL----VPLHVPLQQR-LP------LFDGVLDVVRC 289 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~--~~~e~a~~Rg~----v~~~~g~ae~-LP------F~D~SFDlV~s 289 (365)
||+||||||.-+.+++++ .++--.+++|... ...+.+.+.+. .|+.....+. -| +..++||+|+|
T Consensus 29 vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 29 VLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFC 108 (204)
T ss_pred EEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeee
Confidence 599999999999999886 3443344554321 22233444443 2343322221 22 35679999999
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..++ |..+-...+..+.++.|+|+|||
T Consensus 109 ~N~l-HI~p~~~~~~lf~~a~~~L~~gG 135 (204)
T PF06080_consen 109 INML-HISPWSAVEGLFAGAARLLKPGG 135 (204)
T ss_pred hhHH-HhcCHHHHHHHHHHHHHhCCCCC
Confidence 9998 56666667789999999999999
No 128
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.20 E-value=2.8e-06 Score=78.43 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=59.8
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHH----HHHHHcCC--CcEEeccCCC-CC--CCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYS----EAAALRGL--VPLHVPLQQR-LP--LFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~----e~a~~Rg~--v~~~~g~ae~-LP--F~D~SFDlV~s~~ 291 (365)
.+.||||||.|.|...+|+. +..++|+++. .... +.+..+++ +.++.+++.. |+ |+++++|.|+..+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~--~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIR--KKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES---HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecc--hHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 36799999999999999987 4777876543 2222 23344454 5567777766 32 5689999999877
Q ss_pred hhhcccChh------hHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
- ..|.... --...+.++.|+|+|||
T Consensus 97 P-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG 127 (195)
T PF02390_consen 97 P-DPWPKKRHHKRRLVNPEFLELLARVLKPGG 127 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEE
T ss_pred C-CCCcccchhhhhcCCchHHHHHHHHcCCCC
Confidence 4 2454211 01258999999999999
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.20 E-value=6.4e-06 Score=84.61 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=70.3
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCC-CCCCccceeEE----
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLP-LFDGVLDVVRC---- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LP-F~D~SFDlV~s---- 289 (365)
.|||+|||+|..+..+++. +..|++. |++..+.+.+. ..|. +.+..+++..++ +.+++||.|.+
T Consensus 240 ~VLD~cagpGgkt~~la~~~~~~g~V~a~--Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMKDQGKILAV--DISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 3599999999999888875 3567764 44556655443 2343 457778888887 66889999985
Q ss_pred c-c-hhhc-------ccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCc
Q 017839 290 G-H-AVNR-------WIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYK 336 (365)
Q Consensus 290 ~-~-~L~~-------w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk 336 (365)
+ . ++.. |... ......|.++.++||||| ..++.+++....+++. +|+
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAE 389 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcE
Confidence 2 1 1211 1100 012456889999999999 3344455455555543 444
No 130
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.19 E-value=2.9e-05 Score=71.86 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=71.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCC-CCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQ-RLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae-~LPF~D~SFDlV~s~~~L~ 294 (365)
+++|||||||+.+..++.. ..+|++ +|.++...+.+. +-|. +.++.|++- .|+=.+ +||.|+.... .
T Consensus 37 ~l~DIGaGtGsi~iE~a~~~p~~~v~A--Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-~ 112 (187)
T COG2242 37 RLWDIGAGTGSITIEWALAGPSGRVIA--IERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-G 112 (187)
T ss_pred EEEEeCCCccHHHHHHHHhCCCceEEE--EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-C
Confidence 4599999999999999843 356665 443344443332 2242 346667653 355222 8999999887 2
Q ss_pred cccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCC-ceeeEE--eecCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGY-KKVKWA--TANKPN 347 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gf-k~i~w~--v~~K~d 347 (365)
+ ++..|.....-||||| ..-+......+.+++.|| +.++.. .++++.
T Consensus 113 ~------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg 168 (187)
T COG2242 113 N------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKPLG 168 (187)
T ss_pred C------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEeecceecc
Confidence 3 3468888999999999 112222234578899999 444433 444443
No 131
>PRK00811 spermidine synthase; Provisional
Probab=98.17 E-value=4.8e-06 Score=80.87 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=61.6
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHc-----------CCCcEEeccCCC-CCCCCCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALR-----------GLVPLHVPLQQR-LPLFDGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~R-----------g~v~~~~g~ae~-LPF~D~SFDlV~ 288 (365)
+.+||||||+|.++..+.++ ++ .|+.+++| +.+.+.+.+. ..+.++.+|+.. ++..+++||+|+
T Consensus 78 ~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid--~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 78 KRVLIIGGGDGGTLREVLKHPSVEKITLVEID--ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CEEEEEecCchHHHHHHHcCCCCCEEEEEeCC--HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 34699999999999999886 43 56554554 5565554331 235677777654 444678999999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
+-.. .++.+... .+.++.++.|+|+|||
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gG 185 (283)
T PRK00811 156 VDST-DPVGPAEGLFTKEFYENCKRALKEDG 185 (283)
T ss_pred ECCC-CCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 8543 23332211 1457889999999999
No 132
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.14 E-value=3.3e-05 Score=79.28 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=76.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCC----CCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQ----RLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae----~LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..|++.+..|++++ .+..+.+.+.+ .|. +.++.+++. .+++.+++||+|++.--.
T Consensus 300 ~VLDlgcGtG~~sl~la~~~~~V~gvD--~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr 377 (443)
T PRK13168 300 RVLDLFCGLGNFTLPLARQAAEVVGVE--GVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPR 377 (443)
T ss_pred EEEEEeccCCHHHHHHHHhCCEEEEEe--CCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCC
Confidence 469999999999999998887787654 45666655433 232 567888764 356778899999874321
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeec
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~K 361 (365)
..+...+..+.+ ++|++ .-..+.++.. .+...||+..+ ...--..+....+=.-|+|+|
T Consensus 378 ------~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~-~L~~~gY~l~~-i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 378 ------AGAAEVMQALAK-LGPKRIVYVSCNPATLARDAG-VLVEAGYRLKR-AGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred ------cChHHHHHHHHh-cCCCeEEEEEeChHHhhccHH-HHhhCCcEEEE-EEEeccCCCCCcEEEEEEEEe
Confidence 112234444444 68888 2222222233 34466897543 333333344444445566665
No 133
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.13 E-value=1.1e-06 Score=85.68 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=64.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
++||+|||-|.....= -..-+++.++. .....-+...|......+++-.+||.+.+||.+.+..+++||......+
T Consensus 48 v~~d~gCGngky~~~~--p~~~~ig~D~c--~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~ 123 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLGVN--PLCLIIGCDLC--TGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRE 123 (293)
T ss_pred eeeecccCCcccCcCC--Ccceeeecchh--hhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHH
Confidence 5799999999743211 12344554332 1111112222332577889999999999999999999999998776677
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.++.|+.|+|||||
T Consensus 124 ~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 124 RALEELLRVLRPGG 137 (293)
T ss_pred HHHHHHHHHhcCCC
Confidence 89999999999999
No 134
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.13 E-value=6.4e-06 Score=76.40 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=86.0
Q ss_pred ccccCceecccCCccchHHHHhhhcc----ccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHH---HHH
Q 017839 191 SEKSSSFLAFKSELDLPVTQFLDLAK----AANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEA---AAL 263 (365)
Q Consensus 191 ~~e~~~W~~~~g~~~f~I~~vL~~~p----~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~---a~~ 263 (365)
+.+++-|+.... .+-.++.+++... ..+.. | |||+|||.|.+...|++.|..---+++|++....+. +++
T Consensus 36 gd~GEvWFg~~a-e~riv~wl~d~~~~~rv~~~A~-~-VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe 112 (227)
T KOG1271|consen 36 GDEGEVWFGEDA-EERIVDWLKDLIVISRVSKQAD-R-VLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE 112 (227)
T ss_pred CCccceecCCcH-HHHHHHHHHhhhhhhhhccccc-c-eeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH
Confidence 568888987542 1223333333221 11121 4 499999999999999998744311235555555443 344
Q ss_pred c-CC---CcEEeccCCCCCCCCCccceeEEcchhhc--cc---ChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHH
Q 017839 264 R-GL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNR--WI---PVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPL 329 (365)
Q Consensus 264 R-g~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~--w~---d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~ 329 (365)
| |. +.|.+.+...--|..+.||+|+=-..+.- .. ....+...+--+.+.|+||| .-+-..+.+...
T Consensus 113 ~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 113 RDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred hcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 4 32 66888877666889999999994443321 11 11222346778899999999 111112224447
Q ss_pred HHhhCCceee
Q 017839 330 IGKLGYKKVK 339 (365)
Q Consensus 330 l~~~gfk~i~ 339 (365)
++..||+.++
T Consensus 193 f~~~~f~~~~ 202 (227)
T KOG1271|consen 193 FENFNFEYLS 202 (227)
T ss_pred HhcCCeEEEE
Confidence 7887776654
No 135
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.08 E-value=1.2e-05 Score=78.88 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=65.5
Q ss_pred CCCceEEEEcCccc----HHHHHHhhc------CCeEEEeccCCChhHHHHHHH--------------------------
Q 017839 220 SVIRLGIDVGGATG----SFAARMKLY------NITILTTTMNLGAPYSEAAAL-------------------------- 263 (365)
Q Consensus 220 g~iRi~LDIGCGtG----~faa~Lae~------gv~Vv~~~ldl~~~~~e~a~~-------------------------- 263 (365)
+.+|| ...||.|| ++|..+.+. .+.|+++++| ....+.|++
T Consensus 115 ~~irI-WSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs--~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~ 191 (287)
T PRK10611 115 GEYRV-WSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDID--TEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGP 191 (287)
T ss_pred CCEEE-EEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECC--HHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCC
Confidence 45887 99999999 467666663 3678887765 344433321
Q ss_pred -----------cCCCcEEeccCCCCCCC-CCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 264 -----------RGLVPLHVPLQQRLPLF-DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 264 -----------Rg~v~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|..|.|...+....||+ .+.||+|+|..++.++.+ +..+.++..+++.|+|||
T Consensus 192 ~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 192 HEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDG 256 (287)
T ss_pred CCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCc
Confidence 01234444554444543 689999999999988754 456789999999999999
No 136
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.07 E-value=1.2e-05 Score=76.81 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=50.9
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
..+||||||+|.++..|++++..++++++| ..+.+.+.++ +.+.++.+|+..+++++ ||.|+++.-.
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~~v~~vEid--~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~NlPy 101 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAKKVYAIELD--PRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVSNLPY 101 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCCEEEEEECC--HHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEEcCCc
Confidence 356999999999999999988777765554 5566555432 34678889998888764 8999998654
No 137
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=5.3e-05 Score=74.73 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=56.6
Q ss_pred EEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHH----HcCCC--cEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 225 GIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAA----LRGLV--PLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~----~Rg~v--~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
+||+|||.|.++..|++++ ..+.-++. +....+.++ ..+.- .++.++ --.+-.+ +||+|+|+=-+|.-
T Consensus 162 vlDlGCG~Gvlg~~la~~~p~~~vtmvDv--n~~Av~~ar~Nl~~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPPfh~G 237 (300)
T COG2813 162 VLDLGCGYGVLGLVLAKKSPQAKLTLVDV--NARAVESARKNLAANGVENTEVWASN-LYEPVEG-KFDLIISNPPFHAG 237 (300)
T ss_pred EEEeCCCccHHHHHHHHhCCCCeEEEEec--CHHHHHHHHHhHHHcCCCccEEEEec-ccccccc-cccEEEeCCCccCC
Confidence 4999999999999999985 34332233 334444332 22322 234443 3344455 99999999877532
Q ss_pred cC--hhhHHHHHHHHHhhhCCCC
Q 017839 297 IP--VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d--~~~le~aL~Ei~RVLRPGG 317 (365)
.+ ....+..+.+..+.|++||
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCC
Confidence 21 1123468999999999999
No 138
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.05 E-value=1.7e-05 Score=74.97 Aligned_cols=122 Identities=12% Similarity=0.143 Sum_probs=75.5
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH-----cC-CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL-----RG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~-----Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
...+||.|+|.|..+..+.-.-...+.. ++..+.+.+.+.+ .+ +..++....|.+--..+.+|+|++-+|+-|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDl-VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDL-VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEE-EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEE-eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4567999999999998775432222221 2334566666653 12 234566666776545789999999999999
Q ss_pred ccChhhHHHHHHHHHhhhCCCC----------Ccc-hh----------hhhHHHHHHhhCCceeeEEeecC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG----------KAS-DL----------ENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG----------~~~-~l----------~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
..|+ ++-.+|+-....|+||| .+. .. .+.|..+|+++|++.++-..-+-
T Consensus 135 LTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 135 LTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp S-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred CCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 8865 46679999999999999 111 11 23588999999999887655443
No 139
>PRK01581 speE spermidine synthase; Validated
Probab=98.04 E-value=2.4e-05 Score=79.15 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=70.1
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH--------c-----CCCcEEeccCCC-CCCCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL--------R-----GLVPLHVPLQQR-LPLFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~--------R-----g~v~~~~g~ae~-LPF~D~SFDl 286 (365)
+.||+||||+|..+..+.+.. ..|+.++ +++.+.+.+.. + ..+.++.+|+.+ ++-.++.||+
T Consensus 152 krVLIIGgGdG~tlrelLk~~~v~~It~VE--IDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 152 KRVLILGGGDGLALREVLKYETVLHVDLVD--LDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEe--CCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 456999999999988888764 3555444 44677776653 1 135567777654 4555778999
Q ss_pred eEEcchhhcccC---hhhHHHHHHHHHhhhCCCC-----Cc-ch-hhh---hHHHHHHhhCCcee
Q 017839 287 VRCGHAVNRWIP---VIMMEFLFYDVDRVLRGGG-----KA-SD-LEN---VYGPLIGKLGYKKV 338 (365)
Q Consensus 287 V~s~~~L~~w~d---~~~le~aL~Ei~RVLRPGG-----~~-~~-l~~---~~~~~l~~~gfk~i 338 (365)
|++... ..... .---..++..+.|.|+||| .. .. ..+ .....+++.|+...
T Consensus 230 IIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 230 IIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence 998632 11110 0011347899999999999 11 11 111 13467788887554
No 140
>PRK03612 spermidine synthase; Provisional
Probab=98.03 E-value=2.1e-05 Score=82.69 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=70.7
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc-------------CCCcEEeccCCC-CCCCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR-------------GLVPLHVPLQQR-LPLFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R-------------g~v~~~~g~ae~-LPF~D~SFDl 286 (365)
+.+||||||+|..+..+.+++ .+++.+++ ++.+.+.+++. ..+.++.+|+.+ +...+++||+
T Consensus 299 ~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEi--d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 299 RRVLVLGGGDGLALREVLKYPDVEQVTLVDL--DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CeEEEEcCCccHHHHHHHhCCCcCeEEEEEC--CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 346999999999999988774 35665444 46677766541 135567777654 3444679999
Q ss_pred eEEcchhhcccChh---hHHHHHHHHHhhhCCCC-----C-----cchhhhhHHHHHHhhCC
Q 017839 287 VRCGHAVNRWIPVI---MMEFLFYDVDRVLRGGG-----K-----ASDLENVYGPLIGKLGY 335 (365)
Q Consensus 287 V~s~~~L~~w~d~~---~le~aL~Ei~RVLRPGG-----~-----~~~l~~~~~~~l~~~gf 335 (365)
|++...- .+.+.. --+.+++++.|.||||| . ..+.-....+.+++.||
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 9987432 222110 01247889999999999 1 11111235667888888
No 141
>PRK04457 spermidine synthase; Provisional
Probab=98.02 E-value=1.2e-05 Score=77.29 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=59.7
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCC-CCCCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQR-LPLFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~-LPF~D~SFDlV~s~~~ 292 (365)
+.+||||||+|.++..++++ +..++++++| +.+.+.+.+. ..+.++.+|+.. ++-..++||+|++..
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 34599999999999999875 3566654554 5666655542 225567777543 333346899999742
Q ss_pred hh--cccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VN--RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~--~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. .....-....++.++.++|+|||
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgG 171 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDG 171 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCc
Confidence 21 11110112468999999999999
No 142
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.96 E-value=1.8e-05 Score=70.86 Aligned_cols=135 Identities=19% Similarity=0.259 Sum_probs=70.0
Q ss_pred CCCceEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHcCCCcEEecc----CCCCCCCCCccceeEEcch
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALRGLVPLHVPL----QQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~----ae~LPF~D~SFDlV~s~~~ 292 (365)
+...++||+||++|.|+..+.+++ ..|+++++....+....-.-+|-+ ..... .+.++=....||+|+|-.+
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~-~~~~~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDI-TNPENIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGG-EEEEHSHHGGGSHGTTTCSESEEEE---
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeeccc-chhhHHHhhhhhccccccCcceeccccc
Confidence 334567999999999999999987 667766554221110000001111 11011 1112212279999998763
Q ss_pred hh--------cccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEE
Q 017839 293 VN--------RWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTA 357 (365)
Q Consensus 293 L~--------~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sa 357 (365)
.. ++........++.=+.+.||||| ...+.. .+...+++ .|+++++.--....++.+|.|+-+
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~-~~~~~l~~-~F~~v~~~Kp~~sr~~s~E~Ylv~ 178 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE-ELIYLLKR-CFSKVKIVKPPSSRSESSEEYLVC 178 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH-HHHHHHHH-HHHHEEEEE-TTSBTTCBEEEEES
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH-HHHHHHHh-CCeEEEEEECcCCCCCccEEEEEE
Confidence 21 11111122234444557899999 333333 34444444 577787775555545789999854
No 143
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.95 E-value=2.2e-05 Score=75.60 Aligned_cols=67 Identities=7% Similarity=0.000 Sum_probs=50.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc---CCCcEEeccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR---GLVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..+++++..++++++| ..+.+.+.++ ..+.++.+|+..+++++-.+|.|+++--
T Consensus 45 ~VLEiG~G~G~lt~~L~~~~~~v~avE~d--~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 45 NVLEIGPGLGALTEPLLERAAKVTAVEID--RDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred eEEEeCCCccHHHHHHHHhCCcEEEEECC--HHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 46999999999999999987777765554 5676665543 3467888999999887644688887653
No 144
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.94 E-value=5.2e-05 Score=74.47 Aligned_cols=86 Identities=15% Similarity=0.037 Sum_probs=56.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCC-CCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPL-FDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF-~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..+++++..|+++++ +..+.+.+. ..|+ +.++.+++..+.. .++.||+|++.=
T Consensus 176 ~VLDl~cG~G~~sl~la~~~~~V~gvD~--s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP----- 248 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCATPGMQLTGIEI--SAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP----- 248 (315)
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEEEeC--CHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC-----
Confidence 4699999999999999998888887554 456655443 2343 5688888876543 356899999762
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
+...+...+.++..-++|++
T Consensus 249 -Pr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 249 -PRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred -CCCCccHHHHHHHHHcCCCe
Confidence 22222223334444466766
No 145
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.93 E-value=1.3e-05 Score=80.05 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=63.8
Q ss_pred ceEEEEcCcccHHHHHHhhcC-CeEEEeccCCChh-HHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 223 RLGIDVGGATGSFAARMKLYN-ITILTTTMNLGAP-YSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~-~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
++|||||||||.++..-++.| ..|.+++.+--+. ..+.+...+ ++.++.|.++.+-.|-...|+|++-+.-+...
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll 141 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL 141 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHH
Confidence 578999999999998888888 4555543321111 122333344 36777787776544488999999877543322
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
-...++..|..=+|-|+|||
T Consensus 142 ~EsMldsVl~ARdkwL~~~G 161 (346)
T KOG1499|consen 142 YESMLDSVLYARDKWLKEGG 161 (346)
T ss_pred HhhhhhhhhhhhhhccCCCc
Confidence 23456677888899999999
No 146
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.93 E-value=5.7e-05 Score=71.78 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=54.2
Q ss_pred cchHHHHhhhcc-ccCCCCceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHH-HHHcCCCc-EEeccCCC----
Q 017839 205 DLPVTQFLDLAK-AANSVIRLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEA-AALRGLVP-LHVPLQQR---- 276 (365)
Q Consensus 205 ~f~I~~vL~~~p-~~~g~iRi~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~-a~~Rg~v~-~~~g~ae~---- 276 (365)
.+-+..++...+ ...| +++||+|||||.|+..++++|+ .|++ +|.+..|... ..+...+. +...+...
T Consensus 60 ~~kL~~~l~~~~~~~~~--~~vlDiG~gtG~~t~~l~~~ga~~v~a--vD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKN--KIVLDVGSSTGGFTDCALQKGAKEVYG--VDVGYNQLAEKLRQDERVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHHHHHHhcCCCCCC--CEEEEcccCCCHHHHHHHHcCCCEEEE--EeCCHHHHHHHHhcCCCeeEeecCCcccCCHh
Confidence 344555555322 1123 4679999999999999999975 4665 4554434332 22222221 22223332
Q ss_pred -CCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 277 -LPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 277 -LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++..-..||+++++..+ .+..+.+.|+| |
T Consensus 136 ~~~~d~~~~DvsfiS~~~-----------~l~~i~~~l~~-~ 165 (228)
T TIGR00478 136 DIFPDFATFDVSFISLIS-----------ILPELDLLLNP-N 165 (228)
T ss_pred HcCCCceeeeEEEeehHh-----------HHHHHHHHhCc-C
Confidence 33222478888777653 24466777777 6
No 147
>PHA03412 putative methyltransferase; Provisional
Probab=97.92 E-value=3.7e-05 Score=73.70 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=60.1
Q ss_pred EEEEcCcccHHHHHHhhc-----CCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhccc-
Q 017839 225 GIDVGGATGSFAARMKLY-----NITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI- 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~-----gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~- 297 (365)
|||+|||+|.++..++++ ...|.++++| ..+.+.+.+. ..+.++.++....++ +++||+|+++==+....
T Consensus 53 VLDlG~GSG~Lalala~~~~~~~~~~V~aVEID--~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 53 VVDLCAGIGGLSFAMVHMMMYAKPREIVCVELN--HTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred EEEccChHHHHHHHHHHhcccCCCcEEEEEECC--HHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 499999999999988764 3566665554 5555555432 125788888876665 67999999985432111
Q ss_pred -C-------hhhHHHHHHHHHhhhCCCC
Q 017839 298 -P-------VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 -d-------~~~le~aL~Ei~RVLRPGG 317 (365)
+ ......++....|.++||+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 1 0113347778889888888
No 148
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.91 E-value=8.1e-06 Score=82.49 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=64.5
Q ss_pred EEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHH--HHHHH---cCCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYS--EAAAL---RGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~--e~a~~---Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
++|+|||.|....+++... ..+++.+.+.-.-.. +.... .....++.++....||+|++||.|.+..+..|-.+
T Consensus 114 ~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~ 193 (364)
T KOG1269|consen 114 VLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPD 193 (364)
T ss_pred ccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCc
Confidence 3999999999998888753 555554333110000 11111 12234577788999999999999999999988664
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
...++.|++||++|||
T Consensus 194 ---~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 194 ---LEKVYAEIYRVLKPGG 209 (364)
T ss_pred ---HHHHHHHHhcccCCCc
Confidence 4579999999999999
No 149
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.87 E-value=1.3e-05 Score=75.02 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=52.4
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.+++.|+.. | ..|++++.+ +...+.+++ .+. +.+..+++.. +| ....||.|++..+.
T Consensus 75 ~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~--~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 75 RVLEIGTGSGYQAALLAHLVGPVGRVVSVERD--PELAERARRNLARLGIDNVEVVVGDGSEGWP-EEAPFDRIIVTAAV 151 (209)
T ss_dssp EEEEES-TTSHHHHHHHHHHSTTEEEEEEESB--HHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-GG-SEEEEEESSBB
T ss_pred EEEEecCCCcHHHHHHHHhcCccceEEEECcc--HHHHHHHHHHHHHhccCceeEEEcchhhccc-cCCCcCEEEEeecc
Confidence 3599999999999999875 3 246654443 444444332 243 5677777543 33 45679999998876
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.... .++.+-||+||
T Consensus 152 ~~ip---------~~l~~qL~~gG 166 (209)
T PF01135_consen 152 PEIP---------EALLEQLKPGG 166 (209)
T ss_dssp SS-----------HHHHHTEEEEE
T ss_pred chHH---------HHHHHhcCCCc
Confidence 4321 35778899999
No 150
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.87 E-value=8.6e-05 Score=70.51 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=48.6
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccc---eeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLD---VVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFD---lV~s~~~L 293 (365)
..+||||||+|.++..|++++..+++.+.| ..+.+.+.++ +.+.++.+|+..+|++ .|| +|+++--+
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d--~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRAKKVTAIEID--PRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCcEEEEECC--HHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence 356999999999999999988777765554 5565555432 3456788899888876 566 77776543
No 151
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.83 E-value=4.6e-05 Score=72.45 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=63.0
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCC--ChhHHHHHHHcCC--CcEEeccCCCC-C--CCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNL--GAPYSEAAALRGL--VPLHVPLQQRL-P--LFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl--~~~~~e~a~~Rg~--v~~~~g~ae~L-P--F~D~SFDlV~s~~~L 293 (365)
.|+||||||.|.|...||+++ ...+|+++-. -+...+.+.+.|+ +.++.+||..+ + +++++.|-|+..+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 367999999999999999985 4556644321 1122344555565 45566676543 2 46679999998875
Q ss_pred hcccChh------hHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
+.|.-.. --...+.++.|+|||||
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG 158 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGG 158 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCC
Confidence 3555211 11258999999999999
No 152
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=9.7e-05 Score=71.32 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=74.5
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----CC---CcEEeccCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQR 276 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~ 276 (365)
+|-..+.+.| |. |+ ||.|.|+|.++++|+.. | ..|++.+ ..+.+.+.|.+. |+ +.+..+|...
T Consensus 85 ~I~~~~gi~p---g~-rV-lEAGtGSG~lt~~La~~vg~~G~v~tyE--~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 85 YIVARLGISP---GS-RV-LEAGTGSGALTAYLARAVGPEGHVTTYE--IREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred HHHHHcCCCC---CC-EE-EEcccCchHHHHHHHHhhCCCceEEEEE--ecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 3444444444 53 54 99999999999999952 3 3566544 445555554331 32 4556677666
Q ss_pred CCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 277 LPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 277 LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
--+.+ .||+|+.- ..+ +-.++..++.+||||| .-+|+.+++..+-+. ||..+
T Consensus 158 ~~~~~-~vDav~LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~-g~~~i 216 (256)
T COG2519 158 GIDEE-DVDAVFLD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER-GFVDI 216 (256)
T ss_pred ccccc-ccCEEEEc-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-Cccch
Confidence 65555 99999862 222 2258899999999999 567777755555444 88554
No 153
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00011 Score=69.27 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=58.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccC-CCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQ-QRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~a-e~LPF~D~SFDlV~s~~~L~~w 296 (365)
.||+||||+|..++.|++..-+|++++.+ ....+.|.+ .|. +.+..+|+ +.+| ...-||.|+..-+....
T Consensus 75 ~VLEIGtGsGY~aAvla~l~~~V~siEr~--~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vtaaa~~v 151 (209)
T COG2518 75 RVLEIGTGSGYQAAVLARLVGRVVSIERI--EELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIVTAAAPEV 151 (209)
T ss_pred eEEEECCCchHHHHHHHHHhCeEEEEEEc--HHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEEeeccCCC
Confidence 35999999999999999986688765443 444454433 244 66677774 4455 55789999998877543
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ . -+.+-|||||
T Consensus 152 P-~--------~Ll~QL~~gG 163 (209)
T COG2518 152 P-E--------ALLDQLKPGG 163 (209)
T ss_pred C-H--------HHHHhcccCC
Confidence 2 1 3567899999
No 154
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.75 E-value=0.00013 Score=70.43 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=63.5
Q ss_pred eEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHHc--------CCCc-------------------------
Q 017839 224 LGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAALR--------GLVP------------------------- 268 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~R--------g~v~------------------------- 268 (365)
-+|||||-.|.++..+++. | -.|+|+++| ....+.|.+. +.+.
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~~r~iLGvDID--~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFGPRRILGVDID--PVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred eeEeccCCcchhHHHHHHhhccceeeEeecc--HHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 4699999999999999986 4 456776665 3344444321 0000
Q ss_pred -------------EEeccCCCCCCCCCccceeEEcchh----hcccChhhHHHHHHHHHhhhCCCC---CcchhhhhH
Q 017839 269 -------------LHVPLQQRLPLFDGVLDVVRCGHAV----NRWIPVIMMEFLFYDVDRVLRGGG---KASDLENVY 326 (365)
Q Consensus 269 -------------~~~g~ae~LPF~D~SFDlV~s~~~L----~~w~d~~~le~aL~Ei~RVLRPGG---~~~~l~~~~ 326 (365)
++.-..+=|-+....||+|.|..+- -+|.|+ .+..++.-+.|.|.||| .+++-++-|
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~-GL~~ff~kis~ll~pgGiLvvEPQpWksY 215 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDD-GLRRFFRKISSLLHPGGILVVEPQPWKSY 215 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccH-HHHHHHHHHHHhhCcCcEEEEcCCchHHH
Confidence 0111111233567789999987642 256664 67889999999999999 444444433
No 155
>PLN02366 spermidine synthase
Probab=97.75 E-value=0.00031 Score=69.49 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=57.8
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHc----------CCCcEEeccCCCC--CCCCCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQRL--PLFDGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~L--PF~D~SFDlV~ 288 (365)
+.|||||||.|..+..++++ ++ .|+.+++| +.+.+.+.+. ..+.++.+|+... ..+++.||+|+
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD--~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVEQIDICEID--KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 34599999999999999886 33 34444444 4455444321 1356777775321 12367899999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
+-.. .++.+... -+.++..+.|+|+|||
T Consensus 171 ~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgG 200 (308)
T PLN02366 171 VDSS-DPVGPAQELFEKPFFESVARALRPGG 200 (308)
T ss_pred EcCC-CCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 8432 23322111 1347899999999999
No 156
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.75 E-value=4.6e-05 Score=70.76 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=56.3
Q ss_pred CCCceEEEEcCccc----HHHHHHhhc-----C--CeEEEeccCCChhHHHHHHH-------------------------
Q 017839 220 SVIRLGIDVGGATG----SFAARMKLY-----N--ITILTTTMNLGAPYSEAAAL------------------------- 263 (365)
Q Consensus 220 g~iRi~LDIGCGtG----~faa~Lae~-----g--v~Vv~~~ldl~~~~~e~a~~------------------------- 263 (365)
+.+|| ..+||+|| ++|..|.+. + +.|+++++| ..+.+.|.+
T Consensus 31 ~~lrI-WSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~--~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~ 107 (196)
T PF01739_consen 31 RPLRI-WSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDIS--PSALEKARAGIYPERSLRGLPPAYLRRYFTERDG 107 (196)
T ss_dssp S-EEE-EETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES---HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-C
T ss_pred CCeEE-EECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECC--HHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCC
Confidence 56776 99999999 477777661 2 577777765 444443321
Q ss_pred ---------cCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 264 ---------RGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 264 ---------Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|..|.|...+.-..+...+.||+|+|..||..+.+ +..+.++.-+++.|+|||
T Consensus 108 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~l~~~L~pgG 169 (196)
T PF01739_consen 108 GGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRRLHRSLKPGG 169 (196)
T ss_dssp CCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-H-HHHHHHHHHHGGGEEEEE
T ss_pred CceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCH-HHHHHHHHHHHHHcCCCC
Confidence 01234444444444456789999999999987654 456789999999999999
No 157
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.74 E-value=9.1e-05 Score=70.06 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCC---CCCccceeEEcchhhcc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPL---FDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF---~D~SFDlV~s~~~L~~w 296 (365)
+.+|. |||||=...++..-.. -..|+..+++...+ .+.+.|-...|. +++.||+|.++.||...
T Consensus 51 ~~lrl-LEVGals~~N~~s~~~-~fdvt~IDLns~~~-----------~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 51 PKLRL-LEVGALSTDNACSTSG-WFDVTRIDLNSQHP-----------GILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred ccceE-EeecccCCCCcccccC-ceeeEEeecCCCCC-----------CceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 34665 9999875554433211 13344333432111 122233333343 47899999999999777
Q ss_pred cChhhHHHHHHHHHhhhCCCCC------------------cchhhhhHHHHHHhhCCceeeEEeecCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGGK------------------ASDLENVYGPLIGKLGYKKVKWATANKP 346 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG~------------------~~~l~~~~~~~l~~~gfk~i~w~v~~K~ 346 (365)
++.......++-+++.|||+|. ..-..+.+..+++.+||..++....+|+
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl 185 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKKL 185 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCeE
Confidence 7677778899999999999992 1111345788999999999988777776
No 158
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.73 E-value=8e-05 Score=71.62 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=56.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s~ 290 (365)
.|||||||+|.++..+.++. ..++.+++| +.+.+.+.+. ..+.++.+++.+ +.-.+++||+|++.
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~~~v~~veid--~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSVEKATLVDID--EKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCcceEEEEeCC--HHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 45999999999998887764 345544444 4454444321 123455555422 23336799999986
Q ss_pred chhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
... .+.+... .+.++..+.|+|+|||
T Consensus 153 ~~~-~~~~~~~l~~~ef~~~~~~~L~pgG 180 (270)
T TIGR00417 153 STD-PVGPAETLFTKEFYELLKKALNEDG 180 (270)
T ss_pred CCC-CCCcccchhHHHHHHHHHHHhCCCc
Confidence 532 2222111 2457889999999999
No 159
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.73 E-value=0.00011 Score=72.06 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=48.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++++..++++++| ..+.+.+.++ +.+.++.+|+...+++ .||+|+++--.
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~~~~V~avEiD--~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlPY 111 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQLAKKVIAIEID--PRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVPY 111 (294)
T ss_pred EEEEecCchHHHHHHHHHhCCcEEEEECC--HHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCCc
Confidence 46999999999999999988777775554 5565544331 2366788888776654 68999986543
No 160
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.68 E-value=0.00023 Score=67.41 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=56.8
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHH----HcC---CCcEEeccCCC-CC-----CCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQR-LP-----LFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~-LP-----F~D~SFDl 286 (365)
+.+||||||+|.-+..|+.. +..+++.+.| +.+.+.+. +.| .+.++.+++.. |+ .++++||+
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d--~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDID--KEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 34699999999977777653 3467765544 44444432 234 36678887643 22 12578999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.-.- .......+.++.|.|||||
T Consensus 148 VfiDa~------k~~y~~~~~~~~~ll~~GG 172 (234)
T PLN02781 148 AFVDAD------KPNYVHFHEQLLKLVKVGG 172 (234)
T ss_pred EEECCC------HHHHHHHHHHHHHhcCCCe
Confidence 987431 1233467889999999999
No 161
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.68 E-value=9.8e-05 Score=73.65 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=63.1
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc-------CC-----CcEEecc------CCCCCCCCCc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR-------GL-----VPLHVPL------QQRLPLFDGV 283 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R-------g~-----v~~~~g~------ae~LPF~D~S 283 (365)
+.+||+|||-|.-+...-..|+ ..+++++ ..-..+.+..| .. +.|+.++ ...++|.|-+
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igiDI--AevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGIDI--AEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEeeeh--hhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 4469999999987766655553 3444433 22222222221 11 3466665 3568888988
Q ss_pred cceeEEcchhh-cccChhhHHHHHHHHHhhhCCCC
Q 017839 284 LDVVRCGHAVN-RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FDlV~s~~~L~-~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
||+|-|-+++| -|...+..+.+|..+.+.|||||
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG 231 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence 99999999994 34566677889999999999999
No 162
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.68 E-value=5.6e-05 Score=75.43 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=56.7
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHcC-----------C-----CcEEeccC------CCCCC
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALRG-----------L-----VPLHVPLQ------QRLPL 279 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~Rg-----------~-----v~~~~g~a------e~LPF 279 (365)
..|||+|||-|.-..-+...++ .+++++++ ....+.+.+|= . ..++.++. +.++.
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis--~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDIS--EESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES---HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCC--HHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 3569999997765555555553 55665543 44444343321 0 12455543 23444
Q ss_pred CCCccceeEEcchhhccc-ChhhHHHHHHHHHhhhCCCC
Q 017839 280 FDGVLDVVRCGHAVNRWI-PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 280 ~D~SFDlV~s~~~L~~w~-d~~~le~aL~Ei~RVLRPGG 317 (365)
....||+|-|.+++|... ..+..+.+|..+.+.|||||
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 456999999999997544 45566789999999999999
No 163
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.66 E-value=0.00029 Score=71.06 Aligned_cols=126 Identities=11% Similarity=0.013 Sum_probs=72.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC-CCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL-PLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L-PF~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..++.++..|++++++ ..+.+.+.+ .+. +.++.++++++ +-..+.||+|+..=-....
T Consensus 236 ~vLDL~cG~G~~~l~la~~~~~v~~vE~~--~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPDTQLTGIEIE--SEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred EEEEccCCccHHHHHHhhcCCeEEEEECC--HHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 56999999999999999888888876554 455544332 233 56788876553 2122469999875322111
Q ss_pred cChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeec
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~K 361 (365)
.+.++..+ .-++|++ ....+.++...+ .||+.. ....--+.+....+=.-++|+|
T Consensus 314 -----~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~-~~~~~DmFPqT~HvE~v~ll~r 374 (374)
T TIGR02085 314 -----GKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIE-RVQLFDMFPHTSHYEVLTLLVR 374 (374)
T ss_pred -----cHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEE-EEEEeccCCCCCcEEEEEEEeC
Confidence 12333444 3479999 222333334444 588744 3333333344444444566654
No 164
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.66 E-value=0.00011 Score=77.16 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=62.2
Q ss_pred CceEEEEcCcccHHHHHHhhcC--CeEEEeccCCC--hhHHHHHHHcCC--CcEEeccCCCC--CCCCCccceeEEcchh
Q 017839 222 IRLGIDVGGATGSFAARMKLYN--ITILTTTMNLG--APYSEAAALRGL--VPLHVPLQQRL--PLFDGVLDVVRCGHAV 293 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~--~~~~e~a~~Rg~--v~~~~g~ae~L--PF~D~SFDlV~s~~~L 293 (365)
-.++||||||.|.|...+|+.+ ..++|+++... ......+..+|+ +.++.+++..+ =|+++++|.|+..+-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP- 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP- 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC-
Confidence 3678999999999999999874 56676554321 111122334454 23444454322 278999999999875
Q ss_pred hcccChh------hHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
..|.... --...+.++.|+|||||
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG 456 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNG 456 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCC
Confidence 3564210 01258999999999999
No 165
>PLN02672 methionine S-methyltransferase
Probab=97.64 E-value=0.00021 Score=80.99 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=71.8
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH---c-------------------CCCcEEeccCCCCCC
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL---R-------------------GLVPLHVPLQQRLPL 279 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~---R-------------------g~v~~~~g~ae~LPF 279 (365)
.+||+|||+|..+..++++. ..|+++++ +..+.+.+.+ + ..+.++.+|.-.. +
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~~~v~avDi--s~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLPSKVYGLDI--NPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 35999999999999998763 56776554 4555544321 1 1256777775332 2
Q ss_pred CC--CccceeEEcchhh--------------c-----------ccC-------h---hhHHHHHHHHHhhhCCCC-----
Q 017839 280 FD--GVLDVVRCGHAVN--------------R-----------WIP-------V---IMMEFLFYDVDRVLRGGG----- 317 (365)
Q Consensus 280 ~D--~SFDlV~s~~~L~--------------~-----------w~d-------~---~~le~aL~Ei~RVLRPGG----- 317 (365)
.+ ..||+|+|+=-.. | ... . .-.+..+.+..++|||||
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 33 3699999874211 0 000 0 112567888999999999
Q ss_pred CcchhhhhHH-HHHHhhCCcee-eEE
Q 017839 318 KASDLENVYG-PLIGKLGYKKV-KWA 341 (365)
Q Consensus 318 ~~~~l~~~~~-~~l~~~gfk~i-~w~ 341 (365)
.+.+..+... +++++.||+.+ .|.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCeeEEee
Confidence 3443334455 68999999874 454
No 166
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.64 E-value=0.00037 Score=71.13 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=65.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC----CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR----LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~----LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..|++.+..|+++++ ++.+.+.+.+ .|+ +.++.+++.+ +++.+++||+|+..---
T Consensus 295 ~vLDl~cG~G~~sl~la~~~~~V~~vE~--~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQAKSVVGIEV--VPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred EEEEcCCCcCHHHHHHHHhCCEEEEEEc--CHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 4699999999999999987777776544 4566555433 232 5678887653 44667789999864321
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceee
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
... ...++.++.+ |+|+| ....+.+. ...+.+.||+...
T Consensus 373 ~G~-----~~~~l~~l~~-l~~~~ivyvsc~p~tlard-~~~l~~~gy~~~~ 417 (431)
T TIGR00479 373 KGC-----AAEVLRTIIE-LKPERIVYVSCNPATLARD-LEFLCKEGYGITW 417 (431)
T ss_pred CCC-----CHHHHHHHHh-cCCCEEEEEcCCHHHHHHH-HHHHHHCCeeEEE
Confidence 111 1245555554 88988 11112121 2345667886443
No 167
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.62 E-value=0.00012 Score=70.37 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=71.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQR 276 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~ 276 (365)
+|-..+++.| |. | ||+.|.|+|.++..|++. | ..|.+. +....+.+.|.+ .|+ +.+...|..+
T Consensus 31 ~I~~~l~i~p---G~-~-VlEaGtGSG~lt~~l~r~v~p~G~v~t~--E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 31 YILMRLDIRP---GS-R-VLEAGTGSGSLTHALARAVGPTGHVYTY--EFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHTT--T---T--E-EEEE--TTSHHHHHHHHHHTTTSEEEEE--ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred HHHHHcCCCC---CC-E-EEEecCCcHHHHHHHHHHhCCCeEEEcc--ccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 4555566767 64 4 599999999999999864 2 466664 445666555443 233 5677777655
Q ss_pred CCCC---CCccceeEEcchhhcccChhhHHHHHHHHHhhh-CCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 277 LPLF---DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVL-RGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 277 LPF~---D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVL-RPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
--|. ++.||.|+--. -..| .++..+.++| |||| ..+|..+ ....+++.||..+
T Consensus 104 ~g~~~~~~~~~DavfLDl-p~Pw-------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~-~~~~L~~~gf~~i 167 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDL-PDPW-------EAIPHAKRALKKPGGRICCFSPCIEQVQK-TVEALREHGFTDI 167 (247)
T ss_dssp G--STT-TTSEEEEEEES-SSGG-------GGHHHHHHHE-EEEEEEEEEESSHHHHHH-HHHHHHHTTEEEE
T ss_pred ccccccccCcccEEEEeC-CCHH-------HHHHHHHHHHhcCCceEEEECCCHHHHHH-HHHHHHHCCCeee
Confidence 4443 46899988622 2233 3778899999 8999 5566665 4456677898654
No 168
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.62 E-value=6.4e-05 Score=70.75 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=64.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH-HHcCC-----------------CcEEeccCCCCCCCC-Ccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA-ALRGL-----------------VPLHVPLQQRLPLFD-GVL 284 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a-~~Rg~-----------------v~~~~g~ae~LPF~D-~SF 284 (365)
.+|+.|||.|.-+..|+++|..|+|+++ +....+.+ .+++. +.++++|.-.++-.+ +.|
T Consensus 40 rvLvPgCG~g~D~~~La~~G~~VvGvDl--s~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAEQGHDVVGVDL--SPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp EEEETTTTTSCHHHHHHHTTEEEEEEES---HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred eEEEeCCCChHHHHHHHHCCCeEEEEec--CHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 3599999999999999999999998655 44444433 33332 345667765665333 479
Q ss_pred ceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+|+=..+|.-+ +++..+...+-+.++|||||
T Consensus 118 D~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 118 DLIYDRTFLCAL-PPEMRERYAQQLASLLKPGG 149 (218)
T ss_dssp EEEEECSSTTTS--GGGHHHHHHHHHHCEEEEE
T ss_pred eEEEEecccccC-CHHHHHHHHHHHHHHhCCCC
Confidence 999976666444 44567789999999999999
No 169
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.56 E-value=0.00015 Score=78.83 Aligned_cols=111 Identities=20% Similarity=0.136 Sum_probs=68.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC----CCcEEeccCCC-CCCCCCccceeEEcch-
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG----LVPLHVPLQQR-LPLFDGVLDVVRCGHA- 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg----~v~~~~g~ae~-LPF~D~SFDlV~s~~~- 292 (365)
.+||+|||||.|+..++..|. .|+++ |.++.+.+.+.+ .| .+.++.+|+.. +.-..++||+|++.=-
T Consensus 541 rVLDlf~gtG~~sl~aa~~Ga~~V~~v--D~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 541 DFLNLFAYTGTASVHAALGGAKSTTTV--DMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred eEEEcCCCCCHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 459999999999999998875 46654 555666554432 23 24577777533 2112578999998421
Q ss_pred h-------hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCce
Q 017839 293 V-------NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 293 L-------~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~ 337 (365)
+ ..|.........+..+.|+|+||| ....... -...+.+.||+.
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~-~~~~~~~~g~~~ 675 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM-DEEGLAKLGLKA 675 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh-hHHHHHhCCCeE
Confidence 0 011112234567888899999999 1111111 245677777654
No 170
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00079 Score=67.74 Aligned_cols=141 Identities=19% Similarity=0.258 Sum_probs=87.8
Q ss_pred ccccCceecccCCccchHHHHh-hhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C
Q 017839 191 SEKSSSFLAFKSELDLPVTQFL-DLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G 265 (365)
Q Consensus 191 ~~e~~~W~~~~g~~~f~I~~vL-~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g 265 (365)
..++.-|+.+.. .+-.+..++ ++.....|+ ++||==||||+++....-.|+.++|.++| ..|.+-+... +
T Consensus 169 ~~~kRPf~~p~s-~~P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~Did--~~mv~gak~Nl~~y~ 243 (347)
T COG1041 169 DPEKRPFFRPGS-MDPRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGSDID--ERMVRGAKINLEYYG 243 (347)
T ss_pred CcccCCccCcCC-cCHHHHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeecchH--HHHHhhhhhhhhhhC
Confidence 344545666632 332333333 232222253 46999999999999888789999987654 5555443321 2
Q ss_pred C--CcEEec-cCCCCCCCCCccceeEEcchh--h---cccC-hhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHh
Q 017839 266 L--VPLHVP-LQQRLPLFDGVLDVVRCGHAV--N---RWIP-VIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGK 332 (365)
Q Consensus 266 ~--v~~~~g-~ae~LPF~D~SFDlV~s~~~L--~---~w~d-~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~ 332 (365)
+ ..++.. |+..+||++++||.|.|---. . .-.. ++..+.+|.++.+|||+|| ..+ ..-....+.
T Consensus 244 i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p---~~~~~~~~~ 320 (347)
T COG1041 244 IEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP---RDPRHELEE 320 (347)
T ss_pred cCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC---CcchhhHhh
Confidence 2 234555 999999999999999974311 0 0011 2346789999999999999 222 112335788
Q ss_pred hCCceee
Q 017839 333 LGYKKVK 339 (365)
Q Consensus 333 ~gfk~i~ 339 (365)
+||+.+.
T Consensus 321 ~~f~v~~ 327 (347)
T COG1041 321 LGFKVLG 327 (347)
T ss_pred cCceEEE
Confidence 8888753
No 171
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=4.3e-05 Score=69.28 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=39.0
Q ss_pred cCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 273 LQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 273 ~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.....+|.|+|.|+|.+.++++|+.-++. .++++|++|+|||||
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G 80 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGG 80 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCc
Confidence 34668999999999999999999986654 579999999999999
No 172
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.40 E-value=0.00065 Score=67.05 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCCceEEEEcCcccHHHHHHhhc-C---CeEEEeccCC-C-hhHHHHHHHcCC---CcEEeccCC---CCCCCCCcccee
Q 017839 220 SVIRLGIDVGGATGSFAARMKLY-N---ITILTTTMNL-G-APYSEAAALRGL---VPLHVPLQQ---RLPLFDGVLDVV 287 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~-g---v~Vv~~~ldl-~-~~~~e~a~~Rg~---v~~~~g~ae---~LPF~D~SFDlV 287 (365)
..+|| |||.||.|.......+. . ..|.-.+++. . +.-.+.++++|+ +.|..+++- .+.=-+-..|++
T Consensus 135 ~pvrI-lDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRI-LDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEE-EEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 56776 99999999865555443 2 2332222221 0 112356777875 478888652 232224457999
Q ss_pred EEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 288 RCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 288 ~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+..++.+.|.+.....|.-+.+.+.|||
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG 243 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGG 243 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCc
Confidence 999988888777767788999999999999
No 173
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.37 E-value=0.0011 Score=64.65 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=82.1
Q ss_pred hHHHHhhhccc---cCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHH---HHHHH-----------------
Q 017839 207 PVTQFLDLAKA---ANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYS---EAAAL----------------- 263 (365)
Q Consensus 207 ~I~~vL~~~p~---~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~---e~a~~----------------- 263 (365)
.++++-+..+. ..+.+|| |==|||.|.++-.++.+|..+-+.+++ .-|. .++..
T Consensus 40 I~~~L~~~~p~~~~~~~~~~V-LVPGsGLGRLa~Eia~~G~~~~gnE~S--~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRV-LVPGSGLGRLAWEIAKLGYAVQGNEFS--YFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHhhcccccCCCccEE-EEcCCCcchHHHHHhhccceEEEEEch--HHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 55555554441 1244665 999999999999999999887765444 2221 22211
Q ss_pred ----------cC----------------CCcEEeccCCCCCCCC---CccceeEEcchhhcccChhhHHHHHHHHHhhhC
Q 017839 264 ----------RG----------------LVPLHVPLQQRLPLFD---GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLR 314 (365)
Q Consensus 264 ----------Rg----------------~v~~~~g~ae~LPF~D---~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLR 314 (365)
|. .+.+..|+-..+.-.+ ++||+|++.+.++. ..++-..|..|+++||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLK 193 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhc
Confidence 10 0122334433443334 79999998875543 2234568999999999
Q ss_pred CCC----------Ccch--------h---hhhHHHHHHhhCCceeeEEee
Q 017839 315 GGG----------KASD--------L---ENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 315 PGG----------~~~~--------l---~~~~~~~l~~~gfk~i~w~v~ 343 (365)
||| +.++ + .+....+++++||+.++....
T Consensus 194 pgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred cCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 999 1111 1 234778999999999877663
No 174
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.37 E-value=0.00091 Score=60.40 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=50.0
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc------CCCcEEec-cCCCC--C-CCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR------GLVPLHVP-LQQRL--P-LFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R------g~v~~~~g-~ae~L--P-F~D~SFDlV~s~~ 291 (365)
.||++|||+|-.+..++.. +..|+.++.+..-+..+.-.++ +.+.+..- ..+.+ . +..+.||+|+++.
T Consensus 48 ~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasD 127 (173)
T PF10294_consen 48 RVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASD 127 (173)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES
T ss_pred eEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEec
Confidence 4599999999998888887 4677766665311111111111 11222221 12211 1 2346899999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++ .+..+.++.=+.+.|+|+|
T Consensus 128 v~Y~---~~~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 128 VLYD---EELFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp --S----GGGHHHHHHHHHHHBTT-T
T ss_pred ccch---HHHHHHHHHHHHHHhCCCC
Confidence 9964 2345678888999999999
No 175
>PRK04148 hypothetical protein; Provisional
Probab=97.35 E-value=0.0011 Score=58.47 Aligned_cols=66 Identities=14% Similarity=0.010 Sum_probs=49.1
Q ss_pred eEEEEcCcccH-HHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCC-CCccceeEEcch
Q 017839 224 LGIDVGGATGS-FAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF-DGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~-faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~-D~SFDlV~s~~~ 292 (365)
.+||||||+|. ++..|++.|..|++++++ +...+.+.+++ +.++.+|.-+-.+. -..+|+|.+.+.
T Consensus 19 kileIG~GfG~~vA~~L~~~G~~ViaIDi~--~~aV~~a~~~~-~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 19 KIVELGIGFYFKVAKKLKESGFDVIVIDIN--EKAVEKAKKLG-LNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred EEEEEEecCCHHHHHHHHHCCCEEEEEECC--HHHHHHHHHhC-CeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 35999999995 999999999999876655 45566666665 47788876554443 567899998763
No 176
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.34 E-value=0.0005 Score=71.35 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=57.5
Q ss_pred ceEEEEcCcccHHHHHHhhcC------CeEEEeccCCChhH-H-HHHHHc---CCCcEEeccCCCCCCCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLYN------ITILTTTMNLGAPY-S-EAAALR---GLVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g------v~Vv~~~ldl~~~~-~-e~a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.+|||||||+|-+....++.+ +.|.++..+..+-. . +.+.+. +.|.++.++.+.+-.+. ..|+|+|-.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSEl 266 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSEL 266 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE--
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEec
Confidence 578999999999876554432 56766555532211 1 122333 45888999998876544 999999865
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.- .+.+.+.....|.-.+|.|||||
T Consensus 267 LG-sfg~nEl~pE~Lda~~rfLkp~G 291 (448)
T PF05185_consen 267 LG-SFGDNELSPECLDAADRFLKPDG 291 (448)
T ss_dssp -B-TTBTTTSHHHHHHHGGGGEEEEE
T ss_pred cC-CccccccCHHHHHHHHhhcCCCC
Confidence 43 23344444457899999999999
No 177
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.32 E-value=0.0013 Score=65.93 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHH-HHHH--cCCCcEEecc-CCCCCCCCCccceeEEcchhhcc
Q 017839 221 VIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSE-AAAL--RGLVPLHVPL-QQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 221 ~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e-~a~~--Rg~v~~~~g~-ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+...+|+|.|.|..+..+..+.-.|-++.+| .+... .+.. .| |..+.|+ -+..|=. |+|++-++|+||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infd--lp~v~~~a~~~~~g-V~~v~gdmfq~~P~~----daI~mkWiLhdw 249 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFD--LPFVLAAAPYLAPG-VEHVAGDMFQDTPKG----DAIWMKWILHDW 249 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecC--HHHHHhhhhhhcCC-cceecccccccCCCc----CeEEEEeecccC
Confidence 36788999999999999998764334333444 33322 2111 23 4445554 3557744 499999999999
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.|. +....|+.++.-|+|||
T Consensus 250 tDe-dcvkiLknC~~sL~~~G 269 (342)
T KOG3178|consen 250 TDE-DCVKILKNCKKSLPPGG 269 (342)
T ss_pred ChH-HHHHHHHHHHHhCCCCC
Confidence 975 46789999999999999
No 178
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.28 E-value=0.0014 Score=63.82 Aligned_cols=94 Identities=26% Similarity=0.289 Sum_probs=61.6
Q ss_pred CCCceEEEEcCccc----HHHHHHhhcC-------CeEEEeccCCChhHHHHHHH---------cCC-------------
Q 017839 220 SVIRLGIDVGGATG----SFAARMKLYN-------ITILTTTMNLGAPYSEAAAL---------RGL------------- 266 (365)
Q Consensus 220 g~iRi~LDIGCGtG----~faa~Lae~g-------v~Vv~~~ldl~~~~~e~a~~---------Rg~------------- 266 (365)
+.+|| .-+||+|| ++|..|.+.+ +.|+++++|. ...+.|.+ +++
T Consensus 96 ~~irI-WSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~--~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~ 172 (268)
T COG1352 96 RPIRI-WSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL--SVLEKARAGIYPSRELLRGLPPELLRRYFERGG 172 (268)
T ss_pred CceEE-EecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH--HHHHHHhcCCCChhHhhccCCHHHHhhhEeecC
Confidence 46877 99999999 4776666643 5677777663 33332211 111
Q ss_pred -------------CcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 267 -------------VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 267 -------------v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|.|...+.-.-++..+-||+|+|..|+.-+. .+..+.++..++..|+|||
T Consensus 173 ~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 173 DGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGG 235 (268)
T ss_pred CCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCC
Confidence 2222222222232667899999999997554 4556789999999999999
No 179
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.26 E-value=0.00077 Score=68.86 Aligned_cols=91 Identities=13% Similarity=-0.013 Sum_probs=55.5
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC----CcEEeccCCCC----CCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQRL----PLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~L----PF~D~SFDlV~s~ 290 (365)
.+||+|||||.|+..++..|. .|++++ .+..+.+.+.+ .|+ +.++.+|+... .-..++||+|++.
T Consensus 223 rVLDlfsgtG~~~l~aa~~ga~~V~~VD--~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 223 RVLNCFSYTGGFAVSALMGGCSQVVSVD--TSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred eEEEeccCCCHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 459999999999887666664 666644 44556554432 232 45777776432 1135689999986
Q ss_pred chhhcccCh-------hhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPV-------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~-------~~le~aL~Ei~RVLRPGG 317 (365)
=-. .-... ...+..+.-..++|+|||
T Consensus 301 PP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG 333 (396)
T PRK15128 301 PPK-FVENKSQLMGACRGYKDINMLAIQLLNPGG 333 (396)
T ss_pred CCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 311 00011 123334556789999999
No 180
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0018 Score=60.36 Aligned_cols=112 Identities=18% Similarity=0.141 Sum_probs=62.8
Q ss_pred ceEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH---c--CCCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 223 RLGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL---R--GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~---R--g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
+.|+|+|||||.++.-.+-.| .+|+++++| ..+.+.+.+ + |.+.++.+++.++ +..||.|+.+=-+--|
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD--~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~~ 121 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDID--PEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecC--HHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCccc
Confidence 457999999999998888788 567766655 445544332 1 3477888776654 5567777776533222
Q ss_pred c---ChhhHHHHHHHHHhhhCCCCCcchhhhhHHHHHHhhCCce-eeEE
Q 017839 297 I---PVIMMEFLFYDVDRVLRGGGKASDLENVYGPLIGKLGYKK-VKWA 341 (365)
Q Consensus 297 ~---d~~~le~aL~Ei~RVLRPGG~~~~l~~~~~~~l~~~gfk~-i~w~ 341 (365)
. |..-++. ..|+-+|..-=+.-. ..+......+.+|+.. +.|+
T Consensus 122 ~rhaDr~Fl~~-Ale~s~vVYsiH~a~-~~~f~~~~~~~~G~~v~~~~~ 168 (198)
T COG2263 122 RRHADRPFLLK-ALEISDVVYSIHKAG-SRDFVEKFAADLGGTVTHIER 168 (198)
T ss_pred cccCCHHHHHH-HHHhhheEEEeeccc-cHHHHHHHHHhcCCeEEEEEE
Confidence 2 3222222 223333322222111 1233455778888654 3444
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.19 E-value=0.0008 Score=61.22 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=68.3
Q ss_pred eEEEEcCcccHHHHHHhhc--CCe---------EEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccc
Q 017839 224 LGIDVGGATGSFAARMKLY--NIT---------ILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLD 285 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~---------Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFD 285 (365)
++||--||+|++....+.. ++. +++.++| ..+.+.+. ..| .+.+...++.+||+.+++||
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~--~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDID--PKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS--HHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCC--HHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 5699999999998665443 444 6676655 44444332 223 35677889999999999999
Q ss_pred eeEEcchhhcccC-----hhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCceeeEEe
Q 017839 286 VVRCGHAVNRWIP-----VIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 286 lV~s~~~L~~w~d-----~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i~w~v 342 (365)
.|++.-=.-.-.. ......++.|+.|||+|.. ...+ +...++..++++.+-..
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~----~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRE----LEKALGLKGWRKRKLYN 171 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCC----HHHHHTSTTSEEEEEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHHhcchhhceEEEEE
Confidence 9999763211011 1223456899999999954 2222 34467776777665443
No 182
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.91 E-value=0.0022 Score=59.68 Aligned_cols=67 Identities=9% Similarity=-0.069 Sum_probs=42.2
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LPF~D~SFDlV~s~~~ 292 (365)
.+||+|||+|.++..++.++ ..|++++.+ ....+.+.+ .|. +.++.+++.+ ++-.++.||+|++.=-
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~--~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYAAGATLLEMD--RAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 45999999999998655554 567665544 444333322 232 5567776543 4334567999998654
No 183
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0033 Score=61.04 Aligned_cols=91 Identities=10% Similarity=0.081 Sum_probs=62.4
Q ss_pred cCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcE
Q 017839 194 SSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPL 269 (365)
Q Consensus 194 ~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~ 269 (365)
+|.|..... .++.+++.....++ ..+|+||+|.|.++..|++++..|++..+| ..+.+...++ +.+.+
T Consensus 9 GQnFL~d~~----v~~kIv~~a~~~~~--d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~~~~n~~v 80 (259)
T COG0030 9 GQNFLIDKN----VIDKIVEAANISPG--DNVLEIGPGLGALTEPLLERAARVTAIEID--RRLAEVLKERFAPYDNLTV 80 (259)
T ss_pred ccccccCHH----HHHHHHHhcCCCCC--CeEEEECCCCCHHHHHHHhhcCeEEEEEeC--HHHHHHHHHhcccccceEE
Confidence 445544432 35566554332222 356999999999999999999888776666 4455444443 34678
Q ss_pred EeccCCCCCCCCC-ccceeEEcch
Q 017839 270 HVPLQQRLPLFDG-VLDVVRCGHA 292 (365)
Q Consensus 270 ~~g~ae~LPF~D~-SFDlV~s~~~ 292 (365)
+.+|+-..+|++. .++.|+++--
T Consensus 81 i~~DaLk~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 81 INGDALKFDFPSLAQPYKVVANLP 104 (259)
T ss_pred EeCchhcCcchhhcCCCEEEEcCC
Confidence 8899999988876 6888888763
No 184
>PLN02476 O-methyltransferase
Probab=96.85 E-value=0.0037 Score=61.25 Aligned_cols=87 Identities=22% Similarity=0.190 Sum_probs=57.1
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCC-CC-C----CCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQR-LP-L----FDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~-LP-F----~D~SFDl 286 (365)
+.+||||+|+|..+..|++. +..+++.+.| +...+.+ .+.| .+.++.|++.. |+ + .+++||+
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d--~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERD--SNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 34599999999999999863 3456665544 4443333 2334 36777787532 33 1 2468999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.-.- .......+..+.+.|||||
T Consensus 198 VFIDa~------K~~Y~~y~e~~l~lL~~GG 222 (278)
T PLN02476 198 AFVDAD------KRMYQDYFELLLQLVRVGG 222 (278)
T ss_pred EEECCC------HHHHHHHHHHHHHhcCCCc
Confidence 987432 2234467888899999999
No 185
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.85 E-value=0.00081 Score=63.88 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=73.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.+||+|.|.|..+.+|+...-.|.++.+ +..|.......+. .+ .+..+-+ --|-.||+|.|...|+.-.+ .-
T Consensus 115 ~lLDlGAGdGeit~~m~p~feevyATEl--S~tMr~rL~kk~y-nV-l~~~ew~-~t~~k~dli~clNlLDRc~~---p~ 186 (288)
T KOG3987|consen 115 TLLDLGAGDGEITLRMAPTFEEVYATEL--SWTMRDRLKKKNY-NV-LTEIEWL-QTDVKLDLILCLNLLDRCFD---PF 186 (288)
T ss_pred eEEeccCCCcchhhhhcchHHHHHHHHh--hHHHHHHHhhcCC-ce-eeehhhh-hcCceeehHHHHHHHHhhcC---hH
Confidence 4599999999999999875433333232 3345444444432 11 1211211 13557999999999854333 23
Q ss_pred HHHHHHHhhhCC-CC----------------------Ccc------------hhhhhHHHHHHhhCCceeeEEeecCCC
Q 017839 304 FLFYDVDRVLRG-GG----------------------KAS------------DLENVYGPLIGKLGYKKVKWATANKPN 347 (365)
Q Consensus 304 ~aL~Ei~RVLRP-GG----------------------~~~------------~l~~~~~~~l~~~gfk~i~w~v~~K~d 347 (365)
..|.+++-||+| .| ..+ +-...+.+++++.||..-.|.....+=
T Consensus 187 kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlPYLC 265 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLPYLC 265 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCCeec
Confidence 689999999999 67 001 111135678999999999998777653
No 186
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.014 Score=55.04 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=77.8
Q ss_pred ccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC---
Q 017839 204 LDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL--- 277 (365)
Q Consensus 204 ~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L--- 277 (365)
..|-+.++.+--....+.. .|+|+|+-.|+++..++++ + ..|++++++...+. .| +.+++++...=
T Consensus 29 Aa~KL~el~~k~~i~~~~~-~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~------~~-V~~iq~d~~~~~~~ 100 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGM-VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------PG-VIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHHHHHHhcCeecCCC-EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC------CC-ceEEeeeccCccHH
Confidence 4555555554211111222 4699999999999998876 2 34776655421111 12 45555543221
Q ss_pred -----CCCCCccceeEEcchh---hcccChh----hHHHHHHH-HHhhhCCCC-------CcchhhhhHHHHHHhhCCce
Q 017839 278 -----PLFDGVLDVVRCGHAV---NRWIPVI----MMEFLFYD-VDRVLRGGG-------KASDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 278 -----PF~D~SFDlV~s~~~L---~~w~d~~----~le~aL~E-i~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~ 337 (365)
-+....+|+|.|-.+= -+|.-+. .+.+...| ..+||+||| .+++.++ +..+++++ |++
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~-~l~~~~~~-F~~ 178 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFED-LLKALRRL-FRK 178 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHH-HHHHHHHh-hce
Confidence 1334447888854322 1222111 22233334 456999999 4555444 44455543 666
Q ss_pred eeEEeecCCCCCCCceEEEEeeecC
Q 017839 338 VKWATANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 338 i~w~v~~K~d~~~~~~y~sall~KP 362 (365)
++...-+-.-+...|+|+-+.--|+
T Consensus 179 v~~~KP~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 179 VKIFKPKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred eEEecCccccCCCceEEEEEecccc
Confidence 6543222221245699997765443
No 187
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.78 E-value=0.0048 Score=60.60 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=52.9
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-------CCcEEeccCCCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-------LVPLHVPLQQRLPL 279 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-------~v~~~~g~ae~LPF 279 (365)
.++++..-++..++ .++|+||-|||.++..|.+.|.+|++..+| ..|.....+|+ ...+..||.-..++
T Consensus 46 v~~~I~~ka~~k~t--D~VLEvGPGTGnLT~~lLe~~kkVvA~E~D--prmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKADLKPT--DVVLEVGPGTGNLTVKLLEAGKKVVAVEID--PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccCCCCC--CEEEEeCCCCCHHHHHHHHhcCeEEEEecC--cHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 56666654333223 468999999999999999999999987776 45655555552 23466676544332
Q ss_pred CCCccceeEEc
Q 017839 280 FDGVLDVVRCG 290 (365)
Q Consensus 280 ~D~SFDlV~s~ 290 (365)
+ .||+++++
T Consensus 122 P--~fd~cVsN 130 (315)
T KOG0820|consen 122 P--RFDGCVSN 130 (315)
T ss_pred c--ccceeecc
Confidence 2 67888873
No 188
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.75 E-value=0.018 Score=60.24 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHH----HHHcCCC--cEEeccCCCCC-CCCCccceeE----E
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEA----AALRGLV--PLHVPLQQRLP-LFDGVLDVVR----C 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~----a~~Rg~v--~~~~g~ae~LP-F~D~SFDlV~----s 289 (365)
.|||+++|.|.=+..+++. ...+++.+++ ....+. +..-|+. .+...++..++ ...+.||.|. |
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~--~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGAIVANEYS--ASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 3599999999988787764 1356654443 333322 2233543 33445666653 4456899999 7
Q ss_pred cch--h-------hcccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhC
Q 017839 290 GHA--V-------NRWIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLG 334 (365)
Q Consensus 290 ~~~--L-------~~w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~g 334 (365)
+.. + ..|... ......|.+..+.||||| ..+|.+++...++++..
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 642 2 223221 011457888999999999 34555565666777653
No 189
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.74 E-value=0.0087 Score=56.85 Aligned_cols=87 Identities=24% Similarity=0.219 Sum_probs=58.0
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEe-ccC-CCCC-CCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHV-PLQ-QRLP-LFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~-g~a-e~LP-F~D~SFDlV~s 289 (365)
+.+|+||.++|.-+.+|+.. +.++++++.| ..+.+.|++ -|. +.++. +++ +-|- +.+++||+|+.
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~--~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTIERD--EERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEEeCC--HHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 34599999999999999863 3467765544 555554432 233 44566 343 2222 67899999997
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-. +. .....++.++.+.|||||
T Consensus 139 Da----dK--~~yp~~le~~~~lLr~GG 160 (219)
T COG4122 139 DA----DK--ADYPEYLERALPLLRPGG 160 (219)
T ss_pred eC----Ch--hhCHHHHHHHHHHhCCCc
Confidence 43 22 223468999999999999
No 190
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.71 E-value=0.0072 Score=61.07 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=54.8
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
||+||||||+|.+....+..|+ .|.++ +. ..|.|.+.. .. .+.++-|-.|.+-.| +..|++++--.-.
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~~vYAv--EA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAKKVYAV--EA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcceEEEE--eh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 7899999999998777776674 34332 21 234444332 11 244555667776654 4789999754322
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-..+...+| ...-..|-|||.|
T Consensus 255 mL~NERMLE-sYl~Ark~l~P~G 276 (517)
T KOG1500|consen 255 MLVNERMLE-SYLHARKWLKPNG 276 (517)
T ss_pred hhhhHHHHH-HHHHHHhhcCCCC
Confidence 223334454 3445669999999
No 191
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.69 E-value=0.0034 Score=63.38 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=49.8
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
..+|||||++|.|+..|.++|..|++++ . .++...+...+.|..+.+++-+..-..+.+|+|+|--+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD--~-g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVD--N-GPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEe--c-hhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 3579999999999999999999888754 2 34555555666777777766554223778999999654
No 192
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.67 E-value=0.0051 Score=57.57 Aligned_cols=87 Identities=22% Similarity=0.159 Sum_probs=58.1
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCC-CC-----CCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQR-LP-----LFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~-LP-----F~D~SFDl 286 (365)
+.+|+||||+|.-+.+|++. +..+++++.| ....+.+ ...| .+.++.|++.. |+ -..+.||+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 34699999999999999874 5678776655 4444333 2223 47788887532 22 12468999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.-..= ......+..+.+.|||||
T Consensus 125 VFiDa~K------~~y~~y~~~~~~ll~~gg 149 (205)
T PF01596_consen 125 VFIDADK------RNYLEYFEKALPLLRPGG 149 (205)
T ss_dssp EEEESTG------GGHHHHHHHHHHHEEEEE
T ss_pred EEEcccc------cchhhHHHHHhhhccCCe
Confidence 9975421 223457788889999999
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0094 Score=56.65 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=54.9
Q ss_pred EEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHH--------H--------HHcCCCcEEeccCCCCCCCCCcc
Q 017839 225 GIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEA--------A--------ALRGLVPLHVPLQQRLPLFDGVL 284 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~--------a--------~~Rg~v~~~~g~ae~LPF~D~SF 284 (365)
.||||.|||.+++.++.. |..++| ++......+. + .++|.+.+++|+....-=..+.|
T Consensus 86 ~LdvGsGSGYLt~~~~~mvg~~g~~~~G--IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 86 FLDVGSGSGYLTACFARMVGATGGNVHG--IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred eeecCCCccHHHHHHHHHhcCCCccccc--hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 499999999988887743 333333 3322222221 1 23566778899887765578889
Q ss_pred ceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|.||+.-... ...+++-..|+|||
T Consensus 164 DaIhvGAaa~---------~~pq~l~dqL~~gG 187 (237)
T KOG1661|consen 164 DAIHVGAAAS---------ELPQELLDQLKPGG 187 (237)
T ss_pred ceEEEccCcc---------ccHHHHHHhhccCC
Confidence 9999985432 23467888899999
No 194
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.01 Score=62.12 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=66.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHHHcC-----CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
++|-+|||-=.+...+-+-|.. |.. .|.+....+.+..++ ...+...+...+.|+|++||+|.--..+++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~--iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITN--IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCcee--ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 3499999999999999887743 333 444444444444443 24567778999999999999999888776655
Q ss_pred Chhh-------HHHHHHHHHhhhCCCC
Q 017839 298 PVIM-------MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~-------le~aL~Ei~RVLRPGG 317 (365)
.++. ....+.|+.|||+|||
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~g 155 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGG 155 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCC
Confidence 3321 2245789999999999
No 195
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.35 E-value=0.0089 Score=55.11 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=71.1
Q ss_pred cchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEE-eccCCChhHHHHHHHc-CCCcEEeccCCCCC----
Q 017839 205 DLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILT-TTMNLGAPYSEAAALR-GLVPLHVPLQQRLP---- 278 (365)
Q Consensus 205 ~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~-~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LP---- 278 (365)
+++...|.+.....+| + -||++|-|||-++..+.++|+.-.. ..++.+..+.....++ .-+.++.|++..|-
T Consensus 34 s~lA~~M~s~I~pesg-l-pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 34 SILARKMASVIDPESG-L-PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHHhccCcccC-C-eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 3344455443322224 3 3599999999999999999853211 1233344454333322 22457778876664
Q ss_pred -CCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 279 -LFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 279 -F~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+..||.|+|.--+-++..... -..|.++.--|++||
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~-iaile~~~~rl~~gg 150 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRR-IAILESLLYRLPAGG 150 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHH-HHHHHHHHHhcCCCC
Confidence 78999999999987767664433 357888999999999
No 196
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.28 E-value=0.0075 Score=60.25 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=41.9
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----Hc-CC---CcEEe-ccCCCC----CCCCCccceeE
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LR-GL---VPLHV-PLQQRL----PLFDGVLDVVR 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~R-g~---v~~~~-g~ae~L----PF~D~SFDlV~ 288 (365)
.+||||||+|-.+..|+.+ +..++++++| ..+.+.++ .. ++ +.+.. .+...+ -..++.||+|+
T Consensus 117 ~vLDIGtGag~I~~lLa~~~~~~~~~atDId--~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 117 RVLDIGVGANCIYPLIGVHEYGWRFVGSDID--PQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred eEEEecCCccHHHHHHHhhCCCCEEEEEeCC--HHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 4599999999888887664 6778877665 33433332 22 22 33332 222222 23577999999
Q ss_pred Ecchh
Q 017839 289 CGHAV 293 (365)
Q Consensus 289 s~~~L 293 (365)
|+==+
T Consensus 195 cNPPf 199 (321)
T PRK11727 195 CNPPF 199 (321)
T ss_pred eCCCC
Confidence 98654
No 197
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.15 E-value=0.021 Score=57.54 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=66.6
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CC-CC--------------CC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LP-LF--------------DG 282 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LP-F~--------------D~ 282 (365)
+||++||+|.|+..+++....|++++. +..+.+.+.+ .|+ +.++.+++.+ ++ +. ..
T Consensus 210 vLDl~~G~G~~sl~la~~~~~v~~vE~--~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 210 LLELYCGNGNFTLALARNFRRVLATEI--SKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred EEEEeccccHHHHHHHhhCCEEEEEEC--CHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 699999999999999876667776554 4556554433 343 5677777654 22 10 22
Q ss_pred ccceeEEcchhhcccChhh-HHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEE
Q 017839 283 VLDVVRCGHAVNRWIPVIM-MEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYL 355 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~-le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~ 355 (365)
.||+|+.-=- ... .+.++ ..+.+|++ ....+.+.+..+. . ||+..+. ..--+.+....|=.
T Consensus 288 ~~D~v~lDPP------R~G~~~~~l---~~l~~~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v-~~~DmFPqT~HvE~ 355 (362)
T PRK05031 288 NFSTIFVDPP------RAGLDDETL---KLVQAYERILYISCNPETLCENLETLS-Q-THKVERF-ALFDQFPYTHHMEC 355 (362)
T ss_pred CCCEEEECCC------CCCCcHHHH---HHHHccCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEE-EEcccCCCCCcEEE
Confidence 5899876321 111 11233 33344777 2333334344444 3 8874433 23223344444444
Q ss_pred EEeeec
Q 017839 356 TALLQK 361 (365)
Q Consensus 356 sall~K 361 (365)
-++|+|
T Consensus 356 v~lL~r 361 (362)
T PRK05031 356 GVLLEK 361 (362)
T ss_pred EEEEEe
Confidence 566654
No 198
>PLN02823 spermine synthase
Probab=96.13 E-value=0.018 Score=57.86 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=57.1
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
+.+|-||+|.|..+..+.+. ++ .++.+++| +...+.+.+. ..+.++.+|+.+ |.-.++.||+|++
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD--~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDID--QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 44699999999999988875 33 44444444 5566655431 134567776543 3445789999997
Q ss_pred cchhhcccC--hh--hHHHHHH-HHHhhhCCCC
Q 017839 290 GHAVNRWIP--VI--MMEFLFY-DVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d--~~--~le~aL~-Ei~RVLRPGG 317 (365)
-. ...+.. .. --..++. .+.|.|+|||
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~G 214 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGG 214 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCc
Confidence 52 222210 00 0123566 7899999999
No 199
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.77 E-value=0.03 Score=51.47 Aligned_cols=88 Identities=10% Similarity=-0.035 Sum_probs=48.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCC-CC-C-CCC-ccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR-LP-L-FDG-VLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~-LP-F-~D~-SFDlV~s~~ 291 (365)
.+||++||+|.++..++.+|. .|+.++.| ....+.+.+ .+ .+.++.+++.+ +. + ..+ .||+|+.-=
T Consensus 52 ~vLDLfaGsG~lglea~srga~~v~~vE~~--~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAKVAFLEEDD--RKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 469999999999999999986 56654444 444433321 22 24567777633 32 2 223 367776532
Q ss_pred hhhcccChhhHHHHHHHH--HhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDV--DRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei--~RVLRPGG 317 (365)
-+.. . ..+..+.-+ ..+|++||
T Consensus 130 Py~~-~---~~~~~l~~l~~~~~l~~~~ 153 (189)
T TIGR00095 130 PFFN-G---ALQALLELCENNWILEDTV 153 (189)
T ss_pred CCCC-C---cHHHHHHHHHHCCCCCCCe
Confidence 2211 1 111222222 45788888
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.64 E-value=0.012 Score=54.20 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=51.6
Q ss_pred EEEEcCcccHHHHHHhh--cCCeEEEeccCCChh---HHHH-HHHcCC--CcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 225 GIDVGGATGSFAARMKL--YNITILTTTMNLGAP---YSEA-AALRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~---~~e~-a~~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
++|||+|.|.-+.-|+= -...++- +|.... +.+. +.+-|+ +.++.+.++. +-..+.||+|++.-+- .
T Consensus 52 ~lDiGSGaGfPGipLaI~~p~~~~~L--vEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~-~- 126 (184)
T PF02527_consen 52 VLDIGSGAGFPGIPLAIARPDLQVTL--VESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA-P- 126 (184)
T ss_dssp EEEETSTTTTTHHHHHHH-TTSEEEE--EESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS-S-
T ss_pred EEecCCCCCChhHHHHHhCCCCcEEE--EeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc-C-
Confidence 69999999986666542 2344432 232222 2222 333354 4566677777 6788999999997753 2
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
+...+.-+.+.|++||
T Consensus 127 -----l~~l~~~~~~~l~~~G 142 (184)
T PF02527_consen 127 -----LDKLLELARPLLKPGG 142 (184)
T ss_dssp -----HHHHHHHHGGGEEEEE
T ss_pred -----HHHHHHHHHHhcCCCC
Confidence 3357778889999999
No 201
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.56 E-value=0.05 Score=55.88 Aligned_cols=92 Identities=20% Similarity=0.086 Sum_probs=60.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC----CcEEeccC-CCCCC---CCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQ-QRLPL---FDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~a-e~LPF---~D~SFDlV~s~ 290 (365)
.+||+=|=||.|+...+..|+ .|++++ ++....+.+.+ .|+ +.++++|+ +-|.. ....||+|+.-
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~~vt~VD--~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGASEVTSVD--LSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCCceEEEe--ccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 469999999999999998887 777644 44555554433 243 45777774 22332 23499999852
Q ss_pred c---hh---hcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 H---AV---NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~---~L---~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
= +- ..|.-..+....+....++|+|||
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG 330 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGG 330 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCC
Confidence 1 10 112222334567889999999999
No 202
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.15 Score=49.27 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=52.7
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHH-HHHHcCCCcEEec-cCCCCC--CCCCccceeEEcchhhccc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSE-AAALRGLVPLHVP-LQQRLP--LFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e-~a~~Rg~v~~~~g-~ae~LP--F~D~SFDlV~s~~~L~~w~ 297 (365)
+++||||.-||.|+..+.++|+ .|.++ |.+-.+.. ..+..-.+-.+.. ++..+- -..+..|+++|--++.-
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk~Vyav--DVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFIS-- 156 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAKHVYAV--DVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFIS-- 156 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCcEEEEE--EccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhh--
Confidence 6789999999999999999984 44443 32211111 1111112222222 333331 11226789998776642
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+..+|-.+..+|+|||
T Consensus 157 ----L~~iLp~l~~l~~~~~ 172 (245)
T COG1189 157 ----LKLILPALLLLLKDGG 172 (245)
T ss_pred ----HHHHHHHHHHhcCCCc
Confidence 3468899999999998
No 203
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.52 E-value=0.029 Score=57.19 Aligned_cols=85 Identities=19% Similarity=0.127 Sum_probs=54.3
Q ss_pred eEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||++||+|.++.+++.. ++ .|++.++| ....+.+.+ .++ +.++.+++..+....+.||+|...= .
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din--~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLNDIN--PDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 4599999999999999764 43 56665544 445444432 233 3367777765432256799998742 1
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
. ....++....+.++|||
T Consensus 135 -G---s~~~~l~~al~~~~~~g 152 (382)
T PRK04338 135 -G---SPAPFLDSAIRSVKRGG 152 (382)
T ss_pred -C---CcHHHHHHHHHHhcCCC
Confidence 1 11246667678899999
No 204
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.49 E-value=0.02 Score=53.61 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=51.5
Q ss_pred ceEEEEcCcccHHHHHHhh--cCCeEEEeccCCChhHHHH----HHHc---CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKL--YNITILTTTMNLGAPYSEA----AALR---GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~~~e~----a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+|||+-||.|.|+..+++ ++..|++.++|. ...+. +... +.+..+.+|+..++- .+.||-|++..-
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np--~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNP--DAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-H--HHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCH--HHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 3579999999999999998 567788777663 22222 2222 235567788877765 899998888652
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.. .. .+|.+..+.+|+||
T Consensus 179 ----~~-~~-~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 179 ----ES-SL-EFLDAALSLLKEGG 196 (200)
T ss_dssp ----SS-GG-GGHHHHHHHEEEEE
T ss_pred ----HH-HH-HHHHHHHHHhcCCc
Confidence 11 11 36777888888887
No 205
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=95.22 E-value=0.054 Score=52.19 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=56.1
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCC-CCCC------CCCccc
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQ-RLPL------FDGVLD 285 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae-~LPF------~D~SFD 285 (365)
+.+|+||+++|.-+.+|++. +..+++.+.| ....+.+ ...| .+.++.|++. -||- .+++||
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 34699999999988888763 4567765554 3333333 2334 3677888653 2332 146999
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|+.-.- . ......+..+.+.|||||
T Consensus 159 ~iFiDad----K--~~Y~~y~~~~l~ll~~GG 184 (247)
T PLN02589 159 FIFVDAD----K--DNYINYHKRLIDLVKVGG 184 (247)
T ss_pred EEEecCC----H--HHhHHHHHHHHHhcCCCe
Confidence 9997542 1 122346667789999999
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.19 E-value=0.035 Score=54.90 Aligned_cols=83 Identities=14% Similarity=0.046 Sum_probs=53.0
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCC-
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLP- 278 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LP- 278 (365)
+++++++.....+|. ++||.+||.|..+..+++.. ..|++. |.+..+.+.+.++ +.+.++.++...+.
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~Vigi--D~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAI--DRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE 82 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEE--cCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence 456666643222243 57999999999999999873 678875 4456676666543 23566776644432
Q ss_pred C-CCC--ccceeEEcchh
Q 017839 279 L-FDG--VLDVVRCGHAV 293 (365)
Q Consensus 279 F-~D~--SFDlV~s~~~L 293 (365)
. .++ +||.|+.-..+
T Consensus 83 ~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHcCCCccCEEEECCCc
Confidence 1 122 79999976654
No 207
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.18 E-value=0.056 Score=51.82 Aligned_cols=92 Identities=11% Similarity=0.120 Sum_probs=58.5
Q ss_pred ccCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCc
Q 017839 193 KSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVP 268 (365)
Q Consensus 193 e~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~ 268 (365)
-+|+|..... .++.+++......+ ..|||||.|+|.++..|.+++..++..+.| ..+.+...++ +.+.
T Consensus 8 ~gQnFL~~~~----~~~~Iv~~~~~~~~--~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d--~~~~~~L~~~~~~~~~~~ 79 (262)
T PF00398_consen 8 LGQNFLVDPN----IADKIVDALDLSEG--DTVLEIGPGPGALTRELLKRGKRVIAVEID--PDLAKHLKERFASNPNVE 79 (262)
T ss_dssp CTSSEEEHHH----HHHHHHHHHTCGTT--SEEEEESSTTSCCHHHHHHHSSEEEEEESS--HHHHHHHHHHCTTCSSEE
T ss_pred CCcCeeCCHH----HHHHHHHhcCCCCC--CEEEEeCCCCccchhhHhcccCcceeecCc--HhHHHHHHHHhhhcccce
Confidence 4555655432 34444443221113 456999999999999999998777765554 5566655552 3467
Q ss_pred EEeccCCCCCCCC---CccceeEEcch
Q 017839 269 LHVPLQQRLPLFD---GVLDVVRCGHA 292 (365)
Q Consensus 269 ~~~g~ae~LPF~D---~SFDlV~s~~~ 292 (365)
++.+|+..+.+++ +.-..|+++--
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred eeecchhccccHHhhcCCceEEEEEec
Confidence 8888988887666 55666776543
No 208
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.92 E-value=0.054 Score=49.30 Aligned_cols=65 Identities=15% Similarity=0.015 Sum_probs=38.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCC----CCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQ----RLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae----~LPF~D~SFDlV~s~~ 291 (365)
+++|+.||.|..+..+++.+-.|+++++| ....+.++. -| .+.++.+|.. ++..... ||+|+++=
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid--~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDID--PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES---HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEECC
Confidence 57999999999999999998888876665 444444322 24 3678888743 3332222 89999765
No 209
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.50 E-value=0.73 Score=43.27 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=70.5
Q ss_pred cCceecccCCccchHHHHhhhcc-ccCCCCceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhH--HHHHHHcC-C
Q 017839 194 SSSFLAFKSELDLPVTQFLDLAK-AANSVIRLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPY--SEAAALRG-L 266 (365)
Q Consensus 194 ~~~W~~~~g~~~f~I~~vL~~~p-~~~g~iRi~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~--~e~a~~Rg-~ 266 (365)
.+.|+.|..++=.++|.+..-.. ..+....|+|+||||+|-....|++. ++..+.+++|..+-. .+.+...+ .
T Consensus 15 f~dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 15 FSDVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH 94 (209)
T ss_pred hhhccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence 33566665543223443332111 11122467899999999988888875 355555566632211 12233222 2
Q ss_pred CcEEecc-CCCCCCCCCccceeEEcchhh--------------ccc----ChhhHHHHHHHHHhhhCCCC-------Ccc
Q 017839 267 VPLHVPL-QQRLPLFDGVLDVVRCGHAVN--------------RWI----PVIMMEFLFYDVDRVLRGGG-------KAS 320 (365)
Q Consensus 267 v~~~~g~-ae~LPF~D~SFDlV~s~~~L~--------------~w~----d~~~le~aL~Ei~RVLRPGG-------~~~ 320 (365)
+..++.+ ...|- .++.|+++-+--.. -|. ..+-.+..+..+..+|.|.| ..+
T Consensus 95 ~~~V~tdl~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 95 IDVVRTDLLSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred cceeehhHHhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 3444443 12221 26666665443211 122 11124566777888889999 222
Q ss_pred hhhhhHHHHHHhhCCc
Q 017839 321 DLENVYGPLIGKLGYK 336 (365)
Q Consensus 321 ~l~~~~~~~l~~~gfk 336 (365)
...+ ...+++.-||.
T Consensus 173 ~p~e-i~k~l~~~g~~ 187 (209)
T KOG3191|consen 173 KPKE-ILKILEKKGYG 187 (209)
T ss_pred CHHH-HHHHHhhcccc
Confidence 2233 33477777775
No 210
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.45 E-value=0.84 Score=46.09 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHH----HHHcCCC--cEEeccCCCC
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEA----AALRGLV--PLHVPLQQRL 277 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~----a~~Rg~v--~~~~g~ae~L 277 (365)
...+|+..+ |. .|||++.+.|.=+.+|++. |..|+..++ ++...+. +..-|.. .....++.++
T Consensus 148 ~a~~L~p~p---ge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~--~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 148 PALVLDPKP---GE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDV--SPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred HHHHcCCCC---cC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcC--CHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 445555555 53 4599999999866666664 345565444 4433332 3333543 3555666655
Q ss_pred C---CCCCccceeE----Ecc--hhh-------cccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhH
Q 017839 278 P---LFDGVLDVVR----CGH--AVN-------RWIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVY 326 (365)
Q Consensus 278 P---F~D~SFDlV~----s~~--~L~-------~w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~ 326 (365)
+ +..+.||.|. |+. +++ .|... ......|....++||||| ..++.+++.
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV 300 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV 300 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence 4 2233599997 333 331 12211 112357889999999999 345555556
Q ss_pred HHHHHhh
Q 017839 327 GPLIGKL 333 (365)
Q Consensus 327 ~~~l~~~ 333 (365)
..++++.
T Consensus 301 ~~~L~~~ 307 (355)
T COG0144 301 ERFLERH 307 (355)
T ss_pred HHHHHhC
Confidence 6666664
No 211
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.44 E-value=0.15 Score=49.43 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=46.4
Q ss_pred ceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH--cCCCc-----EEec-cCCCCCCCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL--RGLVP-----LHVP-LQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~--Rg~v~-----~~~g-~ae~LPF~D~SFDlV~s~~ 291 (365)
+.+||+|||+|+-.-...+. + .+++ .+|.+..|.+.+.. ++... .... ..+.+++... |+|++++
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~--~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--DLvi~s~ 110 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYT--CVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD--DLVIASY 110 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeee--eecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC--cEEEEeh
Confidence 34699999999855444432 2 2233 35555666554321 11111 1111 1233454433 9999999
Q ss_pred hhhcccChhhHHHHHHHHHhhh
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVL 313 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVL 313 (365)
+|....+ .....++..+.+.+
T Consensus 111 ~L~EL~~-~~r~~lv~~LW~~~ 131 (274)
T PF09243_consen 111 VLNELPS-AARAELVRSLWNKT 131 (274)
T ss_pred hhhcCCc-hHHHHHHHHHHHhc
Confidence 9987766 44455555554443
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.38 E-value=0.18 Score=55.31 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=39.8
Q ss_pred eEEEeccCCChhHHHHHH----HcCC---CcEEeccCCCCCCC--CCccceeEEcchh-hcccChhhHHHHHHHH---Hh
Q 017839 245 TILTTTMNLGAPYSEAAA----LRGL---VPLHVPLQQRLPLF--DGVLDVVRCGHAV-NRWIPVIMMEFLFYDV---DR 311 (365)
Q Consensus 245 ~Vv~~~ldl~~~~~e~a~----~Rg~---v~~~~g~ae~LPF~--D~SFDlV~s~~~L-~~w~d~~~le~aL~Ei---~R 311 (365)
.++++++| ..+.+.+. ..|+ +.+..+++.+++.+ +++||+|+++==. ..+.+...++....++ .|
T Consensus 258 ~i~G~Did--~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 258 KFYGSDID--PRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred eEEEEECC--HHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 45665554 45544433 3344 66888888888655 3689999998422 1222223333444444 44
Q ss_pred hhCCCC
Q 017839 312 VLRGGG 317 (365)
Q Consensus 312 VLRPGG 317 (365)
...||+
T Consensus 336 ~~~~g~ 341 (702)
T PRK11783 336 QQFGGW 341 (702)
T ss_pred HhCCCC
Confidence 444887
No 213
>PRK13699 putative methylase; Provisional
Probab=94.37 E-value=0.09 Score=49.79 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=43.6
Q ss_pred EEeccCCCC--CCCCCccceeEEcc--h--hhcccC--------hhhHHHHHHHHHhhhCCCC------CcchhhhhHHH
Q 017839 269 LHVPLQQRL--PLFDGVLDVVRCGH--A--VNRWIP--------VIMMEFLFYDVDRVLRGGG------KASDLENVYGP 328 (365)
Q Consensus 269 ~~~g~ae~L--PF~D~SFDlV~s~~--~--L~~w~d--------~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~ 328 (365)
++.+|+-++ .++|+++|+|++.= . ..+... .+-.+..+.|++||||||| ...... .+..
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~-~~~~ 82 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVD-RFMA 82 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHH-HHHH
Confidence 344544322 35677888877761 0 000000 0123468999999999999 123233 3566
Q ss_pred HHHhhCCceeeEEeecCC
Q 017839 329 LIGKLGYKKVKWATANKP 346 (365)
Q Consensus 329 ~l~~~gfk~i~w~v~~K~ 346 (365)
+++..||+...+.+=.|.
T Consensus 83 al~~~GF~l~~~IiW~K~ 100 (227)
T PRK13699 83 AWKNAGFSVVGHLVFTKN 100 (227)
T ss_pred HHHHCCCEEeeEEEEECC
Confidence 788999976544443443
No 214
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.25 E-value=0.078 Score=51.53 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=51.3
Q ss_pred ccceeEEcchhhccc-ChhhHHHHHHHHHhhhCCCC--------------Ccch-------hhhhHHHHHHhhCCceeeE
Q 017839 283 VLDVVRCGHAVNRWI-PVIMMEFLFYDVDRVLRGGG--------------KASD-------LENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 283 SFDlV~s~~~L~~w~-d~~~le~aL~Ei~RVLRPGG--------------~~~~-------l~~~~~~~l~~~gfk~i~w 340 (365)
.||+|++.+|++-.. +.+....+++.+-+.||||| .++. .++.....+++.||....+
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 599999999997655 44566789999999999999 1111 1345667999999988888
Q ss_pred EeecCCC-CCCCceEEEEeeec
Q 017839 341 ATANKPN-SKNGEVYLTALLQK 361 (365)
Q Consensus 341 ~v~~K~d-~~~~~~y~sall~K 361 (365)
.. ... .+.+.+++ ++-+|
T Consensus 238 ~~--~~~~~d~~~~~f-~~a~K 256 (256)
T PF01234_consen 238 EK--QSKVSDYEGMFF-LVARK 256 (256)
T ss_dssp EG---TTTB---EEEE-EEEEE
T ss_pred cc--ccCcCCCCcEEE-EEEeC
Confidence 72 122 25556665 55555
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.07 E-value=0.25 Score=48.64 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=57.4
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
|.||=||.|.|..++.+.++. ..++-+++| +...+.+++. -++.++.+|+-+ +.=..++||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID--~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEID--PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcC--HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 567999999999999999885 344444454 5555555432 123556666533 3322338999997
Q ss_pred cchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
-.. ..-.+.+. -+.+++.++|.|+|+|
T Consensus 156 D~t-dp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 156 DST-DPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred cCC-CCCCcccccCCHHHHHHHHHhcCCCc
Confidence 442 11011000 1358999999999999
No 216
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=93.61 E-value=0.16 Score=50.32 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=41.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH-------cCCCcEE----ecc-CCCCCCCCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL-------RGLVPLH----VPL-QQRLPLFDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~-------Rg~v~~~----~g~-ae~LPF~D~SFDlV~s 289 (365)
++||+|||+|-.+..|+.. ..+|++ +|.+......+.+ .|.+..+ .++ ....|..++..|+++|
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~A--iD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTA--IDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEE--EeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 4599999999999888764 355554 4544444333322 2433333 232 3345667899999999
Q ss_pred cc
Q 017839 290 GH 291 (365)
Q Consensus 290 ~~ 291 (365)
+=
T Consensus 229 NP 230 (328)
T KOG2904|consen 229 NP 230 (328)
T ss_pred CC
Confidence 75
No 217
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.61 E-value=0.93 Score=43.92 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=75.2
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCC--CCccceeEEcchhhcc------
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF--DGVLDVVRCGHAVNRW------ 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~--D~SFDlV~s~~~L~~w------ 296 (365)
++|+-||.|.+..-+.+.|..++. ..|.+....+.....-.-..+.+|.+.+.-. ...+|+++.+.-=..+
T Consensus 3 v~dLFsG~Gg~~~gl~~~G~~~v~-a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 3 VIDLFAGIGGFRLGLEKAGFEIVA-ANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred EEEEccCcchHHHHHHHcCCEEEE-EEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 499999999998888888877643 3444444444333321112455666665432 3569999976621111
Q ss_pred --cChhhHHHHHHHHHhhhCCCC-------------C--cchhhhhHHHHHHhhCCceeeEEeecCCC---C-CCCceEE
Q 017839 297 --IPVIMMEFLFYDVDRVLRGGG-------------K--ASDLENVYGPLIGKLGYKKVKWATANKPN---S-KNGEVYL 355 (365)
Q Consensus 297 --~d~~~le~aL~Ei~RVLRPGG-------------~--~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~y~ 355 (365)
.++ ....++.++.|+++--- . ..+.-+.+...++++||. +.|.+-.-.| + .+..+|+
T Consensus 82 ~~~~d-~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~-~~~~~l~a~~~GvPQ~R~R~~~ 159 (275)
T cd00315 82 KGFED-TRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYN-VYWKLLNASDYGVPQNRERVFI 159 (275)
T ss_pred CCCCC-chHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcE-EEEEEEEHHHcCCCCCCcEEEE
Confidence 111 12235556666655433 1 011123366778999997 5666555433 2 4777888
Q ss_pred EEee
Q 017839 356 TALL 359 (365)
Q Consensus 356 sall 359 (365)
-|..
T Consensus 160 ia~~ 163 (275)
T cd00315 160 IGIR 163 (275)
T ss_pred EEEe
Confidence 7775
No 218
>PRK00536 speE spermidine synthase; Provisional
Probab=93.56 E-value=0.42 Score=46.58 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=59.7
Q ss_pred cchHHHHhhhcccc-CCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----------cCCCcEEecc
Q 017839 205 DLPVTQFLDLAKAA-NSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----------RGLVPLHVPL 273 (365)
Q Consensus 205 ~f~I~~vL~~~p~~-~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----------Rg~v~~~~g~ 273 (365)
+|.-.++|...+.. -+.-+.||=||.|-|..++.+.++.-.|+-+++| +...+.+.+ ..++.++...
T Consensus 55 EfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID--~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~ 132 (262)
T PRK00536 55 LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD--EKILDSFISFFPHFHEVKNNKNFTHAKQL 132 (262)
T ss_pred hhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECC--HHHHHHHHHHCHHHHHhhcCCCEEEeehh
Confidence 45456666543321 1233567999999999999999875455444454 555554433 1122333210
Q ss_pred CCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 274 QQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 274 ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ -..++||+|++-.. .+ +.....++|.|+|||
T Consensus 133 -~~--~~~~~fDVIIvDs~----~~----~~fy~~~~~~L~~~G 165 (262)
T PRK00536 133 -LD--LDIKKYDLIICLQE----PD----IHKIDGLKRMLKEDG 165 (262)
T ss_pred -hh--ccCCcCCEEEEcCC----CC----hHHHHHHHHhcCCCc
Confidence 00 02478999997542 11 146789999999999
No 219
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.39 E-value=0.33 Score=48.60 Aligned_cols=91 Identities=4% Similarity=0.000 Sum_probs=54.8
Q ss_pred eEEEEcCcccHHHHHHhh----cC--CeEEEeccCCChhHHHHHHHc----CCCcE----EeccC----CCCC--CCCCc
Q 017839 224 LGIDVGGATGSFAARMKL----YN--ITILTTTMNLGAPYSEAAALR----GLVPL----HVPLQ----QRLP--LFDGV 283 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae----~g--v~Vv~~~ldl~~~~~e~a~~R----g~v~~----~~g~a----e~LP--F~D~S 283 (365)
.++|+|||.|.=+..|.+ .+ ++.+ .+|++..+.+.+.++ ....+ +.|+- +.|| -..+.
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~--plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYY--ALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEE--EEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 359999999986554433 22 4444 466667776655432 21112 33321 2232 12234
Q ss_pred cceeE-EcchhhcccChhhHHHHHHHHHh-hhCCCC
Q 017839 284 LDVVR-CGHAVNRWIPVIMMEFLFYDVDR-VLRGGG 317 (365)
Q Consensus 284 FDlV~-s~~~L~~w~d~~~le~aL~Ei~R-VLRPGG 317 (365)
..+|. -+.++-|+.+.+. ..+|+++.+ +|+|||
T Consensus 157 ~r~~~flGSsiGNf~~~ea-~~fL~~~~~~~l~~~d 191 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEA-AAFLAGFLATALSPSD 191 (319)
T ss_pred ccEEEEeCccccCCCHHHH-HHHHHHHHHhhCCCCC
Confidence 56666 4457878776654 468999999 999999
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.09 E-value=0.17 Score=47.48 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=42.4
Q ss_pred ceEEEEcCcccHHHHHHhh-cCCe-EEEeccCCChhHHHHH-----------HHcCC----CcEEeccCCCCCCCC---C
Q 017839 223 RLGIDVGGATGSFAARMKL-YNIT-ILTTTMNLGAPYSEAA-----------ALRGL----VPLHVPLQQRLPLFD---G 282 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae-~gv~-Vv~~~ldl~~~~~e~a-----------~~Rg~----v~~~~g~ae~LPF~D---~ 282 (365)
.+.+|||||.|......+- .++. ++|+.+. +...+.+ ...|. +.+..++.-.-++.+ .
T Consensus 44 dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~--~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 44 DVFYDLGSGVGNVVFQAALQTGCKKSVGIEIL--PELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--SEEEEEE-S--HHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCcEEEEEEec--hHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 4679999999987555443 3554 7776554 2221111 11122 233444322212111 2
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.-|+|+++... + ++ .+...|.++.+-||||-
T Consensus 122 ~AdvVf~Nn~~--F-~~-~l~~~L~~~~~~lk~G~ 152 (205)
T PF08123_consen 122 DADVVFVNNTC--F-DP-DLNLALAELLLELKPGA 152 (205)
T ss_dssp C-SEEEE--TT--T--H-HHHHHHHHHHTTS-TT-
T ss_pred CCCEEEEeccc--c-CH-HHHHHHHHHHhcCCCCC
Confidence 35899988753 2 22 34567899999999998
No 221
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.01 E-value=0.53 Score=46.62 Aligned_cols=116 Identities=14% Similarity=0.187 Sum_probs=72.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHH----HcCC---CcEEeccCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAA----LRGL---VPLHVPLQQR 276 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~----~Rg~---v~~~~g~ae~ 276 (365)
+|-.+|++.| |. +||+-|.|+|+++-.+++. + ..+.+ +|+++...+.+. +.|+ +.+..-|...
T Consensus 96 ~I~~~L~i~P---Gs--vV~EsGTGSGSlShaiaraV~ptGhl~t--fefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 96 MILSMLEIRP---GS--VVLESGTGSGSLSHAIARAVAPTGHLYT--FEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHhcCCC---CC--EEEecCCCcchHHHHHHHhhCcCcceEE--EEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 5666777777 65 4699999999999888764 2 24554 344444333333 3343 4555556555
Q ss_pred CCC--CCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC--------CcchhhhhHHHHHHhhCCcee
Q 017839 277 LPL--FDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG--------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 277 LPF--~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~~~l~~~~~~~l~~~gfk~i 338 (365)
.-| .+..+|.|+--. ...|. ++--.+.+||-+| -.+++.+ -.+.++.+||..+
T Consensus 169 ~GF~~ks~~aDaVFLDl-PaPw~-------AiPha~~~lk~~g~r~csFSPCIEQvqr-tce~l~~~gf~~i 231 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLDL-PAPWE-------AIPHAAKILKDEGGRLCSFSPCIEQVQR-TCEALRSLGFIEI 231 (314)
T ss_pred CCccccccccceEEEcC-CChhh-------hhhhhHHHhhhcCceEEeccHHHHHHHH-HHHHHHhCCCceE
Confidence 544 468899998632 22443 4555667999999 2355544 4567778888654
No 222
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=92.70 E-value=1.8 Score=41.08 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=59.1
Q ss_pred eEEEEcCcccHHHHHHh--hcCCeEEEeccC-CChhHHHHH-HHcCC--CcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMK--LYNITILTTTMN-LGAPYSEAA-ALRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~La--e~gv~Vv~~~ld-l~~~~~e~a-~~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.++|||.|.|.-+.-|+ .....++=.+-. --..+.+.+ .+-|+ +.++.+-+|.+.-...-||+|+|+-+- .
T Consensus 70 ~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-~-- 146 (215)
T COG0357 70 RVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-S-- 146 (215)
T ss_pred EEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-c--
Confidence 35999999998777765 223332211111 112333333 33354 556777777775222229999997653 2
Q ss_pred ChhhHHHHHHHHHhhhCCCC-----Ccchhhh---hHHHHHHhhCCceeeEEe
Q 017839 298 PVIMMEFLFYDVDRVLRGGG-----KASDLEN---VYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG-----~~~~l~~---~~~~~l~~~gfk~i~w~v 342 (365)
+...+.=....||+|| ......+ .........|+...+...
T Consensus 147 ----L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 147 ----LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred ----hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEE
Confidence 2223333567888878 1122111 134456666666555443
No 223
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=92.69 E-value=1 Score=43.27 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=71.7
Q ss_pred EEEEcCcccHHHHHHhhc-C--CeEEEeccCC--ChhHHHHHHHcC-CCcEEeccCCC---CCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLY-N--ITILTTTMNL--GAPYSEAAALRG-LVPLHVPLQQR---LPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl--~~~~~e~a~~Rg-~v~~~~g~ae~---LPF~D~SFDlV~s~~~L~~ 295 (365)
||-+|..+|+...++++- | ..|.++..+. .....+.+..|. ++|++. |+.. -...=+.+|+|++--+
T Consensus 77 VLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~-DAr~P~~Y~~lv~~VDvI~~DVa--- 152 (229)
T PF01269_consen 77 VLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE-DARHPEKYRMLVEMVDVIFQDVA--- 152 (229)
T ss_dssp EEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES--TTSGGGGTTTS--EEEEEEE-S---
T ss_pred EEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec-cCCChHHhhcccccccEEEecCC---
Confidence 499999999998888764 2 3455544431 112234455664 455544 4321 1112338999988543
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------------CcchhhhhHHHH---HHhhCCceeeEEeecCCCC-CCCceEEEEee
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------------KASDLENVYGPL---IGKLGYKKVKWATANKPNS-KNGEVYLTALL 359 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------------~~~~l~~~~~~~---l~~~gfk~i~w~v~~K~d~-~~~~~y~sall 359 (365)
.++..+.++.....-||+|| .-.+-++++.+- ++..||+.+.-.. +++ ++|..-+-+.+
T Consensus 153 --Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~---LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 153 --QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQIT---LEPYERDHAMVVGRY 227 (229)
T ss_dssp --STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE----TTTSTTEEEEEEEE
T ss_pred --ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEec---cCCCCCCcEEEEEEe
Confidence 22346789999999999999 112223455544 4455777665432 233 56776666666
Q ss_pred ec
Q 017839 360 QK 361 (365)
Q Consensus 360 ~K 361 (365)
.|
T Consensus 228 ~~ 229 (229)
T PF01269_consen 228 RK 229 (229)
T ss_dssp --
T ss_pred cC
Confidence 54
No 224
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=92.66 E-value=0.16 Score=51.11 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=35.0
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR 276 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~ 276 (365)
+||+|||+|.|+..|++....|++++. +..+.+.+.+ .|+ +.++.+++.+
T Consensus 201 vlDl~~G~G~~sl~la~~~~~v~~vE~--~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 201 LLELYCGNGNFSLALAQNFRRVLATEI--AKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred EEEEeccccHHHHHHHHhCCEEEEEEC--CHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 599999999999999887667776544 4566555443 333 5677777654
No 225
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=92.65 E-value=0.32 Score=42.25 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=24.2
Q ss_pred ceEEEEcCcccHHHHHHhh-----c-CCeEEEeccC
Q 017839 223 RLGIDVGGATGSFAARMKL-----Y-NITILTTTMN 252 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae-----~-gv~Vv~~~ld 252 (365)
..++|+|||-|.++..|+. . +..|++++.+
T Consensus 27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~ 62 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCN 62 (141)
T ss_pred CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 4569999999999999988 3 6788876555
No 226
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.52 E-value=0.2 Score=50.30 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=38.6
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRL 277 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~L 277 (365)
+++.+++..+.. +. + +||+-||+|+|+..|++....|+|++.+ +.+.+.|. ..++ +.|+.++++++
T Consensus 185 l~~~~~~~l~~~-~~-~-vlDlycG~G~fsl~la~~~~~V~gvE~~--~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 185 LYEQALEWLDLS-KG-D-VLDLYCGVGTFSLPLAKKAKKVIGVEIV--EEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHCTT--TT-E-EEEES-TTTCCHHHHHCCSSEEEEEES---HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHhhcC-CC-c-EEEEeecCCHHHHHHHhhCCeEEEeeCC--HHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 455555544321 22 3 5999999999999999988888876543 45544433 3343 45666655443
No 227
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=92.09 E-value=1.4 Score=42.19 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=54.9
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH------c----CCCcEEeccCCC-CCCCCC-ccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL------R----GLVPLHVPLQQR-LPLFDG-VLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~------R----g~v~~~~g~ae~-LPF~D~-SFDlV~ 288 (365)
+.||=||.|.|..+..+.+.. ..|..+++| +...+.+.+ . ..+.++.+|+.. |--.++ .||+|+
T Consensus 78 ~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD--~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 78 KRVLIIGGGDGGTARELLKHPPVESITVVEID--PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp -EEEEEESTTSHHHHHHTTSTT-SEEEEEES---HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CceEEEcCCChhhhhhhhhcCCcceEEEEecC--hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 456999999999999998864 344444454 455554432 1 245677777532 222233 999999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
.-..- ...+... -...+..+.|.|+|||
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~G 185 (246)
T PF01564_consen 156 VDLTD-PDGPAPNLFTREFYQLCKRRLKPDG 185 (246)
T ss_dssp EESSS-TTSCGGGGSSHHHHHHHHHHEEEEE
T ss_pred EeCCC-CCCCcccccCHHHHHHHHhhcCCCc
Confidence 73321 1111111 1357899999999999
No 228
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.99 E-value=0.2 Score=45.58 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=45.3
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.++|+|||+|-+....+-. +-.|+|+++| ....+..... . .+.+.+.+...+-+.-+.||.++.+--+
T Consensus 51 kl~DLgcgcGmLs~a~sm~~~e~vlGfDId--peALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 51 KLKDLGCGCGMLSIAFSMPKNESVLGFDID--PEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred chhhhcCchhhhHHHhhcCCCceEEeeecC--HHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3599999999877444433 3567776665 4444432211 1 1467888877887788999999987654
No 229
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=91.96 E-value=0.2 Score=42.53 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=22.1
Q ss_pred EEEEcCcccHHHHHHhhcCC--eEEEeccC
Q 017839 225 GIDVGGATGSFAARMKLYNI--TILTTTMN 252 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv--~Vv~~~ld 252 (365)
+||||||+|.++..+++.+. ++++.+.+
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~ 31 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPL 31 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecC
Confidence 69999999999999988753 57765443
No 230
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=91.30 E-value=0.18 Score=53.32 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=36.7
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHH----HHHcCC--CcEEeccCCCC
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEA----AALRGL--VPLHVPLQQRL 277 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~----a~~Rg~--v~~~~g~ae~L 277 (365)
.++||+.||||.++..++++-..|+|+.++. ...+. |+..|+ ..|+.|-+|++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~--~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISP--DAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecCh--hhcchhhhcchhcCccceeeeecchhhc
Confidence 5679999999999999998767788876653 23333 333444 46788855553
No 231
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.01 E-value=0.58 Score=45.08 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=55.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhH--HHHHHHcC---CCcEEeccC-CCCC-----CCCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPY--SEAAALRG---LVPLHVPLQ-QRLP-----LFDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~--~e~a~~Rg---~v~~~~g~a-e~LP-----F~D~SFDlV~s 289 (365)
+.||||.=||.-+..+|.. +..|++.++|..... .++....| ++.+.+|.+ +.|+ ...++||+|+.
T Consensus 76 ~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv 155 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV 155 (237)
T ss_pred eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE
Confidence 4599999888765555543 557777666632111 23333334 477888754 2221 36899999986
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+|-+.- -..+.+.-|.||+||
T Consensus 156 ----DadK~nY--~~y~e~~l~Llr~GG 177 (237)
T KOG1663|consen 156 ----DADKDNY--SNYYERLLRLLRVGG 177 (237)
T ss_pred ----ccchHHH--HHHHHHHHhhccccc
Confidence 3555432 257789999999999
No 232
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.38 E-value=1.1 Score=42.55 Aligned_cols=120 Identities=18% Similarity=0.082 Sum_probs=60.8
Q ss_pred eEEEEcCcccHHHHHHhhc-CC--eEEEecc-CC-------ChhHHHHHHHcCC--CcEEeccCCCCC-------CCCCc
Q 017839 224 LGIDVGGATGSFAARMKLY-NI--TILTTTM-NL-------GAPYSEAAALRGL--VPLHVPLQQRLP-------LFDGV 283 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv--~Vv~~~l-dl-------~~~~~e~a~~Rg~--v~~~~g~ae~LP-------F~D~S 283 (365)
+|+|+=-|.|.|++.++.. |. .|.+..- +. .+.+...+.+.+. +..+....-.|+ .++++
T Consensus 51 tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~~~~ 130 (238)
T COG4798 51 TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVPTAQ 130 (238)
T ss_pred EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccccch
Confidence 5799999999999988764 22 3332211 11 1111111111111 112222222233 23444
Q ss_pred cceeEEcchhhcccChhhHHHHHHHHHhhhCCCC------C----c---chh-------hhhHHHHHHhhCCceeeEE--
Q 017839 284 LDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG------K----A---SDL-------ENVYGPLIGKLGYKKVKWA-- 341 (365)
Q Consensus 284 FDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG------~----~---~~l-------~~~~~~~l~~~gfk~i~w~-- 341 (365)
+|.+....-++ + ...+.+..+++++||||| + + .+. ........+..||+...-.
T Consensus 131 ~yhdmh~k~i~---~-~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 131 NYHDMHNKNIH---P-ATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred hhhhhhccccC---c-chHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeehh
Confidence 44444433332 2 345679999999999999 0 0 010 1234567788999764322
Q ss_pred eecCCC
Q 017839 342 TANKPN 347 (365)
Q Consensus 342 v~~K~d 347 (365)
.+++.|
T Consensus 207 laNp~D 212 (238)
T COG4798 207 LANPDD 212 (238)
T ss_pred hcCCCC
Confidence 445544
No 233
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=90.38 E-value=1.3 Score=44.83 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHH----HHHc---CCCcEEeccCCCCCCCCCccceeEEcc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEA----AALR---GLVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~----a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
|. +|||+=+|.|-|+..++..|.. |++.++|. ...+. +... +.+..+.||+..+++.-+.||-|++..
T Consensus 189 GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP--~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 189 GE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINP--DAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred CC--EEEEccCCcccchhhhhhcCCceEEEEecCH--HHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 64 4699999999999999998854 77767663 33333 2222 235578889888887779999999987
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC--------Ccchh----hhhHHHHHHhhCC--ceeeEEeecCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG--------KASDL----ENVYGPLIGKLGY--KKVKWATANKP 346 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~~~l----~~~~~~~l~~~gf--k~i~w~v~~K~ 346 (365)
.-. ...++-...+.+|+|| ..++. .+.......+.|| ....|+..++-
T Consensus 265 p~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vksy 326 (341)
T COG2520 265 PKS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSY 326 (341)
T ss_pred CCc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEeccc
Confidence 431 1246667788899999 12221 1223445556665 34566655554
No 234
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.15 E-value=0.45 Score=49.53 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=45.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH----HHcCC--CcEEeccCCCCCCC---CCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA----ALRGL--VPLHVPLQQRLPLF---DGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a----~~Rg~--v~~~~g~ae~LPF~---D~SFDlV~s 289 (365)
.+||+=||.|+|+..|+++...|+|+.++ +++.+.+ +..|+ +.|..++++++.-. ...||.|+.
T Consensus 296 ~vlDlYCGvG~f~l~lA~~~~~V~gvEi~--~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 296 RVLDLYCGVGTFGLPLAKRVKKVHGVEIS--PEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred EEEEeccCCChhhhhhcccCCEEEEEecC--HHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 45999999999999999888888876654 4444433 23343 56777888776533 358899875
No 235
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=89.52 E-value=0.9 Score=44.05 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=49.6
Q ss_pred eEEEEcCcccHHHHHHhh---------cCCeEEEeccCCChhHHHHHH----HcCC----CcEEeccCCCCC-CC-CCcc
Q 017839 224 LGIDVGGATGSFAARMKL---------YNITILTTTMNLGAPYSEAAA----LRGL----VPLHVPLQQRLP-LF-DGVL 284 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae---------~gv~Vv~~~ldl~~~~~e~a~----~Rg~----v~~~~g~ae~LP-F~-D~SF 284 (365)
.|||-+||+|.|...+.+ ....+.|.++| ......+. -+|. ..+..++.-.-+ +. ...|
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 126 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF 126 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred eeechhhhHHHHHHHHHHhhcccccccccceeEeecCc--HHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 459999999999877765 24667776665 33332221 2332 235555543323 33 5899
Q ss_pred ceeEEcchhhc--ccCh----------------hhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNR--WIPV----------------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~--w~d~----------------~~le~aL~Ei~RVLRPGG 317 (365)
|+|+++--+.. |... ..--.++.-+.+.|++||
T Consensus 127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G 177 (311)
T PF02384_consen 127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGG 177 (311)
T ss_dssp EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEE
T ss_pred ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccc
Confidence 99998763321 2110 011136677999999999
No 236
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=89.18 E-value=0.6 Score=49.11 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=15.9
Q ss_pred eEEEEcCcccHHHHHHhhc
Q 017839 224 LGIDVGGATGSFAARMKLY 242 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~ 242 (365)
.+||.|||+|.|...++++
T Consensus 34 ~ilDP~cGsG~fl~~~~~~ 52 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKK 52 (524)
T ss_pred EEEeCCCCccHHHHHHHHH
Confidence 3599999999998888754
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.87 E-value=2.5 Score=43.46 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=57.7
Q ss_pred cCceecccCCccc---hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCC--------------------------
Q 017839 194 SSSFLAFKSELDL---PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNI-------------------------- 244 (365)
Q Consensus 194 ~~~W~~~~g~~~f---~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv-------------------------- 244 (365)
+..|+...|...+ +...|+.+....++ +..+|==||+|+++...+-.+.
T Consensus 163 kRGyR~~~g~ApLketLAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~ 240 (381)
T COG0116 163 KRGYRVYDGPAPLKETLAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKL 240 (381)
T ss_pred hccccccCCCCCchHHHHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHH
Confidence 4456666664443 23334433322223 3459999999999876665442
Q ss_pred ---------------eEEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccceeEEcc
Q 017839 245 ---------------TILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 245 ---------------~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.++++++| ..+.+.|. +.| .|.|.++++++|+=+-+.+|+|+|+-
T Consensus 241 ~~ea~~~a~~~~~~~~~~G~Did--~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 241 REEAEERARRGKELPIIYGSDID--PRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred HHHHHHHHhhcCccceEEEecCC--HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 14465544 55665543 234 37899999998863338999999985
No 238
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=88.40 E-value=7.2 Score=36.58 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=60.3
Q ss_pred EEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHH----HHHcC---CCcEEeccC-CCCCCCCCccceeEEcchhh
Q 017839 225 GIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEA----AALRG---LVPLHVPLQ-QRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~----a~~Rg---~v~~~~g~a-e~LPF~D~SFDlV~s~~~L~ 294 (365)
+.||||-.|.+..+|.++|. .++.++++ +...+. +...| .+.+..|++ +.|+ +.+..|.|+...+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~--~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDIN--PGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESS--HHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence 48999999999999999985 45554444 333333 23344 366777875 4444 222368888655421
Q ss_pred cccChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCceeeEEeec
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
. .+...|.+...+++..- .... ......++...||..+.-.+..
T Consensus 78 ~-----lI~~ILe~~~~~~~~~~~lILqP~~~-~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 78 E-----LIIEILEAGPEKLSSAKRLILQPNTH-AYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp H-----HHHHHHHHTGGGGTT--EEEEEESS--HHHHHHHHHHTTEEEEEEEEEE
T ss_pred H-----HHHHHHHhhHHHhccCCeEEEeCCCC-hHHHHHHHHHCCCEEEEeEEEe
Confidence 1 12235555555555443 1111 1236679999999887665544
No 239
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=88.37 E-value=2.2 Score=43.20 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=29.1
Q ss_pred hHHHHhhhcccc---CCCCceEEEEcCcccHHHHHHhhcCCeEEE
Q 017839 207 PVTQFLDLAKAA---NSVIRLGIDVGGATGSFAARMKLYNITILT 248 (365)
Q Consensus 207 ~I~~vL~~~p~~---~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~ 248 (365)
.|+++-.+-|.. ...++| |==|||+|.++..|+..|..+-|
T Consensus 134 ii~~l~~lfp~~~~~r~ki~i-LvPGaGlGRLa~dla~~G~~~qG 177 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRI-LVPGAGLGRLAYDLACLGFKCQG 177 (369)
T ss_pred HHHHHHhhCCCccccccCceE-EecCCCchhHHHHHHHhcccccc
Confidence 677766665531 134665 99999999999999988755433
No 240
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=88.13 E-value=3.2 Score=39.38 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=63.4
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHcCCCcEEecc----------CCCCCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALRGLVPLHVPL----------QQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~----------ae~LPF~D~SFDlV~s~ 290 (365)
+|||+||..|+++.-..++ + ..|+|+++- + ...-+|...+...+ -|.| ++...|+|.+-
T Consensus 72 ~VlD~G~APGsWsQVavqr~~p~g~v~gVDll-h-----~~p~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~VdvVlSD 143 (232)
T KOG4589|consen 72 TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL-H-----IEPPEGATIIQGNDVTDPETYRKIFEAL--PNRPVDVVLSD 143 (232)
T ss_pred EEEEccCCCChHHHHHHHhhCCCceEEEEeee-e-----ccCCCCcccccccccCCHHHHHHHHHhC--CCCcccEEEec
Confidence 4599999999999888776 2 345554321 0 01112221111111 1334 46788888874
Q ss_pred chhhccc-----ChhhH----HHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceE
Q 017839 291 HAVNRWI-----PVIMM----EFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVY 354 (365)
Q Consensus 291 ~~L~~w~-----d~~~l----e~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y 354 (365)
.. .+-. |.... ..++.=.--.++|+| .+++-.+.-..|.+. |..++-.--+..-.+..|.|
T Consensus 144 Ma-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~--f~~Vk~vKP~Asr~eS~E~y 220 (232)
T KOG4589|consen 144 MA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAV--FTNVKKVKPDASRDESAETY 220 (232)
T ss_pred cC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHH--hhhcEeeCCcccccccccee
Confidence 42 1111 11100 112222334578999 444433322234444 44443221111112678999
Q ss_pred EEEeeecCC
Q 017839 355 LTALLQKPV 363 (365)
Q Consensus 355 ~sall~KP~ 363 (365)
+-++=-|+-
T Consensus 221 ~v~~~~k~~ 229 (232)
T KOG4589|consen 221 LVCLNFKGN 229 (232)
T ss_pred eeeeeccCc
Confidence 988877764
No 241
>PRK11524 putative methyltransferase; Provisional
Probab=87.56 E-value=0.95 Score=43.95 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=38.4
Q ss_pred EEeccCCCC--CCCCCccceeEEcc--hh--------hcccCh---hhHHHHHHHHHhhhCCCC------CcchhhhhHH
Q 017839 269 LHVPLQQRL--PLFDGVLDVVRCGH--AV--------NRWIPV---IMMEFLFYDVDRVLRGGG------KASDLENVYG 327 (365)
Q Consensus 269 ~~~g~ae~L--PF~D~SFDlV~s~~--~L--------~~w~d~---~~le~aL~Ei~RVLRPGG------~~~~l~~~~~ 327 (365)
++.+|+..+ .+++++||+|++.= .+ ..|... +-++..+.|+.||||||| ....+. +.
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~--~~ 88 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP--FI 88 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh--HH
Confidence 445554332 35688888888831 11 111100 113468899999999999 222221 34
Q ss_pred HHHHhhCCceeeE
Q 017839 328 PLIGKLGYKKVKW 340 (365)
Q Consensus 328 ~~l~~~gfk~i~w 340 (365)
.++.+.||....+
T Consensus 89 ~~~~~~~f~~~~~ 101 (284)
T PRK11524 89 DLYCRKLFTIKSR 101 (284)
T ss_pred HHHHhcCcceEEE
Confidence 4555667754433
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=87.05 E-value=0.58 Score=44.35 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=51.0
Q ss_pred ceEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHH-----HHcCC-CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAA-----ALRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a-----~~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
+.|||+|.|+|-.+..-+..| ..|+..+++ +....+ ++.|. +.+.. .++=+.+..||+|..+.++.+
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~---P~~~~ai~lNa~angv~i~~~~---~d~~g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADID---PWLEQAIRLNAAANGVSILFTH---ADLIGSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCC---hHHHHHhhcchhhccceeEEee---ccccCCCcceeEEEeeceecC
Confidence 346999999998877776666 344544554 333222 22332 22222 223348889999999998754
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-. .....+. +.+-|+-.|
T Consensus 155 ~~---~a~~l~~-~~~~l~~~g 172 (218)
T COG3897 155 HT---EADRLIP-WKDRLAEAG 172 (218)
T ss_pred ch---HHHHHHH-HHHHHHhCC
Confidence 32 1223444 777777777
No 243
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=86.66 E-value=1.2 Score=45.53 Aligned_cols=86 Identities=12% Similarity=0.046 Sum_probs=55.0
Q ss_pred CceEEEEcCcccHHHHHHhhc--CC-eEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC-CCCCCccceeEEcc
Q 017839 222 IRLGIDVGGATGSFAARMKLY--NI-TILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL-PLFDGVLDVVRCGH 291 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--gv-~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L-PF~D~SFDlV~s~~ 291 (365)
++ +||+-||+|.++.+++.+ |+ .|+..++| ....+.+.+ .+. +.++.+++..+ .-..+.||+|..-=
T Consensus 46 ~~-vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n--~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 IN-IADALSASGIRAIRYAHEIEGVREVFANDIN--PKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CE-EEECCCchhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 44 599999999999999987 53 45654544 444444322 232 34666665543 22246799998732
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ .. ....+..+.+.+++||
T Consensus 123 -f---Gs---~~~fld~al~~~~~~g 141 (374)
T TIGR00308 123 -F---GT---PAPFVDSAIQASAERG 141 (374)
T ss_pred -C---CC---cHHHHHHHHHhcccCC
Confidence 2 11 1247888999999999
No 244
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=86.49 E-value=1 Score=43.40 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=51.8
Q ss_pred EEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHcC-----CCcEEeccCC-CCC-CCCCccceeEEcchhh
Q 017839 225 GIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQ-RLP-LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae-~LP-F~D~SFDlV~s~~~L~ 294 (365)
||.||-|-|.....+.++. ..++. .+....+....-| .|-.+.|.=| -+| .+|+.||.|.--..-.
T Consensus 105 vLnVGFGMgIidT~iQe~~p~~H~IiE----~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e 180 (271)
T KOG1709|consen 105 VLNVGFGMGIIDTFIQEAPPDEHWIIE----AHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSE 180 (271)
T ss_pred EEEeccchHHHHHHHhhcCCcceEEEe----cCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhh
Confidence 4999999999888887764 33442 2233333333322 2333444211 122 4699999998533223
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. +++......+.|.|||||
T Consensus 181 ~y---Edl~~~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 181 LY---EDLRHFHQHVVRLLKPEG 200 (271)
T ss_pred HH---HHHHHHHHHHhhhcCCCc
Confidence 32 234567788999999999
No 245
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.94 E-value=0.41 Score=44.05 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.6
Q ss_pred CCCccceeEEcchhhccc--------ChhhHHHHHHHHHhhhCCCC
Q 017839 280 FDGVLDVVRCGHAVNRWI--------PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 280 ~D~SFDlV~s~~~L~~w~--------d~~~le~aL~Ei~RVLRPGG 317 (365)
..++||.+.|..+++|.. ++..-..++.++.|||||||
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG 105 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGG 105 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCC
Confidence 467899999999997754 12222468999999999999
No 246
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.45 E-value=1.3 Score=41.15 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=62.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCe---EEEeccCC-ChhHHHHHHHcCC------C---cEEeccCCCCCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNIT---ILTTTMNL-GAPYSEAAALRGL------V---PLHVPLQQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~---Vv~~~ldl-~~~~~e~a~~Rg~------v---~~~~g~ae~LPF~D~SFDlV~s~ 290 (365)
.||++|.|--.++..|....+. |.-++=|. +....+.+..++. + .+.. ...+.--..++||+|.|+
T Consensus 32 ~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~-~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 32 RILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLI-WGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHH-hhhHHHHhhCcccEEEec
Confidence 3499999987777777654322 22112111 1111233333321 0 1111 122333456799999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC--------CcchhhhhHHHHHHhhCCce
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG--------KASDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~~~l~~~~~~~l~~~gfk~ 337 (365)
.|+- +. +.-+..+.-|.+.|||.| .+..+.+ +.+..+..||..
T Consensus 111 DClF-fd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~k-F~de~~~~gf~v 161 (201)
T KOG3201|consen 111 DCLF-FD--EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQK-FLDEVGTVGFTV 161 (201)
T ss_pred cchh-HH--HHHHHHHHHHHHHhCcccceeEecCcccchHHH-HHHHHHhceeEE
Confidence 9983 32 234578889999999999 2333443 777778888643
No 247
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=84.59 E-value=0.66 Score=39.91 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=20.9
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEE
Q 017839 225 GIDVGGATGSFAARMKLYNITILT 248 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~ 248 (365)
-.|||||.|-+.-.|.+.|....|
T Consensus 62 FVDlGCGNGLLV~IL~~EGy~G~G 85 (112)
T PF07757_consen 62 FVDLGCGNGLLVYILNSEGYPGWG 85 (112)
T ss_pred eEEccCCchHHHHHHHhCCCCccc
Confidence 399999999999999988887665
No 248
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.32 E-value=9.9 Score=37.60 Aligned_cols=132 Identities=13% Similarity=0.141 Sum_probs=72.6
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCC-cEEeccCCCCCCC-CCccceeEEcchhhccc-----
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLV-PLHVPLQQRLPLF-DGVLDVVRCGHAVNRWI----- 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v-~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w~----- 297 (365)
++|+=||.|.+..-+.+.|..++. +.|.+....+.... ... .++.+|...+... -..+|+++.+.-=..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~-a~e~~~~a~~ty~~-N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~ 78 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVF-ASEIDKYAQKTYEA-NFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKR 78 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEE-EEeCCHHHHHHHHH-hCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhccc
Confidence 489999999999999888877654 23443444333222 111 2344565554321 12489998653111111
Q ss_pred -C-hhhHHHHHHHHHhhh---CCCC----C--------cchhhhhHHHHHHhhCCceeeEEeecCCC---C-CCCceEEE
Q 017839 298 -P-VIMMEFLFYDVDRVL---RGGG----K--------ASDLENVYGPLIGKLGYKKVKWATANKPN---S-KNGEVYLT 356 (365)
Q Consensus 298 -d-~~~le~aL~Ei~RVL---RPGG----~--------~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~y~s 356 (365)
. .+....++.++.|++ ||.= . ....-+.+...++.+||. +.|.+..-.| + .+..+|+-
T Consensus 79 ~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~-v~~~~l~a~dyGvPQ~R~R~f~i 157 (315)
T TIGR00675 79 KGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYK-VYYKVLNAKDFGVPQNRERIYIV 157 (315)
T ss_pred CCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCE-EEEEEEcHHHCCCCCCccEEEEE
Confidence 0 011224566776766 5544 1 111123356778899996 5666555444 2 57778887
Q ss_pred Eee
Q 017839 357 ALL 359 (365)
Q Consensus 357 all 359 (365)
|..
T Consensus 158 a~r 160 (315)
T TIGR00675 158 GFR 160 (315)
T ss_pred EEe
Confidence 765
No 249
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.02 E-value=0.37 Score=41.40 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=26.3
Q ss_pred ccceeEEcchhh----cccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVN----RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~----~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.||+|.|..+-- ||.| +.+..++.-+++.|||||
T Consensus 1 ~yDvilclSVtkWIHLn~GD-~Gl~~~f~~~~~~L~pGG 38 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGD-EGLKRFFRRIYSLLRPGG 38 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHH-HHHHHHHHHHHHHEEEEE
T ss_pred CccEEEEEEeeEEEEecCcC-HHHHHHHHHHHHhhCCCC
Confidence 489999988651 3434 568889999999999999
No 250
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=83.08 E-value=4 Score=38.08 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=52.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHHH-------cCCCcEEeccCCC-CCCCCC--ccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAAL-------RGLVPLHVPLQQR-LPLFDG--VLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~~-------Rg~v~~~~g~ae~-LPF~D~--SFDlV~s~~~ 292 (365)
++||+=+|+|.++.....||+. ++-++.| ....+.+.+ .+...++..++.+ |+-... .||+|+.-=-
T Consensus 46 ~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~--~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 46 RVLDLFAGSGALGLEALSRGAARVVFVEKD--RKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred EEEEecCCccHhHHHHHhCCCceEEEEecC--HHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence 4599999999999999999854 3433444 333322221 1335566666553 232333 4999997543
Q ss_pred hhcccCh-hhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPV-IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~-~~le~aL~Ei~RVLRPGG 317 (365)
+. +.-. ......+.+-...|+|||
T Consensus 124 y~-~~l~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 124 YA-KGLLDKELALLLLEENGWLKPGA 148 (187)
T ss_pred Cc-cchhhHHHHHHHHHhcCCcCCCc
Confidence 32 1110 112223334678899999
No 251
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=82.85 E-value=2.1 Score=44.03 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=18.0
Q ss_pred CCCCCccceeEEcchhhcccC
Q 017839 278 PLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 278 PF~D~SFDlV~s~~~L~~w~d 298 (365)
=||++|.+++||++++ ||..
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred ccCCCceEEEEeeccc-eecc
Confidence 4899999999999999 7874
No 252
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=82.66 E-value=3.4 Score=41.48 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=14.8
Q ss_pred cCCCCCCCCCccceeEEcchhhcccC
Q 017839 273 LQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 273 ~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.-..==||++|.|++||++++ ||..
T Consensus 97 SFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred hhhhccCCCCceEEEEEechh-hhcc
Confidence 333334899999999999999 7873
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.49 E-value=20 Score=34.42 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=54.6
Q ss_pred EEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHH---HHHHc-CCCcEEeccC---CCCCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSE---AAALR-GLVPLHVPLQ---QRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e---~a~~R-g~v~~~~g~a---e~LPF~D~SFDlV~s~~~L~~ 295 (365)
||=+|.-+|+...+++.- | ..+.++.++. .++.+ .+.+| +++|+. +|| ++--+.=+..|+|+.--+
T Consensus 80 VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~-R~~reLl~~a~~R~Ni~PIL-~DA~~P~~Y~~~Ve~VDviy~DVA--- 154 (231)
T COG1889 80 VLYLGAASGTTVSHVSDIVGEGRIYAVEFSP-RPMRELLDVAEKRPNIIPIL-EDARKPEKYRHLVEKVDVIYQDVA--- 154 (231)
T ss_pred EEEeeccCCCcHhHHHhccCCCcEEEEEecc-hhHHHHHHHHHhCCCceeee-cccCCcHHhhhhcccccEEEEecC---
Confidence 499999999999888874 2 2344444432 34544 34455 356654 343 222233456888887432
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+++.+.+...+..-||+||
T Consensus 155 --Qp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 155 --QPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred --CchHHHHHHHHHHHhcccCC
Confidence 23456788999999999999
No 254
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.37 E-value=4 Score=41.38 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=51.4
Q ss_pred EEEcC-cccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEecc-CCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 226 IDVGG-ATGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPL-QQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 226 LDIGC-GtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~-ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
+=+|+ |.|..|..+++ .|.+|+..+ .+....+++.+-|--.++.+. ...+.--.+.||+|+..-. .
T Consensus 171 ~I~G~GGlGh~avQ~Aka~ga~Via~~--~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-------- 239 (339)
T COG1064 171 AVVGAGGLGHMAVQYAKAMGAEVIAIT--RSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-------- 239 (339)
T ss_pred EEECCcHHHHHHHHHHHHcCCeEEEEe--CChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--------
Confidence 44554 67889999988 588888654 445566777776654444432 2222212223999987654 2
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
..+....+.||+||
T Consensus 240 -~~~~~~l~~l~~~G 253 (339)
T COG1064 240 -ATLEPSLKALRRGG 253 (339)
T ss_pred -hhHHHHHHHHhcCC
Confidence 35677899999999
No 255
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=79.96 E-value=8 Score=38.61 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=35.7
Q ss_pred hHHHHhhhccc-cCCCCceEEEEcCcccHHHHHHhh--cCCeEEEeccCCChhHHHHHH---HcC-----CCcEEec-cC
Q 017839 207 PVTQFLDLAKA-ANSVIRLGIDVGGATGSFAARMKL--YNITILTTTMNLGAPYSEAAA---LRG-----LVPLHVP-LQ 274 (365)
Q Consensus 207 ~I~~vL~~~p~-~~g~iRi~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~~~e~a~---~Rg-----~v~~~~g-~a 274 (365)
.|.++|..... .+..+ .+||||||.--.=..|.. .|-..+++++| ....+.|. ++. .|.++.. +.
T Consensus 88 ~i~DlL~~~~~~~~~~v-~glDIGTGAscIYpLLg~~~~~W~fvaTdID--~~sl~~A~~nv~~N~~L~~~I~l~~~~~~ 164 (299)
T PF05971_consen 88 WIADLLASSNPGIPEKV-RGLDIGTGASCIYPLLGAKLYGWSFVATDID--PKSLESARENVERNPNLESRIELRKQKNP 164 (299)
T ss_dssp HHHHHHT--TCGCS----EEEEES-TTTTHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHHT-T-TTTEEEEE--ST
T ss_pred HHHHHhhccccccccce-EeecCCccHHHHHHHHhhhhcCCeEEEecCC--HHHHHHHHHHHHhccccccceEEEEcCCc
Confidence 35556553221 11234 469999999854333332 37788888877 33333332 222 3444432 21
Q ss_pred ----CCCCCCCCccceeEEcchhh
Q 017839 275 ----QRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 275 ----e~LPF~D~SFDlV~s~~~L~ 294 (365)
..+--.++.||+..|+=-++
T Consensus 165 ~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 165 DNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp -SSTTTSTT--S-EEEEEE-----
T ss_pred cccchhhhcccceeeEEecCCccc
Confidence 12223456899999987664
No 256
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=79.77 E-value=1.2 Score=40.84 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=47.7
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHH----HHcCC---CcEEeccC-CCC---CCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAA----ALRGL---VPLHVPLQ-QRL---PLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a----~~Rg~---v~~~~g~a-e~L---PF~D~SFDlV~s~~ 291 (365)
.+||+-||||.++.....||+ .|+-++.| ....+.+ ..-+. +.++.+++ ..+ .-....||+|+.-=
T Consensus 45 ~vLDLFaGSGalGlEALSRGA~~v~fVE~~--~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 45 RVLDLFAGSGALGLEALSRGAKSVVFVEKN--RKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp EEEETT-TTSHHHHHHHHTT-SEEEEEES---HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred eEEEcCCccCccHHHHHhcCCCeEEEEECC--HHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 459999999999999999995 45544443 3332222 22232 34555553 222 22578999998753
Q ss_pred hhhcccChhhHHHHHHHHH--hhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVD--RVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~--RVLRPGG 317 (365)
-... ......++.-+. ..|+++|
T Consensus 123 PY~~---~~~~~~~l~~l~~~~~l~~~~ 147 (183)
T PF03602_consen 123 PYAK---GLYYEELLELLAENNLLNEDG 147 (183)
T ss_dssp STTS---CHHHHHHHHHHHHTTSEEEEE
T ss_pred Cccc---chHHHHHHHHHHHCCCCCCCE
Confidence 2211 111134555554 7888888
No 257
>KOG2730 consensus Methylase [General function prediction only]
Probab=78.45 E-value=1.9 Score=41.75 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=69.5
Q ss_pred cccccCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C
Q 017839 190 ASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G 265 (365)
Q Consensus 190 ~~~e~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g 265 (365)
+..|+.-|+++..-..+....+.+.-. . ..++|.-||.|..+...+.++..|++.++|. -...+++.. |
T Consensus 68 md~e~wfsvTpe~ia~~iA~~v~~~~~---~--~~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYG 140 (263)
T KOG2730|consen 68 MDREGWFSVTPEKIAEHIANRVVACMN---A--EVIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYG 140 (263)
T ss_pred ecccceEEeccHHHHHHHHHHHHHhcC---c--chhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeec
Confidence 445666677775422222222222111 1 2349999999999999999999998877763 222233221 3
Q ss_pred ---CCcEEecc----CCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 266 ---LVPLHVPL----QQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 266 ---~v~~~~g~----ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+.|.+|| +..|-|.-.-.|+|.-+- .|..+.-+..-+.++.-.++|-|
T Consensus 141 I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp---pwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 141 VPDRITFICGDFLDLASKLKADKIKYDCVFLSP---PWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCceeEEEechHHHHHHHHhhhhheeeeeecCC---CCCCcchhhhhhhhhhhhcchhH
Confidence 26688886 334555544466666544 46544445556667777777777
No 258
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=77.79 E-value=10 Score=36.06 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=47.4
Q ss_pred EEEEcCc-ccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCC-C-----CCCCCccceeEEcchhhcc
Q 017839 225 GIDVGGA-TGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQR-L-----PLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCG-tG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~-L-----PF~D~SFDlV~s~~~L~~w 296 (365)
+|..|+| .|..+..+++ .|+.|+.++- +....+.+.+.|. ..+....+. . ....+.+|+|+.....
T Consensus 169 vli~g~g~vG~~~~~la~~~G~~V~~~~~--s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~--- 242 (338)
T cd08254 169 VLVIGLGGLGLNAVQIAKAMGAAVIAVDI--KEEKLELAKELGA-DEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT--- 242 (338)
T ss_pred EEEECCcHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHHhCC-CEEEcCCCcCHHHHHHHhcCCCceEEEECCCC---
Confidence 3667876 4788777776 4777765432 3445555655554 222221111 0 1245678988753211
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
...+.++.|.|++||
T Consensus 243 ------~~~~~~~~~~l~~~G 257 (338)
T cd08254 243 ------QPTFEDAQKAVKPGG 257 (338)
T ss_pred ------HHHHHHHHHHhhcCC
Confidence 136778999999999
No 259
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=76.20 E-value=3.6 Score=39.13 Aligned_cols=87 Identities=16% Similarity=0.078 Sum_probs=51.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-----CC--CcEEeccCCCCCCCCCccceeEEcchhhc-
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-----GL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR- 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-----g~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~- 295 (365)
+.-|+|.|+|-++...++..-.|++...|. .....++. |. +.++.+|+..--| ..-|+|.|-. |..
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP---k~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm-lDTa 108 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDP---KRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM-LDTA 108 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCc---HHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-hhHH
Confidence 359999999998777666655677655552 22222332 33 3457788877777 6789999854 211
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+.+. -.++.-+..-||-.|
T Consensus 109 Li~E~q-VpV~n~vleFLr~d~ 129 (252)
T COG4076 109 LIEEKQ-VPVINAVLEFLRYDP 129 (252)
T ss_pred hhcccc-cHHHHHHHHHhhcCC
Confidence 111111 124445555667777
No 260
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=76.13 E-value=2.1 Score=40.99 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.2
Q ss_pred CceEEEEcCcccHHHHHHhhcC
Q 017839 222 IRLGIDVGGATGSFAARMKLYN 243 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~g 243 (365)
+.. .|||||-|.+...|+...
T Consensus 62 vef-aDIGCGyGGLlv~Lsp~f 82 (249)
T KOG3115|consen 62 VEF-ADIGCGYGGLLMKLAPKF 82 (249)
T ss_pred ceE-EeeccCccchhhhccccC
Confidence 444 999999999999999875
No 261
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=74.79 E-value=8.7 Score=36.51 Aligned_cols=132 Identities=14% Similarity=0.212 Sum_probs=73.4
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC---CCCCccceeEEcch---h-----
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP---LFDGVLDVVRCGHA---V----- 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP---F~D~SFDlV~s~~~---L----- 293 (365)
++|+=||.|.+..-|.+.|..++. +.|++....+.-... ......+|...+. ++. .+|+++.+.- +
T Consensus 3 ~~dlFsG~Gg~~~g~~~ag~~~~~-a~e~~~~a~~~y~~N-~~~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 3 VIDLFSGIGGFSLGLEQAGFEVVW-AVEIDPDACETYKAN-FPEVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp EEEET-TTTHHHHHHHHTTEEEEE-EEESSHHHHHHHHHH-HTEEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTST
T ss_pred EEEEccCccHHHHHHHhcCcEEEE-EeecCHHHHHhhhhc-ccccccccccccccccccc-cceEEEeccCCceEecccc
Confidence 499999999999999888866543 234444444433222 1155666665553 443 5999997642 1
Q ss_pred -hcccChh-hHHHHHHHHHhhhCCCC----------Cc--chhhhhHHHHHHhhCCceeeEEeecCCC---C-CCCceEE
Q 017839 294 -NRWIPVI-MMEFLFYDVDRVLRGGG----------KA--SDLENVYGPLIGKLGYKKVKWATANKPN---S-KNGEVYL 355 (365)
Q Consensus 294 -~~w~d~~-~le~aL~Ei~RVLRPGG----------~~--~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~y~ 355 (365)
....+.. .+=..+.++-+.+||.- .. ....+.+...++.+||. +.|.+..-.| + .+..+|+
T Consensus 80 ~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~-v~~~vlna~~yGvPQ~R~R~fi 158 (335)
T PF00145_consen 80 RKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYN-VQWRVLNAADYGVPQNRERVFI 158 (335)
T ss_dssp HHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEE-EEEEEEEGGGGTSSBE-EEEEE
T ss_pred ccccccccchhhHHHHHHHhhccceEEEecccceeecccccccccccccccccccee-ehhccccHhhCCCCCceeeEEE
Confidence 1111221 12234455556667776 11 11123456788899997 6777666555 2 4667888
Q ss_pred EEeee
Q 017839 356 TALLQ 360 (365)
Q Consensus 356 sall~ 360 (365)
-|+..
T Consensus 159 vg~r~ 163 (335)
T PF00145_consen 159 VGIRK 163 (335)
T ss_dssp EEEEG
T ss_pred EEECC
Confidence 77764
No 262
>PRK10742 putative methyltransferase; Provisional
Probab=74.72 E-value=8 Score=37.70 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=61.6
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCC-ChhHHHHHHHc------------CCCcEEeccC
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNL-GAPYSEAAALR------------GLVPLHVPLQ 274 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl-~~~~~e~a~~R------------g~v~~~~g~a 274 (365)
|.+...+++ |..-.+||.=+|+|..+..++.+|..|+.++-+. .....+...++ ..+.++.+++
T Consensus 78 l~kAvglk~---g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 78 VAKAVGIKG---DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHhCCCC---CCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 344445544 4322579999999999999999998877654331 01111111111 1134455553
Q ss_pred CC-CCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCC-CCCcchhhhhHHHHHHhhC
Q 017839 275 QR-LPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRG-GGKASDLENVYGPLIGKLG 334 (365)
Q Consensus 275 e~-LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRP-GG~~~~l~~~~~~~l~~~g 334 (365)
.+ |.-...+||+|+.-=.+.| ..... ...+|| |+++. -|...+-++.+...++...
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~-~~ksa--~vkk~m-r~~~~l~g~d~d~~~lL~~Al~~A~ 212 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPH-KQKSA--LVKKEM-RVFQSLVGPDLDADGLLEPARLLAT 212 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCC-Ccccc--chhhhH-HHHHHhcCCCCChHHHHHHHHHhcC
Confidence 22 2222337999997555533 21111 233444 33322 3533444454555555544
No 263
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=74.17 E-value=12 Score=37.41 Aligned_cols=92 Identities=16% Similarity=-0.038 Sum_probs=50.1
Q ss_pred eEEEEcCcc-cHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHcCCCcEEeccCC-----CC-CC-CCCccceeEEcchh
Q 017839 224 LGIDVGGAT-GSFAARMKLY-NI-TILTTTMNLGAPYSEAAALRGLVPLHVPLQQ-----RL-PL-FDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGt-G~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae-----~L-PF-~D~SFDlV~s~~~L 293 (365)
.+|.+|||+ |..+..+++. |+ .++.++. +....+++.+.+-...+..... .+ .+ .+..+|+|+-.-.-
T Consensus 187 ~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~ 264 (386)
T cd08283 187 TVAVWGCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGM 264 (386)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCC
Confidence 359999988 8888888774 65 4665433 3455666666532222211111 11 22 23368888753211
Q ss_pred -----------hcc-cChhhHHHHHHHHHhhhCCCC
Q 017839 294 -----------NRW-IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 -----------~~w-~d~~~le~aL~Ei~RVLRPGG 317 (365)
.|. .+..+....+.++.|.|+|||
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 300 (386)
T cd08283 265 EAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGG 300 (386)
T ss_pred cccccccccccccccccccCchHHHHHHHHHhccCC
Confidence 000 000011247899999999999
No 264
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=72.20 E-value=2 Score=42.41 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=54.2
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC----CCcEEeccCCC-CC-C-CCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG----LVPLHVPLQQR-LP-L-FDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg----~v~~~~g~ae~-LP-F-~D~SFDlV~s~~ 291 (365)
.+||+=|=||.|+...+..|+ .|++ +|.++...+.+.+ .| .+.++.+|+-. |. . ..+.||+|++-=
T Consensus 126 rvLnlFsYTGgfsv~Aa~gGA~~v~~--VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 126 RVLNLFSYTGGFSVAAAAGGAKEVVS--VDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp EEEEET-TTTHHHHHHHHTTESEEEE--EES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred ceEEecCCCCHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 459999999999998887775 5665 4555666655433 23 24566665421 11 0 246899999621
Q ss_pred ---hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 ---AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ---~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.=..+.-..+....+....++|+|||
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG 232 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGG 232 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11111112234567788899999999
No 265
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=70.29 E-value=56 Score=29.55 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=64.8
Q ss_pred EcCcccHHHHHHhhc---CCeEEEeccCCChhHH----------HHHHHcCCCcEEeccCCCCC----CCCCccceeEEc
Q 017839 228 VGGATGSFAARMKLY---NITILTTTMNLGAPYS----------EAAALRGLVPLHVPLQQRLP----LFDGVLDVVRCG 290 (365)
Q Consensus 228 IGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~----------e~a~~Rg~v~~~~g~ae~LP----F~D~SFDlV~s~ 290 (365)
||=|-=+|+..|++. +..++++++|-..... +.....|..-++.-|+.+|. ...+.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 455666788888875 4567777777322111 12223343222333666553 467999999977
Q ss_pred chhhccc----------ChhhHHHHHHHHHhhhCCCC-------Cc--chhhhhHHHHHHhhCCceee
Q 017839 291 HAVNRWI----------PVIMMEFLFYDVDRVLRGGG-------KA--SDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 291 ~~L~~w~----------d~~~le~aL~Ei~RVLRPGG-------~~--~~l~~~~~~~l~~~gfk~i~ 339 (365)
+--..+. ....+..++....++|+++| .. ...++ ...+.++.||.-++
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~-i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWN-IEELAAEAGLVLVR 149 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcccc-HHHHHHhcCCEEEE
Confidence 6311100 11345667889999999999 11 12343 45677888876553
No 266
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=70.01 E-value=0.8 Score=37.13 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=30.6
Q ss_pred EEEcCcccHHHHHHhhc---C--CeEEEeccCCC-hhHHHHHHHc---CCCcEEeccCCC-CC-CCCCccceeEEcchhh
Q 017839 226 IDVGGATGSFAARMKLY---N--ITILTTTMNLG-APYSEAAALR---GLVPLHVPLQQR-LP-LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 226 LDIGCGtG~faa~Lae~---g--v~Vv~~~ldl~-~~~~e~a~~R---g~v~~~~g~ae~-LP-F~D~SFDlV~s~~~L~ 294 (365)
|+||+..|..+..|++. + .++++++.... ....+.+++. ..+.++.++... ++ +.++.||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888777753 2 24555444321 0222333222 346677775432 22 23789999996432
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|- .+.....+..+.+.|+|||
T Consensus 79 H~--~~~~~~dl~~~~~~l~~gg 99 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGG 99 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEE
T ss_pred CC--HHHHHHHHHHHHHHcCCCe
Confidence 21 1223457788889999998
No 267
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=69.23 E-value=4.2 Score=36.42 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhCCCC------Ccchhhh-hHHHHHHhhC-CceeeEEeecCC
Q 017839 302 MEFLFYDVDRVLRGGG------KASDLEN-VYGPLIGKLG-YKKVKWATANKP 346 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG------~~~~l~~-~~~~~l~~~g-fk~i~w~v~~K~ 346 (365)
+...+.|++||||||| ....... ....+.+.+| |....+.+-.|.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheeccceeEec
Confidence 4578999999999999 2222222 3445667778 876655555554
No 268
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=68.85 E-value=34 Score=34.00 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=75.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-CCCcEEeccCC-----CCCCCCCccceeEEcchhhc--
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQ-----RLPLFDGVLDVVRCGHAVNR-- 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae-----~LPF~D~SFDlV~s~~~L~~-- 295 (365)
+++|+=||.|.+..-+.+.|.+++. ..|+++...+.-... ....+..++.. .++.. .+|+++.+.-=..
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~-a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~--~~DvligGpPCQ~FS 81 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVF-ANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKS--DVDVLIGGPPCQDFS 81 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEE-EEecCHHHHHHHHHhCCCCceeechHhhcChhhcccc--CCCEEEeCCCCcchh
Confidence 4599999999999888888877664 234444443332222 11233444433 33222 8999997651111
Q ss_pred ------ccChh--hHHHHHHHHHhhhCCCC-----------CcchhhhhHHHHHHhhCCceeeEEeecCCC----CCCCc
Q 017839 296 ------WIPVI--MMEFLFYDVDRVLRGGG-----------KASDLENVYGPLIGKLGYKKVKWATANKPN----SKNGE 352 (365)
Q Consensus 296 ------w~d~~--~le~aL~Ei~RVLRPGG-----------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d----~~~~~ 352 (365)
..++. .+-..+.++-..++|.- ......+.+...++.+||. +.|.+-.-.| ..+..
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~-~~~~ilna~dyGvPQ~ReR 160 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYG-VEFNILNAADYGVPQSRER 160 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCc-chHheeeHHhcCCCCCccE
Confidence 11211 11133445555566744 1112334577899999999 7777665555 25778
Q ss_pred eEEEEeee
Q 017839 353 VYLTALLQ 360 (365)
Q Consensus 353 ~y~sall~ 360 (365)
+|+.+...
T Consensus 161 vfiig~~~ 168 (328)
T COG0270 161 VFIVGFRR 168 (328)
T ss_pred EEEEEecC
Confidence 88887553
No 269
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=67.63 E-value=11 Score=36.49 Aligned_cols=83 Identities=13% Similarity=0.018 Sum_probs=41.2
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhH---H----HHHHHc--------CCCcEEec
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPY---S----EAAALR--------GLVPLHVP 272 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~---~----e~a~~R--------g~v~~~~g 272 (365)
+.+...+++ |....|||.=+|-|.=|..++..|..|++..-+ ... . +.+... ..+.++.+
T Consensus 65 l~kA~Glk~---~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErs--pvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 65 LAKAVGLKP---GMRPSVLDATAGLGRDAFVLASLGCKVTGLERS--PVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHTT-BT---TB---EEETT-TTSHHHHHHHHHT--EEEEE----HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHhCCCC---CCCCEEEECCCcchHHHHHHHccCCeEEEEECC--HHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 444455554 322356999999999998888889888765332 111 1 111111 12456777
Q ss_pred cCCC-CCCCCCccceeEEcchhhc
Q 017839 273 LQQR-LPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 273 ~ae~-LPF~D~SFDlV~s~~~L~~ 295 (365)
++.. |+.++++||+|..-=++.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 6543 6777999999998666543
No 270
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=67.18 E-value=5.8 Score=40.71 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=40.2
Q ss_pred CcEEeccCCC-CC-CCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 267 VPLHVPLQQR-LP-LFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 267 v~~~~g~ae~-LP-F~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.++.++.+. |- .++++||.++-+... .|.+++.++..+.++.|+++|||
T Consensus 277 v~i~t~si~~~L~~~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pga 328 (380)
T PF11899_consen 277 VRIHTDSIEEVLRRLPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGA 328 (380)
T ss_pred EEEEeccHHHHHHhCCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCC
Confidence 5556664332 21 468999999999988 68888888999999999999999
No 271
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.70 E-value=8.7 Score=37.58 Aligned_cols=89 Identities=18% Similarity=0.289 Sum_probs=52.0
Q ss_pred CceEEEEcCcccHHHHHHhhc--------CC---eEEEeccCCChhHHHHHHHcCCCcEEeccCCC-------CC-CCCC
Q 017839 222 IRLGIDVGGATGSFAARMKLY--------NI---TILTTTMNLGAPYSEAAALRGLVPLHVPLQQR-------LP-LFDG 282 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--------gv---~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~-------LP-F~D~ 282 (365)
++.++|++...|++...|.++ +. .|+++++- +| +--.|++. +++++.. +- |...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ---~M---aPI~GV~q-lq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQ---PM---APIEGVIQ-LQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecc---cC---CccCceEE-eecccCCHhHHHHHHHHhCCC
Confidence 445699999999999988775 11 15543332 22 22234332 2233221 22 4555
Q ss_pred ccceeEEcch-----hhcc---cChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHA-----VNRW---IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~-----L~~w---~d~~~le~aL~Ei~RVLRPGG 317 (365)
.-|+|+|-.+ +|.+ ...+.+-.+|.=..+||||||
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg 157 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGG 157 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCC
Confidence 8899988664 3222 122344566777889999999
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=65.05 E-value=14 Score=36.00 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=40.1
Q ss_pred CceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 222 IRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
...|+|||||.=-++..+... +.+.++.++| ..+.+++.+ -|. ......|...=+ +...-|+....-++.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID--~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDID--SQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB--HHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCC--HHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHHH
Confidence 345699999999999877655 4677776555 566555432 121 123333322222 567899999877663
No 273
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=60.44 E-value=19 Score=35.05 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=45.5
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHH--------HHcC-CCc---EEeccCCCCCCCCCc-cceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAA--------ALRG-LVP---LHVPLQQRLPLFDGV-LDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a--------~~Rg-~v~---~~~g~ae~LPF~D~S-FDlV~s 289 (365)
.+|.+|.|||-.+..++-. +..++-++.-.--...++. .+.| .+. +.-+.+...-|.-.- ||+|.+
T Consensus 89 ~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlila 168 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILA 168 (248)
T ss_pred eEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEE
Confidence 3599999999666655553 4555433321100111111 1122 111 122222222222222 999999
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.|+.+=. ..+-++.=+.-.|-.+|
T Consensus 169 sDvvy~~~---~~e~Lv~tla~ll~~~~ 193 (248)
T KOG2793|consen 169 SDVVYEEE---SFEGLVKTLAFLLAKDG 193 (248)
T ss_pred eeeeecCC---cchhHHHHHHHHHhcCC
Confidence 99985432 23345556666677777
No 274
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=58.60 E-value=11 Score=39.96 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=46.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCC-CCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLF-DGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~-D~SFDlV~s~~~L~~ 295 (365)
.+||||.|||-++.+.++.|+.-++ +++.=.||...+.. .| .+.++.--...+-.. ...-|+++.-...-.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vt-A~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVT-ACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEE-eehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 4699999999998777777754433 34434567654432 22 233322211112111 233555554443322
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+....+ -.+++.+|.|-..|
T Consensus 148 ligeGal-ps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 148 LIGEGAL-PSLQHAHDMLLVDN 168 (636)
T ss_pred hhccccc-hhHHHHHHHhcccC
Confidence 2222222 35667776665555
No 275
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=57.46 E-value=25 Score=38.08 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=38.1
Q ss_pred EEeccCCC-CCCCCCccceeEEcchh------hcccChhhHHHHHHHHHhhhCCCC---CcchhhhhHHHHHHhhCCcee
Q 017839 269 LHVPLQQR-LPLFDGVLDVVRCGHAV------NRWIPVIMMEFLFYDVDRVLRGGG---KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 269 ~~~g~ae~-LPF~D~SFDlV~s~~~L------~~w~d~~~le~aL~Ei~RVLRPGG---~~~~l~~~~~~~l~~~gfk~i 338 (365)
++.||+.. ++--+..||+|+--. | +-|. +.++++|.|.++||| +... ....+.-+...||+.-
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~-----~~~~~~l~~~~~~~~~~~t~t~-a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWS-----PNLFNALARLARPGATLATFTS-AGFVRRGLQEAGFTVR 223 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCC-CCCccChhhcc-----HHHHHHHHHHhCCCCEEEEeeh-HHHHHHHHHHcCCeee
Confidence 45566532 332235699998532 2 1254 258999999999999 2211 1224557888999643
No 276
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=56.97 E-value=78 Score=35.18 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=81.2
Q ss_pred CccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcC--CeEE--------EeccCCChhH-HHHHHHcC-----C
Q 017839 203 ELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYN--ITIL--------TTTMNLGAPY-SEAAALRG-----L 266 (365)
Q Consensus 203 ~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~g--v~Vv--------~~~ldl~~~~-~e~a~~Rg-----~ 266 (365)
|.+|-+..+|.... -..|-.|=.|=|.|..++.+.+.+ ..++ +.++.-+.|. ...+.+-| .
T Consensus 307 GAHYKlRsIL~~~~---i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rc 383 (675)
T PF14314_consen 307 GAHYKLRSILKNLN---IKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRC 383 (675)
T ss_pred cchhhHHHHHHhcC---CCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCccccee
Confidence 67887888776433 223566888889999999998764 2222 1111111110 01111111 1
Q ss_pred CcEE---e--ccCCCC---CC-------CCCccceeEEcchhhcccChhhHHHH-HHHHHhhhCCCC------Ccchhhh
Q 017839 267 VPLH---V--PLQQRL---PL-------FDGVLDVVRCGHAVNRWIPVIMMEFL-FYDVDRVLRGGG------KASDLEN 324 (365)
Q Consensus 267 v~~~---~--g~ae~L---PF-------~D~SFDlV~s~~~L~~w~d~~~le~a-L~Ei~RVLRPGG------~~~~l~~ 324 (365)
|.+. . +|..+. .| ..-++|+|++-.=...-.--..++.. -.-+.++|.++| ....+..
T Consensus 384 vn~~~~W~~pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~ 463 (675)
T PF14314_consen 384 VNLDTCWEHPSDLSDPETWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLS 463 (675)
T ss_pred ecchhhhcCccccCCccHHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhc
Confidence 2221 1 111111 11 23478998875422111101122333 345668999999 2222222
Q ss_pred hHHHHHHhhC--CceeeEEeecCCCCCCCceEEEEeeecCC
Q 017839 325 VYGPLIGKLG--YKKVKWATANKPNSKNGEVYLTALLQKPV 363 (365)
Q Consensus 325 ~~~~~l~~~g--fk~i~w~v~~K~d~~~~~~y~sall~KP~ 363 (365)
.=.++++.+| |+.+.+....-..+...|||+ |.+|+.
T Consensus 464 ~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYl--v~~~~~ 502 (675)
T PF14314_consen 464 PDYNILDLLGRYFKSVELVQTQFSSSFTSEVYL--VFQKLK 502 (675)
T ss_pred chhhHHHHHHhhcCceEEEECCCCCCCceEEEE--EEeccc
Confidence 1124566665 899998877777678999998 666664
No 277
>PRK10458 DNA cytosine methylase; Provisional
Probab=55.30 E-value=1.4e+02 Score=31.77 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=25.5
Q ss_pred CCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHH
Q 017839 221 VIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSE 259 (365)
Q Consensus 221 ~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e 259 (365)
.+++ +|+=||.|.+..-+...|..++. +.|.+....+
T Consensus 88 ~~~~-iDLFsGiGGl~lGfe~aG~~~v~-a~Eid~~A~~ 124 (467)
T PRK10458 88 AFRF-IDLFAGIGGIRRGFEAIGGQCVF-TSEWNKHAVR 124 (467)
T ss_pred CceE-EEeCcCccHHHHHHHHcCCEEEE-EEechHHHHH
Confidence 4555 99999999999888777877653 2344343333
No 278
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=54.75 E-value=37 Score=33.16 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=52.3
Q ss_pred CCCCCCCCCCChHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCccccchhcccCCCCCCC
Q 017839 109 SYTPFTLCPHDTDLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQKSPNLGFD 188 (365)
Q Consensus 109 ~y~~~~~Cp~d~~~~~~l~~r~C~plprrrCl~~~p~~~p~p~p~s~w~~~p~~~~~~W~~~~~~~~~~l~~~~~~~gf~ 188 (365)
.+.+..+|-||..+|.+|.+-||- ++-| | ..|=.+ ++|..
T Consensus 130 GF~VlPY~~dD~v~arrLee~Gca------avMP--------l------~aPIGS--------------------g~G~~ 169 (262)
T COG2022 130 GFVVLPYTTDDPVLARRLEEAGCA------AVMP--------L------GAPIGS--------------------GLGLQ 169 (262)
T ss_pred CCEEeeccCCCHHHHHHHHhcCce------Eecc--------c------cccccC--------------------CcCcC
Confidence 678889999999999999999992 2222 3 222221 23321
Q ss_pred ccccccCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEE
Q 017839 189 PASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITIL 247 (365)
Q Consensus 189 ~~~~e~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv 247 (365)
+.+.|..+++. -.+.+++|.|-|+-+-++...|.|+..+
T Consensus 170 ---------------n~~~l~iiie~-----a~VPviVDAGiG~pSdAa~aMElG~DaV 208 (262)
T COG2022 170 ---------------NPYNLEIIIEE-----ADVPVIVDAGIGTPSDAAQAMELGADAV 208 (262)
T ss_pred ---------------CHHHHHHHHHh-----CCCCEEEeCCCCChhHHHHHHhccccee
Confidence 12223333332 2356789999999999999889886654
No 279
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=53.93 E-value=18 Score=35.27 Aligned_cols=108 Identities=17% Similarity=0.283 Sum_probs=60.6
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcCCC--cEEeccCCCC-C-CCCCccceeE----
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRGLV--PLHVPLQQRL-P-LFDGVLDVVR---- 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg~v--~~~~g~ae~L-P-F~D~SFDlV~---- 288 (365)
.|||+++|.|.-+..+++. ...+++.+++ ....+.+ ..-|.- .....++..+ + .....||.|.
T Consensus 88 ~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~--~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 88 RVLDMCAAPGGKTTHLAELMGNKGEIVANDIS--PKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp EEEESSCTTSHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECS
T ss_pred cccccccCCCCceeeeeecccchhHHHHhccC--HHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCC
Confidence 3699999999988888775 2466655444 3333222 223542 2333454444 2 2344699998
Q ss_pred Ecch--hhc-----c--cCh------hhHHHHHHHHHhhh----CCCC---------CcchhhhhHHHHHHhh
Q 017839 289 CGHA--VNR-----W--IPV------IMMEFLFYDVDRVL----RGGG---------KASDLENVYGPLIGKL 333 (365)
Q Consensus 289 s~~~--L~~-----w--~d~------~~le~aL~Ei~RVL----RPGG---------~~~~l~~~~~~~l~~~ 333 (365)
|+.. +.. | .+. ......|....+.+ |||| ..+|.+++....+++.
T Consensus 166 CSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 166 CSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp CCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred ccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 3332 221 1 111 11235688899999 9999 3455555555566654
No 280
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=53.42 E-value=33 Score=30.57 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=32.2
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA 261 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a 261 (365)
+++.++.... .+|. +|||-=||+|+.+....+.|-..++.+++ ....+.|
T Consensus 180 l~~~lI~~~t-~~gd--iVlDpF~GSGTT~~aa~~l~R~~ig~E~~--~~y~~~a 229 (231)
T PF01555_consen 180 LIERLIKAST-NPGD--IVLDPFAGSGTTAVAAEELGRRYIGIEID--EEYCEIA 229 (231)
T ss_dssp HHHHHHHHHS--TT---EEEETT-TTTHHHHHHHHTT-EEEEEESS--HHHHHHH
T ss_pred HHHHHHHhhh-ccce--eeehhhhccChHHHHHHHcCCeEEEEeCC--HHHHHHh
Confidence 5666665532 1254 67999999999988888888888876554 5554444
No 281
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=53.10 E-value=41 Score=33.15 Aligned_cols=85 Identities=21% Similarity=0.164 Sum_probs=56.0
Q ss_pred hhHHhhccCCCCCCCCCCChHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCccccchhcc
Q 017839 101 PDLLHNYMSYTPFTLCPHDTDLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQ 180 (365)
Q Consensus 101 ~~~l~~~m~y~~~~~Cp~d~~~~~~l~~r~C~plprrrCl~~~p~~~p~p~p~s~w~~~p~~~~~~W~~~~~~~~~~l~~ 180 (365)
..+.+ -.+.|..+|-||..+|++|.+-||.- +-| | ..|=.
T Consensus 131 e~Lv~--eGF~VlPY~~~D~v~a~rLed~Gc~a------VMP--------l------gsPIG------------------ 170 (267)
T CHL00162 131 EFLVK--KGFTVLPYINADPMLAKHLEDIGCAT------VMP--------L------GSPIG------------------ 170 (267)
T ss_pred HHHHH--CCCEEeecCCCCHHHHHHHHHcCCeE------Eee--------c------cCccc------------------
Confidence 34444 58899999999999999999999932 222 2 22222
Q ss_pred cCCCCCCCccccccCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEE
Q 017839 181 KSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITIL 247 (365)
Q Consensus 181 ~~~~~gf~~~~~e~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv 247 (365)
+++|-. +.+.|..+++. ..+.+++|-|-|+++-++...+.|...+
T Consensus 171 --Sg~Gl~---------------n~~~l~~i~e~-----~~vpVivdAGIgt~sDa~~AmElGaDgV 215 (267)
T CHL00162 171 --SGQGLQ---------------NLLNLQIIIEN-----AKIPVIIDAGIGTPSEASQAMELGASGV 215 (267)
T ss_pred --CCCCCC---------------CHHHHHHHHHc-----CCCcEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 223321 12234444432 2367889999999999999989886544
No 282
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=47.91 E-value=59 Score=31.23 Aligned_cols=78 Identities=18% Similarity=0.046 Sum_probs=44.8
Q ss_pred EcCcc--cHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHH
Q 017839 228 VGGAT--GSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFL 305 (365)
Q Consensus 228 IGCGt--G~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~a 305 (365)
||+|. |.++..|.+.|..|.+.+. +....+.+.++|.+.....+.+. -...|+|+..--. ......
T Consensus 6 IG~G~mG~sla~~L~~~g~~V~~~d~--~~~~~~~a~~~g~~~~~~~~~~~----~~~aDlVilavp~------~~~~~~ 73 (279)
T PRK07417 6 VGLGLIGGSLGLDLRSLGHTVYGVSR--RESTCERAIERGLVDEASTDLSL----LKDCDLVILALPI------GLLLPP 73 (279)
T ss_pred EeecHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHCCCcccccCCHhH----hcCCCEEEEcCCH------HHHHHH
Confidence 67775 5678888888888776543 34444555566653221111111 1346888755322 223456
Q ss_pred HHHHHhhhCCCC
Q 017839 306 FYDVDRVLRGGG 317 (365)
Q Consensus 306 L~Ei~RVLRPGG 317 (365)
+.++...++|+-
T Consensus 74 ~~~l~~~l~~~~ 85 (279)
T PRK07417 74 SEQLIPALPPEA 85 (279)
T ss_pred HHHHHHhCCCCc
Confidence 778888888776
No 283
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=47.69 E-value=79 Score=33.88 Aligned_cols=89 Identities=8% Similarity=0.061 Sum_probs=49.1
Q ss_pred eEEEEcCcccH-HHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCC----------CC----------CCCC
Q 017839 224 LGIDVGGATGS-FAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQ----------RL----------PLFD 281 (365)
Q Consensus 224 i~LDIGCGtG~-faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae----------~L----------PF~D 281 (365)
.++=+|||+-. .+...++ .|+.|+.. |......+.+.+-|.--......+ .+ .|.+
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~--D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAF--DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 35899999854 5555554 48877654 444555566665553111111111 11 1111
Q ss_pred --CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 282 --GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 282 --~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+|+|+..-.. ...........|+-+.+||||
T Consensus 245 ~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGg 279 (509)
T PRK09424 245 QAKEVDIIITTALI---PGKPAPKLITAEMVASMKPGS 279 (509)
T ss_pred ccCCCCEEEECCCC---CcccCcchHHHHHHHhcCCCC
Confidence 469999976643 211112223589999999999
No 284
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=47.54 E-value=66 Score=31.80 Aligned_cols=90 Identities=11% Similarity=-0.010 Sum_probs=44.9
Q ss_pred eEEEEcCcccHHHHHH-hhc-C--CeEEEeccCCChhHHHHH----HHc----CCCcEEeccCCCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARM-KLY-N--ITILTTTMNLGAPYSEAA----ALR----GLVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~L-ae~-g--v~Vv~~~ldl~~~~~e~a----~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.++=||+|.=-++..+ +++ + ..+.+.++| +..++.+ .+. ..+.|+.+++...+..-..||+|+..-
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d--~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHGPGARVHNIDID--PEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HTT--EEEEEESS--HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred eEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999976655444 443 3 445554444 4444433 211 236788888877776667999999655
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-. .. +.+..+..+..+.+.++||.
T Consensus 201 lV-g~-~~e~K~~Il~~l~~~m~~ga 224 (276)
T PF03059_consen 201 LV-GM-DAEPKEEILEHLAKHMAPGA 224 (276)
T ss_dssp T--S-----SHHHHHHHHHHHS-TTS
T ss_pred hc-cc-ccchHHHHHHHHHhhCCCCc
Confidence 33 11 22234579999999999999
No 285
>PRK11524 putative methyltransferase; Provisional
Probab=46.69 E-value=47 Score=32.19 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=36.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR 264 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R 264 (365)
+++.++.... .+|. +|||-=||+|+.+....+.|-..+|.++| ....+.+..|
T Consensus 197 L~erlI~~~S-~~GD--~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~--~~Y~~~a~~R 249 (284)
T PRK11524 197 LLKRIILASS-NPGD--IVLDPFAGSFTTGAVAKASGRKFIGIEIN--SEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHhC-CCCC--EEEECCCCCcHHHHHHHHcCCCEEEEeCC--HHHHHHHHHH
Confidence 5566665432 1254 57999999999888777778777876554 5566666655
No 286
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=46.48 E-value=77 Score=33.54 Aligned_cols=136 Identities=21% Similarity=0.177 Sum_probs=78.0
Q ss_pred eEEEEcC-ccc------HHHHHHhhcCCeEEEeccCCChh--HH--HHHHHcCCCcEEeccCCCCC----------CCCC
Q 017839 224 LGIDVGG-ATG------SFAARMKLYNITILTTTMNLGAP--YS--EAAALRGLVPLHVPLQQRLP----------LFDG 282 (365)
Q Consensus 224 i~LDIGC-GtG------~faa~Lae~gv~Vv~~~ldl~~~--~~--e~a~~Rg~v~~~~g~ae~LP----------F~D~ 282 (365)
+||=+|= |+| .+|.+|.++|..|.-++.|.-.+ .. +..+++-.++|+....+.=| |.++
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~ 181 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEE 181 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHc
Confidence 4577774 555 46777777776554444553222 22 22233334677765433333 5678
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC--------CcchhhhhHHHHHHhhCCceeeEEeecCCCC-CCCce
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG--------KASDLENVYGPLIGKLGYKKVKWATANKPNS-KNGEV 353 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~-~~~~~ 353 (365)
.||+|+.-.+-+|-.|.+.+ .-+.+|.++++|.= .+.+...+-...=++++.. =++..|.|. .+++.
T Consensus 182 ~~DvvIvDTAGRl~ide~Lm-~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it---GvIlTKlDGdaRGGa 257 (451)
T COG0541 182 GYDVVIVDTAGRLHIDEELM-DELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT---GVILTKLDGDARGGA 257 (451)
T ss_pred CCCEEEEeCCCcccccHHHH-HHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc---eEEEEcccCCCcchH
Confidence 89999987776666665544 46889999999988 3444333233334566544 346788885 34443
Q ss_pred EEE--EeeecCC
Q 017839 354 YLT--ALLQKPV 363 (365)
Q Consensus 354 y~s--all~KP~ 363 (365)
=|| ++..||+
T Consensus 258 ALS~~~~tg~PI 269 (451)
T COG0541 258 ALSARAITGKPI 269 (451)
T ss_pred HHhhHHHHCCCe
Confidence 333 3344553
No 287
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=46.12 E-value=94 Score=30.26 Aligned_cols=82 Identities=16% Similarity=0.018 Sum_probs=43.9
Q ss_pred EEEEcCc-ccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHcCCCcEEec---cCCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGA-TGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALRGLVPLHVP---LQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCG-tG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g---~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
+|=+||| .|.++..+++. |+ .|+.++. +....+++.+.|.-.++.. +..++.-..+.||+|+-.-.-
T Consensus 173 VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~----- 245 (343)
T PRK09880 173 VFVSGVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH----- 245 (343)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-----
Confidence 3556764 46666667664 76 4654433 3445566666664222211 111111112348888743221
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
...+.+..+.|||||
T Consensus 246 ----~~~~~~~~~~l~~~G 260 (343)
T PRK09880 246 ----PSSINTCLEVTRAKG 260 (343)
T ss_pred ----HHHHHHHHHHhhcCC
Confidence 135678889999999
No 288
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=45.51 E-value=40 Score=27.64 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=47.1
Q ss_pred cccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEeccCC----CC-C-CCCCccceeEEcchhhcccChhhHH
Q 017839 231 ATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQ----RL-P-LFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 231 GtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae----~L-P-F~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
|.|.++..+++. |..|+.++. ++...+++.+-|.-.++..... ++ . +.++.+|+|+-.-.- .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~--~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---------~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDR--SEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---------G 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEES--SHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---------H
T ss_pred ChHHHHHHHHHHcCCEEEEEEC--CHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---------H
Confidence 578888888874 777776554 3555677776663222222211 11 1 344689988743220 1
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
..+.+...+|||||
T Consensus 70 ~~~~~~~~~l~~~G 83 (130)
T PF00107_consen 70 DTLQEAIKLLRPGG 83 (130)
T ss_dssp HHHHHHHHHEEEEE
T ss_pred HHHHHHHHHhccCC
Confidence 47788999999999
No 289
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=43.58 E-value=1.2e+02 Score=29.14 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=43.8
Q ss_pred EEEEcCcc-cHHHHHHhh-cCC-eEEEeccCCChhHHHHHHHcCCCcEEecc---CCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGAT-GSFAARMKL-YNI-TILTTTMNLGAPYSEAAALRGLVPLHVPL---QQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGt-G~faa~Lae-~gv-~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~---ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
+|-.|||. |..+..+++ .|+ .++.++- +....+.+...|.-.++... ..++.-..+.||+|+.....
T Consensus 169 VLI~g~g~vG~~~~~lak~~G~~~v~~~~~--s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~----- 241 (339)
T cd08232 169 VLVTGAGPIGALVVAAARRAGAAEIVATDL--ADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA----- 241 (339)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC-----
Confidence 36678765 667766665 477 5554432 23344444444432222111 11222222348888754321
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
...+.++.+.|+++|
T Consensus 242 ----~~~~~~~~~~L~~~G 256 (339)
T cd08232 242 ----PAALASALRVVRPGG 256 (339)
T ss_pred ----HHHHHHHHHHHhcCC
Confidence 135678899999999
No 290
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=42.99 E-value=99 Score=30.87 Aligned_cols=83 Identities=20% Similarity=0.143 Sum_probs=50.1
Q ss_pred eEEEEcCcc-cHHHHHHhhc-C-CeEEEeccCCChhHHHHHHHcCCCcEEeccCCC------CCCCC-CccceeEEcchh
Q 017839 224 LGIDVGGAT-GSFAARMKLY-N-ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQR------LPLFD-GVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGt-G~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~------LPF~D-~SFDlV~s~~~L 293 (365)
.++=+|||+ |-++..+++. | .+|+.+ |.+....+++++.+-........+. +-... .-||+|+=.-..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 568999997 7777777764 5 455543 5556667777664433322222221 11112 368988833221
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..++.++.+++||||
T Consensus 249 ---------~~~~~~ai~~~r~gG 263 (350)
T COG1063 249 ---------PPALDQALEALRPGG 263 (350)
T ss_pred ---------HHHHHHHHHHhcCCC
Confidence 137889999999999
No 291
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=42.54 E-value=1.1e+02 Score=32.22 Aligned_cols=116 Identities=21% Similarity=0.187 Sum_probs=65.8
Q ss_pred CceEEEEcCcccHHHHHHhhcC-C-eEEEeccCCChhHHHHHHH----c----C-----CCcEEeccCCC-CCCCCCccc
Q 017839 222 IRLGIDVGGATGSFAARMKLYN-I-TILTTTMNLGAPYSEAAAL----R----G-----LVPLHVPLQQR-LPLFDGVLD 285 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~g-v-~Vv~~~ldl~~~~~e~a~~----R----g-----~v~~~~g~ae~-LPF~D~SFD 285 (365)
.|.+|=+|.|.|--++.+.+.- + +|.-++ ++..|.|++.. | | .+.++..|+-+ +-=..+.||
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVd--LDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVD--LDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEe--cCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4677999999999999998863 3 333334 44677766541 1 1 13344444422 333456899
Q ss_pred eeEEcchhhcccChhh--H-----HHHHHHHHhhhCCCC-----Ccch--hhhh---HHHHHHhhCCceeeEEeec
Q 017839 286 VVRCGHAVNRWIPVIM--M-----EFLFYDVDRVLRGGG-----KASD--LENV---YGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~--l-----e~aL~Ei~RVLRPGG-----~~~~--l~~~---~~~~l~~~gfk~i~w~v~~ 344 (365)
.|+.-. .|+.. + ..+..-..|-|+++| .... ..+. ....++..||...-.++.-
T Consensus 368 ~vIVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~V 438 (508)
T COG4262 368 VVIVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHV 438 (508)
T ss_pred EEEEeC-----CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEec
Confidence 988632 22110 0 124555678889999 1110 1111 2356889998776555433
No 292
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=41.88 E-value=28 Score=36.15 Aligned_cols=43 Identities=14% Similarity=0.012 Sum_probs=25.5
Q ss_pred CCCCCC-CCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 275 QRLPLF-DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 275 e~LPF~-D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++|++ ...+|+|+..+-|-+-.....+.-.+..+..++.|||
T Consensus 176 dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg 219 (484)
T COG5459 176 DRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGG 219 (484)
T ss_pred hccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCC
Confidence 456665 4456666655544332222223336778888999999
No 293
>PRK13699 putative methylase; Provisional
Probab=41.59 E-value=67 Score=30.38 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=33.9
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL 263 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~ 263 (365)
++..++.... .+|. +|||-=||+|+.+....+.|...++.+++ ....+.+.+
T Consensus 152 l~~~~i~~~s-~~g~--~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~--~~y~~~~~~ 203 (227)
T PRK13699 152 SLQPLIESFT-HPNA--IVLDPFAGSGSTCVAALQSGRRYIGIELL--EQYHRAGQQ 203 (227)
T ss_pred HHHHHHHHhC-CCCC--EEEeCCCCCCHHHHHHHHcCCCEEEEecC--HHHHHHHHH
Confidence 4555554322 1254 57999999999988877778888876554 445444433
No 294
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=40.92 E-value=62 Score=31.95 Aligned_cols=95 Identities=16% Similarity=0.053 Sum_probs=44.1
Q ss_pred CCceEEEEcCcccH--HHHHHhhc---CCeEEEeccCCChhHHH---HHHH---cCCCcEEeccCCC----C--CCCCCc
Q 017839 221 VIRLGIDVGGATGS--FAARMKLY---NITILTTTMNLGAPYSE---AAAL---RGLVPLHVPLQQR----L--PLFDGV 283 (365)
Q Consensus 221 ~iRi~LDIGCGtG~--faa~Lae~---gv~Vv~~~ldl~~~~~e---~a~~---Rg~v~~~~g~ae~----L--PF~D~S 283 (365)
+||-.||||||-=+ ..-..+++ ..+|+-++.|. -... .... +|...++.+|..+ | |=-.+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP--vv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP--VVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH--HHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc--hHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 58888999999653 44445443 57777666552 1111 1111 1224566665422 1 111122
Q ss_pred cc-----eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 284 LD-----VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FD-----lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+| .|....+|++..|.++...++..+...|-||.
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS 184 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGS 184 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCc
Confidence 33 34555667666665778889999999999999
No 295
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=40.63 E-value=49 Score=31.39 Aligned_cols=100 Identities=9% Similarity=-0.017 Sum_probs=42.8
Q ss_pred hHHHHh-hhccccCCCCceEEEEcCcccHHHHHHhh----c--CCeEEEeccCCChhHHHHHHHc----CCCcEEeccCC
Q 017839 207 PVTQFL-DLAKAANSVIRLGIDVGGATGSFAARMKL----Y--NITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQ 275 (365)
Q Consensus 207 ~I~~vL-~~~p~~~g~iRi~LDIGCGtG~faa~Lae----~--gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae 275 (365)
.+.+++ +++| ++++++|.-.|.-+..+|+ . ...|+++++|+.. .++.+.+. ..+.+++|+..
T Consensus 23 ~~qeli~~~kP------d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~-~~~~a~e~hp~~~rI~~i~Gds~ 95 (206)
T PF04989_consen 23 AYQELIWELKP------DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP-HNRKAIESHPMSPRITFIQGDSI 95 (206)
T ss_dssp HHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---S-GGGG----TTEEEEES-SS
T ss_pred HHHHHHHHhCC------CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch-hchHHHhhccccCceEEEECCCC
Confidence 344554 3455 3469999877664444433 2 2688888887532 22223333 56788988643
Q ss_pred CCCC--------CCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 276 RLPL--------FDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 276 ~LPF--------~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..-. ....-.+|+ -.+=|.+.. .-..|.-...+++||+
T Consensus 96 d~~~~~~v~~~~~~~~~vlVi-lDs~H~~~h---vl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 96 DPEIVDQVRELASPPHPVLVI-LDSSHTHEH---VLAELEAYAPLVSPGS 141 (206)
T ss_dssp STHHHHTSGSS----SSEEEE-ESS----SS---HHHHHHHHHHT--TT-
T ss_pred CHHHHHHHHHhhccCCceEEE-ECCCccHHH---HHHHHHHhCccCCCCC
Confidence 3211 112333444 222211111 1235566889999999
No 296
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=40.57 E-value=26 Score=34.17 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=45.3
Q ss_pred cCCCCCCCCCCChHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCccccchhcccCCCCCC
Q 017839 108 MSYTPFTLCPHDTDLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQKSPNLGF 187 (365)
Q Consensus 108 m~y~~~~~Cp~d~~~~~~l~~r~C~plprrrCl~~~p~~~p~p~p~s~w~~~p~~~~~~W~~~~~~~~~~l~~~~~~~gf 187 (365)
-.|.+..+|-||..+|++|.+-||.- +-| | ..|=. +++|-
T Consensus 122 eGF~VlPY~~~D~v~akrL~d~Gcaa------vMP--------l------gsPIG--------------------Sg~Gi 161 (247)
T PF05690_consen 122 EGFVVLPYCTDDPVLAKRLEDAGCAA------VMP--------L------GSPIG--------------------SGRGI 161 (247)
T ss_dssp TT-EEEEEE-S-HHHHHHHHHTT-SE------BEE--------B------SSSTT--------------------T---S
T ss_pred CCCEEeecCCCCHHHHHHHHHCCCCE------EEe--------c------ccccc--------------------cCcCC
Confidence 57889999999999999999999942 221 2 22222 22332
Q ss_pred CccccccCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEE
Q 017839 188 DPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITIL 247 (365)
Q Consensus 188 ~~~~~e~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv 247 (365)
. +.+.|..+++.. .+.+|+|-|-|+.+-++...|.|...+
T Consensus 162 ~---------------n~~~l~~i~~~~-----~vPvIvDAGiG~pSdaa~AMElG~daV 201 (247)
T PF05690_consen 162 Q---------------NPYNLRIIIERA-----DVPVIVDAGIGTPSDAAQAMELGADAV 201 (247)
T ss_dssp S---------------THHHHHHHHHHG-----SSSBEEES---SHHHHHHHHHTT-SEE
T ss_pred C---------------CHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHcCCcee
Confidence 1 122344444322 256789999999999999999987654
No 297
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=39.10 E-value=22 Score=36.64 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=44.4
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhH-----HHHH----HHcCC----CcEEeccCCCCCCC-CCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPY-----SEAA----ALRGL----VPLHVPLQQRLPLF-DGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~-----~e~a----~~Rg~----v~~~~g~ae~LPF~-D~SFDlV~ 288 (365)
.+|.|==.|||++....++.|+.|+|+++|..--. .+-+ .+-|. +.++.+|...-|.- ...||.|+
T Consensus 210 divyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIv 289 (421)
T KOG2671|consen 210 DIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIV 289 (421)
T ss_pred CEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeEEE
Confidence 46899999999999888888999999988841000 0001 11121 34455666666654 45699998
Q ss_pred Ec
Q 017839 289 CG 290 (365)
Q Consensus 289 s~ 290 (365)
|-
T Consensus 290 cD 291 (421)
T KOG2671|consen 290 CD 291 (421)
T ss_pred eC
Confidence 83
No 298
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.85 E-value=1.5e+02 Score=26.56 Aligned_cols=83 Identities=22% Similarity=0.116 Sum_probs=45.2
Q ss_pred eEEEEcCcc-cHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC-----CCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGAT-GSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL-----PLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGt-G~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L-----PF~D~SFDlV~s~~~L~~w 296 (365)
.+|..|+|+ |..+..+++ .|..|+.++.+ ....+.+...|...++....... ....+.||+|+....-.
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-- 212 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAGARVIVTDRS--DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP-- 212 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcCC--HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH--
Confidence 358899885 766666665 47777654433 33444444444211111110000 12345799998543210
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+..+.+.|+++|
T Consensus 213 -------~~~~~~~~~l~~~G 226 (271)
T cd05188 213 -------ETLAQALRLLRPGG 226 (271)
T ss_pred -------HHHHHHHHhcccCC
Confidence 24567788999999
No 299
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=37.33 E-value=1.4e+02 Score=31.62 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCCceEEEEcCcccHH----HHHHhhcCCeEEEeccCCChhHH----HHHHHcCCCcEEe--ccCCCCC---CCCCccce
Q 017839 220 SVIRLGIDVGGATGSF----AARMKLYNITILTTTMNLGAPYS----EAAALRGLVPLHV--PLQQRLP---LFDGVLDV 286 (365)
Q Consensus 220 g~iRi~LDIGCGtG~f----aa~Lae~gv~Vv~~~ldl~~~~~----e~a~~Rg~v~~~~--g~ae~LP---F~D~SFDl 286 (365)
|. || ||+++-.|.= |+.|...|+ |++ .|...... +.+..-|.-..++ .++..+| |+. +||=
T Consensus 242 gE-RI-lDmcAAPGGKTt~IAalMkn~G~-I~A--nD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 242 GE-RI-LDMCAAPGGKTTHIAALMKNTGV-IFA--NDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CC-ee-cchhcCCCchHHHHHHHHcCCce-EEe--cccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 53 66 9999998853 444444453 333 44322222 3334446544333 3555555 555 8998
Q ss_pred eE----Ecc--hhh-----cccC-h-------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh
Q 017839 287 VR----CGH--AVN-----RWIP-V-------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL 333 (365)
Q Consensus 287 V~----s~~--~L~-----~w~d-~-------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~ 333 (365)
|. |+. ++. -|.. . ...++.|...-..+|||| ..++.+.+....+++.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 87 555 221 0110 0 012346667778899999 3344444444455554
No 300
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=36.39 E-value=1.6e+02 Score=28.02 Aligned_cols=82 Identities=17% Similarity=0.062 Sum_probs=43.2
Q ss_pred EEEEcCc-ccHHHHHHhh-cCCe-EEEeccCCChhHHHHHHHcCCCcEEeccCCCC----CCCCCccceeEEcchhhccc
Q 017839 225 GIDVGGA-TGSFAARMKL-YNIT-ILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL----PLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 225 ~LDIGCG-tG~faa~Lae-~gv~-Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L----PF~D~SFDlV~s~~~L~~w~ 297 (365)
+|-+|+| .|..+..+++ .|+. ++.++- +....+.+.+.|.-.++....... ....+.+|+|+....-
T Consensus 163 vlI~g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~---- 236 (334)
T cd08234 163 VLVFGAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGV---- 236 (334)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCC----
Confidence 4777865 3556666655 4765 443322 234445555555422221111110 1134568999854211
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
...+.++.|.|+++|
T Consensus 237 -----~~~~~~~~~~l~~~G 251 (334)
T cd08234 237 -----PKTLEQAIEYARRGG 251 (334)
T ss_pred -----hHHHHHHHHHHhcCC
Confidence 136678899999999
No 301
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=35.96 E-value=1.8e+02 Score=27.63 Aligned_cols=82 Identities=17% Similarity=0.010 Sum_probs=44.4
Q ss_pred EEEEcCc-ccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC-CCCCccceeEEcchhhcccChhh
Q 017839 225 GIDVGGA-TGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP-LFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 225 ~LDIGCG-tG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP-F~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
+|-+|+| .|..+..+++. |+.|+.++- +....+.+.+.|.-.++........ -..+.+|+|+.... .
T Consensus 166 vlI~g~g~iG~~~~~~a~~~G~~v~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~-----~--- 235 (330)
T cd08245 166 VAVLGIGGLGHLAVQYARAMGFETVAITR--SPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV-----S--- 235 (330)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-----c---
Confidence 3667886 67777777664 777765432 3344555555553222211110000 01246888875321 1
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
...+.++.|.|+++|
T Consensus 236 -~~~~~~~~~~l~~~G 250 (330)
T cd08245 236 -GAAAEAALGGLRRGG 250 (330)
T ss_pred -HHHHHHHHHhcccCC
Confidence 135678899999999
No 302
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=35.80 E-value=1.6e+02 Score=27.76 Aligned_cols=80 Identities=13% Similarity=0.002 Sum_probs=44.3
Q ss_pred EEEc--CcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC-----CCCCCccceeEEcchhhccc
Q 017839 226 IDVG--GATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL-----PLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 226 LDIG--CGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L-----PF~D~SFDlV~s~~~L~~w~ 297 (365)
|=.| .|.|.++..+++. |+.|+.++- +....+++.+.|.-.++....+.+ ....+.+|+|+-.-.
T Consensus 148 lI~ga~g~vG~~aiqlA~~~G~~vi~~~~--s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g----- 220 (329)
T cd08294 148 VVNGAAGAVGSLVGQIAKIKGCKVIGCAG--SDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG----- 220 (329)
T ss_pred EEecCccHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCC-----
Confidence 4444 5778888888774 887765432 233445555555422222111110 112245888874321
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
. ..+.+..+.|+++|
T Consensus 221 ~-----~~~~~~~~~l~~~G 235 (329)
T cd08294 221 G-----EFSSTVLSHMNDFG 235 (329)
T ss_pred H-----HHHHHHHHhhccCC
Confidence 0 25678899999999
No 303
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=33.56 E-value=1.8e+02 Score=27.78 Aligned_cols=82 Identities=16% Similarity=0.022 Sum_probs=45.3
Q ss_pred EEEEcCcc-cHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEeccC----CCC--CCCCCccceeEEcchhhcc
Q 017839 225 GIDVGGAT-GSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVPLQ----QRL--PLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCGt-G~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~a----e~L--PF~D~SFDlV~s~~~L~~w 296 (365)
+|-.|+|. |..+..+++. |+.|+.+.- +....+++...|.-.++.... +.+ -..+..+|+|+....
T Consensus 163 vLI~g~g~vG~~a~~lA~~~g~~v~~~~~--s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g---- 236 (337)
T cd08261 163 VLVVGAGPIGLGVIQVAKARGARVIVVDI--DDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG---- 236 (337)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEECC--CHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC----
Confidence 36678763 7777777764 877765432 234444554445322221111 111 013456888875421
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
. ...+.++.+.|+++|
T Consensus 237 ~-----~~~~~~~~~~l~~~G 252 (337)
T cd08261 237 N-----PASMEEAVELVAHGG 252 (337)
T ss_pred C-----HHHHHHHHHHHhcCC
Confidence 1 135678899999999
No 304
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=33.47 E-value=1.6e+02 Score=28.73 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=44.7
Q ss_pred EEEEcCc-ccHHHHHHhhc-CCeEEEeccC-CChhHHHHHHHcCCCcEEeccCCCC--CCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGA-TGSFAARMKLY-NITILTTTMN-LGAPYSEAAALRGLVPLHVPLQQRL--PLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCG-tG~faa~Lae~-gv~Vv~~~ld-l~~~~~e~a~~Rg~v~~~~g~ae~L--PF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+|=+|+| .|.++..+++. |+.|+.++-+ .+....+++.+.|.. .+....+.+ --..+.||+|+-.-.-
T Consensus 176 vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-~v~~~~~~~~~~~~~~~~d~vid~~g~------ 248 (355)
T cd08230 176 ALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-YVNSSKTPVAEVKLVGEFDLIIEATGV------ 248 (355)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-EecCCccchhhhhhcCCCCEEEECcCC------
Confidence 4666775 37777777764 7777654431 123444555555542 221111110 0012457887743321
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
...+.+..++||+||
T Consensus 249 ---~~~~~~~~~~l~~~G 263 (355)
T cd08230 249 ---PPLAFEALPALAPNG 263 (355)
T ss_pred ---HHHHHHHHHHccCCc
Confidence 135678899999999
No 305
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.07 E-value=3.4e+02 Score=28.86 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=69.9
Q ss_pred HHHHHHhhcCCeEEEeccC-C-ChhHHHH--HHHcCCCcEEeccCCCCC----------CCCCccceeEEcchhhcccCh
Q 017839 234 SFAARMKLYNITILTTTMN-L-GAPYSEA--AALRGLVPLHVPLQQRLP----------LFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 234 ~faa~Lae~gv~Vv~~~ld-l-~~~~~e~--a~~Rg~v~~~~g~ae~LP----------F~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+|.++.++|..+.-+.-| + .+.+.|. -+.+..+||+.+-.+.=| |..+-||+|++-..-+|-.+.
T Consensus 120 KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~ 199 (483)
T KOG0780|consen 120 KLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEA 199 (483)
T ss_pred HHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhH
Confidence 4677777778544322223 1 2233332 234455788886444333 788999999988777675554
Q ss_pred hhHHHHHHHHHhhhCCCC--------CcchhhhhHHHHHHhhCCceeeEEeecCCCC-CCCceEEEEee
Q 017839 300 IMMEFLFYDVDRVLRGGG--------KASDLENVYGPLIGKLGYKKVKWATANKPNS-KNGEVYLTALL 359 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG--------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~-~~~~~y~sall 359 (365)
... .-+.++.+.++|.= .+....+.-...=+..+ +.=++..|+|. .+++.-||||-
T Consensus 200 sLf-eEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd---vg~vIlTKlDGhakGGgAlSaVa 264 (483)
T KOG0780|consen 200 SLF-EEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD---VGAVILTKLDGHAKGGGALSAVA 264 (483)
T ss_pred HHH-HHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc---cceEEEEecccCCCCCceeeehh
Confidence 332 34677788888887 22222221111223333 34456789985 56777788763
No 306
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=32.13 E-value=16 Score=31.03 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=8.7
Q ss_pred EEEcCcccHH
Q 017839 226 IDVGGATGSF 235 (365)
Q Consensus 226 LDIGCGtG~f 235 (365)
+|||||.|..
T Consensus 7 IDIGcG~GNT 16 (124)
T PF07101_consen 7 IDIGCGAGNT 16 (124)
T ss_pred cccccCCCcc
Confidence 7999999964
No 307
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=30.93 E-value=1.7e+02 Score=28.19 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=39.7
Q ss_pred EEEEcC-cccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 225 GIDVGG-ATGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 225 ~LDIGC-GtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
+|=+|| |.|.++..+++ .|+.++.. .+......+.+.+...+. . .+. ..+.||+|+-.-.-
T Consensus 148 vlV~G~G~vG~~a~q~ak~~G~~~v~~-~~~~~~rl~~a~~~~~i~---~-~~~---~~~g~Dvvid~~G~--------- 210 (308)
T TIGR01202 148 DLIVGHGTLGRLLARLTKAAGGSPPAV-WETNPRRRDGATGYEVLD---P-EKD---PRRDYRAIYDASGD--------- 210 (308)
T ss_pred EEEECCCHHHHHHHHHHHHcCCceEEE-eCCCHHHHHhhhhccccC---h-hhc---cCCCCCEEEECCCC---------
Confidence 355576 45778887776 47764322 233333333332221111 0 111 23468888743321
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
...+.+..+.|+|||
T Consensus 211 ~~~~~~~~~~l~~~G 225 (308)
T TIGR01202 211 PSLIDTLVRRLAKGG 225 (308)
T ss_pred HHHHHHHHHhhhcCc
Confidence 135677889999999
No 308
>PHA02119 hypothetical protein
Probab=30.33 E-value=1.1e+02 Score=24.70 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhCCCC--C---------------cch----hhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeec
Q 017839 303 EFLFYDVDRVLRGGG--K---------------ASD----LENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG--~---------------~~~----l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~K 361 (365)
.++-.|+.|-|.|=| . ... ..+....+++.+||.. |.|+-++|-|++ |-.|
T Consensus 15 ~fateelkrklapvgkfvademi~~r~f~isf~~~kfp~i~~~divdylr~lgy~~-------~~~s~rnes~i~-vtak 86 (87)
T PHA02119 15 QFATEELKRKLAPVGKFVADEMIRQRSFKISFDVAKFPAIMPKDIVDYLRSLGYDA-------KSDSFRNESVIT-VTAK 86 (87)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHhheeEEEeccccCCccccHHHHHHHHHccchh-------ccccccCceEEE-EecC
Confidence 467889999999999 1 111 1234567899999974 445667787873 4445
Q ss_pred C
Q 017839 362 P 362 (365)
Q Consensus 362 P 362 (365)
|
T Consensus 87 p 87 (87)
T PHA02119 87 P 87 (87)
T ss_pred C
Confidence 5
No 309
>PHA01634 hypothetical protein
Probab=28.08 E-value=70 Score=28.85 Aligned_cols=29 Identities=24% Similarity=0.104 Sum_probs=22.9
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEecc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTM 251 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~l 251 (365)
++|+|||.+.|.-+.+++-+|+ .|++...
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~ 59 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQYEK 59 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEEecc
Confidence 4679999999999999998885 4555433
No 310
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=28.04 E-value=2.5e+02 Score=26.81 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=42.2
Q ss_pred ceEEEEcCc-ccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHcCCCcEEeccCC-------CCCCCCCccceeEEcch
Q 017839 223 RLGIDVGGA-TGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALRGLVPLHVPLQQ-------RLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCG-tG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae-------~LPF~D~SFDlV~s~~~ 292 (365)
++ |-.|+| .|..+..+++. |. .++.++- .....+.+.+.|...++..... ++ ..++.||+|+-...
T Consensus 170 ~V-lI~g~g~vg~~~iqlak~~g~~~v~~~~~--~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld~~g 245 (347)
T cd05278 170 TV-AVIGAGPVGLCAVAGARLLGAARIIAVDS--NPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIEAVG 245 (347)
T ss_pred EE-EEECCCHHHHHHHHHHHHcCCCEEEEEeC--CHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEEccC
Confidence 44 556765 46666666654 74 5554422 2333344444442222211111 11 13357898874321
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
- ...+.++.+.|+++|
T Consensus 246 ~---------~~~~~~~~~~l~~~G 261 (347)
T cd05278 246 F---------EETFEQAVKVVRPGG 261 (347)
T ss_pred C---------HHHHHHHHHHhhcCC
Confidence 1 136778899999999
No 311
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=27.94 E-value=1.6e+02 Score=29.48 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=48.5
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-----CCCcEEeccCCC---
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-----GLVPLHVPLQQR--- 276 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-----g~v~~~~g~ae~--- 276 (365)
+++++++.....+|. +++|.=+|.|.-+..+++. +..+++.+.| ..+.+.+.++ +.+.++.++-.+
T Consensus 8 ll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigiD~D--~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGIDRD--PQAIAFAKERLSDFEGRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence 566777643322243 5799999999999988875 3677765444 4555444332 234455553222
Q ss_pred -CC-CCCCccceeEEcchh
Q 017839 277 -LP-LFDGVLDVVRCGHAV 293 (365)
Q Consensus 277 -LP-F~D~SFDlV~s~~~L 293 (365)
+. ...++||.|..-..+
T Consensus 84 ~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 84 HLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHhcCCCcccEEEEeccC
Confidence 21 134568888765544
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=27.30 E-value=2.9e+02 Score=26.84 Aligned_cols=78 Identities=18% Similarity=-0.010 Sum_probs=42.9
Q ss_pred EEEEcCc-ccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 225 GIDVGGA-TGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 225 ~LDIGCG-tG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
+|=.|+| .|.++..+++ .|+.|+.++.+ ....+++.+.|.-.++.. ... ..+.||+++-....
T Consensus 169 VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~--~~~~~~a~~~Ga~~vi~~--~~~--~~~~~d~~i~~~~~--------- 233 (329)
T TIGR02822 169 LGLYGFGGSAHLTAQVALAQGATVHVMTRG--AAARRLALALGAASAGGA--YDT--PPEPLDAAILFAPA--------- 233 (329)
T ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeCC--hHHHHHHHHhCCceeccc--ccc--CcccceEEEECCCc---------
Confidence 4666753 5666666765 47777654433 334566666564211111 111 12357866532221
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
...+.+..+.||+||
T Consensus 234 ~~~~~~~~~~l~~~G 248 (329)
T TIGR02822 234 GGLVPPALEALDRGG 248 (329)
T ss_pred HHHHHHHHHhhCCCc
Confidence 136778899999999
No 313
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=27.08 E-value=5.9e+02 Score=24.71 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=40.8
Q ss_pred CceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHH---HHHHHcCCC---cEEeccCCCCCCC-CCccceeEEcch
Q 017839 222 IRLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYS---EAAALRGLV---PLHVPLQQRLPLF-DGVLDVVRCGHA 292 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~---e~a~~Rg~v---~~~~g~ae~LPF~-D~SFDlV~s~~~ 292 (365)
.+ +.||||-.|.+..+|.+.+ -+++..+++. .+.. +...+.++. ....+++ -.++. +..+|.|+...+
T Consensus 18 ~~-iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~-gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 18 AR-IADIGSDHAYLPIYLVKNNPASTAVAGEVVP-GPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGM 94 (226)
T ss_pred Cc-eeeccCchhHhHHHHHhcCCcceEEEeeccc-CHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCC
Confidence 34 5999999999999999876 2444444442 2322 223334443 3444554 22454 448999986553
No 314
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=27.07 E-value=44 Score=33.26 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=22.8
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.||+|-++..+..-.... ..+..+..+.+++.|
T Consensus 196 ~ydlIlsSetiy~~~~~~--~~~~~~r~~l~~~D~ 228 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLA--VLYLLHRPCLLKTDG 228 (282)
T ss_pred chhhhhhhhhhhCcchhh--hhHhhhhhhcCCccc
Confidence 789999888886543322 122667788888888
No 315
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=42 Score=30.98 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=29.5
Q ss_pred hHHHHhhhccccC-CCCceEEEEcCcccHHHHHHhhcC-CeEEEeccC
Q 017839 207 PVTQFLDLAKAAN-SVIRLGIDVGGATGSFAARMKLYN-ITILTTTMN 252 (365)
Q Consensus 207 ~I~~vL~~~p~~~-g~iRi~LDIGCGtG~faa~Lae~g-v~Vv~~~ld 252 (365)
.++.+|.+.+..+ |. .+|+|.|.|..-...++.| ...+++.+|
T Consensus 60 Qv~nVLSll~~n~~Gk---lvDlGSGDGRiVlaaar~g~~~a~GvELN 104 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGK---LVDLGSGDGRIVLAAARCGLRPAVGVELN 104 (199)
T ss_pred HHHHHHHHccCCCCCc---EEeccCCCceeehhhhhhCCCcCCceecc
Confidence 6778888765322 43 3999999999877777766 344555555
No 316
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=25.28 E-value=1.1e+02 Score=32.12 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=22.9
Q ss_pred CCceEEEEcCcccHHHHHHhh-cCCeEEEe
Q 017839 221 VIRLGIDVGGATGSFAARMKL-YNITILTT 249 (365)
Q Consensus 221 ~iRi~LDIGCGtG~faa~Lae-~gv~Vv~~ 249 (365)
++..+.|+|.|-|.++..|.= .|..|.++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aI 182 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAI 182 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEe
Confidence 367789999999999988864 46777764
No 317
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=23.58 E-value=3.7e+02 Score=26.24 Aligned_cols=82 Identities=13% Similarity=-0.104 Sum_probs=43.1
Q ss_pred EEEEcCc-ccHHHHHHhhc-CCe-EEEeccCCChhHHHHHHHcCCCcEEeccCCCC------CCCCCccceeEEcchhhc
Q 017839 225 GIDVGGA-TGSFAARMKLY-NIT-ILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL------PLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCG-tG~faa~Lae~-gv~-Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L------PF~D~SFDlV~s~~~L~~ 295 (365)
+|=.|+| .|..+..+++. |+. |+.++. +....+++.+.|.-.++....+.. -.....+|+|+-.-.-
T Consensus 180 VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~-- 255 (358)
T TIGR03451 180 VAVIGCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR-- 255 (358)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC--
Confidence 3556764 36666666664 764 665433 344556665555422221111110 0122358888742211
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
...+.+..+.||+||
T Consensus 256 -------~~~~~~~~~~~~~~G 270 (358)
T TIGR03451 256 -------PETYKQAFYARDLAG 270 (358)
T ss_pred -------HHHHHHHHHHhccCC
Confidence 135667888999999
No 318
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=23.10 E-value=1.8e+02 Score=23.43 Aligned_cols=99 Identities=13% Similarity=-0.034 Sum_probs=50.7
Q ss_pred CcccHHHHHHhh----cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC----CCCCccceeEEcchhhcccChhh
Q 017839 230 GATGSFAARMKL----YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP----LFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 230 CGtG~faa~Lae----~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP----F~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
||.|.++..+++ .+..++..+.| ....+.+.++| +.++.|+..+.- ..-+..|.|++..- ++ .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d--~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d-~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRD--PERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD-----DD-E 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESS--HHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS-----SH-H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECC--cHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC-----CH-H
Confidence 566777766655 35466654443 44556666677 577778654321 12246776666432 22 2
Q ss_pred HHHHHHHHHhhhCCCC--CcchhhhhHHHHHHhhCCce
Q 017839 302 MEFLFYDVDRVLRGGG--KASDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG--~~~~l~~~~~~~l~~~gfk~ 337 (365)
....+....|-+-|.. .-.-.++.+...++++|-..
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVNDPENAELLRQAGADH 112 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCE
Confidence 2244555566666666 11111123556778887654
No 319
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.99 E-value=4.1e+02 Score=25.52 Aligned_cols=83 Identities=19% Similarity=0.098 Sum_probs=42.5
Q ss_pred ceEEEEcCcc-cHHHHHHhhc-CCe-EEEeccCCChhHHHHHHHcCCCcEEeccCCC-------C--CCCCCccceeEEc
Q 017839 223 RLGIDVGGAT-GSFAARMKLY-NIT-ILTTTMNLGAPYSEAAALRGLVPLHVPLQQR-------L--PLFDGVLDVVRCG 290 (365)
Q Consensus 223 Ri~LDIGCGt-G~faa~Lae~-gv~-Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~-------L--PF~D~SFDlV~s~ 290 (365)
++ |=.|+|. |..+..+++. |+. |+.++- +....+++.+.|.-.++...... + ...+..||+|+-.
T Consensus 165 ~v-lI~g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 241 (343)
T cd05285 165 TV-LVFGAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIEC 241 (343)
T ss_pred EE-EEECCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEEC
Confidence 44 3356654 6677777764 766 544322 23334444444432222111111 0 1234558988853
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..- +..+.+..+.|+++|
T Consensus 242 ~g~---------~~~~~~~~~~l~~~G 259 (343)
T cd05285 242 TGA---------ESCIQTAIYATRPGG 259 (343)
T ss_pred CCC---------HHHHHHHHHHhhcCC
Confidence 221 125678899999999
No 320
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=22.82 E-value=2.8e+02 Score=27.01 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=40.3
Q ss_pred eEEEEcCcc-cHHHHHHhhc--C-CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGAT-GSFAARMKLY--N-ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGt-G~faa~Lae~--g-v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+|=+|||. |.++..++++ | ..|+.++.+ ....+++.+-+.. ... +.+. .+..||+|+-.-.- +
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~--~~k~~~a~~~~~~-~~~---~~~~-~~~g~d~viD~~G~----~- 233 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFGKH--QEKLDLFSFADET-YLI---DDIP-EDLAVDHAFECVGG----R- 233 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc--HhHHHHHhhcCce-eeh---hhhh-hccCCcEEEECCCC----C-
Confidence 457788753 6666666553 3 456554433 3334444332221 111 1111 11137887732210 0
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
....++.+..+.||+||
T Consensus 234 -~~~~~~~~~~~~l~~~G 250 (341)
T cd08237 234 -GSQSAINQIIDYIRPQG 250 (341)
T ss_pred -ccHHHHHHHHHhCcCCc
Confidence 01246788999999999
No 321
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=22.55 E-value=4.1e+02 Score=26.14 Aligned_cols=83 Identities=18% Similarity=0.088 Sum_probs=49.2
Q ss_pred EEEcCc--ccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC-CCCCCccceeEEcchhhcccChhhH
Q 017839 226 IDVGGA--TGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL-PLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 226 LDIGCG--tG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L-PF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
+=+|.| .|+++..+.+.|..+...+.|......+.+.+.|.+.-.. .+. --.....|+|+-+--+ ...
T Consensus 7 ~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~---~~~~~~~~~~aD~VivavPi------~~~ 77 (279)
T COG0287 7 GIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELT---VAGLAEAAAEADLVIVAVPI------EAT 77 (279)
T ss_pred EEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccc---cchhhhhcccCCEEEEeccH------HHH
Confidence 445655 4678888888885553334555444444454455432111 111 1134568999865433 234
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
...++|+..-||||-
T Consensus 78 ~~~l~~l~~~l~~g~ 92 (279)
T COG0287 78 EEVLKELAPHLKKGA 92 (279)
T ss_pred HHHHHHhcccCCCCC
Confidence 578999999999997
No 322
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=21.96 E-value=1.1e+02 Score=28.54 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=23.5
Q ss_pred EcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCC
Q 017839 228 VGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGL 266 (365)
Q Consensus 228 IGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~ 266 (365)
.|||+=+.+..|+++ |...+..+ .-+.++|+++|.
T Consensus 9 pGsG~TTva~~lAe~~gl~~vsaG----~iFR~~A~e~gm 44 (179)
T COG1102 9 PGSGKTTVARELAEHLGLKLVSAG----TIFREMARERGM 44 (179)
T ss_pred CCCChhHHHHHHHHHhCCceeecc----HHHHHHHHHcCC
Confidence 389999999999986 76665422 235555555553
No 323
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=21.68 E-value=69 Score=30.34 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=15.3
Q ss_pred CceEEEEcCcccHHHHHHhh
Q 017839 222 IRLGIDVGGATGSFAARMKL 241 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae 241 (365)
+++ +++|.|+|+++..+.+
T Consensus 20 ~~i-vE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 20 LRI-VEIGAGRGTLARDILR 38 (252)
T ss_dssp EEE-EEES-TTSHHHHHHHH
T ss_pred cEE-EEECCCchHHHHHHHH
Confidence 555 9999999999988865
No 324
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=21.54 E-value=2.4e+02 Score=26.85 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=44.0
Q ss_pred HHHHHhhcC--CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhh
Q 017839 235 FAARMKLYN--ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRV 312 (365)
Q Consensus 235 faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RV 312 (365)
||..|.+.| +.|++.+ .+....+.+.+.|.+.-...+.+.+ ..+|+|+-.--+ ......+.|+...
T Consensus 1 ~A~aL~~~g~~~~v~g~d--~~~~~~~~a~~~g~~~~~~~~~~~~----~~~DlvvlavP~------~~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYD--RDPETLEAALELGIIDEASTDIEAV----EDADLVVLAVPV------SAIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEEE---SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-H------HHHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEEEe--CCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcCCH------HHHHHHHHHhhhh
Confidence 577888887 7787654 4455566666778765443322222 235998865433 2355789999999
Q ss_pred hCCCC
Q 017839 313 LRGGG 317 (365)
Q Consensus 313 LRPGG 317 (365)
+++|+
T Consensus 69 ~~~~~ 73 (258)
T PF02153_consen 69 LKPGA 73 (258)
T ss_dssp S-TTS
T ss_pred cCCCc
Confidence 99999
No 325
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=21.21 E-value=5e+02 Score=25.97 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=50.0
Q ss_pred EEEEcCcccHHHHHHhhc-CC--eEEEeccC-C-ChhHHHHHHHc-CCCcEEeccCCCCCC----CCCccceeEEcchhh
Q 017839 225 GIDVGGATGSFAARMKLY-NI--TILTTTMN-L-GAPYSEAAALR-GLVPLHVPLQQRLPL----FDGVLDVVRCGHAVN 294 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~-gv--~Vv~~~ld-l-~~~~~e~a~~R-g~v~~~~g~ae~LPF----~D~SFDlV~s~~~L~ 294 (365)
+|=+|.+.|+.-.+...- |- .|.++..+ . ......++..| +++|++... +.|. --.-.|+|++--
T Consensus 160 VLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDA--rhP~KYRmlVgmVDvIFaDv--- 234 (317)
T KOG1596|consen 160 VLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDA--RHPAKYRMLVGMVDVIFADV--- 234 (317)
T ss_pred EEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccC--CCchheeeeeeeEEEEeccC---
Confidence 599999999987777653 21 22332332 1 22333455555 456766532 2332 223677777632
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+++....+.....--||+||
T Consensus 235 --aqpdq~RivaLNA~~FLk~gG 255 (317)
T KOG1596|consen 235 --AQPDQARIVALNAQYFLKNGG 255 (317)
T ss_pred --CCchhhhhhhhhhhhhhccCC
Confidence 223344567778889999999
No 326
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=21.06 E-value=1.4e+02 Score=31.72 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=38.8
Q ss_pred CcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEec-cCCCCCCCCCccceeEEcchh
Q 017839 230 GATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVP-LQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 230 CGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g-~ae~LPF~D~SFDlV~s~~~L 293 (365)
.|-+.+|..|.++|..|.|+++.... +.+...+.|. .++.+ +++++.=+ |.|+.+.++
T Consensus 18 ~GMsglA~iL~~~G~~VsGSD~~~~~-~t~~L~~~G~-~i~~gh~~~ni~~~----~~VV~s~Ai 76 (459)
T COG0773 18 IGMSGLAEILLNLGYKVSGSDLAESP-MTQRLEALGI-EIFIGHDAENILDA----DVVVVSNAI 76 (459)
T ss_pred ccHHHHHHHHHhCCCceECccccccH-HHHHHHHCCC-eEeCCCCHHHcCCC----ceEEEeccc
Confidence 35567888899999999998877544 7777777775 45555 55555422 226666665
No 327
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=20.98 E-value=4.7e+02 Score=25.13 Aligned_cols=81 Identities=16% Similarity=0.061 Sum_probs=40.1
Q ss_pred EEEcCcc-cHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC-----CCCCccceeEEcchhhccc
Q 017839 226 IDVGGAT-GSFAARMKLY-NI-TILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP-----LFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 226 LDIGCGt-G~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP-----F~D~SFDlV~s~~~L~~w~ 297 (365)
|-.|+|. |..+..+++. |. .++.+ +-+....+.+.+-|.-.++....+.++ ...+.+|+|+....
T Consensus 168 lV~g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g----- 240 (341)
T cd05281 168 LITGCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG----- 240 (341)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC-----
Confidence 3366643 6676667654 76 45543 222333334444443222111111110 12346888875321
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
. ...+.++.+.|+++|
T Consensus 241 ~----~~~~~~~~~~l~~~G 256 (341)
T cd05281 241 N----PKAIEQGLKALTPGG 256 (341)
T ss_pred C----HHHHHHHHHHhccCC
Confidence 0 125678899999999
No 328
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=20.21 E-value=1.7e+02 Score=29.43 Aligned_cols=65 Identities=15% Similarity=0.319 Sum_probs=47.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC-CCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL-PLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L-PF~D~SFDlV~s~~~ 292 (365)
.+.|+|.-.|.++-.|.+++..|.+ +| +++|.+-....|.|.-...|+-+. | .....|..+|-.+
T Consensus 214 ~avDLGAcPGGWTyqLVkr~m~V~a--VD-ng~ma~sL~dtg~v~h~r~DGfk~~P-~r~~idWmVCDmV 279 (358)
T COG2933 214 WAVDLGACPGGWTYQLVKRNMRVYA--VD-NGPMAQSLMDTGQVTHLREDGFKFRP-TRSNIDWMVCDMV 279 (358)
T ss_pred eeeecccCCCccchhhhhcceEEEE--ec-cchhhhhhhcccceeeeeccCccccc-CCCCCceEEeehh
Confidence 4699999999999999999987765 44 456665555567776666666444 4 4677899998654
No 329
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=5.1e+02 Score=26.99 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.7
Q ss_pred eEEEEcCcccHHHHHHhhc
Q 017839 224 LGIDVGGATGSFAARMKLY 242 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~ 242 (365)
.|||++.-.|+=++.|.+.
T Consensus 158 ~VLDmCAAPG~Kt~qLLea 176 (375)
T KOG2198|consen 158 KVLDMCAAPGGKTAQLLEA 176 (375)
T ss_pred eeeeeccCCCccHHHHHHH
Confidence 4699999999988777764
No 330
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=20.00 E-value=3.1e+02 Score=27.04 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=40.0
Q ss_pred EEEcCc-ccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEec-cCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 226 IDVGGA-TGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVP-LQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 226 LDIGCG-tG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g-~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
|=.|+| .|.++..+++. |+.++.++.+. ....+.+.+.|.-.++.. ..+.+.-..+.+|+|+-.-. .
T Consensus 188 lV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-----~---- 257 (360)
T PLN02586 188 GVAGLGGLGHVAVKIGKAFGLKVTVISSSS-NKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-----A---- 257 (360)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEeCCc-chhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----C----
Confidence 447874 46677777664 77766543321 112233334453222211 10011000124787774321 1
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
...+.+..+.||+||
T Consensus 258 ~~~~~~~~~~l~~~G 272 (360)
T PLN02586 258 VHALGPLLGLLKVNG 272 (360)
T ss_pred HHHHHHHHHHhcCCc
Confidence 125678889999999
Done!