Your job contains 1 sequence.
>017840
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTY
TPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMG
HIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI
VCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTDAILPSAQKKNALNR
LVKVP
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017840
(365 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076426 - symbol:AT3G58560 "AT3G58560" species... 1240 8.2e-138 2
TAIR|locus:2076446 - symbol:AT3G58580 "AT3G58580" species... 1215 1.2e-134 2
SGD|S000000019 - symbol:CCR4 "Component of the CCR4-NOT t... 244 1.2e-18 1
WB|WBGene00000376 - symbol:ccr-4 species:6239 "Caenorhabd... 240 3.7e-18 1
POMBASE|SPCC31H12.08c - symbol:ccr4 "CCR4-Not complex sub... 240 3.9e-18 1
FB|FBgn0011725 - symbol:twin "twin" species:7227 "Drosoph... 234 1.8e-17 1
ZFIN|ZDB-GENE-071004-97 - symbol:zgc:171797 "zgc:171797" ... 232 3.4e-17 1
UNIPROTKB|E1C678 - symbol:CNOT6 "Uncharacterized protein"... 227 1.5e-16 1
UNIPROTKB|Q9ULM6 - symbol:CNOT6 "CCR4-NOT transcription c... 227 1.5e-16 1
UNIPROTKB|Q5BJ41 - symbol:cnot6 "CCR4-NOT transcription c... 226 2.0e-16 1
UNIPROTKB|A6QR51 - symbol:CNOT6 "CNOT6 protein" species:9... 226 2.0e-16 1
UNIPROTKB|E2QS92 - symbol:CNOT6 "Uncharacterized protein"... 226 2.0e-16 1
MGI|MGI:2144529 - symbol:Cnot6 "CCR4-NOT transcription co... 226 2.0e-16 1
RGD|1310783 - symbol:Cnot6 "CCR4-NOT transcription comple... 226 2.0e-16 1
UNIPROTKB|F1S5Q4 - symbol:CNOT6 "Uncharacterized protein"... 224 3.7e-16 1
UNIPROTKB|E1BE73 - symbol:LOC100849029 "Uncharacterized p... 217 1.3e-15 1
RGD|1309128 - symbol:Cnot6l "CCR4-NOT transcription compl... 219 1.5e-15 1
MGI|MGI:2443154 - symbol:Cnot6l "CCR4-NOT transcription c... 219 1.5e-15 1
UNIPROTKB|E1C5L3 - symbol:CNOT6L "Uncharacterized protein... 217 2.5e-15 1
UNIPROTKB|Q96LI5 - symbol:CNOT6L "CCR4-NOT transcription ... 217 2.6e-15 1
ZFIN|ZDB-GENE-060519-25 - symbol:pde12 "phosphodiesterase... 216 3.9e-15 1
CGD|CAL0002486 - symbol:CCR4 species:5476 "Candida albica... 215 8.5e-15 1
UNIPROTKB|Q5A761 - symbol:CCR4 "Glucose-repressible alcoh... 215 8.5e-15 1
ZFIN|ZDB-GENE-050522-302 - symbol:cnot6l "CCR4-NOT transc... 208 3.2e-14 1
UNIPROTKB|F1NGS9 - symbol:PDE12 "Uncharacterized protein"... 191 3.5e-13 2
UNIPROTKB|Q6L8Q7 - symbol:PDE12 "2',5'-phosphodiesterase ... 194 1.6e-12 1
UNIPROTKB|E2R412 - symbol:PDE12 "Uncharacterized protein"... 192 2.8e-12 1
UNIPROTKB|F1SGK9 - symbol:PDE12 "Uncharacterized protein"... 187 1.0e-11 1
MGI|MGI:1196310 - symbol:Angel2 "angel homolog 2 (Drosoph... 179 6.9e-11 1
ZFIN|ZDB-GENE-030131-6498 - symbol:angel2 "angel homolog ... 179 7.4e-11 1
UNIPROTKB|Q08DF7 - symbol:PDE12 "2',5'-phosphodiesterase ... 179 8.4e-11 1
RGD|1310975 - symbol:Pde12 "phosphodiesterase 12" species... 178 1.1e-10 1
MGI|MGI:2443226 - symbol:Pde12 "phosphodiesterase 12" spe... 177 1.4e-10 1
UNIPROTKB|F1RYS2 - symbol:CNOT6L "Uncharacterized protein... 173 3.4e-10 1
ASPGD|ASPL0000009331 - symbol:ccr4 species:162425 "Emeric... 173 4.7e-10 1
MGI|MGI:1915987 - symbol:Angel1 "angel homolog 1 (Drosoph... 170 1.0e-09 1
UNIPROTKB|A2VE74 - symbol:CCRN4L "Uncharacterized protein... 146 5.3e-08 2
ZFIN|ZDB-GENE-050208-306 - symbol:ccrn4la "CCR4 carbon ca... 146 2.5e-07 1
MGI|MGI:109382 - symbol:Ccrn4l "CCR4 carbon catabolite re... 144 4.1e-07 1
UNIPROTKB|F1PFN1 - symbol:CCRN4L "Uncharacterized protein... 142 5.0e-07 1
UNIPROTKB|F1NVT2 - symbol:CCRN4L "Uncharacterized protein... 142 5.2e-07 1
UNIPROTKB|I3LN01 - symbol:CCRN4L "Uncharacterized protein... 143 5.3e-07 1
RGD|1587344 - symbol:Ccrn4l "CCR4 carbon catabolite repre... 136 9.0e-07 1
TAIR|locus:2832132 - symbol:AT5G11350 "AT5G11350" species... 144 9.7e-07 1
UNIPROTKB|Q9UK39 - symbol:CCRN4L "Nocturnin" species:9606... 140 1.2e-06 1
TAIR|locus:2028611 - symbol:AT1G31500 species:3702 "Arabi... 138 1.8e-06 1
CGD|CAL0006120 - symbol:orf19.5527 species:5476 "Candida ... 136 4.4e-06 1
FB|FBgn0016762 - symbol:angel "angel" species:7227 "Droso... 129 1.4e-05 1
SGD|S000005402 - symbol:NGL1 "Putative endonuclease" spec... 127 2.4e-05 1
DICTYBASE|DDB_G0289461 - symbol:DDB_G0289461 "putative CC... 127 5.1e-05 1
SGD|S000004898 - symbol:NGL2 "Protein involved in 5.8S rR... 121 0.00020 1
FB|FBgn0261808 - symbol:cu "curled" species:7227 "Drosoph... 120 0.00036 1
>TAIR|locus:2076426 [details] [associations]
symbol:AT3G58560 "AT3G58560" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL137082 EMBL:AF462845 EMBL:AY133538 IPI:IPI00546024
PIR:T45676 RefSeq:NP_191415.2 UniGene:At.23801 UniGene:At.67574
ProteinModelPortal:Q8W0Z9 SMR:Q8W0Z9 IntAct:Q8W0Z9 PaxDb:Q8W0Z9
PRIDE:Q8W0Z9 EnsemblPlants:AT3G58560.1 GeneID:825025
KEGG:ath:AT3G58560 TAIR:At3g58560 HOGENOM:HOG000239764
InParanoid:Q8W0Z9 KO:K12603 OMA:YATSDTY PhylomeDB:Q8W0Z9
ProtClustDB:PLN03144 Genevestigator:Q8W0Z9 Uniprot:Q8W0Z9
Length = 602
Score = 1240 (441.6 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 235/338 (69%), Positives = 272/338 (80%)
Query: 1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
MLSV+RVHLPS+IPIVGCELTPYVLLRRPD +T+DVPESAP++GHFL+Y+W+R+QSD+
Sbjct: 1 MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYRWFRVQSDK 60
Query: 61 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXX 120
KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAASA
Sbjct: 61 KVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATEGN 120
Query: 121 XXXXXLFGRFNSTGSGVINXXXXXXXXXXXXXXXXXPLYPAAVTR---SGGETWFEVGRS 177
R NS+GSG +YP+A+T+ +GGET EVGRS
Sbjct: 121 DEEE--LPRLNSSGSG-----SGVLSTSVSLTNGSSSVYPSAITQKTGAGGETLVEVGRS 173
Query: 178 KTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237
KTYTP ADDI HVLKFECVVV+AETK VG T+LTSRVIPAPSPSPRRL ++G+D+
Sbjct: 174 KTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLISISGTDVT 233
Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
GH+DS+GR S GTF+VLSYNILSD YA+S+ YSYCP+WAL+W YRRQNLLREI+ YR
Sbjct: 234 --GHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLLREIVKYR 291
Query: 298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEV 335
ADIVCLQEVQNDHFEEFF PELDKHGYQ L+KRKTNEV
Sbjct: 292 ADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEV 329
Score = 130 (50.8 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 27/33 (81%), Positives = 30/33 (90%)
Query: 331 KTNEVEFNKAAQSLTDAILPSAQKKNALNRLVK 363
K EVEFNKAAQSLT+AI+P +QKKNALNRLVK
Sbjct: 353 KKYEVEFNKAAQSLTEAIIPVSQKKNALNRLVK 385
>TAIR|locus:2076446 [details] [associations]
symbol:AT3G58580 "AT3G58580" species:3702 "Arabidopsis
thaliana" [GO:0016787 "hydrolase activity" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] Pfam:PF03372 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 EMBL:AL137082
HOGENOM:HOG000239764 KO:K12603 ProtClustDB:PLN03144 EMBL:AK226830
IPI:IPI00519312 PIR:T45678 RefSeq:NP_191417.2 UniGene:At.34714
ProteinModelPortal:Q9M2F8 SMR:Q9M2F8 PaxDb:Q9M2F8 PRIDE:Q9M2F8
EnsemblPlants:AT3G58580.1 GeneID:825027 KEGG:ath:AT3G58580
TAIR:At3g58580 InParanoid:Q9M2F8 OMA:ENNANED PhylomeDB:Q9M2F8
Genevestigator:Q9M2F8 Uniprot:Q9M2F8
Length = 603
Score = 1215 (432.8 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 228/337 (67%), Positives = 264/337 (78%)
Query: 1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
MLSV+RVHLPS+IPIVGCELTPYVL+RRPD TT+DVPESAP++G+FLRY+WYR+QSD+
Sbjct: 1 MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNSTTDDVPESAPLEGYFLRYRWYRVQSDK 60
Query: 61 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXX 120
KV +CSVHP+EQATLQC+ C K + V KSYHCSPKCF+DAWQHHR LH+RAA+
Sbjct: 61 KVTICSVHPTEQATLQCVFCSKRRSLVPKSYHCSPKCFTDAWQHHRTLHERAAAENNANE 120
Query: 121 XXXXXLFGRFNSTGSGVI-NXXXXXXXXXXXXXXXXXPLYPAAVT-RSGGETWFEVGRSK 178
R NS GSG + P YP+ +T ++GGET EVG K
Sbjct: 121 DDD---LNRNNSAGSGSLAGSLSGSMSNLSIANNGPAPFYPSNITQKNGGETLVEVGGCK 177
Query: 179 TYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNM 238
TYTP+ADDI HVLKFECVV +AETK VGHP+T+LTSRVIPAPSPSPR+L PVNG+D
Sbjct: 178 TYTPTADDISHVLKFECVVANAETKQIVGHPSTILTSRVIPAPSPSPRKLIPVNGADG-- 235
Query: 239 MGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA 298
MGH+D D RI S G+F+VLSYNILSD A+S+ YSYCP WALSW YRRQNLLREI+GYRA
Sbjct: 236 MGHLDQDARIQSAGSFTVLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRA 295
Query: 299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEV 335
D+VCLQEVQ+DHF E FAPELDKHGYQALYKRKTNEV
Sbjct: 296 DVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEV 332
Score = 125 (49.1 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 331 KTNEVEFNKAAQSLTDAILPSAQKKNALNRLVK 363
K +VEFNKAAQSLTDA++P AQK+ ALNRLVK
Sbjct: 356 KKYDVEFNKAAQSLTDALIPQAQKRTALNRLVK 388
>SGD|S000000019 [details] [associations]
symbol:CCR4 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0030015
"CCR4-NOT core complex" evidence=IPI] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP;IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IGI;IMP;IDA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0016593 "Cdc73/Paf1
complex" evidence=IPI] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IGI] [GO:0006260 "DNA replication" evidence=IGI]
[GO:0000076 "DNA replication checkpoint" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IGI;IMP;IDA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] InterPro:IPR001611 PROSITE:PS51450
SGD:S000000019 Pfam:PF03372 GO:GO:0005634 EMBL:L05146 EMBL:BK006935
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0003723 GO:GO:0006368 GO:GO:0000932 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0048478 GO:GO:0032968 GO:GO:0004535
GO:GO:0000289 GO:GO:0030015 GO:GO:0007089 KO:K12603
HOGENOM:HOG000294222 OrthoDB:EOG4Z39P3 EMBL:S50459 PIR:S36713
RefSeq:NP_009381.1 PDB:4B8C PDBsum:4B8C ProteinModelPortal:P31384
SMR:P31384 DIP:DIP-2522N IntAct:P31384 MINT:MINT-615079
STRING:P31384 PaxDb:P31384 PeptideAtlas:P31384 EnsemblFungi:YAL021C
GeneID:851212 KEGG:sce:YAL021C OMA:CMQEVET NextBio:968091
Genevestigator:P31384 GermOnline:YAL021C GO:GO:0000175
GO:GO:0000076 Uniprot:P31384
Length = 837
Score = 244 (91.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 50/117 (42%), Positives = 66/117 (56%)
Query: 221 PSPSPRRLFPVN--GSDMNMMGHIDSDGRISSTG----TFSVLSYNILSDVYATSESYSY 274
P P RR +N G + +T TF+VLSYN L YAT + Y Y
Sbjct: 466 PLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYRY 525
Query: 275 CPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
PSWALSW YRR L +I+ Y +D++CLQEV++ FEE++ P LDKHGY ++ K
Sbjct: 526 TPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAK 582
>WB|WBGene00000376 [details] [associations]
symbol:ccr-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
Pfam:PF03372 GO:GO:0008340 GO:GO:0009792 GO:GO:0040011
GO:GO:0040018 GO:GO:0000003 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0040002 KO:K12603 EMBL:Z68753 RefSeq:NP_001129877.1
UniGene:Cel.6023 ProteinModelPortal:B3GWC3 SMR:B3GWC3 STRING:B3GWC3
PaxDb:B3GWC3 EnsemblMetazoa:ZC518.3d GeneID:178184
KEGG:cel:CELE_ZC518.3 CTD:178184 WormBase:ZC518.3d
InParanoid:B3GWC3 NextBio:900070 ArrayExpress:B3GWC3 Uniprot:B3GWC3
Length = 677
Score = 240 (89.5 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 45/109 (41%), Positives = 66/109 (60%)
Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
M+ H D + I+ TF+VL YN+L D YAT YSYCPSWAL+W YR+ +++EI Y
Sbjct: 278 MIRHADPERPIA---TFTVLCYNVLCDKYATVNQYSYCPSWALNWEYRKGLIIKEIRTYE 334
Query: 298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTD 346
AD++ LQEV+ + F F PEL + GY +++ K+ + + D
Sbjct: 335 ADVITLQEVETEQFRTLFQPELKQLGYAGIFEAKSRAKTMGEEERKYVD 383
>POMBASE|SPCC31H12.08c [details] [associations]
symbol:ccr4 "CCR4-Not complex subunit Ccr4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] InterPro:IPR001611
PROSITE:PS51450 PomBase:SPCC31H12.08c Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 eggNOG:COG4886 GO:GO:0003723 GO:GO:0090305
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 GO:GO:0030015 KO:K12603
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 PIR:T41296
RefSeq:NP_587901.1 ProteinModelPortal:O74874 STRING:O74874
EnsemblFungi:SPCC31H12.08c.1 GeneID:2538913 KEGG:spo:SPCC31H12.08c
NextBio:20800091 GO:GO:0006354 Uniprot:O74874
Length = 690
Score = 240 (89.5 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 40/93 (43%), Positives = 65/93 (69%)
Query: 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE 313
F+++SYN+L + YATS Y Y PSWALSW+YR+ +++E+ GY ADI+CLQEV ++++
Sbjct: 336 FTIMSYNVLCERYATSTLYGYTPSWALSWSYRKDLIMQELGGYNADIICLQEVDVENYDT 395
Query: 314 FFAPELDKHGYQALYKRKTNEVEFNKAAQSLTD 346
FFAP++ GY+ ++ K+ N+ + + D
Sbjct: 396 FFAPQMSLKGYKGVHFPKSRVRTMNEVERRIVD 428
>FB|FBgn0011725 [details] [associations]
symbol:twin "twin" species:7227 "Drosophila melanogaster"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 EMBL:AE014297
GO:GO:0005737 InterPro:IPR003591 SMART:SM00369 GO:GO:0048477
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0030014 GO:GO:0000289
KO:K12603 OMA:YMLDNLA UniGene:Dm.33521 GeneID:42880
KEGG:dme:Dmel_CG31137 CTD:42880 FlyBase:FBgn0011725 ChiTaRS:twin
GenomeRNAi:42880 NextBio:831058 EMBL:BT010039 RefSeq:NP_732964.1
SMR:Q8IMX1 STRING:Q8IMX1 EnsemblMetazoa:FBtr0084569 UCSC:CG31137-RC
InParanoid:Q8IMX1 Uniprot:Q8IMX1
Length = 567
Score = 234 (87.4 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 43/103 (41%), Positives = 63/103 (61%)
Query: 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE 313
F+V+ YN+L D YAT + Y YCPSWAL W YR+++++ EI Y ADI+ LQE++ + F
Sbjct: 207 FTVMCYNVLCDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYH 266
Query: 314 FFAPELDKHGYQALYKRKTNEVEFNKAAQSLTD--AILPSAQK 354
FF PEL GY+ ++ K+ ++ + D AI A K
Sbjct: 267 FFLPELKNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASK 309
>ZFIN|ZDB-GENE-071004-97 [details] [associations]
symbol:zgc:171797 "zgc:171797" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 ZFIN:ZDB-GENE-071004-97
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 OMA:ENVYANR EMBL:AL935334
IPI:IPI00495563 Ensembl:ENSDART00000030357 Bgee:F1QA17
Uniprot:F1QA17
Length = 558
Score = 232 (86.7 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 43/116 (37%), Positives = 69/116 (59%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T +V+ YN+L D YAT + Y YCPSWAL+W+YR++++++EI+ ADI+ LQEV
Sbjct: 182 RSRPTALLTVMCYNVLCDKYATRQLYGYCPSWALNWSYRKKSIMQEILNCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTD--AILPSAQKKNALNR 360
+ + + FF EL K GY + K+ +++ + D AI +K N + +
Sbjct: 242 ETEQYFNFFLLELSKQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFNVVQK 297
>UNIPROTKB|E1C678 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY CTD:57472 EMBL:AADN02028573
EMBL:AADN02028574 EMBL:AADN02028575 IPI:IPI00583544
RefSeq:XP_414612.3 UniGene:Gga.56102 Ensembl:ENSGALT00000009699
GeneID:416293 KEGG:gga:416293 Uniprot:E1C678
Length = 557
Score = 227 (85.0 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + FF EL + GY + K+
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKS 267
>UNIPROTKB|Q9ULM6 [details] [associations]
symbol:CNOT6 "CCR4-NOT transcription complex subunit 6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0006351 GO:GO:0003723 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:CH471165 GO:GO:0004535 GO:GO:0000289 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 CleanEx:HS_CCR4 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 EMBL:AB033020 EMBL:BC152469 IPI:IPI00008205
RefSeq:NP_056270.2 UniGene:Hs.608380 ProteinModelPortal:Q9ULM6
SMR:Q9ULM6 DIP:DIP-46838N IntAct:Q9ULM6 STRING:Q9ULM6
PhosphoSite:Q9ULM6 DMDM:46396033 PRIDE:Q9ULM6 DNASU:57472
Ensembl:ENST00000261951 Ensembl:ENST00000393356 GeneID:57472
KEGG:hsa:57472 UCSC:uc003mlx.3 CTD:57472 GeneCards:GC05P179921
HGNC:HGNC:14099 HPA:HPA044568 MIM:608951 neXtProt:NX_Q9ULM6
PharmGKB:PA26677 InParanoid:Q9ULM6 PhylomeDB:Q9ULM6
GenomeRNAi:57472 NextBio:63703 ArrayExpress:Q9ULM6 Bgee:Q9ULM6
CleanEx:HS_CNOT6 Genevestigator:Q9ULM6 GermOnline:ENSG00000113300
GO:GO:2000327 Uniprot:Q9ULM6
Length = 557
Score = 227 (85.0 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADIV LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + FF EL + GY + K+
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKS 267
>UNIPROTKB|Q5BJ41 [details] [associations]
symbol:cnot6 "CCR4-NOT transcription complex subunit 6"
species:8355 "Xenopus laevis" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOVERGEN:HBG052641 CTD:57472
GO:GO:2000327 EMBL:BC091632 RefSeq:NP_001184194.1 UniGene:Xl.52932
ProteinModelPortal:Q5BJ41 GeneID:100505426 KEGG:xla:100505426
Uniprot:Q5BJ41
Length = 552
Score = 226 (84.6 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 177 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 236
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + FF EL + GY + K+
Sbjct: 237 ETEQYYSFFLVELKERGYNGFFSPKS 262
>UNIPROTKB|A6QR51 [details] [associations]
symbol:CNOT6 "CNOT6 protein" species:9913 "Bos taurus"
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472
EMBL:DAAA02018941 EMBL:DAAA02018942 EMBL:DAAA02018943 EMBL:BC150116
IPI:IPI00711873 RefSeq:NP_001094631.1 UniGene:Bt.37548
STRING:A6QR51 Ensembl:ENSBTAT00000023088 GeneID:534707
KEGG:bta:534707 InParanoid:A6QR51 NextBio:20876510 Uniprot:A6QR51
Length = 557
Score = 226 (84.6 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + FF EL + GY + K+
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKS 267
>UNIPROTKB|E2QS92 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 InterPro:IPR003591 SMART:SM00369
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AAEX03007668 RefSeq:XP_538584.2 Ensembl:ENSCAFT00000000745
GeneID:481463 Uniprot:E2QS92
Length = 557
Score = 226 (84.6 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + FF EL + GY + K+
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKS 267
>MGI|MGI:2144529 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 MGI:MGI:2144529
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
KO:K12603 OMA:YATSDTY HOGENOM:HOG000294222 CleanEx:MM_CCR4
HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327
EMBL:AY043269 EMBL:AK129307 EMBL:AL606479 EMBL:BC049984
EMBL:BC057190 EMBL:BC062950 IPI:IPI00322541 IPI:IPI00410965
IPI:IPI00410966 RefSeq:NP_997649.1 UniGene:Mm.247113
UniGene:Mm.431753 ProteinModelPortal:Q8K3P5 SMR:Q8K3P5
STRING:Q8K3P5 PhosphoSite:Q8K3P5 PRIDE:Q8K3P5 DNASU:104625
Ensembl:ENSMUST00000020624 Ensembl:ENSMUST00000145353 GeneID:104625
KEGG:mmu:104625 UCSC:uc007iqy.1 UCSC:uc007iqz.1 UCSC:uc007ira.1
InParanoid:Q8K3P5 NextBio:357192 Bgee:Q8K3P5 CleanEx:MM_CNOT6
Genevestigator:Q8K3P5 GermOnline:ENSMUSG00000020362 Uniprot:Q8K3P5
Length = 557
Score = 226 (84.6 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + FF EL + GY + K+
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKS 267
>RGD|1310783 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO;ISS]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1310783
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327 EMBL:BC079308
IPI:IPI00464576 RefSeq:NP_001013878.1 UniGene:Rn.93562
ProteinModelPortal:Q6AXU9 SMR:Q6AXU9 STRING:Q6AXU9
PhosphoSite:Q6AXU9 PRIDE:Q6AXU9 GeneID:287249 KEGG:rno:287249
UCSC:RGD:1310783 NextBio:625750 ArrayExpress:Q6AXU9
Genevestigator:Q6AXU9 GermOnline:ENSRNOG00000002803 Uniprot:Q6AXU9
Length = 557
Score = 226 (84.6 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + FF EL + GY + K+
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKS 267
>UNIPROTKB|F1S5Q4 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 InterPro:IPR025875 Pfam:PF12799
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:ENNANED EMBL:CU929694 Ensembl:ENSSSCT00000015302 Uniprot:F1S5Q4
Length = 566
Score = 224 (83.9 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 191 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 250
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + FF EL GY + K+
Sbjct: 251 ETEQYYSFFLVELKDRGYSGFFSPKS 276
>UNIPROTKB|E1BE73 [details] [associations]
symbol:LOC100849029 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:DAAA02018160 IPI:IPI00694976
Ensembl:ENSBTAT00000005694 Uniprot:E1BE73
Length = 422
Score = 217 (81.4 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQEV
Sbjct: 49 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEV 108
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + F P L + GY + K+
Sbjct: 109 ETEQYFTLFLPALKERGYDGFFSPKS 134
>RGD|1309128 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit 6-like"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IEA;ISO] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA;ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0061157 "mRNA destabilization" evidence=IEA;ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1309128
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
GO:GO:0061157 IPI:IPI00363898 Ensembl:ENSRNOT00000002843
Uniprot:F1M642
Length = 553
Score = 219 (82.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ + ADI+ LQEV
Sbjct: 180 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEV 239
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + F P L GY + K+
Sbjct: 240 ETEQYFTLFLPALKDRGYDGFFSPKS 265
>MGI|MGI:2443154 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit
6-like" species:10090 "Mus musculus" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0061157 "mRNA
destabilization" evidence=IMP] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 MGI:MGI:2443154 GO:GO:0005737 GO:GO:0046872
GO:GO:0008284 GO:GO:0006397 eggNOG:COG4886
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 OMA:YMLDNLA GO:GO:0061157
EMBL:AK030112 EMBL:AK151728 EMBL:AC129600 EMBL:AC149285
EMBL:BC018506 IPI:IPI00124574 IPI:IPI00828817 IPI:IPI00881655
RefSeq:NP_659159.1 RefSeq:NP_849185.2 UniGene:Mm.28374
UniGene:Mm.384746 HSSP:P24014 ProteinModelPortal:Q8VEG6 SMR:Q8VEG6
DIP:DIP-46842N IntAct:Q8VEG6 STRING:Q8VEG6 PhosphoSite:Q8VEG6
PRIDE:Q8VEG6 Ensembl:ENSMUST00000113005 Ensembl:ENSMUST00000122003
Ensembl:ENSMUST00000155901 GeneID:231464 KEGG:mmu:231464
UCSC:uc008yfd.1 UCSC:uc008yfe.1 UCSC:uc008yfg.1 InParanoid:Q8VEG6
NextBio:380566 Bgee:Q8VEG6 CleanEx:MM_CNOT6L Genevestigator:Q8VEG6
Uniprot:Q8VEG6
Length = 555
Score = 219 (82.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ + ADI+ LQEV
Sbjct: 182 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + F P L GY + K+
Sbjct: 242 ETEQYFTLFLPALKDRGYDGFFSPKS 267
>UNIPROTKB|E1C5L3 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:AADN02016133 IPI:IPI00594662
Ensembl:ENSGALT00000016820 NextBio:20825132 Uniprot:E1C5L3
Length = 549
Score = 217 (81.4 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQEV
Sbjct: 177 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVSCDADIISLQEV 236
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + F P L + GY + K+
Sbjct: 237 ETEQYFTLFLPALKERGYDGFFSPKS 262
>UNIPROTKB|Q96LI5 [details] [associations]
symbol:CNOT6L "CCR4-NOT transcription complex subunit
6-like" species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005829 GO:GO:0046872
GO:GO:0008284 eggNOG:COG4886 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 EMBL:AK058188 EMBL:AC104701
EMBL:AL133112 IPI:IPI00164061 IPI:IPI00878418 PIR:T42705
RefSeq:NP_653172.2 UniGene:Hs.592519 PDB:3NGN PDB:3NGO PDB:3NGQ
PDBsum:3NGN PDBsum:3NGO PDBsum:3NGQ ProteinModelPortal:Q96LI5
SMR:Q96LI5 DIP:DIP-46837N IntAct:Q96LI5 STRING:Q96LI5
PhosphoSite:Q96LI5 DMDM:166216089 PRIDE:Q96LI5 DNASU:246175
Ensembl:ENST00000264903 Ensembl:ENST00000504123 GeneID:246175
KEGG:hsa:246175 UCSC:uc003hks.3 UCSC:uc003hkt.1
GeneCards:GC04M078634 HGNC:HGNC:18042 HPA:HPA042688
neXtProt:NX_Q96LI5 PharmGKB:PA38480 InParanoid:Q96LI5
EvolutionaryTrace:Q96LI5 GenomeRNAi:246175 NextBio:91870
ArrayExpress:Q96LI5 Bgee:Q96LI5 CleanEx:HS_CNOT6L
Genevestigator:Q96LI5 GO:GO:0061157 Uniprot:Q96LI5
Length = 555
Score = 217 (81.4 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQEV
Sbjct: 182 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT 332
+ + + F P L + GY + K+
Sbjct: 242 ETEQYFTLFLPALKERGYDGFFSPKS 267
>ZFIN|ZDB-GENE-060519-25 [details] [associations]
symbol:pde12 "phosphodiesterase 12" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-060519-25 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:FP067440 EMBL:CU638695
IPI:IPI00882873 Ensembl:ENSDART00000067608 ArrayExpress:F1RBC5
Bgee:F1RBC5 Uniprot:F1RBC5
Length = 591
Score = 216 (81.1 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 61/182 (33%), Positives = 90/182 (49%)
Query: 161 AAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPA 220
+A E W E G + +TPS DIG L +C + +G P L++S + A
Sbjct: 192 SAYITGDAECWREAGSERVFTPSNLDIGLRLMLKCTPGNGSK---IGEPKKLVSSSAVEA 248
Query: 221 PSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----YSYC 275
P + D HI + +++ G+ V+SYNIL+DVYA ++ Y YC
Sbjct: 249 -GPG------ICTFDNR---HIYTQ-KLTDEGSLRVVSYNILADVYAQTDLSKTVLYPYC 297
Query: 276 PSWALSWAYRRQNLLR-EIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNE 334
+AL YR QNL++ E+ GY ADI+CLQEV F + P LD G +++ K +
Sbjct: 298 APYALQMDYR-QNLIKKELSGYNADIICLQEVDKCVFVDVLCPALDAFGLDGVFRIKEKQ 356
Query: 335 VE 336
E
Sbjct: 357 HE 358
>CGD|CAL0002486 [details] [associations]
symbol:CCR4 species:5476 "Candida albicans" [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISM] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA;ISM] [GO:0009272 "fungal-type cell wall biogenesis"
evidence=IMP] [GO:0055091 "phospholipid homeostasis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0007089 "traversing start control point of mitotic cell cycle"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IEA] [GO:0000076 "DNA replication checkpoint"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] Pfam:PF00560 InterPro:IPR001611
PROSITE:PS51450 CGD:CAL0002486 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591
SMART:SM00369 GO:GO:0006351 GO:GO:0003723 GO:GO:0055091
GO:GO:0009267 GO:GO:0009272 GO:GO:0090305 EMBL:AL033501
EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0036170
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 KO:K12603 PIR:T18239 RefSeq:XP_717564.1
RefSeq:XP_717638.1 ProteinModelPortal:Q5A761 STRING:Q5A761
GeneID:3640749 GeneID:3640796 KEGG:cal:CaO19.12567
KEGG:cal:CaO19.5101 Uniprot:Q5A761
Length = 787
Score = 215 (80.7 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQND 309
S+ F+VLSYN L YAT + Y + PSWAL W YR+ L +E++ Y DIVC+QEV+
Sbjct: 452 SSDNFTVLSYNTLCQHYATPKMYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETK 511
Query: 310 HFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTD 346
F+EF+ P + +GY+ + KT ++ D
Sbjct: 512 TFQEFWLPVMTANGYKGYFFSKTRSKTMSETDSKKVD 548
>UNIPROTKB|Q5A761 [details] [associations]
symbol:CCR4 "Glucose-repressible alcohol dehydrogenase
transcriptional effector" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0055091 "phospholipid homeostasis" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] Pfam:PF00560
InterPro:IPR001611 PROSITE:PS51450 CGD:CAL0002486 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GO:GO:0006351 GO:GO:0003723
GO:GO:0055091 GO:GO:0009267 GO:GO:0009272 GO:GO:0090305
EMBL:AL033501 EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0036170
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 KO:K12603 PIR:T18239 RefSeq:XP_717564.1
RefSeq:XP_717638.1 ProteinModelPortal:Q5A761 STRING:Q5A761
GeneID:3640749 GeneID:3640796 KEGG:cal:CaO19.12567
KEGG:cal:CaO19.5101 Uniprot:Q5A761
Length = 787
Score = 215 (80.7 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQND 309
S+ F+VLSYN L YAT + Y + PSWAL W YR+ L +E++ Y DIVC+QEV+
Sbjct: 452 SSDNFTVLSYNTLCQHYATPKMYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETK 511
Query: 310 HFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTD 346
F+EF+ P + +GY+ + KT ++ D
Sbjct: 512 TFQEFWLPVMTANGYKGYFFSKTRSKTMSETDSKKVD 548
>ZFIN|ZDB-GENE-050522-302 [details] [associations]
symbol:cnot6l "CCR4-NOT transcription complex,
subunit 6-like" species:7955 "Danio rerio" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
ZFIN:ZDB-GENE-050522-302 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
eggNOG:COG4886 GO:GO:0004527 GO:GO:0090305 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 EMBL:BX640512
EMBL:BC095634 IPI:IPI00487742 RefSeq:NP_001018474.1
UniGene:Dr.76067 ProteinModelPortal:A2BHJ4 STRING:A2BHJ4
Ensembl:ENSDART00000076807 GeneID:553665 KEGG:dre:553665 CTD:246175
HOVERGEN:HBG052641 OMA:YMLDNLA OrthoDB:EOG43TZV7 NextBio:20880398
Bgee:A2BHJ4 Uniprot:A2BHJ4
Length = 559
Score = 208 (78.3 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH 310
T F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI ADI+ LQEV+ +
Sbjct: 181 TAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITNCDADIISLQEVETEQ 240
Query: 311 FEEFFAPELDKHGYQALYKRKT 332
+ FF L GY + K+
Sbjct: 241 YYTFFLETLKDRGYDGFFCPKS 262
>UNIPROTKB|F1NGS9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:AADN02014019 IPI:IPI00572753
Ensembl:ENSGALT00000009018 Uniprot:F1NGS9
Length = 569
Score = 191 (72.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 58/168 (34%), Positives = 82/168 (48%)
Query: 175 GRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGS 234
G + +TPS +G LK C D + G P + +S + A P V
Sbjct: 185 GGERVFTPSNALVGLRLKLRCTPGDGARRF--GAPREVESSGPVEA-GPG------VCTF 235
Query: 235 DMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----YSYCPSWALSWAYRRQNL 289
D H+ + ++ G+ +SYNIL+D YA +E Y YC +AL YR QNL
Sbjct: 236 DAR---HLYTR-KVCGRGSVRAVSYNILADAYAQTEFSRTVLYPYCAPYALEVDYR-QNL 290
Query: 290 LR-EIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVE 336
L+ E+ GY AD++CLQEV F + AP LD G + L+K K + E
Sbjct: 291 LKKELAGYNADLICLQEVDKSVFADSLAPALDAFGLEGLFKIKEKQHE 338
Score = 49 (22.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 22/87 (25%), Positives = 34/87 (39%)
Query: 22 PYVLLRRPDNAVTTEDVPESAPI-DGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLG- 79
P V L D +E+VP +A DG L+ R + +R + ++ L
Sbjct: 96 PEVRLFSRDGRAVSEEVPNAAAWQDGAVLQVGAARYRVERNPPALTELRLPRSLLAGFPV 155
Query: 80 CVKAKIPVAKSYHCSPKCFSDAWQHHR 106
C K A HC + + AW+ R
Sbjct: 156 CPKVSAEFAAPQHCLFR-WCPAWEEER 181
>UNIPROTKB|Q6L8Q7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 EMBL:CH471055 GO:GO:0016787 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AB115695
EMBL:AK074423 EMBL:AK300374 EMBL:AL831824 IPI:IPI00174390
IPI:IPI00886797 RefSeq:NP_808881.3 UniGene:Hs.572993
ProteinModelPortal:Q6L8Q7 SMR:Q6L8Q7 IntAct:Q6L8Q7 STRING:Q6L8Q7
PhosphoSite:Q6L8Q7 DMDM:172046137 PaxDb:Q6L8Q7 PRIDE:Q6L8Q7
DNASU:201626 Ensembl:ENST00000311180 GeneID:201626 KEGG:hsa:201626
UCSC:uc003diw.4 GeneCards:GC03P057541 H-InvDB:HIX0003393
HGNC:HGNC:25386 HPA:HPA043171 neXtProt:NX_Q6L8Q7
PharmGKB:PA162399016 InParanoid:Q6L8Q7 PhylomeDB:Q6L8Q7
GenomeRNAi:201626 NextBio:90179 ArrayExpress:Q6L8Q7 Bgee:Q6L8Q7
CleanEx:HS_PDE12 Genevestigator:Q6L8Q7 Uniprot:Q6L8Q7
Length = 609
Score = 194 (73.4 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 58/183 (31%), Positives = 89/183 (48%)
Query: 160 PAAVTRSG-GETWFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRV 217
P++++ S +W E + YTPS DIG LK C D + GH L + V
Sbjct: 213 PSSLSPSSPSSSWTETDVEERVYTPSNADIGLRLKLHCTPGDGQR---FGHSRELESVCV 269
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----Y 272
+ A P G+ H+ + +++ +SYNIL+D YA +E Y
Sbjct: 270 VEA---GP-------GTCTFDHRHLYTK-KVTEDALIRTVSYNILADTYAQTEFSRTVLY 318
Query: 273 SYCPSWALSWAYRRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
YC +AL YR QNL+ +E+ GY AD++CLQEV F + P L+ G + +++ K
Sbjct: 319 PYCAPYALELDYR-QNLIQKELTGYNADVICLQEVDRAVFSDSLVPALEAFGLEGVFRIK 377
Query: 332 TNE 334
+E
Sbjct: 378 QHE 380
>UNIPROTKB|E2R412 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
Pfam:PF03372 GO:GO:0005739 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 OMA:FRWYKEA
EMBL:AAEX03012165 RefSeq:XP_541830.2 Ensembl:ENSCAFT00000012438
GeneID:484714 KEGG:cfa:484714 Uniprot:E2R412
Length = 616
Score = 192 (72.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 59/183 (32%), Positives = 91/183 (49%)
Query: 160 PAAVTRSG-GETWFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRV 217
P++++ S +W E G + YTPS DIG LK C P G+ L SR
Sbjct: 220 PSSLSPSSPSPSWTETGVNERVYTPSNADIGLRLKLHCT--------P-GNGQRLGPSRE 270
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----Y 272
+ S P P G+ H+ + +++ +SYN+L+D YA +E Y
Sbjct: 271 LE--SVCPVEAGP--GTCTFDHRHLYTK-KVTDNSLIRTVSYNLLADTYAQTEFSRSVLY 325
Query: 273 SYCPSWALSWAYRRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
YC +AL YR QNL+ +E+ GY AD++CLQEV + F + P L+ G + +++ K
Sbjct: 326 PYCAPYALELDYR-QNLIQKELTGYNADLICLQEVDRNVFTDSLVPALEAFGLEGVFRIK 384
Query: 332 TNE 334
+E
Sbjct: 385 QHE 387
>UNIPROTKB|F1SGK9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:CU467952 RefSeq:XP_001926497.2
UniGene:Ssc.33948 Ensembl:ENSSSCT00000012546 GeneID:100157651
KEGG:ssc:100157651 Uniprot:F1SGK9
Length = 609
Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 54/183 (29%), Positives = 86/183 (46%)
Query: 160 PAAVTRSGGET-WFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRV 217
P++++ S W E G + YTPS DIG LK C + + P ++ +
Sbjct: 213 PSSLSPSSPSPGWTETGVNERVYTPSNADIGLRLKLHCTPGNGQRFGPSRELESVCSVEA 272
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----Y 272
P R H+ + +++ +SYN+L+D YA +E Y
Sbjct: 273 GPGTCTFDHR-------------HLYTK-KVTDDALIRTVSYNLLADTYAQTEFSRTVLY 318
Query: 273 SYCPSWALSWAYRRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
YC +AL YR QNL+ +E+ GY AD++CLQEV D F + P L+ G + +++ K
Sbjct: 319 PYCAPYALELDYR-QNLIQKELTGYNADLICLQEVDRDVFTDSLVPALEAFGLEGVFRIK 377
Query: 332 TNE 334
+E
Sbjct: 378 QHE 380
>MGI|MGI:1196310 [details] [associations]
symbol:Angel2 "angel homolog 2 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1196310
eggNOG:COG5239 GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 CTD:90806
OrthoDB:EOG4255SF EMBL:AB041602 EMBL:AK088834 EMBL:AK135709
EMBL:AK158731 EMBL:AK166619 EMBL:AK169653 EMBL:BC024907
IPI:IPI00230182 IPI:IPI00757120 IPI:IPI00867916 IPI:IPI00867920
IPI:IPI00867925 RefSeq:NP_001185949.1 RefSeq:NP_067396.3
UniGene:Mm.289914 ProteinModelPortal:Q8K1C0 PhosphoSite:Q8K1C0
PaxDb:Q8K1C0 PRIDE:Q8K1C0 Ensembl:ENSMUST00000027947
Ensembl:ENSMUST00000066632 Ensembl:ENSMUST00000110899
Ensembl:ENSMUST00000123384 GeneID:52477 KEGG:mmu:52477
UCSC:uc007ebj.2 UCSC:uc007ebm.2 UCSC:uc007ebn.2 InParanoid:Q8K1C0
OMA:WEYICNH NextBio:309017 Bgee:Q8K1C0 CleanEx:MM_ANGEL2
Genevestigator:Q8K1C0 Uniprot:Q8K1C0
Length = 544
Score = 179 (68.1 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 254 FSVLSYNILS-DVYA-TSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF 311
FSV+SYNILS D+ S Y +C L W++R N+L+EI + AD++CLQEVQ DH+
Sbjct: 167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHY 226
Query: 312 EEFFAPELDKHGYQALYKRKT 332
P L+ GY YK KT
Sbjct: 227 GTEIRPSLESLGYHCEYKMKT 247
>ZFIN|ZDB-GENE-030131-6498 [details] [associations]
symbol:angel2 "angel homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-030131-6498 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BX649591
EMBL:BC124747 IPI:IPI00506952 RefSeq:NP_001025131.1
UniGene:Dr.105422 ProteinModelPortal:Q5RGT6
Ensembl:ENSDART00000036371 GeneID:562704 KEGG:dre:562704 CTD:90806
InParanoid:A0AUR1 OMA:EQTERES OrthoDB:EOG4255SF NextBio:20884542
ArrayExpress:Q5RGT6 Bgee:Q5RGT6 Uniprot:Q5RGT6
Length = 569
Score = 179 (68.1 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 36/81 (44%), Positives = 49/81 (60%)
Query: 254 FSVLSYNILSDVYATSESYSY--CPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF 311
FSV+SYNILS +Y Y C L W R N+++E+ Y ADI+CLQEVQ DH+
Sbjct: 199 FSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQEDHY 258
Query: 312 EEFFAPELDKHGYQALYKRKT 332
++ P L+ GY +KR+T
Sbjct: 259 KQQIKPSLESLGYHCEFKRRT 279
>UNIPROTKB|Q08DF7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] Pfam:PF03372 GO:GO:0005739
GO:GO:0016787 eggNOG:COG5239 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BC123772 IPI:IPI00717658
RefSeq:NP_001069601.1 UniGene:Bt.42120 ProteinModelPortal:Q08DF7
Ensembl:ENSBTAT00000020675 GeneID:538860 KEGG:bta:538860 CTD:201626
HOGENOM:HOG000006935 HOVERGEN:HBG061027 InParanoid:Q08DF7
OMA:FRWYKEA OrthoDB:EOG4JDH6H NextBio:20877627 Uniprot:Q08DF7
Length = 609
Score = 179 (68.1 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 57/171 (33%), Positives = 83/171 (48%)
Query: 171 WFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLF 229
W E G + YTPS DIG LK C + + G P+ L S V P + F
Sbjct: 225 WTETGVDERVYTPSNADIGLRLKLHCTPGNGQR---FG-PSRELES-VCPVEAGPGTCTF 279
Query: 230 PVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----YSYCPSWALSWAY 284
D H+ + +++ +SYNIL+D YA +E Y YC +AL Y
Sbjct: 280 -----DHR---HLYTK-KVTDDALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDY 330
Query: 285 RRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNE 334
R QNL+ +E+ GY AD++CLQEV F + P L+ G + +++ K +E
Sbjct: 331 R-QNLIQKELTGYNADLICLQEVDRCVFTDSLMPALEAFGLEGVFRIKQHE 380
>RGD|1310975 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10116 "Rattus
norvegicus" [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] Pfam:PF03372
RGD:1310975 GO:GO:0016787 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
HOGENOM:HOG000006935 HOVERGEN:HBG061027 EMBL:BC079396
IPI:IPI00464947 UniGene:Rn.225980 ProteinModelPortal:Q6AXQ5
PhosphoSite:Q6AXQ5 Ensembl:ENSRNOT00000017800 UCSC:RGD:1310975
OMA:LICLANT ArrayExpress:Q6AXQ5 Genevestigator:Q6AXQ5
Uniprot:Q6AXQ5
Length = 608
Score = 178 (67.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 56/171 (32%), Positives = 82/171 (47%)
Query: 171 WFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLF 229
W E G + YTP DIG LK C + + G P+ L S V P + F
Sbjct: 224 WIETGVDERVYTPCNADIGLRLKLHCTPGNGQR---FG-PSRELES-VCPVEAGPGTCTF 278
Query: 230 PVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----YSYCPSWALSWAY 284
D H+ + +++ +SYNIL+D YA +E Y YC +AL Y
Sbjct: 279 -----DHR---HLYTK-KVTEDSFIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDY 329
Query: 285 RRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNE 334
R QNL+ +E+ GY AD++CLQEV F + P L+ G + +++ K +E
Sbjct: 330 R-QNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQHE 379
>MGI|MGI:2443226 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
Pfam:PF03372 MGI:MGI:2443226 GO:GO:0005739 GO:GO:0016787
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 UniGene:Mm.297768 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AK051991
EMBL:AK082947 EMBL:AK088843 EMBL:AK155088 EMBL:AK161083
EMBL:AK167708 EMBL:BC064450 IPI:IPI00420284 RefSeq:NP_848783.3
UniGene:Mm.290758 ProteinModelPortal:Q3TIU4 SMR:Q3TIU4
STRING:Q3TIU4 PhosphoSite:Q3TIU4 PaxDb:Q3TIU4 PRIDE:Q3TIU4
Ensembl:ENSMUST00000052932 GeneID:211948 KEGG:mmu:211948
UCSC:uc007stb.1 InParanoid:Q3TIU4 ChiTaRS:PDE12 NextBio:373405
Bgee:Q3TIU4 Genevestigator:Q3TIU4 Uniprot:Q3TIU4
Length = 608
Score = 177 (67.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 54/183 (29%), Positives = 83/183 (45%)
Query: 160 PAAVTRSGGET-WFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRV 217
PA+ + S + W E G + YTP DIG L+ C + + P +L
Sbjct: 212 PASSSHSSQPSAWIETGVDERVYTPCNADIGLRLRLHCTPGNGQRFGPSRELESLCPVEA 271
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----Y 272
P R H+ + +++ +SYNIL+D YA +E Y
Sbjct: 272 GPGTCTFDHR-------------HLYTK-KVTEDSFIRTVSYNILADTYAQTEFSRTVLY 317
Query: 273 SYCPSWALSWAYRRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
YC +AL YR QNL+ +E+ GY AD++CLQEV F + P L+ G + +++ K
Sbjct: 318 PYCAPYALELDYR-QNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIK 376
Query: 332 TNE 334
+E
Sbjct: 377 QHE 379
>UNIPROTKB|F1RYS2 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005737 GO:GO:0008284
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 OMA:YMLDNLA GO:GO:0061157 EMBL:CU914220
Ensembl:ENSSSCT00000009846 Uniprot:F1RYS2
Length = 557
Score = 173 (66.0 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQ+
Sbjct: 182 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQQN 241
Query: 307 QNDHF 311
+ F
Sbjct: 242 PKELF 246
>ASPGD|ASPL0000009331 [details] [associations]
symbol:ccr4 species:162425 "Emericella nidulans"
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
GO:GO:0006351 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000061
GO:GO:0090305 InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0004535 KO:K12603 RefSeq:XP_661206.1
ProteinModelPortal:Q5B778 STRING:Q5B778
EnsemblFungi:CADANIAT00005142 GeneID:2873021 KEGG:ani:AN3602.2
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 Uniprot:Q5B778
Length = 675
Score = 173 (66.0 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQN 308
+S SVLSYN L D AT Y Y PS LSW +RR+ +L E+ + DI+CLQE+
Sbjct: 304 TSPDKVSVLSYNTLCDSSATQSHYGYAPSRVLSWEFRRETILNELRAHDPDIICLQEIDQ 363
Query: 309 DHFEEFFAPELDKHGYQALY 328
+ EFF +L Y+ ++
Sbjct: 364 GSYNEFFREQLAYSDYKGVF 383
>MGI|MGI:1915987 [details] [associations]
symbol:Angel1 "angel homolog 1 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1915987
EMBL:AC102689 EMBL:BC019148 EMBL:AK220354 IPI:IPI00122555
RefSeq:NP_653107.2 UniGene:Mm.63979 ProteinModelPortal:Q8VCU0
PhosphoSite:Q8VCU0 PaxDb:Q8VCU0 PRIDE:Q8VCU0 DNASU:68737
Ensembl:ENSMUST00000021682 GeneID:68737 KEGG:mmu:68737
UCSC:uc011ypj.1 CTD:23357 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InParanoid:Q8VCU0 OMA:LYNFIRD OrthoDB:EOG4229KD
ChiTaRS:ANGEL1 NextBio:327814 Bgee:Q8VCU0 Genevestigator:Q8VCU0
InterPro:IPR005135 SUPFAM:SSF56219 Uniprot:Q8VCU0
Length = 667
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 254 FSVLSYNILSD--VYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF 311
F+++SYNIL+ + +SE Y +C L+W YR NL++E + DI+CLQEVQ DH+
Sbjct: 242 FTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHY 301
Query: 312 EEFFAPELDKHGYQALYKRKT 332
E P L G+ YKR+T
Sbjct: 302 WEQLEPSLRMMGFTCFYKRRT 322
>UNIPROTKB|A2VE74 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
CTD:25819 HOGENOM:HOG000237357 HOVERGEN:HBG006512 OMA:HPEYLVS
OrthoDB:EOG4NZTTH EMBL:DAAA02044446 EMBL:BC133608 IPI:IPI00693881
RefSeq:NP_001075923.1 UniGene:Bt.27843 STRING:A2VE74
Ensembl:ENSBTAT00000007876 GeneID:540641 KEGG:bta:540641
InParanoid:A2VE74 NextBio:20878745 Uniprot:A2VE74
Length = 427
Score = 146 (56.5 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 242 IDSDGRISSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADI 300
+ +DG SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI
Sbjct: 132 LPADGP-SSHPPIRVMQWNILAQALGEGKDNFVQCPMEALKWEERKCLILEEILAYQPDI 190
Query: 301 VCLQEVQNDHFEEFFAPELDKHGYQALY 328
+CLQEV DH+ + F P L + GYQ +
Sbjct: 191 LCLQEV--DHYFDTFQPLLSRLGYQGTF 216
Score = 46 (21.3 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 216 RVIPAPSPSPRRLFP 230
R P P P PRRL P
Sbjct: 21 RRAPGPPPPPRRLSP 35
>ZFIN|ZDB-GENE-050208-306 [details] [associations]
symbol:ccrn4la "CCR4 carbon catabolite repression
4-like a (S. cerevisiae)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
Pfam:PF03372 ZFIN:ZDB-GENE-050208-306 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AL929007 IPI:IPI00900988
RefSeq:XP_700794.1 UniGene:Dr.91274 Ensembl:ENSDART00000113469
GeneID:572044 KEGG:dre:572044 CTD:572044 NextBio:20890814
Uniprot:E7F177
Length = 432
Score = 146 (56.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 256 VLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF 314
++ +NIL+ + + CP AL+W+ R+ +L EI+ YR D+VCLQEV DH+ +
Sbjct: 135 IMQWNILAQALGEGKDGFVRCPMEALNWSERKYLILEEILTYRPDVVCLQEV--DHYFDT 192
Query: 315 FAPELDKHGYQALY 328
F P L GYQ+ +
Sbjct: 193 FQPVLSSLGYQSSF 206
>MGI|MGI:109382 [details] [associations]
symbol:Ccrn4l "CCR4 carbon catabolite repression 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI] [GO:0048511 "rhythmic process" evidence=IEA]
Pfam:PF03372 MGI:MGI:109382 GO:GO:0048511 GO:GO:0000932
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0033962 CleanEx:MM_CCR4 GO:GO:0000290
CTD:25819 HOGENOM:HOG000237357 HOVERGEN:HBG006512 OMA:HPEYLVS
OrthoDB:EOG4NZTTH ChiTaRS:CCRN4L EMBL:U70139 EMBL:AF183960
EMBL:AF199491 EMBL:AK087790 IPI:IPI00133829 IPI:IPI00662222
RefSeq:NP_033964.1 UniGene:Mm.86541 ProteinModelPortal:O35710
SMR:O35710 STRING:O35710 PhosphoSite:O35710 PaxDb:O35710
PRIDE:O35710 Ensembl:ENSMUST00000023849 Ensembl:ENSMUST00000167780
GeneID:12457 KEGG:mmu:12457 UCSC:uc008pdn.2 InParanoid:O35710
BRENDA:3.1.13.4 NextBio:281308 Bgee:O35710 Genevestigator:O35710
GermOnline:ENSMUSG00000023087 Uniprot:O35710
Length = 429
Score = 144 (55.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 249 SSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQ 307
SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV
Sbjct: 136 SSHSPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV- 194
Query: 308 NDHFEEFFAPELDKHGYQALY 328
DH+ + F P L + GYQ +
Sbjct: 195 -DHYFDTFQPLLSRLGYQGTF 214
>UNIPROTKB|F1PFN1 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0000290 "deadenylation-dependent decapping
of nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:HPEYLVS EMBL:AAEX03011735 Ensembl:ENSCAFT00000005996
Uniprot:F1PFN1
Length = 365
Score = 142 (55.0 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 249 SSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQ 307
SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV
Sbjct: 72 SSHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV- 130
Query: 308 NDHFEEFFAPELDKHGYQALY 328
DH+ + F P L + GYQ +
Sbjct: 131 -DHYFDTFQPLLSRLGYQGTF 150
>UNIPROTKB|F1NVT2 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:HPEYLVS EMBL:AADN02016273 IPI:IPI00577593
Ensembl:ENSGALT00000015887 ArrayExpress:F1NVT2 Uniprot:F1NVT2
Length = 371
Score = 142 (55.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 256 VLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF 314
V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV DH+ +
Sbjct: 85 VMQWNILAQALGEGKDNFVQCPMEALKWEERKCLILEEILAYKPDILCLQEV--DHYFDT 142
Query: 315 FAPELDKHGYQALY 328
F P L + GYQ +
Sbjct: 143 FEPLLSRLGYQCTF 156
>UNIPROTKB|I3LN01 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
CTD:25819 OMA:HPEYLVS EMBL:FP102607 RefSeq:XP_003129235.1
UniGene:Ssc.9136 Ensembl:ENSSSCT00000031350 GeneID:100513746
KEGG:ssc:100513746 Uniprot:I3LN01
Length = 427
Score = 143 (55.4 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 244 SDGRISSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVC 302
+DG SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+C
Sbjct: 134 ADGP-SSHPPIRVMQWNILAQALGEGKDNFVQCPLEALKWEERKCLILEEILAYQPDILC 192
Query: 303 LQEVQNDHFEEFFAPELDKHGYQALY 328
LQEV DH+ + F P L + GYQ +
Sbjct: 193 LQEV--DHYFDTFHPLLSRLGYQGTF 216
>RGD|1587344 [details] [associations]
symbol:Ccrn4l "CCR4 carbon catabolite repression 4-like (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IEA;ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA;ISO] [GO:0048511 "rhythmic process"
evidence=IEA] Pfam:PF03372 RGD:1587344 GO:GO:0048511 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 HOGENOM:HOG000237357
HOVERGEN:HBG006512 OrthoDB:EOG4NZTTH EMBL:AF199495 IPI:IPI00890357
UniGene:Rn.15040 ProteinModelPortal:Q9ET55 STRING:Q9ET55
PRIDE:Q9ET55 UCSC:RGD:1587344 InParanoid:Q9ET55
Genevestigator:Q9ET55 GermOnline:ENSRNOG00000010799 Uniprot:Q9ET55
Length = 253
Score = 136 (52.9 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 249 SSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQ 307
SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV
Sbjct: 62 SSHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV- 120
Query: 308 NDHFEEFFAPELDKHGYQALY 328
DH+ + P L + GYQ +
Sbjct: 121 -DHYFDTLQPLLSRLGYQGTF 140
>TAIR|locus:2832132 [details] [associations]
symbol:AT5G11350 "AT5G11350" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL360314 EMBL:AY069916 EMBL:AY143977 IPI:IPI00526280
RefSeq:NP_196696.2 UniGene:At.27820 ProteinModelPortal:Q8VYU4
SMR:Q8VYU4 PaxDb:Q8VYU4 PRIDE:Q8VYU4 EnsemblPlants:AT5G11350.1
GeneID:831006 KEGG:ath:AT5G11350 TAIR:At5g11350
HOGENOM:HOG000111455 InParanoid:Q8VYU4 OMA:LYFHIPR PhylomeDB:Q8VYU4
ProtClustDB:CLSN2690149 Genevestigator:Q8VYU4 Uniprot:Q8VYU4
Length = 754
Score = 144 (55.7 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 36/87 (41%), Positives = 51/87 (58%)
Query: 254 FSVLSYNILSDVYATSE---SYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH 310
F VLSYNIL+D A Y + P LSW +R+ L+ E+ + ADI+CLQEV D
Sbjct: 183 FVVLSYNILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEV--DK 240
Query: 311 FEEFFAPELDKHGYQALYKRKT-NEVE 336
F++ E+ GY A++K +T N V+
Sbjct: 241 FQDL-EEEMKHRGYSAIWKMRTGNAVD 266
>UNIPROTKB|Q9UK39 [details] [associations]
symbol:CCRN4L "Nocturnin" species:9606 "Homo sapiens"
[GO:0048511 "rhythmic process" evidence=IEA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03372 GO:GO:0005654 GO:GO:0003700
GO:GO:0048511 GO:GO:0006366 EMBL:CH471056 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 Reactome:REACT_24941
CleanEx:HS_CCR4 EMBL:AF183961 EMBL:BC113494 EMBL:BC113500
EMBL:AF199492 EMBL:AF199493 EMBL:AF199494 IPI:IPI00015890
RefSeq:NP_036250.2 UniGene:Hs.639842 UniGene:Hs.656047
ProteinModelPortal:Q9UK39 SMR:Q9UK39 IntAct:Q9UK39 STRING:Q9UK39
PhosphoSite:Q9UK39 DMDM:212276446 PaxDb:Q9UK39 PRIDE:Q9UK39
Ensembl:ENST00000280614 GeneID:25819 KEGG:hsa:25819 UCSC:uc003ihl.3
CTD:25819 GeneCards:GC04P139936 H-InvDB:HIX0004503 HGNC:HGNC:14254
MIM:608468 neXtProt:NX_Q9UK39 PharmGKB:PA26176 HOGENOM:HOG000237357
HOVERGEN:HBG006512 InParanoid:Q9UK39 OMA:HPEYLVS OrthoDB:EOG4NZTTH
PhylomeDB:Q9UK39 ChiTaRS:CCRN4L GenomeRNAi:25819 NextBio:47067
Bgee:Q9UK39 CleanEx:HS_CCRN4L Genevestigator:Q9UK39
GermOnline:ENSG00000151014 Uniprot:Q9UK39
Length = 431
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 256 VLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF 314
V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV DH+ +
Sbjct: 145 VMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV--DHYFDT 202
Query: 315 FAPELDKHGYQALY 328
F P L + GYQ +
Sbjct: 203 FQPLLSRLGYQGTF 216
>TAIR|locus:2028611 [details] [associations]
symbol:AT1G31500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016787 "hydrolase activity" evidence=ISS]
Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0006351
EMBL:AC074360 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 KO:K12603
EMBL:AC027135 EMBL:BT005746 EMBL:BT006109 EMBL:BX813786
EMBL:BX815872 EMBL:BX814736 EMBL:AK228566 IPI:IPI00516607
IPI:IPI00534982 IPI:IPI00548899 IPI:IPI00847028 IPI:IPI00915129
IPI:IPI00915138 RefSeq:NP_001077640.1 RefSeq:NP_174435.2
RefSeq:NP_973943.2 RefSeq:NP_973944.1 UniGene:At.40328
ProteinModelPortal:A8MS41 SMR:A8MS41 PaxDb:A8MS41 PRIDE:A8MS41
EnsemblPlants:AT1G31500.4 GeneID:840040 KEGG:ath:AT1G31500
TAIR:At1g31500 HOGENOM:HOG000265770 InParanoid:Q3ED43 OMA:CLKWKAR
PhylomeDB:A8MS41 ProtClustDB:CLSN2680732 Genevestigator:A8MS41
Uniprot:A8MS41
Length = 417
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE 313
F ++SYNIL+ VY S + P L W R +L + +AD CLQEV D ++
Sbjct: 92 FRLVSYNILAQVYVKSALLPHSPPACLKWKARSHAILSVLKNLQADFFCLQEV--DEYDS 149
Query: 314 FFAPELDKHGYQALYKRKTNE 334
F+ +D GY +Y ++T +
Sbjct: 150 FYRNNMDSLGYSGIYIQRTGQ 170
>CGD|CAL0006120 [details] [associations]
symbol:orf19.5527 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] CGD:CAL0006120
Pfam:PF03372 eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AACQ01000034 KO:K14812 RefSeq:XP_719092.1 GeneID:3639207
KEGG:cal:CaO19.5527 Uniprot:Q5AC23
Length = 519
Score = 136 (52.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 31/81 (38%), Positives = 43/81 (53%)
Query: 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFE 312
+ ++SYNIL+ E Y L W+ R Q LL E+ Y ADI+CLQEV +E
Sbjct: 114 SIKIMSYNILAQTLIRREIYP-TNGKILKWSVRSQILLDELKHYNADIMCLQEVDKVQYE 172
Query: 313 EFFAPELDKHGYQA-LYKRKT 332
F+ +L+K GY Y+ T
Sbjct: 173 GFWVSQLEKLGYSTRFYRNNT 193
>FB|FBgn0016762 [details] [associations]
symbol:angel "angel" species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:AE013599 GO:GO:0007275
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 EMBL:X85743 EMBL:AY058301 PIR:S71925
RefSeq:NP_477204.1 UniGene:Dm.4319 ProteinModelPortal:Q24239
DIP:DIP-17505N IntAct:Q24239 MINT:MINT-777493 STRING:Q24239
EnsemblMetazoa:FBtr0072083 GeneID:37748 KEGG:dme:Dmel_CG12273
UCSC:CG12273-RA CTD:37748 FlyBase:FBgn0016762 InParanoid:Q24239
OMA:DVRCAQV OrthoDB:EOG4FQZ73 PhylomeDB:Q24239 GenomeRNAi:37748
NextBio:805224 Bgee:Q24239 GermOnline:CG12273 Uniprot:Q24239
Length = 354
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 33/84 (39%), Positives = 46/84 (54%)
Query: 253 TFSVLSYNILSDVYATSESYSYC--PSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH 310
+F V+SYNIL+ + Y P LSW R+QNLLRE++ DI+CLQE+Q DH
Sbjct: 67 SFKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQRRQQNLLRELLKLDPDILCLQEMQFDH 126
Query: 311 FEEFFAPELDKHGYQA--LYKRKT 332
+G + +YK+KT
Sbjct: 127 LPVLVQRLRMGNGKKLAYVYKKKT 150
>SGD|S000005402 [details] [associations]
symbol:NGL1 "Putative endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] SGD:S000005402 Pfam:PF03372 GO:GO:0005739
EMBL:BK006948 GO:GO:0004527 GO:GO:0004519 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:Z74784 EMBL:AY693067
PIR:S66727 RefSeq:NP_014600.1 ProteinModelPortal:Q08213 SMR:Q08213
DIP:DIP-4236N IntAct:Q08213 MINT:MINT-522599 STRING:Q08213
PaxDb:Q08213 EnsemblFungi:YOL042W GeneID:854115 KEGG:sce:YOL042W
CYGD:YOL042w HOGENOM:HOG000000773 OMA:CAIFFRS OrthoDB:EOG42C1JF
NextBio:975810 Genevestigator:Q08213 GermOnline:YOL042W
Uniprot:Q08213
Length = 363
Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 226 RRLFPVNGSDMNMMG-HIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAY 284
RR PV S +G ++ D R F++L+YN+LS Y + Y+Y +W+Y
Sbjct: 4 RRFIPVVQSTKQNIGKYVRKDAR------FTLLTYNMLSPSYMWPQVYTYVAEPYKNWSY 57
Query: 285 RRQNLLREIIG-YRADIVCLQEVQNDHFEEFF 315
R + L +E++ ++ADI+CLQE+ +E+++
Sbjct: 58 RHRLLEKELLNTFKADIMCLQEMTARDYEDYW 89
>DICTYBASE|DDB_G0289461 [details] [associations]
symbol:DDB_G0289461 "putative CCR4-NOT complex
subunit 6" species:44689 "Dictyostelium discoideum" [GO:0003674
"molecular_function" evidence=ND] [GO:0030015 "CCR4-NOT core
complex" evidence=ISS] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
dictyBase:DDB_G0289461 Pfam:PF03372 EMBL:AAFI02000141 GO:GO:0004527
GO:GO:0004519 eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0030015 RefSeq:XP_636212.1 ProteinModelPortal:Q54HH3
EnsemblProtists:DDB0237634 GeneID:8627150 KEGG:ddi:DDB_G0289461
OMA:REGCFIF Uniprot:Q54HH3
Length = 573
Score = 127 (49.8 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 254 FSVLSYNILSDVYATSESYSYCPSWALSW-AYRRQNLLREIIGYRADIVCLQEVQNDHFE 312
+ ++ YNIL+D Y + Y++ S++L W +YR L+ +I+ Y+ADIV QEV +++
Sbjct: 220 YRIIQYNILADCYVSDSWYTHSASYSLRWNSYRSYLLIEQILQYKADIVGTQEVDRLYWQ 279
Query: 313 EFFAPELDKHG---YQALYKRKTNE 334
F E++ G Y Y +NE
Sbjct: 280 LF--KEMNVRGGYDYYPSYANDSNE 302
>SGD|S000004898 [details] [associations]
symbol:NGL2 "Protein involved in 5.8S rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=ISS;IMP] [GO:0005622
"intracellular" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IMP] SGD:S000004898 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0005622 EMBL:BK006946
GO:GO:0004527 EMBL:Z49704 GO:GO:0004521 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0006364 PIR:S54592
RefSeq:NP_014012.1 ProteinModelPortal:Q03264 DIP:DIP-894N
IntAct:Q03264 STRING:Q03264 PaxDb:Q03264 PeptideAtlas:Q03264
EnsemblFungi:YMR285C GeneID:855329 KEGG:sce:YMR285C CYGD:YMR285c
GeneTree:ENSGT00550000076051 HOGENOM:HOG000248147 KO:K14812
OMA:MRAISLY OrthoDB:EOG4K3Q4X NextBio:979049 Genevestigator:Q03264
GermOnline:YMR285C Uniprot:Q03264
Length = 515
Score = 121 (47.7 bits), Expect = 0.00020, P = 0.00020
Identities = 29/86 (33%), Positives = 43/86 (50%)
Query: 251 TG-TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQN-LLREIIGYRADIVCLQEVQN 308
TG F +++YN L+ + + AL W YRR LL E Y +D++CLQE+ +
Sbjct: 108 TGFRFKLMTYNCLAQALIRRKLFPDSGD-ALKW-YRRSKVLLNEFKYYNSDVICLQEIDH 165
Query: 309 DHFEEFFAPELDKHGYQALYKRKTNE 334
F+ F+ E K GY Y R +
Sbjct: 166 IQFQSFWKDEFSKLGYDGQYYRNATK 191
>FB|FBgn0261808 [details] [associations]
symbol:cu "curled" species:7227 "Drosophila melanogaster"
[GO:0005811 "lipid particle" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0009416 "response to light stimulus"
evidence=IMP] [GO:0045475 "locomotor rhythm" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
Pfam:PF03372 EMBL:AE014297 GO:GO:0005811 GO:GO:0009416
GO:GO:0045475 eggNOG:COG5239 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0030014 GO:GO:0000289
RefSeq:NP_001097746.1 UniGene:Dm.11906 ProteinModelPortal:A8JQX3
SMR:A8JQX3 STRING:A8JQX3 EnsemblMetazoa:FBtr0113219 GeneID:41339
KEGG:dme:Dmel_CG31299 UCSC:CG31299-RD CTD:41339 FlyBase:FBgn0261808
OrthoDB:EOG4CC2GK PhylomeDB:A8JQX3 GenomeRNAi:41339 NextBio:823348
Bgee:A8JQX3 Uniprot:A8JQX3
Length = 642
Score = 120 (47.3 bits), Expect = 0.00036, P = 0.00036
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 256 VLSYNILSDVYAT-SESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF 314
+L +NILS ++ + CP AL+W +R+ +++EI+ + D++CLQEV DHF+ F
Sbjct: 313 LLQWNILSQTLGQHNDGFVRCPEEALTWEHRKYLIVQEILQNQPDVICLQEV--DHFK-F 369
Query: 315 FAPELDKHGYQALY 328
L Y ++
Sbjct: 370 LQTVLGSQNYAGIF 383
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 365 339 0.00094 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 615 (65 KB)
Total size of DFA: 252 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.29u 0.11s 26.40t Elapsed: 00:00:01
Total cpu time: 26.30u 0.11s 26.41t Elapsed: 00:00:01
Start: Fri May 10 00:42:48 2013 End: Fri May 10 00:42:49 2013