Query 017840
Match_columns 365
No_of_seqs 342 out of 1037
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:47:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 99.9 3.7E-26 1.3E-30 229.2 10.5 134 219-363 8-165 (398)
2 4b8c_D Glucose-repressible alc 99.6 5.5E-17 1.9E-21 172.9 3.5 193 152-348 278-504 (727)
3 3mpr_A Putative endonuclease/e 99.3 9E-13 3.1E-17 124.5 4.0 105 250-362 3-122 (298)
4 3l1w_A Uncharacterized protein 99.3 8.7E-12 3E-16 113.9 8.1 96 254-362 1-112 (257)
5 3g6s_A Putative endonuclease/e 99.2 3.4E-12 1.2E-16 117.4 5.1 99 252-362 2-118 (267)
6 4f1h_A Tyrosyl-DNA phosphodies 99.0 7.1E-10 2.4E-14 97.4 9.7 80 252-348 2-85 (250)
7 4gz1_A Tyrosyl-DNA phosphodies 99.0 3.9E-10 1.3E-14 100.9 6.0 82 250-347 6-90 (256)
8 4fva_A 5'-tyrosyl-DNA phosphod 98.8 1.1E-08 3.6E-13 91.7 8.3 52 249-313 9-60 (256)
9 4gew_A 5'-tyrosyl-DNA phosphod 98.6 5E-08 1.7E-12 95.8 8.8 67 249-331 115-181 (362)
10 2jc4_A Exodeoxyribonuclease II 98.6 4.1E-08 1.4E-12 88.6 7.5 67 254-339 1-71 (256)
11 3teb_A Endonuclease/exonucleas 98.6 4.6E-08 1.6E-12 88.7 7.5 64 252-328 2-81 (266)
12 3i41_A Beta-hemolysin; beta to 98.6 2.1E-08 7.1E-13 95.9 5.1 69 249-325 25-94 (317)
13 1ako_A Exonuclease III; AP-end 98.6 6.4E-08 2.2E-12 87.9 6.4 71 254-343 1-75 (268)
14 1zwx_A SMCL, sphingomyelinase- 98.4 1.7E-07 5.8E-12 87.2 5.7 66 250-325 7-75 (301)
15 1vyb_A ORF2 contains A reverse 98.4 5.7E-07 1.9E-11 80.0 7.5 71 251-340 5-81 (238)
16 2voa_A AF_EXO, XTHA, exodeoxyr 98.4 4.9E-07 1.7E-11 81.8 6.9 67 254-339 2-72 (257)
17 2ddr_A Sphingomyelin phosphodi 98.2 8E-07 2.7E-11 82.6 5.5 52 249-310 5-58 (306)
18 2a40_B Deoxyribonuclease-1; WA 98.2 1.3E-06 4.3E-11 80.5 6.3 79 254-348 1-95 (260)
19 2jc5_A Exodeoxyribonuclease; h 98.2 2.2E-06 7.4E-11 77.3 6.9 69 254-342 2-78 (259)
20 2o3h_A DNA-(apurinic or apyrim 98.1 2.8E-06 9.6E-11 78.4 6.2 78 249-345 24-110 (285)
21 3g91_A MTH0212, exodeoxyribonu 98.1 4E-06 1.4E-10 76.8 6.0 73 253-343 3-81 (265)
22 1hd7_A DNA-(apurinic or apyrim 98.0 6.1E-06 2.1E-10 78.4 7.2 76 250-344 58-142 (318)
23 1wdu_A TRAS1 ORF2P; four-layer 97.9 1.2E-05 4.2E-10 72.8 7.0 73 251-345 17-95 (245)
24 2j63_A AP-endonuclease; base e 97.9 7.1E-06 2.4E-10 83.6 5.4 76 250-342 146-232 (467)
25 2imq_X Salivary nitrophorin; f 97.4 0.0001 3.5E-09 69.7 4.7 80 251-346 6-101 (282)
26 3s6b_A Methionine aminopeptida 97.2 8E-06 2.7E-10 81.0 -6.1 105 122-227 49-183 (368)
27 2ei9_A Non-LTR retrotransposon 96.9 0.00052 1.8E-08 63.1 4.1 37 253-307 7-43 (240)
28 1sr4_B CDT B, cytolethal diste 96.7 0.0014 4.7E-08 62.1 4.8 43 253-308 4-47 (261)
29 2b3h_A Methionine aminopeptida 96.5 3.9E-05 1.3E-09 74.8 -7.3 105 122-227 18-155 (329)
30 4fuk_A Methionine aminopeptida 96.3 5.9E-05 2E-09 73.4 -7.4 102 126-228 2-144 (337)
31 2f1n_A CDT B, cytolethal diste 95.7 0.0035 1.2E-07 59.3 2.1 46 249-307 11-57 (262)
32 2od1_A Protein CBFA2T1; zinc f 95.1 0.012 4.2E-07 43.1 2.9 38 63-108 14-51 (60)
33 2dj8_A Protein CBFA2T1; zinc f 95.1 0.015 5E-07 42.7 3.1 38 63-108 16-53 (60)
34 2jw6_A Deformed epidermal auto 95.0 0.011 3.6E-07 41.9 2.1 39 62-108 9-47 (52)
35 2odd_A Protein CBFA2T1; MYND z 94.8 0.015 5E-07 43.1 2.5 37 64-108 19-55 (64)
36 2d8q_A BLU protein, zinc finge 94.6 0.022 7.5E-07 43.3 3.1 40 63-110 16-55 (70)
37 3qwp_A SET and MYND domain-con 89.6 0.16 5.6E-06 50.5 3.0 38 63-108 48-87 (429)
38 3qww_A SET and MYND domain-con 89.5 0.16 5.6E-06 50.7 2.8 39 63-109 50-90 (433)
39 3n71_A Histone lysine methyltr 86.3 0.41 1.4E-05 48.6 3.5 39 63-109 50-90 (490)
40 1i9z_A Synaptojanin, phosphati 86.0 1.9 6.4E-05 42.0 7.9 37 251-306 24-65 (347)
41 2xsw_A 72 kDa inositol polypho 84.7 1.1 3.7E-05 43.9 5.5 61 252-327 26-90 (357)
42 3mtc_A Type II inositol-1,4,5- 56.9 25 0.00087 33.6 7.4 12 296-307 35-48 (313)
43 4a9c_A Phosphatidylinositol-3, 50.9 51 0.0017 31.5 8.5 35 296-330 46-87 (316)
44 1x4s_A Protein FON, zinc finge 49.7 9 0.00031 28.0 2.2 30 62-100 11-44 (59)
45 4dix_A Plectin-related protein 45.6 13 0.00046 33.8 3.2 27 173-200 60-86 (230)
46 2yqq_A Zinc finger HIT domain- 41.8 14 0.00048 26.7 2.2 27 65-100 15-41 (56)
47 1lv3_A Hypothetical protein YA 35.6 12 0.0004 28.2 1.0 28 74-101 9-39 (68)
48 2w0t_A Lethal(3)malignant brai 22.8 30 0.001 23.7 1.1 28 74-101 6-37 (43)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.93 E-value=3.7e-26 Score=229.17 Aligned_cols=134 Identities=33% Similarity=0.697 Sum_probs=113.7
Q ss_pred CCCCCCCCceeeeCCCCCCcccccCCCCCCCCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCC
Q 017840 219 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA 298 (365)
Q Consensus 219 p~P~P~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~a 298 (365)
+.|.|++|.|+.+... ....+...|||||||||+|.|+++++|+|||++.++|.+|++.|+++|..++|
T Consensus 8 ~~~~p~~R~wi~~~~~-----------~~~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~p 76 (398)
T 3ngq_A 8 HPEQLPPRPWITLKER-----------DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDA 76 (398)
T ss_dssp ----CCCCCEEECSCC-----------C--CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcceECCCC-----------CCCCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCC
Confidence 4567788999998742 12234568999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccChhhHHHHHHhhhhcCCceEEEeccC------------Ce---EEEecccccccccc---------CCChhh
Q 017840 299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT------------NE---VEFNKAAQSLTDAI---------LPSAQK 354 (365)
Q Consensus 299 DIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K~------------g~---i~fn~~~~~l~e~~---------~~~~~~ 354 (365)
||||||||+.++|.+++.+.|..+||.++|..|+ ++ |||++++|+++++. .++.+|
T Consensus 77 DIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~ 156 (398)
T 3ngq_A 77 DIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGS 156 (398)
T ss_dssp SEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTC
T ss_pred CEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccc
Confidence 9999999999899888899999999999997553 23 99999999999876 346789
Q ss_pred Hhhhccccc
Q 017840 355 KNALNRLVK 363 (365)
Q Consensus 355 ~~~~~r~~~ 363 (365)
+++++|+|+
T Consensus 157 ~~~~~Ri~t 165 (398)
T 3ngq_A 157 EAMLNRVMT 165 (398)
T ss_dssp HHHHHTTTT
T ss_pred hhhhcceee
Confidence 999999986
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=5.5e-17 Score=172.90 Aligned_cols=193 Identities=30% Similarity=0.540 Sum_probs=94.6
Q ss_pred CCCCccccCcccccCCC-cceeEeccceecCCChhccCcEEEEEEEeecCCCCCCCCC-ccee-----------eecccc
Q 017840 152 TNGSTPLYPAAVTRSGG-ETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGH-PNTL-----------LTSRVI 218 (365)
Q Consensus 152 ~~~~i~~~~~~~~~~~g-e~w~~vg~~~~YtPt~eDIG~llklecl~~dg~~~~plg~-~~sv-----------~Ts~Vi 218 (365)
..+.|..++........ +.++.-++...-.| ++|+.+-.|+.+.+.+|.- .+. +..+ +....+
T Consensus 278 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp--~~~~~l~~L~~L~L~~N~l--~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 278 SHNRLTSLPAELGSCFQLKYFYFFDNMVTTLP--WEFGNLCNLQFLGVEGNPL--EKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp TTSCCSSCCSSGGGGTTCSEEECCSSCCCCCC--SSTTSCTTCCCEECTTSCC--CSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCcCCccChhhcCCCCCCEEECCCCCCCccC--hhhhcCCCccEEeCCCCcc--CCCChHHHhhcchhhhHHhhccCcc
Confidence 44555544444222122 55555555554333 3488877788887777621 111 1111 111122
Q ss_pred CCCCCCCCceeeeCCCC--CCccccc----CCCCCCCCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHH
Q 017840 219 PAPSPSPRRLFPVNGSD--MNMMGHI----DSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLRE 292 (365)
Q Consensus 219 p~P~P~~R~~i~~~~~~--~~~~~~~----~~~~~~~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~e 292 (365)
-++.|....++.+.... ....+.+ ...........+++||||||++.|++...|+|||.+.++|.+|+..|+++
T Consensus 354 ~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~ 433 (727)
T 4b8c_D 354 EIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQ 433 (727)
T ss_dssp CCCCCCC-----------------------------------------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHH
T ss_pred cCcCccccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHH
Confidence 34556666666654320 0000000 00001123446999999999999999999999999999999999999999
Q ss_pred HhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEeccC------------Ce---EEEecccccccccc
Q 017840 293 IIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT------------NE---VEFNKAAQSLTDAI 348 (365)
Q Consensus 293 I~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K~------------g~---i~fn~~~~~l~e~~ 348 (365)
|..++|||||||||+.++|.+++.+.|+++||.|+|..|+ ++ |||++++|.+++..
T Consensus 434 I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~ 504 (727)
T 4b8c_D 434 ILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKD 504 (727)
T ss_dssp HHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC----------------CCCCEEEC-----------
T ss_pred HHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCCcccccccCCCCcccEEEEEEcccceEeeee
Confidence 9999999999999999999998899999999999995443 22 99999999999875
No 3
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=9e-13 Score=124.47 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=74.0
Q ss_pred CCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEe
Q 017840 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (365)
Q Consensus 250 ~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~ 329 (365)
.+.+||||||||+...-.. ......|..|++.|+++|..++|||||||||+.+++++ +...|..+.|.+...
T Consensus 3 ~~~~lrV~t~Ni~~~~~~~-------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~-l~~~l~~y~~~~~~~ 74 (298)
T 3mpr_A 3 QPTSLTVASYNLRNANGSD-------SARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKD-MKEALPGYDYIGVGR 74 (298)
T ss_dssp CCEEEEEEEEECCCCCHHH-------HHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHH-HHHHSTTEEEECCCT
T ss_pred CCCcEEEEEEEeccCCCCC-------cccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH-HHHhCCCCcEEEEec
Confidence 4567999999997432100 01256899999999999999999999999999887765 555564333333322
Q ss_pred c---cCCe---EEEeccccccccccC---------CChhhHhhhcccc
Q 017840 330 R---KTNE---VEFNKAAQSLTDAIL---------PSAQKKNALNRLV 362 (365)
Q Consensus 330 ~---K~g~---i~fn~~~~~l~e~~~---------~~~~~~~~~~r~~ 362 (365)
. ..|+ |+|+++++.+++... ++.+|+++++|++
T Consensus 75 ~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~ 122 (298)
T 3mpr_A 75 DDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRIC 122 (298)
T ss_dssp TTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEE
T ss_pred CCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCcee
Confidence 1 1333 999999999987642 3456888888854
No 4
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.25 E-value=8.7e-12 Score=113.87 Aligned_cols=96 Identities=18% Similarity=0.346 Sum_probs=69.9
Q ss_pred eEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEeccC-
Q 017840 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT- 332 (365)
Q Consensus 254 frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K~- 332 (365)
||||||||+...- .+....|++|++.|.++|..++|||||||||+.+++.+ +... .||..++..+.
T Consensus 1 lrv~t~Ni~~~~~---------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~-l~~~---l~y~~~~~~~~~ 67 (257)
T 3l1w_A 1 MKIATYNVRVDTE---------YDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRD-LKAY---TTFTCLSAEREG 67 (257)
T ss_dssp CEEEEEECCCCCG---------GGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH-HHHH---SSSEEEEEESSS
T ss_pred CEEEEEEeccCCC---------CccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH-HHhc---CCCcEEEecccC
Confidence 6899999985321 24457899999999999999999999999999887765 3333 48876654432
Q ss_pred ---Ce---EEEecccccccccc---------CCChhhHhhhcccc
Q 017840 333 ---NE---VEFNKAAQSLTDAI---------LPSAQKKNALNRLV 362 (365)
Q Consensus 333 ---g~---i~fn~~~~~l~e~~---------~~~~~~~~~~~r~~ 362 (365)
+. |+|+++++.+++.. .++.++++..+|.+
T Consensus 68 ~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~ 112 (257)
T 3l1w_A 68 DGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIA 112 (257)
T ss_dssp SSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEE
T ss_pred CCCCceEEEEEEcceEEEEecCeEECcCCCCccccccccccccee
Confidence 22 99999999988754 13334455666653
No 5
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.25 E-value=3.4e-12 Score=117.42 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=72.6
Q ss_pred CceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEecc
Q 017840 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331 (365)
Q Consensus 252 ~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K 331 (365)
++||||||||+.... .+....|..|++.|+++|..++|||||||||+.+++++ +...| .||..++..+
T Consensus 2 ~~l~v~t~Ni~~~~~---------~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~-l~~~l--~~y~~~~~~~ 69 (267)
T 3g6s_A 2 TDVRWATFNIRYDNP---------QDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQD-LRAGL--PEYDGIGVGR 69 (267)
T ss_dssp EEEEEEEEECCCCCG---------GGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHH-HHHHC--TTEEEECCCT
T ss_pred CcEEEEEEEeccCCC---------CccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHhc--cCCcEEEecC
Confidence 469999999985421 13467899999999999999999999999999877765 44445 3565554222
Q ss_pred -----CCe---EEEeccccccccccC---------CC-hhhHhhhcccc
Q 017840 332 -----TNE---VEFNKAAQSLTDAIL---------PS-AQKKNALNRLV 362 (365)
Q Consensus 332 -----~g~---i~fn~~~~~l~e~~~---------~~-~~~~~~~~r~~ 362 (365)
.|+ |+|+++++.+++... ++ .+|++..+|.+
T Consensus 70 ~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~ 118 (267)
T 3g6s_A 70 DDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIA 118 (267)
T ss_dssp TTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEE
T ss_pred CCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceE
Confidence 233 999999999987642 22 56777777753
No 6
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.04 E-value=7.1e-10 Score=97.40 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=55.9
Q ss_pred CceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEecc
Q 017840 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331 (365)
Q Consensus 252 ~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K 331 (365)
.+||||||||..- ...+|..|.+.|.+.|..++|||||||||+.+++.. +. ...++...+...
T Consensus 2 ~~l~v~t~Ni~g~-------------~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-l~---~~~~~~~~~~~~ 64 (250)
T 4f1h_A 2 SKLSIISWNVDGL-------------DTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQY-LK---KRAVSYLFFEGS 64 (250)
T ss_dssp CCEEEEEEECCTT-------------CCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH-HH---HHCTTEEEEESC
T ss_pred CeEEEEEEEeCCC-------------CCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HH---HhccCceeeccc
Confidence 4799999999521 134689999999999999999999999998776643 32 233444433322
Q ss_pred -CC---eEEEecccccccccc
Q 017840 332 -TN---EVEFNKAAQSLTDAI 348 (365)
Q Consensus 332 -~g---~i~fn~~~~~l~e~~ 348 (365)
.+ .++|.+.++.+++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 4f1h_A 65 DDGYFTGIMLRKSRVKFLESE 85 (250)
T ss_dssp SSSSEEEEEEETTTCEEEEEE
T ss_pred ccccCceeEEeeccccceecc
Confidence 22 277777777776543
No 7
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.98 E-value=3.9e-10 Score=100.88 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=57.0
Q ss_pred CCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEe
Q 017840 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (365)
Q Consensus 250 ~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~ 329 (365)
...+||||||||..- ...+|..|.+.|+++|..++|||||||||+.++++. +...+ .+|.....
T Consensus 6 ~~~~l~v~swNi~g~-------------~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-l~~~~--~~~~~~~~ 69 (256)
T 4gz1_A 6 DSSTISFITWNIDGL-------------DGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAY-LKKRA--ASYTIITG 69 (256)
T ss_dssp GGGEEEEEEEECCTT-------------CCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH-HHHHC--TTEEEEES
T ss_pred CCCcEEEEEEEcCCC-------------cCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH-HHhhc--cccceeec
Confidence 456899999999521 134689999999999999999999999998776644 33322 23333333
Q ss_pred ccCCe---EEEeccccccccc
Q 017840 330 RKTNE---VEFNKAAQSLTDA 347 (365)
Q Consensus 330 ~K~g~---i~fn~~~~~l~e~ 347 (365)
...+. |++++.++.+...
T Consensus 70 ~~~~~~~~~l~~~~~~~~~~~ 90 (256)
T 4gz1_A 70 NEEGYFTAILLKKGRVKFKSQ 90 (256)
T ss_dssp CSSSSEEEEEEETTTEEEEEE
T ss_pred cccCCceEEEEEeccccceec
Confidence 33232 7777777666554
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.79 E-value=1.1e-08 Score=91.67 Aligned_cols=52 Identities=25% Similarity=0.190 Sum_probs=42.3
Q ss_pred CCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHH
Q 017840 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE 313 (365)
Q Consensus 249 ~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~ 313 (365)
.++.+||||||||.. -...+|..|.+.|.+.|..++|||||||||..+++..
T Consensus 9 ~~~~~l~v~s~Ni~g-------------~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~ 60 (256)
T 4fva_A 9 LKGFEVSVMSWNIDG-------------LDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAP 60 (256)
T ss_dssp CTTCEEEEEEEECCT-------------TCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHH
T ss_pred CCCCEEEEEEEecCC-------------CCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHH
Confidence 455689999999941 1134689999999999999999999999998776544
No 9
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.65 E-value=5e-08 Score=95.79 Aligned_cols=67 Identities=24% Similarity=0.202 Sum_probs=49.1
Q ss_pred CCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEE
Q 017840 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (365)
Q Consensus 249 ~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~ 328 (365)
.++..||||||||-. -...+|..|+..|++.|..++|||||||||..+++.. +...+ .+|..++
T Consensus 115 ~~~~~lkVlSWNI~G-------------l~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~-l~~~~--~~y~~~~ 178 (362)
T 4gew_A 115 LKGFEVSVMSWNIDG-------------LDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAP-IDKLQ--SLYKIYY 178 (362)
T ss_dssp TTTCEEEEEEEECCT-------------TCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHH-HHGGG--GTEEEEE
T ss_pred CCCCeEEEEEEEeCC-------------CCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHH-HHHhc--CCceEEe
Confidence 456789999999941 1134688999999999999999999999998776654 44333 2455555
Q ss_pred ecc
Q 017840 329 KRK 331 (365)
Q Consensus 329 ~~K 331 (365)
..+
T Consensus 179 ~~~ 181 (362)
T 4gew_A 179 SNK 181 (362)
T ss_dssp SST
T ss_pred CCC
Confidence 433
No 10
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.65 E-value=4.1e-08 Score=88.59 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=50.7
Q ss_pred eEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEeccCC
Q 017840 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (365)
Q Consensus 254 frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K~g 333 (365)
||||||||. .|..|.+.|.++|..++||||||||+..... ++....|...||..++..+.+
T Consensus 1 lrv~t~Nv~------------------~~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~-~~~~~~~~~~gy~~~~~~~~~ 61 (256)
T 2jc4_A 1 MKITTWNVN------------------SLNVRLPQVQNLLADNPPDILVLQELKLDQD-KFPAAALQMMGWHCVWSGQKT 61 (256)
T ss_dssp CEEEEEECS------------------CHHHHHHHHHHHHHSSCCSEEEEECCCSCGG-GSCHHHHHTTTCEEEEECCSS
T ss_pred CEEEEEEcC------------------CcHHHHHHHHHHHHhcCCCEEEEEeeccchh-cCCHhHHhhcCCeEEECCCCc
Confidence 689999996 2778889999999999999999999976543 233445667899888764332
Q ss_pred ---e-EEEec
Q 017840 334 ---E-VEFNK 339 (365)
Q Consensus 334 ---~-i~fn~ 339 (365)
- |+++.
T Consensus 62 ~~G~ailsr~ 71 (256)
T 2jc4_A 62 YNGVAIVSRS 71 (256)
T ss_dssp SCCEEEEESS
T ss_pred ceEEEEEECC
Confidence 2 66664
No 11
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.63 E-value=4.6e-08 Score=88.72 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=47.2
Q ss_pred CceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChh-------------hHHHHHHhh
Q 017840 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQND-------------HFEEFFAPE 318 (365)
Q Consensus 252 ~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~-------------~~~~~~~~~ 318 (365)
++||||||||+... ..++..|...|.++|..++|||||||||+.. .|...+...
T Consensus 2 ~~l~v~t~Ni~~~~-------------~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~ 68 (266)
T 3teb_A 2 NAMKILTVNVHAWL-------------EENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLET 68 (266)
T ss_dssp -CEEEEEEECCTTC-------------STTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHH
T ss_pred CceEEEEEeccccc-------------CcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHH
Confidence 57999999997421 2357889999999999999999999999532 233335566
Q ss_pred hhcCC---ceEEE
Q 017840 319 LDKHG---YQALY 328 (365)
Q Consensus 319 L~~~g---Y~g~~ 328 (365)
|...| |..++
T Consensus 69 l~~~~~~~y~~~~ 81 (266)
T 3teb_A 69 LQKYTDTDYYLHW 81 (266)
T ss_dssp HTTTCCSCCEEEE
T ss_pred HHHhCCCCeEEEE
Confidence 77655 77553
No 12
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.63 E-value=2.1e-08 Score=95.94 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=47.4
Q ss_pred CCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhh-cCCce
Q 017840 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQ 325 (365)
Q Consensus 249 ~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~-~~gY~ 325 (365)
.+.++||||||||+...+. -.....|..|.++|..+|..++|||||||||+.....+.+...|. .++|.
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~--------~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~ 94 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTV--------LYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQ 94 (317)
T ss_dssp ---CCCCEEEEEEEECCTT--------TSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEE
T ss_pred CCCCceEEEEEecccCccc--------cCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcc
Confidence 4567899999999864322 112346999999999999999999999999975542232444454 45654
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.57 E-value=6.4e-08 Score=87.90 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=50.9
Q ss_pred eEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEeccCC
Q 017840 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (365)
Q Consensus 254 frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K~g 333 (365)
||||||||.. +..|.+.|.++|..++||||||||+..... .+....|...||..++..+.+
T Consensus 1 lrv~t~Nv~~------------------~~~~~~~i~~~i~~~~~Dii~LQE~~~~~~-~~~~~~l~~~gy~~~~~~~~~ 61 (268)
T 1ako_A 1 MKFVSFNING------------------LRARPHQLEAIVEKHQPDVIGLQETKVHDD-MFPLEEVAKLGYNVFYHGQKG 61 (268)
T ss_dssp CEEEEEECSC------------------GGGCHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHHTTCEEEEEEETT
T ss_pred CEEEEEehhH------------------HHHHHHHHHHHHHHcCCCEEEEEeccCChh-hCCHhHhccCCCcEEEeCCCC
Confidence 6899999962 234678899999999999999999975542 233445666799888765443
Q ss_pred e----EEEeccccc
Q 017840 334 E----VEFNKAAQS 343 (365)
Q Consensus 334 ~----i~fn~~~~~ 343 (365)
. |+++...++
T Consensus 62 ~~G~ailsr~~~~~ 75 (268)
T 1ako_A 62 HYGVALLTKETPIA 75 (268)
T ss_dssp EEEEEEEESSCCSE
T ss_pred cceEEEEEecCcce
Confidence 3 666654433
No 14
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.43 E-value=1.7e-07 Score=87.24 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=45.4
Q ss_pred CCCceEEEeeccccCcccCCCCCCCCCCccCCh--HHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhh-cCCce
Q 017840 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSW--AYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQ 325 (365)
Q Consensus 250 ~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w--~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~-~~gY~ 325 (365)
.++.||||||||+... ...+ + .| +.|.++|.++|..++|||||||||+..+..+.+...|. .++|.
T Consensus 7 ~~~~lrv~t~Ni~~~~---~~~~---~----~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~ 75 (301)
T 1zwx_A 7 YPGNFKITSHNVYLFS---RNIY---P----NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQ 75 (301)
T ss_dssp CCCSCEEEEEEEEECC---TTTS---T----TSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEE
T ss_pred CCCceEEEEEECccCC---cccc---C----CCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCcc
Confidence 4568999999998642 1111 1 35 78999999999999999999999975543222333443 35553
No 15
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.38 E-value=5.7e-07 Score=79.97 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=47.7
Q ss_pred CCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEec
Q 017840 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 330 (365)
Q Consensus 251 ~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~ 330 (365)
...+|||||||.. +....|+..|.+.|..++||||||||+..... . + +.+...||..+|..
T Consensus 5 ~~~lri~t~Nv~g----------------~~~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~-~-~-~~l~~~~y~~~~~~ 65 (238)
T 1vyb_A 5 NSHITILTLNING----------------LNSAIKRHRLASWIKSQDPSVCCIQETHLTCR-D-T-HRLKIKGWRKIYQA 65 (238)
T ss_dssp CCCEEEEEEECSC----------------CCSHHHHHHHHHHHHHHCCSEEEEECCCCCTT-S-G-GGCCCTTCCEEEEE
T ss_pred CCcceEEEEeccc----------------CCchhhHHHHHHHHHHcCCCEEEEecccCCCC-C-c-hhHhhCCCCeEEEc
Confidence 4569999999962 12346778999999999999999999964321 1 1 22444588876632
Q ss_pred c-----CCe-EEEecc
Q 017840 331 K-----TNE-VEFNKA 340 (365)
Q Consensus 331 K-----~g~-i~fn~~ 340 (365)
. .|- |+++..
T Consensus 66 ~~~~~~~Gvail~r~~ 81 (238)
T 1vyb_A 66 NGKQKKAGVAILVSDK 81 (238)
T ss_dssp CCSSSSCCEEEEECTT
T ss_pred cCCCCCceEEEEEeCC
Confidence 1 222 777654
No 16
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.37 E-value=4.9e-07 Score=81.81 Aligned_cols=67 Identities=16% Similarity=0.372 Sum_probs=45.0
Q ss_pred eEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEeccCC
Q 017840 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (365)
Q Consensus 254 frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K~g 333 (365)
||||||||.. +..|.+.|++.|..++||||||||+....- .+-...+...||..++..+.|
T Consensus 2 lrv~t~Nv~g------------------~~~~~~~i~~~i~~~~~Dii~lQE~~~~~~-~~~~~~~~~~gy~~~~~~~~~ 62 (257)
T 2voa_A 2 LKIATFNVNS------------------IRSRLHIVIPWLKENKPDILCMQETKVENR-KFPEADFHRIGYHVVFSGSKG 62 (257)
T ss_dssp EEEEEEECSC------------------GGGTHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHTTTCEEEEEEETT
T ss_pred eEEEEEecCC------------------hHHHHHHHHHHHhhcCCCEEEEEEeecchh-hcCHHHhhhCCCcEEEcCCCC
Confidence 7999999962 112356799999999999999999964321 111223456789877653333
Q ss_pred ---e-EEEec
Q 017840 334 ---E-VEFNK 339 (365)
Q Consensus 334 ---~-i~fn~ 339 (365)
- |+++.
T Consensus 63 ~~G~ailsr~ 72 (257)
T 2voa_A 63 RNGVAIASLE 72 (257)
T ss_dssp EEEEEEEESS
T ss_pred ccEEEEEEcc
Confidence 2 66665
No 17
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.25 E-value=8e-07 Score=82.65 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=38.7
Q ss_pred CCCCceEEEeeccccCcccCCCCCCCCCCccCCh--HHHHHHHHHHHhhcCCcEEEEeccChhh
Q 017840 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSW--AYRRQNLLREIIGYRADIVCLQEVQNDH 310 (365)
Q Consensus 249 ~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w--~~R~~~Il~eI~~~~aDIiCLQEV~~~~ 310 (365)
.....||||||||.... ...+ -.| +.|..+|...|...+|||||||||...+
T Consensus 5 ~~~~~lrv~t~Ni~~~~---~~~~-------~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~ 58 (306)
T 2ddr_A 5 TQNDTLKVMTHNVYMLS---TNLY-------PNWGQTERADLIGAADYIKNQDVVILNEVFDNS 58 (306)
T ss_dssp --CCEEEEEEEEEEECC---TTTC-------TTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHH
T ss_pred cCCCEEEEEEEECccCc---cccc-------CCCCHHHHHHHHHHHhhccCCCEEEEEeecCHH
Confidence 34568999999998642 1111 135 7889999888999999999999997654
No 18
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=98.23 E-value=1.3e-06 Score=80.55 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=50.6
Q ss_pred eEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhc--CCcEEEEeccChh---hHHHHHHhhhhc---CCce
Q 017840 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGY--RADIVCLQEVQND---HFEEFFAPELDK---HGYQ 325 (365)
Q Consensus 254 frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~--~aDIiCLQEV~~~---~~~~~~~~~L~~---~gY~ 325 (365)
||||||||+. +. + -.+|.+.+++.|... +|||||||||+.. .+.+ +...|.. .+|.
T Consensus 1 lrv~s~NI~~--~g--------~-----~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~-l~~~L~~~~~~~y~ 64 (260)
T 2a40_B 1 LKIAAFNIRT--FG--------E-----TKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGK-LLDYLNQDDPNTYH 64 (260)
T ss_dssp CEEEEEEEEE--ES--------H-----HHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHH-HHHHHTSSSTTSCE
T ss_pred CEEEEEehhh--hC--------C-----CccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHH-HHHHHHhccCCCcE
Confidence 6899999983 11 0 112445555555553 8999999999853 2444 4455642 3487
Q ss_pred EEEeccCC-----e---EEEecccccccccc
Q 017840 326 ALYKRKTN-----E---VEFNKAAQSLTDAI 348 (365)
Q Consensus 326 g~~~~K~g-----~---i~fn~~~~~l~e~~ 348 (365)
.++....| + |+|++.+++++++.
T Consensus 65 ~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~ 95 (260)
T 2a40_B 65 YVVSEPLGRNSYKERYLFLFRPNKVSVLDTY 95 (260)
T ss_dssp EEECCCBCSSSCCBEEEEEECTTTCEEEEEE
T ss_pred EEEcccCCCCCCcEEEEEEEcCceeEecCce
Confidence 77654322 2 89999999887653
No 19
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.19 E-value=2.2e-06 Score=77.29 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=44.7
Q ss_pred eEEEeeccccCcccCCCCCCCCCCccCChHHHHH-HHHHHHhhcCCcEEEEeccChhhHHHHHHhhh-hcCCceEEEec-
Q 017840 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGYQALYKR- 330 (365)
Q Consensus 254 frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~-~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L-~~~gY~g~~~~- 330 (365)
||||||||.. +..+.. .|.++|..++||||||||+....- + +...| ...||..+|..
T Consensus 2 l~v~t~Ni~~------------------~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~~~~~ 61 (259)
T 2jc5_A 2 LKIISANVNG------------------IRSAYKKGFYEYIAASGADIVCVQELKAQEA-D-LSADMKNPHGMHGHWHCA 61 (259)
T ss_dssp EEEEEEECSS------------------HHHHHHTTHHHHHHHTTCSEEEEECCCCCGG-G-CCHHHHSGGGCEEEEECC
T ss_pred cEEEEEeecc------------------HHHHHHhHHHHHHHhcCCCEEEEEEecchhh-c-cChhhccccCCeEEEecc
Confidence 7999999962 111222 499999999999999999975431 1 21223 35689887763
Q ss_pred -cC---Ce-EEEecccc
Q 017840 331 -KT---NE-VEFNKAAQ 342 (365)
Q Consensus 331 -K~---g~-i~fn~~~~ 342 (365)
+. |- |+++....
T Consensus 62 ~~~~~~G~ailsr~~~~ 78 (259)
T 2jc5_A 62 EKRGYSGVAVYSKRKPD 78 (259)
T ss_dssp SSTTCCCEEEEESSCCS
T ss_pred CCCCcceEEEEEecCce
Confidence 22 22 77666543
No 20
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.12 E-value=2.8e-06 Score=78.42 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=48.0
Q ss_pred CCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhh-cCCc-eE
Q 017840 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGY-QA 326 (365)
Q Consensus 249 ~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~-~~gY-~g 326 (365)
.....||||||||.... ...++ .|+++|..++||||||||+..... . +...|. ..|| ..
T Consensus 24 ~~~~~l~v~t~Ni~~~~----------------~~~~~-~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~ 84 (285)
T 2o3h_A 24 GKPATLKIASWNVDGLR----------------AWIKK-KGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSHQ 84 (285)
T ss_dssp SCBCCEEEEEEECSSHH----------------HHHHT-THHHHHHHHCCSEEEEECCCCCTT-S-CCGGGGGCGGGCEE
T ss_pred CCccceEEEEEecccCh----------------hhhhh-hHHHHHHhcCCCEEEEEEeecchh-h-ccHHHHhccCCcEE
Confidence 34567999999997211 11111 289999999999999999975421 1 111232 5688 55
Q ss_pred EEec---cC---Ce-EEEeccccccc
Q 017840 327 LYKR---KT---NE-VEFNKAAQSLT 345 (365)
Q Consensus 327 ~~~~---K~---g~-i~fn~~~~~l~ 345 (365)
++.. +. |- |+++...+++.
T Consensus 85 ~~~~~~~~~g~~Gvailsr~~~~~~~ 110 (285)
T 2o3h_A 85 YWSAPSDKEGYSGVGLLSRQCPLKVS 110 (285)
T ss_dssp EEECBC--CCSCCEEEEESSCCSEEE
T ss_pred EEecccCCcccceEEEEEccChHHee
Confidence 5544 22 33 77776655543
No 21
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.06 E-value=4e-06 Score=76.85 Aligned_cols=73 Identities=19% Similarity=0.350 Sum_probs=46.4
Q ss_pred ceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEecc-
Q 017840 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK- 331 (365)
Q Consensus 253 ~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K- 331 (365)
.+||+||||.. +....++ .|+++|..++||||||||+..... .+........||..++...
T Consensus 3 ~l~i~s~Nv~g----------------~~~~~~~-~l~~~i~~~~~DIv~LQEt~~~~~-~~~~~~~~~~gy~~~~~~~~ 64 (265)
T 3g91_A 3 VLKIISWNVNG----------------LRAVHRK-GFLKWFMEEKPDILCLQEIKAAPE-QLPRKLRHVEGYRSFFTPAE 64 (265)
T ss_dssp EEEEEEEECSC----------------HHHHHHH-THHHHHHHHCCSEEEEECCCSCGG-GSCHHHHCCTTCEEEEECBS
T ss_pred ccEEEEEEcCC----------------chhhhhh-hHHHHHHhcCCCEEEEEecccccc-ccChhhhcccCCcEEEccCC
Confidence 58999999962 1122222 589999999999999999964431 2222222367999877543
Q ss_pred -C---Ce-EEEeccccc
Q 017840 332 -T---NE-VEFNKAAQS 343 (365)
Q Consensus 332 -~---g~-i~fn~~~~~ 343 (365)
. |- |+++...++
T Consensus 65 ~~~~~Gvail~k~~~~~ 81 (265)
T 3g91_A 65 RKGYSGVAMYTKVPPSS 81 (265)
T ss_dssp STTSCCEEEEESSCCSE
T ss_pred CCCcCEEEEEEecChHH
Confidence 2 33 666654433
No 22
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.05 E-value=6.1e-06 Score=78.41 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=43.3
Q ss_pred CCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhh-hcCCc-eEE
Q 017840 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGY-QAL 327 (365)
Q Consensus 250 ~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L-~~~gY-~g~ 327 (365)
....||||||||.... .+ .+ ..|+++|..++||||||||+..... + +...| ...|| ..+
T Consensus 58 ~~~~lrv~t~Nv~g~~---------------~~-~~-~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~~ 118 (318)
T 1hd7_A 58 KPATLKICSWNVDGLR---------------AW-IK-KKGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSHQY 118 (318)
T ss_dssp CBCCEEEEEEECSSHH---------------HH-HH-TTHHHHHHHHCCSEEEEECCCCCC-------------CCCEEE
T ss_pred CCCceEEEEEecCcch---------------hh-hh-hhHHHHHHhhCCCEEEEEEccCchh-h-ccHHHHhcCCCceEE
Confidence 4557999999997211 01 11 1389999999999999999975421 1 21122 35688 555
Q ss_pred Eec---cC---Ce-EEEecccccc
Q 017840 328 YKR---KT---NE-VEFNKAAQSL 344 (365)
Q Consensus 328 ~~~---K~---g~-i~fn~~~~~l 344 (365)
+.. +. |- |+++...+++
T Consensus 119 ~~~~~~~~g~~Gvailsr~~~~~~ 142 (318)
T 1hd7_A 119 WSAPSDKEGYSGVGLLSRQCPLKV 142 (318)
T ss_dssp EECC-----CCCEEEEESSCCSEE
T ss_pred EecCCCCCccceEEEEEcCCceeE
Confidence 543 22 33 7777654443
No 23
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.95 E-value=1.2e-05 Score=72.80 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=46.3
Q ss_pred CCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhhcCCceEEEec
Q 017840 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 330 (365)
Q Consensus 251 ~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~ 330 (365)
...+|||||||... .-+...+++.|..++||||||||+....... . . ...||..++..
T Consensus 17 ~~~lri~s~Nv~~~------------------~~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~-~-~--~~~gy~~~~~~ 74 (245)
T 1wdu_A 17 GPPYRVLQANLQRK------------------KLATAELAIEAATRKAAIALIQEPYVGGAKS-M-K--GFRGVRVFQST 74 (245)
T ss_dssp -CCEEEEEEECTTC------------------HHHHHHHHHHHHHHTCSEEEEESCCC--------C--CCSSCEEEECC
T ss_pred Ccceeeeeeecccc------------------HHHHHHHHHHHhhcCCCEEEEEcccccCCcc-c-c--CCCcceEeccc
Confidence 44699999999721 1356789999999999999999997554322 1 1 13578655432
Q ss_pred c-----CCe-EEEeccccccc
Q 017840 331 K-----TNE-VEFNKAAQSLT 345 (365)
Q Consensus 331 K-----~g~-i~fn~~~~~l~ 345 (365)
+ .|. |++++.++.+.
T Consensus 75 ~~~~~~~GvaIl~~~~~~~~~ 95 (245)
T 1wdu_A 75 AQGDGTVKAAIAVFDHDLDVI 95 (245)
T ss_dssp CCTTCCCCEEEEECCSSCEEE
T ss_pred cccCCCCCeEEEEECCCcceE
Confidence 1 122 88876666553
No 24
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.92 E-value=7.1e-06 Score=83.60 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=50.0
Q ss_pred CCCceEEEeeccccCcccCCCCCCCCCCccCChHHHH-HHHHHHHhhcCCcEEEEeccChh--hHHHHHHhhhh-cCCce
Q 017840 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRR-QNLLREIIGYRADIVCLQEVQND--HFEEFFAPELD-KHGYQ 325 (365)
Q Consensus 250 ~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~-~~Il~eI~~~~aDIiCLQEV~~~--~~~~~~~~~L~-~~gY~ 325 (365)
....||||||||..- ..|..|. +.|.+.|..++||||||||+... ++.. ...|. ..||.
T Consensus 146 ~~~~LKI~TwNVnGl---------------~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~--~~~la~~~GY~ 208 (467)
T 2j63_A 146 PSRMYKFITWNVAGL---------------RGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADA--NATLGVVDGYS 208 (467)
T ss_dssp TTTEEEEEEEECSCH---------------HHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHH--HHTSSCCTTEE
T ss_pred CCCCeEEEEEEcCCC---------------cccccccHHHHHHHHHHcCCCEEEEEecccchhccch--HHHHhhcCCce
Confidence 346799999999521 1233332 67999999999999999999642 3321 12244 56898
Q ss_pred EEEec---cCC---e-EEEecccc
Q 017840 326 ALYKR---KTN---E-VEFNKAAQ 342 (365)
Q Consensus 326 g~~~~---K~g---~-i~fn~~~~ 342 (365)
.+|.. +.| - |+++...+
T Consensus 209 ~~~~~~~~~~g~~GVAIlsR~pi~ 232 (467)
T 2j63_A 209 FVDHPCAFKRGYSGTRTYMKNSTT 232 (467)
T ss_dssp EEEECCSSSTTSCCEEEEEECCCC
T ss_pred EEEecccCCCCcceEEEEEeCCcc
Confidence 77753 222 2 88887653
No 25
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=97.41 E-value=0.0001 Score=69.74 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=50.1
Q ss_pred CCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcE--EEEeccChhh--------HHHHHHhhhh
Q 017840 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI--VCLQEVQNDH--------FEEFFAPELD 320 (365)
Q Consensus 251 ~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDI--iCLQEV~~~~--------~~~~~~~~L~ 320 (365)
.-+|+||||||.... . +....+|-. .|..++||| |||||++... +.+.+...|.
T Consensus 6 ~~~i~V~T~Nv~~~~---~------~~~l~~wl~-------~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~ 69 (282)
T 2imq_X 6 QLSVHTVSWNSGHER---A------PTNLEELLG-------LNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLT 69 (282)
T ss_dssp EEEEEEEEEEEETCC---C------CSCCHHHHT-------CTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCCc---C------chhHHHHhc-------ccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcC
Confidence 346999999997432 1 122223433 245689996 5999997542 3445667777
Q ss_pred cCCceEEEec--c-CCe---EEEecccccccc
Q 017840 321 KHGYQALYKR--K-TNE---VEFNKAAQSLTD 346 (365)
Q Consensus 321 ~~gY~g~~~~--K-~g~---i~fn~~~~~l~e 346 (365)
.++|..+... + .|. ||+++..+..++
T Consensus 70 ~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~ 101 (282)
T 2imq_X 70 SKGYTKLKNTITETMGLTVYCLEKHLDQNTLK 101 (282)
T ss_dssp HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCC
T ss_pred CCceEEEEeccCceeEEEEEEEEccccCccce
Confidence 7789888652 2 233 777877665544
No 26
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum}
Probab=97.18 E-value=8e-06 Score=80.99 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=74.4
Q ss_pred CccccccCCCcCCCcccc-----cccCC------------Ccccccc-CCCCccccCcc------cccCCC-cceeEecc
Q 017840 122 EEEELFGRFNSTGSGVIN-----ASLSG------------SASNSSL-TNGSTPLYPAA------VTRSGG-ETWFEVGR 176 (365)
Q Consensus 122 ~~~~~f~~f~~tg~~rp~-----r~vpg------------~~se~~~-~~~~i~~~~~~------~~~~~g-e~w~~vg~ 176 (365)
..++||++|+|||+|||. |.||. |.+|+.. +.+.+.|++++ +|++++ +.+..+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~vp~~i~~p~y~~~~~~~~~~~~~~~~~~~IKs~~EIe~mR~A~~ia~~al~~~~~ 128 (368)
T 3s6b_A 49 DHLKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRKTLDYAHT 128 (368)
T ss_dssp TTGGGGTTCCCSSSCCCCCCCCCCCCCTTSCCCTTTTTSCCHHHHSCCCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCcccccccCCCCCCCcCCCCCccccCCCChhhhhccccCCceeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999996 78882 3344433 34567778876 677777 77888888
Q ss_pred ceecCCChhccCcEEEEEEEeecCCCCCCCC---Ccceeeecc--ccCCCCCCCCc
Q 017840 177 SKTYTPSADDIGHVLKFECVVVDAETKLPVG---HPNTLLTSR--VIPAPSPSPRR 227 (365)
Q Consensus 177 ~~~YtPt~eDIG~llklecl~~dg~~~~plg---~~~sv~Ts~--Vip~P~P~~R~ 227 (365)
....+.|+.||...++-.+....+ ++++++ .+..++++. +++|..|..|.
T Consensus 129 ~ikpGvTE~El~~~~~~~~~~~Ga-~ps~l~y~~Fp~iv~sg~N~~i~H~~p~~r~ 183 (368)
T 3s6b_A 129 LVSPGVTTDEIDRKVHEFIIKNNA-YPSTLNYYKFPKSCCTSVNEIVCHGIPDYRP 183 (368)
T ss_dssp TCCTTCBHHHHHHHHHHHHHHTTC-EETTTTGGGCCSSEEEEETTEEECCCCCSCB
T ss_pred HccCCCCHHHHHHHHHHHHHHcCC-ccccccccCCCCeEEEcCccccccCCCCCcc
Confidence 888999999999887666544333 445543 366788765 66777765443
No 27
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=96.94 E-value=0.00052 Score=63.14 Aligned_cols=37 Identities=19% Similarity=0.062 Sum_probs=30.6
Q ss_pred ceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccC
Q 017840 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQ 307 (365)
Q Consensus 253 ~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~ 307 (365)
.+||+||||-. -.-|...+++.|...++|||||||..
T Consensus 7 ~mki~s~Nvn~------------------~r~~~~~l~~~l~~~~~DIl~LQEt~ 43 (240)
T 2ei9_A 7 RLRIGQINLGG------------------AEDATRELPSIARDLGLDIVLVQEQY 43 (240)
T ss_dssp EEEEEEEECTT------------------CHHHHHTHHHHHHHHTCSEEEEESCC
T ss_pred cceEEEEecCc------------------cHHHHHHHHHHHHHcCCCEEEeecce
Confidence 48999999952 12356679999999999999999994
No 28
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=96.66 E-value=0.0014 Score=62.09 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=30.5
Q ss_pred ceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhh-cCCcEEEEeccCh
Q 017840 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG-YRADIVCLQEVQN 308 (365)
Q Consensus 253 ~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~-~~aDIiCLQEV~~ 308 (365)
.|+||||||.... ....-+|+. .|++.|.+ .++||+.|||++.
T Consensus 4 ~~kv~TwNi~g~~----------~~~~~k~~~---~i~~~i~~~~~~DIlaLQEa~~ 47 (261)
T 1sr4_B 4 DFKVATWNLQGSS----------AVNESKWNI---NVRQLLSGEQGADILMVQEAGS 47 (261)
T ss_dssp GSCEEEEECCCCS----------SSSHHHHHH---HHHHHHCSTTCCSEEEEESCCS
T ss_pred ccEEEEEEcCCCC----------CCChhhhhh---HHHHHHcCCCCCCEEEEecCCC
Confidence 5899999998421 111113333 68888888 7899999999975
No 29
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Probab=96.50 E-value=3.9e-05 Score=74.79 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=65.1
Q ss_pred CccccccCCCcCCCccc-c-----cccCC----Cc----------ccccc-CCCCccccCcc------cccCCC-cceeE
Q 017840 122 EEEELFGRFNSTGSGVI-N-----ASLSG----SA----------SNSSL-TNGSTPLYPAA------VTRSGG-ETWFE 173 (365)
Q Consensus 122 ~~~~~f~~f~~tg~~rp-~-----r~vpg----~~----------se~~~-~~~~i~~~~~~------~~~~~g-e~w~~ 173 (365)
.++++|++|.|||.+|| . |.||. |. +|+.+ +...+.+++++ ++++++ +.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~~~iKs~~EI~~mR~A~~ia~~al~~ 97 (329)
T 2b3h_A 18 GSHMLEDPYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDV 97 (329)
T ss_dssp --------CCCSSSCCCCCCCCCCCCCCTTSCCCGGGGSTTCCCHHHHHTTTCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCcccCCccCCCCccCCccCCCcccCChhhcccccCCCchhhhcccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 3 78883 21 11222 12345567765 677776 77777
Q ss_pred eccceecCCChhccCcEEEEEEEeecCCCCCCCC---Ccceeeecc--ccCCCCCCCCc
Q 017840 174 VGRSKTYTPSADDIGHVLKFECVVVDAETKLPVG---HPNTLLTSR--VIPAPSPSPRR 227 (365)
Q Consensus 174 vg~~~~YtPt~eDIG~llklecl~~dg~~~~plg---~~~sv~Ts~--Vip~P~P~~R~ 227 (365)
+......+.|+.||...++-.+... |.++.+++ .+..++++. +++|..|..|.
T Consensus 98 ~~~~i~pGvte~el~~~~~~~~~~~-G~~~~~~~y~~fp~iv~sg~n~~~~H~~p~~~~ 155 (329)
T 2b3h_A 98 AAGMIKPGVTTEEIDHAVHLACIAR-NCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRP 155 (329)
T ss_dssp HHHTCCTTCBHHHHHHHHHHHHHHT-TCEETTTTGGGCCSSSEEEETTEEECCCCCSCB
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHHc-CCccccccccCCCCeEEecCCCCcCCCCCCCcC
Confidence 7788889999999999887766543 33555554 467788765 66787765443
No 30
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei}
Probab=96.29 E-value=5.9e-05 Score=73.41 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=65.8
Q ss_pred cccCCCcCCCcccc-----cccCC--------------CccccccCCCCcc----------ccCcc------cccCCC-c
Q 017840 126 LFGRFNSTGSGVIN-----ASLSG--------------SASNSSLTNGSTP----------LYPAA------VTRSGG-E 169 (365)
Q Consensus 126 ~f~~f~~tg~~rp~-----r~vpg--------------~~se~~~~~~~i~----------~~~~~------~~~~~g-e 169 (365)
.|++|+|||+|||. |.||. |.++...+.+.|. |.+++ +||+++ +
T Consensus 2 ~~~~~~~~g~~~p~~~sp~~~vP~~i~~p~y~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~VKs~~EI~~mR~A~~i~~~ 81 (337)
T 4fuk_A 2 AMKTFDFTGPLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKKTAEIQRIKTVCQLSRE 81 (337)
T ss_dssp CEECCCCCSSCCCCCCCCCCCCCTTSCCCTTSSSTTCCCHHHHHHTTCCCCCCCCTTTTCTTC--CHHHHHHHHHHHHHH
T ss_pred CccCcceecccccccCCCCCCCCCCCCCCCcccCCCCCCccccccccCccccccchhhcccCCCHHHHHHHHHHHHHHHH
Confidence 47899999999996 78882 1122222223332 33443 678887 8
Q ss_pred ceeEeccceecCCChhccCcEEEEEEEeecCCCCCCCC---Ccceeeecc--ccCCCCCCCCce
Q 017840 170 TWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVG---HPNTLLTSR--VIPAPSPSPRRL 228 (365)
Q Consensus 170 ~w~~vg~~~~YtPt~eDIG~llklecl~~dg~~~~plg---~~~sv~Ts~--Vip~P~P~~R~~ 228 (365)
.+..+......+.|+.||...++-.++...+ ..++.+ .+..++++. +++|..|..|.+
T Consensus 82 a~~~~~~~ikpG~te~el~~~~~~~~~~~g~-~~~~~~~~~fp~iv~~g~n~~~~H~~~~~~~l 144 (337)
T 4fuk_A 82 VLDIATAAAKPGITTDELDRIVHEATVERNM-YPSPLNYYGFPKSVCTSVNEVICHGIPDSREL 144 (337)
T ss_dssp HHHHHHHHCCTTCBHHHHHHHHHHHHHHTTC-EETTTTGGGCCSSSEEEETTEEECCCCCSCBC
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHcCC-CccCCCCCCcCceeeccccccccCCCCCCccc
Confidence 8888999999999999998766555544333 333433 367778765 567777665543
No 31
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=95.71 E-value=0.0035 Score=59.27 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcC-CcEEEEeccC
Q 017840 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR-ADIVCLQEVQ 307 (365)
Q Consensus 249 ~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~-aDIiCLQEV~ 307 (365)
.....|+||||||.....+ ..-+|. .-|.+.|.+++ +||+.|||++
T Consensus 11 ~~~~~~kV~TwNiqgs~~~----------teskw~---~~v~~lI~~~~~~DIvaLQEag 57 (262)
T 2f1n_A 11 TDLTDFRVATWNLQGASAT----------TESKWN---INVRQLISGENAVDILAVQEAG 57 (262)
T ss_dssp CCGGGCCEEEEEEEECTTS----------CHHHHH---THHHHHHSSTTCCSEEEEEEEC
T ss_pred cccceeEEEEEEcCCCCCC----------Cccccc---ccHHHHHccCCCCCEEEEeecC
Confidence 3456799999999753211 122453 33556888888 9999999997
No 32
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=95.14 E-value=0.012 Score=43.11 Aligned_cols=38 Identities=24% Similarity=0.647 Sum_probs=30.6
Q ss_pred ccccCCCCcccccccchhhhcCCCCCcceecChhhhhHhHHHHHHh
Q 017840 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (365)
Q Consensus 63 ~~C~~~c~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~ 108 (365)
..| ..|++.+.++|..|.. .+||+.+|=+.+|+.||..
T Consensus 14 ~~C-~~C~~~~~~~Cs~C~~-------v~YCs~~CQ~~dW~~Hk~~ 51 (60)
T 2od1_A 14 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 51 (60)
T ss_dssp SCC-TTTSSCCCEECTTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred Ccc-ccCCCcccccCCCCCC-------eeecCHHHHHHHHHHHhHH
Confidence 446 6788888888987753 6799999999999987754
No 33
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=95.06 E-value=0.015 Score=42.65 Aligned_cols=38 Identities=24% Similarity=0.647 Sum_probs=30.6
Q ss_pred ccccCCCCcccccccchhhhcCCCCCcceecChhhhhHhHHHHHHh
Q 017840 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (365)
Q Consensus 63 ~~C~~~c~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~ 108 (365)
..| ..|++.+.++|..|.. .+||+.+|=+.+|+.||..
T Consensus 16 ~~C-~~C~~~~~~~Cs~C~~-------v~YCs~~CQ~~~W~~Hk~~ 53 (60)
T 2dj8_A 16 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 53 (60)
T ss_dssp CCC-SSSCSCCCEECTTTSC-------CEESSHHHHHHTHHHHTTT
T ss_pred ccc-ccCCCCCcccCCCCCC-------EeeeCHHHHHHHHHHHHHH
Confidence 346 6788888889988753 6799999999999987653
No 34
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=94.97 E-value=0.011 Score=41.85 Aligned_cols=39 Identities=31% Similarity=0.705 Sum_probs=30.5
Q ss_pred cccccCCCCcccccccchhhhcCCCCCcceecChhhhhHhHHHHHHh
Q 017840 62 VAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (365)
Q Consensus 62 ~~~C~~~c~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~ 108 (365)
...| ..|++.+.++|..|.. .+|||.+|-+..|+.||..
T Consensus 9 ~~~C-~~C~~~~~~~C~~C~~-------~~YCs~~CQ~~~W~~Hk~~ 47 (52)
T 2jw6_A 9 EQSC-VNCGREAMSECTGCHK-------VNYCSTFCQRKDWKDHQHI 47 (52)
T ss_dssp --CC-SSSSSSCSEECTTTCS-------SEESSHHHHHHHTTTGGGT
T ss_pred CCcC-CCCCCCCcCcCCCCCC-------EeecCHHHHHHHHHHHCHH
Confidence 3457 7888888889988753 6799999999999987653
No 35
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=94.78 E-value=0.015 Score=43.06 Aligned_cols=37 Identities=24% Similarity=0.664 Sum_probs=30.4
Q ss_pred cccCCCCcccccccchhhhcCCCCCcceecChhhhhHhHHHHHHh
Q 017840 64 VCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (365)
Q Consensus 64 ~C~~~c~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~ 108 (365)
.| ..|++.+.++|..|.. .+|||.+|=+.+|+.||..
T Consensus 19 ~C-~~C~~~~~~~Cs~C~~-------~~YCs~~CQ~~~W~~Hk~~ 55 (64)
T 2odd_A 19 SC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 55 (64)
T ss_dssp SC-TTTSSCCCEEETTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred cC-ccccCCCcccCCCCCC-------hhhCCHHHHHHHHHHHhHH
Confidence 46 6788888889998753 6799999999999988764
No 36
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=94.60 E-value=0.022 Score=43.25 Aligned_cols=40 Identities=23% Similarity=0.558 Sum_probs=32.4
Q ss_pred ccccCCCCcccccccchhhhcCCCCCcceecChhhhhHhHHHHHHhhh
Q 017840 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (365)
Q Consensus 63 ~~C~~~c~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~ 110 (365)
..| ..|++.+.++|-.|.. .+||+.+|=+..|+.||..=.
T Consensus 16 ~~C-~~C~~~~~~~Cs~Ck~-------v~YCs~eCQ~~~W~~HK~~C~ 55 (70)
T 2d8q_A 16 PRC-AYCSAEASKRCSRCQN-------EWYCCRECQVKHWEKHGKTCV 55 (70)
T ss_dssp CBC-SSSCCBCCCBCTTTSC-------CBCSCHHHHHHTHHHHHHHCC
T ss_pred CcC-CCCCCcccccCCCCCC-------EeeCCHHHhHHHHHHHHHHHH
Confidence 356 7788888888988763 678999999999999887643
No 37
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.64 E-value=0.16 Score=50.47 Aligned_cols=38 Identities=29% Similarity=0.586 Sum_probs=28.9
Q ss_pred ccccCCCCcc--cccccchhhhcCCCCCcceecChhhhhHhHHHHHHh
Q 017840 63 AVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (365)
Q Consensus 63 ~~C~~~c~~~--a~lqCp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~ 108 (365)
..| .+|.+. +...|..|.. .+|||.+|.+.+|+.||..
T Consensus 48 ~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~e 87 (429)
T 3qwp_A 48 VVC-DRCLLGKEKLMRCSQCRV-------AKYCSAKCQKKAWPDHKRE 87 (429)
T ss_dssp TBC-TTTCCBCSSCEECTTTSC-------CEESSHHHHHHTHHHHHHH
T ss_pred CcC-cCCCCcCCCCCcCCCCCC-------cccCChhhhhhhhhhhHHh
Confidence 456 677763 4577888753 5799999999999988754
No 38
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.46 E-value=0.16 Score=50.74 Aligned_cols=39 Identities=18% Similarity=0.534 Sum_probs=29.5
Q ss_pred ccccCCCCcc--cccccchhhhcCCCCCcceecChhhhhHhHHHHHHhh
Q 017840 63 AVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH 109 (365)
Q Consensus 63 ~~C~~~c~~~--a~lqCp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H 109 (365)
..| .+|.+. +.+.|..|.. .+|||.+|.+.+|+.||..=
T Consensus 50 ~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~eC 90 (433)
T 3qww_A 50 HHC-ECCFARKEGLSKCGRCKQ-------AFYCDVECQKEDWPLHKLEC 90 (433)
T ss_dssp TBC-TTTCCBCSSCEECTTTSC-------CEESSHHHHHHHHHHHTTTH
T ss_pred CcC-CcccccCCCCCCCCCCcc-------eeecChhhhhhhhhHHHHHH
Confidence 456 677764 4578888862 67999999999999887543
No 39
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=86.29 E-value=0.41 Score=48.59 Aligned_cols=39 Identities=26% Similarity=0.495 Sum_probs=28.8
Q ss_pred ccccCCCCcc--cccccchhhhcCCCCCcceecChhhhhHhHHHHHHhh
Q 017840 63 AVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH 109 (365)
Q Consensus 63 ~~C~~~c~~~--a~lqCp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H 109 (365)
..| .+|.+. +.+.|..|.. .+|||.+|.+.+|+.||..=
T Consensus 50 ~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~eC 90 (490)
T 3n71_A 50 FVC-HTCFKRQEKLHRCGQCKF-------AHYCDRTCQKDAWLNHKNEC 90 (490)
T ss_dssp TBC-TTTCCBCSCCEECTTTSC-------CEESSHHHHHHHHHHHHHHH
T ss_pred CcC-CCCCCCCCCCCCCCCCCC-------cCcCCHHHhhhhhhHHHHHh
Confidence 456 667553 3477888753 57999999999999887544
No 40
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=86.00 E-value=1.9 Score=41.96 Aligned_cols=37 Identities=30% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHh---hcCCcE--EEEecc
Q 017840 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREII---GYRADI--VCLQEV 306 (365)
Q Consensus 251 ~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~---~~~aDI--iCLQEV 306 (365)
.-++.|+||||-... |+.. |.+.|. ...||| |||||+
T Consensus 24 ~~~i~v~TwNv~g~~----------~~~~---------l~~~L~~~~~~~~DI~viglQEi 65 (347)
T 1i9z_A 24 NVKIFVASYNLNGCS----------ATTK---------LENWLFPENTPLADIYVVGFQEI 65 (347)
T ss_dssp EEEEEEEEEECTTCC----------CCSC---------CHHHHSCSSSCCCSEEEEEEECS
T ss_pred CcEEEEEeEecCCCC----------Cchh---------HHHHhccccCCCCCEEEEEeEEe
Confidence 346999999996432 1111 233343 378999 999998
No 41
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=84.75 E-value=1.1 Score=43.87 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=32.8
Q ss_pred CceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcE--EEEeccChh--hHHHHHHhhhhcCCceEE
Q 017840 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI--VCLQEVQND--HFEEFFAPELDKHGYQAL 327 (365)
Q Consensus 252 ~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDI--iCLQEV~~~--~~~~~~~~~L~~~gY~g~ 327 (365)
-++.|+||||=...- .|..-.+| +...+....||| |+|||+... .+.+.+...|. .+|.-+
T Consensus 26 l~i~v~TwNv~g~~~--------~~~~L~~~------l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~-~~Y~~v 90 (357)
T 2xsw_A 26 VALFVATWNMQGQKE--------LPPSLDEF------LLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLG-PHYVLL 90 (357)
T ss_dssp EEEEEEEEECTTCSS--------CCSCCHHH------HSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHC-TTEEEE
T ss_pred ceEEEEEEecCCCCC--------CcccHHHH------hccccccCCCCEEEEEeeeccchHHHHHHHHHHHhC-Ccccch
Confidence 358899999964320 01111122 112234568997 899999743 34444444443 245433
No 42
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=56.86 E-value=25 Score=33.62 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=10.4
Q ss_pred cCCc--EEEEeccC
Q 017840 296 YRAD--IVCLQEVQ 307 (365)
Q Consensus 296 ~~aD--IiCLQEV~ 307 (365)
..|| +|||||++
T Consensus 35 ~~pDI~viGlQE~~ 48 (313)
T 3mtc_A 35 QAPDVYCVGFQELD 48 (313)
T ss_dssp CCCSEEEEEEECSC
T ss_pred CCCCeEEEEEEecc
Confidence 6799 79999995
No 43
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=50.91 E-value=51 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=21.6
Q ss_pred cCCcEE--EEeccCh--hhHHHHHHhhhhc---CCceEEEec
Q 017840 296 YRADIV--CLQEVQN--DHFEEFFAPELDK---HGYQALYKR 330 (365)
Q Consensus 296 ~~aDIi--CLQEV~~--~~~~~~~~~~L~~---~gY~g~~~~ 330 (365)
..+||+ +|||+.. +.+.+.+...|.. ..|.-+...
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~ 87 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQ 87 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEE
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEee
Confidence 457966 9999963 3444555555653 467665443
No 44
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=49.71 E-value=9 Score=28.03 Aligned_cols=30 Identities=23% Similarity=0.575 Sum_probs=21.6
Q ss_pred cccccCCCC----cccccccchhhhcCCCCCcceecChhhhhH
Q 017840 62 VAVCSVHPS----EQATLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (365)
Q Consensus 62 ~~~C~~~c~----~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~ 100 (365)
...| .-|. +.++-.||.|. .-|||-.|||.
T Consensus 11 ~~~C-~vC~~~~~~~akY~CPrC~--------~rYCSl~C~k~ 44 (59)
T 1x4s_A 11 AGPC-GFCPAGEVQPARYTCPRCN--------APYCSLRCYRT 44 (59)
T ss_dssp CEEE-CSSCTTCCEEECEECTTTC--------CEESSHHHHHH
T ss_pred CCcC-cCCCCCcCCCccccCcCCC--------CCccChHHHHH
Confidence 3456 4565 46789999773 44999999993
No 45
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=45.57 E-value=13 Score=33.80 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=22.2
Q ss_pred EeccceecCCChhccCcEEEEEEEeecC
Q 017840 173 EVGRSKTYTPSADDIGHVLKFECVVVDA 200 (365)
Q Consensus 173 ~vg~~~~YtPt~eDIG~llklecl~~dg 200 (365)
.=++-..|.|++.|+|++|+.+|++ +|
T Consensus 60 sGAtk~~YAPeP~DVGrlLqadi~~-~G 86 (230)
T 4dix_A 60 SGATKSVYAPEPFDVGRVLHADIIY-DG 86 (230)
T ss_dssp TTCCSSEECCCGGGBTSEEEEEEEE-TT
T ss_pred eccccccccCCccccccEEEEEEec-CC
Confidence 3345677999999999999999986 44
No 46
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.76 E-value=14 Score=26.68 Aligned_cols=27 Identities=33% Similarity=0.696 Sum_probs=21.1
Q ss_pred ccCCCCcccccccchhhhcCCCCCcceecChhhhhH
Q 017840 65 CSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (365)
Q Consensus 65 C~~~c~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~ 100 (365)
| .-|+..++-.||.|. ..|||-.|||.
T Consensus 15 C-~vC~~~~kY~CPrC~--------~~yCSl~C~k~ 41 (56)
T 2yqq_A 15 C-VICLEKPKYRCPACR--------VPYCSVVCFRK 41 (56)
T ss_dssp C-TTTCSCCSEECTTTC--------CEESSHHHHHH
T ss_pred c-CcCcCCCeeeCCCCC--------CCeeCHHHHHH
Confidence 5 456778889999874 55999999875
No 47
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=35.58 E-value=12 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=18.8
Q ss_pred ccccchhhhcCC---CCCcceecChhhhhHh
Q 017840 74 TLQCLGCVKAKI---PVAKSYHCSPKCFSDA 101 (365)
Q Consensus 74 ~lqCp~C~k~~~---~~~~s~fCsq~CFk~~ 101 (365)
+..||+|.|.-. ......|||+-|=.-.
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iD 39 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLID 39 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhh
Confidence 467888887632 1235679999996544
No 48
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=22.80 E-value=30 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.0
Q ss_pred ccccchhhhcCCCC----CcceecChhhhhHh
Q 017840 74 TLQCLGCVKAKIPV----AKSYHCSPKCFSDA 101 (365)
Q Consensus 74 ~lqCp~C~k~~~~~----~~s~fCsq~CFk~~ 101 (365)
.+.|-.|-+.|... ...-|||-.|=|+.
T Consensus 6 ~~~CE~CG~~g~~~~F~~ksKRFCS~~Carry 37 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAFFSKTKRFCSVSCSRSY 37 (43)
T ss_dssp EEECTTTCCEEETTTSCTTTSSSSSHHHHHHH
T ss_pred eehhhhhcCcchhhhhccCCcceechhhhCcc
Confidence 47788888877641 01238999997764
Done!