Your job contains 1 sequence.
>017842
MSSSTASVLKPLSSMADSTSLLSPPSIFARNPYFSIHPRPRPIKLHLSDSSLSSKGFSFK
LKKTTHFSSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQGADETEGNL
SDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLF
EKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA
EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVF
SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ
RRSSF
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017842
(365 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 599 2.9e-72 2
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 647 5.4e-67 2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 267 1.2e-37 2
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 320 3.5e-36 2
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 320 9.2e-36 2
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 259 8.4e-28 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 235 2.4e-23 2
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 215 7.5e-22 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 218 2.1e-21 2
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 210 7.2e-20 2
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 228 5.1e-19 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 197 6.4e-19 2
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 227 6.5e-19 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 187 7.1e-19 2
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 225 1.1e-18 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 185 1.3e-18 2
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 1.7e-18 2
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 208 3.9e-18 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 208 3.9e-18 2
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 181 4.1e-18 2
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 216 9.5e-18 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 217 1.3e-17 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 221 1.9e-17 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 212 2.5e-17 1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 177 2.7e-17 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 211 3.2e-17 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 176 7.3e-17 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 200 9.2e-17 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 212 2.4e-16 2
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 184 5.0e-16 2
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 198 7.7e-16 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 205 9.7e-16 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 205 1.1e-15 2
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 191 1.3e-15 2
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 208 1.5e-15 2
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 185 1.6e-15 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 213 2.0e-15 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 202 2.2e-15 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 194 2.6e-15 2
UNIPROTKB|F1LUM4 - symbol:F1LUM4 "Uncharacterized protein... 174 2.9e-15 2
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein... 178 3.8e-15 2
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 192 3.9e-15 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 185 3.9e-15 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 211 4.1e-15 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 4.3e-15 2
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 4.7e-15 2
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 4.8e-15 2
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 191 5.1e-15 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 191 5.1e-15 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 168 5.1e-15 2
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 184 7.2e-15 2
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 7.2e-15 2
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 7.2e-15 2
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 184 7.2e-15 2
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 7.2e-15 2
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 184 7.2e-15 2
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 184 7.2e-15 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 184 7.6e-15 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 204 8.5e-15 2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 189 8.7e-15 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 9.4e-15 2
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 187 9.7e-15 2
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 191 1.0e-14 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 203 1.0e-14 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 208 1.1e-14 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 188 1.2e-14 1
DICTYBASE|DDB_G0292472 - symbol:DDB_G0292472 species:4468... 207 1.2e-14 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 185 1.3e-14 2
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 197 1.4e-14 2
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 206 1.6e-14 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 207 1.6e-14 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 184 1.7e-14 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 192 1.7e-14 2
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 185 1.8e-14 2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 200 1.9e-14 2
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 187 1.9e-14 2
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 181 1.9e-14 2
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 181 1.9e-14 2
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 186 2.0e-14 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 186 2.0e-14 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 186 2.0e-14 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 186 2.0e-14 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 186 2.0e-14 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 186 2.0e-14 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 186 2.0e-14 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 186 2.0e-14 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 186 2.0e-14 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 186 2.0e-14 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 186 2.0e-14 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 186 2.0e-14 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 186 2.0e-14 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 186 2.0e-14 1
UNIPROTKB|F1M3H8 - symbol:F1M3H8 "Uncharacterized protein... 186 2.0e-14 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 184 2.1e-14 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 203 2.2e-14 2
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 184 2.2e-14 2
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 184 2.2e-14 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 184 2.4e-14 2
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 184 2.4e-14 2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 184 2.4e-14 2
WARNING: Descriptions of 1248 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 599 (215.9 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 113/151 (74%), Positives = 137/151 (90%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V + +VIYNR+TD+SRGFGFVTMSTVEEAEKAVE F+ ++++GR LTVN+AAPRG++PER
Sbjct: 139 VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPER 198
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
PRV++ FRIYVGNLPW+VD+ RLE++FSEHGKVV+ARVV DRETGRSRGFGFV MS+E
Sbjct: 199 QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 258
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
E+N AIAALDGQNL+GRAI+VNVAE+R RR
Sbjct: 259 NEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 173 (66.0 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VGNLP++VD+ L +F + G V + V+Y+R+T +SRGFGFVTMS+ E A+
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 341 LDGQNLDGRAIRVNVAEDRQRR 362
+ ++GR + VN A R R
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSR 195
Score = 150 (57.9 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 36/75 (48%), Positives = 44/75 (58%)
Query: 121 SDWGEPE-GEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAML 179
S+W E E GED + G +AKLFVGNLPYDVDS+ LAML
Sbjct: 74 SNWAEEEEGEDGSI-GGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAML 132
Query: 180 FEKAGTVEIAEVKFH 194
FE+AGTVEI+EV ++
Sbjct: 133 FEQAGTVEISEVIYN 147
Score = 56 (24.8 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 74 VAQTSDWADQEEDKDNT 90
V+QTS+WA++EE +D +
Sbjct: 70 VSQTSNWAEEEEGEDGS 86
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 647 (232.8 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 139/249 (55%), Positives = 167/249 (67%)
Query: 121 SDWGEPEGEDTV-VEAGERQXXXXXXXXXXXXXXXXXXXDAKL---FVGNLPYDVDSEKL 176
SDW E GE +V VE E D G++ SE+
Sbjct: 82 SDWAEEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSER- 140
Query: 177 AMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236
A E + ++ + +Q M V + +VIYNRETD+SRGFGFVTMS+
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARL 296
V+EAE AVE F+RYD++GRLLTVNKAAPRG++PERAPRV+EP FR+YVGNLPW+VDN RL
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 297 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356
EQ+FSEHGKVV ARVVYDRETGRSRGFGFVTMS ELN+AI+ALDGQNL+GRAIRVNVA
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Query: 357 EDRQRRSSF 365
E+R R +
Sbjct: 321 EERPPRRGY 329
Score = 160 (61.4 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 46/121 (38%), Positives = 60/121 (49%)
Query: 74 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVV 133
VAQTSDWA EE + + D +EG++S+ E EG+ +
Sbjct: 78 VAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEG 135
Query: 134 EAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKF 193
ER +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEV +
Sbjct: 136 AVSER------------AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIY 183
Query: 194 H 194
+
Sbjct: 184 N 184
Score = 52 (23.4 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 2 SSSTASVLKPLSSMADSTS--LLSPPSI 27
SS S LKPL+ MADS+S + S PSI
Sbjct: 3 SSIVTSSLKPLA-MADSSSSTIFSHPSI 29
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 267 (99.0 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 52/87 (59%), Positives = 65/87 (74%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G R+YVGNL W VD+ LE +FSE GKVV ARV+YDR++GRS+GFGFVT S E+ +AI
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRSSF 365
+LDG +LDGR IRV+ AE R R +
Sbjct: 263 KSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 42/87 (48%), Positives = 56/87 (64%)
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
F +++VGNLP+ VD+A+L Q+F G V V+YD+ TGRSRGFGFVTMSS +E+
Sbjct: 87 FSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVE 146
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRR 362
A +G LDGR +RVN +R
Sbjct: 147 AAAQQFNGYELDGRPLRVNAGPPPPKR 173
Score = 153 (58.9 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE- 270
V +++VIY++ T RSRGFGFVTMS+V E E A + F+ Y++DGR L VN P + +
Sbjct: 117 VEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDG 176
Query: 271 --RAPR 274
R PR
Sbjct: 177 FSRGPR 182
Score = 124 (48.7 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFG-NQGF 202
D KLFVGNLP++VDS +LA LFE AG VE+ EV + + G ++GF
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
Score = 114 (45.2 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
+VIY+R++ RS+GFGFVT + +E + A++ D+DGR + V++A R
Sbjct: 234 RVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 320 (117.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 63/156 (40%), Positives = 103/156 (66%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN-KAAPRGTQPE--R 271
+Q++Y++ TDRSRGFGFVTM ++EEA++A++MF+ I GR + VN PRG + E R
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMR 204
Query: 272 AP-----RVF-EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
R + + ++Y GNL W + + L+ F + V+ A+V+Y+R TGRSRGFGF
Sbjct: 205 TKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGF 264
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361
++ S + A+A ++G ++GRA+R+N+A +R++
Sbjct: 265 ISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300
Score = 199 (75.1 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
E G R+YVGNLP+ + ++ L Q+F E G VV+ ++VYD+ T RSRGFGFVTM S E +
Sbjct: 114 EEG-RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 337 AIAALDGQNLDGRAIRVNVAE 357
A+ + + GR ++VN E
Sbjct: 173 AMQMFNSSQIGGRTVKVNFPE 193
Score = 117 (46.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+VIY R T RSRGFGF++ + E + A+ + +++GR L +N A+ R +P +P
Sbjct: 249 KVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASER-EKPTVSPPS 307
Query: 276 FEPG 279
E G
Sbjct: 308 VEEG 311
Score = 86 (35.3 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 113 ADETEGNLSD---WGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPY 169
A ETE + +D E E+ V E G+ + +L+VGNLPY
Sbjct: 69 AAETEASSADDEIQASVEEEEEVEEEGDE---GEEEVEEEKQTTQASGEEGRLYVGNLPY 125
Query: 170 DVDSEKLAMLFEKAGTVEIAEVKF 193
+ S +L+ +F +AGTV ++ +
Sbjct: 126 TITSSELSQIFGEAGTVVDVQIVY 149
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 320 (117.7 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 68/147 (46%), Positives = 95/147 (64%)
Query: 214 LLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAP 273
L++V+YNR+T +SRGF FVTMS VE+ ++ + GR L VN A +P + P
Sbjct: 113 LVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK--PKPNKEP 170
Query: 274 RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
E +++VGNL W V + L F E G VV ARVV+D +TGRSRG+GFV SS+ E
Sbjct: 171 LYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAE 230
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQ 360
+ A+ +LDG L+GRAIRVN+A+ ++
Sbjct: 231 METALESLDGFELEGRAIRVNLAQGKK 257
Score = 176 (67.0 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++Y GNLP+ VD+A L Q+ + V+Y+R+TG+SRGF FVTMS+ + N I
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 341 LDGQNLDGRAIRVNVAE 357
LDG GRA++VN A+
Sbjct: 146 LDGTEYLGRALKVNFAD 162
Score = 82 (33.9 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFG-NQGF 202
+ KL+ GNLPY+VDS LA + + E+ EV ++ G ++GF
Sbjct: 84 NTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGF 128
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 259 (96.2 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 63/152 (41%), Positives = 89/152 (58%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN-KAAPRGTQPE 270
V +QV+Y++ + RSR FGF TM +VE+A VE + ++GR + VN P + P+
Sbjct: 102 VEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPD 161
Query: 271 RAPRVFEPG------FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFG 324
+ E +++YVGNL V LE +FSE GKVV+A+V T +S GFG
Sbjct: 162 LSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFG 221
Query: 325 FVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356
FVT SSE ++ AI AL+ L+G+ IRVN A
Sbjct: 222 FVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 267 TQPERAPRVFEPGF----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRG 322
T+ E P +P R+Y+GN+P V N +L ++ EHG V +V+YD+ +GRSR
Sbjct: 59 TETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 323 FGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357
FGF TM S + N + L+G ++GR I+VN+ E
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
Score = 67 (28.6 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKF 193
++++GN+P V +E+L L E+ G VE +V +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMY 109
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 235 (87.8 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 51/150 (34%), Positives = 87/150 (58%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT--VNKAAPRGTQPERAP 273
+VIY R TDRSRG+G+V AEKA++ +IDGR + ++ + P G +RA
Sbjct: 198 RVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNN-DRAK 256
Query: 274 RV----FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMS 329
+ EP +++GNL + D + ++F++HG+VV+ R+ ET + +GFG+V S
Sbjct: 257 KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFS 316
Query: 330 SETELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ + A+ AL G+ +D R +R++ + R
Sbjct: 317 NMEDAKKALDALQGEYIDNRPVRLDFSSPR 346
Score = 163 (62.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
EP I+VG L W +D+ L++ F G V+ ARV+Y+R T RSRG+G+V +++
Sbjct: 166 EPA-TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEK 224
Query: 337 AIAALDGQNLDGRAIRVNVAEDR 359
AI + G+ +DGR I +++ +
Sbjct: 225 AIQEMQGKEIDGRPINCDMSTSK 247
Score = 57 (25.1 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 26/117 (22%), Positives = 39/117 (33%)
Query: 75 AQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVE 134
+ +SD + EE+++ T E+E S+ + + ED E
Sbjct: 90 SSSSDSSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEE 149
Query: 135 AGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
E A +FVG L + +D E L FE G V A V
Sbjct: 150 EDEESSNKKQKNEETEE-------PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARV 199
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 215 (80.7 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
Identities = 47/147 (31%), Positives = 86/147 (58%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN------KAAPR 265
V+ +++I ++ ++RGF FVTM++ EEA+ A++ F + + GR+++V+ K P+
Sbjct: 121 VNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPK 179
Query: 266 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFG 324
+P + ++YV NL W+ + L ++F+ V+ARVV+ GRS G+G
Sbjct: 180 SPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYG 239
Query: 325 FVTMSSETELNDAIAALDGQNLDGRAI 351
FV+ ++ E +AI L+G+ + GR I
Sbjct: 240 FVSFATREEAENAITKLNGKEIMGRPI 266
Score = 129 (50.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++V NLPW + + ++F + G V N ++ ++ G++RGF FVTM+S E AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 341 LDGQNLDGRAIRVNVA 356
D + GR I V+ A
Sbjct: 155 FDTFQVSGRIISVSFA 170
Score = 64 (27.6 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGF 202
KLFV NLP+ + ++ LF + GTV E+ N+GF
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGF 137
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 218 (81.8 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 56/160 (35%), Positives = 90/160 (56%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE- 270
V+ +VI +RE+ RS+GFG+V +T EEAEKA IDGR + V+ + + T
Sbjct: 265 VTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSND 324
Query: 271 ----RAPR----VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRG 322
RA + V ++VGNLP++ D + FSE +V + R+ ++E+GR +G
Sbjct: 325 AAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKG 384
Query: 323 FGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
FG+VT +S + A L+GQ+++GR R++ + R R
Sbjct: 385 FGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYSTPRPPR 424
Score = 169 (64.5 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
++VGNL W VD+A L + F G V +ARV+ DRE+GRS+GFG+V ++ E A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 342 DGQNLDGRAIRVNVAEDRQRRSS 364
G +DGR I+V+ + + S+
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSN 323
Score = 70 (29.7 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 113 ADETEGNLSDWGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVD 172
+D + + SD E + T + +R+ + LFVGNL ++VD
Sbjct: 192 SDSSGSDSSDDEEEKPAKTEAPSKKRKAEEEEEAPAKKTKTEESDKPSTLFVGNLSWNVD 251
Query: 173 SEKLAMLFEKAGTVEIAEV 191
LA F+ GTV A V
Sbjct: 252 DAMLAEEFKFCGTVTSARV 270
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 210 (79.0 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 55/163 (33%), Positives = 89/163 (54%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR--GTQ- 268
+S+ V N +T SRG G+VTM ++ A+ A+ ++ GR + V + GT+
Sbjct: 135 ISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRR 194
Query: 269 -PE---RAPR---VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSR 321
PE P+ ++E ++YVGNLPW L FS+ G +V+ RV++DR+TGR+R
Sbjct: 195 NPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNR 254
Query: 322 GFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
F F++ +S E DA + +G +GR R+ V E ++ S
Sbjct: 255 VFAFLSFTSGEE-RDAALSFNGTQYEGR--RIIVREGIEKSES 294
Score = 148 (57.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 37/92 (40%), Positives = 52/92 (56%)
Query: 268 QPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVY-DRETGRSRGFGFV 326
+P + PR E +YV N+P D A+L +F G V++ VV + +TG SRG G+V
Sbjct: 100 EPVKKPRPCE----LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYV 155
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAED 358
TM S AIA+LDG + GR +RV + D
Sbjct: 156 TMGSINSAKIAIASLDGTEVGGREMRVRYSVD 187
Score = 51 (23.0 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+L+V N+P D +L +F+ GTV EV
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEV 139
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W D+ LE F+++G V++++++ DRETGRSRGFGFVT E + DAI
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 340 ALDGQNLDGRAIRVNVAEDR 359
++GQ+LDGR+I VN A+ R
Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87
Score = 126 (49.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267
++I +RET RSRGFGFVT + + A+E + D+DGR +TVN+A RG+
Sbjct: 38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGS 89
Score = 39 (18.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
+ FVG L + D L F + G V
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDV 34
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 197 (74.4 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 59 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 118
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 119 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 176
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 177 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 209
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/83 (30%), Positives = 51/83 (61%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+Y+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ +
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 342 DGQNLDGRAIRVNVAEDRQRRSS 364
+G+ L+G+ I V A+ + R +
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQT 107
Score = 44 (20.5 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFG 48
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 45/87 (51%), Positives = 61/87 (70%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W D++ L+Q F+ G+V A V+ DRETGRSRGFGFV+ S E N+AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 341 LDGQNLDGRAIRVNVAEDRQR--RSSF 365
+DG+ L+GR IRVN+A +R RSSF
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSF 122
Score = 110 (43.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269
VI +RET RSRGFGFV+ S + A A++ +++GR + VN A R + P
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118
Score = 53 (23.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+KLFVG L + D L F G V A V
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATV 66
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 187 (70.9 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 48/147 (32%), Positives = 78/147 (53%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE------- 277
+S+GFGFV T E A+KAV H IDG++L V +A + + R FE
Sbjct: 73 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 132
Query: 278 ---PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETEL 334
PG IY+ NL +++ +L++ FS G + A+V+ E G+ +GFG V SS E
Sbjct: 133 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEA 190
Query: 335 NDAIAALDGQNLDGRAIRVNVAEDRQR 361
A+ ++G+ + + + V + + R+R
Sbjct: 191 TKAVDEMNGRIVGSKPLHVTLGQARRR 217
Score = 129 (50.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/81 (29%), Positives = 50/81 (61%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
++V N+ ++D+ +L+++F E+G + +V+ D +G+S+GFGFV + A+ L
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 342 DGQNLDGRAIRVNVAEDRQRR 362
G+++DG+ + V A+ + R
Sbjct: 96 HGKSIDGKVLYVGRAQKKIER 116
Score = 56 (24.8 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV N+ D+D EKL LF + G E +V
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKV 66
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 40/81 (49%), Positives = 60/81 (74%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W D+ L+ FS++G V++++++ DRETGRSRGFGFVT +S+ + AI
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 340 ALDGQNLDGRAIRVNVAEDRQ 360
A++GQ+LDGR I VN A+ R+
Sbjct: 66 AMNGQDLDGRNITVNEAQSRR 86
Score = 127 (49.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
++I +RET RSRGFGFVT ++ E +A+E + D+DGR +TVN+A R
Sbjct: 36 KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
Score = 45 (20.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
+ FVG L + D + L F K G V
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDV 32
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 185 (70.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + ++GR++ +A R + + P +
Sbjct: 38 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVNGRVVEPKRAVSR--EDSQRPDAY 94
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK +V DR +G+ RGF FVT + D
Sbjct: 95 LTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSV-D 153
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A QR S
Sbjct: 154 KIVIQKYHTVNGHNCEVRKAPSNQRGRS 181
Score = 113 (44.8 bits), Expect = 0.00029, P = 0.00029
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L F + G + + V+ D T RSRGFGFVT ++ E++ A+ A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 341 LDGQNLDGRAIRVNVA---EDRQRRSSF 365
++GR + A ED QR ++
Sbjct: 68 RP-HKVNGRVVEPKRAVSREDSQRPDAY 94
Score = 56 (24.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTL 33
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 184 (69.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 64 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 120
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 121 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 179
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 180 KIVIQKYHTVNGHNCEVRKALSKQEMAS 207
Score = 117 (46.2 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 25 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 84
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 85 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 116
Score = 56 (24.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTL 59
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 208 (78.3 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 48/157 (30%), Positives = 87/157 (55%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA--PRGTQP--ER 271
+VI R T +SRG+G+V + AEKA+E +IDGR + ++ + P ++ +R
Sbjct: 198 RVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDR 257
Query: 272 APRVFE----PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 327
A + + P +++GNL + + L VF E+G V++ RV +T + +GFG+V
Sbjct: 258 AKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQ 317
Query: 328 MSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
SS E A+ A++G+ ++GR R++ + R ++
Sbjct: 318 FSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNN 354
Score = 169 (64.5 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 35/104 (33%), Positives = 63/104 (60%)
Query: 261 KAAP-RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR 319
++AP + ++P A EP ++VG L W +D+A L++ F G V+ ARV+ +R TG+
Sbjct: 151 ESAPVKKSKP--AASTEEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGK 207
Query: 320 SRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
SRG+G+V S++ A+ + G+ +DGR I ++++ + S
Sbjct: 208 SRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHAS 251
Score = 59 (25.8 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 25/116 (21%), Positives = 41/116 (35%)
Query: 76 QTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA 135
++S +D+EE K+ + + +D + S+ EP + E+
Sbjct: 89 ESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDSDSDSE-EEPSKKRKAEES 147
Query: 136 GERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
E + A LFVG L +++D L FE G V A V
Sbjct: 148 KEEESAPVKKSKPAASTEE----PATLFVGRLSWNIDDAWLKREFEHIGGVIGARV 199
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 208 (78.3 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 48/157 (30%), Positives = 87/157 (55%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA--PRGTQP--ER 271
+VI R T +SRG+G+V + AEKA+E +IDGR + ++ + P ++ +R
Sbjct: 198 RVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDR 257
Query: 272 APRVFE----PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 327
A + + P +++GNL + + L VF E+G V++ RV +T + +GFG+V
Sbjct: 258 AKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQ 317
Query: 328 MSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
SS E A+ A++G+ ++GR R++ + R ++
Sbjct: 318 FSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNN 354
Score = 169 (64.5 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 35/104 (33%), Positives = 63/104 (60%)
Query: 261 KAAP-RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR 319
++AP + ++P A EP ++VG L W +D+A L++ F G V+ ARV+ +R TG+
Sbjct: 151 ESAPVKKSKP--AASTEEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGK 207
Query: 320 SRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
SRG+G+V S++ A+ + G+ +DGR I ++++ + S
Sbjct: 208 SRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHAS 251
Score = 59 (25.8 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 25/116 (21%), Positives = 41/116 (35%)
Query: 76 QTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA 135
++S +D+EE K+ + + +D + S+ EP + E+
Sbjct: 89 ESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDSDSDSE-EEPSKKRKAEES 147
Query: 136 GERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
E + A LFVG L +++D L FE G V A V
Sbjct: 148 KEEESAPVKKSKPAASTEE----PATLFVGRLSWNIDDAWLKREFEHIGGVIGARV 199
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 181 (68.8 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 45/148 (30%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A + + P +
Sbjct: 41 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV--SIEDSQRPGAY 97
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK +V DR +G+ RGF FVT + D
Sbjct: 98 L-NMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSV-D 155
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 156 KIVIQKYHTVNGHNCEVRKAPSKQEMAS 183
Score = 118 (46.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L F + G + + V+ D T RSRGFGFVT ++ E++ A+ A
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 341 LDGQNLDGRAIRVNVA---EDRQRRSSF 365
+DGR + A ED QR ++
Sbjct: 71 RP-HKVDGRVVEPKRAVSIEDSQRPGAY 97
Score = 56 (24.8 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTL 36
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 44/84 (52%), Positives = 59/84 (70%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G ++YVGNL + V +A LE+ F+ +G V +A+VV DR TGRSRGFGFV M S+ E AI
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 339 AALDGQNLDGRAIRVNVAEDRQRR 362
A L+G+ +DGR + VN A +RR
Sbjct: 62 AGLNGKEMDGRNLMVNEARPPERR 85
Score = 120 (47.3 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V QV+ +R T RSRGFGFV M + +EA+ A+ + ++DGR L VN+A P PER
Sbjct: 29 VKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNEARP----PER 84
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 217 (81.4 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 39/85 (45%), Positives = 59/85 (69%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G + + +D L + F+++G+VV+ RV+ DRETGRSRGFGFVT +S + AI A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 341 LDGQNLDGRAIRVNVAEDRQRRSSF 365
LDG++L GR ++VN A DR F
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGF 125
Score = 114 (45.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
+VI +RET RSRGFGFVT ++ E A A++ D+ GR++ VN A R
Sbjct: 70 RVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119
Score = 59 (25.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
+KLF+G + Y +D + L F K G V
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEV 66
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 221 (82.9 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 78/261 (29%), Positives = 115/261 (44%)
Query: 113 ADETEGNLSDWGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVD 172
+DE G S E E D ++ +R+ A LFVGNL ++V
Sbjct: 233 SDEESG--SSGSESEDSDKPADSKKRKAEEEPAAASKKSKTEEGAS-ANLFVGNLSWNVT 289
Query: 173 SEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232
E L FE+ G E++ +++ R+T RSRGFG+V
Sbjct: 290 EEWLHQEFEQFG--ELSA-------------------------RIMTERDTGRSRGFGYV 322
Query: 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR------GTQPERAP---RVF----EP- 278
+ +A KA E ++IDGR + ++ A R G ERA R F P
Sbjct: 323 EFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPE 382
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
++VGNLP+ + + +VF G V+ R+ D E+GR +GFG+V SS E A
Sbjct: 383 SDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAY 442
Query: 339 AALDGQNLDGRAIRVNVAEDR 359
L G +DGR IR++ + R
Sbjct: 443 NELQGAEIDGRPIRLDFSTPR 463
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 40/79 (50%), Positives = 54/79 (68%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L W D+A L F+ G VV+A+V+ DRETGRSRGFGFV + E AI+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+DG+ L+GR IRVN A DR
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 98 (39.6 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+VI +RET RSRGFGFV + A A+ +++GR + VN P +P APR
Sbjct: 65 KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN---PANDRPS-APRA 120
Query: 276 FEPG 279
+ G
Sbjct: 121 YGGG 124
Score = 47 (21.6 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
KLF+G L + D L F G V A+V
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKV 66
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 177 (67.4 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + R P
Sbjct: 38 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSRRPGAH 94
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 95 LTVKKIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 150
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 151 KIVIQKYHTVNGHNCEVRKALSKQEMAS 178
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L ++ + L F + G + + V+ D T RSRGFGFVT ++ E++ A+ A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 68 RP-HKVDGRVVEPKRAVSRE 86
Score = 53 (23.7 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L + E L FE+ GT+
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTL 33
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 38/83 (45%), Positives = 57/83 (68%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
E +R +VG L W ++ L++ FS+ G V++++++ DRE+GRSRGFGFVT E + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 337 AIAALDGQNLDGRAIRVNVAEDR 359
AI ++G+ LDGR I VN A+ R
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSR 85
Score = 120 (47.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267
++I +RE+ RSRGFGFVT + A+E + ++DGR++TVN+A RG+
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGS 87
Score = 40 (19.1 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
+ FVG L + + E L F + G V
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDV 32
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 176 (67.0 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 46/148 (31%), Positives = 72/148 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + AV + +DGR++ +A R + P
Sbjct: 39 VMRDPQTKRSRGFGFVTYSCVEEVDAAV-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 95
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ D ++G+ RGF FVT + D
Sbjct: 96 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTV-D 154
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 155 KIVDQKYHIINGHNCEVKKALSKQEMQS 182
Score = 117 (46.2 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++ +G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A+ A
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCA 68
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 69 RP-HKVDGRVVEPKRAVSRE 87
Score = 50 (22.7 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KL +G L ++ + L FEK GT+
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTL 34
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 200 (75.5 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 51/153 (33%), Positives = 83/153 (54%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
++ +R T RGFGFVT + AEK +E H ID R + + + PRG + V
Sbjct: 97 IMTDRITGNPRGFGFVTFADSAVAEKVLEEDHV--IDDRKVDLKRTLPRGDKDTDIKAVS 154
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+ +I+VG LP ++ L+ F +G ++ +++YD TGRSRGFGFVT +E ++
Sbjct: 155 KTR-KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
Query: 337 AIAALDGQ--NLDGRAIRVNVAEDRQ--RRSSF 365
+ DG+ L + + + AE ++ R +SF
Sbjct: 214 LFS--DGKVHELGDKQVEIKRAEPKRTGRDNSF 244
Score = 56 (24.8 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGN-QGF 202
KLFVG + ++ +E A F K G V + + + GN +GF
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGF 109
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 212 (79.7 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 52/153 (33%), Positives = 84/153 (54%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
+T RSRGFGFV EEA+KAV + +++GR++ V +A R + R FE
Sbjct: 226 DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS +G + +A+V+ E G S+GFGFV SS
Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 198 (74.8 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 47/139 (33%), Positives = 79/139 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIY 283
SRG+GFV T E A +A++ + ++ R + V + R + E +V E F +Y
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL ++FS G ++ +V+ D +TGRSRGFGFV + E A++ ++G
Sbjct: 195 IKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRR 362
+ ++GR I V A+ R R
Sbjct: 254 KEVNGRMIYVGRAQKRIER 272
Score = 148 (57.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 42/149 (28%), Positives = 76/149 (51%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ ++ +AE+A++ + I GR + + + +R P
Sbjct: 40 IRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS-------QRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G +++ NL +DN L FS G +++ +VV D E G SRG+GFV ++
Sbjct: 93 LRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETQEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
N AI ++G L+ R + V + R+ R
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRER 179
Score = 43 (20.2 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
Score = 38 (18.4 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGF 202
+++ N D+D ++L +F G +V ++GF
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGF 233
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 184 (69.8 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+P +R ++G L W + L F ++G +V A+VV D+ +GRSRGFGF+T + +++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
AIAA++G +LDGR I V+ A+ Q
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQ 87
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 205 (77.2 bits), Expect = 9.7e-16, P = 9.7e-16
Identities = 40/79 (50%), Positives = 58/79 (73%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+I+VG + + D L + FS++G+VV+A+++ DRETGRSRGF FVT +S E ++A+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 341 LDGQNLDGRAIRVNVAEDR 359
LDGQ+L GR IRVN A +R
Sbjct: 94 LDGQDLHGRRIRVNYATER 112
Score = 115 (45.5 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267
++I +RET RSRGF FVT ++ EEA A+++ + D+ GR + VN A RG+
Sbjct: 64 KIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQ-DLHGRRIRVNYATERGS 114
Score = 54 (24.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+K+FVG + Y D L F K G V A++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKI 65
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 205 (77.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 53/162 (32%), Positives = 86/162 (53%)
Query: 214 LLQV-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+L V + ++ SRGFGFV EEA+KAV + ++ GRLL V +A R +
Sbjct: 217 MLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNEL 276
Query: 273 PRVFEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRG 322
R FE G +YV NL +D+ +L + FS +G + +A+V+ E G S+G
Sbjct: 277 KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM--TEGGHSKG 334
Query: 323 FGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
FGFV SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 200 (75.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 50/141 (35%), Positives = 77/141 (54%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIY 283
SRGFGFV T E A+ A+ + ++ R + V + R + E R E F IY
Sbjct: 137 SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME--FTNIY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
V NL +VD RL+ +FS+ GK+++ +V+ D ++G SRGFGFV E A+ ++G
Sbjct: 195 VKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ + GR + V A+ R R +
Sbjct: 254 REVSGRLLYVGRAQKRVERQN 274
Score = 144 (55.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 42/149 (28%), Positives = 76/149 (51%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ ++ +AE+A++ + I G+ + + + +R P
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWS-------QRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G I++ NL +DN L FS G +++ +VV D E G SRGFGFV +
Sbjct: 93 LRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
+AI+ ++G L+ R + V + R+ R
Sbjct: 151 AQNAISTMNGMLLNDRKVFVGHFKSRRER 179
Score = 49 (22.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
++V NL DVD ++L LF + G
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFG 215
Score = 43 (20.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
Score = 37 (18.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGF 202
+F+ NL +D++ L F G + +V G++GF
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE-HGSRGF 140
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 191 (72.3 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 49/149 (32%), Positives = 79/149 (53%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----- 277
T +S+GFGFV T E A+KAV H IDG++L V +A + + R FE
Sbjct: 235 TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLK 294
Query: 278 -----PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
PG IY+ NL +++ +L++ FS G + A+V+ E G+ +GFG V SS
Sbjct: 295 DKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMM--EVGQGKGFGVVCFSSFE 352
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQR 361
E + A+ ++G+ + + + V + + R R
Sbjct: 353 EASKAVNEMNGRVVGSKTLHVTLGQARHR 381
Score = 152 (58.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 36/138 (26%), Positives = 72/138 (52%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYV 284
S+G+ +V ++ A +A+ + ++ R + V + P E R ++V
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFV 203
Query: 285 GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 344
N ++D+ +L+++FSE+G + +V+ D TG+S+GFGFV + A+ L G+
Sbjct: 204 KNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGK 262
Query: 345 NLDGRAIRVNVAEDRQRR 362
++DG+ + V A+ + R
Sbjct: 263 SIDGKVLCVGRAQKKIER 280
Score = 110 (43.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 228 GFGFVTMSTVEEAEKAVEMFHRYD-IDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGN 286
G+G+V +AE A+ + +D I+G+ + +QP+ R G I++ N
Sbjct: 60 GYGYVNFRFPADAEWALNTMN-FDLINGKPFRL-----MWSQPDDHLRKSGVG-NIFIKN 112
Query: 287 LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346
L +DN L +FS G +++ +VV D + G S+G+ +V S N AI ++G L
Sbjct: 113 LDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRL 170
Query: 347 DGRAIRV 353
+ R + V
Sbjct: 171 NNRQVYV 177
Score = 59 (25.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV N D+D EKL LF + G E +V
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKV 230
Score = 48 (22.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
A L+VG+L DV + L F AG + +
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRI 49
Score = 42 (19.8 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
+F+ NL +D+ L LF G +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNI 132
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 208 (78.3 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 52/152 (34%), Positives = 83/152 (54%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP---- 278
T RS+GFGFV EEA+KAV + +I+GR++ V +A R + R FE
Sbjct: 227 TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQE 286
Query: 279 ------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
G +YV NL +D+ RL + FS +G + +A+V+ E G S+GFGFV SS
Sbjct: 287 RVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPE 344
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 197 (74.4 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 48/141 (34%), Positives = 76/141 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
SRG GFV T E A +A++ + ++ R + V R + E R E F +Y
Sbjct: 137 SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAME--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL ++FS GK ++ +V+ D TGRS+GFGFV E A+A ++G
Sbjct: 195 IKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ ++GR + V A+ R R S
Sbjct: 254 KEINGRMVYVGRAQKRLERQS 274
Score = 135 (52.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 39/141 (27%), Positives = 70/141 (49%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIY 283
RS G+ ++ +AE+A++ + I GR + + + +R P + + G ++
Sbjct: 50 RSLGYAYINFQQPADAERALDTMNFEVIKGRPVRIMWS-------QRDPGLRKSGVGNVF 102
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ NL +DN L FS G +++ +VV D E G SRG GFV ++ AI ++G
Sbjct: 103 IKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGHGFVHFETQEAATRAIQTMNG 160
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
L+ R + V + R+ R +
Sbjct: 161 MLLNDRKVFVGHFKSRKEREA 181
Score = 43 (20.2 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
Score = 40 (19.1 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGF 202
+++ N D+D +L +F + G +V ++GF
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGF 233
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 185 (70.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 45/144 (31%), Positives = 73/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 40 VMRDPQTKRSRGFGFVTYSCVEEVDAAMSA-RPHKVDGRVVEPKRAVSR--EDSVKPGAH 96
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L + F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 97 LTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 155
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A +Q
Sbjct: 156 KIVVQKYHTINGHNCEVKKALSKQ 179
Score = 120 (47.3 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A++A
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 70 RP-HKVDGRVVEPKRAVSRE 88
Score = 56 (24.8 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTL 35
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 213 (80.0 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 66/219 (30%), Positives = 109/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG+ + +F Y L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGDDMDDERLKELFSKYGKTLS 219
Query: 217 V-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V + T +S+GFGFV+ E+A KAVE + DI+G+++ V +A + + R
Sbjct: 220 VKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRR 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 185 (70.2 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 37/139 (26%), Positives = 80/139 (57%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T + A++A+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N ++D+ RL+++FS++GK ++ +V+ D TG+S+GFGFV+ + N A+ ++G++
Sbjct: 197 NFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGKD 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
++G+ + V A+ + R +
Sbjct: 256 INGKMVFVGRAQKKVERQA 274
Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPIRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQD 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+ AI ++G L+ R + V + R+ R +
Sbjct: 150 AADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG V
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPV 37
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 202 (76.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 62/216 (28%), Positives = 108/216 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVI 218
D K+FVG + E+ A L +A +K FG + +F +L +
Sbjct: 37 DRKVFVGR--FKSRKEREAELGARAKEFTNVYIKN---FGEDMDDERLKDLFGPALSVKV 91
Query: 219 YNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 92 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 151
Query: 279 ----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTM 328
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV
Sbjct: 152 MKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCF 209
Query: 329 SSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 210 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 245
Score = 168 (64.2 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 43/141 (30%), Positives = 78/141 (55%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 66
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 67 IKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 122
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 123 KELNGKQIYVGRAQKKVERQT 143
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 194 (73.4 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 45/148 (30%), Positives = 78/148 (52%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N+ RSR FGFVT S+ EEA+ A+ + +DG + + +A R + P +
Sbjct: 37 VVMNQPLQRSRCFGFVTYSSTEEADAAMSA-RPHIVDGNNVDLKRAVAR--EDAGKPEML 93
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG L ++++ L+ FS+ G + A+V+ D++TG+ RGFGFV +
Sbjct: 94 AKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADK 153
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
A+ + ++ G + V A +Q S
Sbjct: 154 AVV-MKFHSICGHKVEVKKALTKQEMQS 180
Score = 43 (20.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLFVG L E L FE+ G
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYG 30
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 174 (66.3 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 44/148 (29%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T+ SRGFGFVT S VEE + A+ + + +DGR++ +A R + P
Sbjct: 30 VMTDPQTEHSRGFGFVTYSCVEEVDAAMCAWP-HKVDGRVVEPKRAVSR--EDSVKPGAH 86
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 87 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 145
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I + ++ V A +Q S
Sbjct: 146 KIVFQEHHAINRHNCEVKKAVSKQEMQS 173
Score = 37 (18.1 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
L +G L ++ + L EK GT+
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTL 25
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 178 (67.7 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 44/148 (29%), Positives = 75/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T R RGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 38 VMRDPNTKRPRGFGFVTYTTVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 94
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG++ + + L + F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 95 LTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSV-D 153
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 154 KIVIQKYHTVNGHNCEVRKALSKQEMAS 181
Score = 50 (22.7 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+ L ++ E L FE+ GT+
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTL 33
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 192 (72.6 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 48/147 (32%), Positives = 79/147 (53%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE------- 277
+S+GFGFV T E A+KAV H IDG++L V +A + + R FE
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296
Query: 278 ---PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETEL 334
PG IY+ NL +D+ +L++ FS G + A+V+ E G+ +GFG + SS E
Sbjct: 297 SRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV--EVGQGKGFGVICFSSFEEA 354
Query: 335 NDAIAALDGQNLDGRAIRVNVAEDRQR 361
A+ ++G+ + + ++V + + R+R
Sbjct: 355 TKAVDEMNGRIVGSKPLQVTLGQARRR 381
Score = 148 (57.2 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 40/161 (24%), Positives = 82/161 (50%)
Query: 208 AVFYV-----SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
A+FY+ S+L + + S+G+ +V ++ A +A+ + ++ R + V +
Sbjct: 121 ALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180
Query: 263 A-PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSR 321
P E R ++V N ++D+ +L+++FSE+G + +V+ D +G+S+
Sbjct: 181 KFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSK 239
Query: 322 GFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
GFGFV + A+ L G+++DG+ + V A+ + R
Sbjct: 240 GFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 37/128 (28%), Positives = 66/128 (51%)
Query: 228 GFGFVTMSTVEEAEKAVEMFHRYD-IDGRLLTVNKAAPRGTQPERAPRVFEPGF-RIYVG 285
G+G+V +AE A+ + +D I+G+ + +QP+ R+ + G I++
Sbjct: 60 GYGYVNFRFPADAEWALNTMN-FDLINGKPFRL-----MWSQPD--DRLRKSGIGNIFIK 111
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
NL +DN L +FS G +++ +VV D + G S+G+ +V S N AI ++G
Sbjct: 112 NLDKSIDNRALFYLFSAFGSILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVR 169
Query: 346 LDGRAIRV 353
L+ R + V
Sbjct: 170 LNNRQVYV 177
Score = 53 (23.7 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV N D+D +KL LF + G E +V
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKV 230
Score = 48 (22.0 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
A L+VG+L DV + L F AG + +
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRI 49
Score = 43 (20.2 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
+F+ NL +D+ L LF G++
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSI 132
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 185 (70.2 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 45/144 (31%), Positives = 73/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 52 VMRDPQTKRSRGFGFVTYSCVEEVDAAMSA-RPHKVDGRVVEPKRAVSR--EDSVKPGAH 108
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L + F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 109 LTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 167
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A +Q
Sbjct: 168 KIVVQKYHTINGHNCEVKKALSKQ 191
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A++A
Sbjct: 22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 82 RP-HKVDGRVVEPKRAVSRE 100
Score = 56 (24.8 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 22 KLFIGGLSFETTDDSLREHFEKWGTL 47
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 211 (79.3 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 67/217 (30%), Positives = 105/217 (48%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVK-FHFLFGNQGFHMWVCAVFYVSLLQV 217
D K+FVG+ + E+ L +A VK H QG + + F L
Sbjct: 165 DRKVFVGH--FKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQD-LFSRFGKMLSVK 221
Query: 218 IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE 277
+ ++ SRGFGFV EEA+KAV + ++ GRLL V +A R + R FE
Sbjct: 222 VMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFE 281
Query: 278 P----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 327
G +YV NL +D+ +L + FS +G + +A+V+ E G S+GFGFV
Sbjct: 282 QLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVC 339
Query: 328 MSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
SS E A+ ++G+ L + + V +A+ ++ R +
Sbjct: 340 FSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKA 376
Score = 139 (54.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 41/149 (27%), Positives = 74/149 (49%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ ++ +AE+A++ + I G+ + + + +R P
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWS-------QRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G I++ NL +DN L FS G +++ +VV D + G SRGFGFV +
Sbjct: 93 LRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
AI ++G L+ R + V + R+ R
Sbjct: 151 AQQAITTMNGMLLNDRKVFVGHFKSRRER 179
Score = 43 (20.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 184 (69.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 184 (69.8 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 184 (69.8 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 191 (72.3 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
GF +YVGN P++ L FS+ G V N R+V DRETGR RGF FV + E A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 339 AALDGQNLDGRAIRVNVAEDR 359
+G + +GRA+RVN+A++R
Sbjct: 63 DQFNGVDFNGRALRVNLAQNR 83
Score = 108 (43.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
VS ++++ +RET R RGF FV + A++AV+ F+ D +GR L VN A R
Sbjct: 30 VSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNR 83
Score = 51 (23.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
++VGN P+ + L F +AG V
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNV 30
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 191 (72.3 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
GF +YVGN P++ L FS+ G V N R+V DRETGR RGF FV + E A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 339 AALDGQNLDGRAIRVNVAEDR 359
+G + +GRA+RVN+A++R
Sbjct: 63 DQFNGVDFNGRALRVNLAQNR 83
Score = 108 (43.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
VS ++++ +RET R RGF FV + A++AV+ F+ D +GR L VN A R
Sbjct: 30 VSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNR 83
Score = 51 (23.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
++VGN P+ + L F +AG V
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNV 30
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 168 (64.2 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 45/148 (30%), Positives = 71/148 (47%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S EE + A+ + +DGR++ +A R + P
Sbjct: 44 VMRDPQTKRSRGFGFVTYSC-EEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 99
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 100 LTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 158
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 159 KIVVQKYHTINGHNCEVKKALSKQEMQS 186
Score = 118 (46.6 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E E++ A+ A
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCE-EVDAAMCA 72
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 73 RP-HKVDGRVVEPKRAVSRE 91
Score = 53 (23.7 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L F+K GT+
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTL 39
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 184 (69.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 122
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 181
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A+ A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 96 RP-HKVDGRVVEPKRAVSRE 114
Score = 56 (24.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTL 61
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 184 (69.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 184 (69.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 184 (69.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 184 (69.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 184 (69.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 184 (69.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 184 (69.8 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 44 VMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 100
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 101 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 159
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 160 KIVVQKYHTINGHNCEVKKALSKQEMQS 187
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A+ A
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 74 RP-HKVDGRVVEPKRAVSRE 92
Score = 56 (24.8 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTL 39
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 204 (76.9 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 50/153 (32%), Positives = 83/153 (54%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
++ RSRGFGFV EEA+KAV + +++GR++ V +A R + R FE
Sbjct: 226 DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + F +G + +A+V+ E G S+GFGFV SS
Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 197 (74.4 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 47/141 (33%), Positives = 80/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIY 283
SRG+GFV T E A +A++ + ++ R + V + R + E +V E F +Y
Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL ++FS G ++ +V+ D ++GRSRGFGFV + E A++ ++G
Sbjct: 195 IKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ ++GR I V A+ R R S
Sbjct: 254 KEVNGRMIYVGRAQKRIERQS 274
Score = 140 (54.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 41/149 (27%), Positives = 74/149 (49%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS + ++ +AE+A++ + I GR + + + +R P
Sbjct: 40 IRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS-------QRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G +++ NL +DN L FS G +++ +VV D E G SRG+GFV +
Sbjct: 93 LRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETHEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
N AI ++G L+ R + V + R+ R
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRER 179
Score = 42 (19.8 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L++G+L DV AML+EK
Sbjct: 11 ASLYIGDLHPDVTE---AMLYEK 30
Score = 37 (18.1 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGF 202
+++ N D+D ++L +F G +V ++GF
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGF 233
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 189 (71.6 bits), Expect = 8.7e-15, P = 8.7e-15
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L +E LEQVFS++G+V VV DRE+ RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA--EDRQRRSSF 365
++G+++DGR IRV+ A RR +
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSNDRRGGY 93
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 184 (69.8 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 187 (70.9 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 48/147 (32%), Positives = 78/147 (53%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE------- 277
+S+GFGFV T E A+KAV H IDG++L V +A + + R FE
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296
Query: 278 ---PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETEL 334
PG IY+ NL +++ +L++ FS G + A+V+ E G+ +GFG V SS E
Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEA 354
Query: 335 NDAIAALDGQNLDGRAIRVNVAEDRQR 361
A+ ++G+ + + + V + + R+R
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRR 381
Score = 146 (56.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 34/138 (24%), Positives = 72/138 (52%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYV 284
S+G+ +V ++ A +A+ + ++ R + V + P E R ++V
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFV 203
Query: 285 GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 344
N+ ++D+ +L+++F E+G + +V+ D +G+S+GFGFV + A+ L G+
Sbjct: 204 KNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Query: 345 NLDGRAIRVNVAEDRQRR 362
++DG+ + V A+ + R
Sbjct: 263 SIDGKVLYVGRAQKKIER 280
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 228 GFGFVTMSTVEEAEKAVEMFHRYD-IDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGN 286
G+G+V +AE A+ + +D I+G+ + +QP+ R G I++ N
Sbjct: 60 GYGYVNFRFPADAEWALNTMN-FDLINGKPFRL-----MWSQPDDRLRKSGVG-NIFIKN 112
Query: 287 LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346
L +DN L +FS G +++ +VV D + G S+G+ +V S N AI ++G L
Sbjct: 113 LDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRL 170
Query: 347 DGRAIRV 353
+ R + V
Sbjct: 171 NNRQVYV 177
Score = 56 (24.8 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV N+ D+D EKL LF + G E +V
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKV 230
Score = 48 (22.0 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
A L+VG+L DV + L F AG + +
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRI 49
Score = 42 (19.8 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
+F+ NL +D+ L LF G +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNI 132
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 191 (72.3 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 46/144 (31%), Positives = 75/144 (52%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N + RSR FGFVT ST EEA+ A+ + +DG+ + V +A R + P
Sbjct: 39 VVQNDQLQRSRCFGFVTYSTSEEADAAMAA-RPHVVDGKNVEVKRAVAR--EDAGRPEAL 95
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG L +++ L + FS+ G + + V+ D++TG+ RGFGFV +
Sbjct: 96 AKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADK 155
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A+ L ++G + V A +Q
Sbjct: 156 AVV-LKFHMINGHKVEVKKALTKQ 178
Score = 44 (20.5 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L ++ L FE+ G +
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNL 34
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 203 (76.5 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 47/141 (33%), Positives = 83/141 (58%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIY 283
S+G+GFV T EEAE+A+E + ++ R + V + + R Q E R E F +Y
Sbjct: 137 SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ NL ++D+ RL+ +FS G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
++L+G+ I V A+ + R +
Sbjct: 254 KDLNGKQIYVGRAQKKVERQT 274
Score = 155 (59.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 51/203 (25%), Positives = 95/203 (46%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+++ NL D+D E+L LF + G +V ++GF +V + + +
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFG-FVSFERHEDARKAVDEM 251
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
G ++ E+ E+ H++ G++ +K +R+ R G
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKF---GQMKQ-DKPKIEQVPQDRSVRC--QGVN 305
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YV NL +D+ RL + FS G + +A+V E GRS+GFGFV SS E A+ +
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTM--EGGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 342 DGQNLDGRAIRVNVAEDRQRRSS 364
+G+ + + + V +A+ ++ R +
Sbjct: 364 NGRIVATKPLYVALAQRKEERQA 386
Score = 153 (58.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 47/152 (30%), Positives = 79/152 (51%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V +R T RS G+ V +E+AE+A++ + +D V K P R +R P
Sbjct: 40 IRVYRDRTTRRSLGYASVNFQQLEDAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I+V NL +D+ L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E AI ++G L+ R + V + R+ R +
Sbjct: 150 EAERAIEKMNGMFLNDRKVFVGRFKSRRDRQA 181
Score = 43 (20.2 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
Score = 40 (19.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
+FV NL +DS+ L F G +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNI 125
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 208 (78.3 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 62/217 (28%), Positives = 107/217 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKA-GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQV 217
D K+FVG+ + ++ A L +A G I QG ++V
Sbjct: 165 DRKVFVGH--FKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKV 222
Query: 218 IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE 277
+ + +SRGFGF+ EEA+KAV+ + ++ G+LL V +A R + R FE
Sbjct: 223 MRD-SNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFE 281
Query: 278 P----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 327
G +YV NL +++ RL++VFS +G + +A+V+ E+ S+GFGFV
Sbjct: 282 QMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVM--TESSHSKGFGFVC 339
Query: 328 MSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 149 (57.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 43/151 (28%), Positives = 76/151 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ ++ +AE+A++ + I G+ + + + R P
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRIMWS-------HRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ G I++ NL +DN L FS G +++++VVY+ E G SRGFGFV +
Sbjct: 93 LRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYN-EHG-SRGFGFVHFETHEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + RQ+R +
Sbjct: 151 AQKAINTMNGMLLNDRKVFVGHFKSRQKREA 181
Score = 45 (20.9 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
+ L+VG+L DV L +F GT+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTI 37
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 188 (71.2 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 35/84 (41%), Positives = 52/84 (61%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P ++++G L W VD L+ FS G+V R+ YD+ +GRSRGFGFV + E + A
Sbjct: 39 PSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98
Query: 338 IAALDGQNLDGRAIRVNVAEDRQR 361
A+DG+ L GR +R++ A +R R
Sbjct: 99 KDAMDGKGLLGRPLRISFALERVR 122
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 207 (77.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 55/188 (29%), Positives = 93/188 (49%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLF---GNQGFHMWVCAVFYVSLLQVI 218
L V N+P +DS +L LF+K G +E ++ F+ GN ++ +
Sbjct: 84 LIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNSNININSNNSNGSNSNNNN 143
Query: 219 YNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP 278
N + S G+GFV S +EA A+E + +++D + L V+ A +Q A
Sbjct: 144 NNSNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHA------ 197
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
+Y+ L V NA L++VF G V++ +++ D +TG SR GFV S E A+
Sbjct: 198 --NLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAV 255
Query: 339 AALDGQNL 346
++++G N+
Sbjct: 256 SSMNGANI 263
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 185 (70.2 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 43/147 (29%), Positives = 83/147 (56%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+ ++V N + +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+
Sbjct: 135 TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 193
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+P ++V L + L++ F G V AR+V DRETG S+GFGFV +SE
Sbjct: 194 ----QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEE 246
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ A A++ +DG + ++ A+ +
Sbjct: 247 DAKAAKEAMEDGEIDGNKVTLDWAKPK 273
Score = 103 (41.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266
+++ +RET S+GFGFV ++ E+A+ A E +IDG +T++ A P+G
Sbjct: 224 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 274
Score = 49 (22.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 113 LVLSNLSYSATEETLQEVFEKATFIKVPQ 141
Score = 43 (20.2 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 167 LPYDVDSEKLAMLFEKAGTVEI 188
LPY V ++L +FE A + +
Sbjct: 1 LPYKVTQDELKEVFEDAAEIRL 22
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 197 (74.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 58 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 117
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 118 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 175
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 176 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 208
Score = 136 (52.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 25/83 (30%), Positives = 52/83 (62%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+Y+ N ++D+ RL+++F + G ++ +V+ D E+G+S+GFGFV+ + A+ +
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 342 DGQNLDGRAIRVNVAEDRQRRSS 364
+G+ L+G+ I V A+ + R +
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQT 106
Score = 45 (20.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFG 47
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 206 (77.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 57/162 (35%), Positives = 87/162 (53%)
Query: 211 YVSLLQVIYNRE-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269
Y ++ V+ R+ RSRGFGFV E A+KA+E + + L V KA + +
Sbjct: 225 YGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Query: 270 ERAPRVF------EPGFR---IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRS 320
E + F +P R +YV NL ++ RL ++F +G++V+A+V+ E GRS
Sbjct: 285 EMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMC-HENGRS 343
Query: 321 RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
+GFGFV S+ E A L+G +DG+ I V VAE ++ R
Sbjct: 344 KGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 46/150 (30%), Positives = 68/150 (45%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
S+L E +S+GFGFV T + A A H + G+ L V K + + A
Sbjct: 137 SILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMA 196
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ +YV NL V + L +FS++G V + V+ D GRSRGFGFV +
Sbjct: 197 GN--QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPE 253
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
A+ +L G L + + V A + R
Sbjct: 254 NAKKAMESLCGLQLGSKKLFVGKALKKDER 283
Score = 132 (51.5 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 38/146 (26%), Positives = 71/146 (48%)
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 279
N T +S + ++ + A A+ + D+ G+ + + + R R R G
Sbjct: 55 NSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRI-MWSQRDLAYRRRTRT---G 110
Query: 280 F-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
F +YV NL + ++ LE++F G +++ +VV E G+S+GFGFV +E A
Sbjct: 111 FANLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSAR 168
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRSS 364
+AL G + G+ + V ++ R++
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAA 194
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 207 (77.9 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 64/219 (29%), Positives = 108/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A + KA +K FG+ + +F Y L
Sbjct: 166 DRKVFVGR--FKSRKEREAEMGAKAKEFTNVYIKN---FGDDMDDQRLKELFDKYGKTLS 220
Query: 217 V-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V + T +SRGFGFV+ E+A KAVE + +++G+ + V +A + + R
Sbjct: 221 VKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRK 280
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 281 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGF 338
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 339 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 377
Score = 185 (70.2 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 38/139 (27%), Positives = 77/139 (55%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T + A++A+E + ++ R + V + R + + +Y+
Sbjct: 138 SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIK 197
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N ++D+ RL+++F ++GK ++ +V+ D TG+SRGFGFV+ + N A+ ++G
Sbjct: 198 NFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEMNGTE 256
Query: 346 LDGRAIRVNVAEDRQRRSS 364
L+G+ + V A+ + R +
Sbjct: 257 LNGKTVFVGRAQKKMERQA 275
Score = 135 (52.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 41 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VVKGKPIRIMWSQRDP 92
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 93 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQD 150
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+ AI ++G L+ R + V + R+ R +
Sbjct: 151 AADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 182
Score = 43 (20.2 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L D+ L F AG V
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPV 38
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 184 (69.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 44 VMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 100
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 101 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 159
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 160 KIVVQKYHTINGHNCEVKKALSKQEMQS 187
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A+ A
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 74 RP-HKVDGRVVEPKRAVSRE 92
Score = 56 (24.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTL 39
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 192 (72.6 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 45/144 (31%), Positives = 76/144 (52%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ-PERAPRV 275
V+ N E+ RSRGFGFVT + ++ + +DGR + PR Q P++
Sbjct: 38 VMKNNESGRSRGFGFVTFADPTNVNHVLQN-GPHTLDGRTIDPKPCNPRTLQKPKKGG-- 94
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
G+++++G LP V L F+ +GKV ++YD+E +SRGFGF++ E+ +
Sbjct: 95 ---GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSV- 150
Query: 336 DAIAALDGQNLDGRAIRVNVAEDR 359
+ + NL+G+ + + AE R
Sbjct: 151 EHVTNERYINLNGKQVEIKKAEPR 174
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L WE L + F G +++ V+ + E+GRSRGFGFVT + T +N +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ- 66
Query: 341 LDGQN-LDGRAI 351
+G + LDGR I
Sbjct: 67 -NGPHTLDGRTI 77
Score = 49 (22.3 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L ++ E L+ F + G +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDI 33
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 185 (70.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 45/144 (31%), Positives = 73/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 64 VMRDPQTKRSRGFGFVTYSCVEEVDAAMSA-RPHKVDGRVVEPKRAVSR--EDSVKPGAH 120
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L + F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 121 LTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 179
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A +Q
Sbjct: 180 KIVVQKYHTINGHNCEVKKALSKQ 203
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 261 KAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRS 320
K R + P+ E ++++G L +E + L + F + G + + V+ D +T RS
Sbjct: 14 KRKGRRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 73
Query: 321 RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
RGFGFVT S E++ A++A +DGR + A R+
Sbjct: 74 RGFGFVTYSCVEEVDAAMSARP-HKVDGRVVEPKRAVSRE 112
Score = 56 (24.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 34 KLFIGGLSFETTDDSLREHFEKWGTL 59
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 200 (75.5 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 51/162 (31%), Positives = 86/162 (53%)
Query: 214 LLQV-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+L V + ++ SRGFGFV E+A+KAV + ++ GRLL V +A R +
Sbjct: 217 ILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNEL 276
Query: 273 PRVFEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRG 322
R FE G +YV NL +D+ +L + F+ +G + +A+V+ E G S+G
Sbjct: 277 KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVM--TEGGHSKG 334
Query: 323 FGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
FGFV SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 192 (72.6 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 48/141 (34%), Positives = 76/141 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIY 283
SRGFGFV T E A+ A+ + ++ R + V + R + E R E F IY
Sbjct: 137 SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALE--FTNIY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
V NL +VD L+ +FS+ GK+++ +V+ D ++G SRGFGFV + A+ ++G
Sbjct: 195 VKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ + GR + V A+ R R +
Sbjct: 254 KEVSGRLLYVGRAQKRVERQN 274
Score = 139 (54.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 40/151 (26%), Positives = 76/151 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ ++ +AE+A++ + I G+ + + + +R P
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWS-------QRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G +++ NL +DN L FS G +++ +VV D + G SRGFGFV +
Sbjct: 93 LRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+AI ++G L+ R + V + R+ R +
Sbjct: 151 AQNAIRTMNGMLLNDRKVFVGHFKSRREREA 181
Score = 44 (20.5 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
++V NL DVD L LF + G +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKI 217
Score = 43 (20.2 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 187 (70.9 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 43/147 (29%), Positives = 83/147 (56%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+ ++V N + +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+
Sbjct: 164 TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 222
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+P ++V L E L++ F G + AR+V DRETG S+GFGFV +SE
Sbjct: 223 ----QPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEE 275
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ A A++ +DG + ++ A+ +
Sbjct: 276 DAKAAKEAMEDGEIDGNKVTLDWAKPK 302
Score = 122 (48.0 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 33/139 (23%), Positives = 66/139 (47%)
Query: 227 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGN 286
R FG+V + E+ EKA+E+ + G + + K + ++ +R R + N
Sbjct: 1 RKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAKN 53
Query: 287 LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346
LP++V L++VF + V R+V + G+S+G ++ +E + + G +
Sbjct: 54 LPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 108
Query: 347 DGRAIRVNVAEDRQRRSSF 365
DGR+I + ++ + F
Sbjct: 109 DGRSISLYYTGEKGQNQDF 127
Score = 120 (47.3 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 34/139 (24%), Positives = 68/139 (48%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFR 281
+S+G ++ T +AEK +E +IDGR +++ +G Q R + + +
Sbjct: 81 KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESK 140
Query: 282 IYV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
V NL + L++VF E + V + G+S+G+ F+ +S + +A+ +
Sbjct: 141 TLVLSNLAYSATEETLQEVF-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNS 196
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+ + ++GRAIR+ + R
Sbjct: 197 CNKREIEGRAIRLELQGPR 215
Score = 103 (41.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266
+++ +RET S+GFGFV ++ E+A+ A E +IDG +T++ A P+G
Sbjct: 253 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 303
Score = 52 (23.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A VEI
Sbjct: 45 DARTLLAKNLPYKVTQDELKEVFEDA--VEI 73
Score = 49 (22.3 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 142 LVLSNLAYSATEETLQEVFEKATFIKVPQ 170
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 181 (68.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALCKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 181 (68.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 44/148 (29%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVE+ + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 113 (44.8 bits), Expect = 0.00056, P = 0.00056
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
+++ A+ A +DGR + A ED QR
Sbjct: 66 EKVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 0.00011, P = 0.00011
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSSGGR 101
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 46/144 (31%), Positives = 74/144 (51%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N +T RSR FGFVT S VEEA+ A+ + +DG + + +A R + P
Sbjct: 38 VVVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSR--EDSARPGAH 94
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG L +V L + FS+ G V A ++ D+++G+ RGFGFV S + D
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSH-DAAD 153
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A + + G + V A ++
Sbjct: 154 KAAVVKFHPIQGHRVEVKKAVPKE 177
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 184 (69.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 203 (76.5 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 58/188 (30%), Positives = 101/188 (53%)
Query: 187 EIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 246
EI E +F LFG G ++ L ++ + + D+ RGFGFV + E A+KAV+
Sbjct: 271 EITEQEFSDLFGQFG---------EITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDE 320
Query: 247 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARL 296
+ + G+ L V +A + + E + +E G +++ NL EVD+ RL
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 297 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356
+ FS G + +A+++ D E G+S+GFGFV ++ E N A+ ++ + L G+ + V +A
Sbjct: 381 KAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 357 EDRQ-RRS 363
+ ++ RRS
Sbjct: 440 QRKEVRRS 447
Score = 159 (61.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 44/153 (28%), Positives = 76/153 (49%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ ++V + T RS G+ +V +E+ EKA++ + I GR + +Q +
Sbjct: 106 VASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI-----MWSQRDP 160
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+ R G +++ NL +DN L FS GK+++ +V D E G ++G+GFV S
Sbjct: 161 SLRKMGTG-NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSV 218
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
N AI ++G L+ + + V R+ R S
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQS 251
Score = 138 (53.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 39/146 (26%), Positives = 70/146 (47%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA--APRGTQPERAPRV--FE 277
E ++G+GFV +VE A A+E H ++G LL K ++ ER +V +
Sbjct: 203 ELGNAKGYGFVHFDSVESANAAIE--H---VNGMLLNDKKVYVGHHVSRRERQSKVEALK 257
Query: 278 PGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
F +Y+ NL E+ +F + G++ + +V D + + RGFGFV ++
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQK 316
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRR 362
A+ L+ + G+ + V A+ + R
Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHER 342
Score = 40 (19.1 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG L V L LF G V
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPV 106
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 184 (69.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 184 (69.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
Identities = 31/93 (33%), Positives = 50/93 (53%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A +DGR + A ED QR
Sbjct: 66 EEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 184 (69.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 122
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 181
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A+ A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 96 RP-HKVDGRVVEPKRAVSRE 114
Score = 56 (24.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTL 61
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 184 (69.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 122
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 181
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A+ A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 96 RP-HKVDGRVVEPKRAVSRE 114
Score = 56 (24.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTL 61
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 184 (69.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 122
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 181
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A+ A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 96 RP-HKVDGRVVEPKRAVSRE 114
Score = 56 (24.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTL 61
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 184 (69.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 122
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 181
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + L + F + G + + V+ D +T RSRGFGFVT S E++ A+ A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A R+
Sbjct: 96 RP-HKVDGRVVEPKRAVSRE 114
Score = 56 (24.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTL 61
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 184 (69.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + +T RSRGFGFVT S VEE + A+ + +DGR++ +A R + P
Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSR--EDSVKPGAH 122
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ V+ DR++G+ RGF FVT + D
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV-D 181
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q S
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 122 (48.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 265 RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFG 324
RG Q P+ E ++++G L +E + L + F + G + + V+ D +T RSRGFG
Sbjct: 21 RGAQGHD-PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 79
Query: 325 FVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
FVT S E++ A+ A +DGR + A R+
Sbjct: 80 FVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSRE 114
Score = 56 (24.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ + L FEK GT+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTL 61
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 184 (69.8 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 66 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAH 122
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 123 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 181
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G V A +Q +S
Sbjct: 182 KIVIQKYHTVNGHNCEVRKALSKQEMAS 209
Score = 135 (52.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 38/115 (33%), Positives = 60/115 (52%)
Query: 251 DIDGRLLTVNKAAPRGTQPE-RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA 309
D GR L + KA R + ++P+ E ++++G L +E + L F + G + +
Sbjct: 5 DAQGRSLPMPKARRRDKKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDC 64
Query: 310 RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
V+ D T RSRGFGFVT ++ E++ A+ A +DGR + A ED QR
Sbjct: 65 VVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP-HKVDGRVVEPKRAVSREDSQR 118
Score = 56 (24.8 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTL 61
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 185 (70.2 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L ++ LE+ FS++G + V+ DRET RSRGFGFVT + + DA+AA
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 341 LDGQNLDGRAIRVNVAEDRQRRS 363
++G+ +DGR IRV+ A RS
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRS 106
Score = 124 (48.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266
++ + VI +RETDRSRGFGFVT E+A+ A+ + +DGR++ V++A G
Sbjct: 49 IAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVDEAGKSG 103
Score = 68 (29.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+ KLF+G L YD + L F K GT+ +V
Sbjct: 22 EGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDV 54
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 204 (76.9 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 67 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDESLKELFSQFGKTLS 121
Query: 217 VIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + +I G+++ V +A + + R
Sbjct: 122 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 181
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 182 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 239
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 240 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 278
Score = 183 (69.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 40/139 (28%), Positives = 75/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 39 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 98
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D G+S+GFGFV+ + N A+ ++G+
Sbjct: 99 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKE 157
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 158 ISGKIIFVGRAQKKVERQA 176
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 197 (74.4 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 162 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 221
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 222 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 279
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 280 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 312
Score = 183 (69.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 43/141 (30%), Positives = 80/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 73 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 130
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+++F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 131 IKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 189
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 190 KELNGKQIYVGRAQKKVERQT 210
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 252 IDGRLLTVNKAAP-RGTQPERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNA 309
+D V K P R +R P + + G I++ NL +DN L FS G +++
Sbjct: 5 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 64
Query: 310 RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+VV D E G S+G+GFV ++ AI ++G L+ R + V + R+ R +
Sbjct: 65 KVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 117
Score = 45 (20.9 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFG 151
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 200 (75.5 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 50/150 (33%), Positives = 81/150 (54%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP------ 278
RSRGFGFV EEA+KAV + +++GR++ V +A R + R FE
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERI 288
Query: 279 ----GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETEL 334
G +YV NL +D+ RL + FS +G + + +V+ E G S+GFGFV SS E
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEA 346
Query: 335 NDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
A+ ++G+ + + + V +A+ ++ R +
Sbjct: 347 TKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 191 (72.3 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 45/139 (32%), Positives = 78/139 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIY 283
SRG+GFV T E A +A++ + ++ R + V + R + E +V E F +Y
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+++FS G ++ +V+ D +GRSRGFGFV + E A+ ++G
Sbjct: 195 IKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRR 362
+ ++GR + V A+ R R
Sbjct: 254 KEVNGRMVYVGRAQKRIER 272
Score = 146 (56.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 42/149 (28%), Positives = 76/149 (51%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ ++ +AE+A++ + I GR + + + +R P
Sbjct: 40 IRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS-------QRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G +++ NL +DN L FS G +++ +VV D E G SRG+GFV ++
Sbjct: 93 LRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
N AI ++G L+ R + V + R+ R
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRER 179
Score = 42 (19.8 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L++G+L DV AML+EK
Sbjct: 11 ASLYIGDLHPDVTE---AMLYEK 30
Score = 37 (18.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGF 202
+++ N D+D ++L +F G +V ++GF
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGF 233
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 184 (69.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++ VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA-EDRQRRS 363
++G+++DGR IRV+ A + + RS
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRS 90
Score = 113 (44.8 bits), Expect = 0.00012, P = 0.00012
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A G E
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA---GKSSEN 88
Query: 272 APRVFEPG 279
R + G
Sbjct: 89 RSRGYRGG 96
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 184 (69.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++ VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA-EDRQRRS 363
++G+++DGR IRV+ A + + RS
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRS 90
Score = 113 (44.8 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A G E
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA---GKSSEN 88
Query: 272 APRVFEPG 279
R + G
Sbjct: 89 RSRGYRGG 96
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 184 (69.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++ VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA-EDRQRRS 363
++G+++DGR IRV+ A + + RS
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRS 90
Score = 113 (44.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A G E
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA---GKSSEN 88
Query: 272 APRVFEPG 279
R + G
Sbjct: 89 RSRGYRGG 96
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 184 (69.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 35/74 (47%), Positives = 54/74 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVN 354
++G+++DGR IRV+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 106 (42.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 261
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 184 (69.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 38/87 (43%), Positives = 56/87 (64%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ D LE VFS++G++ VV DRET RSRGFGFVT + + DA+A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 341 LDGQNLDGRAIRVNVA--EDRQRRSSF 365
++G+ +DGR IRV+ A RR +
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRRGGY 93
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 187 (70.9 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 43/147 (29%), Positives = 83/147 (56%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+ ++V N + +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+
Sbjct: 523 TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 581
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+P ++V L E L++ F G + AR+V DRETG S+GFGFV +SE
Sbjct: 582 ----QPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEE 634
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ A A++ +DG + ++ A+ +
Sbjct: 635 DAKAAKEAMEDGEIDGNKVTLDWAKPK 661
Score = 126 (49.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 34/140 (24%), Positives = 67/140 (47%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
SR FG+V + E+ EKA+E+ + G + + K + ++ +R R +
Sbjct: 359 SRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAK 411
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
NLP++V L++VF + V R+V + G+S+G ++ +E + + G
Sbjct: 412 NLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTE 466
Query: 346 LDGRAIRVNVAEDRQRRSSF 365
+DGR+I + ++ + F
Sbjct: 467 IDGRSISLYYTGEKGQNQDF 486
Score = 120 (47.3 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 34/139 (24%), Positives = 68/139 (48%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFR 281
+S+G ++ T +AEK +E +IDGR +++ +G Q R + + +
Sbjct: 440 KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESK 499
Query: 282 IYV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
V NL + L++VF E + V + G+S+G+ F+ +S + +A+ +
Sbjct: 500 TLVLSNLAYSATEETLQEVF-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNS 555
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+ + ++GRAIR+ + R
Sbjct: 556 CNKREIEGRAIRLELQGPR 574
Score = 103 (41.3 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266
+++ +RET S+GFGFV ++ E+A+ A E +IDG +T++ A P+G
Sbjct: 612 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 662
Score = 52 (23.4 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A VEI
Sbjct: 404 DARTLLAKNLPYKVTQDELKEVFEDA--VEI 432
Score = 49 (22.3 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 501 LVLSNLAYSATEETLQEVFEKATFIKVPQ 529
Score = 43 (20.2 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 79 DWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGED 130
D D+EED+D+ + DE E D + E ED
Sbjct: 156 DEEDEEEDEDDFEPAVVKGAAAAAAPASDDEEEEEDEDEDEDEDEDDEEEED 207
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 179 (68.1 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 45/148 (30%), Positives = 73/148 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ + +DGR++ +A R + + P
Sbjct: 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNTTP-HKVDGRVVEPKRAVSR--EDSQRPGAH 101
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 160
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I + G V A +Q +S
Sbjct: 161 KIVIQKYHTVKGHNCEVRKALPKQEMAS 188
Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+P+ E ++++G L +E + L F + G + + V+ D T RSRGFGFVT ++
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E+ DA +DGR + A ED QR
Sbjct: 66 EEV-DAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
Score = 56 (24.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L ++ E L FE+ GT+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTL 40
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 189 (71.6 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 48/141 (34%), Positives = 75/141 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIY 283
SRGFGFV T E A++A+ + ++ R + V + R + E R E F IY
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE--FTNIY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
V NLP +VD L+ +FS+ GK+++ +V+ D +G SR FGFV E A+ ++G
Sbjct: 195 VKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ + GR + A+ R R +
Sbjct: 254 KEVSGRLLYAGRAQKRVERQN 274
Score = 135 (52.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 40/151 (26%), Positives = 74/151 (49%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ ++ +AE+A++ + + G+ + + + +R P
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWS-------QRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G I++ NL +DN L FS G +++ +V D E G SRGFGFV +
Sbjct: 93 LRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETHEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Score = 117 (46.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 35/108 (32%), Positives = 52/108 (48%)
Query: 214 LLQVIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+L V R+ SR FGFV EEA+KAV + ++ GRLL +A R +
Sbjct: 217 MLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL 276
Query: 273 PRVFEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNAR 310
R FE G +YV NL +D+ +L + FS +G + +A+
Sbjct: 277 KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
Score = 54 (24.1 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
++V NLP DVD + L LF + G
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG 215
Score = 43 (20.2 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
Score = 38 (18.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGF 202
+F+ NL +D++ L F G + +V G++GF
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE-HGSRGF 140
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 204 (76.9 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDESLKELFSQFGKTLS 219
Query: 217 VIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + +I G+++ V +A + + R
Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 183 (69.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 40/139 (28%), Positives = 75/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D G+S+GFGFV+ + N A+ ++G+
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 256 ISGKIIFVGRAQKKVERQA 274
Score = 136 (52.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPIRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+ AI ++G L+ R + V + R+ R +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG V
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPV 37
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 204 (76.9 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDESLKELFSQFGKTLS 219
Query: 217 VIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + +I G+++ V +A + + R
Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 183 (69.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 40/139 (28%), Positives = 75/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D G+S+GFGFV+ + N A+ ++G+
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 256 ISGKIIFVGRAQKKVERQA 274
Score = 136 (52.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPIRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+ AI ++G L+ R + V + R+ R +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG V
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPV 37
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 183 (69.5 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 40/139 (28%), Positives = 75/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 109
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D G+S+GFGFV+ + N A+ ++G+
Sbjct: 110 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKE 168
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 169 ISGKIIFVGRAQKKVERQA 187
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 183 (69.5 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 341 LDGQNLDGRAIRVNVA 356
++G+ +DGR IRV+ A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 197 (74.4 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 181 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 240
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 241 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 298
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 299 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 331
Score = 181 (68.8 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 92 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 149
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 150 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 208
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 209 KELNGKQIYVGRAQKKVERQT 229
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 43/144 (29%), Positives = 72/144 (50%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF- 280
T RS G+ +V +AE+A++ + +D V K P R +R P + + G
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVG 54
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++ AI
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 112
Query: 341 LDGQNLDGRAIRVNVAEDRQRRSS 364
++G L+ R + V + R+ R +
Sbjct: 113 MNGMLLNDRKVFVGRFKSRKEREA 136
Score = 44 (20.5 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFG 170
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 197 (74.4 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 183 (69.5 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 43/141 (30%), Positives = 80/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+++F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFG 215
Score = 43 (20.2 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 197 (74.4 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 183 (69.5 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 43/141 (30%), Positives = 80/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+++F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFG 215
Score = 43 (20.2 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 190 (71.9 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 52/162 (32%), Positives = 83/162 (51%)
Query: 214 LLQVIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+L V R+ SR FGFV EEA+KAV + ++ GRLL +A R +
Sbjct: 217 MLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL 276
Query: 273 PRVFEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRG 322
R FE G +YV NL +D+ +L + FS +G + +A+V+ E G S+G
Sbjct: 277 KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKG 334
Query: 323 FGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
FGFV SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 189 (71.6 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 48/141 (34%), Positives = 75/141 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGF-RIY 283
SRGFGFV T E A++A+ + ++ R + V + R + E R E F IY
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE--FTNIY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
V NLP +VD L+ +FS+ GK+++ +V+ D +G SR FGFV E A+ ++G
Sbjct: 195 VKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ + GR + A+ R R +
Sbjct: 254 KEVSGRLLYAGRAQKRVERQN 274
Score = 135 (52.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 40/151 (26%), Positives = 74/151 (49%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ ++ +AE+A++ + + G+ + + + +R P
Sbjct: 40 IRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWS-------QRDPG 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G I++ NL +DN L FS G +++ +V D E G SRGFGFV +
Sbjct: 93 LRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETHEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Score = 54 (24.1 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
++V NLP DVD + L LF + G
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG 215
Score = 43 (20.2 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
Score = 38 (18.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGF 202
+F+ NL +D++ L F G + +V G++GF
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE-HGSRGF 140
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 200 (75.5 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 59/214 (27%), Positives = 102/214 (47%)
Query: 159 DAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLL- 215
D+K L V LP ++ E+L LF G +E ++ + GNQ + + +
Sbjct: 46 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLFEKWRP 105
Query: 216 ---QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+VI + +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 106 LDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA 165
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+
Sbjct: 166 --------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 217
Query: 333 ELNDAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
E +AI L+GQ G I V A + ++++
Sbjct: 218 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 251
Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 316 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 375
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ ++
Sbjct: 376 ASLNGYRLGDRVLQVSFKTNKTHKA 400
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 197 (74.4 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 194 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 253
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 254 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 311
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 312 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 344
Score = 181 (68.8 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 162
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 163 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 221
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 222 KELNGKQIYVGRAQKKVERQT 242
Score = 44 (20.5 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFG 183
Score = 43 (20.2 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 183 (69.5 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 51 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 107
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 108 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 166
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 167 KIVLQKYHTINGHNAEVRKALSRQ 190
Score = 134 (52.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 267 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT SS E++ A+AA ++DGR + A R+
Sbjct: 66 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 99
Score = 48 (22.0 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWG 44
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 203 (76.5 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDESLKELFSQFGKTLS 219
Query: 217 VIYNRE-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + +I G+++ V +A + + R
Sbjct: 220 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 185 (70.2 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 40/139 (28%), Positives = 76/139 (54%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D +G+S+GFGFV+ + N A+ ++G+
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 256 ISGKVIFVGRAQKKVERQA 274
Score = 136 (52.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPIRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+ AI ++G L+ R + V + R+ R +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG V
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPV 37
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 203 (76.5 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 63/218 (28%), Positives = 108/218 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVK-FHFLFGNQGFHMWVCAVFYVSLLQV 217
D K+FVG + E+ A L +A +K F ++ W Y + L V
Sbjct: 165 DRKVFVGR--FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQ--YGAALSV 220
Query: 218 -IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
+ + +SRGFGFV+ E+A+KAV+ + D++G+ + V +A + + R F
Sbjct: 221 KVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKF 280
Query: 277 EP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
E G +YV NL +D+ RL + F+ G + +A+V+ E GRS+GFGFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFV 338
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 181 (68.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 43/141 (30%), Positives = 81/141 (57%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A++ + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL++ F ++G ++ +V+ D + G+SRGFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
++L+G+AI V A+ + R +
Sbjct: 254 KDLNGKAIFVGRAQKKVERQT 274
Score = 140 (54.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 43 (20.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 203 (76.5 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 63/219 (28%), Positives = 110/219 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L +A +K FG + +F Y + +
Sbjct: 165 DRKVFVGR--FKSRKEREAELGARAKEFTNVYIKN---FGEDMDDDKLKDIFSKYGNAMS 219
Query: 217 V-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+ + E +SRGFGFV+ E+A++AV+ + +++G+L+ V +A + + R
Sbjct: 220 IRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +YV NL +D+ RL + FS G + +A+V+ D GRS+GFGF
Sbjct: 280 FEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 188 (71.2 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 44/141 (31%), Positives = 80/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ +L+ +FS++G ++ RV+ D E G+SRGFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ ++G+ I V A+ + R +
Sbjct: 254 KEMNGKLIYVGRAQKKVERQT 274
Score = 142 (55.0 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 42/151 (27%), Positives = 76/151 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ +V +AE+A++ + I GR + + + +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWS-------QRDPS 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 46 (21.3 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG +
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAI 37
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 181 (68.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFG 215
Score = 43 (20.2 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 181 (68.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFG 215
Score = 43 (20.2 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 181 (68.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFG 215
Score = 43 (20.2 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 181 (68.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFG 215
Score = 43 (20.2 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 181 (68.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFG 215
Score = 39 (18.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L D AML+EK
Sbjct: 11 ASLYVGDLHPDATE---AMLYEK 30
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 197 (74.4 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP--- 278
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 279 -------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 181 (68.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 43/141 (30%), Positives = 79/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFG 215
Score = 43 (20.2 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 203 (76.5 bits), Expect = 6.6e-14, P = 6.6e-14
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 205 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDESLKELFSQFGKTLS 259
Query: 217 VIYNRE-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + +I G+++ V +A + + R
Sbjct: 260 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRK 319
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 320 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 377
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 378 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 416
Score = 185 (70.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 40/139 (28%), Positives = 76/139 (54%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 177 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 236
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D +G+S+GFGFV+ + N A+ ++G+
Sbjct: 237 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKE 295
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 296 ISGKVIFVGRAQKKVERQA 314
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 188 (71.2 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 45/144 (31%), Positives = 74/144 (51%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N++ RSR FGFVT S+ +EA+ A+ + +DG + + +A R + P
Sbjct: 41 VVQNQQLKRSRCFGFVTYSSPDEADSAMSA-RPHILDGNNVELKRAVAR--EDAGKPEAL 97
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I++G L +++ L FS+ G V A V+ D+ETG+ RGFGFV +
Sbjct: 98 AKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADK 157
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A+ L ++G + V A +Q
Sbjct: 158 AVV-LKFHMINGHKVEVKKALTKQ 180
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L + + L F ++GK+ + VV +++ RSR FGFVT SS E + A++A
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 341 ----LDGQNLD-GRAI 351
LDG N++ RA+
Sbjct: 71 RPHILDGNNVELKRAV 86
Score = 39 (18.8 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLFVG L + L FE+ G
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYG 34
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 195 (73.7 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 45/147 (30%), Positives = 80/147 (54%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
++ +R+T + RGFGFVT + +K ++ H I G+ + + + PRG+ F
Sbjct: 73 IMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHI--IIGKQVEIKRTIPRGSMSSND---F 127
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+ +I+VG +P VD+ ++ F + G++ +++ D TGRSRGFGFVT SE ++
Sbjct: 128 KTK-KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDH 186
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRS 363
+A + L G + + AE ++ S
Sbjct: 187 LLAKGNRIELSGTQVEIKKAEPKKPNS 213
Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 267 TQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
+QP V G +I+VG L E +A + F ++G++ ++ ++ DR+TG+ RGFGFV
Sbjct: 30 SQPHSGGGVDSAG-KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFV 88
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
T + + ++ I D + G+ + + R SS
Sbjct: 89 TYADSSVVDKVIQ--DNHIIIGKQVEIKRTIPRGSMSS 124
Score = 39 (18.8 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG L + S + F K G +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEI 68
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 181 (68.8 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 31/78 (39%), Positives = 56/78 (71%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YVGNLPW++ + +L+++ SE G+V+ ARV+ ++ TGRSRG+GF+ + E + + L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDE-DAEKFMTGL 63
Query: 342 DGQNLDGRAIRVNVAEDR 359
+G+ ++GR + V+ A +R
Sbjct: 64 NGKEVEGRQLVVSEARER 81
Score = 87 (35.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
+VI + T RSRG+GF+ + E+AEK + + +++GR L V++A R
Sbjct: 33 RVILEKSTGRSRGYGFIEVRD-EDAEKFMTGLNGKEVEGRQLVVSEARER 81
Score = 56 (24.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
L+VGNLP+ + SE+L + + G V A V
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARV 34
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 181 (68.8 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 31/78 (39%), Positives = 56/78 (71%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YVGNLPW++ + +L+++ SE G+V+ ARV+ ++ TGRSRG+GF+ + E + + L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDE-DAEKFMTGL 63
Query: 342 DGQNLDGRAIRVNVAEDR 359
+G+ ++GR + V+ A +R
Sbjct: 64 NGKEVEGRQLVVSEARER 81
Score = 87 (35.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
+VI + T RSRG+GF+ + E+AEK + + +++GR L V++A R
Sbjct: 33 RVILEKSTGRSRGYGFIEVRD-EDAEKFMTGLNGKEVEGRQLVVSEARER 81
Score = 56 (24.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
L+VGNLP+ + SE+L + + G V A V
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARV 34
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 181 (68.8 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 36/87 (41%), Positives = 58/87 (66%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E + LEQ F+++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 341 LDGQNLDGRAIRVNVA--EDRQRRSSF 365
++G+++DGR IRV+ A +RR +
Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERRGGY 92
Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
+S + V+ +RET RSRGFGFVT V++A+ A+ + +DGR + V++A
Sbjct: 31 ISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 181 (68.8 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YVGNLP+ + + ++FSEHG V + R++ D+ TG+ RGFGFV M+S+ +L+ AI+AL
Sbjct: 73 LYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASD-DLDKAISAL 131
Query: 342 DGQNLDGRAIRVNVAEDRQRRS 363
+ R ++V A++R R+
Sbjct: 132 NDTEFQQRTLKVREAKERPERT 153
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 181 (68.8 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YVGNLP+ + + ++FSEHG V + R++ D+ TG+ RGFGFV M+S+ +L+ AI+AL
Sbjct: 73 LYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASD-DLDKAISAL 131
Query: 342 DGQNLDGRAIRVNVAEDRQRRS 363
+ R ++V A++R R+
Sbjct: 132 NDTEFQQRTLKVREAKERPERT 153
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 202 (76.2 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDENLKELFSQFGKTLS 219
Query: 217 VIYNRE-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + +I G+++ V +A + + R
Sbjct: 220 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 186 (70.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 40/139 (28%), Positives = 76/139 (54%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D +G+S+GFGFV+ + N A+ ++G+
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 256 ISGKVIFVGRAQKKVERQA 274
Score = 136 (52.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPIRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+ AI ++G L+ R + V + R+ R +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG V
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPV 37
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 183 (69.5 bits), Expect = 8.7e-14, Sum P(2) = 8.7e-14
Identities = 47/147 (31%), Positives = 77/147 (52%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE------- 277
+S+GFGFV T E A+KAV H I+G++L V +A + + R FE
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296
Query: 278 ---PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETEL 334
PG IY+ NL +D+ +L++ FS G + A+V+ E G+ +GFG V SS +
Sbjct: 297 SRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV--EVGQGKGFGVVCFSSFEDA 354
Query: 335 NDAIAALDGQNLDGRAIRVNVAEDRQR 361
A+ ++G+ + + + V + + R R
Sbjct: 355 TKAVDEMNGRTVGSKPLHVTLGQARCR 381
Score = 137 (53.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 33/138 (23%), Positives = 71/138 (51%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA-PRGTQPERAPRVFEPGFRIYV 284
S+G+ +V ++ A +A+ + ++ R + V + P E R ++V
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFV 203
Query: 285 GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 344
N ++D+ +L+++FS +G + +V+ D +G+S+GFGFV + A+ L G+
Sbjct: 204 KNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Query: 345 NLDGRAIRVNVAEDRQRR 362
+++G+ + V A+ + R
Sbjct: 263 SINGKVLYVGRAQKKIER 280
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 228 GFGFVTMSTVEEAEKAVEMFHRYD-IDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGN 286
G+G+V +AE A+ + +D I+G+ + +QP+ R G I++ N
Sbjct: 60 GYGYVNFRFPADAEWALNTMN-FDLINGKPFRL-----MWSQPDDRLRKSGVG-NIFIKN 112
Query: 287 LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346
L +DN L +FS G +++ +VV D + G S+G+ +V S N AI ++G L
Sbjct: 113 LDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRL 170
Query: 347 DGRAIRV 353
+ R + V
Sbjct: 171 NNRQVYV 177
Score = 52 (23.4 bits), Expect = 8.7e-14, Sum P(2) = 8.7e-14
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV N D+D EKL +F G E +V
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKV 230
Score = 48 (22.0 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
A L+VG+L DV + L F AG + +
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRI 49
Score = 42 (19.8 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
+F+ NL +D+ L LF G +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNI 132
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 185 (70.2 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 49/158 (31%), Positives = 77/158 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER+ PR
Sbjct: 41 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPRE 99
Query: 276 F----EP------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
EP +I+VG +P L++ F+ G V ++YD E R RGFGF
Sbjct: 100 GWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGF 159
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
+T E ++ A+ + ++ G+ + V AE R +S
Sbjct: 160 ITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 196
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 71 RPHTLDGRNID 81
Score = 107 (42.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE 270
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 140 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQ 197
Score = 49 (22.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F + G V
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVV 140
Score = 48 (22.0 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEV 36
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 186 (70.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 46/144 (31%), Positives = 74/144 (51%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N +T RSR FGFVT S VEEA+ A+ + +DG + + +A R + P
Sbjct: 38 VVVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSR--EDSARPGAH 94
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG L +V L + FS+ G V A ++ D+++G+ RGFGFV S + D
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSH-DAAD 153
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A + + G + V A ++
Sbjct: 154 KAAVVKFHPIQGHRVEVKKAVPKE 177
Score = 40 (19.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L L FE GT+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTL 33
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 180 (68.4 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L W + L + FS +G + A VV DR+T RSRGFGFV +SE E + A+ A
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 341 LDGQNLDGRAIRVNVAEDR 359
++ Q DGR IRV+ A +R
Sbjct: 63 MNNQEFDGRIIRVDKASER 81
Score = 112 (44.5 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
V+ +R+T+RSRGFGFV ++ EA+ A+ + + DGR++ V+KA+ R
Sbjct: 33 VVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDKASER 81
Score = 56 (24.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
AKLF+G L + + L F + GT+E A V
Sbjct: 2 AKLFIGGLAWHTTDDVLREGFSRYGTIEEAVV 33
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 180 (68.4 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 31/78 (39%), Positives = 54/78 (69%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+IYVG+L ++V L+ F ++G++ A+++ DRETGRS+GF F+T ++ +A++
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 341 LDGQNLDGRAIRVNVAED 358
+G +L GR IRVN+A +
Sbjct: 79 ANGIDLQGRKIRVNIARE 96
Score = 99 (39.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
++I +RET RS+GF F+T T + A++AV + D+ GR + VN A
Sbjct: 48 KLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIA 94
Score = 65 (27.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
K++VG+L YDV +++L F + G +E A++
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKL 49
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 180 (68.4 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 31/78 (39%), Positives = 54/78 (69%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+IYVG+L ++V L+ F ++G++ A+++ DRETGRS+GF F+T ++ +A++
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 341 LDGQNLDGRAIRVNVAED 358
+G +L GR IRVN+A +
Sbjct: 79 ANGIDLQGRKIRVNIARE 96
Score = 99 (39.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
++I +RET RS+GF F+T T + A++AV + D+ GR + VN A
Sbjct: 48 KLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIA 94
Score = 65 (27.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
K++VG+L YDV +++L F + G +E A++
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKL 49
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 180 (68.4 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
GF +YVGN+P++ + F+ G V N R+VYDRETGR RGF FV S E A+
Sbjct: 5 GFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 339 AALDGQNLDGRAIRVNVA 356
L+G +GR +RVN A
Sbjct: 65 EQLNGVAFNGRNLRVNYA 82
Score = 109 (43.4 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 205 WVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
+ AV +V+ ++++Y+RET R RGF FV S A++AVE + +GR L VN A
Sbjct: 25 YFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 184 (69.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 108
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 167
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 168 KIVLQKHHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 267 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 48 (22.0 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWG 45
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 185 (70.2 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 43/147 (29%), Positives = 83/147 (56%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+ ++V N + +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+
Sbjct: 512 TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 570
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+P ++V L + L++ F G V AR+V DRETG S+GFGFV +SE
Sbjct: 571 ----QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEE 623
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ A A++ +DG + ++ A+ +
Sbjct: 624 DAKAAKEAMEDGEIDGNKVTLDWAKPK 650
Score = 120 (47.3 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 32/140 (22%), Positives = 67/140 (47%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
+R FG+V + E+ EKA+E+ + G + + K + ++ ER R +
Sbjct: 348 TRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAK 400
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
NLP++V L++VF + ++ R+V + G+S+G ++ +E + G
Sbjct: 401 NLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 455
Query: 346 LDGRAIRVNVAEDRQRRSSF 365
+DGR+I + ++ + +
Sbjct: 456 IDGRSISLYYTGEKGQNQDY 475
Score = 119 (46.9 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 34/139 (24%), Positives = 67/139 (48%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFR 281
+S+G ++ T +AEK E +IDGR +++ +G Q R + + +
Sbjct: 429 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESK 488
Query: 282 IYV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
V NL + L++VF E + V + G+S+G+ F+ +S + +A+ +
Sbjct: 489 TLVLSNLSYSATEETLQEVF-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNS 544
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+ + ++GRAIR+ + R
Sbjct: 545 CNKREIEGRAIRLELQGPR 563
Score = 103 (41.3 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266
+++ +RET S+GFGFV ++ E+A+ A E +IDG +T++ A P+G
Sbjct: 601 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 651
Score = 54 (24.1 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A + +
Sbjct: 393 DARTLLAKNLPYKVTQDELKEVFEDAAEIRL 423
Score = 49 (22.3 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 490 LVLSNLSYSATEETLQEVFEKATFIKVPQ 518
Score = 39 (18.8 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 82 DQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVE 134
D++ED+D I DE + + D E + E+ +E
Sbjct: 160 DEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDEDDDEEDDSEEEAME 212
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 185 (70.2 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 43/147 (29%), Positives = 83/147 (56%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+ ++V N + +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+
Sbjct: 515 TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 573
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+P ++V L + L++ F G V AR+V DRETG S+GFGFV +SE
Sbjct: 574 ----QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEE 626
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ A A++ +DG + ++ A+ +
Sbjct: 627 DAKAAKEAMEDGEIDGNKVTLDWAKPK 653
Score = 120 (47.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 34/139 (24%), Positives = 68/139 (48%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFR 281
+S+G ++ T +AEK E +IDGR +++ +G +Q R + + +
Sbjct: 432 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESK 491
Query: 282 IYV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
V NL + L++VF E + V + G+S+G+ F+ +S + +A+ +
Sbjct: 492 TLVLSNLSYSATEETLQEVF-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNS 547
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+ + ++GRAIR+ + R
Sbjct: 548 CNKREIEGRAIRLELQGPR 566
Score = 120 (47.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 33/126 (26%), Positives = 61/126 (48%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
SR FG+V + E+ EKA+E+ + G + + K + ++ +R R +
Sbjct: 351 SRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAK 403
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
NLP++V L++VF + V R+V + G+S+G ++ +E + G
Sbjct: 404 NLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 458
Query: 346 LDGRAI 351
+DGR+I
Sbjct: 459 IDGRSI 464
Score = 103 (41.3 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266
+++ +RET S+GFGFV ++ E+A+ A E +IDG +T++ A P+G
Sbjct: 604 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 654
Score = 52 (23.4 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A VEI
Sbjct: 396 DARTLLAKNLPYKVTQDELKEVFEDA--VEI 424
Score = 49 (22.3 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 493 LVLSNLSYSATEETLQEVFEKATFIKVPQ 521
Score = 41 (19.5 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 75 AQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVE 134
++ D D++ED+D T+ D+ + + D E E +D+ E
Sbjct: 153 SEEEDEEDEDEDEDEFEPTVMKAAAAAPASDEEEDDEEDDDEDDDEEDEDEDE-DDSEEE 211
Query: 135 AGE 137
A E
Sbjct: 212 AME 214
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 185 (70.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 48/155 (30%), Positives = 85/155 (54%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ L+++ + T RSRGFGF++ ++ V+ H +DG+++ +A PR Q +
Sbjct: 185 VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHI--LDGKVIDPKRAIPRDEQDKT 242
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+I+VG + +V E+ FS+ G +++A+++ D++TG+SRGFGFVT S
Sbjct: 243 G--------KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 294
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDR--QRRSS 364
+ D + + R I + AE R Q++SS
Sbjct: 295 DAV-DRVCQNKFIDFKDRKIEIKRAEPRHMQQKSS 328
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/90 (30%), Positives = 52/90 (57%)
Query: 267 TQPERAPR-VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T+ ER+ + + ++++G L W+ L + F ++G V + +++ D TGRSRGFGF
Sbjct: 145 TKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGF 204
Query: 326 VTMSSETELNDAIAA---LDGQNLDG-RAI 351
++ + +++ + LDG+ +D RAI
Sbjct: 205 LSFEKPSSVDEVVKTQHILDGKVIDPKRAI 234
Score = 55 (24.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+F+G L +D + L F K GTV
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTV 185
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 201 (75.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDENLKELFSQFGKTLS 219
Query: 217 VIYNRE-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + +I G+++ V +A + + R
Sbjct: 220 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 185 (70.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 40/139 (28%), Positives = 76/139 (54%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D +G+S+GFGFV+ + N A+ ++G+
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 256 ITGKVIFVGRAQKKVERQA 274
Score = 136 (52.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPIRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+ AI ++G L+ R + V + R+ R +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG V
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPV 37
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 183 (69.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 40 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 96
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 155
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 156 KIVLQKYHTINGHNAEVRKALSRQ 179
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L +E L + + GK+ + V+ D + RSRGFGFVT SS E++ A+AA
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
++DGR + A R+
Sbjct: 70 RP-HSIDGRVVEPKRAVARE 88
Score = 48 (22.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWG 33
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 195 (73.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 47/154 (30%), Positives = 85/154 (55%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG-- 279
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ 285
Query: 280 --------FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E A+ ++G+ + + + V +A+ ++ R ++
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAY 377
Score = 183 (69.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 43/141 (30%), Positives = 80/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFE-PGFRIY 283
S+G+GFV T E AE+A++ + ++GR + V + R + E R E P +Y
Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN--VY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 123 (48.4 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 41/144 (28%), Positives = 68/144 (47%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF- 280
T S + +V ++AE A++ + +D V K P R +R P + + G
Sbjct: 48 TSGSSNYAYVNFQHTKDAEHALDTMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVG 99
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
I+V NL ++N L S G +++ VV D E G S+G+GFV + AI
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKK 157
Query: 341 LDGQNLDGRAIRVNVAEDRQRRSS 364
++G L+GR + V + R+ R +
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFG 215
Score = 43 (20.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 185 (70.2 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 43/147 (29%), Positives = 83/147 (56%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+ ++V N + +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+
Sbjct: 510 TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 568
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+P ++V L + L++ F G V AR+V DRETG S+GFGFV +SE
Sbjct: 569 ----QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEE 621
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ A A++ +DG + ++ A+ +
Sbjct: 622 DAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 120 (47.3 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 32/140 (22%), Positives = 67/140 (47%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
+R FG+V + E+ EKA+E+ + G + + K + ++ ER R +
Sbjct: 346 TRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAK 398
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
NLP++V L++VF + ++ R+V + G+S+G ++ +E + G
Sbjct: 399 NLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 453
Query: 346 LDGRAIRVNVAEDRQRRSSF 365
+DGR+I + ++ + +
Sbjct: 454 IDGRSISLYYTGEKGQNQDY 473
Score = 119 (46.9 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 34/139 (24%), Positives = 67/139 (48%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFR 281
+S+G ++ T +AEK E +IDGR +++ +G Q R + + +
Sbjct: 427 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESK 486
Query: 282 IYV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
V NL + L++VF E + V + G+S+G+ F+ +S + +A+ +
Sbjct: 487 TLVLSNLSYSATEETLQEVF-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNS 542
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+ + ++GRAIR+ + R
Sbjct: 543 CNKREIEGRAIRLELQGPR 561
Score = 54 (24.1 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A + +
Sbjct: 391 DARTLLAKNLPYKVTQDELKEVFEDAAEIRL 421
Score = 49 (22.3 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 488 LVLSNLSYSATEETLQEVFEKATFIKVPQ 516
Score = 38 (18.4 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 82 DQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVE 134
D++ED+D I DE + + D E + E+ +E
Sbjct: 160 DEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAME 212
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 184 (69.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 44/144 (30%), Positives = 73/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 40 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 96
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F+E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 155
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 156 KIVLQKYHTINGHNAEVRKALSRQ 179
Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L ++ L + + GK+ + V+ D + RSRGFGFVT SS E++ A+AA
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
++DGR + A R+
Sbjct: 70 RP-HSIDGRVVEPKRAVARE 88
Score = 46 (21.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L + E L +E+ G
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWG 33
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 183 (69.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 51 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 107
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 108 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 166
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 167 KIVLQKYHTINGHNAEVRKALSRQ 190
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 267 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT SS E++ A+AA ++DGR + A R+
Sbjct: 66 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 99
Score = 48 (22.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWG 44
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 183 (69.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 108
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 167
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 168 KIVLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 267 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 48 (22.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWG 45
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 183 (69.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 108
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 167
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 168 KIVLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 267 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 48 (22.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWG 45
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 183 (69.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 108
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 167
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 168 KIVLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 267 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 48 (22.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWG 45
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 176 (67.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 47/147 (31%), Positives = 76/147 (51%)
Query: 217 VIYNRETDRSRGFGFVTMS---TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAP 273
V+ + T RSRGFGF+T S ++EA+K+ H+ IDGR++ +A PR Q +P
Sbjct: 62 VMKDPRTKRSRGFGFITYSHSSMIDEAQKSRP--HK--IDGRVVEPKRAVPR--QDIDSP 115
Query: 274 RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+++VG L + D + F G +V+ +V D+ETG+ RGF FV
Sbjct: 116 NAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDP 175
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQ 360
++ + Q L+G+ + V A +Q
Sbjct: 176 VDKVVLQKQHQ-LNGKMVDVKKALPKQ 201
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L + + L+ F + G +V+ V+ D T RSRGFGF+T S + +++A +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
+DGR + A RQ
Sbjct: 92 RP-HKIDGRVVEPKRAVPRQ 110
Score = 58 (25.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGT-VEIAEVK 192
KLF+G L Y E L FEK G V++ +K
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMK 64
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 185 (70.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 48/157 (30%), Positives = 76/157 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER P+
Sbjct: 31 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKE 89
Query: 276 -FEPGFR--------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
++ G R I+VG +P L + F + G V ++YD E R RGFGF+
Sbjct: 90 GWQKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 149
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
T E ++ A+ + ++ G+ + V AE R +S
Sbjct: 150 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 185
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 61 RPHTLDGRNID 71
Score = 108 (43.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 129 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQT 187
Query: 272 A--PRVFEPGFRI 282
P + G RI
Sbjct: 188 PGPPGASQWGSRI 200
Score = 53 (23.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F+K G V
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVV 129
Score = 48 (22.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEV 26
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 178 (67.7 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 39/129 (30%), Positives = 69/129 (53%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 125
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 126 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 336 DAIAALDGQ 344
+AI L+GQ
Sbjct: 181 EAIKGLNGQ 189
Score = 106 (42.4 bits), Expect = 0.00090, P = 0.00090
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 342 DGQNLDGRAIRVNVA 356
+G L + I+V+ A
Sbjct: 101 NGLRLQTKTIKVSYA 115
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 182 (69.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 48 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHTIDGRVVEPKRAVAR--EESGKPGAH 104
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 105 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 163
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 164 KIVLQKYHTINGHNAEVRKALSRQ 187
Score = 131 (51.2 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 264 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF 323
PRG + E R E ++++G L +E L + + GK+ + V+ D + RSRGF
Sbjct: 2 PRGDR-ESDWREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF 60
Query: 324 GFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
GFVT SS E++ A+AA +DGR + A R+
Sbjct: 61 GFVTFSSMAEVDAAMAARP-HTIDGRVVEPKRAVARE 96
Score = 48 (22.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWG 41
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 182 (69.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 43/138 (31%), Positives = 78/138 (56%)
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 279
+R T+ + +GF+ + E+A+ A+++ + + G+ + VNKA+ Q +++ + G
Sbjct: 59 DRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKAS----QDKKS---LDVG 111
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVV-NARVVYDRETGRSRGFGFVTMSSETELNDAI 338
+++GNL +VD L FS G + N +++ D +TG SRGFGF++ S + AI
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
Query: 339 AALDGQNLDGRAIRVNVA 356
++ GQ L R I V+ A
Sbjct: 172 ESMTGQYLSNRQITVSYA 189
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YVG L ++ L ++F + G VVN V DR T + +GF+ SE + + AI L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 342 DGQNLDGRAIRVNVA-EDRQ 360
+ L G+ IRVN A +D++
Sbjct: 87 NMIKLHGKPIRVNKASQDKK 106
Score = 49 (22.3 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA ++VG L + E L LF +AG V
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPV 51
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 186 (70.5 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 110 (43.8 bits), Expect = 0.00082, P = 0.00082
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 187 (70.9 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 46/145 (31%), Positives = 75/145 (51%)
Query: 218 IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE 277
I N + + F+ T E A+ A+ + +D + VN A E
Sbjct: 111 ILNDKNKAGFNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEE 170
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P F I+VG+L EV++ L FS+ + A V++D +T RSRG+GFVT ++++ A
Sbjct: 171 PLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELA 230
Query: 338 IAALDGQNLDGRAIRVNVAEDRQRR 362
+ ++G+ L GRAIR N A +Q++
Sbjct: 231 LQTMNGEWLCGRAIRCNWASHKQQQ 255
Score = 86 (35.3 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 211 YVSLLQ--VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268
+ SL Q V+++ +T RSRG+GFVT +AE A++ + + GR + N A+ + Q
Sbjct: 196 FESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQ 255
Query: 269 PER 271
++
Sbjct: 256 QQQ 258
Score = 58 (25.5 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+Y+GN+ L + G +V+ + + E RG FV + AI L
Sbjct: 414 VYLGNIAHFTQQQELIPLLQNFGFIVDFK--FHPE----RGCAFVKYDTHERAALAIIQL 467
Query: 342 DGQNLDGRAIRVNVAEDR 359
G NL+GR ++ ++R
Sbjct: 468 AGFNLNGRPLKCGWGKER 485
Score = 49 (22.3 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
L+VGNLP E + LF G
Sbjct: 81 LYVGNLPKSASEETIQELFSVGG 103
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 179 (68.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 47/145 (32%), Positives = 75/145 (51%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ +VI++ D + FV S +A +A++ ++ + R + VN A G Q +
Sbjct: 72 VTKTKVIFDGSNDP---YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSK 128
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
F ++VG+L EVDN +L + F G V +A+V+ D T +S+G+GFV+
Sbjct: 129 IDTTRH--FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKR 186
Query: 332 TELNDAIAALDGQNLDGRAIRVNVA 356
E AI ++GQ L R IR N A
Sbjct: 187 EEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 122 (48.0 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 37/153 (24%), Positives = 70/153 (45%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
VS +VI + T +S+G+GFV+ EEAE+A+E + + R + N A + E+
Sbjct: 161 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 220
Query: 272 APRVFEPGF------------RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR 319
E + +YVGN+ + + Q F+ G++ R+ +
Sbjct: 221 PSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIF------K 273
Query: 320 SRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352
+G+ FV ++ AI ++ Q++ G+ +R
Sbjct: 274 MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 306
Score = 59 (25.8 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FVG+L +VD++KL F+ G V A+V
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKV 166
Score = 55 (24.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKF 193
L+VGNL V + +A LF + G+V +V F
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIF 79
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 189 (71.6 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 48/153 (31%), Positives = 81/153 (52%)
Query: 211 YVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE 270
+V +++I ++ + +GFV A++A++ + + + VN A T
Sbjct: 110 HVQNVKIIPDKNA-KGYNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSAT 168
Query: 271 RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
+ F I+VG+L EV++ L Q FS G V ARV++D +TGRSRG+GFV
Sbjct: 169 KEDT--SNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRD 226
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
++ A++++DG+ L RAIR N A + + S
Sbjct: 227 RSDAEKALSSMDGEWLGSRAIRCNWANQKGQPS 259
Score = 45 (20.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
L+VG L V + L +FE G V+ ++
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKI 116
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 177 (67.4 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 39/87 (44%), Positives = 54/87 (62%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
E G +++VG L + D LE FS G + VV DRET RSRGFGF+T ++ +D
Sbjct: 4 EEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRS 363
A+ A++G++LDGR IRV+ A R S
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGS 89
Score = 106 (42.4 bits), Expect = 0.00018, P = 0.00018
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA--APRGTQ 268
+S + V+ +RET RSRGFGF+T + E A A+ + +DGR + V+ A + RG++
Sbjct: 32 ISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSR 90
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 177 (67.4 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 38/76 (50%), Positives = 52/76 (68%)
Query: 281 RIYVGNL-PWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
R+YVGNL P D+ L + FS +G VV+A V+ DR T RSRGFGFVT SS +E A++
Sbjct: 4 RVYVGNLSPTTTDDM-LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 340 ALDGQNLDGRAIRVNV 355
+DG+ L+GR + V +
Sbjct: 63 GMDGKELNGRRVSVKL 78
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
V+ +R TDRSRGFGFVT S+ EAE AV +++GR ++V
Sbjct: 34 VMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSV 76
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 198 (74.8 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 66/219 (30%), Positives = 107/219 (48%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG+ + E+ A + KA VE V FG + +F + L
Sbjct: 165 DRKVFVGH--FKSRKEREAEMGAKA--VEFTNVYIKN-FGEDIDSEKLKNIFTEFGKTLS 219
Query: 217 V-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V + E RSRGFGFV +A +AV + +++GR+L V +A R + R
Sbjct: 220 VCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +YV NL +D+ +L + F+ +G + +A+V+ D G SRGFGF
Sbjct: 280 FEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG--GHSRGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 187 (70.9 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 45/139 (32%), Positives = 76/139 (54%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E A +A+E + ++ R + V R + E + E F +Y
Sbjct: 137 SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ +L+ +F+E GK ++ V+ D E GRSRGFGFV + + A+ ++G
Sbjct: 195 IKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRR 362
+ L+GR + V A+ R R
Sbjct: 254 KELNGRVLYVGRAQKRLER 272
Score = 142 (55.0 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 40/143 (27%), Positives = 72/143 (50%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGF-R 281
T RS G+ ++ +AE A++ + I GR + + + +R P + + G
Sbjct: 48 TRRSLGYAYINFQQPADAECALDTMNYEVIKGRPIRIMWS-------QRDPGLRKSGVGN 100
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
I++ N+ +DN L FS G +++ +VV D E G S+G+GFV ++ N AI +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAANRAIETM 158
Query: 342 DGQNLDGRAIRVNVAEDRQRRSS 364
+G L+ R + V + R+ R +
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREA 181
Score = 46 (21.3 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG +
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQI 37
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 189 (71.6 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 43/156 (27%), Positives = 80/156 (51%)
Query: 205 WVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264
+ C + V+ + T RSRGFGF+T + V +K + H +++D + + A P
Sbjct: 40 YFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQPH-HELDSKTIDPKVAFP 98
Query: 265 RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFG 324
R QP+ R +I+VG L ++Q F + GKV +A +++D+ T R RGFG
Sbjct: 99 RRAQPKMVTRTK----KIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFG 154
Query: 325 FVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
FVT +E ++ + + + ++ + + A+ ++
Sbjct: 155 FVTFENE-DIVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+PG ++++G L W+ L F + G++ V+ D T RSRGFGF+T + + + D
Sbjct: 19 DPG-KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSV-D 76
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
+ A LD + I VA R+
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRR 100
Score = 105 (42.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 31/110 (28%), Positives = 54/110 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
+++++ T+R RGFGFVT + EK E+ H ++I+ +++ KA P+ +F
Sbjct: 141 LMFDKTTNRHRGFGFVTFENEDIVEKVCEI-HFHEINNKMVECKKAQPKEV-------MF 192
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE-TGRSRGFGF 325
PG R +LP+ +D L + +V Y R TG S + +
Sbjct: 193 PPGTRGRARSLPYTMDAFMLGMGMLSYPNIV---ATYGRGYTGFSPSYSY 239
Score = 51 (23.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKF 193
K+FVG L E + FE+ G VE A + F
Sbjct: 111 KIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMF 143
Score = 40 (19.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+F+G L + + L F K G +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEI 47
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 185 (70.2 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 47/143 (32%), Positives = 76/143 (53%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGF+T + + H Y +DG+++ +A PR Q E+ ++F
Sbjct: 141 VMRDSATGRSRGFGFLTFKDPKTVNTVMVKEH-Y-LDGKIIDPKRAIPRDEQ-EKTSKIF 197
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
VG + E +Q F + G+V++A ++ D++TGR RGFGFVT SE +
Sbjct: 198 -------VGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEA 250
Query: 337 AIAALDGQNLDGRAIRVNVAEDR 359
A++ + G+ I V A+ R
Sbjct: 251 ALSR--PLEILGKTIEVKKAQPR 271
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/104 (31%), Positives = 54/104 (51%)
Query: 264 PRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF 323
P G + + E G ++++G L WE + L++ FS+ G+V V+ D TGRSRGF
Sbjct: 95 PVGEPEPQGTGIKEDG-KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGF 153
Query: 324 GFVTMSSETELNDAIAA---LDGQNLDGRAIRVNVAEDRQRRSS 364
GF+T +N + LDG+ +D + + D Q ++S
Sbjct: 154 GFLTFKDPKTVNTVMVKEHYLDGKIIDPKRA---IPRDEQEKTS 194
Score = 52 (23.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFG-NQGF 202
D K+F+G L ++ + L F + G V+ V G ++GF
Sbjct: 109 DGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGF 153
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 181 (68.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 50/154 (32%), Positives = 77/154 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP--ERAPR 274
++ +R T R+RGFGFV + AE + + +++IDGRL+ KA PR Q R+
Sbjct: 37 ILKDRTTGRARGFGFVVFADPAVAE--IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNS 94
Query: 275 VF---EPGF-----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
PG +I+VG LP V + + F + G + V+YD T R RGFGF+
Sbjct: 95 SSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFI 154
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
T SE E + + L+G+ + V A ++
Sbjct: 155 TYDSE-EAVEKVLLKTFHELNGKMVEVKRAVPKE 187
Score = 146 (56.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G + W+ + RL++ FS G+V+ A ++ DR TGR+RGFGFV + I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE--IVI 64
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+ N+DGR + A R
Sbjct: 65 TEKHNIDGRLVEAKKAVPR 83
Score = 106 (42.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAV-EMFHRYDIDGRLLTVNKAAPRGTQP--ERAP 273
V+Y+ T R RGFGF+T + E EK + + FH +++G+++ V +A P+ P R+P
Sbjct: 139 VMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH--ELNGKMVEVKRAVPKELSPGPSRSP 196
Score = 55 (24.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
+ KLF+G + +D + E+L F G V
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEV 32
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 181 (68.8 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 108
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GK+ ++ DR++G+ RGFGFVT + D
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV-D 167
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 168 KIFLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 267 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 48 (22.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWG 45
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 157 (60.3 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 45/147 (30%), Positives = 70/147 (47%)
Query: 218 IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ-------PE 270
I N S+G + ST EEA A++ GRL+ + + + + P
Sbjct: 108 ILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPS 167
Query: 271 RAP--RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTM 328
+ + EP +++VGNLP+ V L+ +F + G V+ A + ++E GRSRG G V M
Sbjct: 168 ASSNGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVM 226
Query: 329 SSETELNDAIAALDGQNLDGRAIRVNV 355
SS E AI L + GR + V +
Sbjct: 227 SSMKEAMHAIQMLHNTDFMGRTLEVRL 253
Score = 156 (60.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
IYVGNLPW + L +F++ G V+ AR+ Y+ TGRS+GFG V +E + +I L
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 370
Query: 342 DGQNLDGRAIRVNVA 356
+G GR ++++ A
Sbjct: 371 NGYRYGGRPLQLSYA 385
Score = 84 (34.6 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 21/66 (31%), Positives = 41/66 (62%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSL--LQ 216
D +LFVGNLPY+V + L LF +AG+V A+++ + ++G + V + ++ +Q
Sbjct: 178 DRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQ 237
Query: 217 VIYNRE 222
+++N +
Sbjct: 238 MLHNTD 243
Score = 42 (19.8 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+ +++VGNL Y V +L + G V E+
Sbjct: 76 ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI 108
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 183 (69.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 48/157 (30%), Positives = 76/157 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER P+
Sbjct: 31 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKE 89
Query: 276 -FEPGFR--------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
++ G R I+VG +P L + F + G V ++YD E R RGFGF+
Sbjct: 90 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 149
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
T E ++ A+ + ++ G+ + V AE R +S
Sbjct: 150 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 185
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 61 RPHTLDGRNID 71
Score = 111 (44.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 129 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQ- 186
Query: 272 APRVFEPG 279
AP +PG
Sbjct: 187 APG--QPG 192
Score = 53 (23.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F+K G V
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVV 129
Score = 48 (22.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEV 26
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 193 (73.0 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 43/147 (29%), Positives = 80/147 (54%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
++ +R T + RGFGF+T + +K +E H I+G+ + + + P+G ++ +
Sbjct: 50 IMRDRHTGQPRGFGFITFADPSVVDKVIEDTHV--INGKQVEIKRTIPKGAGGNQSKDIK 107
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG +P V L+ F+++G VV +V+ D ET RSRGFGFV SE +++
Sbjct: 108 TK--KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRS 363
++ G +D +V + + ++S
Sbjct: 166 LLSK--GNMIDMADTQVEIKKAEPKKS 190
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 183 (69.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 45/144 (31%), Positives = 74/144 (51%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N +T RSR FGFVT S VEEA+ A+ + +DG + + +A R + P
Sbjct: 38 VVVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSR--EDSARPGAH 94
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG L +V L + FS+ G V A ++ D+++G+ RGFGFV + + D
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH-DAAD 153
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A + + G + V A ++
Sbjct: 154 KAAVVKFHPIQGHRVEVKKAVPKE 177
Score = 40 (19.1 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L L FE GT+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTL 33
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 177 (67.4 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 45/148 (30%), Positives = 72/148 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT +TVEE + A+ +DGR++ +A R + + P
Sbjct: 53 VVMDPNTKRSRGFGFVTYTTVEEVDAAMNA-RPQKMDGRVVEPKRAVSR--EDSQRPGAH 109
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG + + + L F ++GK+ ++ DR +G+ RGF FVT + D
Sbjct: 110 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV-D 168
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRSS 364
I +G V A +Q +S
Sbjct: 169 KIVIQKYHTGNGHNCEVRKALSKQEMAS 196
Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 271 RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
++P+ E ++++G L +E + L F + G + + VV D T RSRGFGFVT ++
Sbjct: 14 QSPKELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTT 72
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVA---EDRQR 361
E++ A+ A Q +DGR + A ED QR
Sbjct: 73 VEEVDAAMNARP-QKMDGRVVEPKRAVSREDSQR 105
Score = 50 (22.7 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L FE+ G
Sbjct: 24 KLFIGGLSFETTDESLRSHFEQWG 47
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 176 (67.0 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 42/138 (30%), Positives = 75/138 (54%)
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 279
+R T + +G+GFV + E+A+ A+++ + + G+ + VNKA+ + G
Sbjct: 4 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKN-------LDVG 56
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAI 338
I++GNL E+D L FS G ++ +++ D +TG S+G+ F+ +S + AI
Sbjct: 57 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 116
Query: 339 AALDGQNLDGRAIRVNVA 356
A++GQ L R I V+ A
Sbjct: 117 EAMNGQYLCNRPITVSYA 134
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 183 (69.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 48/157 (30%), Positives = 76/157 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER P+
Sbjct: 41 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKE 99
Query: 276 -FEPGFR--------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
++ G R I+VG +P L + F + G V ++YD E R RGFGF+
Sbjct: 100 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
T E ++ A+ + ++ G+ + V AE R +S
Sbjct: 160 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 195
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 71 RPHTLDGRNID 81
Score = 111 (44.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQ- 196
Query: 272 APRVFEPG 279
AP +PG
Sbjct: 197 APG--QPG 202
Score = 53 (23.7 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F+K G V
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVV 139
Score = 48 (22.0 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEV 36
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 183 (69.5 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 48/157 (30%), Positives = 76/157 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER P+
Sbjct: 41 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKE 99
Query: 276 -FEPGFR--------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
++ G R I+VG +P L + F + G V ++YD E R RGFGF+
Sbjct: 100 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
T E ++ A+ + ++ G+ + V AE R +S
Sbjct: 160 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 195
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 71 RPHTLDGRNID 81
Score = 111 (44.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQ- 196
Query: 272 APRVFEPG 279
AP +PG
Sbjct: 197 APG--QPG 202
Score = 53 (23.7 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F+K G V
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVV 139
Score = 48 (22.0 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEV 36
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 183 (69.5 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 48/157 (30%), Positives = 76/157 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER P+
Sbjct: 41 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKE 99
Query: 276 -FEPGFR--------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
++ G R I+VG +P L + F + G V ++YD E R RGFGF+
Sbjct: 100 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
T E ++ A+ + ++ G+ + V AE R +S
Sbjct: 160 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 195
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 71 RPHTLDGRNID 81
Score = 111 (44.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQ- 196
Query: 272 APRVFEPG 279
AP +PG
Sbjct: 197 APG--QPG 202
Score = 53 (23.7 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F+K G V
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVV 139
Score = 48 (22.0 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEV 36
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 183 (69.5 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 45/144 (31%), Positives = 74/144 (51%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N +T RSR FGFVT S VEEA+ A+ + +DG + + +A R + P
Sbjct: 43 VVVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSR--EDSARPGAH 99
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG L +V L + FS+ G V A ++ D+++G+ RGFGFV + + D
Sbjct: 100 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH-DAAD 158
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A + + G + V A ++
Sbjct: 159 KAAVVKFHPIQGHRVEVKKAVPKE 182
Score = 40 (19.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L L FE GT+
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTL 38
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 183 (69.5 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 45/144 (31%), Positives = 74/144 (51%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N +T RSR FGFVT S VEEA+ A+ + +DG + + +A R + P
Sbjct: 38 VVVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSR--EDSARPGAH 94
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG L +V L + FS+ G V A ++ D+++G+ RGFGFV + + D
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH-DAAD 153
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A + + G + V A ++
Sbjct: 154 KAAVVKFHPIQGHRVEVKKAVPKE 177
Score = 40 (19.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L L FE GT+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTL 33
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 197 (74.4 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 61/219 (27%), Positives = 110/219 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A + +A +K FG + +F Y L
Sbjct: 165 DRKVFVGR--FKSRKEREAEMGARAKEFTNVYIKN---FGEDMDDEKLKEIFCKYGPALS 219
Query: 217 V-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+ + ++ +S+GFGFV+ E+A++AV+ + +++G+ + V +A +G + R
Sbjct: 220 IRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 179 (68.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 40/141 (28%), Positives = 81/141 (57%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ +L+++F ++G ++ RV+ D ++G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ ++G+ + V A+ + R +
Sbjct: 254 KEMNGKQVYVGRAQKKGERQT 274
Score = 141 (54.7 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 42/151 (27%), Positives = 75/151 (49%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ +V +AE+A++ + I GR + + + +R P
Sbjct: 40 IRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWS-------QRDPS 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV +
Sbjct: 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 43 (20.2 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 185 (70.2 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 43/147 (29%), Positives = 83/147 (56%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+ ++V N + +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+
Sbjct: 511 TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 569
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+P ++V L + L++ F G V AR+V DRETG S+GFGFV +SE
Sbjct: 570 ----QPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEE 622
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ A A++ +DG + ++ A+ +
Sbjct: 623 DAKAAKEAMEDGEIDGNKVTLDWAKPK 649
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 32/140 (22%), Positives = 67/140 (47%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
+R FG+V + E+ EKA+E+ + G + + K + ++ ER R +
Sbjct: 347 TRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAK 399
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
NLP++V L++VF + ++ R+V + G+S+G ++ +E + G
Sbjct: 400 NLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 454
Query: 346 LDGRAIRVNVAEDRQRRSSF 365
+DGR+I + ++ + +
Sbjct: 455 IDGRSISLYYTGEKGQNQDY 474
Score = 119 (46.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 34/139 (24%), Positives = 67/139 (48%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFR 281
+S+G ++ T +AEK E +IDGR +++ +G Q R + + +
Sbjct: 428 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESK 487
Query: 282 IYV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
V NL + L++VF E + V + G+S+G+ F+ +S + +A+ +
Sbjct: 488 TLVLSNLSYSATEETLQEVF-EKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNS 543
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+ + ++GRAIR+ + R
Sbjct: 544 CNKREIEGRAIRLELQGPR 562
Score = 54 (24.1 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A + +
Sbjct: 392 DARTLLAKNLPYKVTQDELKEVFEDAAEIRL 422
Score = 49 (22.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 489 LVLSNLSYSATEETLQEVFEKATFIKVPQ 517
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 175 (66.7 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L ++ LE FS++G + N V +RET RSRGFGFVT + + DA+
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 66 MNGKSVDGRTIRVDEA 81
Score = 115 (45.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266
++ + V NRET+RSRGFGFVT ++A+ A+E + +DGR + V++A G
Sbjct: 31 ITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSVDGRTIRVDEAGKGG 85
Score = 56 (24.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
+ KLF+G L +D + L F K G +
Sbjct: 4 EGKLFIGGLSFDTTEQSLEDAFSKYGVI 31
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 175 (66.7 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
E G +++VG L + D LE FS G + VV DRET RSRGFGF+T ++ +D
Sbjct: 4 EEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 337 AIAALDGQNLDGRAIRVNVA 356
A+ A++G++LDGR IRV+ A
Sbjct: 63 AMRAMNGESLDGRQIRVDHA 82
Score = 110 (43.8 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA--APRGTQ 268
+S + V+ +RET RSRGFGF+T + E A A+ + +DGR + V+ A + RGT+
Sbjct: 32 ISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGTR 90
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 183 (69.5 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 45/144 (31%), Positives = 74/144 (51%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N +T RSR FGFVT S VEEA+ A+ + +DG + + +A R + P
Sbjct: 43 VVVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSR--EDSARPGAH 99
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG L +V L + FS+ G V A ++ D+++G+ RGFGFV + + D
Sbjct: 100 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH-DAAD 158
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A + + G + V A ++
Sbjct: 159 KAAVVKFHPIQGHRVEVKKAVPKE 182
Score = 40 (19.1 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLF+G L L FE GT+
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTL 38
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 196 (74.1 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 63/219 (28%), Positives = 108/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 94 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDENLRELFSQFGKTLS 148
Query: 217 VIYNRE-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + ++ G+ + V +A + + R
Sbjct: 149 VKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRK 208
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 209 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 266
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 267 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 305
Score = 182 (69.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 40/139 (28%), Positives = 75/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A KA+E + ++ R + V + R + + +Y+
Sbjct: 66 SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 125
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L ++FS+ GK ++ +V+ D +G+S+GFGFV+ + N A+ ++G+
Sbjct: 126 NFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKE 184
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G++I V A+ + R +
Sbjct: 185 MSGKSIFVGRAQKKVERQA 203
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 270 ERAPRVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTM 328
+R P + + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV
Sbjct: 17 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHF 74
Query: 329 SSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
++ N AI ++G L+ R + V + R+ R +
Sbjct: 75 ETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 110
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 183 (69.5 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 43/141 (30%), Positives = 80/141 (56%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFE-PGFRIY 283
S+G+GFV T E AE+A++ + ++GR + V + R + E R E P +Y
Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN--VY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
+ L+G+ I V A+ + R +
Sbjct: 254 KELNGKQIYVGRAQKKVERQT 274
Score = 166 (63.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 42/122 (34%), Positives = 67/122 (54%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG-- 279
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ 285
Query: 280 --------FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TE 333
E
Sbjct: 344 EE 345
Score = 123 (48.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 41/144 (28%), Positives = 68/144 (47%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF- 280
T S + +V ++AE A++ + +D V K P R +R P + + G
Sbjct: 48 TSGSSNYAYVNFQHTKDAEHALDTMN-FD-------VIKGKPVRIMWSQRDPSLRKSGVG 99
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
I+V NL ++N L S G +++ VV D E G S+G+GFV + AI
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKK 157
Query: 341 LDGQNLDGRAIRVNVAEDRQRRSS 364
++G L+GR + V + R+ R +
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAG 184
+++ N D+D E+L LF K G
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFG 215
Score = 43 (20.2 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK 30
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 191 (72.3 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 50/149 (33%), Positives = 80/149 (53%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR-----GTQPER 271
V+ N ET +RG+GFVT S +E+A++A + + GR+L ++ A PR T +
Sbjct: 36 VVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNK 95
Query: 272 APR--VFEPGF-RIYVGNLPWEVDNAR-LEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 327
A + + + R+ + NLPW + + LE FS+ GKV ++ + GR GF FV
Sbjct: 96 AVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVW 154
Query: 328 MSSETELNDAIAALDGQNLDGRAIRVNVA 356
M +A+ +L+G +DGR I V+ A
Sbjct: 155 MKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 127 (49.8 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
++V NL ++ L FS+ G + +A VV + ETG +RG+GFVT S + A L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 342 DGQNLDGRAIRVNVAEDRQR 361
+ L GR +R++ A R+R
Sbjct: 67 KNKKLHGRILRLDFATPRKR 86
Score = 45 (20.9 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFG-NQGF 202
++ LFV NL + + L F G ++ A V + G N+G+
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGY 48
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 196 (74.1 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 63/219 (28%), Positives = 108/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDENLRELFSQFGKTLS 219
Query: 217 VIYNRE-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + ++ G+ + V +A + + R
Sbjct: 220 VKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 182 (69.1 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 40/139 (28%), Positives = 75/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A KA+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L ++FS+ GK ++ +V+ D +G+S+GFGFV+ + N A+ ++G+
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G++I V A+ + R +
Sbjct: 256 MSGKSIFVGRAQKKVERQA 274
Score = 141 (54.7 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPIRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
N AI ++G L+ R + V + R+ R +
Sbjct: 150 AANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG V
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPV 37
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 152 (58.6 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 32/82 (39%), Positives = 52/82 (63%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
R++V L N +L+ F+ G++V+ARV+ DR++GRS+GFGFVT ++ + A A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 341 LDGQNLDGRAIRVNVAEDRQRR 362
++ + LDG I V+ A R+ R
Sbjct: 95 MNAKFLDGWVIFVDPARPREPR 116
Score = 121 (47.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKA-VEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
+VI +R++ RS+GFGFVT +T+E+AEKA EM ++ +DG ++ V+ A PR +P R P
Sbjct: 64 RVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKF-LDGWVIFVDPARPR--EPRR-PL 119
Query: 275 VFEP 278
EP
Sbjct: 120 QQEP 123
Score = 41 (19.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 MADSTSLLSPPSIFARNPYFSIHPR 39
+A S+SLLS PS+ R PR
Sbjct: 11 VAGSSSLLSSPSLCVRRCSTLTSPR 35
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 196 (74.1 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 63/219 (28%), Positives = 108/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L KA +K FG + + +F + L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGAKAKEFTNVYIKN---FGEEVDDENLRELFSQFGKTLS 219
Query: 217 VIYNRE-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V R+ + +S+GFGFV+ E+A KAVE + ++ G+ + V +A + + R
Sbjct: 220 VKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 182 (69.1 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 40/139 (28%), Positives = 75/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A KA+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L ++FS+ GK ++ +V+ D +G+S+GFGFV+ + N A+ ++G+
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G++I V A+ + R +
Sbjct: 256 MSGKSIFVGRAQKKVERQA 274
Score = 141 (54.7 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAP 273
++V + T RS G+ +V +AE+A++ + +D V K P R +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FD-------VIKGKPIRIMWSQRDP 91
Query: 274 RVFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+ + G +++ NL +DN L FS G +++ +VV D E G S+G+ FV ++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQE 149
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
N AI ++G L+ R + V + R+ R +
Sbjct: 150 AANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG V
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPV 37
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 179 (68.1 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 44/144 (30%), Positives = 71/144 (49%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRGFGFVT S++ E + A+ + IDGR++ +A R + P
Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAH 108
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L F E+GKV ++ DR++G+ RGFGF T + D
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPV-D 167
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
I ++G V A RQ
Sbjct: 168 KIVLQKYHTINGHNAEVRKALSRQ 191
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 267 TQP-ERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
T P ER R E ++++G L +E L + + GK+ + V+ D + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT SS E++ A+AA ++DGR + A R+
Sbjct: 67 VTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVARE 100
Score = 48 (22.0 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L ++ E L +E+ G
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWG 45
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 185 (70.2 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 41/135 (30%), Positives = 77/135 (57%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYV 284
+S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+ +P ++V
Sbjct: 378 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS----QPSKTLFV 433
Query: 285 GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 344
L + L++ F G V AR+V DRETG S+GFGFV +SE + A A++
Sbjct: 434 KGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDG 490
Query: 345 NLDGRAIRVNVAEDR 359
+DG + ++ A+ +
Sbjct: 491 EIDGNKVTLDWAKPK 505
Score = 123 (48.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 35/140 (25%), Positives = 66/140 (47%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRI 282
T +R FG+V + E+ EKA+E+ + G + + K R ++ RA R +
Sbjct: 201 TGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGRDSKKVRAART------L 253
Query: 283 YVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 342
NL + + L++VF + V R+V + GRS+G ++ SE + +
Sbjct: 254 LAKNLSFNITEDELKEVFED---AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQ 308
Query: 343 GQNLDGRAIRVNVAEDRQRR 362
G +DGR++ + ++ +R
Sbjct: 309 GAEIDGRSVSLYYTGEKGQR 328
Score = 118 (46.6 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 33/138 (23%), Positives = 67/138 (48%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR--VFEPGFRI 282
RS+G ++ + +AEK +E +IDGR +++ +G + ER + + +
Sbjct: 285 RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKT 344
Query: 283 YV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
V NL + L++VF K +V + G+S+G+ F+ +S + +A+ +
Sbjct: 345 LVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALNSC 400
Query: 342 DGQNLDGRAIRVNVAEDR 359
+ ++GR IR+ + R
Sbjct: 401 NKMEIEGRTIRLELQGPR 418
Score = 49 (22.3 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 345 LVLSNLSYSATEETLQEVFEKATFIKVPQ 373
Score = 38 (18.4 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 162 LFVGNLPYDVDSEKLAM--LFEK 182
LF+GNL V K+A+ LF K
Sbjct: 169 LFIGNLNKSVAELKVAISDLFAK 191
Score = 38 (18.4 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
L NL +++ ++L +FE A VEI
Sbjct: 253 LLAKNLSFNITEDELKEVFEDA--VEI 277
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 180 (68.4 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 42/144 (29%), Positives = 76/144 (52%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT + +K + H +++D + + A PR QP+ R
Sbjct: 52 VMRDPTTKRSRGFGFVTFADPASVDKVLGQPH-HELDSKTIDPKVAFPRRAQPKMVTRTK 110
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG L ++Q F + GKV +A +++D+ T R RGFGFVT +E ++ +
Sbjct: 111 ----KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE-DVVE 165
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
+ + ++ + + A+ ++
Sbjct: 166 KVCEIHFHEINNKMVECKKAQPKE 189
Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 30/96 (31%), Positives = 46/96 (47%)
Query: 265 RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFG 324
+GT +PG ++++G L W+ L FS+ G++ V+ D T RSRGFG
Sbjct: 7 QGTSGSANDSQHDPG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 325 FVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
FVT + + D + LD + I VA R+
Sbjct: 66 FVTFADPASV-DKVLGQPHHELDSKTIDPKVAFPRR 100
Score = 44 (20.5 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+F+G L + + L F K G +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEI 47
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 175 (66.7 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 45/153 (29%), Positives = 79/153 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE----- 270
+VI + ++ RS+G+G+V T E A+ AV +IDGR++ ++ + PR P+
Sbjct: 293 RVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQ 352
Query: 271 RA----PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
RA ++ EP ++VGNL + L F G + + R+ D ++GR +GFG+V
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYV 412
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359
T S + ++G + GR R++ + R
Sbjct: 413 TFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPR 444
Score = 161 (61.7 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
++VG L W VD+ L Q F E+G +V ARV+ D ++GRS+G+G+V + A+AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 342 DGQNLDGRAIRVNVAEDR 359
+ +DGR + ++++ R
Sbjct: 325 GTKEIDGRMVNLDLSNPR 342
Score = 59 (25.8 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FVG L ++VD + L FE+ GT+ A V
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARV 294
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 187 (70.9 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 43/147 (29%), Positives = 84/147 (57%)
Query: 213 SLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA 272
+ ++V N++ +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+
Sbjct: 510 TFIKVPQNQQ-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS 568
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
+P ++V L + L++ F G V AR+V DRETG S+GFGFV +SE
Sbjct: 569 ----QPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEE 621
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ A A++ +DG + ++ A+ +
Sbjct: 622 DAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
Identities = 33/148 (22%), Positives = 73/148 (49%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
L++ + +S+G ++ + +AEK +E +IDGR +++ +G + ER +
Sbjct: 418 LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGK 477
Query: 275 --VFEPGFRIYV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+ + V NL + L++VF K +V +++ G+S+G+ F+ +S
Sbjct: 478 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQ-GKSKGYAFIEFASF 533
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDR 359
+ +A+ + + ++GR IR+ + R
Sbjct: 534 EDAKEALNSCNKMEIEGRTIRLELQGPR 561
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 33/140 (23%), Positives = 66/140 (47%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRI 282
T +R FG+V + E+ EKA+E+ + G + + K R ++ RA R +
Sbjct: 344 TGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGRDSKKVRAART------L 396
Query: 283 YVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 342
NL + + L++VF + + R+V + G+S+G ++ SE + +
Sbjct: 397 LAKNLSFNITEDELKEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQ 451
Query: 343 GQNLDGRAIRVNVAEDRQRR 362
G +DGR++ + ++ +R
Sbjct: 452 GAEIDGRSVSLYYTGEKGQR 471
Score = 49 (22.3 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 488 LVLSNLSYSATEETLQEVFEKATFIKVPQ 516
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 179 (68.1 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 44/143 (30%), Positives = 76/143 (53%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
++ + T RSRGFGF+T + + ++ R+ +DG+L+ +A + Q E+ ++F
Sbjct: 193 IMKDSATGRSRGFGFLTFEDAKSVDALLK--DRHVLDGKLIDPKRAISKEDQ-EKVGKIF 249
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
VG + V + FS+ GK+++ +++ D++TGRSRGFGFVT S + D
Sbjct: 250 -------VGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAV-D 301
Query: 337 AIAALDGQNLDGRAIRVNVAEDR 359
+ L G+A+ V A R
Sbjct: 302 KVCVNKYLTLKGKAMEVKRAAPR 324
Score = 125 (49.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P + ++G L W+ L F ++G +V+ ++ D TGRSRGFGF+T + DA
Sbjct: 160 PSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSV-DA 218
Query: 338 IAALDGQNLDGRAI---RVNVAEDRQR 361
+ D LDG+ I R ED+++
Sbjct: 219 LLK-DRHVLDGKLIDPKRAISKEDQEK 244
Score = 53 (23.7 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K F+G L +D E L F+K G +
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNI 188
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 183 (69.5 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 40/138 (28%), Positives = 78/138 (56%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+ +P
Sbjct: 433 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKT 488
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
++V L + L++ F G + AR+V DRETG S+GFGFV +SE + A A+
Sbjct: 489 LFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 545
Query: 342 DGQNLDGRAIRVNVAEDR 359
+ +DG + ++ A+ +
Sbjct: 546 EDGEIDGNKVTLDWAKPK 563
Score = 52 (23.4 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A VEI
Sbjct: 313 DARTLLAKNLPYKVTQDELKEVFEDA--VEI 341
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 403 LVLSNLSYSATEETLQEVFEKATHIKVPQ 431
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 183 (69.5 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 40/138 (28%), Positives = 78/138 (56%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+ +P
Sbjct: 438 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKT 493
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
++V L + L++ F G + AR+V DRETG S+GFGFV +SE + A A+
Sbjct: 494 LFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 550
Query: 342 DGQNLDGRAIRVNVAEDR 359
+ +DG + ++ A+ +
Sbjct: 551 EDGEIDGNKVTLDWAKPK 568
Score = 52 (23.4 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A VEI
Sbjct: 318 DARTLLAKNLPYKVTQDELKEVFEDA--VEI 346
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 408 LVLSNLSYSATEETLQEVFEKATHIKVPQ 436
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 183 (69.5 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 40/138 (28%), Positives = 78/138 (56%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+ +P
Sbjct: 438 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKT 493
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
++V L + L++ F G + AR+V DRETG S+GFGFV +SE + A A+
Sbjct: 494 LFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 550
Query: 342 DGQNLDGRAIRVNVAEDR 359
+ +DG + ++ A+ +
Sbjct: 551 EDGEIDGNKVTLDWAKPK 568
Score = 52 (23.4 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A VEI
Sbjct: 318 DARTLLAKNLPYKVTQDELKEVFEDA--VEI 346
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 408 LVLSNLSYSATEETLQEVFEKATHIKVPQ 436
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 191 (72.3 bits), Expect = 7.6e-13, P = 7.6e-13
Identities = 45/151 (29%), Positives = 79/151 (52%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 118 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 174
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 175 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAE 229
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G A I V A + +++S
Sbjct: 230 EAIKGLNGQKPSGAAEPITVKFANNPSQKTS 260
Score = 141 (54.7 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 324 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 383
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 384 ASLNGYRLGDRVLQVSFKTNKTHKS 408
Score = 51 (23.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 173 DANLYVSGLPKTMTQKELEQLFSQYGRI 200
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 180 (68.4 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 47/156 (30%), Positives = 74/156 (47%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER P+
Sbjct: 41 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKE 99
Query: 276 FEPGFR--------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 327
G R I+VG +P L + F + G V ++YD E R RGFGF+T
Sbjct: 100 GWKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 159
Query: 328 MSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
E ++ A+ + ++ G+ + V AE R ++
Sbjct: 160 FEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKN 194
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 71 RPHTLDGRNID 81
Score = 111 (44.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 138 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSK-NQ 195
Query: 272 APRVFEPG 279
AP +PG
Sbjct: 196 APG--QPG 201
Score = 53 (23.7 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F+K G V
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVV 138
Score = 48 (22.0 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEV 36
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 189 (71.6 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 74 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 130
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 131 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 185
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 186 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 216
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 267 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 326
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 327 ASLNGYRLGDRVLQVSFKTNKAHKS 351
Score = 51 (23.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 129 DANLYVSGLPKTMTQKELEQLFSQYGRI 156
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 180 (68.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 47/157 (29%), Positives = 76/157 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER P+
Sbjct: 41 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKE 99
Query: 276 -FEPGFR--------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
++ G R I+VG +P L + F + G V ++YD E R RGFGF+
Sbjct: 100 GWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
T E ++ A+ + ++ G+ + V AE R ++
Sbjct: 160 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKN 195
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 71 RPHTLDGRNID 81
Score = 111 (44.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSK-NQ 196
Query: 272 APRVFEPG 279
AP +PG
Sbjct: 197 APG--QPG 202
Score = 53 (23.7 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F+K G V
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVV 139
Score = 48 (22.0 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEV 36
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 180 (68.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 47/157 (29%), Positives = 76/157 (48%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRV 275
++ ++ T++SRGFGFV V + +DGR + PRG QPER P+
Sbjct: 41 IMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKE 99
Query: 276 -FEPGFR--------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
++ G R I+VG +P L + F + G V ++YD E R RGFGF+
Sbjct: 100 GWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363
T E ++ A+ + ++ G+ + V AE R ++
Sbjct: 160 TFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKN 195
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W L FS++G+VV+ ++ D+ T +SRGFGFV + +A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 341 ----LDGQNLD 347
LDG+N+D
Sbjct: 71 RPHTLDGRNID 81
Score = 111 (44.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ + +IY+ E R RGFGF+T + ++AV M H +DI G+ + V +A PR ++ +
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSK-NQ 196
Query: 272 APRVFEPG 279
AP +PG
Sbjct: 197 APG--QPG 202
Score = 53 (23.7 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+FVG +P++ +L F+K G V
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVV 139
Score = 48 (22.0 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
KLFVG L + E L F + G V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEV 36
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 183 (69.5 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 42/144 (29%), Positives = 76/144 (52%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT + +K + H +++D + + A PR QP+ R
Sbjct: 52 VMRDPTTKRSRGFGFVTFADAASVDKVLAQPH-HELDSKTIDPKVAFPRRAQPKMVTRTK 110
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG L ++Q F + GKV +A +++D+ T R RGFGFVT +E ++ +
Sbjct: 111 ----KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE-DVVE 165
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
+ + ++ + + A+ ++
Sbjct: 166 KVCEIHFHEINNKMVECKKAQPKE 189
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+PG ++++G L W+ L FS+ G++ V+ D T RSRGFGFVT + + D
Sbjct: 19 DPG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASV-D 76
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
+ A LD + I VA R+
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRR 100
Score = 44 (20.5 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+F+G L + + L F K G +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEI 47
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 172 (65.6 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
F +YVGN P++ L FS G++ N R+V DRETGR RGF F+ + E A+
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 340 ALDGQNLDGRAIRVNVA 356
++G +GR +RVN+A
Sbjct: 65 QMNGAEFNGRPLRVNLA 81
Score = 91 (37.1 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
++ ++++ +RET R RGF F+ + A++AVE + + +GR L VN A
Sbjct: 31 INNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
Score = 49 (22.3 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTV 186
++VGN P+ E+L F G +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQI 31
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 172 (65.6 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 38/87 (43%), Positives = 54/87 (62%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
E G +++VG L + D LE FS G + VV DRET RSRGFGF+T ++ ++
Sbjct: 4 EEG-KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQRRS 363
A+ A++G++LDGR IRV+ A R S
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGS 89
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA--APRGTQ 268
+S + V+ +RET RSRGFGF+T + E A A+ + +DGR + V+ A + RG++
Sbjct: 32 ISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSARGSR 90
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 172 (65.6 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
PG ++++G L E + LE VF ++G++V ++ DRET +SRGF FVT S + DA
Sbjct: 7 PG-KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 338 IAALDGQNLDGRAIRVNVA 356
++G++LDG+AI+V A
Sbjct: 66 ARDMNGKSLDGKAIKVEQA 84
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 180 (68.4 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 42/144 (29%), Positives = 76/144 (52%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + T RSRGFGFVT + +K + H +++D + + A PR QP+ R
Sbjct: 52 VMRDPTTKRSRGFGFVTFADPASVDKVLGQPH-HELDSKTIDPKVAFPRRAQPKMVTRTK 110
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+I+VG L ++Q F + GKV +A +++D+ T R RGFGFVT +E ++ +
Sbjct: 111 ----KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE-DVVE 165
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
+ + ++ + + A+ ++
Sbjct: 166 KVCEIHFHEINNKMVECKKAQPKE 189
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 266 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
GT +PG ++++G L W+ L FS+ G++ V+ D T RSRGFGF
Sbjct: 8 GTSGSANDSQHDPG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
VT + + D + LD + I VA R+
Sbjct: 67 VTFADPASV-DKVLGQPHHELDSKTIDPKVAFPRR 100
Score = 44 (20.5 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
K+F+G L + + L F K G +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEI 47
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 186 (70.5 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L ++ + LEQVFS++G++ VV DRET RSRGFGFVT + + DA+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 341 LDGQNLDGRAIRVNVA 356
++G+++DGR IRV+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 113 (44.8 bits), Expect = 0.00049, P = 0.00049
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
+S + V+ +RET RSRGFGFVT +++A+ A+ + +DGR + V++A R
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSR 91
Query: 272 APRVFEPGFR 281
R G R
Sbjct: 92 GYRGGSAGGR 101
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 181 (68.8 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 42/138 (30%), Positives = 72/138 (52%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRI 282
T RSRGFGFVT +K + R+++D + + A PR QP+ R +I
Sbjct: 37 TKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KI 91
Query: 283 YVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 342
+VG L ++Q F + GKV +A +++D+ T R RGFGFVT SE ++ + + +
Sbjct: 92 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEIH 150
Query: 343 GQNLDGRAIRVNVAEDRQ 360
++ + + A+ ++
Sbjct: 151 FHEINNKMVECKKAQPKE 168
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L W+ L + F + G+V V+ D T RSRGFGFVT + + D + A
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGV-DKVLA 59
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
LD + I VA R+
Sbjct: 60 QSRHELDSKTIDPKVAFPRR 79
Score = 42 (19.8 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVE 187
K+F+G L + E L F + G V+
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVK 27
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 189 (71.6 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 132
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 133 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 188 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
Score = 141 (54.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHKS 366
Score = 51 (23.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRI 158
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 189 (71.6 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 132
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 133 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 188 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
Score = 141 (54.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHKS 366
Score = 51 (23.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRI 158
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 189 (71.6 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 137
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 138 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 193 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 223
Score = 141 (54.7 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKAHKS 371
Score = 51 (23.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRI 163
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 189 (71.6 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 125
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 126 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 181 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 211
Score = 141 (54.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHKS 373
Score = 51 (23.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRI 151
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 189 (71.6 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 125
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 126 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 181 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 211
Score = 141 (54.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHKS 373
Score = 51 (23.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRI 151
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 183 (69.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 40/138 (28%), Positives = 78/138 (56%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ +S+G+ F+ ++ E+A++A+ ++ +I+GR + + PRG+ R+ +P
Sbjct: 528 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKT 583
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
++V L + L++ F G + AR+V DRETG S+GFGFV +SE + A A+
Sbjct: 584 LFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 640
Query: 342 DGQNLDGRAIRVNVAEDR 359
+ +DG + ++ A+ +
Sbjct: 641 EDGEIDGNKVTLDWAKPK 658
Score = 127 (49.8 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 34/139 (24%), Positives = 71/139 (51%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG-TQPERAPR--VFEPGFR 281
+S+G ++ T +AEK +E +IDGR +++ +G +Q R + + +
Sbjct: 437 KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESK 496
Query: 282 IYV-GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
V NL + L++VF K + +V + + G+S+G+ F+ +S + +A+ +
Sbjct: 497 TLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEALNS 552
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+ + ++GRAIR+ + R
Sbjct: 553 CNKREIEGRAIRLELQGPR 571
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
SR FG+V + E+ EKA+E+ + G + + K + ++ +R R +
Sbjct: 356 SRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKDRDART------LLAK 408
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
NLP++V L++VF + V R+V + G+S+G ++ +E + + G
Sbjct: 409 NLPYKVTQDELKEVFED---AVEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTE 463
Query: 346 LDGRAI 351
+DGR+I
Sbjct: 464 IDGRSI 469
Score = 52 (23.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 159 DAK-LFVGNLPYDVDSEKLAMLFEKAGTVEI 188
DA+ L NLPY V ++L +FE A VEI
Sbjct: 401 DARTLLAKNLPYKVTQDELKEVFEDA--VEI 429
Score = 49 (22.3 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
L + NL Y E L +FEKA +++ +
Sbjct: 498 LVLSNLSYSATEETLQEVFEKATHIKVPQ 526
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 193 (73.0 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 63/219 (28%), Positives = 111/219 (50%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L + T E V FG++ + +F + +L
Sbjct: 165 DRKVFVGQ--FKSRKEREAELGTR--TKEFTNVYIKN-FGDRMDDKTLNGLFGRFGQVLS 219
Query: 217 V-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V + E +S+GFGFV+ E+A+KAV+ + +++G+ + V A + + R
Sbjct: 220 VKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +YV NL +D+ RL++ FS G + + +V+ E GRS+GFGF
Sbjct: 280 FEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVM--TEGGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A++ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQA 376
Score = 163 (62.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 43/139 (30%), Positives = 74/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G GFV T E AE+A+E + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N +D+ L +F G+V++ +V+ D E G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRR 362
+ L+G+ I V A+ + R
Sbjct: 254 KELNGKHIYVGPAQKKVDR 272
Score = 131 (51.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 43/144 (29%), Positives = 69/144 (47%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-RGTQPERAPRVFEPGF- 280
T RS G+ V +AE+A++ + +D V K P R +R P + G
Sbjct: 48 TRRSLGYASVNFEQPADAERALDTMN-FD-------VIKGKPVRIMWSQRDPSLRRSGVG 99
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++ NL +DN L FS G +++ +VV D E G S+G GFV +E AI
Sbjct: 100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGHGFVHFETEEAAERAIEK 157
Query: 341 LDGQNLDGRAIRVNVAEDRQRRSS 364
++G L+ R + V + R+ R +
Sbjct: 158 MNGMLLNDRKVFVGQFKSRKEREA 181
Score = 44 (20.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV L F AG +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPI 37
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 189 (71.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 132
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 133 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 188 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
Score = 141 (54.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHKS 380
Score = 51 (23.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRI 158
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 189 (71.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 132
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 133 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 188 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
Score = 141 (54.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHKS 380
Score = 51 (23.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRI 158
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 193 (73.0 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 63/219 (28%), Positives = 108/219 (49%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQ 216
D K+FVG + E+ A L +A +K FG+ + +F Y L
Sbjct: 165 DRKVFVGR--FKSRKEREAELGARAKEFTNVYIKN---FGDDMNDERLKEMFGKYGPALS 219
Query: 217 V-IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
V + + +S+GFGFV+ E+A+KAV+ + D++G+ + V +A + + R
Sbjct: 220 VKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRK 279
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
FE G +YV NL +D+ RL + F G + +A+V+ E GRS+GFGF
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGF 337
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
V SS E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 170 (64.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 38/141 (26%), Positives = 82/141 (58%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT-QPERAPRVFEPGF-RIY 283
S+G+GFV T E AE+A++ + ++ R + V + R + E R E F +Y
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE--FTNVY 194
Query: 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343
+ N ++++ RL+++F ++G ++ +V+ D + G+S+GFGFV+ + A+ ++G
Sbjct: 195 IKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 344 QNLDGRAIRVNVAEDRQRRSS 364
++++G+++ V A+ + R +
Sbjct: 254 KDMNGKSMFVGRAQKKVERQT 274
Score = 141 (54.7 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 42/151 (27%), Positives = 76/151 (50%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
++V + T RS G+ +V +AE+A++ + I GR + + + +R P
Sbjct: 40 IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWS-------QRDPS 92
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ + G I++ NL +DN L FS G +++ +VV D E G S+G+GFV ++
Sbjct: 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEA 150
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V + R+ R +
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 45 (20.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK 182
A L+VG+L DV AML+EK
Sbjct: 11 ASLYVGDLHQDVTE---AMLYEK 30
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 189 (71.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 92 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 148
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 149 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 203
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 204 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 234
Score = 141 (54.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 298 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 357
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 358 ASLNGYRLGDRVLQVSFKTNKAHKS 382
Score = 51 (23.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 147 DANLYVSGLPKTMTQKELEQLFSQYGRI 174
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 178 (67.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 45/152 (29%), Positives = 81/152 (53%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ + + RSRG GFVT S+V E + A+ + IDGR+L +A PR +R
Sbjct: 40 VLRDFASQRSRGCGFVTFSSVTEVDAAMAA-RPHSIDGRVLEPRRAIPREASGQRGAHWT 98
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG + + + L + F ++GK+ ++ DR++GR RGFGFVT ++
Sbjct: 99 LK--KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDK 156
Query: 337 AIA----ALDGQNLDGRAIRVNVAEDRQRRSS 364
+ A++G + + R +++ E +Q + S
Sbjct: 157 IVLQKYHAINGHHAEVRKA-LSIWEMQQVQGS 187
Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L ++ L + + + G++ + V+ D + RSRG GFVT SS TE++ A+AA
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
++DGR + A R+
Sbjct: 70 RP-HSIDGRVLEPRRAIPRE 88
Score = 44 (20.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAG 184
KLF+G L + E L +++ G
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWG 33
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 189 (71.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 80 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 136
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 137 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 191
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 192 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 222
Score = 141 (54.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 300 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 359
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 360 ASLNGYRLGDRVLQVSFKTNKAHKS 384
Score = 51 (23.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 135 DANLYVSGLPKTMTQKELEQLFSQYGRI 162
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 189 (71.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 137
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 138 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 193 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 223
Score = 141 (54.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHKS 385
Score = 51 (23.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRI 163
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 189 (71.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 137
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 138 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 193 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 223
Score = 141 (54.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHKS 385
Score = 51 (23.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTV 186
DA L+V LP + ++L LF + G +
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRI 163
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 171 (65.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
E G +++VG L + D LE FS G + VV DRET RSRGFGF+T ++ +D
Sbjct: 4 EEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 337 AIAALDGQNLDGRAIRVNVA 356
+ A++G++LDGR IRV+ A
Sbjct: 63 VMRAMNGESLDGRQIRVDHA 82
Score = 106 (42.4 bits), Expect = 0.00022, P = 0.00022
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA--APRGTQ 268
+S + V+ +RET RSRGFGF+T + E A + + +DGR + V+ A + RGT+
Sbjct: 32 ISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSARGTR 90
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 171 (65.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++Y+G L D L+ FS V ARV+ ++ TGRSRG+GFV SE N AI+A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 341 LDGQNLDGRAIRVNVAED 358
++GQ L+G I VNVA+D
Sbjct: 92 MNGQELNGFNISVNVAKD 109
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 187 (70.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 46/144 (31%), Positives = 74/144 (51%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ N +T RSR FGFVT S VEEA+ A+ + +DG + + +A R + P
Sbjct: 59 VVLNPQTKRSRCFGFVTYSAVEEADAAMAA-SPHAVDGNSVELKRAVSR--EDSAKPGAH 115
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
+++VG L +V L Q FS+ G V A ++ D+++G+ RGFGFV + + D
Sbjct: 116 AKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNH-DAAD 174
Query: 337 AIAALDGQNLDGRAIRVNVAEDRQ 360
A + + G + V A ++
Sbjct: 175 KAAVVKFHPIQGHRVEVKKAVPKE 198
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 183 (69.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 50/155 (32%), Positives = 81/155 (52%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ ++++ + E +SRG V E +KA E+ +++ + GR L V K P G R
Sbjct: 97 VTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-KEDPDGEHARR 154
Query: 272 A-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
A + G ++V NL ++V +L++VFS G VV A ++ D++ G+SRG G VT
Sbjct: 155 AMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQ 213
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E AI+ +GQ L R + V + E + F
Sbjct: 214 SIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDF 248
Score = 104 (41.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 35/115 (30%), Positives = 52/115 (45%)
Query: 241 EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVF 300
++A+EM R + G A G AP V +I+V NLP++ L+ F
Sbjct: 580 DRAIEM-ERGNFGGSF-----AGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKF 633
Query: 301 SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355
+E G V+ A + E G+S+G G V S A ++G L GR I V +
Sbjct: 634 NECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 686
Score = 57 (25.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV NL Y V +KL +F AG V A++
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADI 195
Score = 51 (23.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEV 191
+ F+ N+P+DV + L L EK G V E+
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVEL 102
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 183 (69.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 50/155 (32%), Positives = 81/155 (52%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ ++++ + E +SRG V E +KA E+ +++ + GR L V K P G R
Sbjct: 97 VTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-KEDPDGEHARR 154
Query: 272 A-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
A + G ++V NL ++V +L++VFS G VV A ++ D++ G+SRG G VT
Sbjct: 155 AMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQ 213
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E AI+ +GQ L R + V + E + F
Sbjct: 214 SIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDF 248
Score = 103 (41.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
AP V +I+V NLP++ L+ F+E G V+ A + E G+S+G G V S
Sbjct: 605 APGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESP 662
Query: 332 TELNDAIAALDGQNLDGRAIRVNV 355
A ++G L GR I V +
Sbjct: 663 EVAERACRMMNGMKLSGREIDVRI 686
Score = 57 (25.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV NL Y V +KL +F AG V A++
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADI 195
Score = 51 (23.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEV 191
+ F+ N+P+DV + L L EK G V E+
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVEL 102
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 183 (69.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 50/155 (32%), Positives = 81/155 (52%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ ++++ + E +SRG V E +KA E+ +++ + GR L V K P G R
Sbjct: 97 VTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-KEDPDGEHARR 154
Query: 272 A-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
A + G ++V NL ++V +L++VFS G VV A ++ D++ G+SRG G VT
Sbjct: 155 AMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQ 213
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E AI+ +GQ L R + V + E + F
Sbjct: 214 SIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDF 248
Score = 103 (41.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
AP V +I+V NLP++ L+ F+E G V+ A + E G+S+G G V S
Sbjct: 605 APGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESP 662
Query: 332 TELNDAIAALDGQNLDGRAIRVNV 355
A ++G L GR I V +
Sbjct: 663 EVAERACRMMNGMKLSGREIDVRI 686
Score = 57 (25.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV NL Y V +KL +F AG V A++
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADI 195
Score = 51 (23.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEV 191
+ F+ N+P+DV + L L EK G V E+
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVEL 102
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 180 (68.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 45/161 (27%), Positives = 80/161 (49%)
Query: 200 QGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
+G + C V V+ + T RSRGFGFVT +K + R+++D + +
Sbjct: 34 EGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQT-RHELDSKTIDP 92
Query: 260 NKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR 319
A PR QP+ R +I+VG L ++Q F + GKV +A +++D+ T R
Sbjct: 93 KVAFPRRAQPKLVTRTK----KIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNR 148
Query: 320 SRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
RGFGFVT +E ++ + + + ++ + + A+ ++
Sbjct: 149 HRGFGFVTFENE-DVVEKVCEIHFHEINNKMVECKKAQPKE 188
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L W+ L+ F + G+V + V+ D T RSRGFGFVT + + D + A
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGV-DKVLA 79
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
LD + I VA R+
Sbjct: 80 QTRHELDSKTIDPKVAFPRR 99
Score = 43 (20.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVE 187
K+F+G L + E L F K G V+
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVK 47
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 183 (69.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 50/155 (32%), Positives = 81/155 (52%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ ++++ + E +SRG V E +KA E+ +++ + GR L V K P G R
Sbjct: 111 VTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-KEDPDGEHARR 168
Query: 272 A-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
A + G ++V NL ++V +L++VFS G VV A ++ D++ G+SRG G VT
Sbjct: 169 AMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQ 227
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E AI+ +GQ L R + V + E + F
Sbjct: 228 SIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDF 262
Score = 104 (41.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 35/115 (30%), Positives = 52/115 (45%)
Query: 241 EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVF 300
++A+EM R + G A G AP V +I+V NLP++ L+ F
Sbjct: 594 DRAIEM-ERGNFGGSF-----AGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKF 647
Query: 301 SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355
+E G V+ A + E G+S+G G V S A ++G L GR I V +
Sbjct: 648 NECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 700
Score = 57 (25.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
+FV NL Y V +KL +F AG V A++
Sbjct: 180 VFVANLDYKVGWKKLKEVFSMAGVVVRADI 209
Score = 51 (23.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 161 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEV 191
+ F+ N+P+DV + L L EK G V E+
Sbjct: 85 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVEL 116
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 151 (58.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 37/138 (26%), Positives = 67/138 (48%)
Query: 227 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGN 286
+ FGFVT S VEE + A+ + +DGR++ +A R + + +I+VG
Sbjct: 42 QSFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVKPGAHLT---VKIFVGG 97
Query: 287 LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346
+ + + L F ++GK+ V+ DR++G+ RGF FVT ++ + ++ +
Sbjct: 98 IKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VNYHTI 155
Query: 347 DGRAIRVNVAEDRQRRSS 364
+G V A +Q S
Sbjct: 156 NGHNCEVRKALSKQEMQS 173
Score = 38 (18.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTV 186
+LF+G L ++ + L FE GT+
Sbjct: 8 RLFIGGLSFETIEDSLREGFEM-GTL 32
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 181 (68.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 42/138 (30%), Positives = 72/138 (52%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRI 282
T RSRGFGFVT +K + R+++D + + A PR QP+ R +I
Sbjct: 57 TKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KI 111
Query: 283 YVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 342
+VG L ++Q F + GKV +A +++D+ T R RGFGFVT SE ++ + + +
Sbjct: 112 FVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCEIH 170
Query: 343 GQNLDGRAIRVNVAEDRQ 360
++ + + A+ ++
Sbjct: 171 FHEINNKMVECKKAQPKE 188
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L W+ L + F + G+V V+ D T RSRGFGFVT + + D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGV-DKVLA 79
Query: 341 LDGQNLDGRAIRVNVAEDRQ 360
LD + I VA R+
Sbjct: 80 QSRHELDSKTIDPKVAFPRR 99
Score = 42 (19.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVE 187
K+F+G L + E L F + G V+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVK 47
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 188 (71.2 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 60/210 (28%), Positives = 102/210 (48%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVF--YVSLLQV- 217
K+FVG D E A L KA +K FG + VF Y L V
Sbjct: 166 KVFVGRFKNRKDRE--AELRSKASEFTNVYIKN---FGGDMDDERLKDVFSKYGKTLSVK 220
Query: 218 IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE 277
+ + +S+GFGFV+ + E A+KAVE + DI+G+L+ V +A + + ++FE
Sbjct: 221 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 280
Query: 278 P----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVT 327
G ++Y+ NL +D+ +L FS G + +V+ +E G+S+GFG +
Sbjct: 281 QLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGFGLIC 338
Query: 328 MSSETELNDAIAALDGQNLDGRAIRVNVAE 357
SS + A+ ++G+ L + + + +A+
Sbjct: 339 FSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 166 (63.5 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 37/139 (26%), Positives = 74/139 (53%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV A++A+E + + G + V + R + +Y+
Sbjct: 136 SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIK 195
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N ++D+ RL+ VFS++GK ++ +V+ D +G+S+GFGFV+ S A+ ++G++
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 254
Query: 346 LDGRAIRVNVAEDRQRRSS 364
++G+ I V A+ + R +
Sbjct: 255 INGQLIFVGRAQKKVERQA 273
Score = 127 (49.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 37/151 (24%), Positives = 81/151 (53%)
Query: 215 LQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR 274
+++ ++ T RS G+ +V + +A+KA++ + +DI + + R +R
Sbjct: 39 IRICRDQVTRRSLGYAYVNFLQLADAQKALDTMN-FDI------IKGKSIRLMWSQRDAY 91
Query: 275 VFEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
+ G +++ NL +DN L + FS GK+++++V+ D + G S+G+ FV +++
Sbjct: 92 LRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSA 149
Query: 334 LNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+ AI ++G+ L G + V ++R+ R +
Sbjct: 150 ADRAIEEMNGKLLKGCKVFVGRFKNRKDREA 180
Score = 44 (20.5 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTV 186
A L+VG+L DV + +LF K TV
Sbjct: 10 ASLYVGDLHADVTED---LLFRKFSTV 33
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 192 (72.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 60/219 (27%), Positives = 105/219 (47%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFE--KAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQ 216
D ++FVG D E FE KA I + + F + +
Sbjct: 207 DREVFVGKHISKKDRESK---FEEMKANFTNIYVKNIDLNYSEESFEKLFSP--FGKITS 261
Query: 217 VIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+ ++ D +S+GFGFV E A KAVE + +I+G+ + V +A + + E +
Sbjct: 262 IYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQ 321
Query: 276 FEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
+E G ++V NL +D+ +LE+ F G + +A+V+ D E G+S+GFGF
Sbjct: 322 YEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGF 380
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ-RRS 363
V ++ E AI ++ + ++G+ + V +A+ + RRS
Sbjct: 381 VCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRS 419
Score = 153 (58.9 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 46/181 (25%), Positives = 82/181 (45%)
Query: 182 KAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAE 241
++G I H N+ H A + +V + E +S+ FGFV T E AE
Sbjct: 136 RSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAE 194
Query: 242 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 301
A+E + ++ R + V K + + + + IYV N+ E++FS
Sbjct: 195 AAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFS 254
Query: 302 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361
GK+ + + D++ G+S+GFGFV A+ L+ + ++G+ I V A+ ++
Sbjct: 255 PFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRE 313
Query: 362 R 362
R
Sbjct: 314 R 314
Score = 146 (56.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 45/155 (29%), Positives = 75/155 (48%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
VS ++V + + +S G+ +V E+ EKA+E + I+GR + +Q +
Sbjct: 78 VSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRI-----MWSQRDP 132
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+ R G I++ NL +DN L FS GK+++ +V D E G+S+ FGFV +
Sbjct: 133 SARRSGDG-NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETA 190
Query: 332 TELNDAIAALDGQNLDGRAIRVNV-AEDRQRRSSF 365
AI ++G L+ R + V + R S F
Sbjct: 191 EAAEAAIENVNGMLLNDREVFVGKHISKKDRESKF 225
Score = 39 (18.8 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEV 191
A L+VG L V+ L +F G V V
Sbjct: 52 ASLYVGELNPSVNEATLFEIFSPIGQVSSIRV 83
WARNING: HSPs involving 1098 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 365 299 0.00095 115 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1348
No. of states in DFA: 598 (64 KB)
Total size of DFA: 198 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.82u 0.08s 21.90t Elapsed: 00:00:02
Total cpu time: 21.85u 0.08s 21.93t Elapsed: 00:00:02
Start: Fri May 10 00:46:02 2013 End: Fri May 10 00:46:04 2013
WARNINGS ISSUED: 2