BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017842
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 338 bits (866), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 204/368 (55%), Positives = 244/368 (66%), Gaps = 45/368 (12%)
Query: 2 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIKLHLSDSSLSSKGFSF 59
SS S LKPL+ MADS+S + S PSI + I + + LS S
Sbjct: 3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSL 61
Query: 60 KLKKTTHF--SSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQGADETE 117
LK TH S F +FVAQTSDWA E+ ++ +E E E + E+Q D +E
Sbjct: 62 SLKTKTHLKKSPFVSFVAQTSDWA---EEGGEGSVAVE-------ETENSLESQ--DVSE 109
Query: 118 GNLSDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLA 177
G+ S+ EG+ V E E + + E V E EF EP E+AKLFVGNL YDV+S+ LA
Sbjct: 110 GDESEGDASEGD--VSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALA 167
Query: 178 MLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237
MLFE+AGTVEIAEV IYNRETD+SRGFGFVTMS+V
Sbjct: 168 MLFEQAGTVEIAEV--------------------------IYNRETDQSRGFGFVTMSSV 201
Query: 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLE 297
+EAE AVE F+RYD++GRLLTVNKAAPRG++PERAPRV+EP FR+YVGNLPW+VDN RLE
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLE 261
Query: 298 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357
Q+FSEHGKVV ARVVYDRETGRSRGFGFVTMS ELN+AI+ALDGQNL+GRAIRVNVAE
Sbjct: 262 QLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
Query: 358 DRQRRSSF 365
+R R +
Sbjct: 322 ERPPRRGY 329
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 307 bits (786), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 224/355 (63%), Gaps = 83/355 (23%)
Query: 15 MADSTSLLSPPSIFARNPYFSIHP----RPRPIKLHLSDSSLSSKGFSFKLKKTTHFSSF 70
MA + L+S P F S +P + +PI L S +L S K+TT F +F
Sbjct: 1 MATNGCLISLPPFFTTTKSISSYPFLSTQLKPISLSSSLPTLLSLN-----KRTTQFPTF 55
Query: 71 TTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQGADETEGNLSDWGEPEGED 130
+ +++ DNT + +QEQ G + P++
Sbjct: 56 VSVLSE----------DDNTLVLDDQEQ---GGDFPSF---------------------- 80
Query: 131 TVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190
V EAGE EE+ EP EDAKLFVGNLPYD+DSE LA LF++AG VEIAE
Sbjct: 81 -VGEAGE------------TEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAE 127
Query: 191 VKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRY 250
V IYNRETDRSRGFGFVTMSTVEEA+KAVE++ +Y
Sbjct: 128 V--------------------------IYNRETDRSRGFGFVTMSTVEEADKAVELYSQY 161
Query: 251 DIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNAR 310
D++GRLLTVNKAAPRG++PERAPR F+P +RIYVGN+PW++D+ARLEQVFSEHGKVV+AR
Sbjct: 162 DLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSAR 221
Query: 311 VVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
VV+DRE+GRSRGFGFVTMSSE E+++AIA LDGQ LDGR IRVN AE+R RR+++
Sbjct: 222 VVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/257 (64%), Positives = 189/257 (73%), Gaps = 33/257 (12%)
Query: 108 WENQGADETEGNLSDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNL 167
WE +G+ T L +PEG V G + S E GV + F EPPE+AKLFVGNL
Sbjct: 8 WEQEGS--TNAVLEGESDPEG---AVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNL 62
Query: 168 PYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSR 227
PYDVDSEKLA +F+ AG VEIAEV IYNRETDRSR
Sbjct: 63 PYDVDSEKLAGIFDAAGVVEIAEV--------------------------IYNRETDRSR 96
Query: 228 GFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV-FEPGFRIYVGN 286
GFGFVTMSTVEEAEKAVE+ + YD+DGR LTVNKAAPRG+ PERAPR FEP R+YVGN
Sbjct: 97 GFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCRVYVGN 155
Query: 287 LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346
LPW+VD +RLEQ+FSEHGKVV+ARVV DRETGRSRGFGFVTMSSE+E+NDAIAALDGQ L
Sbjct: 156 LPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTL 215
Query: 347 DGRAIRVNVAEDRQRRS 363
DGRA+RVNVAE+R RR+
Sbjct: 216 DGRAVRVNVAEERPRRA 232
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 301 bits (772), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 198/373 (53%), Positives = 240/373 (64%), Gaps = 66/373 (17%)
Query: 1 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIKLHLSDSSL 52
MS +T ++KP SSMA ++ L+S P +FA PY S +P + LHLS
Sbjct: 1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKL-LHLS---- 54
Query: 53 SSKGFSFKLKKTTHFSSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEEPNWENQG 112
T+ + +TS A QEE+ T+ L+ + +E+G+ N+E G
Sbjct: 55 -----------CTYSPCILSPKKKTSVSALQEEEN---TLILDGQGQESGDLF-NFEPSG 99
Query: 113 ADETEGNLSDWGEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVD 172
+ E E V G+ E E EEEEF EPPEDAKLFVGNLPYDVD
Sbjct: 100 EETEE-----------EGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVD 148
Query: 173 SEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232
SE LA LFE+AG VEIAEV IYNR+TD+SRGFGFV
Sbjct: 149 SEGLARLFEQAGVVEIAEV--------------------------IYNRDTDQSRGFGFV 182
Query: 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVD 292
TMSTVEEAEKAVEM++RYD++GRLLTVNKAA RG +PER PR FE +RIYVGN+PW +D
Sbjct: 183 TMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGID 242
Query: 293 NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352
+ARLEQ+FSEHGKVV+ARVVYDRETGRSRGFGFVTM+SE E++DAIA LDGQ+LDGR IR
Sbjct: 243 DARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIR 302
Query: 353 VNVAEDRQRRSSF 365
VNVAEDR RR++F
Sbjct: 303 VNVAEDRSRRNTF 315
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 141/243 (58%), Gaps = 55/243 (22%)
Query: 149 EEEEFVEPP---EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMW 205
++ E E P ED KLFVGNLP+ VDS LA LFE+AG VEI EV
Sbjct: 74 DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEV-------------- 119
Query: 206 VCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA-AP 264
IY++ + RSRGFGFVTMST EE E A + F+ Y+IDGR + VN AP
Sbjct: 120 ------------IYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAP 167
Query: 265 -----------RGTQPE--------------RAPRVFEPGFRIYVGNLPWEVDNARLEQV 299
RG R R + R+YVGNL W VD+ L+++
Sbjct: 168 AKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKEL 227
Query: 300 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359
FSE G VV+A+VVYDR++GRSRGFGFVT SS E+NDAI +L+G +LDGR+IRV+ AE+R
Sbjct: 228 FSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
Query: 360 QRR 362
RR
Sbjct: 288 PRR 290
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
PR F +++VGNLP+ VD+A L +F G V V+YD+ +GRSRGFGFVTMS++
Sbjct: 82 PR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKE 140
Query: 333 ELNDAIAALDGQNLDGRAIRVNV--AEDRQRRSSF 365
E+ A +G +DGRAIRVN A ++ SSF
Sbjct: 141 EVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 175
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 145/250 (58%), Gaps = 55/250 (22%)
Query: 142 SGEEGVFEEEEFVEPP---EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFG 198
SG + + ++ E E P ED KLFVGNLP+ VDS LA LFE+AG VE+ EV
Sbjct: 66 SGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEV------- 118
Query: 199 NQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 258
IY++ T RSRGFGFVTMST EE E A + F+ Y+IDGR +
Sbjct: 119 -------------------IYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIR 159
Query: 259 VNKA-AP-----------RGTQPE--------------RAPRVFEPGFRIYVGNLPWEVD 292
VN AP RG R R + R+YVGNL W VD
Sbjct: 160 VNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVD 219
Query: 293 NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352
+ L+++FSE G VV+A+VVYDR++GRSRGFGFVT SS E+NDAI +L+G +LDGR+IR
Sbjct: 220 DLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIR 279
Query: 353 VNVAEDRQRR 362
V+ AE+R RR
Sbjct: 280 VSAAEERPRR 289
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 273 PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
PR F +++VGNLP+ VD+A L +F G V V+YD+ TGRSRGFGFVTMS++
Sbjct: 81 PR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKE 139
Query: 333 ELNDAIAALDGQNLDGRAIRVNV--AEDRQRRSSF 365
E+ A +G +DGRAIRVN A ++ SSF
Sbjct: 140 EVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 174
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 187 bits (476), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 139/236 (58%), Gaps = 44/236 (18%)
Query: 141 ESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQ 200
E G++GV EE F D K+FVGNLP+ DS LA LFE+AG VE+ EV
Sbjct: 71 EDGDDGVEEERNF---SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEV--------- 118
Query: 201 GFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 260
IY++ T RSRGFGFVTMS+ EE E A + F+ Y++DGR L VN
Sbjct: 119 -----------------IYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161
Query: 261 KAAPRGTQPERAPRVFEPGF-----------RIYVGNLPWEVDNARLEQVFSEHGKVVNA 309
P PE+ G R+YVGNL W VD LE +FSE GKVV+A
Sbjct: 162 SGPP----PEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDA 217
Query: 310 RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
+VVYDR++GRSRGFGFVT SS E+N+AI +LDG +L+GRAIRV+ AE R R F
Sbjct: 218 KVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 182 bits (461), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 138/244 (56%), Gaps = 53/244 (21%)
Query: 149 EEEEF--VEPPE------DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQ 200
EE+ F V PP+ D KLFVGNLP++VDS +LA LFE AG VE+ EV
Sbjct: 72 EEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV--------- 122
Query: 201 GFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN 260
IY++ T RSRGFGFVTMS+V E E A + F+ Y++DGR L VN
Sbjct: 123 -----------------IYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
Query: 261 KAAPRGTQPE---RAPRVFEPGF----------------RIYVGNLPWEVDNARLEQVFS 301
P + + R PR R+YVGNL W VD+ LE +FS
Sbjct: 166 AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFS 225
Query: 302 EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361
E GKVV ARV+YDR++GRS+GFGFVT S E+ +AI +LDG +LDGR IRV+ AE R
Sbjct: 226 EQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285
Query: 362 RSSF 365
R +
Sbjct: 286 RRQY 289
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 130/220 (59%), Gaps = 39/220 (17%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVI 218
D K+FVGNL + DS LA LFE+AG VE+ EV I
Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEV--------------------------I 119
Query: 219 YNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR---- 274
Y++ T RSRGFGFVTMS+ EE E A + F+ Y++DGR L VN P + + R
Sbjct: 120 YDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSS 179
Query: 275 ---------VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGF 325
F+ R+YVGNL W VD LE +FSE GKVV+A+VVYDR++GRSRGFGF
Sbjct: 180 FRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGF 239
Query: 326 VTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
VT SS E+N+AI +LDG +L+GRAIRV+ AE R R F
Sbjct: 240 VTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 117/214 (54%), Gaps = 35/214 (16%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIY 219
+L+VGNLP+ + S +L+ +F +AGTV E+ +Y
Sbjct: 114 GRLYVGNLPFSMTSSQLSEIFAEAGTVANVEI--------------------------VY 147
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN-KAAPRGTQPERAP---RV 275
+R TDRSRGF FVTM +VEEA++A+ +F + GR + VN PRG + E R
Sbjct: 148 DRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRS 207
Query: 276 FEPGF-----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
GF ++YV NL W + + L F++ ++A+V+YDR +GRSRGFGF+T SS
Sbjct: 208 TYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSS 267
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
+N A+ ++ L+GR +R+NVA + SS
Sbjct: 268 AEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSS 301
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G R+YVGNLP+ + +++L ++F+E G V N +VYDR T RSRGF FVTM S E +AI
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 339 AALDGQNLDGRAIRVNVAE 357
DG + GR ++VN E
Sbjct: 173 RLFDGSQVGGRTVKVNFPE 191
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 110/203 (54%), Gaps = 34/203 (16%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
+L+VGN+P ++++++L + E+ G +EIAEV +Y+
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEV--------------------------MYD 118
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP-------RGTQPERAP 273
+ + RSR FGFVTM TVE+A +E + +I GR + VN TQ E +
Sbjct: 119 KYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQ 178
Query: 274 RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETE 333
V P +++Y+GNL V N L+ FSE GKV+ A+V T +S GFGFV+ SSE E
Sbjct: 179 FVESP-YKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEE 237
Query: 334 LNDAIAALDGQNLDGRAIRVNVA 356
+ AI AL+ L+G+ IRVN A
Sbjct: 238 VEAAIQALNNSVLEGQKIRVNKA 260
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
R+YVGN+P ++N L + EHG + A V+YD+ +GRSR FGFVTM + + N I
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 341 LDGQNLDGRAIRVNVAE 357
L+ + GR I+VN+ E
Sbjct: 145 LNDTEIGGRKIKVNITE 161
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
R+YVGNL W VD+ LE +F+E GKVV ARV+YDR++GRS+GFGFVT+SS E+ AI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 341 LDGQNLDGRAIRVNVAEDRQRRSSF 365
L+G +LDGR IRV+ AE R R F
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRGQF 342
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%)
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
F P +++VGNL + VD+A+L Q+F G V V+YD+ TGRSRGFGFVTMS+ E+
Sbjct: 95 FSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRR 362
A +G +GR +RVN +R
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPPPPKR 181
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 63/119 (52%), Gaps = 29/119 (24%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVI 218
D KLFVGNL ++VDS +LA LFE AG VE+ EV I
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV--------------------------I 131
Query: 219 YNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---RAPR 274
Y++ T RSRGFGFVTMST E E A + F+ Y+ +GR L VN P + E R PR
Sbjct: 132 YDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 29/109 (26%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
+L+VGNL + VD L LF + G V A +VIY+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEA--------------------------RVIYD 291
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA---APRG 266
R++ RS+GFGFVT+S+ +E +KA+ + D+DGR + V++A PRG
Sbjct: 292 RDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRG 340
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+++VG L W D++ L+Q F+ G+V A V+ DRETGRSRGFGFV+ S E N+AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 341 LDGQNLDGRAIRVNVAEDRQR--RSSF 365
+DG+ L+GR IRVN+A +R RSSF
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSF 122
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 26/110 (23%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIY 219
+KLFVG L + D L F G V A VI
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEA--------------------------TVIA 68
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269
+RET RSRGFGFV+ S + A A++ +++GR + VN A R + P
Sbjct: 69 DRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W D+ LE FS++G+V++++++ DRETGRSRGFGFVT E + DAI
Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67
Query: 340 ALDGQNLDGRAIRVNVAE 357
++GQ+LDGR+I VN A+
Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 26/107 (24%)
Query: 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLL 215
P + + FVG L + D L F + G E+ + K
Sbjct: 4 PDVEYRCFVGGLAWATDDRALETAFSQYG--EVLDSK----------------------- 38
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
+I +RET RSRGFGFVT + + A+E + D+DGR +TVN+A
Sbjct: 39 -IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEA 84
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W D+ LE F+++G V++++++ DRETGRSRGFGFVT E + DAI
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 340 ALDGQNLDGRAIRVNVAE 357
++GQ+LDGR+I VN A+
Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 26/102 (25%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
+ FVG L + D L F + G V + ++I +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDS--------------------------KIIND 42
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
RET RSRGFGFVT + + A+E + D+DGR +TVN+A
Sbjct: 43 RETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 60/81 (74%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W D+ L+ FS++G V++++++ DRETGRSRGFGFVT +S+ + AI
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 340 ALDGQNLDGRAIRVNVAEDRQ 360
A++GQ+LDGR I VN A+ R+
Sbjct: 66 AMNGQDLDGRNITVNEAQSRR 86
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 26/105 (24%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
+ FVG L + D + L F K G V + ++I +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDS--------------------------KIITD 40
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
RET RSRGFGFVT ++ E +A+E + D+DGR +TVN+A R
Sbjct: 41 RETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W +N LEQ F+ G+V++++V+ DRETGRSRGFGFVT SSE + DAI
Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67
Query: 340 ALDGQNLDGRAIRVNVAE 357
++G+ LDGR I VN A+
Sbjct: 68 NMNGKELDGRNITVNQAQ 85
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 26/102 (25%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
+ FVG L + ++E L F G V + +VI +
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDS--------------------------KVITD 42
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
RET RSRGFGFVT S+ + A+E + ++DGR +TVN+A
Sbjct: 43 RETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQA 84
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W D LE FS+ G++V+++++ DRETGRSRGFGFVT E + DAI
Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67
Query: 340 ALDGQNLDGRAIRVNVAE 357
++GQ+LDGR+I VN A+
Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 26/107 (24%)
Query: 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLL 215
P + + FVG L + D L F + G E+ + K
Sbjct: 4 PDVEYRCFVGGLAWATDERSLETAFSQFG--ELVDSK----------------------- 38
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
+I +RET RSRGFGFVT + + A+E + D+DGR +TVN+A
Sbjct: 39 -IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEA 84
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W N LE F+ +G++++++V+ DRETGRSRGFGFVT SSE + DAI
Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
Query: 340 ALDGQNLDGRAIRVNVAE 357
++G+ LDGR I VN A+
Sbjct: 68 NMNGKELDGRNITVNQAQ 85
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 26/102 (25%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
+ FVG L + +E L F G EI + K VI +
Sbjct: 9 RCFVGGLAWATSNESLENAFASYG--EILDSK------------------------VITD 42
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
RET RSRGFGFVT S+ A+E + ++DGR +TVN+A
Sbjct: 43 RETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQA 84
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 56/78 (71%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W +A LE+ FS+ G+V++++++ DRETGRSRGFGFVT E + DAI
Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65
Query: 340 ALDGQNLDGRAIRVNVAE 357
++G+ LDGR I VN A+
Sbjct: 66 EMNGKELDGRTITVNEAQ 83
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
++I +RET RSRGFGFVT + + A++ + ++DGR +TVN+A
Sbjct: 36 KIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEA 82
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 58/79 (73%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G + + +D L + F+++G+VV+ RV+ DRETGRSRGFGFVT +S + AI A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 341 LDGQNLDGRAIRVNVAEDR 359
LDG++L GR ++VN A DR
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 26/112 (23%)
Query: 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVS 213
+ +KLF+G + Y +D + L F K G E+ + +
Sbjct: 34 IRCMSSSKLFIGGMAYSMDEDSLREAFTKYG--EVVDTR--------------------- 70
Query: 214 LLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265
VI +RET RSRGFGFVT ++ E A A++ D+ GR++ VN A R
Sbjct: 71 ---VILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%)
Query: 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339
+R +VG L W ++ LEQ FS+ G + +++++ DRETGRSRGFGFVT E + DAI
Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65
Query: 340 ALDGQNLDGRAIRVNVAE 357
++GQ LDGR I VN A+
Sbjct: 66 GMNGQELDGRNITVNEAQ 83
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 26/102 (25%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
+ FVG L + + E L F + G + + ++I +
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDS--------------------------KIIND 40
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
RET RSRGFGFVT + A+E + ++DGR +TVN+A
Sbjct: 41 RETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEA 82
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 43/222 (19%)
Query: 158 EDAKLF----VGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVS 213
E AKLF V N D D EKL FE G + +V
Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV---------------------- 214
Query: 214 LLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI-DGRLLTVNKAAPRGTQPERA 272
++E +S+GFGFV T E AE AV+ + D+ +G+ L V +A + + +
Sbjct: 215 -----MSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 273 PRVFEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRG 322
R FE G +YV NL +D+ RL FS +G + +A+V+ D E GRS+G
Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKG 328
Query: 323 FGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
FGFV ++ +E A+ L+G+ + + + V +A+ ++ R +
Sbjct: 329 FGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKA 370
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 2/142 (1%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
E S+G+GFV T E A +++ + ++G+ + V K PR + + +
Sbjct: 125 EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTN 184
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YV N + D+ +L++ F +GK+ + +V+ +E G+S+GFGFV + A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 342 DGQNL-DGRAIRVNVAEDRQRR 362
+G+++ +G+++ V A+ + R
Sbjct: 244 NGKDMGEGKSLYVARAQKKAER 265
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 35/204 (17%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIY 219
A L+VG+LP DV+ L F AG V + VC VI
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPV---------------LSIRVCR-------DVI- 38
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 279
T RS G+ +V +AE+A++ + +D+ V R +R P + G
Sbjct: 39 ---TRRSLGYAYVNFQQPADAERALDTMN-FDL------VRNKPIRIMWSQRDPSLRRSG 88
Query: 280 F-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
+++ NL +DN + FS G +++ +V D E G S+G+GFV +E N +I
Sbjct: 89 VGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSI 147
Query: 339 AALDGQNLDGRAIRVNVAEDRQRR 362
++G L+G+ + V R+ R
Sbjct: 148 DKVNGMLLNGKKVYVGKFIPRKER 171
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 54/79 (68%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
++++G L W D+A L F+ G VV+A+V+ DRETGRSRGFGFV + E AI+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 341 LDGQNLDGRAIRVNVAEDR 359
+DG+ L+GR IRVN A DR
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 26/110 (23%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
KLF+G L + D L F G V A +VI +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDA--------------------------KVIVD 69
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE 270
RET RSRGFGFV + A A+ +++GR + VN A R + P
Sbjct: 70 RETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPR 119
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 12/154 (7%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE---- 277
+T RSRGFGFV EEA+KAV + +++GR++ V +A R + R FE
Sbjct: 226 DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQ 285
Query: 278 ------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS +G + +A+V+ E G S+GFGFV SS
Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGFRIYV 284
SRG+GFV T E A +A++ + ++ R + V + R + E +V E +Y+
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME-FTNVYI 195
Query: 285 GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 344
N ++D+ RL ++FS G ++ +V+ D +TGRSRGFGFV + E A++ ++G+
Sbjct: 196 KNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGK 254
Query: 345 NLDGRAIRVNVAEDRQRR 362
++GR I V A+ R R
Sbjct: 255 EVNGRMIYVGRAQKRIER 272
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 36/204 (17%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIY 219
A L+VG+L DV AML+EK F G M + +V
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK--------------FSPAGPIMSI---------RVCR 44
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 279
+ T RS G+ ++ +AE+A++ + I GR + + + +R P + + G
Sbjct: 45 DIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSG 97
Query: 280 F-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
+++ NL +DN L FS G +++ +VV D E G SRG+GFV ++ N AI
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETQEAANRAI 155
Query: 339 AALDGQNLDGRAIRVNVAEDRQRR 362
++G L+ R + V + R+ R
Sbjct: 156 QTMNGMLLNDRKVFVGHFKSRRER 179
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 36/130 (27%)
Query: 132 VVEAGERQEESGE-EGVFEE--EEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI 188
V A +R E GE + FE+ +E + + L+V NL +D ++L F GT+
Sbjct: 263 VGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITS 322
Query: 189 AEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH 248
A+V +G H S+GFGFV S+ EEA KAV
Sbjct: 323 AKVM------TEGGH----------------------SKGFGFVCFSSPEEATKAVT--- 351
Query: 249 RYDIDGRLLT 258
+++GR+++
Sbjct: 352 --EMNGRIVS 359
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 56/81 (69%)
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
E +R +VG L W ++ L++ FS+ G V++++++ DRE+GRSRGFGFVT E + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 337 AIAALDGQNLDGRAIRVNVAE 357
AI ++G+ LDGR I VN A+
Sbjct: 63 AIEEMNGKELDGRVITVNEAQ 83
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 26/102 (25%)
Query: 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN 220
+ FVG L + + E L F + G V + ++I +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDS--------------------------KIIND 40
Query: 221 RETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
RE+ RSRGFGFVT + A+E + ++DGR++TVN+A
Sbjct: 41 RESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 21/188 (11%)
Query: 187 EIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 246
EI E +F LFG G + +SL++ + D+ RGFGFV + E A+KAV+
Sbjct: 271 EITEQEFSDLFGQFG------EITSLSLVK----DQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 247 FHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP----------GFRIYVGNLPWEVDNARL 296
+ + G+ L V +A + + E + +E G +++ NL EVD+ RL
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 297 EQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356
+ FS G + +A+++ D E G+S+GFGFV ++ E N A+ ++ + L G+ + V +A
Sbjct: 381 KAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 357 EDRQRRSS 364
+ ++ R S
Sbjct: 440 QRKEVRRS 447
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 35/209 (16%)
Query: 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQ 216
P A L+VG L V AMLFE LF + G V+ ++
Sbjct: 77 PTSASLYVGELDPSVTE---AMLFE--------------LFNSIG---------PVASIR 110
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V + T RS G+ +V +E+ EKA++ + I GR + +R P +
Sbjct: 111 VCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI-------MWSQRDPSLR 163
Query: 277 EPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+ G +++ NL +DN L FS GK+++ +V D E G ++G+GFV S N
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESAN 222
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ + + V R+ R S
Sbjct: 223 AAIEHVNGMLLNDKKVYVGHHVSRRERQS 251
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 27/98 (27%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
LF+ NL +VD E+L F GT+ A+ I
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAK---------------------------IMTD 398
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
E +S+GFGFV +T EEA KAV ++ + G+ L V
Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 99/215 (46%), Gaps = 41/215 (19%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
++V NLP DVD + L LF + G +L V R
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFG----------------------------KMLSVKVMR 224
Query: 222 E-TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE--- 277
+ + SR FGFV EEA+KAV + ++ GRLL +A R + R FE
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
Query: 278 -------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
G +YV NL +D+ +L + FS +G + +A+V+ E G S+GFGFV SS
Sbjct: 285 QDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSS 342
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 343 PEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAI 377
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIY 219
A L+VG+L DV AML+EK F G + ++V
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEK--------------FSPAG---------PILSIRVCR 44
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 279
+ T RS G+ ++ +AE+A++ + + G+ + + + +R P + + G
Sbjct: 45 DVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWS-------QRDPGLRKSG 97
Query: 280 F-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
I++ NL +DN L FS G +++ +V D E G SRGFGFV + AI
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETHEAAQQAI 155
Query: 339 AALDGQNLDGRAIRVNVAEDRQRR 362
++G L+ R + V + R+ R
Sbjct: 156 NTMNGMLLNDRKVFVGHFKSRRER 179
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
V+ E +S+GFGFV EA+KAV+ H D G+ L V +A + + E R +
Sbjct: 257 VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 277 EP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFV 326
E G +Y+ N+P D+ RL + F+ G + + +++ +G SRGFGFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIM-RAPSGVSRGFGFV 375
Query: 327 TMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
S+ E N A++ ++G+ LD R + V +A+ + R
Sbjct: 376 CYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVR 411
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 3/164 (1%)
Query: 199 NQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT 258
N+ H A + +V N ET S G+GFV T E AE A++ + ++ + +
Sbjct: 148 NKALHDTFAAFGNILSCKVATN-ETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVY 205
Query: 259 VNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 318
V PR + + +Y N+ EV + E++F++ GK+ + + D E G
Sbjct: 206 VGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRD-EDG 264
Query: 319 RSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
+S+GFGFV E A+ L + G+ + V A+ + R
Sbjct: 265 KSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSER 308
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 36/207 (17%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVI 218
+ L+VG L V L +F GT V+ ++V
Sbjct: 46 NTSLYVGELDPSVTEAMLFEIFSMIGT--------------------------VASIRVC 79
Query: 219 YNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP 278
+ T RS G+ +V + E+A+E + I R + + +R P +
Sbjct: 80 RDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWS-------QRDPALRRT 132
Query: 279 G-FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
G I++ NL +DN L F+ G +++ +V + ETG S G+GFV + A
Sbjct: 133 GQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATN-ETG-SLGYGFVHYETAEAAEAA 190
Query: 338 IAALDGQNLDGRAIRVNVAEDRQRRSS 364
I ++G L+ + + V R+ R +
Sbjct: 191 IKHVNGMLLNDKKVYVGHHIPRKERQA 217
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 39/209 (18%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQV 217
E K+F+G L +D + L F K GTV + L++
Sbjct: 157 ESCKMFIGGLNWDTTEDNLREYFGKYGTV--------------------------TDLKI 190
Query: 218 IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE 277
+ + T RSRGFGF++ ++ V+ H +DG+++ +A PR Q +
Sbjct: 191 MKDPATGRSRGFGFLSFEKPSSVDEVVKTQHI--LDGKVIDPKRAIPRDEQDKTG----- 243
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
+I+VG + +V E+ FS+ G +++A+++ D++TG+SRGFGFVT S + D
Sbjct: 244 ---KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV-DR 299
Query: 338 IAALDGQNLDGRAIRVNVAEDR--QRRSS 364
+ + R I + AE R Q++SS
Sbjct: 300 VCQNKFIDFKDRKIEIKRAEPRHMQQKSS 328
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340
+I+VG + + D L + FS++G+VV+A+++ DRETGRSRGF FVT +S E ++A+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 341 LDGQNLDGRAIRVNVA 356
LDGQ+L GR IRVN A
Sbjct: 94 LDGQDLHGRRIRVNYA 109
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 27/103 (26%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIY 219
+K+FVG + Y D L F K G E+ + K +I
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYG--EVVDAK------------------------IIV 67
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262
+RET RSRGF FVT ++ EEA A+++ D+ GR + VN A
Sbjct: 68 DRETGRSRGFAFVTFTSTEEASNAMQL-DGQDLHGRRIRVNYA 109
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 12/154 (7%)
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE---- 277
++ RSRGFGFV EEA+KAV + +++GR++ V +A R + R FE
Sbjct: 226 DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQ 285
Query: 278 ------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + F +G + +A+V+ E G S+GFGFV SS
Sbjct: 286 ERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK-AAPRGTQPERAPRVFEPGFRIYV 284
SRG+GFV T E A +A++ + ++ R + V + R + E +V E +Y+
Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME-FTNVYI 195
Query: 285 GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 344
N ++D+ RL ++FS G ++ +V+ D ++GRSRGFGFV + E A++ ++G+
Sbjct: 196 KNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGK 254
Query: 345 NLDGRAIRVNVAEDRQRRSS 364
++GR I V A+ R R S
Sbjct: 255 EVNGRMIYVGRAQKRIERQS 274
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIY 219
A L++G+L DV AML+EK F G M + +V
Sbjct: 11 ASLYIGDLHPDVTE---AMLYEK--------------FSPAGPIMSI---------RVCR 44
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 279
+ T RS + ++ +AE+A++ + I GR + + + +R P + + G
Sbjct: 45 DIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSG 97
Query: 280 F-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
+++ NL +DN L FS G +++ +VV D E G SRG+GFV + N AI
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETHEAANRAI 155
Query: 339 AALDGQNLDGRAIRVNVAEDRQRR 362
++G L+ R + V + R+ R
Sbjct: 156 QTMNGMLLNDRKVFVGHFKSRRER 179
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 33/122 (27%)
Query: 137 ERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFL 196
ERQ E + ++E + + L+V NL +D ++L F GT+ A+V
Sbjct: 271 ERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM---- 326
Query: 197 FGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL 256
+G H S+GFGFV S+ EEA KAV +++GR+
Sbjct: 327 --TEGGH----------------------SKGFGFVCFSSPEEATKAVT-----EMNGRI 357
Query: 257 LT 258
++
Sbjct: 358 VS 359
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE----- 277
+ RSRGFGFV EEA+KAV + +++GR++ V +A R + R FE
Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQE 286
Query: 278 -----PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSET 332
G +YV NL +D+ RL + FS +G + + +V+ E G S+GFGFV SS
Sbjct: 287 RINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPE 344
Query: 333 ELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 36/204 (17%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIY 219
A L++G+L DV AML+EK F G M + +V
Sbjct: 11 ASLYIGDLHPDVTE---AMLYEK--------------FSPAGPIMSI---------RVCR 44
Query: 220 NRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG 279
+ T RS G+ ++ +AE+A++ + I GR + + + +R P + + G
Sbjct: 45 DIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSG 97
Query: 280 F-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
+++ NL +DN L FS G +++ +VV D E G SRG+GFV ++ N AI
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAI 155
Query: 339 AALDGQNLDGRAIRVNVAEDRQRR 362
++G L+ R + V + R+ R
Sbjct: 156 QTMNGMLLNDRKVFVGHFKSRRER 179
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
A R P +Y+G+L +V A L + FS G +++ RV D T RS G+ ++
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 332 TELNDAIAALDGQNLDGRAIRV 353
+ A+ ++ + + GR IR+
Sbjct: 63 ADAERALDTMNFEVIKGRPIRI 84
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 36/130 (27%)
Query: 132 VVEAGERQEESGE-EGVFEE--EEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI 188
V A +R E GE + FE+ +E + + L+V NL +D ++L F GT+
Sbjct: 263 VGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITS 322
Query: 189 AEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH 248
+V +G H S+GFGFV S+ EEA KAV
Sbjct: 323 TKVM------TEGGH----------------------SKGFGFVCFSSPEEATKAVT--- 351
Query: 249 RYDIDGRLLT 258
+++GR+++
Sbjct: 352 --EMNGRIVS 359
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 36/216 (16%)
Query: 148 FEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVC 207
F ++ EP KLF+G L Y E L FEK G +
Sbjct: 19 FPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNI--------------------- 57
Query: 208 AVFYVSLLQVIYNRETDRSRGFGFVTMS---TVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264
V ++ V+ + T RSRGFGF+T S ++EA+K+ + IDGR++ +A P
Sbjct: 58 ----VDVV-VMKDPRTKRSRGFGFITYSHSSMIDEAQKS----RPHKIDGRVVEPKRAVP 108
Query: 265 RGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFG 324
R Q +P +++VG L + D + F G +V+ +V D+ETG+ RGF
Sbjct: 109 R--QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFA 166
Query: 325 FVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
FV + D + L+G+ + V A +Q
Sbjct: 167 FVEFDDYDPV-DKVVLQKQHQLNGKMVDVKKALPKQ 201
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 14/156 (8%)
Query: 222 ETD---RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEP 278
ETD +SRGFGFV E A AV+ + +IDG+ L V +A + + + R++E
Sbjct: 271 ETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYES 330
Query: 279 ----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTM 328
G ++V NL +D+ +LE+ F G + +ARV+ D + G+S+GFGFV
Sbjct: 331 TRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCF 389
Query: 329 SSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
SS E AI ++ + + G+ + V +A+ + R S
Sbjct: 390 SSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRS 425
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 193 FHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI 252
H N+ H A + +V + E +S+ FGFV T E AE A+E + +
Sbjct: 153 LHPAIDNKALHDTFSAFGRILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLL 211
Query: 253 DGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVV 312
+ R + V K + + + + +YV NL EVDNA+ E++F G V + +
Sbjct: 212 NDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLE 271
Query: 313 YDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362
D+E G+SRGFGFV + +A+ ++ + +DG+ + V A+ ++ R
Sbjct: 272 TDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRER 320
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
VS ++V + T +S G+ +V + +A+E + +DGR + + +R
Sbjct: 84 VSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWS-------QR 136
Query: 272 APRVFEPG-FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
P + G I++ NL +DN L FS G++++ +V D E G+S+ FGFV +
Sbjct: 137 DPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGQSKCFGFVHYET 195
Query: 331 ETELNDAIAALDGQNLDGRAIRVNV-AEDRQRRSSF 365
AI ++G L+ R + V R R S F
Sbjct: 196 AEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKF 231
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YVG L V+ A L ++FS G+V + RV D T +S G+ +V + + AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 342 DGQNLDGRAIRV 353
+ +DGR R+
Sbjct: 120 NYSLVDGRPCRI 131
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 27/98 (27%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
LFV NL +DSEKL F+ GT+ A V
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD--------------------------- 376
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
+ +S+GFGFV S+ EEA KA+ ++ I G+ L V
Sbjct: 377 DAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 34/203 (16%)
Query: 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQV 217
E KLFVG L ++ E L+ F + G + + V V
Sbjct: 5 ERGKLFVGGLSWETTQENLSRYFCRFGDI-------------------IDCV-------V 38
Query: 218 IYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ-PERAPRVF 276
+ N E+ RSRGFGFVT + ++ + +DGR + PR Q P++
Sbjct: 39 MKNNESGRSRGFGFVTFADPTNVNHVLQN-GPHTLDGRTIDPKPCNPRTLQKPKKGG--- 94
Query: 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELND 336
G+++++G LP V L F+ +GKV ++YD+E +SRGFGF++ E+ + +
Sbjct: 95 --GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSV-E 151
Query: 337 AIAALDGQNLDGRAIRVNVAEDR 359
+ NL+G+ + + AE R
Sbjct: 152 HVTNERYINLNGKQVEIKKAEPR 174
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+++ N D+D E+L LF K G +L +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGP---------------------------ALSVKVMTD 225
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE---- 277
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 278 ------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 41/209 (19%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+F+ NL +D++ L F G + +V VC
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKV--------------VC-------------- 132
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ + S+G+GFV T E AE+A+E + ++ R + V G R R E G R
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------GRFKSRKEREAELGAR 186
Query: 282 ------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+Y+ N ++D+ RL+++F + G ++ +V+ D E+G+S+GFGFV+ +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
A+ ++G+ L+G+ I V A+ + R +
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P +YVG+L +V A L + FS G +++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 338 IAALDGQNLD---GRAIRV 353
ALD N D G+ +R+
Sbjct: 66 ERALDTMNFDVIKGKPVRI 84
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 39/214 (18%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+++ N D+D E+L LF K G +L +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGP---------------------------ALSVKVMTD 225
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPG-- 279
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ 285
Query: 280 --------FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
+YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365
E A+ ++G+ + + + V +A+ ++ R ++
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAY 377
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 42/207 (20%)
Query: 160 AKLFVGNLPYDVDSEKLAMLFEK---AGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQ 216
A L+VG+L DV AML+EK AG + + +C
Sbjct: 11 ASLYVGDLHPDVTE---AMLYEKFSPAGPI---------------LSIRICRDLI----- 47
Query: 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVF 276
T S + +V ++AE A++ + I G+ + + + +R P +
Sbjct: 48 ------TSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWS-------QRDPSLR 94
Query: 277 EPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+ G I+V NL ++N L S G +++ VV D E G S+G+GFV +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAE 152
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRR 362
AI ++G L+GR + V + R+ R
Sbjct: 153 RAIKKMNGMLLNGRKVFVGQFKSRKER 179
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P +YVG+L +V A L + FS G +++ R+ D T S + +V DA
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ---HTKDA 65
Query: 338 IAALDGQNLD---GRAIRV 353
ALD N D G+ +R+
Sbjct: 66 EHALDTMNFDVIKGKPVRI 84
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 12/150 (8%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE------- 277
+S+GFGFV+ E+A KAVE + +I G+++ V +A + + R FE
Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI 288
Query: 278 ---PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETEL 334
G +Y+ NL +D+ +L + FS G + +A+V+ E GRS+GFGFV SS E
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEA 346
Query: 335 NDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
A+ ++G+ + + + V +A+ ++ R +
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVG 285
S+G+ FV T E A+KA+E + ++ R + V + R + + +Y+
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 286 NLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345
N EVD+ L+++FS+ GK ++ +V+ D G+S+GFGFV+ + N A+ ++G+
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 346 LDGRAIRVNVAEDRQRRSS 364
+ G+ I V A+ + R +
Sbjct: 256 ISGKIIFVGRAQKKVERQA 274
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P +YVG+L +V A L + FS G V++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 338 IAALDGQNLD---GRAIRV 353
ALD N D G+ IR+
Sbjct: 66 ERALDTMNFDVIKGKPIRI 84
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 33/121 (27%)
Query: 137 ERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFL 196
ERQ E + ++E + + L++ NL +D EKL F G++ A+V
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--- 327
Query: 197 FGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL 256
E RS+GFGFV S+ EEA KAV +++GR+
Sbjct: 328 -------------------------EDGRSKGFGFVCFSSPEEATKAVT-----EMNGRI 357
Query: 257 L 257
+
Sbjct: 358 V 358
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+++ N D+D E+L LF K G +L +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGP---------------------------ALSVKVMTD 225
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE---- 277
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 278 ------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 41/209 (19%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+F+ NL +D++ L F G + +V VC
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKV--------------VC-------------- 132
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ + S+G+GFV T E AE+A+E + ++ R + V G R R E G R
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------GRFKSRKEREAELGAR 186
Query: 282 ------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+Y+ N ++D+ RL+++F + G ++ +V+ D E+G+S+GFGFV+ +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
A+ ++G+ L+G+ I V A+ + R +
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P +YVG+L +V A L + FS G +++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 338 IAALDGQNLD---GRAIRV 353
ALD N D G+ +R+
Sbjct: 66 ERALDTMNFDVIKGKPVRI 84
>sp|Q7SZT7|ELAV4_XENLA ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1
Length = 400
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 19/216 (8%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQ---GFHMWVCAVFYV 212
+D+K L V LP ++ E+ LF G +E ++ + G Q F +
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWK 106
Query: 213 SLLQ--VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE 270
L + I+ + +S G+GFV ++AEKA+ + + + + V+ A P
Sbjct: 107 PLTEEGPIFGK--GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR 164
Query: 271 RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
A +YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+
Sbjct: 165 DA--------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 216
Query: 331 ETELNDAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
E +AI L+GQ G A I V A + +++S
Sbjct: 217 RIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTS 252
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 243 AVEMFHRYDIDG--RLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVF 300
V+ F IDG L+ +N GT G+ I+V NL + D + L Q+F
Sbjct: 289 GVKRFSPITIDGMTSLVGMNIPGHTGT-----------GWCIFVYNLSPDSDESVLWQLF 337
Query: 301 SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360
G V N +V+ D T + +GFGFVTM++ E AIA+L+G L R ++V+ ++
Sbjct: 338 GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKT 397
Query: 361 RRS 363
+S
Sbjct: 398 HKS 400
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
V+ ++VI + T++ +GFGFVTM+ +EA A+ + Y + R+L V
Sbjct: 343 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 390
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 36/193 (18%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLL 215
ED+K L V LP ++ E+L LF G +E
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC-------------------------- 96
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 97 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 153
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 154 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 208
Query: 336 DAIAALDGQNLDG 348
+AI L+GQ G
Sbjct: 209 EAIKGLNGQKPPG 221
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 73/251 (29%)
Query: 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVI 218
DA L+V LP + ++L LF + G + + +++
Sbjct: 152 DANLYVSGLPKTMTQKELEQLFSQYGRIITS--------------------------RIL 185
Query: 219 YNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRL--LTVNKA-------------- 262
++ T SRG GF+ EAE+A++ + G +TV A
Sbjct: 186 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQ 245
Query: 263 ----------APRGTQPERAPRVFEP--------------------GFRIYVGNLPWEVD 292
P Q +R R F P G+ I+V NL + D
Sbjct: 246 LYQSPNRRYPGPLAQQAQRFSR-FSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDAD 304
Query: 293 NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352
+ L Q+F G V N +V+ D T + +GFGFVTM++ E AIA+L+G L R ++
Sbjct: 305 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 364
Query: 353 VNVAEDRQRRS 363
V+ + ++
Sbjct: 365 VSFKTSKTHKA 375
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 342 DGQNLDGRAIRVNVA 356
+G L + I+V+ A
Sbjct: 129 NGLRLQTKTIKVSYA 143
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE------- 277
+S+GFGFV E A KAV+ + +I+G+ + V +A + + E + +E
Sbjct: 270 KSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKL 329
Query: 278 ---PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETEL 334
G +++ NL +D+ +LE+ F G + +ARV+ D ETG+S+GFGFV SS E
Sbjct: 330 SKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEA 388
Query: 335 NDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++ + + G+ + V +A+ + R S
Sbjct: 389 TKAITEMNQRMIYGKPLYVALAQRKDVRRS 418
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER 271
V+ ++V + T +S G+ +V E+ EKA+E + I+GR + +R
Sbjct: 77 VASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRI-------MWSQR 129
Query: 272 APRVFEPG-FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330
P + G I++ NL +DN L F+ GK+++ +V D + G S+ FGFV +
Sbjct: 130 DPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYET 188
Query: 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
AI ++G L+ R + V ++ R S
Sbjct: 189 AEAAEAAIENVNGMLLNDREVYVGKHISKKDRES 222
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+YVG L V+ A L ++FS G+V + RV D T +S G+ +V + AI L
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 342 DGQNLDGRAIRV 353
+ ++GR R+
Sbjct: 113 NYSLIEGRPCRI 124
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+Y N+ + +++F +GK+ + + D E G+S+GFGFV + A+ L
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFGFVNFENHESAVKAVDEL 292
Query: 342 DGQNLDGRAIRVNVAEDRQRR 362
+ + ++G+ I V A+ ++ R
Sbjct: 293 NDKEINGQKIYVGRAQKKRER 313
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 27/98 (27%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
LF+ NL +DSEKL F+ G++ A V
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD--------------------------- 369
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
ET +S+GFGFV S+ EEA KA+ ++ I G+ L V
Sbjct: 370 ETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+++ N D+D E+L LF K G +L +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGP---------------------------ALSVKVMTD 225
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE---- 277
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 278 ------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 41/209 (19%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+F+ NL +D++ L F G + +V VC
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKV--------------VC-------------- 132
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ + S+G+GFV T E AE+A+E + ++ R + V G R R E G R
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------GRFKSRKEREAELGAR 186
Query: 282 ------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+Y+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
A+ ++G+ L+G+ I V A+ + R +
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P +YVG+L + A L + FS G +++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 338 IAALDGQNLD---GRAIRV 353
ALD N D G+ +R+
Sbjct: 66 ERALDTMNFDVIKGKPVRI 84
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+++ N D+D E+L LF K G +L +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGP---------------------------ALSVKVMTD 225
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE---- 277
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 278 ------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 41/209 (19%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+F+ NL +D++ L F G + +V VC
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKV--------------VC-------------- 132
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ + S+G+GFV T E AE+A+E + ++ R + V G R R E G R
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------GRFKSRKEREAELGAR 186
Query: 282 ------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+Y+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
A+ ++G+ L+G+ I V A+ + R +
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P +YVG+L +V A L + FS G +++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 338 IAALDGQNLD---GRAIRV 353
ALD N D G+ +R+
Sbjct: 66 ERALDTMNFDVIKGKPVRI 84
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+++ N D+D E+L LF K G +L +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGP---------------------------ALSVKVMTD 225
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFE---- 277
E+ +S+GFGFV+ E+A+KAV+ + +++G+ + V +A + + R FE
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 278 ------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE 331
G +YV NL +D+ RL + FS G + +A+V+ E GRS+GFGFV SS
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSP 343
Query: 332 TELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
E A+ ++G+ + + + V +A+ ++ R +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 41/209 (19%)
Query: 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR 221
+F+ NL +D++ L F G + +V VC
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKV--------------VC-------------- 132
Query: 222 ETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFR 281
+ + S+G+GFV T E AE+A+E + ++ R + V G R R E G R
Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------GRFKSRKEREAELGAR 186
Query: 282 ------IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+Y+ N ++D+ RL+ +F + G ++ +V+ D E+G+S+GFGFV+ +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 336 DAIAALDGQNLDGRAIRVNVAEDRQRRSS 364
A+ ++G+ L+G+ I V A+ + R +
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDA 337
P +YVG+L +V A L + FS G +++ RV D T RS G+ +V DA
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA---DA 65
Query: 338 IAALDGQNLD---GRAIRV 353
ALD N D G+ +R+
Sbjct: 66 ERALDTMNFDVIKGKPVRI 84
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 38/211 (18%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLL 215
+D+K L V LP ++ E+ LF G +E ++
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL------------------------ 70
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 71 --VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 125
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 126 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 181 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 211
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHKS 373
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
V+ ++VI + T++ +GFGFVTM+ +EA A+ + Y + R+L V
Sbjct: 316 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 363
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 36/193 (18%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLL 215
ED+K L V LP ++ E+L LF G +E
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC-------------------------- 68
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 125
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 126 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 336 DAIAALDGQNLDG 348
+AI L+GQ G
Sbjct: 181 EAIKGLNGQKPPG 193
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 276 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ ++
Sbjct: 336 ASLNGYRLGDRVLQVSFKTNKTHKA 360
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 342 DGQNLDGRAIRVNVA 356
+G L + I+V+ A
Sbjct: 101 NGLRLQTKTIKVSYA 115
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
V+ ++VI + T++ +GFGFVTM+ +EA A+ + Y + R+L V
Sbjct: 303 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 350
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 38/211 (18%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLL 215
+D+K L V LP ++ E+ LF G +E
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESC-------------------------- 75
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 132
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 133 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
Query: 336 DAIAALDGQNLDGRA--IRVNVAEDRQRRSS 364
+AI L+GQ G I V A + ++SS
Sbjct: 188 EAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ +S
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHKS 380
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
V+ ++VI + T++ +GFGFVTM+ +EA A+ + Y + R+L V
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 370
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 36/193 (18%)
Query: 158 EDAK--LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLL 215
ED+K L V LP ++ E+L LF G +E
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC-------------------------- 68
Query: 216 QVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV 275
+++ ++ T +S G+GFV ++AEKA+ + + + + V+ A P A
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--- 125
Query: 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335
+YV LP + LEQ+FS++G+++ +R++ D+ TG SRG GF+ E
Sbjct: 126 -----NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 336 DAIAALDGQNLDG 348
+AI L+GQ G
Sbjct: 181 EAIKGLNGQKPPG 193
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338
G+ I+V NL + D + L Q+F G V N +V+ D T + +GFGFVTM++ E AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 339 AALDGQNLDGRAIRVNVAEDRQRRS 363
A+L+G L R ++V+ ++ ++
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHKA 359
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341
+ V LP + L+ +F G++ + ++V D+ TG+S G+GFV + AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 342 DGQNLDGRAIRVNVA 356
+G L + I+V+ A
Sbjct: 101 NGLRLQTKTIKVSYA 115
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 212 VSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259
V+ ++VI + T++ +GFGFVTM+ +EA A+ + Y + R+L V
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,819,247
Number of Sequences: 539616
Number of extensions: 6309890
Number of successful extensions: 33967
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 636
Number of HSP's that attempted gapping in prelim test: 23331
Number of HSP's gapped (non-prelim): 6480
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)