Query 017842
Match_columns 365
No_of_seqs 318 out of 2407
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.3E-32 7.2E-37 260.9 23.2 172 157-362 105-278 (346)
2 TIGR01645 half-pint poly-U bin 100.0 3.7E-31 8.1E-36 266.5 22.1 178 158-361 106-286 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.8E-30 1E-34 248.5 24.4 179 158-362 88-352 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.9E-29 4.1E-34 244.3 22.7 168 159-360 3-172 (352)
5 KOG0148 Apoptosis-promoting RN 100.0 2.4E-29 5.2E-34 223.1 17.0 197 158-360 5-239 (321)
6 TIGR01622 SF-CC1 splicing fact 100.0 1.3E-28 2.9E-33 246.7 23.0 176 157-359 87-266 (457)
7 TIGR01628 PABP-1234 polyadenyl 100.0 4.4E-27 9.5E-32 241.5 20.8 167 161-360 2-168 (562)
8 KOG0127 Nucleolar protein fibr 99.9 2.7E-27 5.9E-32 227.2 16.5 176 159-361 5-198 (678)
9 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-26 2.8E-31 235.3 21.9 183 156-359 172-375 (509)
10 KOG0117 Heterogeneous nuclear 99.9 5.6E-27 1.2E-31 220.5 15.7 178 151-362 75-334 (506)
11 KOG0131 Splicing factor 3b, su 99.9 5.7E-27 1.2E-31 197.1 13.4 172 158-362 8-180 (203)
12 TIGR01628 PABP-1234 polyadenyl 99.9 2.6E-26 5.6E-31 235.8 20.8 175 158-360 177-365 (562)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 1.7E-25 3.7E-30 225.2 22.6 168 156-361 55-309 (578)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.6E-25 7.9E-30 224.7 22.5 175 158-358 294-501 (509)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.2E-25 9.1E-30 222.3 22.4 166 158-359 1-174 (481)
16 KOG0145 RNA-binding protein EL 99.9 9E-26 2E-30 199.2 14.6 169 159-361 41-211 (360)
17 KOG0144 RNA-binding protein CU 99.9 8.9E-26 1.9E-30 211.6 14.2 169 158-360 33-207 (510)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.6E-24 3.5E-29 218.1 22.5 170 157-359 273-480 (481)
19 KOG0145 RNA-binding protein EL 99.9 2.4E-24 5.2E-29 190.2 16.6 178 157-360 125-359 (360)
20 KOG0127 Nucleolar protein fibr 99.9 3.5E-24 7.7E-29 205.9 18.3 175 159-360 117-379 (678)
21 KOG0110 RNA-binding protein (R 99.9 7.5E-24 1.6E-28 209.6 15.2 175 161-359 517-693 (725)
22 TIGR01622 SF-CC1 splicing fact 99.9 2E-22 4.4E-27 202.0 21.7 171 159-359 186-448 (457)
23 KOG0109 RNA-binding protein LA 99.9 3.6E-23 7.9E-28 185.5 11.2 151 161-363 4-154 (346)
24 KOG0124 Polypyrimidine tract-b 99.9 9.8E-23 2.1E-27 187.5 9.3 175 159-359 113-290 (544)
25 KOG0123 Polyadenylate-binding 99.9 7E-21 1.5E-25 183.8 17.4 153 161-361 3-155 (369)
26 KOG4205 RNA-binding protein mu 99.8 6.6E-21 1.4E-25 178.2 11.3 174 158-361 5-178 (311)
27 KOG0147 Transcriptional coacti 99.8 5.8E-21 1.3E-25 184.7 6.9 180 155-361 175-360 (549)
28 KOG0123 Polyadenylate-binding 99.8 7.4E-19 1.6E-23 169.8 15.1 168 162-359 79-246 (369)
29 TIGR01645 half-pint poly-U bin 99.8 7.8E-18 1.7E-22 170.3 22.3 81 158-264 203-283 (612)
30 KOG0105 Alternative splicing f 99.8 9.1E-18 2E-22 141.8 14.8 154 158-347 5-176 (241)
31 KOG0146 RNA-binding protein ET 99.8 1.7E-18 3.7E-23 153.8 10.1 183 156-365 16-371 (371)
32 KOG0144 RNA-binding protein CU 99.7 7.7E-18 1.7E-22 158.5 11.4 82 280-361 425-506 (510)
33 PLN03134 glycine-rich RNA-bind 99.7 1.7E-17 3.7E-22 140.2 12.2 85 277-361 32-116 (144)
34 KOG1548 Transcription elongati 99.7 1.3E-16 2.9E-21 146.6 18.5 185 155-362 130-355 (382)
35 KOG4206 Spliceosomal protein s 99.7 1.3E-16 2.8E-21 139.6 16.6 166 158-357 8-220 (221)
36 KOG0113 U1 small nuclear ribon 99.7 5.3E-17 1.1E-21 146.6 9.7 82 158-265 100-181 (335)
37 KOG0147 Transcriptional coacti 99.7 9.6E-17 2.1E-21 155.6 12.0 167 160-357 279-526 (549)
38 KOG4211 Splicing factor hnRNP- 99.7 1.1E-15 2.4E-20 146.5 16.9 168 158-357 9-180 (510)
39 KOG4212 RNA-binding protein hn 99.6 5.9E-15 1.3E-19 139.3 17.0 171 158-356 43-291 (608)
40 PLN03134 glycine-rich RNA-bind 99.6 1.8E-15 3.9E-20 127.9 11.9 84 158-267 33-116 (144)
41 KOG0110 RNA-binding protein (R 99.6 2.3E-15 5.1E-20 149.7 14.0 171 157-359 383-598 (725)
42 PF00076 RRM_1: RNA recognitio 99.6 3.4E-15 7.4E-20 109.7 9.9 70 282-352 1-70 (70)
43 COG0724 RNA-binding proteins ( 99.6 8.9E-15 1.9E-19 134.6 13.8 162 159-346 115-292 (306)
44 KOG0106 Alternative splicing f 99.6 2E-15 4.4E-20 133.4 8.3 154 160-355 2-167 (216)
45 KOG1457 RNA binding protein (c 99.6 4E-14 8.7E-19 123.2 14.7 161 157-346 32-273 (284)
46 TIGR01659 sex-lethal sex-letha 99.6 8.4E-15 1.8E-19 140.8 11.7 85 275-359 103-187 (346)
47 KOG0121 Nuclear cap-binding pr 99.6 6.7E-15 1.5E-19 117.5 7.5 78 279-356 36-113 (153)
48 KOG0149 Predicted RNA-binding 99.5 1.5E-14 3.3E-19 127.1 8.2 78 280-358 13-90 (247)
49 PF14259 RRM_6: RNA recognitio 99.5 4.5E-14 9.7E-19 104.2 9.3 70 282-352 1-70 (70)
50 KOG0122 Translation initiation 99.5 3.2E-14 6.8E-19 125.6 9.7 83 278-360 188-270 (270)
51 PF00076 RRM_1: RNA recognitio 99.5 4.7E-14 1E-18 103.6 9.0 70 162-258 1-70 (70)
52 KOG4207 Predicted splicing fac 99.5 1.3E-14 2.9E-19 124.8 6.6 82 276-357 10-91 (256)
53 TIGR01648 hnRNP-R-Q heterogene 99.5 7.3E-14 1.6E-18 141.4 12.8 118 236-357 18-136 (578)
54 PLN03120 nucleic acid binding 99.5 8.9E-14 1.9E-18 126.1 11.2 77 279-359 4-80 (260)
55 KOG0149 Predicted RNA-binding 99.5 4.3E-14 9.3E-19 124.3 7.3 80 158-264 11-90 (247)
56 KOG0126 Predicted RNA-binding 99.5 3.5E-15 7.6E-20 126.0 0.1 83 280-362 36-118 (219)
57 KOG0125 Ataxin 2-binding prote 99.5 1.5E-13 3.3E-18 125.8 9.3 81 278-360 95-175 (376)
58 KOG0148 Apoptosis-promoting RN 99.5 1.3E-13 2.9E-18 123.2 8.3 102 256-360 42-143 (321)
59 KOG0107 Alternative splicing f 99.5 1.7E-13 3.6E-18 115.3 8.4 78 279-361 10-87 (195)
60 KOG0113 U1 small nuclear ribon 99.5 2.8E-13 6.1E-18 122.6 10.1 85 277-361 99-183 (335)
61 PLN03213 repressor of silencin 99.5 2.1E-13 4.5E-18 130.6 9.5 78 278-359 9-88 (759)
62 KOG0129 Predicted RNA-binding 99.5 3.3E-12 7.1E-17 123.7 17.3 160 153-339 253-431 (520)
63 KOG0120 Splicing factor U2AF, 99.4 3.4E-13 7.3E-18 132.6 10.2 175 158-358 288-491 (500)
64 PF14259 RRM_6: RNA recognitio 99.4 4.3E-13 9.3E-18 98.9 8.4 70 162-258 1-70 (70)
65 KOG0131 Splicing factor 3b, su 99.4 1.6E-13 3.5E-18 116.1 6.4 81 280-360 10-90 (203)
66 PLN03121 nucleic acid binding 99.4 9.3E-13 2E-17 117.7 11.2 77 278-358 4-80 (243)
67 smart00362 RRM_2 RNA recogniti 99.4 1E-12 2.2E-17 95.8 9.3 72 281-354 1-72 (72)
68 KOG1190 Polypyrimidine tract-b 99.4 6.6E-12 1.4E-16 118.1 16.4 165 159-358 297-490 (492)
69 PLN03120 nucleic acid binding 99.4 1.3E-12 2.7E-17 118.7 11.0 78 159-266 4-81 (260)
70 KOG0111 Cyclophilin-type pepti 99.4 1.6E-13 3.4E-18 119.2 4.2 82 279-360 10-91 (298)
71 smart00360 RRM RNA recognition 99.4 1.5E-12 3.2E-17 94.6 8.5 71 284-354 1-71 (71)
72 KOG0108 mRNA cleavage and poly 99.4 5.9E-13 1.3E-17 130.1 8.3 82 280-361 19-100 (435)
73 KOG0122 Translation initiation 99.4 1.5E-12 3.3E-17 115.0 9.5 82 158-265 188-269 (270)
74 PLN03213 repressor of silencin 99.4 1.5E-12 3.2E-17 124.9 9.7 78 158-265 9-88 (759)
75 KOG4212 RNA-binding protein hn 99.4 1.8E-11 3.9E-16 116.0 16.7 72 280-356 537-608 (608)
76 KOG0124 Polypyrimidine tract-b 99.4 1.9E-11 4.1E-16 113.4 16.1 173 158-356 209-532 (544)
77 KOG0117 Heterogeneous nuclear 99.4 5.4E-12 1.2E-16 119.9 12.8 124 231-359 38-164 (506)
78 KOG0121 Nuclear cap-binding pr 99.4 1.3E-12 2.7E-17 104.6 7.2 81 158-264 35-115 (153)
79 KOG0114 Predicted RNA-binding 99.4 4.7E-12 1E-16 97.6 9.4 82 155-265 14-95 (124)
80 KOG4210 Nuclear localization s 99.4 1.6E-12 3.4E-17 121.5 8.2 178 158-362 87-267 (285)
81 cd00590 RRM RRM (RNA recogniti 99.4 8.6E-12 1.9E-16 91.3 10.2 74 281-355 1-74 (74)
82 COG0724 RNA-binding proteins ( 99.3 4.9E-12 1.1E-16 116.3 10.6 79 279-357 115-193 (306)
83 KOG0114 Predicted RNA-binding 99.3 6.4E-12 1.4E-16 96.9 8.9 77 279-358 18-94 (124)
84 KOG0125 Ataxin 2-binding prote 99.3 7.7E-12 1.7E-16 114.7 9.9 81 158-266 95-175 (376)
85 smart00362 RRM_2 RNA recogniti 99.3 1.9E-11 4.2E-16 89.0 9.5 72 161-260 1-72 (72)
86 KOG1190 Polypyrimidine tract-b 99.3 5.8E-11 1.3E-15 111.8 14.5 165 158-358 149-372 (492)
87 KOG0130 RNA-binding protein RB 99.3 9.8E-12 2.1E-16 100.3 7.8 89 272-360 65-153 (170)
88 PLN03121 nucleic acid binding 99.3 1.7E-11 3.6E-16 109.7 10.0 78 158-265 4-81 (243)
89 KOG0126 Predicted RNA-binding 99.3 5.3E-13 1.2E-17 112.9 0.2 84 158-267 34-117 (219)
90 KOG0120 Splicing factor U2AF, 99.3 8.8E-12 1.9E-16 122.7 8.4 182 158-360 174-370 (500)
91 smart00361 RRM_1 RNA recogniti 99.3 2.7E-11 5.9E-16 89.5 8.2 62 293-354 2-70 (70)
92 PF13893 RRM_5: RNA recognitio 99.2 3.6E-11 7.8E-16 84.7 7.8 56 296-356 1-56 (56)
93 smart00360 RRM RNA recognition 99.2 4.7E-11 1E-15 86.5 8.6 71 164-260 1-71 (71)
94 KOG4207 Predicted splicing fac 99.2 1.4E-11 3E-16 106.3 6.1 79 159-263 13-91 (256)
95 KOG0107 Alternative splicing f 99.2 2.6E-11 5.7E-16 102.2 7.3 79 158-267 9-87 (195)
96 KOG1365 RNA-binding protein Fu 99.2 4.3E-11 9.4E-16 111.8 8.7 170 159-357 161-360 (508)
97 KOG0108 mRNA cleavage and poly 99.2 3.7E-11 8E-16 117.6 8.6 81 160-266 19-99 (435)
98 cd00590 RRM RRM (RNA recogniti 99.2 1.7E-10 3.7E-15 84.4 10.0 74 161-261 1-74 (74)
99 KOG0130 RNA-binding protein RB 99.2 6.5E-11 1.4E-15 95.6 7.2 84 158-267 71-154 (170)
100 KOG4454 RNA binding protein (R 99.2 6.4E-12 1.4E-16 109.3 0.9 144 157-350 7-154 (267)
101 KOG0109 RNA-binding protein LA 99.1 8.2E-11 1.8E-15 106.5 6.3 75 281-363 4-78 (346)
102 KOG0111 Cyclophilin-type pepti 99.1 4.4E-11 9.6E-16 104.1 4.3 84 158-267 9-92 (298)
103 KOG0128 RNA-binding protein SA 99.1 5.8E-12 1.3E-16 128.0 -2.4 148 159-358 667-814 (881)
104 KOG0105 Alternative splicing f 99.0 3.7E-10 8E-15 96.0 6.7 78 279-359 6-83 (241)
105 KOG0415 Predicted peptidyl pro 99.0 3.3E-10 7.1E-15 105.0 6.5 87 275-361 235-321 (479)
106 KOG4206 Spliceosomal protein s 99.0 8.8E-10 1.9E-14 97.0 8.5 77 281-360 11-91 (221)
107 PF13893 RRM_5: RNA recognitio 99.0 2.2E-09 4.8E-14 75.5 7.4 56 176-262 1-56 (56)
108 smart00361 RRM_1 RNA recogniti 99.0 2.9E-09 6.3E-14 78.6 8.0 62 173-259 2-69 (70)
109 KOG0112 Large RNA-binding prot 98.9 1.1E-09 2.3E-14 112.2 5.2 163 156-361 369-533 (975)
110 KOG0226 RNA-binding proteins [ 98.9 1.2E-09 2.6E-14 97.3 4.7 172 157-357 94-268 (290)
111 KOG1456 Heterogeneous nuclear 98.9 2.9E-08 6.4E-13 92.8 13.7 167 155-359 27-199 (494)
112 KOG4208 Nucleolar RNA-binding 98.9 7.1E-09 1.5E-13 90.0 8.7 80 279-358 49-129 (214)
113 KOG0415 Predicted peptidyl pro 98.9 1E-09 2.2E-14 101.8 3.4 86 155-266 235-320 (479)
114 KOG0132 RNA polymerase II C-te 98.9 5.2E-09 1.1E-13 105.7 8.3 110 158-302 420-529 (894)
115 KOG1456 Heterogeneous nuclear 98.9 1.6E-07 3.4E-12 88.1 17.2 170 158-360 286-490 (494)
116 KOG4661 Hsp27-ERE-TATA-binding 98.8 9.8E-09 2.1E-13 100.4 9.1 87 153-265 399-485 (940)
117 KOG0132 RNA polymerase II C-te 98.8 7.2E-09 1.6E-13 104.7 8.0 80 278-363 420-499 (894)
118 KOG4208 Nucleolar RNA-binding 98.8 1.5E-08 3.3E-13 87.9 8.7 85 155-265 45-130 (214)
119 KOG4205 RNA-binding protein mu 98.8 3.1E-09 6.7E-14 100.0 4.7 82 278-360 5-86 (311)
120 KOG0146 RNA-binding protein ET 98.8 6.3E-09 1.4E-13 93.3 6.1 88 154-267 280-367 (371)
121 KOG0153 Predicted RNA-binding 98.7 4E-08 8.7E-13 91.3 8.3 73 280-358 229-302 (377)
122 PF04059 RRM_2: RNA recognitio 98.7 1.4E-07 3.1E-12 73.6 9.9 81 280-360 2-88 (97)
123 KOG1365 RNA-binding protein Fu 98.7 1.1E-07 2.5E-12 89.2 10.0 166 158-352 59-236 (508)
124 KOG4211 Splicing factor hnRNP- 98.7 5.2E-07 1.1E-11 87.5 14.0 167 158-354 102-353 (510)
125 KOG1457 RNA binding protein (c 98.6 1.6E-07 3.4E-12 82.5 8.8 83 280-362 35-121 (284)
126 KOG0533 RRM motif-containing p 98.6 2.8E-07 6E-12 83.7 8.6 80 280-360 84-163 (243)
127 KOG4209 Splicing factor RNPS1, 98.5 1.1E-07 2.5E-12 86.2 5.9 78 280-358 102-179 (231)
128 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.6E-07 5.6E-12 90.7 8.2 82 279-360 405-486 (940)
129 KOG0153 Predicted RNA-binding 98.5 4.1E-07 8.8E-12 84.7 8.8 78 156-265 225-303 (377)
130 KOG4209 Splicing factor RNPS1, 98.5 1.7E-07 3.8E-12 85.0 5.2 84 155-265 97-180 (231)
131 KOG0116 RasGAP SH3 binding pro 98.5 3.5E-07 7.6E-12 89.4 7.5 79 279-358 288-366 (419)
132 KOG0116 RasGAP SH3 binding pro 98.4 7.1E-07 1.5E-11 87.2 8.5 81 158-265 287-367 (419)
133 KOG1548 Transcription elongati 98.4 8.4E-07 1.8E-11 82.6 8.2 79 279-358 134-220 (382)
134 KOG0106 Alternative splicing f 98.4 3.4E-07 7.3E-12 81.4 4.5 71 281-359 3-73 (216)
135 KOG0533 RRM motif-containing p 98.4 1.8E-06 4E-11 78.4 8.9 82 159-267 83-164 (243)
136 KOG4660 Protein Mei2, essentia 98.3 6.3E-07 1.4E-11 88.2 5.8 71 277-352 73-143 (549)
137 PF11608 Limkain-b1: Limkain b 98.3 3.4E-06 7.4E-11 63.1 8.0 68 280-357 3-75 (90)
138 KOG4660 Protein Mei2, essentia 98.3 1.4E-06 3E-11 85.8 6.7 158 158-358 74-249 (549)
139 KOG4676 Splicing factor, argin 98.3 2.5E-07 5.3E-12 87.2 1.4 173 160-361 8-228 (479)
140 KOG2193 IGF-II mRNA-binding pr 98.3 9.5E-08 2.1E-12 90.7 -1.6 151 160-356 2-154 (584)
141 KOG0151 Predicted splicing reg 98.3 1.5E-06 3.2E-11 87.5 6.5 86 156-264 171-256 (877)
142 KOG0226 RNA-binding proteins [ 98.2 1.5E-06 3.3E-11 77.8 5.6 84 156-265 187-270 (290)
143 PF04059 RRM_2: RNA recognitio 98.2 1.3E-05 2.9E-10 62.6 9.5 79 160-264 2-86 (97)
144 KOG0151 Predicted splicing reg 98.2 3.8E-06 8.3E-11 84.6 7.8 84 276-359 171-257 (877)
145 KOG4454 RNA binding protein (R 98.2 8.2E-07 1.8E-11 77.8 2.0 75 280-356 10-84 (267)
146 KOG3152 TBP-binding protein, a 98.2 2.2E-06 4.7E-11 76.9 4.6 85 158-256 73-157 (278)
147 KOG4307 RNA binding protein RB 98.0 1.2E-05 2.7E-10 80.9 7.4 169 158-355 310-510 (944)
148 PF11608 Limkain-b1: Limkain b 98.0 4.6E-05 1E-09 57.1 7.7 69 160-264 3-76 (90)
149 KOG0128 RNA-binding protein SA 97.9 6.2E-07 1.4E-11 92.0 -4.7 163 158-348 570-735 (881)
150 PF08777 RRM_3: RNA binding mo 97.8 5.7E-05 1.2E-09 60.2 5.7 71 279-355 1-76 (105)
151 KOG1995 Conserved Zn-finger pr 97.6 5.3E-05 1.2E-09 71.3 4.4 83 279-361 66-156 (351)
152 KOG3152 TBP-binding protein, a 97.6 4.2E-05 9.1E-10 68.8 3.0 70 281-350 76-157 (278)
153 KOG2314 Translation initiation 97.6 0.00021 4.5E-09 70.8 7.6 77 281-358 60-143 (698)
154 KOG4307 RNA binding protein RB 97.5 0.0003 6.6E-09 71.2 8.1 75 280-355 868-943 (944)
155 KOG1995 Conserved Zn-finger pr 97.5 0.00014 3E-09 68.6 5.0 91 158-266 65-155 (351)
156 KOG0115 RNA-binding protein p5 97.4 0.00049 1.1E-08 62.1 7.1 99 240-354 7-109 (275)
157 KOG4210 Nuclear localization s 97.4 0.00013 2.7E-09 68.7 3.2 82 159-267 184-266 (285)
158 COG5175 MOT2 Transcriptional r 97.3 0.00053 1.1E-08 64.0 6.7 77 159-263 114-201 (480)
159 KOG4849 mRNA cleavage factor I 97.2 0.00039 8.6E-09 65.1 4.9 74 280-353 81-156 (498)
160 COG5175 MOT2 Transcriptional r 97.2 0.00082 1.8E-08 62.7 6.8 78 280-357 115-201 (480)
161 PF08777 RRM_3: RNA binding mo 97.2 0.0015 3.2E-08 52.1 7.0 59 160-250 2-60 (105)
162 PF08952 DUF1866: Domain of un 97.1 0.0025 5.5E-08 53.2 8.2 72 277-357 25-105 (146)
163 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0025 5.4E-08 44.1 5.5 52 280-338 2-53 (53)
164 KOG4849 mRNA cleavage factor I 96.9 0.00068 1.5E-08 63.5 2.9 78 160-261 81-158 (498)
165 KOG0129 Predicted RNA-binding 96.9 0.0038 8.2E-08 61.6 8.2 63 158-246 369-432 (520)
166 KOG1855 Predicted RNA-binding 96.9 0.0025 5.4E-08 61.4 6.6 66 278-343 230-308 (484)
167 KOG2314 Translation initiation 96.8 0.0043 9.4E-08 61.7 7.7 77 158-261 57-140 (698)
168 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0065 1.4E-07 47.8 7.2 78 280-359 7-92 (100)
169 KOG2416 Acinus (induces apopto 96.5 0.0022 4.7E-08 64.2 3.9 78 274-357 439-520 (718)
170 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0091 2E-07 41.3 5.6 52 160-244 2-53 (53)
171 KOG2202 U2 snRNP splicing fact 96.4 0.0016 3.5E-08 58.9 2.0 63 294-357 83-146 (260)
172 KOG1996 mRNA splicing factor [ 96.1 0.017 3.7E-07 53.2 6.9 65 293-357 300-365 (378)
173 KOG1855 Predicted RNA-binding 96.0 0.0078 1.7E-07 58.1 4.4 81 157-250 229-309 (484)
174 KOG0112 Large RNA-binding prot 96.0 0.013 2.8E-07 61.5 6.1 82 156-269 452-535 (975)
175 KOG2202 U2 snRNP splicing fact 96.0 0.0041 8.9E-08 56.3 2.2 63 174-263 83-146 (260)
176 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.023 5E-07 44.7 6.2 83 159-262 6-89 (100)
177 KOG2416 Acinus (induces apopto 95.8 0.041 9E-07 55.3 8.5 74 158-263 443-520 (718)
178 KOG4676 Splicing factor, argin 95.7 0.012 2.5E-07 56.3 4.3 77 281-358 9-88 (479)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.015 3.3E-07 50.8 4.6 79 279-357 7-96 (176)
180 PF08952 DUF1866: Domain of un 95.6 0.031 6.6E-07 46.8 5.9 73 157-264 25-106 (146)
181 KOG2193 IGF-II mRNA-binding pr 95.6 0.01 2.2E-07 57.2 3.3 76 281-362 3-79 (584)
182 PF07576 BRAP2: BRCA1-associat 95.4 0.21 4.6E-06 40.0 9.9 65 281-347 15-80 (110)
183 PF10309 DUF2414: Protein of u 95.0 0.13 2.8E-06 36.7 6.7 53 281-341 7-62 (62)
184 PF15023 DUF4523: Protein of u 94.4 0.22 4.8E-06 41.4 7.5 73 277-357 84-160 (166)
185 KOG1996 mRNA splicing factor [ 93.8 0.2 4.3E-06 46.4 6.8 64 174-262 301-364 (378)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 93.4 0.067 1.5E-06 46.7 3.0 74 158-252 6-80 (176)
187 KOG4285 Mitotic phosphoprotein 93.2 0.38 8.3E-06 44.8 7.7 74 158-265 196-270 (350)
188 KOG2253 U1 snRNP complex, subu 93.1 0.095 2.1E-06 53.5 3.9 72 275-355 36-107 (668)
189 PF03880 DbpA: DbpA RNA bindin 92.6 0.66 1.4E-05 34.2 7.0 59 289-356 11-74 (74)
190 PF04847 Calcipressin: Calcipr 92.2 0.29 6.2E-06 43.0 5.3 61 292-358 8-70 (184)
191 KOG2253 U1 snRNP complex, subu 92.0 0.013 2.9E-07 59.5 -3.6 147 157-339 38-194 (668)
192 KOG2068 MOT2 transcription fac 91.6 0.076 1.7E-06 50.1 1.1 79 281-359 79-163 (327)
193 PF08675 RNA_bind: RNA binding 91.4 0.78 1.7E-05 34.7 6.0 57 158-249 8-64 (87)
194 KOG2135 Proteins containing th 91.4 0.12 2.6E-06 50.8 2.1 72 281-359 374-446 (526)
195 KOG2318 Uncharacterized conser 91.3 3.3 7.2E-05 42.0 12.0 35 322-356 269-305 (650)
196 KOG4574 RNA-binding protein (c 91.1 0.14 3E-06 53.7 2.4 72 282-359 301-374 (1007)
197 PF11767 SET_assoc: Histone ly 91.0 0.98 2.1E-05 32.7 6.1 55 290-353 11-65 (66)
198 KOG0804 Cytoplasmic Zn-finger 90.9 0.74 1.6E-05 45.2 7.0 67 279-347 74-141 (493)
199 PF10446 DUF2457: Protein of u 90.4 0.37 8E-06 47.3 4.5 9 159-167 121-129 (458)
200 PF15023 DUF4523: Protein of u 90.4 1.9 4E-05 36.1 7.9 75 155-263 82-160 (166)
201 KOG4285 Mitotic phosphoprotein 90.1 0.65 1.4E-05 43.3 5.6 72 281-360 199-271 (350)
202 KOG2068 MOT2 transcription fac 90.1 0.15 3.3E-06 48.1 1.5 85 158-265 76-163 (327)
203 KOG0115 RNA-binding protein p5 90.0 0.4 8.6E-06 43.7 4.0 74 160-260 32-109 (275)
204 KOG2591 c-Mpl binding protein, 89.8 0.88 1.9E-05 45.8 6.6 97 237-354 147-247 (684)
205 KOG2135 Proteins containing th 88.7 0.25 5.3E-06 48.7 1.9 75 159-266 372-447 (526)
206 PF08675 RNA_bind: RNA binding 88.4 1.8 3.9E-05 32.7 5.9 54 281-343 11-64 (87)
207 PF07292 NID: Nmi/IFP 35 domai 87.9 1.9 4E-05 33.1 5.8 71 230-300 1-73 (88)
208 KOG2891 Surface glycoprotein [ 86.4 0.58 1.3E-05 43.1 2.8 79 280-358 150-267 (445)
209 PF04847 Calcipressin: Calcipr 84.9 2.4 5.3E-05 37.2 5.9 62 172-265 8-71 (184)
210 PF04147 Nop14: Nop14-like fam 84.8 1.4 3E-05 47.9 5.2 21 164-184 415-439 (840)
211 KOG0804 Cytoplasmic Zn-finger 84.7 5.7 0.00012 39.2 8.7 77 158-262 73-156 (493)
212 PF10309 DUF2414: Protein of u 84.4 6.2 0.00013 28.1 6.6 53 160-247 6-62 (62)
213 PF12220 U1snRNP70_N: U1 small 83.7 0.095 2.1E-06 40.8 -3.1 43 21-63 6-51 (94)
214 PF04931 DNA_pol_phi: DNA poly 82.0 0.87 1.9E-05 49.2 2.3 7 176-182 741-747 (784)
215 PF07576 BRAP2: BRCA1-associat 81.7 16 0.00034 29.3 8.8 36 217-254 46-81 (110)
216 PF11767 SET_assoc: Histone ly 81.1 7.6 0.00017 28.0 6.2 55 170-259 11-65 (66)
217 PF14111 DUF4283: Domain of un 77.8 2.1 4.5E-05 35.9 2.9 84 226-312 54-138 (153)
218 KOG2591 c-Mpl binding protein, 77.2 5.6 0.00012 40.3 5.9 74 153-259 168-246 (684)
219 KOG4483 Uncharacterized conser 76.4 2.8 6.2E-05 40.6 3.6 57 158-246 390-446 (528)
220 PF03880 DbpA: DbpA RNA bindin 75.6 15 0.00032 26.9 6.6 35 227-262 40-74 (74)
221 KOG4574 RNA-binding protein (c 73.9 2.7 5.8E-05 44.6 2.9 73 161-265 300-374 (1007)
222 PF10567 Nab6_mRNP_bdg: RNA-re 73.1 84 0.0018 29.6 13.8 165 158-342 14-212 (309)
223 PF04931 DNA_pol_phi: DNA poly 71.2 3.1 6.7E-05 45.0 2.8 16 170-185 728-743 (784)
224 smart00596 PRE_C2HC PRE_C2HC d 65.4 12 0.00025 27.3 3.8 61 294-357 2-63 (69)
225 KOG1999 RNA polymerase II tran 64.7 16 0.00035 39.6 6.3 36 223-259 206-241 (1024)
226 TIGR02542 B_forsyth_147 Bacter 57.9 30 0.00065 27.8 5.3 46 287-332 82-130 (145)
227 KOG4410 5-formyltetrahydrofola 56.8 19 0.00042 33.5 4.7 29 158-186 329-357 (396)
228 KOG4019 Calcineurin-mediated s 54.1 16 0.00034 31.8 3.5 76 280-361 11-92 (193)
229 PF07530 PRE_C2HC: Associated 53.1 28 0.0006 25.3 4.2 62 294-358 2-64 (68)
230 KOG4365 Uncharacterized conser 46.7 3.4 7.4E-05 40.6 -1.9 78 280-358 4-81 (572)
231 PF03468 XS: XS domain; Inter 46.6 33 0.00071 27.7 4.1 56 281-339 10-75 (116)
232 PTZ00415 transmission-blocking 46.1 16 0.00034 42.3 2.7 8 68-75 146-153 (2849)
233 KOG2891 Surface glycoprotein [ 45.5 6.3 0.00014 36.5 -0.3 34 159-192 149-194 (445)
234 KOG2295 C2H2 Zn-finger protein 44.3 3.9 8.4E-05 41.4 -2.0 71 279-349 231-301 (648)
235 KOG4483 Uncharacterized conser 44.2 69 0.0015 31.4 6.4 55 278-339 390-445 (528)
236 KOG4019 Calcineurin-mediated s 43.6 24 0.00052 30.8 2.9 41 225-265 49-90 (193)
237 KOG1999 RNA polymerase II tran 42.3 2.8E+02 0.0061 30.6 11.0 43 305-353 199-241 (1024)
238 KOG4410 5-formyltetrahydrofola 41.7 60 0.0013 30.4 5.3 58 280-342 331-395 (396)
239 KOG1295 Nonsense-mediated deca 36.0 33 0.00073 33.3 3.0 67 280-346 8-77 (376)
240 COG5193 LHP1 La protein, small 34.3 16 0.00034 35.7 0.5 60 280-339 175-244 (438)
241 PF10567 Nab6_mRNP_bdg: RNA-re 32.2 98 0.0021 29.2 5.2 77 281-357 17-106 (309)
242 PF15513 DUF4651: Domain of un 30.9 1.1E+02 0.0023 21.9 4.1 19 174-192 9-27 (62)
243 PF11823 DUF3343: Protein of u 30.9 67 0.0014 23.3 3.3 26 322-347 2-27 (73)
244 KOG2318 Uncharacterized conser 30.5 76 0.0016 32.7 4.5 39 276-314 171-214 (650)
245 PF03066 Nucleoplasmin: Nucleo 28.7 18 0.00039 30.6 -0.1 7 42-48 87-93 (149)
246 PF06524 NOA36: NOA36 protein; 27.8 43 0.00092 30.9 2.1 8 60-67 226-233 (314)
247 COG4547 CobT Cobalamin biosynt 27.4 68 0.0015 32.2 3.5 15 158-172 315-329 (620)
248 TIGR00927 2A1904 K+-dependent 26.0 35 0.00076 37.4 1.4 10 160-169 905-914 (1096)
249 TIGR01651 CobT cobaltochelatas 25.7 86 0.0019 32.6 4.0 14 159-172 295-308 (600)
250 COG4547 CobT Cobalamin biosynt 25.4 84 0.0018 31.6 3.7 9 251-259 425-433 (620)
251 KOG4008 rRNA processing protei 25.3 54 0.0012 29.9 2.2 30 281-310 42-71 (261)
252 PF02724 CDC45: CDC45-like pro 24.3 51 0.0011 34.7 2.3 6 39-44 83-88 (622)
253 PRK13259 regulatory protein Sp 24.2 1.4E+02 0.003 23.2 4.0 26 305-330 2-27 (94)
254 KOG2295 C2H2 Zn-finger protein 23.9 23 0.0005 36.1 -0.4 71 158-254 230-300 (648)
255 KOG4008 rRNA processing protei 23.6 70 0.0015 29.1 2.6 35 156-190 37-71 (261)
256 PF09707 Cas_Cas2CT1978: CRISP 23.0 1.8E+02 0.0039 22.1 4.4 44 281-328 27-71 (86)
257 PRK14548 50S ribosomal protein 22.6 3.1E+02 0.0067 20.8 5.6 51 287-340 28-80 (84)
258 PF02714 DUF221: Domain of unk 22.2 2E+02 0.0042 27.2 5.7 56 230-301 1-56 (325)
259 PF04026 SpoVG: SpoVG; InterP 21.4 1.7E+02 0.0037 22.1 4.0 26 305-330 2-27 (84)
260 TIGR01638 Atha_cystat_rel Arab 21.2 1.1E+02 0.0024 23.7 2.9 57 305-363 33-91 (92)
261 PF03439 Spt5-NGN: Early trans 21.1 1.6E+02 0.0034 22.1 3.8 35 305-344 33-67 (84)
262 PF11823 DUF3343: Protein of u 20.7 3.3E+02 0.0071 19.5 7.5 62 228-304 2-63 (73)
263 KOG1295 Nonsense-mediated deca 20.0 84 0.0018 30.6 2.6 71 159-252 7-77 (376)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.3e-32 Score=260.88 Aligned_cols=172 Identities=26% Similarity=0.514 Sum_probs=157.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+++|..||.|..|+ |+.+..+++++|||||+|.+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~--------------------------i~~d~~tg~srGyaFVeF~~ 158 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCR--------------------------IMRDYKTGYSFGYAFVDFGS 158 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEecCCCCccCcEEEEEEcc
Confidence 3578999999999999999999999999999887 78888899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE 316 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~ 316 (365)
.++|.+|+..|||..+.++.|+|.++.+.... ...++|||+|||+.+++++|+++|+.||.|+.|+|++++.
T Consensus 159 ~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~--------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~ 230 (346)
T TIGR01659 159 EADSQRAIKNLNGITVRNKRLKVSYARPGGES--------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL 230 (346)
T ss_pred HHHHHHHHHHcCCCccCCceeeeecccccccc--------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC
Confidence 99999999999999999999999988654322 1234899999999999999999999999999999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCCCccCC--eeEEEEEccccccC
Q 017842 317 TGRSRGFGFVTMSSETELNDAIAALDGQNLDG--RAIRVNVAEDRQRR 362 (365)
Q Consensus 317 ~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g--r~l~V~~a~~~~~~ 362 (365)
+++++|||||+|.+.++|.+||..||+..+.| ++|+|.+|+.+.+.
T Consensus 231 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 231 TGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 99999999999999999999999999998866 79999999876553
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=3.7e-31 Score=266.47 Aligned_cols=178 Identities=19% Similarity=0.384 Sum_probs=157.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||||||+++++++|+.+|..||.|..++ ++.++.+++++|||||+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~--------------------------I~~D~~TgkskGfAFVeF~s~ 159 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSIN--------------------------MSWDPATGKHKGFAFVEYEVP 159 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEE--------------------------EeecCCCCCcCCeEEEEeCcH
Confidence 357999999999999999999999999999987 778888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCC---CCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEee
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 314 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~---~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d 314 (365)
++|.+|+..|||..|+||.|+|.+......... .........++|||+|||+.+++++|+++|+.||.|..|+|.++
T Consensus 160 e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 160 EAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred HHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec
Confidence 999999999999999999999986543321110 00111223469999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 315 RETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 315 ~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
+.+++++|||||+|.+.++|.+|+..|||..|+|+.|+|.++..++.
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999987554
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=4.8e-30 Score=248.53 Aligned_cols=179 Identities=27% Similarity=0.474 Sum_probs=154.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...+|||+|||.++++++|+.+|..||.|..+. ++.+..++.++|||||+|.+.
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~--------------------------~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSR--------------------------ILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEE--------------------------EEecCCCCCcCcEEEEEECCH
Confidence 356899999999999999999999999998877 666777889999999999999
Q ss_pred HHHHHHHHHHccCcccC--eeEEEeecCCCCCCCC----------------C----------------------------
Q 017842 238 EEAEKAVEMFHRYDIDG--RLLTVNKAAPRGTQPE----------------R---------------------------- 271 (365)
Q Consensus 238 e~a~~Al~~lng~~~~g--r~l~V~~a~~~~~~~~----------------~---------------------------- 271 (365)
++|..|+..|||..+.| ++|.|.++..+..... .
T Consensus 142 ~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
T TIGR01661 142 DEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGD 221 (352)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcch
Confidence 99999999999999877 6788877654331000 0
Q ss_pred ----------------------------------------CCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEE
Q 017842 272 ----------------------------------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARV 311 (365)
Q Consensus 272 ----------------------------------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i 311 (365)
.+.....+.+|||+|||+.+++++|+++|+.||.|..|+|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i 301 (352)
T TIGR01661 222 FTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKI 301 (352)
T ss_pred hhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence 0000112336999999999999999999999999999999
Q ss_pred EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 312 VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 312 ~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
++|+.+|.++|||||+|.+.++|.+||..|||..|.||.|+|.|+.++.++
T Consensus 302 ~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 302 IRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAYR 352 (352)
T ss_pred eEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCCC
Confidence 999999999999999999999999999999999999999999999988753
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.9e-29 Score=244.35 Aligned_cols=168 Identities=30% Similarity=0.559 Sum_probs=154.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
..+|||+|||+++++++|+++|+.||+|..++ +++++.+|+++|||||+|.+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~--------------------------i~~d~~~g~s~g~afV~f~~~~ 56 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCK--------------------------LVRDKVTGQSLGYGFVNYVRPE 56 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEE--------------------------EEEcCCCCccceEEEEEECcHH
Confidence 57999999999999999999999999999988 8888889999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 318 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~ 318 (365)
+|.+|+..|||..+.|+.|+|.++.+.... ...++|||+|||..+++++|+.+|+.||.|..++++++..++
T Consensus 57 ~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~--------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~ 128 (352)
T TIGR01661 57 DAEKAVNSLNGLRLQNKTIKVSYARPSSDS--------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTG 128 (352)
T ss_pred HHHHHHhhcccEEECCeeEEEEeecccccc--------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCC
Confidence 999999999999999999999988754322 123489999999999999999999999999999999998889
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCCccCC--eeEEEEEccccc
Q 017842 319 RSRGFGFVTMSSETELNDAIAALDGQNLDG--RAIRVNVAEDRQ 360 (365)
Q Consensus 319 ~~kG~afV~F~s~~~a~~Al~~l~~~~l~g--r~l~V~~a~~~~ 360 (365)
.++|||||+|.+.++|..|+..|||..+.| ++|+|.|+..+.
T Consensus 129 ~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 129 LSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 999999999999999999999999999877 689999987554
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.4e-29 Score=223.05 Aligned_cols=197 Identities=29% Similarity=0.480 Sum_probs=170.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeecc-------C-------CCcccceee----------------
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLF-------G-------NQGFHMWVC---------------- 207 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~-------~-------~~~~~~~~~---------------- 207 (365)
..||||||||..++|++-|..||.+.|.|..++|.+.-+- + ++++|.++.
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~ 84 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA 84 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc
Confidence 4689999999999999999999999999999887655331 1 234443322
Q ss_pred eeeeeeeeeEEecCCCCCccceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCC--------CcCCCC
Q 017842 208 AVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAP--------RVFEPG 279 (365)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~--------~~~~~~ 279 (365)
.-+.++..+|++|..|++++|||||.|-++++|+.||..+||.-|++|.||-+|+..+.......+ +..+.+
T Consensus 85 pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~N 164 (321)
T KOG0148|consen 85 PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDN 164 (321)
T ss_pred cccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCC
Confidence 234578899999999999999999999999999999999999999999999999988764443322 234567
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
|+|||||++..++++.|++.|+.||.|..|||.++ +||+||.|.++++|..||-.+||..+.|..+++.|.+..
T Consensus 165 tsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 165 TSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred ceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 89999999999999999999999999999999988 899999999999999999999999999999999998754
Q ss_pred c
Q 017842 360 Q 360 (365)
Q Consensus 360 ~ 360 (365)
.
T Consensus 239 ~ 239 (321)
T KOG0148|consen 239 D 239 (321)
T ss_pred C
Confidence 3
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=1.3e-28 Score=246.65 Aligned_cols=176 Identities=30% Similarity=0.536 Sum_probs=155.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+++|+.||.|..|+ ++.+..+++++|||||+|.+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~--------------------------i~~d~~~~~skg~afVeF~~ 140 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQ--------------------------CIKDRNSRRSKGVAYVEFYD 140 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EeecCCCCCcceEEEEEECC
Confidence 3578999999999999999999999999998887 77888899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC----CCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEE
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER----APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVV 312 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~----~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~ 312 (365)
.++|.+|+. |+|..+.|+.|.|..+......... .....+..++|||+|||+.+++++|+++|+.||.|..|.|+
T Consensus 141 ~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~ 219 (457)
T TIGR01622 141 VESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLH 219 (457)
T ss_pred HHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 999999997 5999999999999876433221111 11112335799999999999999999999999999999999
Q ss_pred eeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 313 YDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 313 ~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
++..+|.++|||||+|.+.++|.+|+..|||..|.|++|+|.||...
T Consensus 220 ~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 220 RDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred EcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999999999999999999999999999998743
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=4.4e-27 Score=241.48 Aligned_cols=167 Identities=30% Similarity=0.452 Sum_probs=150.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
+|||||||.++|+++|+++|+.||.|..|+ ++++..+++++|||||+|.+.++|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~--------------------------v~~d~~t~~s~G~afV~F~~~~~A 55 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVR--------------------------VCRDSVTRRSLGYGYVNFQNPADA 55 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEecCCCCCcceEEEEEECCHHHH
Confidence 799999999999999999999999998887 888888999999999999999999
Q ss_pred HHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCc
Q 017842 241 EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRS 320 (365)
Q Consensus 241 ~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~ 320 (365)
.+|+..+|+..|.|+.|+|.++...... ......+|||+|||..+++++|+++|+.||.|..|+|.++. +|++
T Consensus 56 ~~Al~~ln~~~i~gk~i~i~~s~~~~~~------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~s 128 (562)
T TIGR01628 56 ERALETMNFKRLGGKPIRIMWSQRDPSL------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKS 128 (562)
T ss_pred HHHHHHhCCCEECCeeEEeecccccccc------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCc
Confidence 9999999999999999999987532211 11123479999999999999999999999999999999884 6889
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 321 RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 321 kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
+|||||+|.+.++|.+|+..|||..+.|+.|.|.....+.
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccc
Confidence 9999999999999999999999999999999998766544
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.7e-27 Score=227.18 Aligned_cols=176 Identities=31% Similarity=0.585 Sum_probs=157.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
..||||++||+.++.++|.++|+.+|+|..+. ++++..++..+|||||.|+-.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~--------------------------vVt~~gs~~~RGfgfVtFam~E 58 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAV--------------------------VVTNKGSSEKRGFGFVTFAMEE 58 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeE--------------------------EecCCCcccccCccceeeehHh
Confidence 36999999999999999999999999999887 8889999999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCCCCC----------------CC--CcCCCCceEEEeCCCCcCcHHHHHHHH
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER----------------AP--RVFEPGFRIYVGNLPWEVDNARLEQVF 300 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~----------------~~--~~~~~~~~lfV~nLp~~~tee~L~~~F 300 (365)
++++|+..+++..|+||.|+|+.+.++...... .. ....+..+|.|+||||.+.+.+|+.+|
T Consensus 59 D~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vF 138 (678)
T KOG0127|consen 59 DVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVF 138 (678)
T ss_pred HHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHH
Confidence 999999999999999999999988876543210 00 112336699999999999999999999
Q ss_pred hccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 301 SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 301 ~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
+.||.|..|.|++...++.+ |||||+|.+..+|..||..+|+..|+||+|-|.||-++..
T Consensus 139 s~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 139 SNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred hhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999999999988776666 9999999999999999999999999999999999987754
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.3e-26 Score=235.33 Aligned_cols=183 Identities=21% Similarity=0.352 Sum_probs=143.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||||||+++|+++|+.+|..++........ ..+..+.....+..+|||||+|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~kg~afVeF~ 231 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKA--------------------EDGKHVSSVNINKEKNFAFLEFR 231 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCC--------------------CCCCceEEEEECCCCCEEEEEeC
Confidence 3457899999999999999999999886321110000 00001122224467899999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCC---------------------CCCCcCCCCceEEEeCCCCcCcHH
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---------------------RAPRVFEPGFRIYVGNLPWEVDNA 294 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~---------------------~~~~~~~~~~~lfV~nLp~~~tee 294 (365)
+.++|..||. |+|..|.|+.|+|.........+. ..........+|||+|||+.++++
T Consensus 232 ~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~ 310 (509)
T TIGR01642 232 TVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGED 310 (509)
T ss_pred CHHHHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 9999999995 799999999999975543321100 000122345799999999999999
Q ss_pred HHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 295 RLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 295 ~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
+|+++|+.||.|..+.|+++..+|.++|||||+|.+..+|..|+..|||..|+|++|.|.+|...
T Consensus 311 ~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 311 QIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred HHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999999999999999999999999999999999999999999999999999999999998644
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5.6e-27 Score=220.55 Aligned_cols=178 Identities=30% Similarity=0.498 Sum_probs=151.6
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceE
Q 017842 151 EEFVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFG 230 (365)
Q Consensus 151 ~~~~~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a 230 (365)
.+...++..+.||||.||.++.+++|.-+|++.|+|-.++ +..++.+|.++|||
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR--------------------------LMmD~~sG~nRGYA 128 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR--------------------------LMMDPFSGDNRGYA 128 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEE--------------------------EeecccCCCCcceE
Confidence 4555567788999999999999999999999999999988 77788899999999
Q ss_pred EEEeCCHHHHHHHHHHHccCcc-cCeeEEEeecCCCCC-----------------------------------CCCCCCC
Q 017842 231 FVTMSTVEEAEKAVEMFHRYDI-DGRLLTVNKAAPRGT-----------------------------------QPERAPR 274 (365)
Q Consensus 231 fV~f~~~e~a~~Al~~lng~~~-~gr~l~V~~a~~~~~-----------------------------------~~~~~~~ 274 (365)
||.|.+++.|+.|++.||+++| .|++|.|+.+..... .....++
T Consensus 129 FVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNR 208 (506)
T KOG0117|consen 129 FVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNR 208 (506)
T ss_pred EEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcccccccc
Confidence 9999999999999999999988 799999875532210 0000000
Q ss_pred ----------------------------------------------cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEE
Q 017842 275 ----------------------------------------------VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN 308 (365)
Q Consensus 275 ----------------------------------------------~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~ 308 (365)
....-..|||+||+..+|++.|+++|+.||.|+.
T Consensus 209 GFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veR 288 (506)
T KOG0117|consen 209 GFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVER 288 (506)
T ss_pred ceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEE
Confidence 0011248999999999999999999999999999
Q ss_pred EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 309 ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 309 v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
|..++| ||||.|.++++|.+||+.+||+.|.|..|.|.+|++..+.
T Consensus 289 Vkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 289 VKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 999876 9999999999999999999999999999999999987654
No 11
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=5.7e-27 Score=197.07 Aligned_cols=172 Identities=34% Similarity=0.566 Sum_probs=155.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.+.|||||||+..++++-|.++|-+.|+|..++ +..++.+...+||||++|.++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~--------------------------iPkDrv~~~~qGygF~Ef~~e 61 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLH--------------------------IPKDRVTQKHQGYGFAEFRTE 61 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeee--------------------------cchhhhcccccceeEEEEech
Confidence 467999999999999999999999999998887 778888889999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEE-EEEeeCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA-RVVYDRE 316 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v-~i~~d~~ 316 (365)
++|.-|++.||...+.||+|+|+.+.... .....+..|||+||.+.+++..|+..|+.||.+... .|.++..
T Consensus 62 edadYAikiln~VkLYgrpIrv~kas~~~-------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~ 134 (203)
T KOG0131|consen 62 EDADYAIKILNMVKLYGRPIRVNKASAHQ-------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD 134 (203)
T ss_pred hhhHHHHHHHHHHHhcCceeEEEeccccc-------ccccccccccccccCcchhHHHHHHHHHhccccccCCccccccc
Confidence 99999999999999999999999887221 122233589999999999999999999999987764 7899999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 317 TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 317 ~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
||.++|||||.|.+.+.+.+|+..|||+.++.|+|+|.|+..+..+
T Consensus 135 tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 135 TGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred CCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999876543
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=2.6e-26 Score=235.78 Aligned_cols=175 Identities=37% Similarity=0.599 Sum_probs=154.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||.++++++|+++|..||.|..+. +..+ .+++++|||||.|.+.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~--------------------------i~~~-~~g~~~G~afV~F~~~ 229 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAA--------------------------VMKD-GSGRSRGFAFVNFEKH 229 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEE--------------------------EEEC-CCCCcccEEEEEECCH
Confidence 457899999999999999999999999998876 4444 4688999999999999
Q ss_pred HHHHHHHHHHccCccc----CeeEEEeecCCCCCCCCC----------CCCcCCCCceEEEeCCCCcCcHHHHHHHHhcc
Q 017842 238 EEAEKAVEMFHRYDID----GRLLTVNKAAPRGTQPER----------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEH 303 (365)
Q Consensus 238 e~a~~Al~~lng~~~~----gr~l~V~~a~~~~~~~~~----------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~ 303 (365)
++|.+|+..|+|..+. |+.|.|.++..+..+... .......+++|||+||++.+++++|+++|+.|
T Consensus 230 e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~ 309 (562)
T TIGR01628 230 EDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC 309 (562)
T ss_pred HHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc
Confidence 9999999999999999 999999988766543100 01113345689999999999999999999999
Q ss_pred CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 304 GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 304 G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
|.|..|+|.++ .+|+++|||||.|.+.++|.+|+..|||..++|++|.|.+|..+.
T Consensus 310 G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 310 GEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred CCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999999 679999999999999999999999999999999999999998764
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=1.7e-25 Score=225.25 Aligned_cols=168 Identities=31% Similarity=0.538 Sum_probs=126.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|++||.|..++|. .+ .+++++|||||+|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~--------------------------~D-~sG~sRGfaFV~F~ 107 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLM--------------------------MD-FSGQNRGYAFVTFC 107 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEE--------------------------EC-CCCCccceEEEEeC
Confidence 3346899999999999999999999999999998843 33 34445555555555
Q ss_pred CHHHHHHHHHHHccCcc---------------------------------------------------------------
Q 017842 236 TVEEAEKAVEMFHRYDI--------------------------------------------------------------- 252 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~--------------------------------------------------------------- 252 (365)
+.++|.+||..||+..|
T Consensus 108 ~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFV 187 (578)
T TIGR01648 108 GKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFV 187 (578)
T ss_pred CHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEE
Confidence 55555555555444444
Q ss_pred ----------------------cCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhcc--CCeEE
Q 017842 253 ----------------------DGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEH--GKVVN 308 (365)
Q Consensus 253 ----------------------~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~--G~V~~ 308 (365)
.|+.|.|+++.+..... ........+|||+|||+.+++++|+++|+.| |.|+.
T Consensus 188 eF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d---~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r 264 (578)
T TIGR01648 188 EYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD---EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER 264 (578)
T ss_pred EcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc---ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 44444444443322111 1111234589999999999999999999999 99999
Q ss_pred EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 309 ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 309 v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
|+++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.||+++.+
T Consensus 265 V~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 265 VKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred EEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9876 56999999999999999999999999999999999987644
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.6e-25 Score=224.68 Aligned_cols=175 Identities=17% Similarity=0.274 Sum_probs=147.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||||||+.+++++|+++|..||.|..+. ++.+..+|.++|||||+|.+.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~--------------------------~~~~~~~g~~~g~afv~f~~~ 347 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN--------------------------LIKDIATGLSKGYAFCEYKDP 347 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EEecCCCCCcCeEEEEEECCH
Confidence 467999999999999999999999999998877 777888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCC--------------------CCcCCCCceEEEeCCCCcC------
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA--------------------PRVFEPGFRIYVGNLPWEV------ 291 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~--------------------~~~~~~~~~lfV~nLp~~~------ 291 (365)
++|..|+..|||..|.|+.|.|.++.......... .....+..+|+|.||....
T Consensus 348 ~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~ 427 (509)
T TIGR01642 348 SVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDE 427 (509)
T ss_pred HHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcc
Confidence 99999999999999999999999885433211000 0012345689999996431
Q ss_pred ----cHHHHHHHHhccCCeEEEEEEeeC---CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 292 ----DNARLEQVFSEHGKVVNARVVYDR---ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 292 ----tee~L~~~F~~~G~V~~v~i~~d~---~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
..++|+++|..||.|..|.|+++. .++.++|+|||+|.+.++|.+|+..|||..|.||.|.|.|...
T Consensus 428 ~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 428 EYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred hHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 246899999999999999998753 3456789999999999999999999999999999999999763
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=4.2e-25 Score=222.32 Aligned_cols=166 Identities=20% Similarity=0.218 Sum_probs=138.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+.++|||+|||+++++++|+++|+.||.|..+. ++ +++|||||+|.+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~--------------------------i~------~~k~~afVef~~~ 48 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVM--------------------------ML------PGKRQALVEFEDE 48 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EE------CCCCEEEEEeCch
Confidence 368999999999999999999999999999887 33 2468999999999
Q ss_pred HHHHHHHHHH--ccCcccCeeEEEeecCCCCCCCCCC----CCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEE
Q 017842 238 EEAEKAVEMF--HRYDIDGRLLTVNKAAPRGTQPERA----PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARV 311 (365)
Q Consensus 238 e~a~~Al~~l--ng~~~~gr~l~V~~a~~~~~~~~~~----~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i 311 (365)
++|.+|+..+ ++..+.|+.|+|.++..+....... ........+|||+||++.+|+++|+++|+.||.|..|.|
T Consensus 49 e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i 128 (481)
T TIGR01649 49 ESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVT 128 (481)
T ss_pred HHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEE
Confidence 9999999864 7889999999999987653221110 011112347999999999999999999999999999999
Q ss_pred EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--eeEEEEEcccc
Q 017842 312 VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG--RAIRVNVAEDR 359 (365)
Q Consensus 312 ~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g--r~l~V~~a~~~ 359 (365)
.++. .+|+|||+|.+.++|.+|+..|||..|.| +.|+|.|++..
T Consensus 129 ~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 129 FTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 8763 25799999999999999999999999964 58999998853
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=9e-26 Score=199.20 Aligned_cols=169 Identities=30% Similarity=0.566 Sum_probs=156.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.+.|.|.-||.++|+++|+.+|...|+|++|+ +++|+-+|++-|||||-|.+++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScK--------------------------LvRDKitGqSLGYGFVNYv~p~ 94 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCK--------------------------LVRDKITGQSLGYGFVNYVRPK 94 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeee--------------------------eeeccccccccccceeeecChH
Confidence 45799999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 318 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~ 318 (365)
+|++|+..|||..+..+.|+|.++.|....-+. ..|||.+||..+|..+|..+|+.||.|..-||+.|..+|
T Consensus 95 DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~--------aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg 166 (360)
T KOG0145|consen 95 DAEKAINTLNGLRLQNKTIKVSYARPSSDSIKD--------ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTG 166 (360)
T ss_pred HHHHHHhhhcceeeccceEEEEeccCChhhhcc--------cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 999999999999999999999999877554333 279999999999999999999999999999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCCccCCe--eEEEEEcccccc
Q 017842 319 RSRGFGFVTMSSETELNDAIAALDGQNLDGR--AIRVNVAEDRQR 361 (365)
Q Consensus 319 ~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr--~l~V~~a~~~~~ 361 (365)
.+||.|||+|..+.+|..||+.|||.+--|. +|.|.||.....
T Consensus 167 ~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 167 LSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred eecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 9999999999999999999999999987664 999999987654
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.9e-26 Score=211.59 Aligned_cols=169 Identities=28% Similarity=0.475 Sum_probs=148.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+.-++|||-||..+++++|+.+|++||.|..|. +++|+.++.++|||||.|.+.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ein--------------------------l~kDk~t~~s~gcCFv~~~tr 86 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEIN--------------------------LIKDKSTGQSKGCCFVKYYTR 86 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEE--------------------------eecccccCcccceEEEEeccH
Confidence 355899999999999999999999999999987 899999999999999999999
Q ss_pred HHHHHHHHHHccCc-cc--CeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEee
Q 017842 238 EEAEKAVEMFHRYD-ID--GRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 314 (365)
Q Consensus 238 e~a~~Al~~lng~~-~~--gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d 314 (365)
++|.+|+..|++.. |. .++|.|.++.....+. ....+||||-|+..+++.+++++|++||.|+.|+|.||
T Consensus 87 k~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~-------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd 159 (510)
T KOG0144|consen 87 KEADEAINALHNQKTLPGMHHPVQVKYADGERERI-------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD 159 (510)
T ss_pred HHHHHHHHHhhcccccCCCCcceeecccchhhhcc-------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec
Confidence 99999999998744 44 4677787776543332 12238999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCC-ccCC--eeEEEEEccccc
Q 017842 315 RETGRSRGFGFVTMSSETELNDAIAALDGQ-NLDG--RAIRVNVAEDRQ 360 (365)
Q Consensus 315 ~~~~~~kG~afV~F~s~~~a~~Al~~l~~~-~l~g--r~l~V~~a~~~~ 360 (365)
. .+.+||+|||+|.+++.|..||+.|||. .+.| .+|.|.||+.+.
T Consensus 160 ~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 160 P-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred c-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 5 5899999999999999999999999997 6666 599999999655
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=1.6e-24 Score=218.08 Aligned_cols=170 Identities=22% Similarity=0.354 Sum_probs=142.1
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
++..+|||+|||+ .+++++|+++|+.||.|..++ ++.+ .+|||||+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk--------------------------i~~~-----~~g~afV~f~ 321 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK--------------------------FMKN-----KKETALIEMA 321 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEeC-----CCCEEEEEEC
Confidence 3568999999998 699999999999999999887 4433 3699999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC-----------------------C------CCcCCCCceEEEeC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER-----------------------A------PRVFEPGFRIYVGN 286 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~-----------------------~------~~~~~~~~~lfV~n 286 (365)
+.++|..|+..|||..|.|+.|+|.++........+ . .....++.+|||+|
T Consensus 322 ~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~N 401 (481)
T TIGR01649 322 DPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSN 401 (481)
T ss_pred CHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEec
Confidence 999999999999999999999999887543211000 0 00124567999999
Q ss_pred CCCcCcHHHHHHHHhccCC--eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCee------EEEEEccc
Q 017842 287 LPWEVDNARLEQVFSEHGK--VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA------IRVNVAED 358 (365)
Q Consensus 287 Lp~~~tee~L~~~F~~~G~--V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~------l~V~~a~~ 358 (365)
||+.+++++|+++|+.||. |..|++.... ++ .+|+|||+|.+.++|.+||..|||..|.|+. |+|+|+++
T Consensus 402 Lp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 402 IPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 9999999999999999998 8888886543 23 5899999999999999999999999999985 99999986
Q ss_pred c
Q 017842 359 R 359 (365)
Q Consensus 359 ~ 359 (365)
+
T Consensus 480 ~ 480 (481)
T TIGR01649 480 R 480 (481)
T ss_pred C
Confidence 5
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.4e-24 Score=190.21 Aligned_cols=178 Identities=31% Similarity=0.489 Sum_probs=153.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
..+..|||.+||..+|.++|..+|++||.|-.-+ |+.+..+|.++|-|||.|..
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSR--------------------------iL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSR--------------------------ILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhh--------------------------hhhhcccceecceeEEEecc
Confidence 3466899999999999999999999999885544 88888899999999999999
Q ss_pred HHHHHHHHHHHccCcccC--eeEEEeecCCCCCCCCC----------------------------------------C--
Q 017842 237 VEEAEKAVEMFHRYDIDG--RLLTVNKAAPRGTQPER----------------------------------------A-- 272 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~g--r~l~V~~a~~~~~~~~~----------------------------------------~-- 272 (365)
.+.|..||+.|||..--| .+|.|..+..+...... .
T Consensus 179 r~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~ 258 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPM 258 (360)
T ss_pred hhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCc
Confidence 999999999999988765 68899877655321100 0
Q ss_pred -------------CCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHH
Q 017842 273 -------------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339 (365)
Q Consensus 273 -------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~ 339 (365)
+.....+.+|||.||..+.++.-||++|..||.|..|+|+||..++++||||||.+.+-++|..||.
T Consensus 259 ~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~ 338 (360)
T KOG0145|consen 259 TIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 338 (360)
T ss_pred cccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHH
Confidence 0011224699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCCeeEEEEEccccc
Q 017842 340 ALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 340 ~l~~~~l~gr~l~V~~a~~~~ 360 (365)
.|||..+++|.|.|+|-.+++
T Consensus 339 sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 339 SLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred HhcCccccceEEEEEEecCCC
Confidence 999999999999999976654
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.5e-24 Score=205.85 Aligned_cols=175 Identities=31% Similarity=0.534 Sum_probs=148.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
...|.|+||||.+...+|+.+|+.||.|..|. |.+....+ ..|||||.|....
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~--------------------------IP~k~dgk-lcGFaFV~fk~~~ 169 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIV--------------------------IPRKKDGK-LCGFAFVQFKEKK 169 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEE--------------------------cccCCCCC-ccceEEEEEeeHH
Confidence 56899999999999999999999999998887 44444444 4499999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCCCCC-------------------------------------------C---
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER-------------------------------------------A--- 272 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~-------------------------------------------~--- 272 (365)
+|.+|++.+||..|.||+|.|+|+.++...... .
T Consensus 170 dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~s 249 (678)
T KOG0127|consen 170 DAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNS 249 (678)
T ss_pred HHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccc
Confidence 999999999999999999999999776422100 0
Q ss_pred ------------------------------------CCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCC
Q 017842 273 ------------------------------------PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE 316 (365)
Q Consensus 273 ------------------------------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~ 316 (365)
......+.+|||+||||++|++.|.++|+.||.|.++.|+.++.
T Consensus 250 e~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~ 329 (678)
T KOG0127|consen 250 EAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKD 329 (678)
T ss_pred hhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccC
Confidence 00001135999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHh-----CC-CccCCeeEEEEEccccc
Q 017842 317 TGRSRGFGFVTMSSETELNDAIAAL-----DG-QNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 317 ~~~~kG~afV~F~s~~~a~~Al~~l-----~~-~~l~gr~l~V~~a~~~~ 360 (365)
|++++|.|||.|.+...|..||.+. .| ..|.||.|.|..|-.|.
T Consensus 330 T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 330 TGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred CCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 9999999999999999999999966 23 57899999999987653
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=7.5e-24 Score=209.55 Aligned_cols=175 Identities=30% Similarity=0.465 Sum_probs=148.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecC-CCCCccceEEEEeCCHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR-ETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~afV~f~~~e~ 239 (365)
+|||.||+++++.+.|..+|...|.|..+.|.. ..++ ..-.+.|||||+|.++++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~k------------------------kkd~~~k~lSmGfgFVEF~~~e~ 572 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISK------------------------KKDPANKYLSMGFGFVEFAKPES 572 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEec------------------------cccccccccccceeEEEecCHHH
Confidence 399999999999999999999999999987542 1111 133577999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCCCCCC-CCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCC
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE-RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 318 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~-~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~ 318 (365)
|+.|+..|+|+.++||.|.|..+..+..... +.......++.|.|+||||..+..+++.+|..||.|..|||+.....+
T Consensus 573 A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~ 652 (725)
T KOG0110|consen 573 AQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKG 652 (725)
T ss_pred HHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcch
Confidence 9999999999999999999998873322221 111222336799999999999999999999999999999999875567
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 319 RSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 319 ~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
.++|||||.|.+.++|..|+.+|.++.|.||+|.+.||++-
T Consensus 653 a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 653 AHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred hhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 78999999999999999999999999999999999999853
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=2e-22 Score=201.96 Aligned_cols=171 Identities=26% Similarity=0.363 Sum_probs=142.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||+|||+++++++|+.+|+.||.|..+. +..+..+|.++|||||+|.+.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~--------------------------~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQ--------------------------LHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEEcCCCCccceEEEEEECCHH
Confidence 68999999999999999999999999998887 7778888899999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCCC----------------------------------C--------------
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP----------------------------------E-------------- 270 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~----------------------------------~-------------- 270 (365)
+|.+|+..|||..|.|+.|.|.++....... .
T Consensus 240 ~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
T TIGR01622 240 EAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKI 319 (457)
T ss_pred HHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchh
Confidence 9999999999999999999999853210000 0
Q ss_pred --------------------------------CC--CCcCCCCceEEEeCCCCcCc----------HHHHHHHHhccCCe
Q 017842 271 --------------------------------RA--PRVFEPGFRIYVGNLPWEVD----------NARLEQVFSEHGKV 306 (365)
Q Consensus 271 --------------------------------~~--~~~~~~~~~lfV~nLp~~~t----------ee~L~~~F~~~G~V 306 (365)
.. .....+..+|+|.||....+ .++|++.|++||.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v 399 (457)
T TIGR01622 320 ALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGV 399 (457)
T ss_pred hhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCe
Confidence 00 00113456899999954433 37899999999999
Q ss_pred EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 307 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 307 ~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
+.|.|.. +.+.|++||+|.+.++|..|++.|||..|+||.|.|.|....
T Consensus 400 ~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 400 VHIYVDT----KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred eEEEEeC----CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999863 345899999999999999999999999999999999997643
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=3.6e-23 Score=185.51 Aligned_cols=151 Identities=28% Similarity=0.569 Sum_probs=139.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
+|||||||-.+++.+|+.+|++||+|..+. |+ +.||||...++.++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECD--------------------------Iv--------KNYgFVHiEdktaa 49 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECD--------------------------IV--------KNYGFVHIEDKTAA 49 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeee--------------------------ee--------cccceEEeeccccc
Confidence 699999999999999999999999999887 33 56999999999999
Q ss_pred HHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCc
Q 017842 241 EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRS 320 (365)
Q Consensus 241 ~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~ 320 (365)
..||..|+|..|+|..|.|..++.+. ...++|+|+||.+.++..+|+..|++||.|..|.|+
T Consensus 50 edairNLhgYtLhg~nInVeaSksKs----------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------- 111 (346)
T KOG0109|consen 50 EDAIRNLHGYTLHGVNINVEASKSKS----------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------- 111 (346)
T ss_pred HHHHhhcccceecceEEEEEeccccC----------CCccccccCCCCccccCHHHhhhhcccCCceeeeee--------
Confidence 99999999999999999999887662 223489999999999999999999999999999999
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccCC
Q 017842 321 RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363 (365)
Q Consensus 321 kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~~ 363 (365)
++|+||.|.-.++|..|++.|+|..+.|++++|+++.+|-+..
T Consensus 112 kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 112 KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred cceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 4599999999999999999999999999999999999887653
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=9.8e-23 Score=187.51 Aligned_cols=175 Identities=19% Similarity=0.392 Sum_probs=151.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
-++||||.+.+...++.|+..|..||+|.++. .-.+..|++.+|||||+|.-++
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSIn--------------------------MSWDp~T~kHKgFAFVEYEvPE 166 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSIN--------------------------MSWDPATGKHKGFAFVEYEVPE 166 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceee--------------------------cccccccccccceEEEEEeCcH
Confidence 45799999999999999999999999999988 4456679999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCC---CcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAP---RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR 315 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~---~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~ 315 (365)
.|.-|++.+||..++||.|+|.+...-...+.... .....-++|||..+..++.+++|+.+|+.||.|.+|.+.+++
T Consensus 167 aAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~p 246 (544)
T KOG0124|consen 167 AAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 246 (544)
T ss_pred HHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccC
Confidence 99999999999999999999986543322111000 011223599999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 316 ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 316 ~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
.++.+||||||+|.+.++...|+..||-..|+|..|||-.|--.
T Consensus 247 t~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 247 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred CCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 99999999999999999999999999999999999999877643
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7e-21 Score=183.78 Aligned_cols=153 Identities=29% Similarity=0.478 Sum_probs=141.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
.|||| +++|+..|.++|+.+|++.+++ ++++. + +-|||||.|.++.+|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~r--------------------------vc~d~-t--slgy~yvnf~~~~da 50 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIR--------------------------VCRDA-T--SLGYAYVNFQQPADA 50 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEE--------------------------EeecC-C--ccceEEEecCCHHHH
Confidence 68999 9999999999999999999988 88888 6 999999999999999
Q ss_pred HHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCc
Q 017842 241 EKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRS 320 (365)
Q Consensus 241 ~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~ 320 (365)
.+|+..+|...+.|++|++.|+..... .|||.||+..++...|..+|+.||+|.+|++..+... +
T Consensus 51 ~~A~~~~n~~~~~~~~~rim~s~rd~~-------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~ 115 (369)
T KOG0123|consen 51 ERALDTMNFDVLKGKPIRIMWSQRDPS-------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--S 115 (369)
T ss_pred HHHHHHcCCcccCCcEEEeehhccCCc-------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--c
Confidence 999999999999999999998764332 3999999999999999999999999999999999653 8
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 321 RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 321 kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
+|| ||+|.+...|.+|+..|||..+.|++|.|.....+.-
T Consensus 116 kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 116 KGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999 9999999999999999999999999999988776543
No 26
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=6.6e-21 Score=178.19 Aligned_cols=174 Identities=32% Similarity=0.558 Sum_probs=156.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...+||||+|+|+++++.|+..|.+||.|..+. +.+++.+++++||+||+|.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~--------------------------vm~d~~t~rsrgFgfv~f~~~ 58 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV--------------------------VMRDPSTGRSRGFGFVTFATP 58 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE--------------------------EeccCCCCCcccccceecCCC
Confidence 567999999999999999999999999999887 888899999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET 317 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~ 317 (365)
+.+..++.. .-..|.|+.|.+..+.++......... .....|||++||..+++++|+.+|..||.|..+.+..|..+
T Consensus 59 ~~v~~vl~~-~~h~~dgr~ve~k~av~r~~~~~~~~~--~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 59 EGVDAVLNA-RTHKLDGRSVEPKRAVSREDQTKVGRH--LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT 135 (311)
T ss_pred cchheeecc-cccccCCccccceeccCcccccccccc--cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc
Confidence 999888876 677899999999999888765433211 13458999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 318 GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 318 ~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
.+++||+||.|.+.+++.+++. ..-+.|+|+.+.|..|.++.-
T Consensus 136 ~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 136 SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred cccccceeeEeccccccceecc-cceeeecCceeeEeeccchhh
Confidence 9999999999999999999998 688999999999999988753
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=5.8e-21 Score=184.66 Aligned_cols=180 Identities=27% Similarity=0.475 Sum_probs=153.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
+....+|||+--|+...+..+|..||+.+|+|..|+ ++.+..+++++|-|||+|
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVr--------------------------iI~Dr~s~rskgi~Yvef 228 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVR--------------------------IIGDRNSRRSKGIAYVEF 228 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeE--------------------------eeccccchhhcceeEEEE
Confidence 344578999999999999999999999999999988 899999999999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC-CC----C-CCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEE
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP-ER----A-PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN 308 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~-~~----~-~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~ 308 (365)
.+.+.+-.||. |.|..+.|.+|.|.......... .. . .....|..+||||||.+++++++|+.+|+.||.|..
T Consensus 229 ~D~~sVp~aia-LsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~ 307 (549)
T KOG0147|consen 229 CDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIEN 307 (549)
T ss_pred ecccchhhHhh-hcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccccee
Confidence 99999998986 59999999999996542211110 00 0 111223334999999999999999999999999999
Q ss_pred EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 309 ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 309 v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
|.+.+|..+|.++|||||+|.+..+|.+|+.+|||..|.||.|+|.....+..
T Consensus 308 v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 308 VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred eeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999999999999999999999999999999987766543
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=7.4e-19 Score=169.77 Aligned_cols=168 Identities=24% Similarity=0.435 Sum_probs=148.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHH
Q 017842 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAE 241 (365)
Q Consensus 162 vfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~ 241 (365)
|||.||+.+++...|+++|+.||.|.+|+ +.++. .| ++|| ||.|.++++|+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~k--------------------------v~~~~-~g-~kg~-FV~f~~e~~a~ 129 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCK--------------------------VATDE-NG-SKGY-FVQFESEESAK 129 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEE--------------------------EEEcC-CC-ceee-EEEeCCHHHHH
Confidence 99999999999999999999999999998 44443 33 8999 99999999999
Q ss_pred HHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcc
Q 017842 242 KAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSR 321 (365)
Q Consensus 242 ~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~k 321 (365)
+|+.++||..+.|+.|.|.....+..+..........-+.++|.|++...++..|..+|..+|.|..+.++.+.. ++++
T Consensus 130 ~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~ 208 (369)
T KOG0123|consen 130 KAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSK 208 (369)
T ss_pred HHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCC
Confidence 999999999999999999988777665443332333345799999999999999999999999999999998854 6699
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 322 GFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 322 G~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
|||||.|.+.++|..|+..|++..+.|..+.|..+..+
T Consensus 209 ~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 209 GFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred CccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 99999999999999999999999999999999887763
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=7.8e-18 Score=170.33 Aligned_cols=81 Identities=17% Similarity=0.433 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|+.||.|..++ +.++..+++++|||||+|.+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svr--------------------------l~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQ--------------------------LARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEE--------------------------EEecCCCCCcCCeEEEEECCH
Confidence 457999999999999999999999999999988 778888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
++|.+|+..|||..|+|+.|+|.++.+
T Consensus 257 e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999999999999999987653
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=9.1e-18 Score=141.84 Aligned_cols=154 Identities=29% Similarity=0.414 Sum_probs=130.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||||||.++.+++|.++|-+||.|..|.++. .....+||||+|.+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~-----------------------------r~g~ppfafVeFEd~ 55 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN-----------------------------RPGPPPFAFVEFEDP 55 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEecc-----------------------------CCCCCCeeEEEecCc
Confidence 468999999999999999999999999998887431 224578999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCC------------------CCCCcCCCCceEEEeCCCCcCcHHHHHHH
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE------------------RAPRVFEPGFRIYVGNLPWEVDNARLEQV 299 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~------------------~~~~~~~~~~~lfV~nLp~~~tee~L~~~ 299 (365)
.+|..||.--+|..++|.+|+|.++........ +.+....+.++|.|.+||....+++|+.+
T Consensus 56 RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDH 135 (241)
T KOG0105|consen 56 RDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDH 135 (241)
T ss_pred cchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHH
Confidence 999999999899999999999998865432111 11112234468999999999999999999
Q ss_pred HhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 017842 300 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 347 (365)
Q Consensus 300 F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~ 347 (365)
..+.|.|....+.+| |++.|.|-..++..-|+..|+...+.
T Consensus 136 mReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 136 MREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred HHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 999999999999887 47999999999999999999988763
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.7e-18 Score=153.82 Aligned_cols=183 Identities=28% Similarity=0.481 Sum_probs=151.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..++++||||-|...-.+++++.+|..||.|.++. ++ .-..|.++|+|||.|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~t--------------------------vl-rg~dg~sKGCAFVKf~ 68 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECT--------------------------VL-RGPDGNSKGCAFVKFS 68 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeE--------------------------Ee-cCCCCCCCCceEEEec
Confidence 33678999999999999999999999999999986 33 3347789999999999
Q ss_pred CHHHHHHHHHHHccCcc-cC--eeEEEeecCCCCCC--------------------------------------------
Q 017842 236 TVEEAEKAVEMFHRYDI-DG--RLLTVNKAAPRGTQ-------------------------------------------- 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~-~g--r~l~V~~a~~~~~~-------------------------------------------- 268 (365)
+.-+|..||..|+|..- -| -.|.|.++.....+
T Consensus 69 s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~ 148 (371)
T KOG0146|consen 69 SHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVA 148 (371)
T ss_pred cchHHHHHHHHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998543 33 45666555322100
Q ss_pred --------------------------------------------------------------------------------
Q 017842 269 -------------------------------------------------------------------------------- 268 (365)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (365)
T Consensus 149 ~~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng 228 (371)
T KOG0146|consen 149 GPYLSPMAAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANG 228 (371)
T ss_pred ccccChhhhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcC
Confidence
Q ss_pred ----CCC------------------------------------------CCCcCCCCceEEEeCCCCcCcHHHHHHHHhc
Q 017842 269 ----PER------------------------------------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSE 302 (365)
Q Consensus 269 ----~~~------------------------------------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~ 302 (365)
+.. -.+..+.+|.|||..||-+..+.+|-++|-.
T Consensus 229 ~~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P 308 (371)
T KOG0146|consen 229 LHPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP 308 (371)
T ss_pred CccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc
Confidence 000 0001245789999999999999999999999
Q ss_pred cCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccCCCC
Q 017842 303 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 365 (365)
Q Consensus 303 ~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~~~~ 365 (365)
||.|++.++..|+.|+.+|.||||.|.+..++..||..|||..|+-++|+|++-++|.-.++|
T Consensus 309 FGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRPY 371 (371)
T KOG0146|consen 309 FGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 371 (371)
T ss_pred ccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999998877655543
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=7.7e-18 Score=158.52 Aligned_cols=82 Identities=28% Similarity=0.537 Sum_probs=77.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
..|||++||.+.-+.+|-..|..||.|...++..|+.+|.++.|+||.|.+..+|..||..|||..+++++|.|+...++
T Consensus 425 anlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 425 ANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred cceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred cc
Q 017842 360 QR 361 (365)
Q Consensus 360 ~~ 361 (365)
-.
T Consensus 505 ~n 506 (510)
T KOG0144|consen 505 NN 506 (510)
T ss_pred CC
Confidence 54
No 33
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=1.7e-17 Score=140.23 Aligned_cols=85 Identities=47% Similarity=0.852 Sum_probs=80.6
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
...++|||+|||+.+++++|+++|..||.|..|+|+.++.+++++|||||+|.+.++|..||..||+..|.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 017842 357 EDRQR 361 (365)
Q Consensus 357 ~~~~~ 361 (365)
..++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87764
No 34
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.74 E-value=1.3e-16 Score=146.62 Aligned_cols=185 Identities=19% Similarity=0.350 Sum_probs=143.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+..+..|||.|||.++|-+++..+|++||-|..-- -.+ ...+++.++ ..|..+|-|.+.|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~-----~t~-------------epk~KlYrd-~~G~lKGDaLc~y 190 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDP-----QTG-------------EPKVKLYRD-NQGKLKGDALCCY 190 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccC-----CCC-------------CeeEEEEec-CCCCccCceEEEe
Confidence 355577799999999999999999999999764310 000 111224444 4599999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC-----------------------------C-CCCCcCCCCceEEE
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP-----------------------------E-RAPRVFEPGFRIYV 284 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~-----------------------------~-~~~~~~~~~~~lfV 284 (365)
--.+++.-|+..|++..|.|+.|+|..|....... . ..++.....++|.+
T Consensus 191 ~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~ 270 (382)
T KOG1548|consen 191 IKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVIL 270 (382)
T ss_pred ecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEe
Confidence 99999999999999999999999998775321100 0 01223344569999
Q ss_pred eCCC----CcCc-------HHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 285 GNLP----WEVD-------NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 285 ~nLp----~~~t-------ee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
+||- +..+ .++|.+-|++||.|..|.|. + +.+.|.+-|.|.+...|..|++.|+|+.|.||+|..
T Consensus 271 kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A 346 (382)
T KOG1548|consen 271 KNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTA 346 (382)
T ss_pred eecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEE
Confidence 9993 2222 46788889999999999775 3 467999999999999999999999999999999999
Q ss_pred EEccccccC
Q 017842 354 NVAEDRQRR 362 (365)
Q Consensus 354 ~~a~~~~~~ 362 (365)
+....+.+.
T Consensus 347 ~i~DG~t~~ 355 (382)
T KOG1548|consen 347 SIWDGKTKF 355 (382)
T ss_pred EEeCCccee
Confidence 988776653
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.73 E-value=1.3e-16 Score=139.64 Aligned_cols=166 Identities=20% Similarity=0.378 Sum_probs=140.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 158 EDAKLFVGNLPYDVDSEKLAM----LFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~----~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
+..||||.||+-.+..++|+. +|++||.|..|. -..+.+.+|.|||+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~-----------------------------a~kt~KmRGQA~Vv 58 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS-----------------------------AFKTPKMRGQAFVV 58 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEE-----------------------------ecCCCCccCceEEE
Confidence 345999999999999988877 999999987664 12467889999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC----------------------------C-------------
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER----------------------------A------------- 272 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~----------------------------~------------- 272 (365)
|.+.+.|-.|+..|+|..|.|+.++|.++......-.+ .
T Consensus 59 Fk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~ 138 (221)
T KOG4206|consen 59 FKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF 138 (221)
T ss_pred ecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc
Confidence 99999999999999999999999999988765421110 0
Q ss_pred -CCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-Cee
Q 017842 273 -PRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRA 350 (365)
Q Consensus 273 -~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~-gr~ 350 (365)
.....+...||+.|||..++.+.|..+|..|.....||++... .|.|||+|.+...|..|...|.|..+. ...
T Consensus 139 ~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~ 213 (221)
T KOG4206|consen 139 LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNT 213 (221)
T ss_pred cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCce
Confidence 1124566799999999999999999999999999999998654 789999999999999999999998885 788
Q ss_pred EEEEEcc
Q 017842 351 IRVNVAE 357 (365)
Q Consensus 351 l~V~~a~ 357 (365)
+.|.+++
T Consensus 214 m~i~~a~ 220 (221)
T KOG4206|consen 214 MQITFAK 220 (221)
T ss_pred EEecccC
Confidence 8888875
No 36
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=5.3e-17 Score=146.58 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+-+||||+.|++++++..|+..|+.||+|..|+ ++.+..||.++|||||+|.++
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~Ikrir--------------------------lV~d~vTgkskGYAFIeye~e 153 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIR--------------------------LVRDKVTGKSKGYAFIEYEHE 153 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEE--------------------------EeeecccCCccceEEEEeccH
Confidence 688999999999999999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
.++..|.+..+|..|+|+.|.|++-.-+
T Consensus 154 rdm~~AYK~adG~~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 154 RDMKAAYKDADGIKIDGRRILVDVERGR 181 (335)
T ss_pred HHHHHHHHhccCceecCcEEEEEecccc
Confidence 9999999999999999999999876543
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=9.6e-17 Score=155.63 Aligned_cols=167 Identities=29% Similarity=0.486 Sum_probs=133.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
+.||||||-+++++..|+..|+.||.|+.|. +..+..+|+++|||||+|.+.+.
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~--------------------------l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQ--------------------------LTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeee--------------------------eccccccccccCcceEEEecHHH
Confidence 3499999999999999999999999999887 67777899999999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCCCCCCC------------------------------------------------
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER------------------------------------------------ 271 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~------------------------------------------------ 271 (365)
|.+|+..|||..+-|+.|+|.....+......
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 99999999999999999999654322110000
Q ss_pred ----------------C-------CCcCCCCceEEEeCC--CCcCc--------HHHHHHHHhccCCeEEEEEEeeCCCC
Q 017842 272 ----------------A-------PRVFEPGFRIYVGNL--PWEVD--------NARLEQVFSEHGKVVNARVVYDRETG 318 (365)
Q Consensus 272 ----------------~-------~~~~~~~~~lfV~nL--p~~~t--------ee~L~~~F~~~G~V~~v~i~~d~~~~ 318 (365)
. +....+.-++.+.|+ |...| .+++.+-|.+||.|..|.+....
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns--- 489 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS--- 489 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC---
Confidence 0 000022335556666 22222 37788999999999999886442
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 319 RSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 319 ~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
-|+.||.|.+.+.|..|+.+|||.+|.||-|.+.|-.
T Consensus 490 --~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 490 --AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred --CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 4899999999999999999999999999999998854
No 38
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.68 E-value=1.1e-15 Score=146.50 Aligned_cols=168 Identities=20% Similarity=0.302 Sum_probs=135.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...-|-+++|||.+|+++|.+||+.|+ |++ +++.+.+|+..|-|||+|.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~----------------------------~~~~r~~Gr~sGeA~Ve~~se 59 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IEN----------------------------LEIPRRNGRPSGEAYVEFTSE 59 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeE----------------------------EEEeccCCCcCcceEEEeech
Confidence 456789999999999999999999986 444 444556899999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC---CCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEE-EEEEe
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER---APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN-ARVVY 313 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~---~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~-v~i~~ 313 (365)
+++++|+++ +...+..|.|.|-.+......-.. .+....+-..|.+++|||.||+++|.++|+..-.|.. +.++.
T Consensus 60 edv~~Alkk-dR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~ 138 (510)
T KOG4211|consen 60 EDVEKALKK-DRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPM 138 (510)
T ss_pred HHHHHHHHh-hHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeec
Confidence 999999998 999999999999877554432111 1111133458999999999999999999998865555 33455
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 314 DRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 314 d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+ ..+++.|=|||+|.+.+.|++||. -|...|+-|-|.|-.+.
T Consensus 139 d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 139 D-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred c-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 5 457799999999999999999999 58888988988886543
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.65 E-value=5.9e-15 Score=139.27 Aligned_cols=171 Identities=33% Similarity=0.560 Sum_probs=141.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHH-ccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFE-KAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
..|.|||.|||+++.+.+|+++|. +.|.|+.|. ++.+ ..++++|+|.|+|++
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yve--------------------------Ll~D-~~GK~rGcavVEFk~ 95 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVE--------------------------LLFD-ESGKARGCAVVEFKD 95 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeee--------------------------eecc-cCCCcCCceEEEeeC
Confidence 466799999999999999999995 689999987 4444 488999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC--------------------------------------------CCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ--------------------------------------------PERA 272 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~--------------------------------------------~~~~ 272 (365)
+|.+++|++.||.+.+.||.|.|......... ..+.
T Consensus 96 ~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~ 175 (608)
T KOG4212|consen 96 PENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRL 175 (608)
T ss_pred HHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCccccccc
Confidence 99999999999999999999999644321000 0000
Q ss_pred CC---------------------------------cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCC
Q 017842 273 PR---------------------------------VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR 319 (365)
Q Consensus 273 ~~---------------------------------~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~ 319 (365)
.+ ..+-..++||.||.+.+....|++.|.-.|.|..|-+-.|+. |.
T Consensus 176 sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~ 254 (608)
T KOG4212|consen 176 SRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GN 254 (608)
T ss_pred ccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cc
Confidence 00 012235899999999999999999999999999999988865 68
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 320 SRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 320 ~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
++|||.|+|.+.-.|-.||..|++.-+..++..++..
T Consensus 255 s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 255 SRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred cCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 9999999999999999999999988888888777763
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.8e-15 Score=127.87 Aligned_cols=84 Identities=38% Similarity=0.589 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+++|.+||.|..+. ++.+..+++++|||||+|.+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~--------------------------i~~d~~tg~~kGfaFV~F~~~ 86 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK--------------------------VIVDRETGRSRGFGFVNFNDE 86 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE--------------------------EEecCCCCCcceEEEEEECCH
Confidence 467899999999999999999999999999988 788888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
++|++|+..||+..|+|+.|+|.++..+..
T Consensus 87 e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 87 GAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred HHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 999999999999999999999999876544
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=2.3e-15 Score=149.73 Aligned_cols=171 Identities=25% Similarity=0.342 Sum_probs=136.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...+.++|+|||..+..++|...|..||.|..+.+ + ...--|+|+|.+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvll----------------------------p----~~G~~aiv~fl~ 430 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLL----------------------------P----PGGTGAIVEFLN 430 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeec----------------------------C----cccceeeeeecC
Confidence 35678999999999999999999999999987532 1 122348999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC-------------CC-------C-------CC---------------C
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ-------------PE-------R-------AP---------------R 274 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~-------------~~-------~-------~~---------------~ 274 (365)
...|.+|+..|....+...++++.++....-. .. + .. .
T Consensus 431 p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~ 510 (725)
T KOG0110|consen 431 PLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAE 510 (725)
T ss_pred ccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhh
Confidence 99999999999999999888888655311100 00 0 00 0
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC---CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET---GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 351 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~---~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l 351 (365)
.....++|||.||+|..|.+.|..+|...|.|..+.|...+.. -.+.|||||+|.+.++|..|++.|+|+.++|+.|
T Consensus 511 ~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l 590 (725)
T KOG0110|consen 511 DEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKL 590 (725)
T ss_pred ccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceE
Confidence 0112235999999999999999999999999999998765432 1245999999999999999999999999999999
Q ss_pred EEEEcccc
Q 017842 352 RVNVAEDR 359 (365)
Q Consensus 352 ~V~~a~~~ 359 (365)
.|+++..+
T Consensus 591 ~lk~S~~k 598 (725)
T KOG0110|consen 591 ELKISENK 598 (725)
T ss_pred EEEeccCc
Confidence 99999833
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=3.4e-15 Score=109.71 Aligned_cols=70 Identities=39% Similarity=0.797 Sum_probs=67.7
Q ss_pred EEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 282 lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
|||+|||..+++++|+++|+.||.|..+.+..+ .++..+|||||+|.+.++|.+|+..|+|..++|++||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6789999999999999999999999999999999986
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=8.9e-15 Score=134.60 Aligned_cols=162 Identities=33% Similarity=0.565 Sum_probs=126.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||||||+++++++|.++|..||.|..+. +..++.++.++|||||.|.+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~--------------------------~~~d~~~~~~~g~~~v~f~~~~ 168 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR--------------------------LVRDRETGKSRGFAFVEFESEE 168 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE--------------------------eeeccccCccCceEEEEecCHH
Confidence 68999999999999999999999999998777 6777789999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCC----CCCCCC------------CCCCcCCCCceEEEeCCCCcCcHHHHHHHHhc
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAP----RGTQPE------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 302 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~----~~~~~~------------~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~ 302 (365)
+|..|+..++|..|.|+.|.|.++.. +..... ...........++++|++..++...+...|..
T Consensus 169 ~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (306)
T COG0724 169 SAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS 248 (306)
T ss_pred HHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc
Confidence 99999999999999999999999542 222210 01122344568999999999999999999999
Q ss_pred cCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 017842 303 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346 (365)
Q Consensus 303 ~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l 346 (365)
+|.+..+.+..........++.++.+.....+..++........
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
T COG0724 249 RGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKI 292 (306)
T ss_pred cccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceee
Confidence 99997777766655444555555555555555555554333333
No 44
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2e-15 Score=133.38 Aligned_cols=154 Identities=29% Similarity=0.508 Sum_probs=130.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
..||||+||+.+.+.+|..||..||.+..+.+ -.|||||+|.+..+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m----------------------------------k~gf~fv~fed~rd 47 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM----------------------------------KNGFGFVEFEDPRD 47 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee----------------------------------ecccceeccCchhh
Confidence 36999999999999999999999999988763 36899999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCCCCC------CC------CCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeE
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRGTQP------ER------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 307 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~~~~------~~------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~ 307 (365)
|..|+..|||..|.|-.+.|.++....... .+ ........++++|.|+...+.+++|..+|..+|.+.
T Consensus 48 a~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~ 127 (216)
T KOG0106|consen 48 ADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVT 127 (216)
T ss_pred hhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCc
Confidence 999999999999999888888887532111 00 111234457899999999999999999999999996
Q ss_pred EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 308 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 308 ~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
+..+ ..+++||+|....+|.+|+..|+|..+.|++|.+.+
T Consensus 128 ~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 128 YVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 6655 266899999999999999999999999999999944
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.59 E-value=4e-14 Score=123.22 Aligned_cols=161 Identities=20% Similarity=0.259 Sum_probs=121.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
..-|||||.+||.++...+|+.+|..|---+...+++ +.+.....+.+||++|.+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~-------------------------Tsk~~~~~~pvaFatF~s 86 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKY-------------------------TSKGDQVCKPVAFATFTS 86 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeee-------------------------ccCCCccccceEEEEecc
Confidence 3578999999999999999999999875555554432 122222345899999999
Q ss_pred HHHHHHHHHHHccCccc---CeeEEEeecCCCCCCCCCCCC---------------------------------------
Q 017842 237 VEEAEKAVEMFHRYDID---GRLLTVNKAAPRGTQPERAPR--------------------------------------- 274 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~---gr~l~V~~a~~~~~~~~~~~~--------------------------------------- 274 (365)
...|..|+.+|||+.|+ +..|++..++.......+...
T Consensus 87 ~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~ 166 (284)
T KOG1457|consen 87 HQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEP 166 (284)
T ss_pred hHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCc
Confidence 99999999999999994 678888776543221100000
Q ss_pred ---------------------------------------cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeC
Q 017842 275 ---------------------------------------VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR 315 (365)
Q Consensus 275 ---------------------------------------~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~ 315 (365)
....+.+|||-||..++++++|+.+|+.|-....++|...
T Consensus 167 ~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~- 245 (284)
T KOG1457|consen 167 GNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR- 245 (284)
T ss_pred cccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-
Confidence 0011348999999999999999999999988777777522
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 017842 316 ETGRSRGFGFVTMSSETELNDAIAALDGQNL 346 (365)
Q Consensus 316 ~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l 346 (365)
+| .-.||+.|.+.+.|..||..|.|..|
T Consensus 246 -~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 246 -GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred -CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 23 34799999999999999999988766
No 46
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=8.4e-15 Score=140.84 Aligned_cols=85 Identities=27% Similarity=0.467 Sum_probs=80.1
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
.....++|||+|||+++|+++|+++|+.||.|+.|+|++|..+++++|||||+|.+.++|.+||..||+..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecccc
Q 017842 355 VAEDR 359 (365)
Q Consensus 355 ~a~~~ 359 (365)
|+++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98754
No 47
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=6.7e-15 Score=117.48 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=75.2
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.++|||+||.+.+++++|+++|+.+|.|..|.+-.|+.+..+.|||||+|.+.++|+.|++.++|..|..|.|+|.|.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 359999999999999999999999999999999999999999999999999999999999999999999999999874
No 48
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=127.11 Aligned_cols=78 Identities=36% Similarity=0.648 Sum_probs=73.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
++||||||+|.+..+.|+++|+.||+|+...|+.|+.+|++||||||+|.+.++|.+|++ --+-.|+||+..+.+|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 489999999999999999999999999999999999999999999999999999999999 356689999999988763
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=4.5e-14 Score=104.24 Aligned_cols=70 Identities=39% Similarity=0.761 Sum_probs=65.3
Q ss_pred EEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 282 lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
|||+|||+.+++++|+++|+.||.|..+++.+++. +.++|+|||+|.+.++|.+|+..++|..++||+|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999999999999985
No 50
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.2e-14 Score=125.55 Aligned_cols=83 Identities=31% Similarity=0.488 Sum_probs=79.5
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..++|.|.||+.++++.+|+++|..||.|..|.|.+|+.||.+||||||.|.+.++|.+||..|||.-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
++.
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 863
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=4.7e-14 Score=103.56 Aligned_cols=70 Identities=40% Similarity=0.697 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHH
Q 017842 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAE 241 (365)
Q Consensus 162 vfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~ 241 (365)
|||+|||.++++++|+.+|++||.|..+. +..+ ..++.+|+|||+|.+.++|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~--------------------------~~~~-~~~~~~~~a~V~F~~~~~a~ 53 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIK--------------------------VMRN-SSGKSKGYAFVEFESEEDAE 53 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEE--------------------------EEEE-TTSSEEEEEEEEESSHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccc--------------------------cccc-ccccccceEEEEEcCHHHHH
Confidence 79999999999999999999999998877 4444 67889999999999999999
Q ss_pred HHHHHHccCcccCeeEE
Q 017842 242 KAVEMFHRYDIDGRLLT 258 (365)
Q Consensus 242 ~Al~~lng~~~~gr~l~ 258 (365)
+|+..|+|..++|+.|+
T Consensus 54 ~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 54 KALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHTTEEETTEEEE
T ss_pred HHHHHcCCCEECccCcC
Confidence 99999999999999986
No 52
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=1.3e-14 Score=124.79 Aligned_cols=82 Identities=37% Similarity=0.580 Sum_probs=78.6
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
....++|.|-||-+.++.++|+.+|++||.|-.|.|++|+.|+.++|||||.|....+|+.|+.+|+|.+|+|+.|+|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 017842 356 AE 357 (365)
Q Consensus 356 a~ 357 (365)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 87
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=7.3e-14 Score=141.41 Aligned_cols=118 Identities=23% Similarity=0.365 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR 315 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~ 315 (365)
-.++|.+|+..++|+.+........+..+..... .......++|||+|||+++++++|+++|+.||.|..|+|++|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~---~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D- 93 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWS---GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD- 93 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCccc---CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-
Confidence 3577888998889988877766666654443321 111234579999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeeEEEEEcc
Q 017842 316 ETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAE 357 (365)
Q Consensus 316 ~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~-gr~l~V~~a~ 357 (365)
.+|+++|||||+|.+.++|.+||..||+..+. |+.|.|.++.
T Consensus 94 ~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 94 FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 78999999999999999999999999999885 7887776654
No 54
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=8.9e-14 Score=126.14 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=71.5
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.||.|..|+|+++.. .+|||||+|.+.++|..||. |+|..|.||.|+|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 35999999999999999999999999999999998853 47999999999999999997 999999999999999975
Q ss_pred c
Q 017842 359 R 359 (365)
Q Consensus 359 ~ 359 (365)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4.3e-14 Score=124.26 Aligned_cols=80 Identities=38% Similarity=0.540 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.-++||||+|+|.+..+.|+++|++||.|..+. |+.|+.+++++|||||+|.+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eav--------------------------vitd~~t~rskGyGfVTf~d~ 64 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAV--------------------------VITDKNTGRSKGYGFVTFRDA 64 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEE--------------------------EEeccCCccccceeeEEeecH
Confidence 356899999999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
++|.+||+. .+-.|+||...|+++.-
T Consensus 65 ~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 65 EAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred HHHHHHhcC-CCCcccccccccchhhh
Confidence 999999997 66779999999988765
No 56
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3.5e-15 Score=125.97 Aligned_cols=83 Identities=31% Similarity=0.620 Sum_probs=78.7
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
.-|||||||+.+|+.+|-.+|+.||.|+.|.++||+.||+++||||+.|.+..+..-|+.+|||..|.||.|+|......
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred ccC
Q 017842 360 QRR 362 (365)
Q Consensus 360 ~~~ 362 (365)
..+
T Consensus 116 k~p 118 (219)
T KOG0126|consen 116 KKP 118 (219)
T ss_pred cCC
Confidence 554
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.5e-13 Score=125.77 Aligned_cols=81 Identities=35% Similarity=0.644 Sum_probs=74.7
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..++|+|.||||...+-||+.+|.+||.|.+|.|+.+. +-+||||||+|.+.++|.+|-..|||..+.||+|.|..|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34599999999999999999999999999999999773 5579999999999999999999999999999999999987
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
.|-
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 653
No 58
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.3e-13 Score=123.21 Aligned_cols=102 Identities=36% Similarity=0.638 Sum_probs=88.1
Q ss_pred eEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHH
Q 017842 256 LLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELN 335 (365)
Q Consensus 256 ~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~ 335 (365)
.|.|.++..+..+.... ...+.-+||+.|...++-+.|++.|.+||.|..++|+||..|+++||||||.|.++.+|+
T Consensus 42 e~~v~wa~~p~nQsk~t---~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAE 118 (321)
T KOG0148|consen 42 ELKVNWATAPGNQSKPT---SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAE 118 (321)
T ss_pred hhccccccCcccCCCCc---cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHH
Confidence 56677766553222221 122557999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCeeEEEEEccccc
Q 017842 336 DAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 336 ~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
.||..|||..|++|.||-.||..|+
T Consensus 119 nAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 119 NAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHhCCeeeccceeeccccccCc
Confidence 9999999999999999999998765
No 59
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.7e-13 Score=115.35 Aligned_cols=78 Identities=33% Similarity=0.586 Sum_probs=73.7
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+||+..+++.+|..+|..||.+..|.|.+. +.|||||+|.+..+|..|+..|+|..|+|..|+|.++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 469999999999999999999999999999999875 489999999999999999999999999999999999988
Q ss_pred ccc
Q 017842 359 RQR 361 (365)
Q Consensus 359 ~~~ 361 (365)
+++
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 776
No 60
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.8e-13 Score=122.64 Aligned_cols=85 Identities=29% Similarity=0.593 Sum_probs=80.3
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
+|-+||||+-|++++++..|+..|+.||.|+.|+|++|..||+++|||||+|...-+...|.+..+|.+|+|+.|.|.|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccc
Q 017842 357 EDRQR 361 (365)
Q Consensus 357 ~~~~~ 361 (365)
..+..
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 76654
No 61
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=2.1e-13 Score=130.64 Aligned_cols=78 Identities=27% Similarity=0.463 Sum_probs=71.8
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCH--HHHHHHHHHhCCCccCCeeEEEEE
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE--TELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~--~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
.+.+||||||++.+++++|+.+|..||.|..|.|+| .+| ||||||+|.+. .++.+||..|||..+.||.|+|.-
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 346999999999999999999999999999999994 456 99999999987 789999999999999999999999
Q ss_pred cccc
Q 017842 356 AEDR 359 (365)
Q Consensus 356 a~~~ 359 (365)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8764
No 62
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.3e-12 Score=123.71 Aligned_cols=160 Identities=19% Similarity=0.343 Sum_probs=119.0
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCcc---ce
Q 017842 153 FVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSR---GF 229 (365)
Q Consensus 153 ~~~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~ 229 (365)
...+.-.++||||+||++++++.|...|..||.+.. . |.-. .. .......+ ||
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-d--WP~k--------------------~~-~~~~~ppkGs~~Y 308 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-D--WPGK--------------------AN-SRGRAPPKGSYGY 308 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceEe-e--cCCC--------------------cc-ccccCCCCCcccE
Confidence 334456788999999999999999999999998742 1 1100 00 00111233 59
Q ss_pred EEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC---------------CCCCCcCCCCceEEEeCCCCcCcHH
Q 017842 230 GFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP---------------ERAPRVFEPGFRIYVGNLPWEVDNA 294 (365)
Q Consensus 230 afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~---------------~~~~~~~~~~~~lfV~nLp~~~tee 294 (365)
+|+.|.++.++...+..+. .....+.++...+.-... .......++..|||||+||..++.+
T Consensus 309 vflvFe~E~sV~~Ll~aC~---~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~ 385 (520)
T KOG0129|consen 309 VFLVFEDERSVQSLLSACS---EGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAE 385 (520)
T ss_pred EEEEecchHHHHHHHHHHh---hcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHH
Confidence 9999999999987766543 244444443333322111 1133456788899999999999999
Q ss_pred HHHHHHh-ccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHH
Q 017842 295 RLEQVFS-EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339 (365)
Q Consensus 295 ~L~~~F~-~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~ 339 (365)
+|..+|. -||.|.++-|-.|++=+.++|-|-|+|.+.++-.+||.
T Consensus 386 eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 386 ELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred HHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 9999998 79999999999998889999999999999999999998
No 63
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.4e-13 Score=132.56 Aligned_cols=175 Identities=17% Similarity=0.266 Sum_probs=140.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
....+||||||...++..++++...||.+.... ++.+..+|.++||||.+|-+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~--------------------------lv~d~~~g~skg~af~ey~dp 341 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR--------------------------LVKDSATGNSKGFAFCEYCDP 341 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhhe--------------------------eecccccccccceeeeeeeCC
Confidence 456899999999999999999999999998876 778888899999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCC----------------CCcCCCCceEEEeCCC--Cc--------C
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA----------------PRVFEPGFRIYVGNLP--WE--------V 291 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~----------------~~~~~~~~~lfV~nLp--~~--------~ 291 (365)
.....|+..|||..+.+..|.|..+.......... .....+...|++.|+= -. .
T Consensus 342 svtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~Eyee 421 (500)
T KOG0120|consen 342 SVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEE 421 (500)
T ss_pred cchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHH
Confidence 99999999999999999999998776544322111 1122334456666651 11 1
Q ss_pred cHHHHHHHHhccCCeEEEEEEeeCCC---CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 292 DNARLEQVFSEHGKVVNARVVYDRET---GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 292 tee~L~~~F~~~G~V~~v~i~~d~~~---~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
--++++.-|.+||.|..|.|+++... .-+.|-.||+|.+.+++++|+..|+|.+|.||.|...|...
T Consensus 422 IlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 422 ILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 12567777889999999999988222 34567789999999999999999999999999999998753
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.44 E-value=4.3e-13 Score=98.95 Aligned_cols=70 Identities=39% Similarity=0.702 Sum_probs=62.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHH
Q 017842 162 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAE 241 (365)
Q Consensus 162 vfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~ 241 (365)
|||+|||+++++++|.++|..||.|..++ +..++. +..+|+|||+|.+.++|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~--------------------------~~~~~~-~~~~~~a~v~f~~~~~a~ 53 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVR--------------------------LIKNKD-GQSRGFAFVEFSSEEDAK 53 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEE--------------------------EEESTT-SSEEEEEEEEESSHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEE--------------------------EEeeec-cccCCEEEEEeCCHHHHH
Confidence 79999999999999999999999998877 666666 889999999999999999
Q ss_pred HHHHHHccCcccCeeEE
Q 017842 242 KAVEMFHRYDIDGRLLT 258 (365)
Q Consensus 242 ~Al~~lng~~~~gr~l~ 258 (365)
+|+..++|..|+|++|+
T Consensus 54 ~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 54 RALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHHHTTEEETTEEEE
T ss_pred HHHHHCCCcEECCEEcC
Confidence 99999999999999985
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.44 E-value=1.6e-13 Score=116.10 Aligned_cols=81 Identities=38% Similarity=0.561 Sum_probs=77.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
.+|||+||+..++++.||++|-..|.|..++|++|+.++..+|||||+|.+.++|.-|++.||...|.||+|+|..+...
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999844
Q ss_pred c
Q 017842 360 Q 360 (365)
Q Consensus 360 ~ 360 (365)
+
T Consensus 90 ~ 90 (203)
T KOG0131|consen 90 Q 90 (203)
T ss_pred c
Confidence 3
No 66
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=9.3e-13 Score=117.72 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=71.2
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
.+++|||+||++.+|+++|+++|+.||.|..|+|+++. ..+|||||+|.+..+|..|+. |+|..|.|++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999884 456899999999999999997 99999999999999876
Q ss_pred c
Q 017842 358 D 358 (365)
Q Consensus 358 ~ 358 (365)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.42 E-value=1e-12 Score=95.76 Aligned_cols=72 Identities=40% Similarity=0.774 Sum_probs=67.8
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
+|+|+|||..++.++|+++|..||.|..+++.++. +.++|+|||+|.+..+|..|+..|+|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7789999999999999999999999999999999874
No 68
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.42 E-value=6.6e-12 Score=118.10 Aligned_cols=165 Identities=25% Similarity=0.396 Sum_probs=135.5
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 159 DAKLFVGNLPYD-VDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 159 ~~tvfVgnLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...|.|.||... +|.+.|..+|+-||.|.+|. |.+++ +-.|.|.|.+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVk--------------------------il~nk-----kd~ALIQmsd~ 345 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVK--------------------------ILYNK-----KDNALIQMSDG 345 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEE--------------------------eeecC-----Ccceeeeecch
Confidence 578999999865 59999999999999999887 55554 35699999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC--------------------------C-CCcCCCCceEEEeCCCCc
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER--------------------------A-PRVFEPGFRIYVGNLPWE 290 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~--------------------------~-~~~~~~~~~lfV~nLp~~ 290 (365)
..|.-|+..|+|..+.|+.|+|.++++..-...+ + ....+++.+|...|+|..
T Consensus 346 ~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~s 425 (492)
T KOG1190|consen 346 QQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPS 425 (492)
T ss_pred hHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcc
Confidence 9999999999999999999999988766432111 0 012356679999999999
Q ss_pred CcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-eEEEEEccc
Q 017842 291 VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AIRVNVAED 358 (365)
Q Consensus 291 ~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr-~l~V~~a~~ 358 (365)
+++++|+.+|...|......... ++.+-+|++++.+.+.|..|+-.++++.+++. .|||+|++.
T Consensus 426 vsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 426 VSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999998765554432 23356999999999999999999999999765 999999875
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.3e-12 Score=118.69 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||||||+.+++++|+++|+.||.|..++ ++.+.. .+|||||+|.+.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~--------------------------I~~d~~---~~GfAFVtF~d~e 54 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVE--------------------------MQSENE---RSQIAYVTFKDPQ 54 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EeecCC---CCCEEEEEeCcHH
Confidence 57999999999999999999999999999988 444432 4799999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
+|..|+. |||..|.|+.|+|.++....
T Consensus 55 aAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 55 GAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred HHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 9999995 79999999999999886543
No 70
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.6e-13 Score=119.24 Aligned_cols=82 Identities=33% Similarity=0.550 Sum_probs=78.9
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++||||+|-..+++.-|...|-.||+|..|.|+.|.+++++||||||+|.-.++|..||..||+..|.||.|+|.||++
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc
Q 017842 359 RQ 360 (365)
Q Consensus 359 ~~ 360 (365)
..
T Consensus 90 ~k 91 (298)
T KOG0111|consen 90 EK 91 (298)
T ss_pred cc
Confidence 54
No 71
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.5e-12 Score=94.57 Aligned_cols=71 Identities=45% Similarity=0.847 Sum_probs=67.4
Q ss_pred EeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 284 VGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 284 V~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
|+|||..+++++|+.+|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999999999999874
No 72
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=5.9e-13 Score=130.12 Aligned_cols=82 Identities=41% Similarity=0.795 Sum_probs=79.8
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
+.|||||+|+.+++++|..+|+..|.|..++++.|+.+|+++||||++|.+.+.|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cc
Q 017842 360 QR 361 (365)
Q Consensus 360 ~~ 361 (365)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 65
No 73
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.5e-12 Score=115.00 Aligned_cols=82 Identities=29% Similarity=0.493 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+..+|-|.|||.++++.+|..+|..||.|..+. +.+++.||.++|||||.|.+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvy--------------------------lardK~TG~~kGFAFVtF~sR 241 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVY--------------------------LARDKETGLSKGFAFVTFESR 241 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeE--------------------------EEEccccCcccceEEEEEecH
Confidence 577899999999999999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
++|.+||..|||+-++.-.|+|.++.|+
T Consensus 242 ddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 242 DDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHHHHHHHHccCcccceEEEEEEecCCC
Confidence 9999999999999999999999999875
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.5e-12 Score=124.93 Aligned_cols=78 Identities=26% Similarity=0.430 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...+||||||++++++++|..+|..||.|..+. |+ +.+| +|||||+|...
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVE--------------------------Ip--RETG--RGFAFVEMssd 58 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVE--------------------------FV--RTKG--RSFAYIDFSPS 58 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------Ee--cccC--CceEEEEecCC
Confidence 356899999999999999999999999999988 44 4566 99999999987
Q ss_pred --HHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 238 --EEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 238 --e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
.++.+||..|||..+.||.|+|..+.+.
T Consensus 59 ddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 59 STNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 6899999999999999999999988654
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.38 E-value=1.8e-11 Score=115.97 Aligned_cols=72 Identities=35% Similarity=0.576 Sum_probs=67.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
|+|||+|||+++|++.|+.-|..||.|.++.|. +.|+++| .|.|.+.++|++|+..|+|..+.||.|.|+|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 589999999999999999999999999999994 4577777 89999999999999999999999999999984
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.9e-11 Score=113.43 Aligned_cols=173 Identities=20% Similarity=0.368 Sum_probs=135.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...+|||..+-.+.++.+|+..|+.||+|..|. +.+....+..+|||||+|.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~--------------------------LAr~pt~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQ--------------------------LARAPTGRGHKGYGFIEYNNL 262 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEE--------------------------eeccCCCCCccceeeEEeccc
Confidence 467899999999999999999999999999887 677777888999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCC-------------------------------------------------
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ------------------------------------------------- 268 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~------------------------------------------------- 268 (365)
.+...|+..+|-..++|..|+|-.+..+...
T Consensus 263 qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA 342 (544)
T KOG0124|consen 263 QSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPA 342 (544)
T ss_pred cchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCcc
Confidence 9999999999999999999999655322100
Q ss_pred ---------------------------CCCC--CC---------------------------------------------
Q 017842 269 ---------------------------PERA--PR--------------------------------------------- 274 (365)
Q Consensus 269 ---------------------------~~~~--~~--------------------------------------------- 274 (365)
+.+. +.
T Consensus 343 ~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~Q 422 (544)
T KOG0124|consen 343 PRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQ 422 (544)
T ss_pred ccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhh
Confidence 0000 00
Q ss_pred -------------------cCCCCceEEEeCC--CCcCcH---HHHHHHHhccCCeEEEEEEeeCCCCCc----ceEEEE
Q 017842 275 -------------------VFEPGFRIYVGNL--PWEVDN---ARLEQVFSEHGKVVNARVVYDRETGRS----RGFGFV 326 (365)
Q Consensus 275 -------------------~~~~~~~lfV~nL--p~~~te---e~L~~~F~~~G~V~~v~i~~d~~~~~~----kG~afV 326 (365)
.....+.+.++|+ |.++++ .+|.+-|.+||.|..|.|...+.++.- ----||
T Consensus 423 E~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFV 502 (544)
T KOG0124|consen 423 EHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFV 502 (544)
T ss_pred hCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeee
Confidence 0011236778898 555553 679999999999999988766543311 123699
Q ss_pred EecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 327 TMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 327 ~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
+|.....+.+|..+|+|+.|+||++.....
T Consensus 503 efS~~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 503 EFSIASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred eechhhHHHHHHHhhccceecCceeehhhh
Confidence 999999999999999999999999976543
No 77
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=5.4e-12 Score=119.93 Aligned_cols=124 Identities=25% Similarity=0.383 Sum_probs=95.5
Q ss_pred EEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCC--CCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEE
Q 017842 231 FVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ--PERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN 308 (365)
Q Consensus 231 fV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~--~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~ 308 (365)
+-...+.++|.++|..-.| ..|.|.....+-.. +...-.....++.||||.||.++.+++|.-+|++.|.|..
T Consensus 38 ~~~~~~~eaal~al~E~tg-----y~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e 112 (506)
T KOG0117|consen 38 VAGVQSEEAALKALLERTG-----YTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE 112 (506)
T ss_pred ccccccHHHHHHHHHHhcC-----ceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceee
Confidence 3344457777777765343 44555433222111 1111122356789999999999999999999999999999
Q ss_pred EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc-CCeeEEEEEcccc
Q 017842 309 ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL-DGRAIRVNVAEDR 359 (365)
Q Consensus 309 v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l-~gr~l~V~~a~~~ 359 (365)
+|+.+|+.+|.+||||||.|.+.+.|++|++.||+..| .|+.|.|..+..+
T Consensus 113 lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan 164 (506)
T KOG0117|consen 113 LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN 164 (506)
T ss_pred EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec
Confidence 99999999999999999999999999999999999988 6899888776544
No 78
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.3e-12 Score=104.56 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.+.|||||||++-++++.|.++|++||.|..|. .-.++.+...=|||||+|-+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irrii--------------------------MGLdr~kktpCGFCFVeyy~~ 88 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRII--------------------------MGLDRFKKTPCGFCFVEYYSR 88 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeE--------------------------eccccCCcCccceEEEEEecc
Confidence 578999999999999999999999999998876 456677778889999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
++|..|+..++|+.++.++|+|++-.-
T Consensus 89 ~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 89 DDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred hhHHHHHHHhccCcccccceeeecccc
Confidence 999999999999999999999998653
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=4.7e-12 Score=97.62 Aligned_cols=82 Identities=32% Similarity=0.560 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+...+.|||.|||+++|.+++.++|.+||.|..|+|- .+...+|.|||+|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG-----------------------------~~k~TrGTAFVVY 64 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG-----------------------------NTKETRGTAFVVY 64 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEec-----------------------------CccCcCceEEEEe
Confidence 34457899999999999999999999999999988742 2446689999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
.+..+|++|+..|+|..+.++.|.|-+..+.
T Consensus 65 edi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 65 EDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 9999999999999999999999999877654
No 80
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.36 E-value=1.6e-12 Score=121.55 Aligned_cols=178 Identities=21% Similarity=0.306 Sum_probs=143.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...+.|+|++.+++.......++..+|...... .........++|++++.|...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~--------------------------~S~~~~~~~sk~~~s~~f~~k 140 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDAR--------------------------SSSLEDSLSSKGGLSVHFAGK 140 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccch--------------------------hhhhccccccccceeeccccH
Confidence 467999999999999999999999998765544 444456778999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC---CCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEee
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER---APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 314 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~---~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d 314 (365)
+.+..|+.+.-...+.++.+.............. ......+.+-.+|+||++.+++++|+.+|..+|.|..++++.+
T Consensus 141 s~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 141 SQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred HHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 9999999884445667777766555544421111 1122233334459999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 315 RETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 315 ~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
..++.++|||||.|.....+..++.. ....+.|+++++.+..+++..
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 99999999999999999999999986 888999999999999888654
No 81
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=8.6e-12 Score=91.33 Aligned_cols=74 Identities=42% Similarity=0.803 Sum_probs=69.2
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
+|+|+|||..+++++|+++|..+|.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 7799999999999999999999999999999999875
No 82
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.35 E-value=4.9e-12 Score=116.27 Aligned_cols=79 Identities=44% Similarity=0.807 Sum_probs=76.6
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
.++|||+|||+.+++++|+.+|..||.|..+++..++.+++++|||||.|.+..+|..|+..++|..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5799999999999999999999999999999999999899999999999999999999999999999999999999965
No 83
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=6.4e-12 Score=96.90 Aligned_cols=77 Identities=26% Similarity=0.438 Sum_probs=71.2
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
+.-|||+|||+.+|.++..++|.+||.|..|||-..+.| +|-|||.|.+..+|.+|+..|+|..+.+|.|.|-|..+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 347999999999999999999999999999999866554 89999999999999999999999999999999998754
No 84
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=7.7e-12 Score=114.74 Aligned_cols=81 Identities=37% Similarity=0.618 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|+|.|||+...+.+|+..|.+||+|..|+ |+.+ ...+||||||+|.+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVE--------------------------IIfN--ERGSKGFGFVTmen~ 146 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVE--------------------------IIFN--ERGSKGFGFVTMENP 146 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEE--------------------------EEec--cCCCCccceEEecCh
Confidence 356899999999999999999999999999998 4444 335899999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
++|++|-..|+|+.|.||+|.|+.+..+-
T Consensus 147 ~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 147 ADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred hhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 99999999999999999999999988763
No 85
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.9e-11 Score=88.95 Aligned_cols=72 Identities=43% Similarity=0.699 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
+|||+|||..++..+|+.+|..||.|..+. +..+. +.++|+|||+|.+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~--------------------------~~~~~--~~~~~~~~v~f~~~~~a 52 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVK--------------------------IPKDT--GKSKGFAFVEFESEEDA 52 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEE--------------------------EecCC--CCCCceEEEEeCCHHHH
Confidence 589999999999999999999999998876 33333 67889999999999999
Q ss_pred HHHHHHHccCcccCeeEEEe
Q 017842 241 EKAVEMFHRYDIDGRLLTVN 260 (365)
Q Consensus 241 ~~Al~~lng~~~~gr~l~V~ 260 (365)
.+|+..++|..+.|+.|+|.
T Consensus 53 ~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 53 EKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred HHHHHHhCCcEECCEEEeeC
Confidence 99999999999999999873
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.29 E-value=5.8e-11 Score=111.82 Aligned_cols=165 Identities=21% Similarity=0.303 Sum_probs=127.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccce-EEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGF-GFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-afV~f~~ 236 (365)
.--.++|+|+-+-++-+-|+.+|++||.|..|. +- + ++.|| |.|.|.+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi----------------------------TF--~-Knn~FQALvQy~d 197 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII----------------------------TF--T-KNNGFQALVQYTD 197 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEE----------------------------EE--e-cccchhhhhhccc
Confidence 344689999999999999999999999987642 11 1 23344 8999999
Q ss_pred HHHHHHHHHHHccCcccC--eeEEEeecCCCC----------CC--------C------------------------C--
Q 017842 237 VEEAEKAVEMFHRYDIDG--RLLTVNKAAPRG----------TQ--------P------------------------E-- 270 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~g--r~l~V~~a~~~~----------~~--------~------------------------~-- 270 (365)
...|..|...|+|..|-. ..|++++++... .. . .
T Consensus 198 ~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~ai 277 (492)
T KOG1190|consen 198 AVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAI 277 (492)
T ss_pred hhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccC
Confidence 999999999999988833 556665543211 00 0 0
Q ss_pred ---------CCCCcCCC--CceEEEeCC-CCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHH
Q 017842 271 ---------RAPRVFEP--GFRIYVGNL-PWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338 (365)
Q Consensus 271 ---------~~~~~~~~--~~~lfV~nL-p~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al 338 (365)
.......+ .+.|-|.|| +..+|.+-|..+|.-||+|..|.|.+++. --|+|+|.+...|.-|+
T Consensus 278 p~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~ 352 (492)
T KOG1190|consen 278 PSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAM 352 (492)
T ss_pred CccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHH
Confidence 00001111 357888888 56799999999999999999999998753 46999999999999999
Q ss_pred HHhCCCccCCeeEEEEEccc
Q 017842 339 AALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 339 ~~l~~~~l~gr~l~V~~a~~ 358 (365)
..|+|..|.|++|||.+++-
T Consensus 353 ~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 353 EHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred HHhhcceecCceEEEeeccC
Confidence 99999999999999999873
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=9.8e-12 Score=100.33 Aligned_cols=89 Identities=26% Similarity=0.432 Sum_probs=82.4
Q ss_pred CCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeE
Q 017842 272 APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 351 (365)
Q Consensus 272 ~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l 351 (365)
.|+....+..|||.|+....|+++|...|..||.|.++.+-.|+.||..+|||+|+|.+...|++|+..|||..|-|.+|
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 34455567799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccc
Q 017842 352 RVNVAEDRQ 360 (365)
Q Consensus 352 ~V~~a~~~~ 360 (365)
.|.||--+.
T Consensus 145 ~VDw~Fv~g 153 (170)
T KOG0130|consen 145 SVDWCFVKG 153 (170)
T ss_pred eEEEEEecC
Confidence 999997544
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.7e-11 Score=109.73 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+||++.+|+++|++||+.||+|..++ ++.+ +..+|+|||+|.++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~--------------------------I~~D---~et~gfAfVtF~d~ 54 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVE--------------------------IIRS---GEYACTAYVTFKDA 54 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EecC---CCcceEEEEEECCH
Confidence 467999999999999999999999999999988 5555 35568999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
++|..|+. |+|..|.|+.|.|..+...
T Consensus 55 ~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 55 YALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred HHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 99999995 5999999999999876543
No 89
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=5.3e-13 Score=112.88 Aligned_cols=84 Identities=23% Similarity=0.479 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...-|||||||++.|+.+|.-.|++||.|..|. ++++..||.++||||+.|.+.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin--------------------------LiRDk~TGKSKGFaFLcYEDQ 87 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN--------------------------LIRDKKTGKSKGFAFLCYEDQ 87 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEE--------------------------EEecCCCCcccceEEEEecCc
Confidence 456799999999999999999999999998887 899999999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.+-.-|+..|||..|.||.|+|+++.....
T Consensus 88 RSTILAVDN~NGiki~gRtirVDHv~~Yk~ 117 (219)
T KOG0126|consen 88 RSTILAVDNLNGIKILGRTIRVDHVSNYKK 117 (219)
T ss_pred cceEEEEeccCCceecceeEEeeecccccC
Confidence 999999999999999999999998876544
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=8.8e-12 Score=122.68 Aligned_cols=182 Identities=23% Similarity=0.424 Sum_probs=142.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..+.++|+++|+.++++.+..+|..-=. ..-+...+ .+. -+.....+..++|||++|.+.
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~--~~gl~~~~----~g~--------------~~~s~~~n~~~nfa~ie~~s~ 233 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMH--ASGLNQAP----DGP--------------SFVSVQLNLEKNFAFIEFRSI 233 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhh--hcccccCC----CCC--------------ceeeeeecccccceeEEecCC
Confidence 3567999999999999999999965200 00000000 000 111223456788999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCC---------------CCCCcCCCCceEEEeCCCCcCcHHHHHHHHhc
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 302 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~---------------~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~ 302 (365)
+.|..|... ++..+.|+.+++.........+. ..+........+||+|||..+++.+++++...
T Consensus 234 ~~at~~~~~-~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~ 312 (500)
T KOG0120|consen 234 SEATEAMAL-DGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS 312 (500)
T ss_pred Cchhhhhcc-cchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh
Confidence 999988776 99999999999965554433221 12233455679999999999999999999999
Q ss_pred cCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 303 HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 303 ~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
||.+...+++.+..+|.++||||.+|.+......|+..|||..+++.+|.|+.|-...
T Consensus 313 fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 313 FGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 9999999999999999999999999999999999999999999999999999886543
No 91
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=2.7e-11 Score=89.55 Aligned_cols=62 Identities=26% Similarity=0.478 Sum_probs=56.1
Q ss_pred HHHHHHHHh----ccCCeEEEE-EEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 293 NARLEQVFS----EHGKVVNAR-VVYDRET--GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 293 ee~L~~~F~----~~G~V~~v~-i~~d~~~--~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
+++|+++|+ .||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999996 7777766 8999999999999999999999999999999999863
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=3.6e-11 Score=84.75 Aligned_cols=56 Identities=34% Similarity=0.680 Sum_probs=51.2
Q ss_pred HHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 296 LEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 296 L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
|+++|++||.|..+.+.+.. +|+|||+|.+.++|..|+..|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997553 689999999999999999999999999999999996
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=4.7e-11 Score=86.50 Aligned_cols=71 Identities=44% Similarity=0.741 Sum_probs=64.2
Q ss_pred EcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHHHH
Q 017842 164 VGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKA 243 (365)
Q Consensus 164 VgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~~A 243 (365)
|+|||..++.++|+.+|..||.|..+. +..+..++.++|+|||.|.+.++|..|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~--------------------------i~~~~~~~~~~~~a~v~f~~~~~a~~a 54 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVR--------------------------LVRDKDTGKSKGFAFVEFESEEDAEKA 54 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEE--------------------------EEeCCCCCCCCceEEEEeCCHHHHHHH
Confidence 689999999999999999999998877 555555788899999999999999999
Q ss_pred HHHHccCcccCeeEEEe
Q 017842 244 VEMFHRYDIDGRLLTVN 260 (365)
Q Consensus 244 l~~lng~~~~gr~l~V~ 260 (365)
+..+++..++|+.|+|.
T Consensus 55 ~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 55 LEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHcCCCeeCCcEEEeC
Confidence 99999999999999873
No 94
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.23 E-value=1.4e-11 Score=106.33 Aligned_cols=79 Identities=35% Similarity=0.476 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
-.+|-|-||.+-++.++|..+|++||.|-.|. |..+..|..++|||||.|....
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVy--------------------------IPrdr~Tr~sRgFaFVrf~~k~ 66 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVY--------------------------IPRDRYTRQSRGFAFVRFHDKR 66 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCccccee--------------------------cccccccccccceeEEEeeecc
Confidence 45799999999999999999999999999988 8889999999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
+|+.|+..|+|.+++|+.|+|..|.
T Consensus 67 daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 67 DAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred hHHHHHHhhcceeeccceeeehhhh
Confidence 9999999999999999999998764
No 95
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.6e-11 Score=102.22 Aligned_cols=79 Identities=29% Similarity=0.413 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
-.++||||||+.++++.+|...|..||++..+-| .. ...|||||+|.++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWv--------------------------Ar-----nPPGfAFVEFed~ 57 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWV--------------------------AR-----NPPGFAFVEFEDP 57 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEE--------------------------ee-----cCCCceEEeccCc
Confidence 3679999999999999999999999999877642 21 5689999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.+|..|+..|+|..|.|..|+|..+.-...
T Consensus 58 RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 58 RDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred ccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 999999999999999999999998765543
No 96
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.21 E-value=4.3e-11 Score=111.75 Aligned_cols=170 Identities=20% Similarity=0.308 Sum_probs=127.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHcc----CCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKA----GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~----G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.-.|-.++||++++..++..||..- |-.+.+ +...+..|+..|-|||.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egv---------------------------LFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGV---------------------------LFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccce---------------------------EEEECCCCCcccceEEEe
Confidence 4468899999999999999999631 112222 222334788999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCC-----------------CC------CCCCCCcCCCCceEEEeCCCCcC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG-----------------TQ------PERAPRVFEPGFRIYVGNLPWEV 291 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~-----------------~~------~~~~~~~~~~~~~lfV~nLp~~~ 291 (365)
..+++|..|+.+ |...++.|.|.+.++.... .. +.+.-....+..+|.+++||+..
T Consensus 214 a~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~A 292 (508)
T KOG1365|consen 214 ACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEA 292 (508)
T ss_pred cCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhh
Confidence 999999999998 8888888888764332110 00 00000111224589999999999
Q ss_pred cHHHHHHHHhccC-CeEE--EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 292 DNARLEQVFSEHG-KVVN--ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 292 tee~L~~~F~~~G-~V~~--v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++|..+|..|. .|.. |.++.+. .|++.|-|||+|.+.+.|..|....+++.+.+|.|.|--|.
T Consensus 293 tvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 293 TVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 9999999999885 4555 7777774 58999999999999999999999888888889999886553
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.20 E-value=3.7e-11 Score=117.60 Aligned_cols=81 Identities=37% Similarity=0.688 Sum_probs=77.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
+.|||||+|+++++++|..+|+..|.|..++ +++|+.+|+.+||||++|.+.+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~--------------------------~v~D~~tG~~~G~~f~~~~~~~~ 72 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFR--------------------------LVYDRETGKPKGFGFCEFTDEET 72 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceee--------------------------ecccccCCCcCceeeEecCchhh
Confidence 8999999999999999999999999998887 89999999999999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
+..|+..|||..+.||.|+|.++....
T Consensus 73 ~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 73 AERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred HHHHHHhcCCcccCCceEEeecccccc
Confidence 999999999999999999999886543
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=1.7e-10 Score=84.35 Aligned_cols=74 Identities=45% Similarity=0.722 Sum_probs=65.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
+|+|+|||+.+++++|+++|..+|.|..+. +..+... ..+|+|||.|.+.++|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~--------------------------~~~~~~~-~~~~~~~v~f~s~~~a 53 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVR--------------------------IVRDKDT-KSKGFAFVEFEDEEDA 53 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEE--------------------------EeeCCCC-CcceEEEEEECCHHHH
Confidence 589999999999999999999999998876 3333333 6789999999999999
Q ss_pred HHHHHHHccCcccCeeEEEee
Q 017842 241 EKAVEMFHRYDIDGRLLTVNK 261 (365)
Q Consensus 241 ~~Al~~lng~~~~gr~l~V~~ 261 (365)
..|+..+++..++|+.+.|.+
T Consensus 54 ~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 54 EKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHhCCCeECCeEEEEeC
Confidence 999999999999999999863
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=6.5e-11 Score=95.64 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
....|||.++-..++++++.+.|..||+|.++. +..++.+|..+|||.|+|.+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNih--------------------------LNLDRRtGy~KGYaLvEYet~ 124 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIH--------------------------LNLDRRTGYVKGYALVEYETL 124 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhccccccee--------------------------eccccccccccceeeeehHhH
Confidence 466899999999999999999999999999988 777888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+.|++|+..+||..+.|..|.|+|+-.+.+
T Consensus 125 keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 125 KEAQAAIDALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred HHHHHHHHhccchhhhCCceeEEEEEecCC
Confidence 999999999999999999999999866554
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=6.4e-12 Score=109.32 Aligned_cols=144 Identities=26% Similarity=0.362 Sum_probs=122.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
..++||||+|+...++++-|.++|-+.|+|..+.|+ +...+..+ ||||.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip---------------------------~~~d~~~k-Fa~v~f~~ 58 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIP---------------------------SGQDQEQK-FAYVFFPN 58 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCC---------------------------CCccCCCc-eeeeeccc
Confidence 457899999999999999999999999999776532 22233445 99999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeC----CCCcCcHHHHHHHHhccCCeEEEEEE
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGN----LPWEVDNARLEQVFSEHGKVVNARVV 312 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~n----Lp~~~tee~L~~~F~~~G~V~~v~i~ 312 (365)
+-.+.-|+.++||..+.++.|.| +++.|| |...++.+.+.+.|+..|.+..+|+.
T Consensus 59 E~sv~~a~~L~ng~~l~~~e~q~---------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~ 117 (267)
T KOG4454|consen 59 ENSVQLAGQLENGDDLEEDEEQR---------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIP 117 (267)
T ss_pred ccchhhhhhhcccchhccchhhc---------------------ccccCCCcchhhhhcchhhheeeecccCCCCCcccc
Confidence 99999999999999999999887 455666 77789999999999999999999999
Q ss_pred eeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCee
Q 017842 313 YDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 350 (365)
Q Consensus 313 ~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~ 350 (365)
++.. |+++.++|+.+--..+.-.++..+.+..+.-++
T Consensus 118 ~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 118 TDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred cccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 9875 888999999999888888999988877554333
No 101
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.13 E-value=8.2e-11 Score=106.48 Aligned_cols=75 Identities=33% Similarity=0.669 Sum_probs=71.1
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
.|||||||..+++.+|+.+|+.||.|..|.|+++ ||||...+...+..||++|||..|.|..|.|.-+++|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 7999999999999999999999999999999954 99999999999999999999999999999999999986
Q ss_pred cCC
Q 017842 361 RRS 363 (365)
Q Consensus 361 ~~~ 363 (365)
+.+
T Consensus 76 k~s 78 (346)
T KOG0109|consen 76 KAS 78 (346)
T ss_pred CCc
Confidence 654
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.4e-11 Score=104.13 Aligned_cols=84 Identities=29% Similarity=0.510 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..||||||+|--.+++.-|...|-.||.|..|. +..+-.+.+.+|||||+|...
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIq--------------------------iPlDyesqkHRgFgFVefe~a 62 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQ--------------------------IPLDYESQKHRGFGFVEFEEA 62 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcc--------------------------cccchhcccccceeEEEeecc
Confidence 468999999999999999999999999999887 667778999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
++|..|+..+|+..+.||.|+|+++.|...
T Consensus 63 EDAaaAiDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 63 EDAAAAIDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred chhHHHhhcCchhhhcceeEEEeecCCccc
Confidence 999999999999999999999999988754
No 103
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=5.8e-12 Score=128.00 Aligned_cols=148 Identities=24% Similarity=0.371 Sum_probs=127.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
..++||.||++.+.+.+|...|..+|.|..++ +......++.+|+||++|..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vq--------------------------i~~h~n~~~~rG~~Y~~F~~~~ 720 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQ--------------------------IVIHKNEKRFRGKAYVEFLKPE 720 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHH--------------------------HHHHhhccccccceeeEeecCC
Confidence 34799999999999999999999999888876 3344567889999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 318 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~ 318 (365)
.+.+|+....+..++ +..|||+|+|+..|.+.|+.+|..+|.+..++++..+ .|
T Consensus 721 ~~~aaV~f~d~~~~g-------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~g 774 (881)
T KOG0128|consen 721 HAGAAVAFRDSCFFG-------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AG 774 (881)
T ss_pred chhhhhhhhhhhhhh-------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-cc
Confidence 999999985555444 1279999999999999999999999999999988764 58
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 319 RSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 319 ~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
+++|.|+|.|.+..++.+++...++..+.-+.+.|+.+.+
T Consensus 775 kpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 775 KPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 9999999999999999999998888888877777777543
No 104
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=3.7e-10 Score=96.01 Aligned_cols=78 Identities=29% Similarity=0.515 Sum_probs=70.3
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||..+.+.+|..+|-+||.|..|.+... ..+..||||+|.+..+|..||..-+|..++|.+|+|.|+..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 459999999999999999999999999999988532 34577999999999999999999999999999999999874
Q ss_pred c
Q 017842 359 R 359 (365)
Q Consensus 359 ~ 359 (365)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 3
No 105
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.3e-10 Score=105.01 Aligned_cols=87 Identities=28% Similarity=0.451 Sum_probs=80.6
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
..+|-+.|||.-|.+-+|.++|.-+|+.||.|.+|.|++|+.||.+--||||+|.+..++.+|.-.|++.-|.+|+|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecccccc
Q 017842 355 VAEDRQR 361 (365)
Q Consensus 355 ~a~~~~~ 361 (365)
|+.+-.+
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9875443
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.03 E-value=8.8e-10 Score=96.96 Aligned_cols=77 Identities=26% Similarity=0.518 Sum_probs=72.0
Q ss_pred eEEEeCCCCcCcHHHHHH----HHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 281 RIYVGNLPWEVDNARLEQ----VFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~----~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
||||.||+..+..++|++ +|+.||.|..|... .+.+.+|-|||.|.+.+.|-.|+++|+|..+.|+.++|+||
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 999999999999999888 99999999999887 35677999999999999999999999999999999999999
Q ss_pred cccc
Q 017842 357 EDRQ 360 (365)
Q Consensus 357 ~~~~ 360 (365)
+.+.
T Consensus 88 ~s~s 91 (221)
T KOG4206|consen 88 KSDS 91 (221)
T ss_pred cCcc
Confidence 9765
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.98 E-value=2.2e-09 Score=75.52 Aligned_cols=56 Identities=39% Similarity=0.643 Sum_probs=47.8
Q ss_pred HHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHHHHHHHHccCcccCe
Q 017842 176 LAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGR 255 (365)
Q Consensus 176 L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~~Al~~lng~~~~gr 255 (365)
|+++|++||.|..+.+ ..+. +++|||+|.+.++|.+|+..|||..+.|+
T Consensus 1 L~~~f~~fG~V~~i~~--------------------------~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKI--------------------------FKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHHTTTS-EEEEEE--------------------------ETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred ChHHhCCcccEEEEEE--------------------------EeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 6889999999988763 2111 69999999999999999999999999999
Q ss_pred eEEEeec
Q 017842 256 LLTVNKA 262 (365)
Q Consensus 256 ~l~V~~a 262 (365)
.|+|.++
T Consensus 50 ~l~V~~a 56 (56)
T PF13893_consen 50 PLKVSYA 56 (56)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999874
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=2.9e-09 Score=78.62 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=53.3
Q ss_pred HHHHHHHHH----ccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCC--CCccceEEEEeCCHHHHHHHHHH
Q 017842 173 SEKLAMLFE----KAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRET--DRSRGFGFVTMSTVEEAEKAVEM 246 (365)
Q Consensus 173 ~~~L~~~F~----~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~afV~f~~~e~a~~Al~~ 246 (365)
+++|+++|+ .||.|..+.. ++.+..+ ++++|||||.|.+.++|.+|+..
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~-------------------------v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~ 56 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINK-------------------------IYIDNVGYENHKRGNVYITFERSEDAARAIVD 56 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEE-------------------------EEeCCCCCCCCCcEEEEEEECCHHHHHHHHHH
Confidence 467888888 9999988741 4445545 88999999999999999999999
Q ss_pred HccCcccCeeEEE
Q 017842 247 FHRYDIDGRLLTV 259 (365)
Q Consensus 247 lng~~~~gr~l~V 259 (365)
|||..+.|+.|++
T Consensus 57 l~g~~~~gr~l~~ 69 (70)
T smart00361 57 LNGRYFDGRTVKA 69 (70)
T ss_pred hCCCEECCEEEEe
Confidence 9999999999986
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.1e-09 Score=112.22 Aligned_cols=163 Identities=20% Similarity=0.279 Sum_probs=134.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....+|||+|||+..+++.+|+..|..+|.|..|.|.. +..+...-||||.|-
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKt---------------------------P~~~~esa~~f~~~~ 421 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKT---------------------------PHIKTESAYAFVSLL 421 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhcccccccccc---------------------------CCCCcccchhhhhhh
Confidence 44678999999999999999999999999999987542 235566789999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR 315 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~ 315 (365)
+...+-.|+..+.+..|....+++.+-.+ ...+.+.++|++|+.++....|.+.|..||.|..|.+-
T Consensus 422 n~dmtp~ak~e~s~~~I~~g~~r~glG~~----------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~--- 488 (975)
T KOG0112|consen 422 NTDMTPSAKFEESGPLIGNGTHRIGLGQP----------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR--- 488 (975)
T ss_pred ccccCcccchhhcCCccccCccccccccc----------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---
Confidence 99999999988888777665555544332 12234589999999999999999999999999997664
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--eeEEEEEcccccc
Q 017842 316 ETGRSRGFGFVTMSSETELNDAIAALDGQNLDG--RAIRVNVAEDRQR 361 (365)
Q Consensus 316 ~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g--r~l~V~~a~~~~~ 361 (365)
++.-||||+|.+...+..|+..|-|..|+| ++|+|.||..-.+
T Consensus 489 ---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 489 ---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ---cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 335699999999999999999999999976 6899999886543
No 110
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.90 E-value=1.2e-09 Score=97.26 Aligned_cols=172 Identities=22% Similarity=0.365 Sum_probs=126.2
Q ss_pred CCCCeEEEcCCCCCCCHHH-H--HHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 157 PEDAKLFVGNLPYDVDSEK-L--AMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~-L--~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
+.-...|++|+-.++..+- | ...|+-|-...... ++.+ ..+.-+++||+.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk--------------------------~v~~-~p~~~~~~~~~~ 146 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTK--------------------------LVRD-RPQPIRPEAFES 146 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhh--------------------------hhhc-CCCccCcccccC
Confidence 3455677888877776554 2 45555544332221 2222 355668999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEe
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVY 313 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~ 313 (365)
|....+..++-..-++..+.-+.++......-... ........-.+||.|.|-.+++.+-|-+.|.+|-.....++++
T Consensus 147 ~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP--sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviR 224 (290)
T KOG0226|consen 147 FKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP--SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR 224 (290)
T ss_pred cchhhhhhhhccccccccccCcceeeccccccCCc--ccccCccccceeecccccccccHHHHHHHHHhccchhhccccc
Confidence 98888777776655666666666555433222111 1122334456999999999999999999999999999999999
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 314 DRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 314 d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
|+.||+++|||||.|.+..++..|++.|+|+.++.|.|.++-+.
T Consensus 225 dkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 225 DKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 99999999999999999999999999999999999988876543
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.90 E-value=2.9e-08 Score=92.81 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=129.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+...-.|.|++|-..+++.+|.+.++.||+|..+.. ...+..|.|+|
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~--------------------------------~P~~r~alvef 74 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC--------------------------------MPHKRQALVEF 74 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe--------------------------------ccccceeeeee
Confidence 4556778999999999999999999999999977652 23456799999
Q ss_pred CCHHHHHHHHHHH--ccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceE--EEeCCCCcCcHHHHHHHHhccCCeEEEE
Q 017842 235 STVEEAEKAVEMF--HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRI--YVGNLPWEVDNARLEQVFSEHGKVVNAR 310 (365)
Q Consensus 235 ~~~e~a~~Al~~l--ng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~l--fV~nLp~~~tee~L~~~F~~~G~V~~v~ 310 (365)
.+.+.|+.++... +...+.|+.--++++.......... ....++..| -|-|--+.+|-+-|..++..+|.|..|.
T Consensus 75 edi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~-es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIv 153 (494)
T KOG1456|consen 75 EDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGD-ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIV 153 (494)
T ss_pred ccccchhhheehhccCcccccCchhhcccchhhhhccCCC-CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEE
Confidence 9999999988654 3455688888888875544332221 112222233 3556668899999999999999999998
Q ss_pred EEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc--CCeeEEEEEcccc
Q 017842 311 VVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL--DGRAIRVNVAEDR 359 (365)
Q Consensus 311 i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l--~gr~l~V~~a~~~ 359 (365)
|.+. + .--|.|+|.+.+.|.+|..+|||-.| +.+.|.|.||++-
T Consensus 154 Ifkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 154 IFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred EEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 8755 2 22599999999999999999999977 4579999999864
No 112
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.89 E-value=7.1e-09 Score=89.95 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=74.2
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhcc-CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEH-GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~-G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
...++|+.+|+.+.+.++..+|..+ |.|..+|+-|++.||.++|||||+|.+.+.|.-|-..||+.-|.|+-|.|.|-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3489999999999999999999998 678888888999999999999999999999999999999999999999998865
Q ss_pred c
Q 017842 358 D 358 (365)
Q Consensus 358 ~ 358 (365)
+
T Consensus 129 p 129 (214)
T KOG4208|consen 129 P 129 (214)
T ss_pred c
Confidence 4
No 113
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1e-09 Score=101.76 Aligned_cols=86 Identities=27% Similarity=0.377 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
..++...|||-.|.+-++.++|.-+|+.||+|.+|. ++++..+|-+..||||+|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sce--------------------------VIRD~ktgdsLqyaFiEF 288 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCE--------------------------VIRDRKTGDSLQYAFIEF 288 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeee--------------------------EEecccccchhheeeeee
Confidence 345678999999999999999999999999999998 999999999999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
.+.+++.+|.-+|++..|+++.|.|+.+.+-.
T Consensus 289 en~escE~AyFKMdNvLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 289 ENKESCEQAYFKMDNVLIDDRRIHVDFSQSVS 320 (479)
T ss_pred cchhhHHHHHhhhcceeeccceEEeehhhhhh
Confidence 99999999999999999999999998775443
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.87 E-value=5.2e-09 Score=105.72 Aligned_cols=110 Identities=25% Similarity=0.397 Sum_probs=90.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..+|||||+|+..+++.+|.++|+.||.|.+|.+. .++|+|||.+.+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li--------------------------------~~R~cAfI~M~~R 467 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI--------------------------------PPRGCAFIKMVRR 467 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec--------------------------------cCCceeEEEEeeh
Confidence 57899999999999999999999999999998632 5799999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhc
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE 302 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~ 302 (365)
.+|.+|+.+|+.+.+.++.|+|.|+..+..+..-..-+.. .+=|.-|||.--..+|..++..
T Consensus 468 qdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k~~wD~---~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 468 QDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYKDYWDV---ELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred hHHHHHHHHHhcccccceeeEEeeeccCCcchhhhhhhhc---ccCeeEeehHhcCHHHHHhhhh
Confidence 9999999999999999999999999988876522211111 3456667887555558877764
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.87 E-value=1.6e-07 Score=88.05 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=130.7
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYD-VDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
+...++|-+|... ++-+.|.++|-.||.|..|++. + .-.|.|.|++.+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFm--------------------------k-----Tk~gtamVemgd 334 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFM--------------------------K-----TKPGTAMVEMGD 334 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEe--------------------------e-----cccceeEEEcCc
Confidence 4668999999876 4778899999999999988743 1 225789999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC---------------------C--------CCCCCcCCCCceEEEeCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ---------------------P--------ERAPRVFEPGFRIYVGNL 287 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~---------------------~--------~~~~~~~~~~~~lfV~nL 287 (365)
..++++|+..||+..+.|..|.|..++..... . ....+...|.++|..-|.
T Consensus 335 ~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNa 414 (494)
T KOG1456|consen 335 AYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNA 414 (494)
T ss_pred HHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecC
Confidence 99999999999999999999999766533211 0 112334567789999999
Q ss_pred CCcCcHHHHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe----eEEEEEccccc
Q 017842 288 PWEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR----AIRVNVAEDRQ 360 (365)
Q Consensus 288 p~~~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr----~l~V~~a~~~~ 360 (365)
|..+||+.|..+|...+ ....|+|..-+ +-+ .-.|.++|.+..+|..||..||...+.+. +..+.||-+-+
T Consensus 415 P~~vtEe~l~~i~nek~v~~~svkvFp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 415 PLGVTEEQLIGICNEKDVPPTSVKVFPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred CCccCHHHHHHHhhhcCCCcceEEeeccc-ccc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 99999999999998875 45667776554 222 23578999999999999999999988553 45555554433
No 116
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.85 E-value=9.8e-09 Score=100.42 Aligned_cols=87 Identities=36% Similarity=0.505 Sum_probs=78.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEE
Q 017842 153 FVEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232 (365)
Q Consensus 153 ~~~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 232 (365)
.....-.+.+||.+|...+...+|+++|++||+|.-+. ++++..+...++||||
T Consensus 399 kgrs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAK--------------------------VVTNaRsPGaRCYGfV 452 (940)
T KOG4661|consen 399 KGRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAK--------------------------VVTNARSPGARCYGFV 452 (940)
T ss_pred ccccccccceeeeccccchhhhHHHHHHHHhcceecee--------------------------eeecCCCCCcceeEEE
Confidence 33455678999999999999999999999999998777 8888888889999999
Q ss_pred EeCCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 233 ~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
++.+.+.|.+||..|+.+.++|+.|.|..++..
T Consensus 453 TMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 453 TMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred EecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 999999999999999999999999999887654
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.84 E-value=7.2e-09 Score=104.73 Aligned_cols=80 Identities=21% Similarity=0.434 Sum_probs=73.4
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..+|||||+|+..+++.+|..+|+.||.|.+|.+.. ++|+|||.+...++|.+|+.+|++..+.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 356999999999999999999999999999998864 38999999999999999999999999999999999998
Q ss_pred ccccCC
Q 017842 358 DRQRRS 363 (365)
Q Consensus 358 ~~~~~~ 363 (365)
.+.-++
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 776443
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=87.94 Aligned_cols=85 Identities=25% Similarity=0.392 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHcc-CCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKA-GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~-G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
.......++|+.+|....+..+..+|.++ |.+..++ +-+++.||.++|||||+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r--------------------------lsRnkrTGNSKgYAFVE 98 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR--------------------------LSRNKRTGNSKGYAFVE 98 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEE--------------------------eecccccCCcCceEEEE
Confidence 33456689999999999999999999988 6776655 66888999999999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
|.+++.|.-|.+.||++.|.|+.|.|....+.
T Consensus 99 FEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 99 FESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred eccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 99999999999999999999999999876554
No 119
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.82 E-value=3.1e-09 Score=99.97 Aligned_cols=82 Identities=34% Similarity=0.669 Sum_probs=76.2
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..++|||++|+|.++++.|+.+|..||.|..|.+.+|+.+++++||+||+|.+..++.++|. ..-+.|.||.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 34589999999999999999999999999999999999999999999999999999999988 57788999999999888
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 765
No 120
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=6.3e-09 Score=93.31 Aligned_cols=88 Identities=28% Similarity=0.512 Sum_probs=80.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 154 ~~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
.+-++.+.|||-+||......+|...|-.||.|.+.+ +..|+.|+.+++||||.
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaK--------------------------VFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAK--------------------------VFVDRATNQSKCFGFVS 333 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeee--------------------------eeehhccccccceeeEe
Confidence 3456789999999999999999999999999998887 88899999999999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
|.++.+++.||..+||..|+=+.|+|....++..
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999988776653
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=4e-08 Score=91.28 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=66.5
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh-CCCccCCeeEEEEEccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL-DGQNLDGRAIRVNVAED 358 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l-~~~~l~gr~l~V~~a~~ 358 (365)
.+|||+||-..+++.+|+.+|-.||.|.++++... +|.|||+|.+..+|..|...+ +...++|++|.|.|..+
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 49999999889999999999999999999999855 679999999999999998855 55578999999999988
No 122
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.71 E-value=1.4e-07 Score=73.62 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=72.3
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhcc--CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC----CeeEEE
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEH--GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD----GRAIRV 353 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~--G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~----gr~l~V 353 (365)
+||.|+|+|...|.++|.+++... |....+.++.|..++.+.|||||-|.+.+.|.+....++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 599999999999999999999764 78889999999999999999999999999999999999999884 567788
Q ss_pred EEccccc
Q 017842 354 NVAEDRQ 360 (365)
Q Consensus 354 ~~a~~~~ 360 (365)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887543
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.68 E-value=1.1e-07 Score=89.21 Aligned_cols=166 Identities=19% Similarity=0.293 Sum_probs=120.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+...|-.++|||..+..++..+|.-.....-.+ ++.....|+..|.|.|.|.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~--------------------------aKOG~~qgrRnge~lvrf~d~ 112 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGR--------------------------ALCLNAQGRRNGEALVRFVDP 112 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccce--------------------------eeeehhhhccccceEEEecCc
Confidence 345678899999999999999997542221111 444556778899999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCC-----CCCCCCcC---CCCceEEEeCCCCcCcHHHHHHHHhcc----CC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ-----PERAPRVF---EPGFRIYVGNLPWEVDNARLEQVFSEH----GK 305 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~-----~~~~~~~~---~~~~~lfV~nLp~~~tee~L~~~F~~~----G~ 305 (365)
+.-.-|++. +...+.+|.|.|-.+....-- ........ ..--.|..++|||++++.++..+|... |.
T Consensus 113 e~RdlalkR-hkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g 191 (508)
T KOG1365|consen 113 EGRDLALKR-HKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGG 191 (508)
T ss_pred hhhhhhhHh-hhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCC
Confidence 999999998 888899999999776543210 00001111 112367889999999999999999643 35
Q ss_pred eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 306 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 306 V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
++.|-+++. ..|+..|=|||.|....+|..||.. |...|+-|.|.
T Consensus 192 ~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 192 TEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred ccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 666666654 3589999999999999999999983 65566555443
No 124
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.65 E-value=5.2e-07 Score=87.55 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=123.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
....|-+++||+.||+++|.+||+-.-.+.... .......++..|-|||.|.+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi--------------------------~l~~d~rgR~tGEAfVqF~sq 155 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGI--------------------------LLPMDQRGRPTGEAFVQFESQ 155 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccce--------------------------eeeccCCCCcccceEEEecCH
Confidence 466899999999999999999998754433311 233345678999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC-------------------C----CC-------------------------
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG-------------------T----QP------------------------- 269 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~-------------------~----~~------------------------- 269 (365)
+.|++|+.. +...|+.|-|.|..+.... . +.
T Consensus 156 e~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~ 234 (510)
T KOG4211|consen 156 ESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYY 234 (510)
T ss_pred HHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcc
Confidence 999999998 8888999999885442100 0 00
Q ss_pred -----------------------CCC----CC---------c-CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEE
Q 017842 270 -----------------------ERA----PR---------V-FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVV 312 (365)
Q Consensus 270 -----------------------~~~----~~---------~-~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~ 312 (365)
... +. . ...+..+..++||+..++.++..+|+.. ....|.|-
T Consensus 235 g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ 313 (510)
T KOG4211|consen 235 GFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIE 313 (510)
T ss_pred ccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEE
Confidence 000 00 0 0112478889999999999999999876 33466665
Q ss_pred eeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 313 YDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 313 ~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
.. .+|+..|=|+|+|.+.++|..|+. -++..+..|-|.+-
T Consensus 314 ig-~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElF 353 (510)
T KOG4211|consen 314 IG-PDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELF 353 (510)
T ss_pred eC-CCCccCCcceeecccchhhHhhhc-cCCcccCcceeeec
Confidence 55 468889999999999999999998 47778877766654
No 125
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=82.48 Aligned_cols=83 Identities=19% Similarity=0.358 Sum_probs=71.4
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCcc---CCeeEEEEE
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE-TGRSRGFGFVTMSSETELNDAIAALDGQNL---DGRAIRVNV 355 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~-~~~~kG~afV~F~s~~~a~~Al~~l~~~~l---~gr~l~V~~ 355 (365)
+||||.+||.++...+|..+|..|-.-+.+.+..... .+.++-+|||.|.+.+.|..|+..|||..| .+..|+|.+
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 5999999999999999999999997777776654432 345568999999999999999999999998 488999999
Q ss_pred ccccccC
Q 017842 356 AEDRQRR 362 (365)
Q Consensus 356 a~~~~~~ 362 (365)
|++.+|.
T Consensus 115 AKSNtK~ 121 (284)
T KOG1457|consen 115 AKSNTKR 121 (284)
T ss_pred hhcCccc
Confidence 9987764
No 126
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=2.8e-07 Score=83.65 Aligned_cols=80 Identities=31% Similarity=0.587 Sum_probs=73.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
++|+|.|||+.++.++|+++|..||.+..+-+.+++ .|++.|.|-|.|...++|.+|++.|+|..++|+.+.+....+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 589999999999999999999999999999999885 5889999999999999999999999999999999999876644
Q ss_pred c
Q 017842 360 Q 360 (365)
Q Consensus 360 ~ 360 (365)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 127
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.54 E-value=1.1e-07 Score=86.24 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=74.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
..+||+|+.+.+|.+.+..+|+.||.|..|.|+.|+..+.++|||||.|.+...+..|+. |+|..|.|+.|.|.+..-
T Consensus 102 ~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 102 PSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred ceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 389999999999999999999999999999999999999999999999999999999999 999999999999988653
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.52 E-value=2.6e-07 Score=90.67 Aligned_cols=82 Identities=35% Similarity=0.551 Sum_probs=75.6
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
+..|+|.+|...+...+|+.+|++||.|+...|+.+..+.-.+.||||++.+..+|.+||..||...|.||-|.|..+++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 45899999999999999999999999999999998876666688999999999999999999999999999999999886
Q ss_pred cc
Q 017842 359 RQ 360 (365)
Q Consensus 359 ~~ 360 (365)
-+
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=4.1e-07 Score=84.68 Aligned_cols=78 Identities=28% Similarity=0.434 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+..-.|||||||...+++.+|+++|-+||.|..+++. ..++.|||.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~--------------------------------~~~~CAFv~ft 272 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL--------------------------------PRKGCAFVTFT 272 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee--------------------------------cccccceeeeh
Confidence 3456799999999999999999999999999998742 33669999999
Q ss_pred CHHHHHHHHHH-HccCcccCeeEEEeecCCC
Q 017842 236 TVEEAEKAVEM-FHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 236 ~~e~a~~Al~~-lng~~~~gr~l~V~~a~~~ 265 (365)
+.++|+.|... +|...|+|+.|.|.|..+.
T Consensus 273 TR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 273 TREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred hhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 99999988755 5678889999999999883
No 130
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.47 E-value=1.7e-07 Score=85.02 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.....+.|||||+.+.+|.+++..+|+.||.|..+. +.++...+.++|||||+|
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~t--------------------------i~~d~~~~~~k~~~yvef 150 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVT--------------------------VPKDKFRGHPKGFAYVEF 150 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCcccee--------------------------eeccccCCCcceeEEEec
Confidence 344678999999999999999999999999998877 788888889999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
.+.+.+..|+. |+|..|.|+.|.|.+....
T Consensus 151 ~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 151 SSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred ccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 99999999999 6999999999999876654
No 131
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.47 E-value=3.5e-07 Score=89.38 Aligned_cols=79 Identities=29% Similarity=0.535 Sum_probs=68.1
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
..+|||+|||++++..+|+++|..||.|+..+|....-.++...||||+|.+..++..||.+ +-..++||+|.|.--+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34699999999999999999999999999999987654455559999999999999999994 67788999999975443
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.43 E-value=7.1e-07 Score=87.25 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...+|||+|||.+++...|+++|..||.|....|.. .. ..+...+||||+|.+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v------------------------r~--~~~~~~~fgFV~f~~~ 340 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV------------------------RS--PGGKNPCFGFVEFENA 340 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEE------------------------ec--cCCCcCceEEEEEeec
Confidence 345699999999999999999999999999888642 22 2234449999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+++..||.+ +-..++||.|.|..-.+.
T Consensus 341 ~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 341 AAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred chhhhhhhc-CccccCCeeEEEEecccc
Confidence 999999998 788999999999765543
No 133
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.42 E-value=8.4e-07 Score=82.59 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=71.0
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeE--------EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCee
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVV--------NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 350 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~--------~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~ 350 (365)
++.|||.|||..+|-+++.++|++||.|. .|.+.++.. |..+|=|++.|.-.+++.-|++.|++..|.|++
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 34699999999999999999999999654 367777754 999999999999999999999999999999999
Q ss_pred EEEEEccc
Q 017842 351 IRVNVAED 358 (365)
Q Consensus 351 l~V~~a~~ 358 (365)
|+|+.|+=
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999873
No 134
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=3.4e-07 Score=81.43 Aligned_cols=71 Identities=34% Similarity=0.689 Sum_probs=67.0
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
.+|||+||+.+.+.+|..+|..||.+..|.+. .||+||.|.+..+|..|+.-||+..|.|-++.|.|+...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 79999999999999999999999999999886 679999999999999999999999999988999999854
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.36 E-value=1.8e-06 Score=78.38 Aligned_cols=82 Identities=29% Similarity=0.477 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
..+|+|.|||+.++..+|+++|..||.+..+. +-++ ..|++.|.|-|.|...+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~--------------------------vhy~-~~G~s~Gta~v~~~r~~ 135 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVA--------------------------VHYD-RAGRSLGTADVSFNRRD 135 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEe--------------------------eccC-CCCCCCccceeeecchH
Confidence 46899999999999999999999999777765 3333 47889999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+|..|++.++|+.++|+.+.+....+...
T Consensus 136 DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 136 DAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred hHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 99999999999999999999987765543
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=6.3e-07 Score=88.21 Aligned_cols=71 Identities=27% Similarity=0.405 Sum_probs=64.5
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
-+..+|+|-|||..++.++|+++|+.||+|..|+.-+. .+|.+||+|.+..+|.+|++.|++..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34459999999999999999999999999999876544 489999999999999999999999999999887
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.32 E-value=3.4e-06 Score=63.11 Aligned_cols=68 Identities=26% Similarity=0.422 Sum_probs=48.3
Q ss_pred ceEEEeCCCCcCcHH----HHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 280 FRIYVGNLPWEVDNA----RLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 280 ~~lfV~nLp~~~tee----~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
+.|+|.|||...+.. .|++++..+| .|..| . .|-|+|.|.+.+.|.+|.+.|+|....|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 379999999988764 5677777886 56665 1 4679999999999999999999999999999999
Q ss_pred Ecc
Q 017842 355 VAE 357 (365)
Q Consensus 355 ~a~ 357 (365)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=1.4e-06 Score=85.81 Aligned_cols=158 Identities=22% Similarity=0.269 Sum_probs=109.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|+|-|||..++..+|+.+|+.||.|..++ .+-..+|..||+|-+.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-------------------------------~t~~~~~~~~v~FyDv 122 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-------------------------------ETPNKRGIVFVEFYDV 122 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-------------------------------cccccCceEEEEEeeh
Confidence 578999999999999999999999999998865 3556789999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC------------------CCCcCCCCceEEEeCCCCcCcHHHHHHH
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER------------------APRVFEPGFRIYVGNLPWEVDNARLEQV 299 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~------------------~~~~~~~~~~lfV~nLp~~~tee~L~~~ 299 (365)
.+|++|++.|++..|.|+.|.. +....... .+...-+...+|. .|+......-++.+
T Consensus 123 R~A~~Alk~l~~~~~~~~~~k~----~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~ 197 (549)
T KOG4660|consen 123 RDAERALKALNRREIAGKRIKR----PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHI 197 (549)
T ss_pred HhHHHHHHHHHHHHhhhhhhcC----CCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcc
Confidence 9999999999999999999982 22211110 0000011123333 38888888777788
Q ss_pred HhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 300 FSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 300 F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
+.-+|.+.. +-. +.-+---|+.|.+..++..++... |..+.+....++++.+
T Consensus 198 ~~~~~~~~~-~~~-----~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 198 SSVDGSSPG-RET-----PLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhccCcccc-ccc-----cchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 888887766 322 111224567777777775555533 5666666666666544
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.28 E-value=2.5e-07 Score=87.22 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=124.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
..|.|.||.+.++.++++.+|.-.|+|..+.+. ++ +.+-...-....|||-|.+...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrly-----p~------------------~~d~~~pv~sRtcyVkf~d~~s 64 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLY-----PN------------------VDDSKIPVISRTCYVKFLDSQS 64 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccccccc-----CC------------------CCCccCcceeeeEEEeccCCcc
Confidence 489999999999999999999999999987743 10 1111222345679999999988
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCCCCC----------C----------------------CCCC--cC---------
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRGTQP----------E----------------------RAPR--VF--------- 276 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~~~~----------~----------------------~~~~--~~--------- 276 (365)
+..|- .|.+++|-|+.|.|..+....... . ..+. ..
T Consensus 65 v~vaQ-hLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~ 143 (479)
T KOG4676|consen 65 VTVAQ-HLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAA 143 (479)
T ss_pred eeHHh-hhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhh
Confidence 87654 458888888888886543221000 0 0000 00
Q ss_pred -----CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeE
Q 017842 277 -----EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 351 (365)
Q Consensus 277 -----~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l 351 (365)
.-..+++|++|+..+...++.+.|..+|.|.+.++.- +-..-+|.|.|....+...|+. ++|..+.-...
T Consensus 144 A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhs 218 (479)
T KOG4676|consen 144 AKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHS 218 (479)
T ss_pred hhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhh
Confidence 0124799999999999999999999999999998863 3335688899999999999999 78887765555
Q ss_pred EEEEcccccc
Q 017842 352 RVNVAEDRQR 361 (365)
Q Consensus 352 ~V~~a~~~~~ 361 (365)
++..-++..+
T Consensus 219 r~ai~kP~kK 228 (479)
T KOG4676|consen 219 RRAIIKPHKK 228 (479)
T ss_pred hhhhcCcccc
Confidence 5555554443
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.27 E-value=9.5e-08 Score=90.73 Aligned_cols=151 Identities=25% Similarity=0.406 Sum_probs=120.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
..+|+|||...++..+|..+|...- +.....--...|||||.+.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak--------------------------------~~~~g~fl~k~gyafvd~pdq~w 49 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK--------------------------------IPGSGQFLVKSGYAFVDCPDQQW 49 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc--------------------------------CCCCcceeeecceeeccCCchhh
Confidence 3689999999999999999996531 00000011247899999999999
Q ss_pred HHHHHHHHcc-CcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEE-eeCCC
Q 017842 240 AEKAVEMFHR-YDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVV-YDRET 317 (365)
Q Consensus 240 a~~Al~~lng-~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~-~d~~~ 317 (365)
|.+|++.++| ..+.|..+.|....++..+.. .+-|+|+|....++.|..+...||.|..|..+ .+..
T Consensus 50 a~kaie~~sgk~elqGkr~e~~~sv~kkqrsr----------k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e- 118 (584)
T KOG2193|consen 50 ANKAIETLSGKVELQGKRQEVEHSVPKKQRSR----------KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE- 118 (584)
T ss_pred hhhhHHhhchhhhhcCceeeccchhhHHHHhh----------hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH-
Confidence 9999999998 568999999998877654321 58899999999999999999999999999764 2322
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 318 GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 318 ~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
....-|+|.+.+.+..||..|+|..|....+.|.|-
T Consensus 119 ---tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 119 ---TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 233458899999999999999999998888888774
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.26 E-value=1.5e-06 Score=87.50 Aligned_cols=86 Identities=23% Similarity=0.362 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
.+..+.||||||++.++++.|...|..||+|..++|.|. ...-...+.+.+|||-|.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwp-----------------------RtEeEk~r~r~cgfvafm 227 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWP-----------------------RTEEEKRRERNCGFVAFM 227 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecc-----------------------cchhhhccccccceeeeh
Confidence 345678999999999999999999999999999987642 223345677889999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
+..+|.+|++.|+|..+.+..+++-|...
T Consensus 228 nR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 228 NRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred hhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 99999999999999999999999988743
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.25 E-value=1.5e-06 Score=77.80 Aligned_cols=84 Identities=25% Similarity=0.462 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+..+.+||+|-|..+++.+-|...|.+|-.-...+ ++++..+|+++||+||.|.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~ak--------------------------viRdkRTgKSkgygfVSf~ 240 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAK--------------------------VIRDKRTGKSKGYGFVSFR 240 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhcc--------------------------ccccccccccccceeeeec
Confidence 33577999999999999999999999986554444 8889999999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+..++..|+..++|.-++.|+|.+....-+
T Consensus 241 ~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 241 DPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred CHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 999999999999999999999998765443
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.21 E-value=1.3e-05 Score=62.60 Aligned_cols=79 Identities=14% Similarity=0.274 Sum_probs=62.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHcc--CCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKA--GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~--G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+||+|+|||...+.+.|.+++... |...-+. +..|..++.+.|||||-|.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~Y--------------------------LPiDf~~~~N~GYAFVNf~~~ 55 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFY--------------------------LPIDFKNKCNLGYAFVNFTSP 55 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEE--------------------------eeeeccCCCceEEEEEEcCCH
Confidence 689999999999999999999653 4433333 556677888999999999999
Q ss_pred HHHHHHHHHHccCccc----CeeEEEeecCC
Q 017842 238 EEAEKAVEMFHRYDID----GRLLTVNKAAP 264 (365)
Q Consensus 238 e~a~~Al~~lng~~~~----gr~l~V~~a~~ 264 (365)
+.|.+....++|..+. .+...|.+|.-
T Consensus 56 ~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAri 86 (97)
T PF04059_consen 56 QAAIRFYKAFNGKKWPNFNSKKVCEISYARI 86 (97)
T ss_pred HHHHHHHHHHcCCccccCCCCcEEEEehhHh
Confidence 9999999999998874 45555655543
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.20 E-value=3.8e-06 Score=84.64 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=74.1
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCC---CCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE---TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~---~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
.+..+.|||+||+..++++.|...|..||.|..|+|...+. ..+.+-+|||-|.+..+|.+|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34556899999999999999999999999999999975532 356677899999999999999999999999999999
Q ss_pred EEEcccc
Q 017842 353 VNVAEDR 359 (365)
Q Consensus 353 V~~a~~~ 359 (365)
+-|++.-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998643
No 145
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.16 E-value=8.2e-07 Score=77.81 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=68.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+|||+|+-..++++-|.++|-..|.|..|.|+.++. +..+ ||||.|.+..++.-|+..|||-.+.++.|.|.+-
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4899999999999999999999999999999987754 5556 9999999999999999999999999998888764
No 146
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.16 E-value=2.2e-06 Score=76.87 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
....||++|||+.+...-|+++|+.||.|-.|.+.-...+. .++ +.......+..-.-|+|+|.+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~-------~~~-------r~~~~~n~~~~y~EGWvEF~~K 138 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSK-------RAA-------RKRKGGNYKKLYSEGWVEFISK 138 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHH-------HHH-------HhhcCCCccccchhHHHHHHHH
Confidence 35689999999999999999999999999988754221110 000 0000001111222389999999
Q ss_pred HHHHHHHHHHccCcccCee
Q 017842 238 EEAEKAVEMFHRYDIDGRL 256 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~ 256 (365)
..|+++...|||..|+|+.
T Consensus 139 rvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 139 RVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHHhCCCccCCCC
Confidence 9999999999999999875
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.02 E-value=1.2e-05 Score=80.86 Aligned_cols=169 Identities=17% Similarity=0.083 Sum_probs=123.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+...+-+.+.+++....+++++|...- |.... +..+...+...|.+||.|...
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~--------------------------l~~~~v~~~~tG~~~v~f~~~ 362 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTD--------------------------LSENRVAPPQTGRKTVMFTPQ 362 (944)
T ss_pred hhheeeecccccccccchhhhhcCccc-ccccc--------------------------hhhhhcCCCcCCceEEEecCc
Confidence 345566789999999999999985321 22221 333434444588999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC--------CC-----------------------CCCCCcCCCCceEEEeC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT--------QP-----------------------ERAPRVFEPGFRIYVGN 286 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~--------~~-----------------------~~~~~~~~~~~~lfV~n 286 (365)
..+.+|+.. |...+-.|.+.|..+....- .. ...+....-+..|||..
T Consensus 363 ~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~ 441 (944)
T KOG4307|consen 363 APFQNAFTR-NPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQ 441 (944)
T ss_pred chHHHHHhc-CchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEecc
Confidence 999999998 88888888888854422110 00 00111223356999999
Q ss_pred CCCcCcHHHHHHHHhccCCeEE-EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 287 LPWEVDNARLEQVFSEHGKVVN-ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 287 Lp~~~tee~L~~~F~~~G~V~~-v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
||+.++...+-.+|...-.|+. |.|.+- -+++.++.|||.|....++..|+..-+.+.++-|.|+|.-
T Consensus 442 lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 442 LPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 9999999999999998878887 555554 4678899999999999999988886667777889999864
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.96 E-value=4.6e-05 Score=57.13 Aligned_cols=69 Identities=28% Similarity=0.366 Sum_probs=47.4
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHHccC-CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 160 AKLFVGNLPYDVDSEK----LAMLFEKAG-TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~----L~~~F~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
..|||.|||.+..... |+.++..|| .|..+ ..+.|+|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------------------------------------~~~tAilrF 46 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------------------------------------SGGTAILRF 46 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------------------------------------TT-EEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------------------------------------eCCEEEEEe
Confidence 4699999999997765 556667776 44332 257899999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
.+.+.|.+|.+.|+|..+.|+.|.|.+...
T Consensus 47 ~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 47 PNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp SSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred CCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 999999999999999999999999987743
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.88 E-value=6.2e-07 Score=92.01 Aligned_cols=163 Identities=18% Similarity=0.138 Sum_probs=121.3
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSE-KLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~-~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
..+...+.|+-+....+ ..+..|..+|.|+.+++. ..........++++++..
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p--------------------------~~g~k~h~q~~~~~~~s~ 623 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGP--------------------------KRGFKAHEQPQQQKVQSK 623 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCc--------------------------cccccccccchhhhhhcc
Confidence 34567777887777665 577888999999887742 101111122278899999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCc--CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEee
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV--FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 314 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~--~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d 314 (365)
..+++.|... .|.-+.++.+.|..+.+........... ...-.++||+||+..+.+.+|...|..+|.+..++|.-.
T Consensus 624 ~~~~esat~p-a~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h 702 (881)
T KOG0128|consen 624 HGSAESATVP-AGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIH 702 (881)
T ss_pred ccchhhcccc-cccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHH
Confidence 9999988876 8888899999998877666433222211 123358999999999999999999999999988888766
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 017842 315 RETGRSRGFGFVTMSSETELNDAIAALDGQNLDG 348 (365)
Q Consensus 315 ~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g 348 (365)
...++.+|+||+.|....++.+|+.. +...+.|
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g 735 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG 735 (881)
T ss_pred hhccccccceeeEeecCCchhhhhhh-hhhhhhh
Confidence 66789999999999999999999984 4433333
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.76 E-value=5.7e-05 Score=60.21 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=44.8
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC-----CccCCeeEEE
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG-----QNLDGRAIRV 353 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~-----~~l~gr~l~V 353 (365)
++.|+|.|++..++.++|+..|+.||.|.+|.+.+. -.-|||.|.+.+.|.+|+..+.. ..+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 357999999999999999999999999999988754 33699999999999999987743 3566666665
Q ss_pred EE
Q 017842 354 NV 355 (365)
Q Consensus 354 ~~ 355 (365)
+.
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.63 E-value=5.3e-05 Score=71.27 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=75.7
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeE--------EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCee
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVV--------NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 350 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~--------~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~ 350 (365)
..+|||-+||..++..+|..+|..+|.|. .|.|.++++|+++||-|.|.|.+..+|+.|+..++++.+.|.+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 34899999999999999999999998553 4677889999999999999999999999999999999999999
Q ss_pred EEEEEcccccc
Q 017842 351 IRVNVAEDRQR 361 (365)
Q Consensus 351 l~V~~a~~~~~ 361 (365)
|.|..|..++.
T Consensus 146 ikvs~a~~r~~ 156 (351)
T KOG1995|consen 146 IKVSLAERRTG 156 (351)
T ss_pred chhhhhhhccC
Confidence 99999987764
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.60 E-value=4.2e-05 Score=68.76 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=60.4
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC--------CCcce----EEEEEecCHHHHHHHHHHhCCCccCC
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET--------GRSRG----FGFVTMSSETELNDAIAALDGQNLDG 348 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~--------~~~kG----~afV~F~s~~~a~~Al~~l~~~~l~g 348 (365)
.||++|||+.+....|+++|+.||.|-.|.+.....+ |..++ -|+|+|.+...|..+...|||..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 8999999999999999999999999999999765443 22222 27999999999999999999999998
Q ss_pred ee
Q 017842 349 RA 350 (365)
Q Consensus 349 r~ 350 (365)
++
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 74
No 153
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00021 Score=70.80 Aligned_cols=77 Identities=31% Similarity=0.478 Sum_probs=63.4
Q ss_pred eEEEeCCCCcCc------HHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeeEEE
Q 017842 281 RIYVGNLPWEVD------NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRV 353 (365)
Q Consensus 281 ~lfV~nLp~~~t------ee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~-gr~l~V 353 (365)
.|+|.|+|---. ..-|..+|+++|.|..+.++.+.++| .+||.|++|.+..+|..|++.|||+.|+ .++..|
T Consensus 60 vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 60 VVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred EEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 899999985332 23477899999999999999887655 8999999999999999999999999885 566666
Q ss_pred EEccc
Q 017842 354 NVAED 358 (365)
Q Consensus 354 ~~a~~ 358 (365)
..-++
T Consensus 139 ~~f~d 143 (698)
T KOG2314|consen 139 RLFKD 143 (698)
T ss_pred ehhhh
Confidence 54433
No 154
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.51 E-value=0.0003 Score=71.17 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=65.7
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeE-EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVV-NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~-~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
+.|-+.|+||.++-++|.++|..|--+- +|++.+. +.|++.|-|.|-|.+.+.|..|...|+++.|..|+|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788999999999999999999996443 4545444 6799999999999999999999999999999999998865
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.49 E-value=0.00014 Score=68.57 Aligned_cols=91 Identities=23% Similarity=0.334 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
...+|||.+||..++...|..+|.+||.|..-+- -..++ +.+.+++.|+..+|-|.|.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~-----t~kPk-------------i~~y~dkeT~~~KGeatvS~~D~ 126 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKR-----TGKPK-------------IKIYTDKETGAPKGEATVSYEDP 126 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCC-----CCCcc-------------hhccccccccCcCCceeeeecCh
Confidence 4669999999999999999999999998754220 00112 22788889999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
-.|+.|+..+++..|.|..|+|..+..+.
T Consensus 127 ~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 127 PAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 99999999999999999999998776554
No 156
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.00049 Score=62.07 Aligned_cols=99 Identities=27% Similarity=0.299 Sum_probs=81.4
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCC
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR 319 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~ 319 (365)
|..|...|++....|+.|+|.++.+. .|+|.||...+..+.|.+-|+.||.|....++-| ..++
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~a---------------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k 70 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMHA---------------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGK 70 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeeccc---------------eEEEEecchhhhhHHHHHhhhhcCccchheeeec-cccc
Confidence 55566778999999999999998762 7999999999999999999999999998776666 3477
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCC----ccCCeeEEEE
Q 017842 320 SRGFGFVTMSSETELNDAIAALDGQ----NLDGRAIRVN 354 (365)
Q Consensus 320 ~kG~afV~F~s~~~a~~Al~~l~~~----~l~gr~l~V~ 354 (365)
+.|-++|.|.....+.+|+..++.. ...+++.-|.
T Consensus 71 ~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 71 PTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 8888999999999999999977433 3345555544
No 157
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.36 E-value=0.00013 Score=68.65 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=72.0
Q ss_pred CCeEE-EcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 159 DAKLF-VGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 159 ~~tvf-VgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++| |+||+++++.++|+.+|..+|.|..++ +..+..++..+|||||.|.+.
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r--------------------------~~~~~~s~~~kg~a~~~~~~~ 237 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVR--------------------------LPTDEESGDSKGFAYVDFSAG 237 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeec--------------------------cCCCCCccchhhhhhhhhhhc
Confidence 34555 999999999999999999999998887 666778999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
..+..++.. +...+.|+.+.+....+...
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 238 NSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 999999887 88899999999988776643
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.33 E-value=0.00053 Score=63.99 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=58.6
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCC---CCccc-
Q 017842 159 DAKLFVGNLPYDVDSEK----L--AMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRET---DRSRG- 228 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~----L--~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g- 228 (365)
..-|||-+||+.+..++ | .++|.+||.|..|.+. +.+ +...+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvN----------------------------kkt~s~nst~~h 165 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVN----------------------------KKTSSLNSTASH 165 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEec----------------------------cccccccccccc
Confidence 34699999999886665 2 3789999999776432 211 11122
Q ss_pred e-EEEEeCCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 229 F-GFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 229 ~-afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
+ .||.|.+.++|.+||...+|..++||.|+..+-.
T Consensus 166 ~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 166 AGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred ceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 2 3999999999999999999999999999997654
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.24 E-value=0.00039 Score=65.07 Aligned_cols=74 Identities=23% Similarity=0.561 Sum_probs=65.9
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccC--CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHG--KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G--~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
.++|||||-|.+|+++|.+.+...| .+..+++..++.+|.+||||+|...+..++.+.+..|--+.|.|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4899999999999999999998877 6777888888888999999999999999999999999888998874444
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.23 E-value=0.00082 Score=62.75 Aligned_cols=78 Identities=24% Similarity=0.413 Sum_probs=61.8
Q ss_pred ceEEEeCCCCcCcHHH----H--HHHHhccCCeEEEEEEeeCCC-CCcceE--EEEEecCHHHHHHHHHHhCCCccCCee
Q 017842 280 FRIYVGNLPWEVDNAR----L--EQVFSEHGKVVNARVVYDRET-GRSRGF--GFVTMSSETELNDAIAALDGQNLDGRA 350 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~----L--~~~F~~~G~V~~v~i~~d~~~-~~~kG~--afV~F~s~~~a~~Al~~l~~~~l~gr~ 350 (365)
+-+||-+||..+..++ | .++|..||.|..|.|-+...+ +...+. .||+|.+.++|.+||...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3688889988877766 2 479999999999987654311 222332 399999999999999999999999999
Q ss_pred EEEEEcc
Q 017842 351 IRVNVAE 357 (365)
Q Consensus 351 l~V~~a~ 357 (365)
|+..|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9999864
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.17 E-value=0.0015 Score=52.06 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=38.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
..|+|.+++..++.++|+..|..||.|..|.+. +....|||.|.+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~--------------------------------~G~~~g~VRf~~~~~ 49 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS--------------------------------RGDTEGYVRFKTPEA 49 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE----------------------------------TT-SEEEEEESS---
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec--------------------------------CCCCEEEEEECCcch
Confidence 468899999999999999999999988776531 345579999999999
Q ss_pred HHHHHHHHccC
Q 017842 240 AEKAVEMFHRY 250 (365)
Q Consensus 240 a~~Al~~lng~ 250 (365)
|++|+..+...
T Consensus 50 A~~a~~~~~~~ 60 (105)
T PF08777_consen 50 AQKALEKLKEA 60 (105)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 162
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.14 E-value=0.0025 Score=53.24 Aligned_cols=72 Identities=28% Similarity=0.400 Sum_probs=52.8
Q ss_pred CCCceEEEeCCC------CcCcH---HHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 017842 277 EPGFRIYVGNLP------WEVDN---ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 347 (365)
Q Consensus 277 ~~~~~lfV~nLp------~~~te---e~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~ 347 (365)
++--||.|.=+. ...++ .+|-+.|..||.|.-||++-+ --+|+|.+-++|.+|+. |+|..++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 333477665554 12222 367788899999999998843 48999999999999999 9999999
Q ss_pred CeeEEEEEcc
Q 017842 348 GRAIRVNVAE 357 (365)
Q Consensus 348 gr~l~V~~a~ 357 (365)
|+.|+|+.-.
T Consensus 96 g~~l~i~LKt 105 (146)
T PF08952_consen 96 GRTLKIRLKT 105 (146)
T ss_dssp TEEEEEEE--
T ss_pred CEEEEEEeCC
Confidence 9999998743
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.94 E-value=0.0025 Score=44.13 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=41.7
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHH
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAI 338 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al 338 (365)
+.|-|.|.+....+ .+..+|..||.|..+.+... .-+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 36889999876554 45558889999999988722 347999999999999986
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.88 E-value=0.00068 Score=63.52 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=64.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
..+|||||-|.+|.++|.+.+...|--..+.|+ ...++..|.++|||.|...+..+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmK------------------------FFENR~NGQSKG~AL~~~~SdAa 136 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMK------------------------FFENRTNGQSKGYALLVLNSDAA 136 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhh------------------------hhhcccCCcccceEEEEecchHH
Confidence 459999999999999999999887754333322 44566789999999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEee
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNK 261 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~ 261 (365)
+++.++.|-...|+|+.-.|..
T Consensus 137 ~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 137 VKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred HHHHHHhcccceecCCCCeeec
Confidence 9999999999999998877753
No 165
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0038 Score=61.63 Aligned_cols=63 Identities=30% Similarity=0.401 Sum_probs=56.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHH-ccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFE-KAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
+.+|||||+||--++..+|..+|. -||.|..+- |-+|..-+..+|-|=|.|.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaG--------------------------IDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVG--------------------------IDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEE--------------------------eccCcccCCCCCcceeeecc
Confidence 578999999999999999999998 599998876 66677778899999999999
Q ss_pred HHHHHHHHHH
Q 017842 237 VEEAEKAVEM 246 (365)
Q Consensus 237 ~e~a~~Al~~ 246 (365)
-.+-.+||.+
T Consensus 423 qqsYi~AIsa 432 (520)
T KOG0129|consen 423 QQAYIKAISA 432 (520)
T ss_pred cHHHHHHHhh
Confidence 9999999987
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.86 E-value=0.0025 Score=61.44 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=55.2
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEee---CCC--CCc--------ceEEEEEecCHHHHHHHHHHhCC
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD---RET--GRS--------RGFGFVTMSSETELNDAIAALDG 343 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d---~~~--~~~--------kG~afV~F~s~~~a~~Al~~l~~ 343 (365)
+.++|.+.|||-+-.-+.|.++|..+|.|..|||+.. +.. +.+ +-.|+|+|.....|.+|...|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 4569999999999889999999999999999999866 222 222 34589999999999999997744
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0043 Score=61.74 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCC--CH----HHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEE
Q 017842 158 EDAKLFVGNLPYDV--DS----EKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGF 231 (365)
Q Consensus 158 ~~~tvfVgnLp~~~--t~----~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~af 231 (365)
-+..|+|.|+|--- .- .-|..+|+++|+|.... +..+. .|..+||.|
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~--------------------------~P~~e-~ggtkG~lf 109 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMY--------------------------YPIDE-EGGTKGYLF 109 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhcccccee--------------------------eccCc-cCCeeeEEE
Confidence 46689999999643 22 34667899999987765 22233 445999999
Q ss_pred EEeCCHHHHHHHHHHHccCccc-CeeEEEee
Q 017842 232 VTMSTVEEAEKAVEMFHRYDID-GRLLTVNK 261 (365)
Q Consensus 232 V~f~~~e~a~~Al~~lng~~~~-gr~l~V~~ 261 (365)
++|++...|..|++.|||..|+ .|...|..
T Consensus 110 ~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 110 VEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred EEecChhhHHHHHHhcccceecccceEEeeh
Confidence 9999999999999999999985 45556643
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.77 E-value=0.0065 Score=47.82 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=52.7
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEE-EEeeC------CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-eE
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNAR-VVYDR------ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AI 351 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~-i~~d~------~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr-~l 351 (365)
+-|.|=|.|.. .-..|-++|+.||.|.... +.++. ..........|+|.+..+|.+||. .||..+.|. -+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 36888888877 5567778999999998775 11110 001235588999999999999999 799999885 56
Q ss_pred EEEEcccc
Q 017842 352 RVNVAEDR 359 (365)
Q Consensus 352 ~V~~a~~~ 359 (365)
-|.++++.
T Consensus 85 GV~~~~~~ 92 (100)
T PF05172_consen 85 GVKPCDPA 92 (100)
T ss_dssp EEEE-HHH
T ss_pred EEEEcHHh
Confidence 68888543
No 169
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.55 E-value=0.0022 Score=64.16 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=65.0
Q ss_pred CcCCCCceEEEeCCCCcCcHHHHHHHHh-ccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc---CCe
Q 017842 274 RVFEPGFRIYVGNLPWEVDNARLEQVFS-EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL---DGR 349 (365)
Q Consensus 274 ~~~~~~~~lfV~nLp~~~tee~L~~~F~-~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l---~gr 349 (365)
......+.|+|.||-..+|.-+|+.++. ..|.|+...| | +-|-.|||.|.+.++|.....+|||..+ +++
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3455667999999999999999999998 5567777733 3 2366899999999999999999999977 788
Q ss_pred eEEEEEcc
Q 017842 350 AIRVNVAE 357 (365)
Q Consensus 350 ~l~V~~a~ 357 (365)
.|.+.|+.
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 99999875
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.47 E-value=0.0091 Score=41.28 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=41.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
+.|-|.+.+.+..+. +..+|..||.|..+.+ .....+.||.|.+..+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~--------------------------------~~~~~~~~l~y~~~~~ 48 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYV--------------------------------PESTNWMYLKYKSRKD 48 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEc--------------------------------CCCCcEEEEEECCHHH
Confidence 568888888777755 5558889999987652 1346789999999999
Q ss_pred HHHHH
Q 017842 240 AEKAV 244 (365)
Q Consensus 240 a~~Al 244 (365)
|++|+
T Consensus 49 ae~Al 53 (53)
T PF14605_consen 49 AEKAL 53 (53)
T ss_pred HHhhC
Confidence 99885
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.43 E-value=0.0016 Score=58.87 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=51.6
Q ss_pred HHHHHHHh-ccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 294 ARLEQVFS-EHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 294 e~L~~~F~-~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
++|...|+ +||.|+.+.|..+. .-.-+|=+||.|...++|.+|+..|||..+.|++|...++-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44445555 89999999776553 34558889999999999999999999999999999988753
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.12 E-value=0.017 Score=53.21 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=52.7
Q ss_pred HHHHHHHHhccCCeEEEEEEeeCCCCCc-ceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 293 NARLEQVFSEHGKVVNARVVYDRETGRS-RGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 293 ee~L~~~F~~~G~V~~v~i~~d~~~~~~-kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++++-|++||.|..|.|.-.+..-.. .--.||+|....+|.+|+-.|||..|+||.++.-|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4578899999999999988766432211 2247999999999999999999999999999887654
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.01 E-value=0.0078 Score=58.15 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=55.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
-+.+||.+-|||.+-.-+.|.++|+.+|.|..|+|--.- .+...+ ..+......-..+-+|+|+|..
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPg-----aip~d~--------r~~~~~~~~~~tk~~AlvEye~ 295 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPG-----AIPEDV--------RGFPKKYFELQTKECALVEYEE 295 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCC-----CCCccc--------ccCCccchhhhhhhhhhhhhhh
Confidence 368899999999999999999999999999998842110 000000 0000000000125569999999
Q ss_pred HHHHHHHHHHHccC
Q 017842 237 VEEAEKAVEMFHRY 250 (365)
Q Consensus 237 ~e~a~~Al~~lng~ 250 (365)
.++|.+|.++++..
T Consensus 296 ~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 296 VEAARKARELLNPE 309 (484)
T ss_pred hHHHHHHHHhhchh
Confidence 99999999998643
No 174
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.98 E-value=0.013 Score=61.48 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....+.+|||+|+.++....|...|..||.|..|.++ +...||||.|.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~--------------------------------hgq~yayi~ye 499 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR--------------------------------HGQPYAYIQYE 499 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc--------------------------------cCCcceeeecc
Confidence 3456789999999999999999999999999876633 45679999999
Q ss_pred CHHHHHHHHHHHccCcccC--eeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDG--RLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~g--r~l~V~~a~~~~~~~ 269 (365)
+...++.|+..+-|..|+| +.|+|+++......+
T Consensus 500 s~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 500 SPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred cCccchhhHHHHhcCcCCCCCcccccccccCCCCCh
Confidence 9999999999999999965 789999987765443
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.98 E-value=0.0041 Score=56.30 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=50.6
Q ss_pred HHHHHHHH-ccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHHHHHHHHccCcc
Q 017842 174 EKLAMLFE-KAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI 252 (365)
Q Consensus 174 ~~L~~~F~-~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~~Al~~lng~~~ 252 (365)
++|...|. +||.|+.+. +.+...-.-.|.+||.|...++|++|+..|||..+
T Consensus 83 Ed~f~E~~~kygEiee~~---------------------------Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~ 135 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELN---------------------------VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWY 135 (260)
T ss_pred HHHHHHHHHHhhhhhhhh---------------------------hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccc
Confidence 45555565 899998864 22333456789999999999999999999999999
Q ss_pred cCeeEEEeecC
Q 017842 253 DGRLLTVNKAA 263 (365)
Q Consensus 253 ~gr~l~V~~a~ 263 (365)
.|++|....+.
T Consensus 136 ~G~pi~ae~~p 146 (260)
T KOG2202|consen 136 NGRPIHAELSP 146 (260)
T ss_pred cCCcceeeecC
Confidence 99999987664
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.97 E-value=0.023 Score=44.72 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=51.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.+.|.|=+.|.. ....+...|++||.|....-..+. .. -+..........+..|.|.++.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~---~~----------------~~~~~~~~~~~NWi~I~Y~~~~ 65 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRS---SS----------------GINPYPIPSGGNWIHITYDNPL 65 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-----------------------------E-CCTTEEEEEESSHH
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccccc---cc----------------ccccccCCCCCCEEEEECCCHH
Confidence 557888888888 556788999999998654300000 00 0000011234678999999999
Q ss_pred HHHHHHHHHccCcccCeeEE-Eeec
Q 017842 239 EAEKAVEMFHRYDIDGRLLT-VNKA 262 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~-V~~a 262 (365)
+|.+||.. ||..|.|..+- |.++
T Consensus 66 ~A~rAL~~-NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 66 SAQRALQK-NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp HHHHHHTT-TTEEETTCEEEEEEE-
T ss_pred HHHHHHHh-CCeEEcCcEEEEEEEc
Confidence 99999998 99999886554 5544
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.80 E-value=0.041 Score=55.32 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHc-cCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEK-AGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
....|+|.||---.|...|+.++.. +|.|... + ..+-+..|||.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-------------------------------mDkIKShCyV~yss 490 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-------------------------------MDKIKSHCYVSYSS 490 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-H-------------------------------HHHhhcceeEeccc
Confidence 4567999999999999999999985 6655543 1 11335679999999
Q ss_pred HHHHHHHHHHHccCcc---cCeeEEEeecC
Q 017842 237 VEEAEKAVEMFHRYDI---DGRLLTVNKAA 263 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~---~gr~l~V~~a~ 263 (365)
.+.|.....+|+|+.+ ++++|.+++..
T Consensus 491 ~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 491 VEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 9999999999999988 78899887663
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.74 E-value=0.012 Score=56.30 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=64.7
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeC---CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR---ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~---~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
.|-|.||...+|.++++.+|...|.|..+++.... .-......|||.|.+.+++..|-. |.+..+-|+.|.|..+-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 79999999999999999999999999999987532 224456689999999999999888 88888888888876554
Q ss_pred c
Q 017842 358 D 358 (365)
Q Consensus 358 ~ 358 (365)
.
T Consensus 88 ~ 88 (479)
T KOG4676|consen 88 D 88 (479)
T ss_pred C
Confidence 3
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.70 E-value=0.015 Score=50.79 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=51.4
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhc-cCCe---EEEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCCccC---C-
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSE-HGKV---VNARVVYDRET--GRSRGFGFVTMSSETELNDAIAALDGQNLD---G- 348 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~-~G~V---~~v~i~~d~~~--~~~kG~afV~F~s~~~a~~Al~~l~~~~l~---g- 348 (365)
++.|.|++||+.+|++++++.+.. ++.- .++.-...... ...-..|||.|.+.+++......++|+.|. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999997776 5554 34442222222 112345999999999999999999998773 2
Q ss_pred -eeEEEEEcc
Q 017842 349 -RAIRVNVAE 357 (365)
Q Consensus 349 -r~l~V~~a~ 357 (365)
.+..|.||-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 255566654
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.64 E-value=0.031 Score=46.82 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=50.8
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCcc
Q 017842 157 PEDAKLFVGNLPYD-----VDS----EKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSR 227 (365)
Q Consensus 157 ~~~~tvfVgnLp~~-----~t~----~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (365)
|++.||.|.=+... .-. .+|...|..||.+.-+|+ + .
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRf--------------------------v--------~ 70 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRF--------------------------V--------G 70 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEE--------------------------E--------T
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEE--------------------------e--------C
Confidence 45678777766521 122 367788999998866552 1 3
Q ss_pred ceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 228 GFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 228 g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
+.-+|+|.+-..|.+|+.+ +|..+.|+.|+|..-.+
T Consensus 71 ~~mwVTF~dg~sALaals~-dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALSL-DGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp TCEEEEESSCHHHHHHHHG-CCSEETTEEEEEEE---
T ss_pred CeEEEEECccHHHHHHHcc-CCcEECCEEEEEEeCCc
Confidence 4679999999999999997 99999999999986544
No 181
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.58 E-value=0.01 Score=57.21 Aligned_cols=76 Identities=28% Similarity=0.500 Sum_probs=60.6
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCC-ccCCeeEEEEEcccc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ-NLDGRAIRVNVAEDR 359 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~-~l~gr~l~V~~a~~~ 359 (365)
.+|++||...++..+|..+|...-.-.+-.++. -.||+||.+.+..-|.+|+..++|+ .+.|.++.|.+.-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 699999999999999999997652111111111 1689999999999999999999998 789999999988776
Q ss_pred ccC
Q 017842 360 QRR 362 (365)
Q Consensus 360 ~~~ 362 (365)
..+
T Consensus 77 kqr 79 (584)
T KOG2193|consen 77 KQR 79 (584)
T ss_pred HHH
Confidence 654
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.45 E-value=0.21 Score=40.04 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=51.3
Q ss_pred eEEEeCCCCcCcHHHHHHHHhcc-CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEH-GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 347 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~-G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~ 347 (365)
.+.+...|+.++-..|..+.+.+ ..|..+||++|.. .++-.++++|.+..+|..-...+||+.++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 55566667777777787666665 4788999998843 35667999999999999999999999885
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.03 E-value=0.13 Score=36.70 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=45.0
Q ss_pred eEEEeCCCCcCcHHHHHHHHhcc---CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEH---GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~---G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l 341 (365)
.|.|+|++ +++-++|+.+|..| .....|..+-|. .|=|.|.+...|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 79999997 58889999999998 246688888774 4889999999999999864
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.40 E-value=0.22 Score=41.40 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=55.1
Q ss_pred CCCceEEEeCCCCcCc----HHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 277 EPGFRIYVGNLPWEVD----NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~t----ee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
++..+|.|+=|..++. -..+-..++.||.|.+|... ++--|.|.|.+..+|-+|+.++.. ..-|.-+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 4456888876655543 34455666889999999765 245799999999999999998765 66788888
Q ss_pred EEEcc
Q 017842 353 VNVAE 357 (365)
Q Consensus 353 V~~a~ 357 (365)
++|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88743
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.79 E-value=0.2 Score=46.39 Aligned_cols=64 Identities=22% Similarity=0.098 Sum_probs=47.3
Q ss_pred HHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHHHHHHHHccCccc
Q 017842 174 EKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDID 253 (365)
Q Consensus 174 ~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~~Al~~lng~~~~ 253 (365)
.+++....+||.|..|.|..+. ...-.-.--.||+|...+.|.+|+-.|||..|+
T Consensus 301 de~keEceKyg~V~~viifeip-------------------------~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIP-------------------------SQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecC-------------------------CCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 4566778999999887643221 111112334799999999999999999999999
Q ss_pred CeeEEEeec
Q 017842 254 GRLLTVNKA 262 (365)
Q Consensus 254 gr~l~V~~a 262 (365)
||.++..+.
T Consensus 356 Gr~v~A~Fy 364 (378)
T KOG1996|consen 356 GRVVSACFY 364 (378)
T ss_pred ceeeeheec
Confidence 999887654
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.43 E-value=0.067 Score=46.72 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=43.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHc-cCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEK-AGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...+|-|++||+++|++++...+.. ++.... |..+.|. .-..........-|||.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~----w~y~~g~-----------------~~~~~~~~~~~SRaYi~F~~ 64 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD----WYYFQGK-----------------YGKKSFKPPTYSRAYINFKN 64 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE-------EEEEEE-----------------ES-SSSTTS--EEEEEEESS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccc----eEEEecC-----------------CCCccCCCCcceEEEEEeCC
Confidence 4568999999999999999887765 554411 1111110 11111111234569999999
Q ss_pred HHHHHHHHHHHccCcc
Q 017842 237 VEEAEKAVEMFHRYDI 252 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~ 252 (365)
.+++......++|..|
T Consensus 65 ~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 65 PEDLLEFRDRFDGHVF 80 (176)
T ss_dssp CHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHhcCCcEE
Confidence 9999999999999777
No 187
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.25 E-value=0.38 Score=44.78 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.+..|-|=+.|..... -|..+|.+||.|.... +++...+-+|.|.+.
T Consensus 196 ~D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv--------------------------------~~~ngNwMhirYssr 242 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHV--------------------------------TPSNGNWMHIRYSSR 242 (350)
T ss_pred ccceEEEeccCccchh-HHHHHHHhhCeeeeee--------------------------------cCCCCceEEEEecch
Confidence 3567888888887654 4778999999885543 446667899999999
Q ss_pred HHHHHHHHHHccCcccCee-EEEeecCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRL-LTVNKAAPR 265 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~-l~V~~a~~~ 265 (365)
-.|.+||.. ||..|+|.. |-|..+..+
T Consensus 243 ~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 243 THAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred hHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 999999998 999997754 455554443
No 188
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.11 E-value=0.095 Score=53.52 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=63.3
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
..++..++||+|+-..+..+-++.+...+|.|..+.... |||..|..+....+|+..|+-..++|.++.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345556999999999999999999999999998886542 89999999999999999999999999988776
Q ss_pred E
Q 017842 355 V 355 (365)
Q Consensus 355 ~ 355 (365)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 189
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.64 E-value=0.66 Score=34.25 Aligned_cols=59 Identities=19% Similarity=0.374 Sum_probs=36.3
Q ss_pred CcCcHHHHHHHHhccC-----CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 289 WEVDNARLEQVFSEHG-----KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 289 ~~~tee~L~~~F~~~G-----~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
..++..+|-.++...+ .|-.|+|..+ |+||+-... .|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567778877777664 5777877633 899998874 889999999999999999999875
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.24 E-value=0.29 Score=43.03 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=45.7
Q ss_pred cHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCeeEEEEEccc
Q 017842 292 DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD--GQNLDGRAIRVNVAED 358 (365)
Q Consensus 292 tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~--~~~l~gr~l~V~~a~~ 358 (365)
....|+.+|..|+.+.....++. =+-..|.|.+.+.|.+|...|+ +..+.|..|+|-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999888877744 3358999999999999999999 9999999999999853
No 191
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.04 E-value=0.013 Score=59.49 Aligned_cols=147 Identities=19% Similarity=0.271 Sum_probs=94.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
++..+|||||+.+.+...-++.....||-|.+.. + --|||..|..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k----------------------------------r-~~fgf~~f~~ 82 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWK----------------------------------R-DKFGFCEFLK 82 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhh----------------------------------h-hhhcccchhh
Confidence 3567999999999999999999999999886543 1 1199999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC-------CCCCCCcCCC---CceEEEeCCCCcCcHHHHHHHHhccCCe
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ-------PERAPRVFEP---GFRIYVGNLPWEVDNARLEQVFSEHGKV 306 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~-------~~~~~~~~~~---~~~lfV~nLp~~~tee~L~~~F~~~G~V 306 (365)
......|+..++-..++|..+.+..-...... .........+ .+-.+|+|+|..+........+.-.+..
T Consensus 83 ~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~ 162 (668)
T KOG2253|consen 83 HIGDLRASRLLTELNIDDQKLIENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSA 162 (668)
T ss_pred HHHHHHHHHHhcccCCCcchhhccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchh
Confidence 99999999999999999988887642111000 0000011111 3467889998888877777777655444
Q ss_pred EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHH
Q 017842 307 VNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339 (365)
Q Consensus 307 ~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~ 339 (365)
...+.+... .+...-++|-.|.+......++.
T Consensus 163 ~s~~~~~e~-d~h~~e~~~~~~~s~~~~~~~~~ 194 (668)
T KOG2253|consen 163 ASRRQIAEA-DDHCLELEKTETESNSALSKEAE 194 (668)
T ss_pred hhhhhhHHH-HHHHHHHHHhhcccccccCcccc
Confidence 444333321 12223344444544444433333
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.61 E-value=0.076 Score=50.09 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=60.4
Q ss_pred eEEEeCCCCcCcHHHHH---HHHhccCCeEEEEEEeeCC-CCCcce--EEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 281 RIYVGNLPWEVDNARLE---QVFSEHGKVVNARVVYDRE-TGRSRG--FGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~---~~F~~~G~V~~v~i~~d~~-~~~~kG--~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
-+||-+|+..+..+.+. ++|..||.|..|.+-++.. .....| -+||+|...++|..||...+|..+.|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 57777888776665543 5788899999999988762 111111 37999999999999999999999999998877
Q ss_pred Ecccc
Q 017842 355 VAEDR 359 (365)
Q Consensus 355 ~a~~~ 359 (365)
+...+
T Consensus 159 ~gttk 163 (327)
T KOG2068|consen 159 LGTTK 163 (327)
T ss_pred hCCCc
Confidence 76543
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.38 E-value=0.78 Score=34.67 Aligned_cols=57 Identities=16% Similarity=0.336 Sum_probs=40.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.+...+|+ .|......+|.++|+.||.|..-= + +-..|||.....
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsW---------------------------i-------~dTSAfV~l~~r 52 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSW---------------------------I-------NDTSAFVALHNR 52 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEE---------------------------E-------CTTEEEEEECCC
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEE---------------------------E-------cCCcEEEEeecH
Confidence 34455565 999999999999999999985321 1 234699999999
Q ss_pred HHHHHHHHHHcc
Q 017842 238 EEAEKAVEMFHR 249 (365)
Q Consensus 238 e~a~~Al~~lng 249 (365)
+.|..++..++.
T Consensus 53 ~~~~~v~~~~~~ 64 (87)
T PF08675_consen 53 DQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 999998888653
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.35 E-value=0.12 Score=50.84 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=58.6
Q ss_pred eEEEeCCCCcC-cHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 281 RIYVGNLPWEV-DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 281 ~lfV~nLp~~~-tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
.|-+.-.|+.. |-.+|..+|..||.|..|.|-+. .-.|.|+|.+..+|.+|.. .++..|++|.|.|.|.++.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 44444445554 45889999999999999988654 2358999999999999988 7999999999999998764
No 195
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.25 E-value=3.3 Score=42.04 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=29.8
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCccC--CeeEEEEEc
Q 017842 322 GFGFVTMSSETELNDAIAALDGQNLD--GRAIRVNVA 356 (365)
Q Consensus 322 G~afV~F~s~~~a~~Al~~l~~~~l~--gr~l~V~~a 356 (365)
-||.|+|.+...|......++|..|. |..|-++|-
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 38999999999999999999999884 567777664
No 196
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.07 E-value=0.14 Score=53.67 Aligned_cols=72 Identities=25% Similarity=0.307 Sum_probs=61.0
Q ss_pred EEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc--CCeeEEEEEcccc
Q 017842 282 IYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL--DGRAIRVNVAEDR 359 (365)
Q Consensus 282 lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l--~gr~l~V~~a~~~ 359 (365)
..+.|.+-..+-..|..+|..||.|...+.+|+- ..|.|.|.+.+.|..|+.+|+|+.+ .|.+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444556677778899999999999999999884 3799999999999999999999965 6889999998753
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.01 E-value=0.98 Score=32.66 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=42.5
Q ss_pred cCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 290 EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 290 ~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
.++-++++..+..|+ -. +|..|+ .|| ||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999994 23 344443 344 99999999999999999999888777654
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.90 E-value=0.74 Score=45.19 Aligned_cols=67 Identities=10% Similarity=0.215 Sum_probs=57.8
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 347 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~ 347 (365)
++.|+|-.+|..++--+|-.|+..+- .|..++|+||.. -.+-.++|.|.+..+|......+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 56899999999999999999998764 789999999732 22456899999999999999999999884
No 199
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=90.42 E-value=0.37 Score=47.26 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=3.9
Q ss_pred CCeEEEcCC
Q 017842 159 DAKLFVGNL 167 (365)
Q Consensus 159 ~~tvfVgnL 167 (365)
...+|.-+.
T Consensus 121 d~~~WtP~~ 129 (458)
T PF10446_consen 121 DYEFWTPGA 129 (458)
T ss_pred cceeecccc
Confidence 344444443
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.39 E-value=1.9 Score=36.05 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=56.0
Q ss_pred CCCCCCeEEEcCCCCCCC-HHH---HHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceE
Q 017842 155 EPPEDAKLFVGNLPYDVD-SEK---LAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFG 230 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t-~~~---L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a 230 (365)
..++-.||.|+=|..++. .++ +...++.||+|.++.. -.+..|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~---------------------------------cGrqsa 128 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL---------------------------------CGRQSA 128 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee---------------------------------cCCceE
Confidence 455677999998888773 334 4455688999998762 245679
Q ss_pred EEEeCCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 231 FVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 231 fV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
.|+|.+..+|=+|+.++.. ...|..+.+.+..
T Consensus 129 vVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 129 VVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred EEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 9999999999999998554 6677888777643
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.08 E-value=0.65 Score=43.30 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=54.5
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-eEEEEEcccc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AIRVNVAEDR 359 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr-~l~V~~a~~~ 359 (365)
=|-|-+.|.. .-.-|..+|..||.|........ -.+-+|.|.++.+|.+||. .||+.|+|- -|-|..|.++
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 4566677654 34567789999999988865522 3489999999999999999 799999875 5667776655
Q ss_pred c
Q 017842 360 Q 360 (365)
Q Consensus 360 ~ 360 (365)
.
T Consensus 271 s 271 (350)
T KOG4285|consen 271 S 271 (350)
T ss_pred H
Confidence 4
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.05 E-value=0.15 Score=48.12 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 158 EDAKLFVGNLPYDVDSEKLA---MLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~---~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
...-+||-+|+.....+.+. ..|.+||.|..+.+.-..- . ........-+||+|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S----------------------~-~s~~~~~~s~yITy 132 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS----------------------S-SSSSGGTCSVYITY 132 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc----------------------c-ccCCCCCCcccccc
Confidence 44678999999888655544 4688899988775321100 0 00111223389999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
...++|..||...+|....|+.|+..+...+
T Consensus 133 ~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 133 EEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred cchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 9999999999999999999999877655444
No 203
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.99 E-value=0.4 Score=43.71 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=58.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
..|||.||+.-+.-+.|...|+.||+|.... ++.+ ..++..+-++|.|...-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av--------------------------~~vD-~r~k~t~eg~v~~~~k~~ 84 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAV--------------------------AKVD-DRGKPTREGIVEFAKKPN 84 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchhe--------------------------eeec-ccccccccchhhhhcchh
Confidence 5799999999999999999999999998764 3333 466778889999999999
Q ss_pred HHHHHHHHcc----CcccCeeEEEe
Q 017842 240 AEKAVEMFHR----YDIDGRLLTVN 260 (365)
Q Consensus 240 a~~Al~~lng----~~~~gr~l~V~ 260 (365)
+.+|+..++- ....+++.-|.
T Consensus 85 a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 85 ARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred HHHHHHHhccCccccCCCCCccCCC
Confidence 9999988742 33345555553
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.83 E-value=0.88 Score=45.81 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhc--cCCeEEEEEEee
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSE--HGKVVNARVVYD 314 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~--~G~V~~v~i~~d 314 (365)
.+-...+|....++.++.+-.+|.... ..|.|.++-||.....++++.+|.. +-.+.+|.+..+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~--------------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N 212 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNH--------------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN 212 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCc--------------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec
Confidence 334444555555666666666665322 2357888999999999999999975 557888877654
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCeeEEEE
Q 017842 315 RETGRSRGFGFVTMSSETELNDAIAALDG--QNLDGRAIRVN 354 (365)
Q Consensus 315 ~~~~~~kG~afV~F~s~~~a~~Al~~l~~--~~l~gr~l~V~ 354 (365)
. -=||+|.+..+|..|.+.|.. +.|.|+.|-.+
T Consensus 213 ~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 213 D-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred C-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 2 158999999999999998754 36667665443
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.74 E-value=0.25 Score=48.70 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=59.4
Q ss_pred CCeEEEcCCCCCC-CHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 159 DAKLFVGNLPYDV-DSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 159 ~~tvfVgnLp~~~-t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.+.+-+.-.|+.. +..+|..+|.+||.|..|.+. .+.--|.|+|.+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~--------------------------------~~~~~a~vTF~t~ 419 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVD--------------------------------YSSLHAVVTFKTR 419 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCcccccccc--------------------------------Cchhhheeeeecc
Confidence 4556666667666 678899999999999887632 2245689999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
..|-.|... .+.+|++|.|+|.|..+..
T Consensus 420 aeag~a~~s-~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 420 AEAGEAYAS-HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred ccccchhcc-ccceecCceeEEEEecCCc
Confidence 999878766 9999999999999987644
No 206
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.40 E-value=1.8 Score=32.74 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=39.8
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~ 343 (365)
..+|. .|..+...+|.++|+.||.|. |..+.| ..|||...+.+.|..|+..++-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 44454 999999999999999999875 444434 2699999999999999987753
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.86 E-value=1.9 Score=33.11 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=45.8
Q ss_pred EEEEeCCHHHHHHHHHHHc-cCcccCeeEEEeecCCCCCCCC-CCCCcCCCCceEEEeCCCCcCcHHHHHHHH
Q 017842 230 GFVTMSTVEEAEKAVEMFH-RYDIDGRLLTVNKAAPRGTQPE-RAPRVFEPGFRIYVGNLPWEVDNARLEQVF 300 (365)
Q Consensus 230 afV~f~~~e~a~~Al~~ln-g~~~~gr~l~V~~a~~~~~~~~-~~~~~~~~~~~lfV~nLp~~~tee~L~~~F 300 (365)
|.|+|.+...|.+.+++-. ...+++..+.|........... -......++++|-|.|||...++++|+..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999887621 2445666666643322111111 111233455699999999999999998654
No 208
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.39 E-value=0.58 Score=43.06 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=53.0
Q ss_pred ceEEEeCCCCc------------CcHHHHHHHHhccCCeEEEEEEee-----CCCCCc-----ceE---------EEEEe
Q 017842 280 FRIYVGNLPWE------------VDNARLEQVFSEHGKVVNARVVYD-----RETGRS-----RGF---------GFVTM 328 (365)
Q Consensus 280 ~~lfV~nLp~~------------~tee~L~~~F~~~G~V~~v~i~~d-----~~~~~~-----kG~---------afV~F 328 (365)
-||++.+||-. .++..|+..|+.||.|..|.|+.- .-+|+. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 48888888832 356889999999999999988532 112332 333 36777
Q ss_pred cCHHHHHHHHHHhCCCcc----CCe----eEEEEEccc
Q 017842 329 SSETELNDAIAALDGQNL----DGR----AIRVNVAED 358 (365)
Q Consensus 329 ~s~~~a~~Al~~l~~~~l----~gr----~l~V~~a~~ 358 (365)
...-....|+..|.|..+ .|+ .+.|.|..+
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 777777788888888755 333 555555443
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.91 E-value=2.4 Score=37.21 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=43.5
Q ss_pred CHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHHHHHHHHc--c
Q 017842 172 DSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFH--R 249 (365)
Q Consensus 172 t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~~Al~~ln--g 249 (365)
....|+.+|..|+.+..+. .+ ++-+-..|.|.+.++|.+|...|+ +
T Consensus 8 ~~~~l~~l~~~~~~~~~~~--------------------------~L------~sFrRi~v~f~~~~~A~~~r~~l~~~~ 55 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFS--------------------------PL------KSFRRIRVVFESPESAQRARQLLHWDG 55 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEE--------------------------EE------TTTTEEEEE-SSTTHHHHHHHTST--T
T ss_pred hHHHHHHHHHhcCCceEEE--------------------------Ec------CCCCEEEEEeCCHHHHHHHHHHhcccc
Confidence 4578999999999876653 11 334558899999999999999999 9
Q ss_pred CcccCeeEEEeecCCC
Q 017842 250 YDIDGRLLTVNKAAPR 265 (365)
Q Consensus 250 ~~~~gr~l~V~~a~~~ 265 (365)
..+.|..|+|.++...
T Consensus 56 ~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 56 TSFNGKRLRVYFGQPT 71 (184)
T ss_dssp SEETTEE-EEE----S
T ss_pred cccCCCceEEEEcccc
Confidence 9999999999887544
No 210
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=84.80 E-value=1.4 Score=47.93 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=14.7
Q ss_pred EcCCCCCC----CHHHHHHHHHccC
Q 017842 164 VGNLPYDV----DSEKLAMLFEKAG 184 (365)
Q Consensus 164 VgnLp~~~----t~~~L~~~F~~~G 184 (365)
-..||+.. +.++|..++..+.
T Consensus 415 ~~elPftf~~P~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 415 KSELPFTFPCPSSHEELLELLDGYS 439 (840)
T ss_pred ccCCCceecCCCCHHHHHHHHhcCC
Confidence 44566553 7788999998765
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.66 E-value=5.7 Score=39.22 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHcc-CCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKA-GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~-G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
..+.|+|-.+|..++..+|..|...+ -.|..++ ++++.. .++=...|.|.+
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~ir--------------------------ivRd~~--pnrymvLIkFr~ 124 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIR--------------------------IVRDGM--PNRYMVLIKFRD 124 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeE--------------------------EeecCC--CceEEEEEEecc
Confidence 37899999999999999999998764 3455544 666432 234457999999
Q ss_pred HHHHHHHHHHHccCcccC------eeEEEeec
Q 017842 237 VEEAEKAVEMFHRYDIDG------RLLTVNKA 262 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~g------r~l~V~~a 262 (365)
.++|......+||..|+. +.|.|..+
T Consensus 125 q~da~~Fy~efNGk~Fn~le~e~Chll~V~~v 156 (493)
T KOG0804|consen 125 QADADTFYEEFNGKQFNSLEPEVCHLLYVDRV 156 (493)
T ss_pred chhHHHHHHHcCCCcCCCCCccceeEEEEEEE
Confidence 999999999999999865 55666543
No 212
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.35 E-value=6.2 Score=28.14 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=38.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHcc----CCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKA----GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~----G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..|+|.++. +++.++++.+|..| ++. .+. .+- -..|=|+|.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IE--------------------------WId-------DtScNvvf~ 50 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIE--------------------------WID-------DTSCNVVFK 50 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEE--------------------------Eec-------CCcEEEEEC
Confidence 479999984 47888999999998 432 222 221 123679999
Q ss_pred CHHHHHHHHHHH
Q 017842 236 TVEEAEKAVEMF 247 (365)
Q Consensus 236 ~~e~a~~Al~~l 247 (365)
+.+.|.+|+..|
T Consensus 51 d~~~A~~AL~~L 62 (62)
T PF10309_consen 51 DEETAARALVAL 62 (62)
T ss_pred CHHHHHHHHHcC
Confidence 999999998753
No 213
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=83.74 E-value=0.095 Score=40.80 Aligned_cols=43 Identities=23% Similarity=0.137 Sum_probs=30.6
Q ss_pred cCCCCcccc-cCCCCccCCCCCCc-ee-eeccccccCCCccccccc
Q 017842 21 LLSPPSIFA-RNPYFSIHPRPRPI-KL-HLSDSSLSSKGFSFKLKK 63 (365)
Q Consensus 21 ~~~~~~~f~-~~~~~~~~~~~~p~-~~-~~~~~~~~~~~~~~~~~~ 63 (365)
.+.++.||. ||+..|+++.+.|. +. ...+++++.+...|....
T Consensus 6 Pp~ll~LF~PRPPL~y~pP~d~~p~~r~t~~itGvs~~l~~~~~~~ 51 (94)
T PF12220_consen 6 PPNLLALFAPRPPLPYLPPIDYPPEKRKTPPITGVSQYLSEFEDYK 51 (94)
T ss_pred CHHHHHHcCCCCCCCCCCccccCcccccCCCCCcHHHHHHHHhccc
Confidence 455779999 99999999988876 32 223777777765555444
No 214
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=81.95 E-value=0.87 Score=49.17 Aligned_cols=7 Identities=43% Similarity=0.852 Sum_probs=3.3
Q ss_pred HHHHHHc
Q 017842 176 LAMLFEK 182 (365)
Q Consensus 176 L~~~F~~ 182 (365)
|.++|..
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 4445543
No 215
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=81.70 E-value=16 Score=29.31 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.5
Q ss_pred EEecCCCCCccceEEEEeCCHHHHHHHHHHHccCcccC
Q 017842 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDG 254 (365)
Q Consensus 217 ~~~~~~~~~~~g~afV~f~~~e~a~~Al~~lng~~~~g 254 (365)
++++. ..++-.+.+.|.+..+|......+||..|+.
T Consensus 46 iird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 46 IIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 55543 2356678999999999999999999988854
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.11 E-value=7.6 Score=28.04 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHHHHHHHHcc
Q 017842 170 DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHR 249 (365)
Q Consensus 170 ~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~~Al~~lng 249 (365)
.++-.+++..+..|+-.. |+ ...+ | -||+|.+..+|+++....+|
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-----------------------------I~-~d~t----G-fYIvF~~~~Ea~rC~~~~~~ 55 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-----------------------------IR-DDRT----G-FYIVFNDSKEAERCFRAEDG 55 (66)
T ss_pred CccHHHHHHHHhcCCcce-----------------------------EE-ecCC----E-EEEEECChHHHHHHHHhcCC
Confidence 457789999999987542 12 1123 3 49999999999999999999
Q ss_pred CcccCeeEEE
Q 017842 250 YDIDGRLLTV 259 (365)
Q Consensus 250 ~~~~gr~l~V 259 (365)
..+.+-.|.+
T Consensus 56 ~~~f~y~m~M 65 (66)
T PF11767_consen 56 TLFFTYRMQM 65 (66)
T ss_pred CEEEEEEEEe
Confidence 9888776654
No 217
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=77.75 E-value=2.1 Score=35.87 Aligned_cols=84 Identities=12% Similarity=0.198 Sum_probs=60.9
Q ss_pred ccceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCc-CcHHHHHHHHhccC
Q 017842 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWE-VDNARLEQVFSEHG 304 (365)
Q Consensus 226 ~~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~tee~L~~~F~~~G 304 (365)
..++..+.|.+.+++.+++.. ....++|+.+.+....+....... .......=|.|.|||.. .+++-|+.+.+.+|
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~--~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEV--KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccccc--ceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 468899999999999988875 667788888888776643221111 01111224778999987 67888999999999
Q ss_pred CeEEEEEE
Q 017842 305 KVVNARVV 312 (365)
Q Consensus 305 ~V~~v~i~ 312 (365)
.+..+...
T Consensus 131 ~~i~vD~~ 138 (153)
T PF14111_consen 131 EPIEVDEN 138 (153)
T ss_pred CeEEEEcC
Confidence 99888654
No 218
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=77.20 E-value=5.6 Score=40.31 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=53.2
Q ss_pred ccCCCC-CCeEEEcCCCCCCCHHHHHHHHHc--cCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccce
Q 017842 153 FVEPPE-DAKLFVGNLPYDVDSEKLAMLFEK--AGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGF 229 (365)
Q Consensus 153 ~~~~~~-~~tvfVgnLp~~~t~~~L~~~F~~--~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 229 (365)
.+.+.. .+.|.++.||..+-.+.++.+|.. |-++.+|.+- . ...
T Consensus 168 kVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--------------------------------~-N~n 214 (684)
T KOG2591|consen 168 KVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--------------------------------H-NDN 214 (684)
T ss_pred ccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--------------------------------e-cCc
Confidence 334443 345788999999999999999954 6666666531 1 123
Q ss_pred EEEEeCCHHHHHHHHHHHcc--CcccCeeEEE
Q 017842 230 GFVTMSTVEEAEKAVEMFHR--YDIDGRLLTV 259 (365)
Q Consensus 230 afV~f~~~e~a~~Al~~lng--~~~~gr~l~V 259 (365)
=||+|.+..+|+.|.+.|.. ..|.|++|-.
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 59999999999999988753 4567766643
No 219
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.44 E-value=2.8 Score=40.61 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=44.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
-...|=|-++|.....++|...|..||. ..+.|+| + ..-.||.+|.+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkW------------------------v-------DdthalaVFss~ 437 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKW------------------------V-------DDTHALAVFSSV 437 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhc-CCceeEE------------------------e-------ecceeEEeecch
Confidence 3567899999999999999999999974 2334432 1 233589999999
Q ss_pred HHHHHHHHH
Q 017842 238 EEAEKAVEM 246 (365)
Q Consensus 238 e~a~~Al~~ 246 (365)
..|..||.+
T Consensus 438 ~~AaeaLt~ 446 (528)
T KOG4483|consen 438 NRAAEALTL 446 (528)
T ss_pred HHHHHHhhc
Confidence 999999876
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.63 E-value=15 Score=26.93 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=20.6
Q ss_pred cceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeec
Q 017842 227 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 227 ~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a 262 (365)
..|+||+-... .|..++..|++..+.|+.++|..|
T Consensus 40 ~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 40 DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45889888655 677799999999999999999764
No 221
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=73.91 E-value=2.7 Score=44.56 Aligned_cols=73 Identities=27% Similarity=0.262 Sum_probs=58.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
+.++.|.+-+.+...|..+|.+||.|.++. +-+.-..|.|.|.+.+.|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~w--------------------------------tlr~~N~alvs~~s~~sa 347 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAW--------------------------------TLRDLNMALVSFSSVESA 347 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhe--------------------------------ecccccchhhhhHHHHHH
Confidence 455666677778889999999999998765 224456799999999999
Q ss_pred HHHHHHHccCcc--cCeeEEEeecCCC
Q 017842 241 EKAVEMFHRYDI--DGRLLTVNKAAPR 265 (365)
Q Consensus 241 ~~Al~~lng~~~--~gr~l~V~~a~~~ 265 (365)
-.|+..|+|..+ .|-+.+|..++.-
T Consensus 348 i~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 348 ILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred HHhhhhhcCCcccccCCceeEEecccc
Confidence 999999999765 7888888777543
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.15 E-value=84 Score=29.61 Aligned_cols=165 Identities=12% Similarity=0.061 Sum_probs=95.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..|.|...||..+++-..+...|.+||+|++|.+.-.--. ---+...........+.|-+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~-------------------~~d~~~~d~~~~SilLSFlsr 74 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDK-------------------PSDDYNDDKNNQSILLSFLSR 74 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCc-------------------ccccccccccceEEEEeeech
Confidence 3577999999999999999999999999999884211000 000011223346678889888
Q ss_pred HHHHHHH----HHHc--cCcccCeeEEEeecCCCCCC-----CCCCC-------------CcCCCCceEEEeCCCCcC-c
Q 017842 238 EEAEKAV----EMFH--RYDIDGRLLTVNKAAPRGTQ-----PERAP-------------RVFEPGFRIYVGNLPWEV-D 292 (365)
Q Consensus 238 e~a~~Al----~~ln--g~~~~gr~l~V~~a~~~~~~-----~~~~~-------------~~~~~~~~lfV~nLp~~~-t 292 (365)
+.+.... +.|+ ...+.-..|+|..+.-.-.. ..... ......+.|.|.=- ..+ .
T Consensus 75 ~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~ 153 (309)
T PF10567_consen 75 EICLDFYNNVLQRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDK 153 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-Cccch
Confidence 8765433 2222 35567788888665421110 00000 01122335555433 233 3
Q ss_pred HHHHHHHH---hccC----CeEEEEEEeeCC--CCCcceEEEEEecCHHHHHHHHHHhC
Q 017842 293 NARLEQVF---SEHG----KVVNARVVYDRE--TGRSRGFGFVTMSSETELNDAIAALD 342 (365)
Q Consensus 293 ee~L~~~F---~~~G----~V~~v~i~~d~~--~~~~kG~afV~F~s~~~a~~Al~~l~ 342 (365)
++-+++.+ ..-+ -++.|.|+.... ..-++.||.+.|-+..-|...+..|.
T Consensus 154 ~dl~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 154 DDLIEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred hHHHHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 33333333 2223 366666664322 34578899999999999998888765
No 223
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=71.24 E-value=3.1 Score=45.01 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=9.2
Q ss_pred CCCHHHHHHHHHccCC
Q 017842 170 DVDSEKLAMLFEKAGT 185 (365)
Q Consensus 170 ~~t~~~L~~~F~~~G~ 185 (365)
+++.+++..+=.....
T Consensus 728 ~mdDe~m~~lD~~La~ 743 (784)
T PF04931_consen 728 DMDDEQMMALDEQLAA 743 (784)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4566666666555443
No 224
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=65.38 E-value=12 Score=27.31 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=46.0
Q ss_pred HHHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 294 ARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 294 e~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
.+|.+-|..+| .|..++.+..+.++.+...-+|......+... .|+=+.|+|+++.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46778888888 78899888887777888888888876543333 456677899998888654
No 225
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=64.74 E-value=16 Score=39.60 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=27.4
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHHccCcccCeeEEE
Q 017842 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTV 259 (365)
Q Consensus 223 ~~~~~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V 259 (365)
...-+||-||+=.....+..||+-+-+.... +.+-|
T Consensus 206 ~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 206 KDHLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred ccccceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 4467899999998899999999887766555 44444
No 226
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=57.85 E-value=30 Score=27.84 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCCcCcHHHHHHHHhc---cCCeEEEEEEeeCCCCCcceEEEEEecCHH
Q 017842 287 LPWEVDNARLEQVFSE---HGKVVNARVVYDRETGRSRGFGFVTMSSET 332 (365)
Q Consensus 287 Lp~~~tee~L~~~F~~---~G~V~~v~i~~d~~~~~~kG~afV~F~s~~ 332 (365)
-|+.+|-.+|+++|.. |..|+.-.+.+|.--.-+-..||.-|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 4788999999999975 556666666666332223447888887653
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=56.76 E-value=19 Score=33.50 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCe
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTV 186 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i 186 (365)
....|+++|||.++.-.+|+..+.+.|.+
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~ 357 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT 357 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC
Confidence 34569999999999999999999887643
No 228
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.09 E-value=16 Score=31.83 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=54.9
Q ss_pred ceEEEeCCCCcCc-----HHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-eEEE
Q 017842 280 FRIYVGNLPWEVD-----NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AIRV 353 (365)
Q Consensus 280 ~~lfV~nLp~~~t-----ee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr-~l~V 353 (365)
+++++.+++..+- ......+|..|......++++. .++..|-|.+...|..|...+++..|.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3677788765432 2344566666666666666533 56678899999999999999999999988 8888
Q ss_pred EEcccccc
Q 017842 354 NVAEDRQR 361 (365)
Q Consensus 354 ~~a~~~~~ 361 (365)
-++.....
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 77765543
No 229
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=53.15 E-value=28 Score=25.25 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=44.9
Q ss_pred HHHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 294 ARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 294 e~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
++|.+-|...| .|..|.-+..+.++.+.-.-||.+....+... .++=+.++|..|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 46777888888 78888777777677788888999886655332 3455678899988886543
No 230
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.73 E-value=3.4 Score=40.59 Aligned_cols=78 Identities=6% Similarity=-0.108 Sum_probs=62.8
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
++.|+..||....+.++.-+|..||.|..+..-+.-..+.++-.+||.-.. ..+..++.-+.-+.+.|-++|+.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 366788999999999999999999999999887766667777788888765 456667776777778888888887753
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.64 E-value=33 Score=27.71 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=32.0
Q ss_pred eEEEeCCCCcC---------cHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecC-HHHHHHHHH
Q 017842 281 RIYVGNLPWEV---------DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS-ETELNDAIA 339 (365)
Q Consensus 281 ~lfV~nLp~~~---------tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s-~~~a~~Al~ 339 (365)
++.|-|++... +.+.|...|..|..+. |+.+.+.. -+.|+++|.|.+ -.--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 56777876443 4578999999997764 66666643 568999999985 444555554
No 232
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=46.12 E-value=16 Score=42.27 Aligned_cols=8 Identities=38% Similarity=0.397 Sum_probs=3.3
Q ss_pred Ccceeeec
Q 017842 68 SSFTTFVA 75 (365)
Q Consensus 68 ~~~~~~~~ 75 (365)
||...+|.
T Consensus 146 ~~~~~~~~ 153 (2849)
T PTZ00415 146 SPRDNFVI 153 (2849)
T ss_pred Cccccccc
Confidence 34444443
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.49 E-value=6.3 Score=36.49 Aligned_cols=34 Identities=15% Similarity=0.389 Sum_probs=27.3
Q ss_pred CCeEEEcCCCCCC------------CHHHHHHHHHccCCeEEEEEe
Q 017842 159 DAKLFVGNLPYDV------------DSEKLAMLFEKAGTVEIAEVK 192 (365)
Q Consensus 159 ~~tvfVgnLp~~~------------t~~~L~~~F~~~G~i~~~~i~ 192 (365)
..||++.+||-.+ ++.-|+..|..||.|..+.|.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4589999998532 567799999999999988764
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=44.27 E-value=3.9 Score=41.38 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=54.8
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR 349 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr 349 (365)
.|+||++|++.+.+-.+|..+|..+-.+..+.+-.+....+-..+++|.|+-......|.-+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 46899999999999999999999987666665544433455567899999977777777777888766443
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.18 E-value=69 Score=31.44 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=45.3
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCC-eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHH
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGK-VVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~-V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~ 339 (365)
-...|-|.|.|...--++|...|..||+ --.|.++.|. .||..|.+...|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 3458999999999999999999999964 4456666553 69999999999999998
No 236
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=43.56 E-value=24 Score=30.76 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=33.0
Q ss_pred CccceEEEEeCCHHHHHHHHHHHccCcccCe-eEEEeecCCC
Q 017842 225 RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGR-LLTVNKAAPR 265 (365)
Q Consensus 225 ~~~g~afV~f~~~e~a~~Al~~lng~~~~gr-~l~V~~a~~~ 265 (365)
++.++--|-|.+++.|..|..++++..|.|+ .+..-.+.+.
T Consensus 49 rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 49 RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 3455667889999999999999999999988 7777666544
No 237
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=42.29 E-value=2.8e+02 Score=30.63 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=31.1
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 305 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 305 ~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
.|.+|. .+| .-+||-||+=.-..++..||+.+-+.... +.+-|
T Consensus 199 qI~Sv~-a~D----~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 199 QIKSVF-AKD----HLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred eEEEEE-ecc----ccceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 455553 334 24999999999999999999988776655 44433
No 238
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=41.66 E-value=60 Score=30.40 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=40.0
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCH-------HHHHHHHHHhC
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSE-------TELNDAIAALD 342 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~-------~~a~~Al~~l~ 342 (365)
+-|+++||+.+..-.+|+..+.+.|.+- .+|-. .-+.|-||+.|-+. .++.+++..++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4799999999999999999998876432 22221 22467899999764 34555555443
No 239
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.99 E-value=33 Score=33.32 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=49.5
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccC-CeEEEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRET--GRSRGFGFVTMSSETELNDAIAALDGQNL 346 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~~~--~~~kG~afV~F~s~~~a~~Al~~l~~~~l 346 (365)
+.+.|.+||...++++|.+....+- .|....+.....+ +.-.+.|||-|....++..-...++|+++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4799999999999999998888763 3444444322111 12266799999999998888888888876
No 240
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=34.29 E-value=16 Score=35.74 Aligned_cols=60 Identities=23% Similarity=0.133 Sum_probs=49.3
Q ss_pred ceEEEeCCCCcCcH--------HHHHHHHhc--cCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHH
Q 017842 280 FRIYVGNLPWEVDN--------ARLEQVFSE--HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339 (365)
Q Consensus 280 ~~lfV~nLp~~~te--------e~L~~~F~~--~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~ 339 (365)
+.+|+.+.+...+. +++...|.. ++.+..++..++......+|..|++|.....+++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 46777777655444 489999998 6789999999998778889999999999999998873
No 241
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=32.17 E-value=98 Score=29.17 Aligned_cols=77 Identities=10% Similarity=0.176 Sum_probs=57.5
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCC-------CCCcceEEEEEecCHHHHHHH----HHHhCC--CccC
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE-------TGRSRGFGFVTMSSETELNDA----IAALDG--QNLD 347 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~-------~~~~kG~afV~F~s~~~a~~A----l~~l~~--~~l~ 347 (365)
.|...|+...++--.+-..|-.||.|++|.++.+.. ..+..-...+-|-+...+..- ++.|+. ..+.
T Consensus 17 SLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~ 96 (309)
T PF10567_consen 17 SLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLK 96 (309)
T ss_pred HHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcC
Confidence 688899998998888999999999999999987651 123345688999988776544 333332 3667
Q ss_pred CeeEEEEEcc
Q 017842 348 GRAIRVNVAE 357 (365)
Q Consensus 348 gr~l~V~~a~ 357 (365)
...|.|+|..
T Consensus 97 S~~L~lsFV~ 106 (309)
T PF10567_consen 97 SESLTLSFVS 106 (309)
T ss_pred CcceeEEEEE
Confidence 8888888865
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.89 E-value=1.1e+02 Score=21.87 Aligned_cols=19 Identities=16% Similarity=0.438 Sum_probs=15.9
Q ss_pred HHHHHHHHccCCeEEEEEe
Q 017842 174 EKLAMLFEKAGTVEIAEVK 192 (365)
Q Consensus 174 ~~L~~~F~~~G~i~~~~i~ 192 (365)
.+|+++|+..|.|..+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999887643
No 243
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.87 E-value=67 Score=23.27 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCccC
Q 017842 322 GFGFVTMSSETELNDAIAALDGQNLD 347 (365)
Q Consensus 322 G~afV~F~s~~~a~~Al~~l~~~~l~ 347 (365)
.+++|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36899999999999999988766553
No 244
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.53 E-value=76 Score=32.68 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=32.1
Q ss_pred CCCCceEEEeCCCCc-CcHHHHHHHHhcc----CCeEEEEEEee
Q 017842 276 FEPGFRIYVGNLPWE-VDNARLEQVFSEH----GKVVNARVVYD 314 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~-~tee~L~~~F~~~----G~V~~v~i~~d 314 (365)
...+.+|-|.||.|. +...+|.-+|+.| |.|.+|.|...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 344559999999996 7789999999987 68999999754
No 245
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=28.73 E-value=18 Score=30.58 Aligned_cols=7 Identities=29% Similarity=0.833 Sum_probs=4.5
Q ss_pred Cceeeec
Q 017842 42 PIKLHLS 48 (365)
Q Consensus 42 p~~~~~~ 48 (365)
|+.++|.
T Consensus 87 pVtf~L~ 93 (149)
T PF03066_consen 87 PVTFRLK 93 (149)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 7766664
No 246
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=27.75 E-value=43 Score=30.92 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=3.5
Q ss_pred cccccccc
Q 017842 60 KLKKTTHF 67 (365)
Q Consensus 60 ~~~~~~~~ 67 (365)
|...|++.
T Consensus 226 SmStR~hk 233 (314)
T PF06524_consen 226 SMSTRSHK 233 (314)
T ss_pred eeeeecch
Confidence 33444543
No 247
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=27.35 E-value=68 Score=32.19 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=7.7
Q ss_pred CCCeEEEcCCCCCCC
Q 017842 158 EDAKLFVGNLPYDVD 172 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t 172 (365)
...+||-.-....+.
T Consensus 315 ~dYkvftr~fDe~v~ 329 (620)
T COG4547 315 VDYKVFTREFDEIVL 329 (620)
T ss_pred ccccccchhhhhhhh
Confidence 345566655554443
No 248
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=25.99 E-value=35 Score=37.44 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=4.4
Q ss_pred CeEEEcCCCC
Q 017842 160 AKLFVGNLPY 169 (365)
Q Consensus 160 ~tvfVgnLp~ 169 (365)
+-.||-.+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 3445544443
No 249
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=25.67 E-value=86 Score=32.63 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=8.0
Q ss_pred CCeEEEcCCCCCCC
Q 017842 159 DAKLFVGNLPYDVD 172 (365)
Q Consensus 159 ~~tvfVgnLp~~~t 172 (365)
..+||-.-....+.
T Consensus 295 ~Y~vfTt~fDe~i~ 308 (600)
T TIGR01651 295 DYKVFTTAFDETVD 308 (600)
T ss_pred cceecchhhhhhcc
Confidence 56677665555443
No 250
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=25.37 E-value=84 Score=31.58 Aligned_cols=9 Identities=44% Similarity=0.755 Sum_probs=4.9
Q ss_pred cccCeeEEE
Q 017842 251 DIDGRLLTV 259 (365)
Q Consensus 251 ~~~gr~l~V 259 (365)
.+.||+|.|
T Consensus 425 SMrGRpItv 433 (620)
T COG4547 425 SMRGRPITV 433 (620)
T ss_pred CcCCcceeh
Confidence 345566655
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=25.27 E-value=54 Score=29.86 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.5
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEE
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNAR 310 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~ 310 (365)
+||+-|+|...|++-|.++.+.+|.+..+.
T Consensus 42 ~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 42 CLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 899999999999999999999988655543
No 252
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=24.30 E-value=51 Score=34.70 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.4
Q ss_pred CCCCce
Q 017842 39 RPRPIK 44 (365)
Q Consensus 39 ~~~p~~ 44 (365)
+.+|+.
T Consensus 83 shRP~~ 88 (622)
T PF02724_consen 83 SHRPWN 88 (622)
T ss_pred CCCCcc
Confidence 334443
No 253
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.22 E-value=1.4e+02 Score=23.20 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=21.3
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecC
Q 017842 305 KVVNARVVYDRETGRSRGFGFVTMSS 330 (365)
Q Consensus 305 ~V~~v~i~~d~~~~~~kG~afV~F~s 330 (365)
.|+.|+|.+-...|+-+|||-|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47888887665668889999999987
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=23.90 E-value=23 Score=36.07 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=50.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++||+.|++++.+-.+|..++..+--...+.+ -..........+++|.|+--
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfal--------------------------s~~~aek~~~r~lwv~fk~~ 283 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFAL--------------------------STINAEKNFERRLWVTFKRG 283 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeec--------------------------cCchHHHHHHHHhhHhhccc
Confidence 3568999999999999999999988644333221 11112234456789999888
Q ss_pred HHHHHHHHHHccCcccC
Q 017842 238 EEAEKAVEMFHRYDIDG 254 (365)
Q Consensus 238 e~a~~Al~~lng~~~~g 254 (365)
-....|+..||+..+.-
T Consensus 284 ~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 284 TNIKEACWALNGIRLRS 300 (648)
T ss_pred cchHHHHHHhhhccccc
Confidence 88888888888766543
No 255
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.64 E-value=70 Score=29.12 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=29.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEE
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAE 190 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~ 190 (365)
....+++|+-|||..+|++.|..+.+.+|.+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 34567999999999999999999999999766544
No 256
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=22.96 E-value=1.8e+02 Score=22.13 Aligned_cols=44 Identities=34% Similarity=0.491 Sum_probs=28.0
Q ss_pred eEEEeCCCCcCcHHHHHHHHhc-cCCeEEEEEEeeCCCCCcceEEEEEe
Q 017842 281 RIYVGNLPWEVDNARLEQVFSE-HGKVVNARVVYDRETGRSRGFGFVTM 328 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~-~G~V~~v~i~~d~~~~~~kG~afV~F 328 (365)
-|||+|+...+-+ .||+.... .+.-.-+-+..+ +...||+|-.+
T Consensus 27 GVyVg~~s~rVRe-~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~ 71 (86)
T PF09707_consen 27 GVYVGNVSARVRE-RLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTL 71 (86)
T ss_pred CcEEcCCCHHHHH-HHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEe
Confidence 6999999876655 45555544 444444444433 23789999887
No 257
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.58 E-value=3.1e+02 Score=20.75 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=36.9
Q ss_pred CCCcCcHHHHHHHHhc-cC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q 017842 287 LPWEVDNARLEQVFSE-HG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAA 340 (365)
Q Consensus 287 Lp~~~tee~L~~~F~~-~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~ 340 (365)
.+...+..++++.++. || .|..|+...-+. +.--|||++..-+.|......
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 4567889999998887 45 788888775541 223599999988887776543
No 258
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.22 E-value=2e+02 Score=27.22 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=37.2
Q ss_pred EEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHh
Q 017842 230 GFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFS 301 (365)
Q Consensus 230 afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~ 301 (365)
|||+|++..+|..|++.+.... ++.+.|..|..+. -|+=.||........++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~--------------DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD--------------DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc--------------cccccccCCChHHHHHHHHHH
Confidence 7999999999999998654443 3444555443322 466678866666666665554
No 259
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.36 E-value=1.7e+02 Score=22.13 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.2
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecC
Q 017842 305 KVVNARVVYDRETGRSRGFGFVTMSS 330 (365)
Q Consensus 305 ~V~~v~i~~d~~~~~~kG~afV~F~s 330 (365)
.|+.|+|..-...++-+|||=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887766668999999999987
No 260
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=21.23 E-value=1.1e+02 Score=23.66 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=33.2
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc--CCeeEEEEEccccccCC
Q 017842 305 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL--DGRAIRVNVAEDRQRRS 363 (365)
Q Consensus 305 ~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l--~gr~l~V~~a~~~~~~~ 363 (365)
.++.|++++-...+...-..||+|.-.+....-+-.+....+ .| -..-+|+++++++
T Consensus 33 ~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~~~--~~pi~cRp~Pkp~ 91 (92)
T TIGR01638 33 NLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVYLH--RHPIVCRPTPKPL 91 (92)
T ss_pred eEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEecC--CeeEEEecCCCCC
Confidence 788888888766555556689999755443322222322222 23 3456677777664
No 261
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.11 E-value=1.6e+02 Score=22.07 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=23.6
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 017842 305 KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ 344 (365)
Q Consensus 305 ~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~ 344 (365)
.|.++..+ + ..+||-||+=.+..++..|+..+.+.
T Consensus 33 ~I~Si~~~-~----~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP-D----SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE--T----TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe-C----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 45555443 2 35999999999999999999866543
No 262
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.73 E-value=3.3e+02 Score=19.52 Aligned_cols=62 Identities=23% Similarity=0.445 Sum_probs=39.9
Q ss_pred ceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccC
Q 017842 228 GFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG 304 (365)
Q Consensus 228 g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G 304 (365)
.+.+|.|.+...|.+|-+.|....+.++.+-+ |+....+|-+.++=-+ .+.+.+.++++..|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~-------------P~~i~~~CG~al~~~~--~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPT-------------PREISAGCGLALRFEP--EDLEKIKEILEENG 63 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCC-------------ChhccCCCCEEEEECh--hhHHHHHHHHHHCC
Confidence 47899999999999998888776665554432 2222333444443222 46677888887775
No 263
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.03 E-value=84 Score=30.63 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
...|-|.+||...++.+|......+-.- +.+..|..+ . .- ....-.+.|||-|...+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~----v~~~~F~~a--------~--------~s---~~~~~ysrayinFk~~~ 63 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEH----VNWEFFAKA--------D--------ES---LRNHKYSRAYINFKNPE 63 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccc----cchheeccc--------c--------cc---chhhhhhhhhhccccHH
Confidence 4578999999999999888776664321 111111100 0 00 01122577999999999
Q ss_pred HHHHHHHHHccCcc
Q 017842 239 EAEKAVEMFHRYDI 252 (365)
Q Consensus 239 ~a~~Al~~lng~~~ 252 (365)
++......++|+.|
T Consensus 64 dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 64 DVEEFRRRFDGYIF 77 (376)
T ss_pred HHHHHHhhCCceEE
Confidence 98777777666554
Done!