Query 017842
Match_columns 365
No_of_seqs 318 out of 2407
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 9.5E-35 3.2E-39 260.9 19.4 169 158-360 14-182 (213)
2 1b7f_A Protein (SXL-lethal pro 100.0 5.3E-34 1.8E-38 245.0 22.4 165 158-356 2-168 (168)
3 3md3_A Nuclear and cytoplasmic 100.0 4.7E-34 1.6E-38 244.4 21.9 166 160-358 1-166 (166)
4 1fxl_A Paraneoplastic encephal 100.0 8.4E-34 2.9E-38 243.1 22.5 164 159-356 2-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 6.9E-34 2.4E-38 250.6 21.5 177 156-362 10-186 (196)
6 2qfj_A FBP-interacting repress 100.0 6.3E-34 2.2E-38 254.6 18.5 179 158-362 27-208 (216)
7 2cjk_A Nuclear polyadenylated 100.0 2.9E-34 9.9E-39 246.6 11.8 166 158-360 2-167 (167)
8 2yh0_A Splicing factor U2AF 65 100.0 1.4E-32 4.7E-37 242.7 20.7 183 158-362 3-197 (198)
9 3nmr_A Cugbp ELAV-like family 100.0 2.9E-32 1E-36 235.4 21.3 166 158-357 2-175 (175)
10 2g4b_A Splicing factor U2AF 65 100.0 2.5E-32 8.5E-37 235.6 19.2 159 158-357 3-172 (172)
11 1fje_B Nucleolin RBD12, protei 100.0 1.4E-32 4.8E-37 238.2 13.3 167 155-360 9-175 (175)
12 3smz_A Protein raver-1, ribonu 100.0 4.5E-31 1.5E-35 246.6 21.8 172 158-361 94-266 (284)
13 2ghp_A U4/U6 snRNA-associated 100.0 4.9E-31 1.7E-35 247.3 18.2 174 158-360 116-292 (292)
14 3tyt_A Heterogeneous nuclear r 100.0 2E-30 6.8E-35 231.6 19.4 166 158-356 3-204 (205)
15 2adc_A Polypyrimidine tract-bi 100.0 5.3E-30 1.8E-34 232.4 21.9 167 157-359 32-228 (229)
16 3pgw_A U1-A; protein-RNA compl 100.0 8E-30 2.7E-34 237.8 22.6 168 156-357 6-281 (282)
17 3smz_A Protein raver-1, ribonu 100.0 1.4E-29 4.8E-34 236.4 22.1 157 158-361 21-177 (284)
18 1qm9_A Polypyrimidine tract-bi 100.0 3.8E-30 1.3E-34 227.6 17.0 165 159-359 3-197 (198)
19 3sde_A Paraspeckle component 1 100.0 1.9E-29 6.6E-34 233.2 20.8 157 157-360 20-180 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-29 5.6E-34 236.9 18.3 162 155-361 37-199 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-23 3.7E-28 179.8 16.6 144 217-362 5-153 (158)
22 2i2y_A Fusion protein consists 99.9 1.1E-22 3.7E-27 172.3 14.5 133 223-361 9-150 (150)
23 4f25_A Polyadenylate-binding p 99.9 7.5E-22 2.6E-26 159.7 10.8 110 158-295 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 3.6E-21 1.2E-25 151.5 11.8 83 276-358 16-98 (99)
25 2lxi_A RNA-binding protein 10; 99.8 7.6E-21 2.6E-25 147.3 5.8 84 280-363 2-87 (91)
26 2lea_A Serine/arginine-rich sp 99.8 1.8E-20 6E-25 156.0 8.2 127 228-363 5-131 (135)
27 3s8s_A Histone-lysine N-methyl 99.8 8.9E-20 3E-24 146.3 11.1 84 277-360 4-87 (110)
28 3md1_A Nuclear and cytoplasmic 99.8 1.8E-19 6.1E-24 136.5 12.0 82 280-361 2-83 (83)
29 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-19 5.9E-24 137.8 11.6 83 278-360 5-87 (87)
30 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.5E-19 5.2E-24 155.4 12.1 130 232-361 11-154 (165)
31 2lkz_A RNA-binding protein 5; 99.8 3.6E-20 1.2E-24 144.6 6.5 80 279-358 9-94 (95)
32 2dnz_A Probable RNA-binding pr 99.8 3.4E-19 1.2E-23 138.6 12.0 86 278-363 4-89 (95)
33 1p27_B RNA-binding protein 8A; 99.8 3.6E-19 1.2E-23 141.4 12.1 87 275-361 19-105 (106)
34 2cq0_A Eukaryotic translation 99.8 4.5E-19 1.5E-23 140.1 12.4 88 276-363 12-99 (103)
35 2do4_A Squamous cell carcinoma 99.8 7.5E-19 2.6E-23 138.1 13.6 87 275-362 13-99 (100)
36 2cpz_A CUG triplet repeat RNA- 99.8 6.5E-19 2.2E-23 142.1 12.7 87 276-362 22-108 (115)
37 3p5t_L Cleavage and polyadenyl 99.8 6.8E-20 2.3E-24 141.4 6.6 83 280-362 2-86 (90)
38 2dgs_A DAZ-associated protein 99.8 6.9E-19 2.4E-23 138.0 12.4 86 277-363 8-93 (99)
39 2x1f_A MRNA 3'-END-processing 99.8 4.7E-19 1.6E-23 138.2 11.1 84 278-361 1-84 (96)
40 3ns6_A Eukaryotic translation 99.8 1.1E-19 3.6E-24 143.3 7.5 83 279-361 6-95 (100)
41 4fxv_A ELAV-like protein 1; RN 99.8 5.2E-19 1.8E-23 139.1 11.3 81 158-264 18-98 (99)
42 1x5u_A Splicing factor 3B subu 99.8 7.6E-19 2.6E-23 139.2 12.2 88 275-362 11-98 (105)
43 1whw_A Hypothetical protein ri 99.8 6.7E-19 2.3E-23 138.0 11.7 86 277-362 6-91 (99)
44 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-18 4.8E-23 140.0 13.9 88 275-362 11-98 (115)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.8E-19 2E-23 134.3 10.9 81 277-357 5-85 (85)
46 2jrs_A RNA-binding protein 39; 99.8 1.1E-18 3.7E-23 139.5 12.8 87 274-360 21-107 (108)
47 2cpf_A RNA binding motif prote 99.8 5.4E-19 1.8E-23 138.3 10.8 86 278-363 4-92 (98)
48 2dnm_A SRP46 splicing factor; 99.8 5.6E-19 1.9E-23 139.6 10.7 88 275-362 9-96 (103)
49 1x5t_A Splicing factor 3B subu 99.8 3.7E-19 1.3E-23 138.6 9.5 85 278-362 4-89 (96)
50 2dnh_A Bruno-like 5, RNA bindi 99.8 1.8E-18 6.1E-23 137.1 13.5 86 277-363 13-101 (105)
51 1x4h_A RNA-binding protein 28; 99.8 1.1E-18 3.9E-23 139.6 12.4 89 275-363 11-105 (111)
52 1x5s_A Cold-inducible RNA-bind 99.8 6.7E-19 2.3E-23 138.8 10.8 86 277-362 10-95 (102)
53 1oo0_B CG8781-PA, drosophila Y 99.8 7.8E-19 2.7E-23 140.4 11.1 88 275-362 22-109 (110)
54 2cqc_A Arginine/serine-rich sp 99.8 1.5E-18 5E-23 134.9 12.2 83 276-358 12-94 (95)
55 2dng_A Eukaryotic translation 99.8 1.6E-18 5.5E-23 137.0 12.6 86 275-362 11-96 (103)
56 4f25_A Polyadenylate-binding p 99.8 1E-18 3.5E-23 141.2 11.6 81 279-361 5-85 (115)
57 2la6_A RNA-binding protein FUS 99.8 1.3E-18 4.5E-23 136.4 11.9 83 275-357 9-99 (99)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.8E-19 1.6E-23 139.6 9.4 87 277-363 10-96 (102)
59 2cph_A RNA binding motif prote 99.8 2.1E-18 7.2E-23 137.0 12.6 88 275-362 11-100 (107)
60 2dgp_A Bruno-like 4, RNA bindi 99.8 1.1E-18 3.8E-23 138.5 10.6 87 276-362 10-99 (106)
61 2dgx_A KIAA0430 protein; RRM d 99.8 1.5E-18 5.3E-23 135.4 11.2 84 277-363 7-94 (96)
62 2d9p_A Polyadenylate-binding p 99.8 2.5E-18 8.6E-23 135.8 12.6 84 277-362 13-96 (103)
63 2e5h_A Zinc finger CCHC-type a 99.8 1.8E-18 6.3E-23 134.1 11.3 82 276-357 13-94 (94)
64 2div_A TRNA selenocysteine ass 99.8 1.1E-18 3.7E-23 136.8 9.8 87 277-363 7-98 (99)
65 1wi8_A EIF-4B, eukaryotic tran 99.8 2E-18 6.9E-23 136.6 11.3 86 275-362 11-97 (104)
66 2dgv_A HnRNP M, heterogeneous 99.8 2.9E-18 9.8E-23 132.5 11.6 85 277-363 6-90 (92)
67 2cpe_A RNA-binding protein EWS 99.8 2.7E-18 9.2E-23 137.9 11.1 87 276-362 12-106 (113)
68 2cq3_A RNA-binding protein 9; 99.8 8.8E-18 3E-22 132.6 13.7 87 275-363 11-97 (103)
69 1u6f_A Tcubp1, RNA-binding pro 99.8 5.4E-18 1.9E-22 141.2 13.1 88 276-363 39-126 (139)
70 4a8x_A RNA-binding protein wit 99.8 2.6E-18 8.8E-23 131.5 10.2 82 279-360 4-86 (88)
71 2dhg_A TRNA selenocysteine ass 99.8 2.8E-18 9.6E-23 135.7 10.5 85 277-362 7-93 (104)
72 2kxn_B Transformer-2 protein h 99.8 2.3E-18 7.9E-23 142.0 10.3 86 276-361 43-128 (129)
73 2cqd_A RNA-binding region cont 99.8 5.3E-18 1.8E-22 136.9 12.0 87 275-362 13-99 (116)
74 2fy1_A RNA-binding motif prote 99.8 3.1E-18 1.1E-22 138.6 10.7 84 278-362 6-89 (116)
75 3s7r_A Heterogeneous nuclear r 99.8 4.7E-18 1.6E-22 129.9 11.1 79 277-356 9-87 (87)
76 1p1t_A Cleavage stimulation fa 99.8 9E-19 3.1E-23 138.5 7.3 84 278-361 7-90 (104)
77 2dgw_A Probable RNA-binding pr 99.8 5.6E-18 1.9E-22 130.7 11.5 83 277-362 8-90 (91)
78 3ucg_A Polyadenylate-binding p 99.8 3.8E-18 1.3E-22 130.8 10.5 79 280-359 7-85 (89)
79 2ywk_A Putative RNA-binding pr 99.8 4E-18 1.4E-22 132.4 10.7 81 277-358 14-94 (95)
80 3ulh_A THO complex subunit 4; 99.8 6.5E-18 2.2E-22 134.3 12.1 83 275-358 25-107 (107)
81 3ex7_B RNA-binding protein 8A; 99.8 3.9E-18 1.3E-22 139.7 11.0 88 275-362 18-105 (126)
82 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.1E-17 3.9E-22 132.0 13.2 85 276-362 12-96 (103)
83 2kt5_A RNA and export factor-b 99.8 1E-17 3.6E-22 136.9 13.4 87 275-362 31-117 (124)
84 3n9u_C Cleavage and polyadenyl 99.8 3.4E-18 1.2E-22 145.6 10.8 81 279-359 55-137 (156)
85 2cqp_A RNA-binding protein 12; 99.8 3E-18 1E-22 134.0 9.6 85 276-360 12-96 (98)
86 2khc_A Testis-specific RNP-typ 99.8 2.8E-18 9.6E-23 138.9 9.7 82 276-357 37-118 (118)
87 3s8s_A Histone-lysine N-methyl 99.8 6E-18 2.1E-22 135.6 11.4 84 156-265 3-86 (110)
88 2m2b_A RNA-binding protein 10; 99.8 1.3E-18 4.4E-23 143.8 7.7 86 275-361 19-110 (131)
89 2do0_A HnRNP M, heterogeneous 99.7 1.3E-17 4.4E-22 134.1 13.0 84 277-361 13-96 (114)
90 2dh8_A DAZ-associated protein 99.7 3.7E-18 1.3E-22 135.3 9.6 87 275-362 12-98 (105)
91 1s79_A Lupus LA protein; RRM, 99.7 3E-18 1E-22 135.7 8.9 79 278-358 10-88 (103)
92 2hvz_A Splicing factor, argini 99.7 5.4E-18 1.9E-22 133.4 9.9 98 160-288 1-100 (101)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.3E-18 4.5E-23 136.9 6.3 84 276-361 16-100 (100)
94 1sjq_A Polypyrimidine tract-bi 99.7 3.8E-18 1.3E-22 135.0 8.9 80 277-362 14-95 (105)
95 2ek1_A RNA-binding protein 12; 99.7 2.5E-18 8.6E-23 133.6 7.8 81 278-358 14-94 (95)
96 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.4E-17 4.7E-22 141.6 13.1 87 277-363 37-123 (156)
97 2rs2_A Musashi-1, RNA-binding 99.7 5.2E-18 1.8E-22 135.7 9.5 86 276-362 22-107 (109)
98 2cqg_A TDP-43, TAR DNA-binding 99.7 2.3E-17 7.8E-22 130.2 13.2 85 276-362 12-96 (103)
99 1x4a_A Splicing factor, argini 99.7 2.2E-17 7.4E-22 131.8 12.9 85 276-363 19-103 (109)
100 2lxi_A RNA-binding protein 10; 99.7 2.8E-18 9.4E-23 132.8 7.4 83 159-267 1-85 (91)
101 2jwn_A Embryonic polyadenylate 99.7 2.5E-18 8.5E-23 140.5 7.4 82 279-361 36-117 (124)
102 2mss_A Protein (musashi1); RNA 99.7 2.7E-18 9.2E-23 127.5 6.7 75 281-356 1-75 (75)
103 2dis_A Unnamed protein product 99.7 7.1E-18 2.4E-22 134.5 9.5 84 278-361 7-94 (109)
104 3r27_A HnRNP L, heterogeneous 99.7 9.8E-18 3.3E-22 131.4 10.0 79 276-360 18-98 (100)
105 3lqv_A PRE-mRNA branch site pr 99.7 7.8E-18 2.7E-22 135.7 9.4 105 156-305 5-109 (115)
106 2nlw_A Eukaryotic translation 99.7 8.7E-18 3E-22 133.4 9.5 84 277-362 13-103 (105)
107 2cq4_A RNA binding motif prote 99.7 3.3E-18 1.1E-22 137.7 7.0 82 279-361 25-106 (114)
108 1x4d_A Matrin 3; structural ge 99.7 1E-17 3.5E-22 132.2 9.4 79 277-361 13-94 (102)
109 1x5o_A RNA binding motif, sing 99.7 3.2E-17 1.1E-21 131.8 12.5 83 276-359 22-112 (114)
110 1x4e_A RNA binding motif, sing 99.7 1.7E-18 5.7E-23 131.8 4.6 80 278-357 4-83 (85)
111 1x4b_A Heterogeneous nuclear r 99.7 8.9E-18 3E-22 135.6 9.2 85 277-362 25-109 (116)
112 2ki2_A SS-DNA binding protein 99.7 1.5E-18 5.1E-23 133.6 4.2 82 280-362 2-83 (90)
113 1whw_A Hypothetical protein ri 99.7 3.7E-17 1.3E-21 128.0 12.0 88 157-270 6-93 (99)
114 3pgw_S U1-70K; protein-RNA com 99.7 2.1E-18 7.3E-23 170.2 6.1 85 277-361 100-184 (437)
115 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.8E-18 1.3E-22 127.2 5.9 76 280-356 1-76 (77)
116 3p5t_L Cleavage and polyadenyl 99.7 7.4E-18 2.5E-22 129.9 7.7 82 160-267 2-85 (90)
117 1wex_A Hypothetical protein (r 99.7 2.4E-17 8.3E-22 130.6 10.8 81 276-362 12-94 (104)
118 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-17 4.6E-22 126.5 8.8 73 279-357 7-79 (89)
119 2dnz_A Probable RNA-binding pr 99.7 6.9E-17 2.4E-21 125.4 13.0 86 157-268 3-88 (95)
120 2dnq_A RNA-binding protein 4B; 99.7 4.3E-17 1.5E-21 125.5 11.7 79 277-363 6-84 (90)
121 2fc9_A NCL protein; structure 99.7 2.5E-17 8.6E-22 129.5 10.6 84 276-363 12-95 (101)
122 2cpi_A CCR4-NOT transcription 99.7 1.7E-17 5.7E-22 133.1 9.6 84 278-361 14-103 (111)
123 1why_A Hypothetical protein ri 99.7 5.5E-17 1.9E-21 126.7 12.2 80 277-362 15-96 (97)
124 2lkz_A RNA-binding protein 5; 99.7 5.6E-18 1.9E-22 132.1 6.4 81 158-264 8-94 (95)
125 2a3j_A U1 small nuclear ribonu 99.7 2.6E-17 8.8E-22 135.2 10.6 82 276-360 26-111 (127)
126 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.1E-17 1.1E-21 125.2 10.4 82 158-265 5-86 (87)
127 2err_A Ataxin-2-binding protei 99.7 1.8E-17 6.1E-22 132.5 9.4 84 275-360 25-108 (109)
128 2cq1_A PTB-like protein L; RRM 99.7 5.4E-17 1.8E-21 127.9 11.9 81 276-362 12-94 (101)
129 2dgs_A DAZ-associated protein 99.7 6.6E-17 2.3E-21 126.6 12.4 87 156-269 7-93 (99)
130 2cpx_A Hypothetical protein FL 99.7 7.8E-18 2.7E-22 135.6 7.2 87 276-362 22-108 (115)
131 2x1f_A MRNA 3'-END-processing 99.7 4.5E-17 1.5E-21 126.9 11.2 84 158-267 1-84 (96)
132 2fc8_A NCL protein; structure 99.7 5.1E-17 1.8E-21 127.9 11.5 84 276-362 12-95 (102)
133 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4E-17 1.4E-21 124.0 10.5 82 156-263 4-85 (85)
134 2dgo_A Cytotoxic granule-assoc 99.7 9.9E-17 3.4E-21 129.1 13.3 88 156-269 12-99 (115)
135 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.1E-17 1.4E-21 135.7 11.4 82 275-356 59-140 (140)
136 3md1_A Nuclear and cytoplasmic 99.7 5.2E-17 1.8E-21 122.8 10.9 81 160-266 2-82 (83)
137 2ad9_A Polypyrimidine tract-bi 99.7 2.6E-17 8.7E-22 133.3 9.7 81 276-362 28-110 (119)
138 1wel_A RNA-binding protein 12; 99.7 8.5E-18 2.9E-22 137.5 6.8 83 276-359 22-104 (124)
139 1wez_A HnRNP H', FTP-3, hetero 99.7 1.6E-17 5.5E-22 131.2 8.1 84 277-363 13-96 (102)
140 2cpz_A CUG triplet repeat RNA- 99.7 9.8E-17 3.4E-21 129.2 12.9 89 155-269 21-109 (115)
141 2dnm_A SRP46 splicing factor; 99.7 5.8E-17 2E-21 127.9 11.2 87 157-269 11-97 (103)
142 2cpf_A RNA binding motif prote 99.7 6.3E-17 2.1E-21 126.4 11.2 87 157-269 3-92 (98)
143 1x5t_A Splicing factor 3B subu 99.7 4.5E-17 1.5E-21 126.7 10.3 87 157-269 3-90 (96)
144 1x4h_A RNA-binding protein 28; 99.7 1.2E-16 4E-21 127.7 12.9 88 156-269 12-105 (111)
145 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.2E-17 1.4E-21 128.4 10.2 87 157-269 10-96 (102)
146 2e5j_A Methenyltetrahydrofolat 99.7 7.9E-17 2.7E-21 125.8 11.6 80 277-361 17-96 (97)
147 1x5s_A Cold-inducible RNA-bind 99.7 6.8E-17 2.3E-21 127.2 11.3 87 156-268 9-95 (102)
148 3ns6_A Eukaryotic translation 99.7 1E-17 3.4E-22 131.9 6.4 82 158-265 5-93 (100)
149 1x5u_A Splicing factor 3B subu 99.7 1.1E-16 3.9E-21 126.6 12.6 88 155-268 11-98 (105)
150 2cq0_A Eukaryotic translation 99.7 5.8E-17 2E-21 127.9 10.8 87 156-268 12-98 (103)
151 2do4_A Squamous cell carcinoma 99.7 1.5E-16 5E-21 124.9 13.0 85 156-267 14-98 (100)
152 1x4c_A Splicing factor, argini 99.7 6.5E-17 2.2E-21 128.9 11.1 79 277-362 13-96 (108)
153 2dgt_A RNA-binding protein 30; 99.7 7.6E-17 2.6E-21 124.6 11.2 79 277-363 8-86 (92)
154 1wg5_A Heterogeneous nuclear r 99.7 5.9E-17 2E-21 128.3 10.7 82 277-360 13-95 (104)
155 1x4g_A Nucleolysin TIAR; struc 99.7 6.6E-17 2.3E-21 129.0 10.8 80 277-362 23-102 (109)
156 2xnq_A Nuclear polyadenylated 99.7 8.5E-17 2.9E-21 125.8 11.1 79 275-361 18-97 (97)
157 2cpy_A RNA-binding protein 12; 99.7 1.8E-17 6.2E-22 133.5 7.5 82 277-360 13-95 (114)
158 2cpd_A Apobec-1 stimulating pr 99.7 1.6E-16 5.4E-21 124.5 12.7 81 274-362 10-92 (99)
159 2cqc_A Arginine/serine-rich sp 99.7 9.9E-17 3.4E-21 124.4 11.3 84 155-264 11-94 (95)
160 1p27_B RNA-binding protein 8A; 99.7 7.8E-17 2.7E-21 127.8 10.9 83 158-266 22-104 (106)
161 2cph_A RNA binding motif prote 99.7 1.7E-16 5.9E-21 125.9 13.0 88 156-269 12-101 (107)
162 1fj7_A Nucleolin RBD1, protein 99.7 7.2E-18 2.5E-22 132.6 4.9 85 277-363 15-99 (101)
163 3lqv_A PRE-mRNA branch site pr 99.7 5.6E-17 1.9E-21 130.6 10.2 81 278-361 7-87 (115)
164 2la6_A RNA-binding protein FUS 99.7 7.7E-17 2.6E-21 126.3 10.8 83 155-263 9-99 (99)
165 2dnp_A RNA-binding protein 14; 99.7 9.3E-17 3.2E-21 123.6 10.9 78 277-362 7-84 (90)
166 2d9p_A Polyadenylate-binding p 99.7 1.6E-16 5.4E-21 125.4 12.5 88 155-270 11-98 (103)
167 2db1_A Heterogeneous nuclear r 99.7 2E-17 7E-22 134.1 7.4 81 277-359 15-98 (118)
168 2hvz_A Splicing factor, argini 99.7 2.9E-17 1E-21 129.1 8.1 78 280-362 1-78 (101)
169 2jrs_A RNA-binding protein 39; 99.7 1.3E-16 4.4E-21 127.3 12.0 85 156-266 23-107 (108)
170 2cpj_A Non-POU domain-containi 99.7 6.5E-17 2.2E-21 126.7 10.0 81 275-361 11-91 (99)
171 4a8x_A RNA-binding protein wit 99.7 7.9E-17 2.7E-21 123.1 10.1 83 158-266 3-86 (88)
172 1iqt_A AUF1, heterogeneous nuc 99.7 1E-17 3.6E-22 124.2 5.0 75 281-356 1-75 (75)
173 2krb_A Eukaryotic translation 99.7 1.9E-17 6.6E-22 124.9 6.5 73 280-354 2-81 (81)
174 1nu4_A U1A RNA binding domain; 99.7 3.1E-17 1.1E-21 127.9 7.8 82 277-361 6-91 (97)
175 2dhg_A TRNA selenocysteine ass 99.7 1.9E-16 6.7E-21 125.0 12.4 87 156-269 6-94 (104)
176 2cpe_A RNA-binding protein EWS 99.7 1.3E-16 4.3E-21 128.1 11.3 88 156-269 12-107 (113)
177 2hgl_A HNRPF protein, heteroge 99.7 2.6E-17 8.8E-22 136.8 7.4 80 278-359 43-125 (136)
178 2ytc_A PRE-mRNA-splicing facto 99.7 1.2E-16 4.1E-21 121.4 10.5 76 276-357 9-85 (85)
179 1x4f_A Matrin 3; structural ge 99.7 3.4E-17 1.2E-21 131.2 7.8 80 276-361 22-104 (112)
180 1wf1_A RNA-binding protein RAL 99.7 8.6E-17 2.9E-21 128.6 10.1 96 252-360 5-101 (110)
181 2fy1_A RNA-binding motif prote 99.7 2.1E-16 7.4E-21 127.7 12.5 86 156-268 4-89 (116)
182 1fjc_A Nucleolin RBD2, protein 99.7 4E-17 1.4E-21 127.1 7.8 82 277-363 14-95 (96)
183 2dnh_A Bruno-like 5, RNA bindi 99.7 2.6E-16 9E-21 124.5 12.7 85 157-268 13-100 (105)
184 2e5h_A Zinc finger CCHC-type a 99.7 1E-16 3.5E-21 124.2 10.1 83 155-263 12-94 (94)
185 2lcw_A RNA-binding protein FUS 99.5 1.8E-18 6.1E-23 139.8 0.0 86 277-362 5-98 (116)
186 2jvo_A Nucleolar protein 3; nu 99.7 7.6E-17 2.6E-21 128.7 9.5 80 275-362 27-106 (108)
187 2jvr_A Nucleolar protein 3; RN 99.7 4.3E-17 1.5E-21 130.7 8.0 78 279-360 28-106 (111)
188 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-16 6E-21 125.7 11.5 87 156-268 10-99 (106)
189 2kxn_B Transformer-2 protein h 99.7 1.2E-16 4.1E-21 131.7 10.9 88 154-267 41-128 (129)
190 3ucg_A Polyadenylate-binding p 99.7 1.4E-16 4.9E-21 122.0 10.4 81 159-266 6-86 (89)
191 3q2s_C Cleavage and polyadenyl 99.7 4.2E-17 1.4E-21 147.6 8.6 80 280-359 69-150 (229)
192 2dnn_A RNA-binding protein 12; 99.7 5.4E-17 1.8E-21 129.7 8.2 78 279-359 16-93 (109)
193 1oo0_B CG8781-PA, drosophila Y 99.7 1.3E-16 4.5E-21 127.3 10.5 85 157-267 24-108 (110)
194 2dng_A Eukaryotic translation 99.7 2.3E-16 7.8E-21 124.5 11.6 85 156-268 12-96 (103)
195 1s79_A Lupus LA protein; RRM, 99.7 8.2E-17 2.8E-21 127.4 9.0 81 156-264 8-88 (103)
196 2la4_A Nuclear and cytoplasmic 99.7 6.6E-17 2.3E-21 127.1 8.2 76 278-359 26-101 (101)
197 2xs2_A Deleted in azoospermia- 99.7 4.1E-17 1.4E-21 128.5 7.0 81 278-361 8-88 (102)
198 2kvi_A Nuclear polyadenylated 99.7 9.7E-17 3.3E-21 125.1 8.8 79 276-362 7-86 (96)
199 2lmi_A GRSF-1, G-rich sequence 99.7 2.2E-17 7.6E-22 131.5 5.2 82 277-360 9-93 (107)
200 2div_A TRNA selenocysteine ass 99.7 1.7E-16 5.8E-21 124.2 10.1 84 157-266 7-95 (99)
201 2dgu_A Heterogeneous nuclear r 99.7 2.7E-16 9.2E-21 124.1 11.2 78 277-362 9-86 (103)
202 3s7r_A Heterogeneous nuclear r 99.7 1.9E-16 6.4E-21 120.9 10.0 80 156-262 8-87 (87)
203 1x4e_A RNA binding motif, sing 99.7 7E-17 2.4E-21 122.8 7.5 81 157-263 3-83 (85)
204 3pgw_S U1-70K; protein-RNA com 99.7 1E-16 3.5E-21 158.1 10.7 84 158-267 101-184 (437)
205 4f02_A Polyadenylate-binding p 99.7 2.4E-16 8.1E-21 140.8 12.0 84 277-360 13-96 (213)
206 2m2b_A RNA-binding protein 10; 99.7 1.7E-16 5.9E-21 131.0 10.2 85 157-268 21-111 (131)
207 2dh8_A DAZ-associated protein 99.7 1.7E-16 5.9E-21 125.6 9.8 87 156-269 13-99 (105)
208 1wi8_A EIF-4B, eukaryotic tran 99.7 3.4E-16 1.2E-20 123.7 11.5 85 157-269 13-98 (104)
209 2cq3_A RNA-binding protein 9; 99.7 6.9E-16 2.3E-20 121.7 13.1 86 156-269 12-97 (103)
210 3n9u_C Cleavage and polyadenyl 99.7 1.6E-16 5.5E-21 135.2 10.0 82 158-265 54-137 (156)
211 1p1t_A Cleavage stimulation fa 99.7 1.9E-16 6.4E-21 125.0 9.5 83 158-266 7-89 (104)
212 1sjq_A Polypyrimidine tract-bi 99.7 3.1E-16 1.1E-20 124.0 10.7 82 156-269 13-96 (105)
213 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.8E-16 2.3E-20 121.7 12.7 85 156-268 12-96 (103)
214 1fxl_A Paraneoplastic encephal 99.7 3.9E-16 1.3E-20 132.7 12.1 83 279-361 2-84 (167)
215 2dgv_A HnRNP M, heterogeneous 99.7 4.7E-16 1.6E-20 119.9 11.4 83 157-267 6-88 (92)
216 2hgn_A Heterogeneous nuclear r 99.7 1.9E-17 6.5E-22 138.1 3.7 82 277-361 44-125 (139)
217 1u6f_A Tcubp1, RNA-binding pro 99.7 9.2E-16 3.1E-20 127.6 13.9 89 156-270 39-127 (139)
218 1b7f_A Protein (SXL-lethal pro 99.7 3.3E-16 1.1E-20 133.6 11.4 84 278-361 2-85 (168)
219 2ywk_A Putative RNA-binding pr 99.7 2.8E-16 9.4E-21 122.0 9.9 81 157-264 14-94 (95)
220 2rs2_A Musashi-1, RNA-binding 99.7 2.6E-16 9E-21 125.7 10.0 86 156-268 22-107 (109)
221 2cqh_A IGF-II mRNA-binding pro 99.7 1.6E-16 5.4E-21 123.0 8.4 79 277-362 6-86 (93)
222 2cqd_A RNA-binding region cont 99.7 4.6E-16 1.6E-20 125.4 11.4 85 156-267 14-98 (116)
223 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.9E-16 1E-20 134.8 10.8 86 157-268 70-155 (165)
224 2mss_A Protein (musashi1); RNA 99.7 1.4E-16 4.7E-21 118.2 7.5 75 161-262 1-75 (75)
225 3r27_A HnRNP L, heterogeneous 99.7 6.8E-16 2.3E-20 120.8 11.7 79 156-266 18-98 (100)
226 1whx_A Hypothetical protein ri 99.7 2.5E-16 8.5E-21 126.3 9.4 76 279-360 10-85 (111)
227 3ex7_B RNA-binding protein 8A; 99.7 4.5E-16 1.6E-20 127.3 10.8 86 157-268 20-105 (126)
228 2do0_A HnRNP M, heterogeneous 99.7 1.4E-15 4.9E-20 122.0 13.4 85 157-268 13-97 (114)
229 3ulh_A THO complex subunit 4; 99.7 5.9E-16 2E-20 122.9 11.0 80 157-263 27-106 (107)
230 2dis_A Unnamed protein product 99.7 6.5E-16 2.2E-20 123.0 11.2 86 157-268 6-95 (109)
231 2dgx_A KIAA0430 protein; RRM d 99.7 5.1E-16 1.8E-20 121.0 10.3 80 158-266 8-91 (96)
232 2j8a_A Histone-lysine N-methyl 99.7 1.7E-16 5.9E-21 128.4 7.7 80 280-359 3-96 (136)
233 2cqp_A RNA-binding protein 12; 99.7 1.6E-16 5.6E-21 124.0 7.4 83 158-266 14-96 (98)
234 2kn4_A Immunoglobulin G-bindin 99.7 5.9E-16 2E-20 131.6 11.4 87 157-269 68-154 (158)
235 2ek1_A RNA-binding protein 12; 99.7 1.4E-16 4.8E-21 123.6 6.9 81 158-264 14-94 (95)
236 3egn_A RNA-binding protein 40; 99.7 7.5E-17 2.6E-21 135.1 5.7 84 277-360 43-131 (143)
237 2khc_A Testis-specific RNP-typ 99.7 2.3E-16 7.7E-21 127.6 8.4 82 156-263 37-118 (118)
238 2f3j_A RNA and export factor b 99.6 6E-16 2.1E-20 134.4 11.5 86 275-361 84-169 (177)
239 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.6E-16 5.5E-21 124.8 7.0 83 156-266 16-99 (100)
240 2jwn_A Embryonic polyadenylate 99.6 6.8E-16 2.3E-20 125.9 10.8 83 159-268 36-118 (124)
241 2cqg_A TDP-43, TAR DNA-binding 99.6 1.7E-15 5.8E-20 119.4 12.7 84 157-268 13-96 (103)
242 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-16 3.7E-21 130.7 5.9 80 278-359 22-105 (123)
243 2hgm_A HNRPF protein, heteroge 99.6 1.7E-16 5.9E-21 129.9 7.0 79 278-359 41-121 (126)
244 2cpx_A Hypothetical protein FL 99.6 4E-16 1.4E-20 125.5 8.9 88 156-269 22-109 (115)
245 1x4b_A Heterogeneous nuclear r 99.6 3.7E-16 1.3E-20 126.0 8.6 85 158-269 26-110 (116)
246 1wg5_A Heterogeneous nuclear r 99.6 8.2E-16 2.8E-20 121.7 10.4 82 157-266 13-95 (104)
247 1x5p_A Negative elongation fac 99.6 1.6E-15 5.3E-20 118.4 11.7 78 277-362 13-90 (97)
248 2diu_A KIAA0430 protein; struc 99.6 6.8E-16 2.3E-20 118.3 9.3 73 279-361 8-86 (96)
249 2kt5_A RNA and export factor-b 99.6 1.3E-15 4.3E-20 124.4 11.6 85 157-268 33-117 (124)
250 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2E-16 6.7E-21 117.8 6.2 76 160-262 1-76 (77)
251 1x4a_A Splicing factor, argini 99.6 1.8E-15 6.1E-20 120.6 12.2 84 156-268 19-102 (109)
252 2ki2_A SS-DNA binding protein 99.6 9.7E-17 3.3E-21 123.3 4.6 81 160-267 2-82 (90)
253 2krb_A Eukaryotic translation 99.6 3.1E-16 1.1E-20 118.2 7.2 74 159-260 1-81 (81)
254 1fj7_A Nucleolin RBD1, protein 99.6 1.6E-16 5.6E-21 124.8 5.9 84 156-267 14-97 (101)
255 3q2s_C Cleavage and polyadenyl 99.6 2.6E-16 8.9E-21 142.3 8.1 82 158-265 67-150 (229)
256 2dgw_A Probable RNA-binding pr 99.6 9.8E-16 3.3E-20 118.0 10.1 81 157-266 8-88 (91)
257 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.5E-15 5E-20 129.1 12.2 85 157-267 37-121 (156)
258 2nlw_A Eukaryotic translation 99.6 9.7E-16 3.3E-20 121.5 10.1 81 158-266 14-101 (105)
259 2ad9_A Polypyrimidine tract-bi 99.6 2E-15 6.9E-20 122.1 12.0 83 155-269 27-111 (119)
260 2cq2_A Hypothetical protein LO 99.6 4.5E-16 1.5E-20 124.8 8.0 79 277-361 23-108 (114)
261 2e44_A Insulin-like growth fac 99.6 1E-15 3.6E-20 119.0 9.8 79 278-360 14-93 (96)
262 3d2w_A TAR DNA-binding protein 99.6 8.7E-16 3E-20 118.1 9.0 77 277-362 9-87 (89)
263 2jvr_A Nucleolar protein 3; RN 99.6 7.6E-16 2.6E-20 123.4 8.7 81 155-265 24-105 (111)
264 2fc9_A NCL protein; structure 99.6 1.6E-15 5.4E-20 119.1 10.5 83 156-268 12-94 (101)
265 2cq4_A RNA binding motif prote 99.6 5.9E-16 2E-20 124.4 8.2 80 159-265 25-104 (114)
266 2e5g_A U6 snRNA-specific termi 99.6 1.2E-15 4.1E-20 118.3 9.6 77 279-361 8-84 (94)
267 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.1E-15 3.6E-20 127.1 10.0 80 157-262 61-140 (140)
268 1x5o_A RNA binding motif, sing 99.6 2.8E-15 9.6E-20 120.4 12.1 82 157-265 23-112 (114)
269 1wg1_A KIAA1579 protein, homol 99.6 7.1E-16 2.4E-20 118.1 8.2 76 278-360 4-79 (88)
270 2dnq_A RNA-binding protein 4B; 99.6 3.6E-15 1.2E-19 114.6 12.1 79 156-268 5-83 (90)
271 3zzy_A Polypyrimidine tract-bi 99.6 2.2E-15 7.4E-20 123.6 11.5 76 280-360 29-107 (130)
272 1wex_A Hypothetical protein (r 99.6 4.1E-15 1.4E-19 117.8 12.7 81 156-268 12-94 (104)
273 2lea_A Serine/arginine-rich sp 99.6 4.8E-16 1.6E-20 129.1 7.7 87 157-269 45-131 (135)
274 2wbr_A GW182, gawky, LD47780P; 99.6 1.2E-15 4.3E-20 115.6 9.2 73 158-262 6-78 (89)
275 2cpi_A CCR4-NOT transcription 99.6 7.8E-16 2.7E-20 123.3 8.5 84 157-266 13-102 (111)
276 1x4d_A Matrin 3; structural ge 99.6 1.3E-15 4.6E-20 120.0 9.7 78 157-266 13-93 (102)
277 2cpy_A RNA-binding protein 12; 99.6 4.2E-16 1.4E-20 125.4 6.9 83 156-266 12-95 (114)
278 2e5j_A Methenyltetrahydrofolat 99.6 3.3E-15 1.1E-19 116.5 11.5 80 156-266 16-95 (97)
279 2err_A Ataxin-2-binding protei 99.6 1.3E-15 4.5E-20 121.6 9.3 83 155-265 25-107 (109)
280 2cq1_A PTB-like protein L; RRM 99.6 3.8E-15 1.3E-19 117.3 11.6 82 156-269 12-95 (101)
281 2a3j_A U1 small nuclear ribonu 99.6 2.3E-15 7.8E-20 123.6 10.7 81 157-266 27-111 (127)
282 1wez_A HnRNP H', FTP-3, hetero 99.6 7.9E-16 2.7E-20 121.5 7.6 82 156-266 12-93 (102)
283 1x4g_A Nucleolysin TIAR; struc 99.6 3.9E-15 1.3E-19 118.7 11.6 82 155-268 21-102 (109)
284 1sjr_A Polypyrimidine tract-bi 99.6 1.9E-15 6.4E-20 128.6 10.2 77 280-360 47-125 (164)
285 1iqt_A AUF1, heterogeneous nuc 99.6 4.9E-16 1.7E-20 115.1 5.9 75 161-262 1-75 (75)
286 1l3k_A Heterogeneous nuclear r 99.6 2.5E-15 8.5E-20 131.5 11.3 83 277-360 11-93 (196)
287 2hgl_A HNRPF protein, heteroge 99.6 8.7E-16 3E-20 127.6 7.8 80 157-264 42-124 (136)
288 2pe8_A Splicing factor 45; RRM 99.6 4.4E-15 1.5E-19 117.8 11.5 82 277-358 6-93 (105)
289 2la4_A Nuclear and cytoplasmic 99.6 2.1E-15 7.1E-20 118.4 9.5 77 157-265 25-101 (101)
290 1why_A Hypothetical protein ri 99.6 4.3E-15 1.5E-19 115.8 11.2 80 155-266 13-94 (97)
291 2voo_A Lupus LA protein; RNA-b 99.6 6.9E-15 2.4E-19 129.5 13.9 121 236-359 63-187 (193)
292 2cpd_A Apobec-1 stimulating pr 99.6 7.6E-15 2.6E-19 114.8 12.7 77 157-267 13-91 (99)
293 2fc8_A NCL protein; structure 99.6 2.4E-15 8.3E-20 118.2 9.8 84 156-268 12-95 (102)
294 2db1_A Heterogeneous nuclear r 99.6 9.4E-16 3.2E-20 124.3 7.6 80 157-264 15-97 (118)
295 1x4c_A Splicing factor, argini 99.6 5.8E-15 2E-19 117.5 11.9 80 157-269 13-97 (108)
296 3beg_B Splicing factor, argini 99.6 1.2E-15 4E-20 123.1 7.9 77 278-361 15-96 (115)
297 2cpj_A Non-POU domain-containi 99.6 4.2E-15 1.4E-19 116.3 10.9 80 156-267 12-91 (99)
298 2dnp_A RNA-binding protein 14; 99.6 5.7E-15 1.9E-19 113.5 11.3 79 156-268 6-84 (90)
299 2e5i_A Heterogeneous nuclear r 99.6 7.1E-15 2.4E-19 119.8 12.1 74 281-360 27-103 (124)
300 1x4f_A Matrin 3; structural ge 99.6 2.7E-15 9.4E-20 120.0 9.4 80 156-267 22-104 (112)
301 1nu4_A U1A RNA binding domain; 99.6 1.7E-15 5.9E-20 117.9 7.9 82 156-266 5-90 (97)
302 2ytc_A PRE-mRNA-splicing facto 99.6 4.7E-15 1.6E-19 112.5 10.1 75 157-263 10-85 (85)
303 1wel_A RNA-binding protein 12; 99.6 1E-15 3.4E-20 125.1 6.7 82 156-264 22-103 (124)
304 2xnq_A Nuclear polyadenylated 99.6 7.3E-15 2.5E-19 114.7 11.1 78 154-265 17-95 (97)
305 2lmi_A GRSF-1, G-rich sequence 99.6 8.3E-16 2.8E-20 122.3 5.7 81 157-265 9-92 (107)
306 3md3_A Nuclear and cytoplasmic 99.6 4.5E-15 1.5E-19 126.0 10.5 80 281-361 2-81 (166)
307 3tyt_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 132.7 10.2 77 278-359 3-80 (205)
308 2qfj_A FBP-interacting repress 99.6 3.7E-15 1.3E-19 132.4 10.2 82 279-360 28-109 (216)
309 2jvo_A Nucleolar protein 3; nu 99.6 5.8E-15 2E-19 117.7 10.2 78 156-267 28-105 (108)
310 2cqh_A IGF-II mRNA-binding pro 99.6 4.8E-15 1.6E-19 114.5 8.9 80 157-269 6-87 (93)
311 1whx_A Hypothetical protein ri 99.6 7.2E-15 2.5E-19 117.7 10.2 77 158-266 9-85 (111)
312 1fjc_A Nucleolin RBD2, protein 99.6 3.2E-15 1.1E-19 116.2 7.7 79 158-267 15-93 (96)
313 2dgu_A Heterogeneous nuclear r 99.6 1.3E-14 4.3E-19 114.5 11.1 78 158-269 10-87 (103)
314 2lcw_A RNA-binding protein FUS 99.4 1.6E-16 5.5E-21 128.2 0.0 86 157-268 5-98 (116)
315 2hzc_A Splicing factor U2AF 65 99.6 4.5E-15 1.5E-19 113.0 8.0 71 278-355 5-86 (87)
316 2dgt_A RNA-binding protein 30; 99.6 1.7E-14 6E-19 111.2 11.4 79 156-268 7-85 (92)
317 3nmr_A Cugbp ELAV-like family 99.6 1.3E-14 4.6E-19 124.2 11.7 83 279-361 3-90 (175)
318 2dnn_A RNA-binding protein 12; 99.6 5.8E-15 2E-19 117.9 8.6 77 159-264 16-92 (109)
319 2kvi_A Nuclear polyadenylated 99.6 7.4E-15 2.5E-19 114.3 8.8 78 156-267 7-85 (96)
320 2dnl_A Cytoplasmic polyadenyla 99.6 3.6E-15 1.2E-19 119.9 7.0 74 278-354 7-83 (114)
321 2e5g_A U6 snRNA-specific termi 99.6 2E-14 6.8E-19 111.4 10.9 79 158-268 7-85 (94)
322 1wf0_A TDP-43, TAR DNA-binding 99.6 2.6E-15 8.8E-20 114.9 5.6 78 278-362 4-81 (88)
323 3egn_A RNA-binding protein 40; 99.6 2.6E-15 8.8E-20 125.6 6.0 92 156-268 42-133 (143)
324 2dha_A FLJ20171 protein; RRM d 99.6 4.1E-15 1.4E-19 121.3 7.1 80 157-264 21-104 (123)
325 2bz2_A Negative elongation fac 99.6 9.8E-15 3.3E-19 118.8 9.2 78 277-362 37-114 (121)
326 1wf1_A RNA-binding protein RAL 99.6 1.9E-14 6.4E-19 114.9 10.6 76 158-267 26-102 (110)
327 2e44_A Insulin-like growth fac 99.6 1.6E-14 5.5E-19 112.2 9.6 80 158-266 14-93 (96)
328 2i2y_A Fusion protein consists 99.5 1.5E-14 5E-19 122.0 10.0 79 156-265 70-148 (150)
329 2cjk_A Nuclear polyadenylated 99.5 6E-15 2.1E-19 125.6 7.3 80 279-360 3-82 (167)
330 2xs2_A Deleted in azoospermia- 99.5 4.9E-15 1.7E-19 116.5 6.0 81 158-267 8-88 (102)
331 2hgm_A HNRPF protein, heteroge 99.5 7.3E-15 2.5E-19 120.2 7.2 79 157-264 40-120 (126)
332 2f3j_A RNA and export factor b 99.5 1.4E-14 4.9E-19 125.7 9.3 83 157-266 86-168 (177)
333 2hgn_A Heterogeneous nuclear r 99.5 3.6E-15 1.2E-19 124.2 5.3 82 157-267 44-125 (139)
334 3u1l_A PRE-mRNA-splicing facto 99.5 1.7E-14 5.8E-19 130.5 9.8 105 248-362 107-232 (240)
335 2j8a_A Histone-lysine N-methyl 99.5 1E-14 3.4E-19 118.1 7.0 78 160-263 3-94 (136)
336 1x5p_A Negative elongation fac 99.5 9.2E-14 3.1E-18 108.2 12.0 79 156-268 12-90 (97)
337 1wg1_A KIAA1579 protein, homol 99.5 2.5E-14 8.4E-19 109.5 8.3 75 158-265 4-78 (88)
338 3pgw_A U1-A; protein-RNA compl 99.5 4.2E-14 1.4E-18 131.2 11.5 81 277-360 7-91 (282)
339 2hzc_A Splicing factor U2AF 65 99.5 2.6E-14 8.9E-19 108.8 8.3 71 158-261 5-86 (87)
340 2dit_A HIV TAT specific factor 99.5 8.9E-14 3E-18 111.4 11.8 81 277-361 13-104 (112)
341 2g4b_A Splicing factor U2AF 65 99.5 5.3E-14 1.8E-18 120.3 10.7 79 158-262 93-171 (172)
342 3v4m_A Splicing factor U2AF 65 99.5 2.9E-14 1E-18 113.0 8.0 81 278-358 4-96 (105)
343 2diu_A KIAA0430 protein; struc 99.5 6.6E-14 2.3E-18 107.2 9.6 73 159-267 8-86 (96)
344 2yh0_A Splicing factor U2AF 65 99.5 6.9E-14 2.3E-18 122.4 11.1 86 156-267 111-196 (198)
345 2cq2_A Hypothetical protein LO 99.5 5.4E-14 1.8E-18 112.7 9.4 77 157-265 23-106 (114)
346 3d2w_A TAR DNA-binding protein 99.5 5.3E-14 1.8E-18 108.0 9.0 76 156-266 8-85 (89)
347 3beg_B Splicing factor, argini 99.5 4.3E-14 1.5E-18 113.8 8.3 77 158-267 15-96 (115)
348 2dnl_A Cytoplasmic polyadenyla 99.5 8.7E-14 3E-18 111.8 9.5 77 158-263 7-86 (114)
349 2adc_A Polypyrimidine tract-bi 99.5 6.4E-14 2.2E-18 126.4 9.5 78 277-359 32-110 (229)
350 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5E-18 111.2 10.2 81 278-358 19-108 (118)
351 1sjr_A Polypyrimidine tract-bi 99.5 1.8E-13 6.3E-18 116.3 11.1 79 159-267 46-126 (164)
352 1jmt_A Splicing factor U2AF 35 99.5 2.8E-14 9.7E-19 112.9 5.2 72 284-356 20-103 (104)
353 3zzy_A Polypyrimidine tract-bi 99.5 2.6E-13 8.9E-18 111.2 10.7 78 159-267 28-108 (130)
354 1fje_B Nucleolin RBD12, protei 99.5 1.7E-14 5.8E-19 124.0 3.6 83 277-361 11-93 (175)
355 1wf0_A TDP-43, TAR DNA-binding 99.5 7.6E-14 2.6E-18 106.6 6.6 78 158-268 4-81 (88)
356 1qm9_A Polypyrimidine tract-bi 99.5 8.5E-14 2.9E-18 122.2 7.6 76 279-359 3-79 (198)
357 2pe8_A Splicing factor 45; RRM 99.4 4.9E-13 1.7E-17 105.9 10.7 83 156-264 5-93 (105)
358 2e5i_A Heterogeneous nuclear r 99.4 6.8E-13 2.3E-17 108.1 11.7 75 161-267 27-104 (124)
359 3sde_A Paraspeckle component 1 99.4 2.4E-13 8.2E-18 125.1 10.0 78 276-359 19-96 (261)
360 2bz2_A Negative elongation fac 99.4 3.9E-13 1.3E-17 109.3 9.8 78 156-267 36-113 (121)
361 2voo_A Lupus LA protein; RNA-b 99.4 3.6E-13 1.2E-17 118.4 9.8 79 159-265 109-187 (193)
362 3u1l_A PRE-mRNA-splicing facto 99.4 1.2E-12 4E-17 118.4 9.2 78 157-266 132-230 (240)
363 2d9o_A DNAJ (HSP40) homolog, s 99.4 5.6E-12 1.9E-16 98.8 11.1 67 289-362 27-93 (100)
364 2dit_A HIV TAT specific factor 99.3 6.4E-12 2.2E-16 100.5 11.2 84 154-267 10-104 (112)
365 3s6e_A RNA-binding protein 39; 99.3 6.5E-12 2.2E-16 100.8 8.7 77 278-358 6-92 (114)
366 3tht_A Alkylated DNA repair pr 99.3 6.9E-12 2.4E-16 119.2 9.2 77 276-358 15-98 (345)
367 3v4m_A Splicing factor U2AF 65 99.3 1.4E-11 4.9E-16 97.4 8.7 80 158-263 4-95 (105)
368 1jmt_A Splicing factor U2AF 35 99.2 3.3E-12 1.1E-16 100.9 4.3 72 164-262 20-103 (104)
369 3ue2_A Poly(U)-binding-splicin 99.2 2.9E-11 1E-15 97.6 8.8 81 157-263 18-107 (118)
370 2d9o_A DNAJ (HSP40) homolog, s 99.1 8.1E-10 2.8E-14 86.4 11.8 76 159-267 10-92 (100)
371 3tht_A Alkylated DNA repair pr 99.1 2.1E-10 7.3E-15 109.0 9.3 76 156-263 15-97 (345)
372 1owx_A Lupus LA protein, SS-B, 99.1 4.2E-10 1.4E-14 90.7 8.1 78 274-357 13-94 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 6.2E-10 2.1E-14 84.4 7.8 74 277-359 5-86 (91)
374 3s6e_A RNA-binding protein 39; 99.0 1.9E-09 6.6E-14 86.3 8.9 78 156-263 4-91 (114)
375 3dxb_A Thioredoxin N-terminall 98.9 4.1E-09 1.4E-13 94.2 11.3 68 290-357 140-211 (222)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 7.4E-09 2.5E-13 78.5 7.5 74 157-265 5-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 3.7E-09 1.3E-13 80.5 4.8 72 276-356 12-92 (95)
378 1owx_A Lupus LA protein, SS-B, 98.7 4.5E-08 1.6E-12 78.7 9.1 74 157-262 16-93 (121)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 3.7E-08 1.3E-12 75.0 7.0 73 156-263 12-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.5 1.6E-07 5.5E-12 83.7 8.3 70 172-263 142-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.5 7.1E-07 2.4E-11 69.4 8.6 71 279-355 21-96 (117)
382 2dhx_A Poly (ADP-ribose) polym 97.9 6.8E-05 2.3E-09 57.7 9.5 88 158-292 7-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.9 5.8E-05 2E-09 58.7 9.0 72 158-261 20-96 (117)
384 1uw4_A UPF3X; nonsense mediate 97.6 0.00036 1.2E-08 52.9 8.6 78 280-357 2-86 (91)
385 1wey_A Calcipressin 1; structu 97.3 0.00054 1.8E-08 52.9 7.0 75 279-359 5-84 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.3 0.0028 9.4E-08 48.8 10.3 73 279-360 8-85 (104)
387 1wey_A Calcipressin 1; structu 97.0 0.0034 1.2E-07 48.4 8.3 76 159-266 5-85 (104)
388 1uw4_A UPF3X; nonsense mediate 96.9 0.0036 1.2E-07 47.3 7.5 70 160-253 2-71 (91)
389 1wwh_A Nucleoporin 35, nucleop 96.5 0.014 4.7E-07 46.2 8.9 71 279-357 24-95 (119)
390 2l08_A Regulator of nonsense t 96.5 0.003 1E-07 48.1 4.9 78 280-357 10-94 (97)
391 1whv_A Poly(A)-specific ribonu 96.2 0.012 4.1E-07 44.7 6.4 58 156-248 13-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 96.1 0.014 4.6E-07 46.3 6.6 71 159-263 24-95 (119)
393 3ctr_A Poly(A)-specific ribonu 95.9 0.01 3.5E-07 45.2 5.0 53 281-342 8-60 (101)
394 1whv_A Poly(A)-specific ribonu 95.8 0.026 8.9E-07 42.9 6.7 53 281-342 18-70 (100)
395 2l08_A Regulator of nonsense t 95.0 0.016 5.6E-07 44.1 3.5 71 159-253 9-79 (97)
396 3ctr_A Poly(A)-specific ribonu 94.5 0.041 1.4E-06 41.9 4.3 53 161-248 8-60 (101)
397 3p3d_A Nucleoporin 53; structu 94.1 0.056 1.9E-06 43.4 4.7 76 281-358 9-98 (132)
398 3p3d_A Nucleoporin 53; structu 93.6 0.1 3.4E-06 41.9 5.2 90 159-263 7-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 92.9 0.054 1.9E-06 53.0 3.2 57 158-246 52-108 (464)
400 3pq1_A Poly(A) RNA polymerase; 92.5 0.066 2.2E-06 52.4 3.3 53 281-339 55-107 (464)
401 3d45_A Poly(A)-specific ribonu 73.7 7.1 0.00024 38.5 7.4 54 281-343 442-495 (507)
402 3d45_A Poly(A)-specific ribonu 73.1 9.8 0.00034 37.5 8.3 55 159-248 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 65.5 14 0.00048 25.9 5.7 59 290-357 12-75 (76)
404 4eyt_A Telomerase associated p 38.1 1.2E+02 0.004 22.3 8.2 56 278-341 11-66 (129)
405 2i9x_A Putative septation prot 27.2 80 0.0027 23.0 4.3 26 305-330 5-30 (87)
406 2i9z_A Putative septation prot 23.6 1E+02 0.0034 23.4 4.3 26 305-330 5-30 (105)
407 2ia9_A Putative septation prot 23.4 1E+02 0.0034 23.2 4.3 26 305-330 5-30 (100)
408 4e8u_A Putative uncharacterize 20.6 1.8E+02 0.0061 24.1 5.6 56 281-339 14-81 (172)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9.5e-35 Score=260.92 Aligned_cols=169 Identities=27% Similarity=0.402 Sum_probs=153.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+.+||||||||+++++++|+++|++||.|..++ ++++..+++++|||||+|.+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~--------------------------i~~d~~tg~~~G~afV~F~~~ 67 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIR--------------------------VCRDMITRRSLGYAYVNFQQP 67 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTTCCEEEEEEEEESSH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE--------------------------EecccCCCCccccccceeCCH
Confidence 568999999999999999999999999999987 788889999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET 317 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~ 317 (365)
++|.+|+..+++..+.|+.|+|.++...... ......+|||+|||+.+++++|+++|+.||.|..|+|+++.
T Consensus 68 ~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-- 139 (213)
T 4f02_A 68 ADAERALDTMNFDVIKGKPVRIMWSQRDPSL------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-- 139 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCTHH------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--
T ss_pred HHHHHHHHHhhhhhcCCcccccccccccccc------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--
Confidence 9999999999999999999999987654321 12233589999999999999999999999999999999985
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 318 GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 318 ~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
+.++|||||+|.+.++|.+||..|||..|+||+|+|.||.++.
T Consensus 140 ~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 140 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 4579999999999999999999999999999999999998764
No 2
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.3e-34 Score=244.99 Aligned_cols=165 Identities=27% Similarity=0.536 Sum_probs=153.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+.++|||+|||+++++++|+++|+.||.|..+. ++.+..+++++|||||+|.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~~ 55 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCR--------------------------IMRDYKTGYSYGYAFVDFTSE 55 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEE--------------------------CCEETTTTEECSEEEEEESSH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EEEeCCCCccceEEEEEECCH
Confidence 468999999999999999999999999998887 677778999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET 317 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~ 317 (365)
++|.+|+..|+|..+.|+.|+|.++.+.... .+.++|||+|||..+++++|+++|+.||.|..++++++..+
T Consensus 56 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~--------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~ 127 (168)
T 1b7f_A 56 MDSQRAIKVLNGITVRNKRLKVSYARPGGES--------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 127 (168)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCSST--------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT
T ss_pred HHHHHHHHhcCCCEeCCcEEEEEecCCCccc--------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCC
Confidence 9999999999999999999999998765432 23459999999999999999999999999999999999889
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCCccCC--eeEEEEEc
Q 017842 318 GRSRGFGFVTMSSETELNDAIAALDGQNLDG--RAIRVNVA 356 (365)
Q Consensus 318 ~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g--r~l~V~~a 356 (365)
|+++|||||+|.+.++|.+|+..|||..+.| ++|+|.||
T Consensus 128 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 128 GRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999999999999988 99999986
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=244.40 Aligned_cols=166 Identities=26% Similarity=0.550 Sum_probs=151.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
|+|||+|||+++++++|+++|+.||.|..+. ++.+. .++++|||||+|.+.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~--------------------------i~~~~-~~~~~g~afV~f~~~~~ 53 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIK--------------------------IMIDK-NNKNVNYAFVEYHQSHD 53 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEE--------------------------EECCC-C-CCEEEEEEEESSHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEE--------------------------EEECC-CCCCCCEEEEEeCCHHH
Confidence 6899999999999999999999999999887 55554 46789999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCC
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR 319 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~ 319 (365)
|.+|+..|+|..+.|+.|+|.++.+.... ...+.++|||+|||+.+++++|+++|+.||.|..++++++..+|.
T Consensus 54 a~~A~~~l~~~~~~g~~i~v~~~~~~~~~------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 54 ANIALQTLNGKQIENNIVKINWAFQSQQS------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCCCCC------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred HHHHHHHcCCCccCCCeeEEEEcCCCCCC------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 99999999999999999999998765432 234566999999999999999999999999999999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 320 SRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 320 ~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
++|||||+|.+.++|.+|+..|||..++|++|+|.||+.
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999999999863
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.4e-34 Score=243.08 Aligned_cols=164 Identities=31% Similarity=0.562 Sum_probs=152.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||+|||+++++++|+++|+.||.|..+. ++.+..++.++|||||+|.+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~--------------------------~~~~~~~~~~~g~afV~f~~~~ 55 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--------------------------LVRDKITGQSLGYGFVNYIDPK 55 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEECTTTCCEEEEEEEEESSHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEeCCCCCcceeEEEEEECCHH
Confidence 57999999999999999999999999999887 7778789999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG 318 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~ 318 (365)
+|.+|+..|+|..+.|+.|+|.++.+... ....++|||+|||+.+++++|+++|+.||.|..++++++..+|
T Consensus 56 ~A~~a~~~l~~~~~~g~~l~v~~~~~~~~--------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 127 (167)
T 1fxl_A 56 DAEKAINTLNGLRLQTKTIKVSYARPSSA--------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 127 (167)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCCG--------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred HHHHHHHHcCCCccCCceEEEEecCCCcc--------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC
Confidence 99999999999999999999999876542 2234589999999999999999999999999999999998899
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCCccCCee--EEEEEc
Q 017842 319 RSRGFGFVTMSSETELNDAIAALDGQNLDGRA--IRVNVA 356 (365)
Q Consensus 319 ~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~--l~V~~a 356 (365)
+++|||||+|.+.++|.+|+..|||..+.|+. |+|.||
T Consensus 128 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 128 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999999999999999975 888886
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.9e-34 Score=250.57 Aligned_cols=177 Identities=31% Similarity=0.535 Sum_probs=152.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+++|+.||.|..+. ++.+..++.++|||||+|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~ 63 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV--------------------------VMRDPNTKRSRGFGFVTYA 63 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTTCCEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EEEcCCCCCccceEEEEeC
Confidence 34578999999999999999999999999999887 7788889999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR 315 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~ 315 (365)
+.++|.+|+.. ++..+.|+.|.|.++.+...... +....+.++|||+|||+.+++++|+++|+.||.|..|+|+++.
T Consensus 64 ~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~--~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 64 TVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQR--PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp SHHHHHHHHHT-CSCEETTEECEEEECCC-------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CHHHHHHHHhc-CCCEECCEEeeeecccCcccccc--cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 99999999987 99999999999999876543321 2233455799999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 316 ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 316 ~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
.+|.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.||.++...
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 8999999999999999999999984 899999999999999987654
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.3e-34 Score=254.62 Aligned_cols=179 Identities=22% Similarity=0.424 Sum_probs=156.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+++|+.||.|..+. ++.+..+++++|||||.|.+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~~~ 80 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSID--------------------------MSWDSVTMKHKGFAFVEYEVP 80 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEE--------------------------ECCC-CC-CCCSEEEEEESSH
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EeecCCCCccCceEEEEeCCH
Confidence 367999999999999999999999999999887 667777899999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC---CCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEee
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER---APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 314 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~---~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d 314 (365)
++|.+|+..|+|..|.|+.|+|.++......... ........++|||+|||+.+++++|+++|+.||.|..|+|+++
T Consensus 81 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 160 (216)
T 2qfj_A 81 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD 160 (216)
T ss_dssp HHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC
T ss_pred HHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec
Confidence 9999999999999999999999887654321100 0011234569999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 315 RETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 315 ~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
..+|+++|||||+|.+.++|.+|+..|||..|+|++|+|.|+.+++.+
T Consensus 161 ~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 161 PTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999999999999999999999999999999988654
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.9e-34 Score=246.59 Aligned_cols=166 Identities=31% Similarity=0.584 Sum_probs=151.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+.++|||+|||+++++++|+++|+.||.|..+. ++.+..+|+++|||||+|.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~~~ 55 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLK--------------------------IMKDPATGRSRGFGFLSFEKP 55 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEE--------------------------CCCCTTTSSCCSCEEEEESST
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EEECCCCCCccceEEEEEccH
Confidence 467999999999999999999999999999887 777878999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET 317 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~ 317 (365)
++|.+|+. ++..++|+.|.|.++.+... ..+.++|||+|||+.+++++|+++|+.||.|..|++++++.+
T Consensus 56 ~~a~~A~~--~~~~~~g~~i~v~~~~~~~~--------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~ 125 (167)
T 2cjk_A 56 SSVDEVVK--TQHILDGKVIDPKRAIPRDE--------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT 125 (167)
T ss_dssp HHHHHHHH--SCCEETTEECCCEECCCHHH--------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS
T ss_pred HHHHHHHh--cccccCCeEcccccccchhh--------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC
Confidence 99999998 46789999999998765432 223459999999999999999999999999999999999889
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 318 GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 318 ~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
|.++|||||+|.+.++|.+|+. ++|..++|++|+|.||.+|.
T Consensus 126 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 126 GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 9999999999999999999998 89999999999999998863
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.4e-32 Score=242.65 Aligned_cols=183 Identities=20% Similarity=0.391 Sum_probs=150.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+++|+.||.|..+.+. . ...+.+...++++|||||+|.+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~----~-----------------~~~v~~~~~~~~~g~afV~F~~~ 61 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQA----P-----------------GNPVLAVQINQDKNFAFLEFRSV 61 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSS----S-----------------SCSEEEEEEETTTTEEEEEESCS
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccC----C-----------------CCceEEeEecCCCCEEEEEeCCH
Confidence 46899999999999999999999999533211000 0 00011111346799999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC------------CCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER------------APRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGK 305 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~ 305 (365)
++|.+|+ .|||..|.|+.|+|.++......... ......+.++|||+|||+.+++++|+++|+.||.
T Consensus 62 ~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 140 (198)
T 2yh0_A 62 DETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 140 (198)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC
T ss_pred HHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 9999999 78999999999999988765332211 1112245689999999999999999999999999
Q ss_pred eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 306 VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 306 V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
|..|++.+++.+|.++|||||+|.+.++|.+|+..|||..++|++|+|.||.++.++
T Consensus 141 v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 141 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999999889999999999999999999999999999999999999999988765
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.9e-32 Score=235.44 Aligned_cols=166 Identities=24% Similarity=0.399 Sum_probs=147.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCC--CccceEEEEeC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETD--RSRGFGFVTMS 235 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~afV~f~ 235 (365)
+.++|||+|||+++++++|+++|++||.|..++ ++.+..++ +++|||||+|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~~~g~afV~f~ 55 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEIN--------------------------VLRDRSQNPPQSKGCCFVTFY 55 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEEECSSSSCEEEEEEEEEES
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EEecCCCCCCCcceEEEEEEC
Confidence 468999999999999999999999999999887 66777676 89999999999
Q ss_pred CHHHHHHHHHHHccCccc---CeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEE
Q 017842 236 TVEEAEKAVEMFHRYDID---GRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVV 312 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~---gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~ 312 (365)
+.++|.+|+..|+|..+. ++.+.+.++.+.... ....++|||+|||+.+++++|+++|+.||.|..|+++
T Consensus 56 ~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~ 128 (175)
T 3nmr_A 56 TRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRIL 128 (175)
T ss_dssp SHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS-------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CHHHHHHHHHHhcCcEEccCCccceEEccccccccc-------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEE
Confidence 999999999999998876 688888877654332 2234599999999999999999999999999999999
Q ss_pred eeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC---CeeEEEEEcc
Q 017842 313 YDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD---GRAIRVNVAE 357 (365)
Q Consensus 313 ~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~---gr~l~V~~a~ 357 (365)
++. +|.++|||||+|.+.++|.+|+..|||..+. ||+|+|.||.
T Consensus 129 ~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 129 RGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp ECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred ECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 995 5899999999999999999999999998775 4999999984
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.5e-32 Score=235.63 Aligned_cols=159 Identities=23% Similarity=0.491 Sum_probs=142.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHcc----C-------CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCc
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKA----G-------TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRS 226 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
+.++|||+|||+++++++|+++|+.| | .|..+. .+++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~--------------------------------~~~~ 50 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ--------------------------------INQD 50 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE--------------------------------EETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE--------------------------------ecCC
Confidence 46899999999999999999999999 5 444433 2356
Q ss_pred cceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCe
Q 017842 227 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKV 306 (365)
Q Consensus 227 ~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V 306 (365)
+|||||+|.+.++|.+|+ .+||..+.|+.|+|.++...... ...++|||+|||+.+++++|+++|+.||.|
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~--------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 121 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPL--------PGAHKLFIGGLPNYLNDDQVKELLTSFGPL 121 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCC--------TTTTCEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCC--------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCc
Confidence 899999999999999999 78999999999999987654332 224599999999999999999999999999
Q ss_pred EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 307 VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 307 ~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..|++++++.+|+++|||||+|.+.++|.+|+..|||..++|++|+|.||.
T Consensus 122 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 122 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999998899999999999999999999999999999999999999974
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.4e-32 Score=238.22 Aligned_cols=167 Identities=20% Similarity=0.406 Sum_probs=146.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+...++|||+|||+++++++|+++|..||.+..+ ++.+..+++++|||||+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~---------------------------~~~~~~~~~~~g~afV~f 61 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL---------------------------AVVDVRTGTNRKFGYVDF 61 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC---------------------------CCCEEEEETTTTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE---------------------------EEEECCCCccccEEEEEE
Confidence 34568899999999999999999999999876541 344445788999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEee
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD 314 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d 314 (365)
.+.++|.+|++ |||..+.|+.|+|.++.+.... ...+.++|||+|||+.+++++|+++|+.||.|..+
T Consensus 62 ~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----- 129 (175)
T 1fje_B 62 ESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSK------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----- 129 (175)
T ss_dssp SSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCS------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----
T ss_pred CCHHHHHHHHh-cCCCEeCCeEEEEecCCCcccc------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----
Confidence 99999999995 8999999999999998765432 22345699999999999999999999999988766
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 315 RETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 315 ~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
..++.++|||||+|.+.++|.+|+..|||..|.||+|+|.||.+|+
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 4678999999999999999999999999999999999999998874
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.5e-31 Score=246.58 Aligned_cols=172 Identities=22% Similarity=0.322 Sum_probs=157.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|+.||.|..+. ++.+..+|.++|||||.|.+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~--------------------------i~~~~~~g~~~g~afV~f~~~ 147 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCF--------------------------LVYSERTGQSKGYGFAEYMKK 147 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTTCCEEEEEEEEESSH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEE--------------------------EEeeCCCCccceEEEEEECCH
Confidence 467999999999999999999999999999887 777888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcC-cHHHHHHHHhccCCeEEEEEEeeCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEV-DNARLEQVFSEHGKVVNARVVYDRE 316 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~-tee~L~~~F~~~G~V~~v~i~~d~~ 316 (365)
++|.+|+..|+|..++|+.|.|.++.+...... ..+.++|||+|||+.+ ++++|+++|+.||.|..|+|.++.
T Consensus 148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~-----~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~- 221 (284)
T 3smz_A 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPA-----LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ- 221 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCGGGCCTT-----TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcc-----cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-
Confidence 999999999999999999999999987654322 2345699999999995 999999999999999999999986
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 317 TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 317 ~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
+|+++|||||+|.+.++|.+|+..|||..++|++|+|.|+.++..
T Consensus 222 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 789999999999999999999999999999999999999987764
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.9e-31 Score=247.29 Aligned_cols=174 Identities=18% Similarity=0.308 Sum_probs=146.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccC-CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAG-TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
..++|||+|||+++++++|+.+|..|| .|..+. ++.+.. +.++|||||.|.+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~--------------------------i~~~~~-~~~~g~afV~f~~ 168 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIR--------------------------LPSLRF-NTSRRFAYIDVTS 168 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEE--------------------------CC--------CCEEEEECSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEE--------------------------EEeCCC-CCcceEEEEEECC
Confidence 478999999999999999999999999 998887 444443 7789999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCc-CcHHHHHHHHhccCCeEEEEEEeeC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDR 315 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~ 315 (365)
.++|.+|+..|+|..+.|+.|.|.++.+....... .....+.++|||+|||+. +++++|+++|+.||.|..|+|+++.
T Consensus 169 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 169 KEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT-DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCCC----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 99999999999999999999999998876543322 123445679999999999 9999999999999999999999987
Q ss_pred C-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 316 E-TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 316 ~-~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
. +|.++|||||+|.+.++|.+|+ .|||..|+|++|+|.||.+++
T Consensus 248 ~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp C---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 6 5999999999999999999999 899999999999999999874
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2e-30 Score=231.59 Aligned_cols=166 Identities=16% Similarity=0.257 Sum_probs=141.1
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLP-YDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp-~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
+.++|||+||| +.+++++|+++|+.||.|..++ ++.+ .+|||||+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~--------------------------i~~~-----~~g~afV~f~~ 51 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVK--------------------------FMKS-----KPGAAMVEMAD 51 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEE--------------------------ECTT-----STTCEEEEESS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEE--------------------------EecC-----CCCEEEEEECC
Confidence 46899999999 8999999999999999999887 3322 47999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCC---------------------C--------CCCcCCCCceEEEeCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---------------------R--------APRVFEPGFRIYVGNL 287 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~---------------------~--------~~~~~~~~~~lfV~nL 287 (365)
.++|.+|+..|||..+.|+.|+|.++......+. + ......+..+|||+||
T Consensus 52 ~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NL 131 (205)
T 3tyt_A 52 GYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNA 131 (205)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCC
Confidence 9999999999999999999999998864432110 0 0011245678999999
Q ss_pred CCcCcHHHHHHHHhccCCe--EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe----eEEEEEc
Q 017842 288 PWEVDNARLEQVFSEHGKV--VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR----AIRVNVA 356 (365)
Q Consensus 288 p~~~tee~L~~~F~~~G~V--~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr----~l~V~~a 356 (365)
|+.+++++|+++|+.||.| ..|++..+. +.++|||||+|.+.++|.+||..|||..|.|+ ++.|.||
T Consensus 132 p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 132 PLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999999999 899998774 45579999999999999999999999999876 6888776
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=5.3e-30 Score=232.44 Aligned_cols=167 Identities=22% Similarity=0.394 Sum_probs=144.6
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
++.++|||+|||+ ++++++|+++|+.||.|..++ ++.+. +|||||+|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~--------------------------i~~~~-----~g~afV~F~ 80 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVK--------------------------ILFNK-----KENALVQMA 80 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEE--------------------------ECCTT-----SCCEEEEES
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEE--------------------------EEECC-----CCEEEEEEC
Confidence 4678999999999 999999999999999999887 44332 789999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCC---------------------------CCcCCCCceEEEeCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA---------------------------PRVFEPGFRIYVGNLP 288 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~---------------------------~~~~~~~~~lfV~nLp 288 (365)
+.++|.+|+..|+|..|.|+.|+|.++.+......+. .....+.++|||+|||
T Consensus 81 ~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp 160 (229)
T 2adc_A 81 DGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 160 (229)
T ss_dssp CHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCC
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCC
Confidence 9999999999999999999999999887553211110 0113456899999999
Q ss_pred CcCcHHHHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeeEEEEEcccc
Q 017842 289 WEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAEDR 359 (365)
Q Consensus 289 ~~~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~-gr~l~V~~a~~~ 359 (365)
+.+++++|+++|+.|| .|..|++..+ .+|||||+|.+.++|.+|+..|||..+. |++|+|.|++++
T Consensus 161 ~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 161 PSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999 9999999653 3789999999999999999999999999 999999999865
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=8e-30 Score=237.83 Aligned_cols=168 Identities=20% Similarity=0.334 Sum_probs=145.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEE
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLA----MLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGF 231 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~af 231 (365)
..+.++|||+|||+++++++|+ .+|+.||.|..++ +.. +++++||||
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~--------------------------~~~---~~~~~g~af 56 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIL--------------------------VSR---SLKMRGQAF 56 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEE--------------------------EcC---CCCcceEEE
Confidence 3468899999999999999966 8999999998876 332 778999999
Q ss_pred EEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCC-----------------------------------------
Q 017842 232 VTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE----------------------------------------- 270 (365)
Q Consensus 232 V~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~----------------------------------------- 270 (365)
|+|.+.++|.+|+..|||..|.|+.|+|.++........
T Consensus 57 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (282)
T 3pgw_A 57 VIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGA 136 (282)
T ss_pred EEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCC
Confidence 999999999999999999999999999998865442000
Q ss_pred --------------------------------------------------------------CCCCcCCCCceEEEeCCC
Q 017842 271 --------------------------------------------------------------RAPRVFEPGFRIYVGNLP 288 (365)
Q Consensus 271 --------------------------------------------------------------~~~~~~~~~~~lfV~nLp 288 (365)
.......+.++|||+|||
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 216 (282)
T 3pgw_A 137 VQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLP 216 (282)
T ss_pred CCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCC
Confidence 000122356789999999
Q ss_pred CcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeeEEEEEcc
Q 017842 289 WEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAE 357 (365)
Q Consensus 289 ~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~-gr~l~V~~a~ 357 (365)
+.+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.||+
T Consensus 217 ~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 217 EETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999999999999999999999663 689999999999999999999999999 9999999986
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.4e-29 Score=236.40 Aligned_cols=157 Identities=27% Similarity=0.429 Sum_probs=145.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+++|+.|| |..+. + ++++|||||+|.+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~--------------------------~------~~~~g~afV~f~~~ 67 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCF--------------------------V------DKYKGTAFVTLLNG 67 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEE--------------------------E------ETTTTEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEE--------------------------E------ecCCCEEEEEeCCH
Confidence 468999999999999999999999999 77765 2 46789999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET 317 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~ 317 (365)
++|.+|+..|||..+.|+.|+|.++.. .++|||+|||+.+++++|+++|+.||.|..++++++..+
T Consensus 68 ~~A~~A~~~l~~~~~~g~~i~v~~~~~--------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~ 133 (284)
T 3smz_A 68 EQAEAAINAFHQSRLRERELSVQLQPT--------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT 133 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCC--------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT
T ss_pred HHHHHHHHHcCCCeeCCeEEEEEecCC--------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC
Confidence 999999999999999999999997432 249999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 318 GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 318 ~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
|.++|||||+|.+.++|.+|+..|+|..+.|++|+|.|+.++..
T Consensus 134 g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 134 GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999987664
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=3.8e-30 Score=227.57 Aligned_cols=165 Identities=22% Similarity=0.395 Sum_probs=143.0
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 159 DAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 159 ~~tvfVgnLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.++|||+|||+ ++++++|+++|+.||.|..++ ++.+. +|||||+|.+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~--------------------------i~~~~-----~g~afV~f~~~ 51 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVK--------------------------ILFNK-----KENALVQMADG 51 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEE--------------------------CSTTC-----SSCCEEECTTT
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEE--------------------------EEeCC-----CCEEEEEECCH
Confidence 57999999999 999999999999999998877 33322 78999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCC---------------------------CCCcCCCCceEEEeCCCCc
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPER---------------------------APRVFEPGFRIYVGNLPWE 290 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~---------------------------~~~~~~~~~~lfV~nLp~~ 290 (365)
++|.+|+..|||..+.|+.|+|.++.+......+ ......+.++|||+|||+.
T Consensus 52 ~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~ 131 (198)
T 1qm9_A 52 NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 131 (198)
T ss_dssp HHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTT
T ss_pred HHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCC
Confidence 9999999999999999999999988754311100 0112345789999999999
Q ss_pred CcHHHHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeeEEEEEcccc
Q 017842 291 VDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD-GRAIRVNVAEDR 359 (365)
Q Consensus 291 ~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~-gr~l~V~~a~~~ 359 (365)
+++++|+++|+.|| .|..|++.++ .+|||||+|.+.++|.+|+..|||..++ |++|+|.|++++
T Consensus 132 ~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 132 VSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999 9999999754 2799999999999999999999999999 999999999864
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.9e-29 Score=233.24 Aligned_cols=157 Identities=34% Similarity=0.460 Sum_probs=142.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++|+++|+.+|+.||.|..+.+ . +++|||||.|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i--------------------------~------~~kg~afV~f~~ 67 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI--------------------------N------RDRGFGFIRLES 67 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE--------------------------E------TTTTEEEEECSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE--------------------------e------CCCcEEEEEECC
Confidence 35679999999999999999999999999988763 2 458999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE 316 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~ 316 (365)
.++|.+|+..|||..|.|+.|+|.++.+ +++|||+|||+.+|+++|+++|+.||.|..|+|+++ .
T Consensus 68 ~~~A~~A~~~l~g~~i~g~~l~v~~a~~--------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~ 132 (261)
T 3sde_A 68 RTLAEIAKAELDGTILKSRPLRIRFATH--------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-D 132 (261)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCC--------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T
T ss_pred HHHHHHHHHHcCCcEECCceeEeeeccc--------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-C
Confidence 9999999999999999999999998864 348999999999999999999999999999999999 5
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCC-CccC---CeeEEEEEccccc
Q 017842 317 TGRSRGFGFVTMSSETELNDAIAALDG-QNLD---GRAIRVNVAEDRQ 360 (365)
Q Consensus 317 ~~~~kG~afV~F~s~~~a~~Al~~l~~-~~l~---gr~l~V~~a~~~~ 360 (365)
+|+++|||||+|.+.++|.+|+..||+ ..+. ||+|+|.++....
T Consensus 133 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 133 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 899999999999999999999999955 4444 9999999998654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.6e-29 Score=236.87 Aligned_cols=162 Identities=15% Similarity=0.276 Sum_probs=137.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+...++|||+|||+++++++|+.+|+.||.|..+. ++.+... ++|||||+|
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~--~~g~afV~f 88 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVD--------------------------VADSLKK--NFRFARIEF 88 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTS--SSEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEECCCC--CcEEEEEEE
Confidence 445688999999999999999999999999999887 5554433 589999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccC-CeEEEEEEe
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVY 313 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G-~V~~v~i~~ 313 (365)
.+.++|.+|+. ++|..+.|+.|.|.++. .++|||+|||+.+++++|+++|+.|| .|..|+|++
T Consensus 89 ~~~~~A~~A~~-~~~~~~~g~~i~v~~~~---------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 152 (292)
T 2ghp_A 89 ARYDGALAAIT-KTHKVVGQNEIIVSHLT---------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS 152 (292)
T ss_dssp SSHHHHHHHHT-TTTCEETTEECEEEECC---------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred CCHHHHHHHHH-hCCcEeCCcEEEEEECC---------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 99999999996 79999999999999763 34999999999999999999999999 999999998
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 314 DRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 314 d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
+.. |.++|||||+|.+.++|.+|+..|+|..+.|++|+|.|+.++.+
T Consensus 153 ~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 153 LRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp -------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred CCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 865 78899999999999999999999999999999999999987654
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=1.1e-23 Score=179.82 Aligned_cols=144 Identities=27% Similarity=0.362 Sum_probs=114.6
Q ss_pred EEecCCCCCccceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCC-----CCCCCCCCCcCCCCceEEEeCCCCcC
Q 017842 217 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR-----GTQPERAPRVFEPGFRIYVGNLPWEV 291 (365)
Q Consensus 217 ~~~~~~~~~~~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~-----~~~~~~~~~~~~~~~~lfV~nLp~~~ 291 (365)
++.+.. .++|||||+|.+.++|.+|+..+++....+..+.+...... ............+.++|||+|||+.+
T Consensus 5 l~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 5 LILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp EEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred EEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 444543 68999999999999999999988864433333333222111 00111122233456799999999999
Q ss_pred cHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 292 DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 292 tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..|.|++|+|.||+++..+
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999999999989999999999999999999999999999999999999999977544
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=1.1e-22 Score=172.26 Aligned_cols=133 Identities=25% Similarity=0.370 Sum_probs=115.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHH-ccCcccCeeEEEeecCCCCC--------CCCCCCCcCCCCceEEEeCCCCcCcH
Q 017842 223 TDRSRGFGFVTMSTVEEAEKAVEMF-HRYDIDGRLLTVNKAAPRGT--------QPERAPRVFEPGFRIYVGNLPWEVDN 293 (365)
Q Consensus 223 ~~~~~g~afV~f~~~e~a~~Al~~l-ng~~~~gr~l~V~~a~~~~~--------~~~~~~~~~~~~~~lfV~nLp~~~te 293 (365)
....+|+++|+|.+.++|.+|+..+ ||..++| .|+++.+..... ..........+.++|||+|||+.+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 4467899999999999999999999 9999999 999998765321 11122334456679999999999999
Q ss_pred HHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 294 ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 294 e~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
++|+++|+.||.|..|+|+++ ++|||||+|.+.++|.+|+..|||..+.|++|+|.|+.++.+
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~r 150 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 150 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCCC
Confidence 999999999999999999876 589999999999999999999999999999999999988754
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=7.5e-22 Score=159.69 Aligned_cols=110 Identities=23% Similarity=0.351 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||||||+++++++|+++|+.||.|..++ ++.+. +.++|||||+|.+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~--------------------------i~~d~--~~~kg~afV~f~~~ 55 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCK--------------------------VVCDE--NGSKGYGFVHFETQ 55 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEEET--TEEEEEEEEEESCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEE--------------------------EeecC--CCCCceEEEEECCH
Confidence 457899999999999999999999999999887 55553 45799999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHH
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNAR 295 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~ 295 (365)
++|.+|+..|+|..|+|+.|+|.++.++..+...........++|||+|||+.+|++.
T Consensus 56 ~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 56 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 9999999999999999999999999877655444333444456899999999999863
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=151.52 Aligned_cols=83 Identities=30% Similarity=0.556 Sum_probs=79.1
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
...+++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..|.||+|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 017842 356 AED 358 (365)
Q Consensus 356 a~~ 358 (365)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=7.6e-21 Score=147.27 Aligned_cols=84 Identities=19% Similarity=0.383 Sum_probs=78.4
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC-CCccCCeeEEEEEcc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD-GQNLDGRAIRVNVAE 357 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~-~~~l~gr~l~V~~a~ 357 (365)
++|||+|||+.+|+++|+++|+.|| .|..|+|++++.+|.++|||||+|.+.++|.+||..|+ +..++||+|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 4899999999999999999999999 89999999999999999999999999999999999774 567999999999999
Q ss_pred ccccCC
Q 017842 358 DRQRRS 363 (365)
Q Consensus 358 ~~~~~~ 363 (365)
++++..
T Consensus 82 ~~~~~~ 87 (91)
T 2lxi_A 82 PKPKIN 87 (91)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 888753
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.8e-20 Score=156.01 Aligned_cols=127 Identities=28% Similarity=0.359 Sum_probs=84.3
Q ss_pred ceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeE
Q 017842 228 GFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV 307 (365)
Q Consensus 228 g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~ 307 (365)
-++|++|.+...+..|+..++|....|+.- +... ..+....+.++|||+|||+.+++++|+++|+.||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~--------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG--------RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp -------------------------------CCSC--------CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcC--------CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 467889999999999999988877666542 1111 1223334567999999999999999999999999999
Q ss_pred EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccCC
Q 017842 308 NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 363 (365)
Q Consensus 308 ~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~~ 363 (365)
.|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++..+.
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999998899999999999999999999999999999999999999999776543
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=8.9e-20 Score=146.33 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=79.7
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++|+.+++++|||||+|.+.++|.+|+..|||..|.||+|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 017842 357 EDRQ 360 (365)
Q Consensus 357 ~~~~ 360 (365)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7654
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.8e-19 Score=136.49 Aligned_cols=82 Identities=34% Similarity=0.731 Sum_probs=79.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
++|||+|||+.+++++|+++|+.||.|..|++++++.+++++|||||+|.+.++|.+|+..|||..+.|++|+|.||.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 017842 360 QR 361 (365)
Q Consensus 360 ~~ 361 (365)
.+
T Consensus 82 ~~ 83 (83)
T 3md1_A 82 EH 83 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 29
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=137.81 Aligned_cols=83 Identities=37% Similarity=0.671 Sum_probs=77.2
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++|||+|||+.+++++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+..|||..+.|++|+|.||+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45699999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 30
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.5e-19 Score=155.40 Aligned_cols=130 Identities=19% Similarity=0.337 Sum_probs=81.5
Q ss_pred EEeCCHHHHHHHHHHHccCccc--CeeEEEeecCCCCC-----------C-CCCCCCcCCCCceEEEeCCCCcCcHHHHH
Q 017842 232 VTMSTVEEAEKAVEMFHRYDID--GRLLTVNKAAPRGT-----------Q-PERAPRVFEPGFRIYVGNLPWEVDNARLE 297 (365)
Q Consensus 232 V~f~~~e~a~~Al~~lng~~~~--gr~l~V~~a~~~~~-----------~-~~~~~~~~~~~~~lfV~nLp~~~tee~L~ 297 (365)
.+|.+.+++..|+..+++.... |+.+.+........ . ....+....++++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999998887664 77776654322110 0 11123344556799999999999999999
Q ss_pred HHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccccc
Q 017842 298 QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQR 361 (365)
Q Consensus 298 ~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~ 361 (365)
.+|+.||.|..|.|++++.+|.++|||||+|.+..+|.+||..|||..|.|++|+|.||.++..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999987654
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-20 Score=144.62 Aligned_cols=80 Identities=26% Similarity=0.396 Sum_probs=75.3
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCC--eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCC----ccCCeeEE
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGK--VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ----NLDGRAIR 352 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~--V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~----~l~gr~l~ 352 (365)
-.+|||+|||+.+|+++|+++|+.||. |..|+|++|+.+|+++|||||+|.+.++|.+|++.|||. .++||+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 349999999999999999999999995 679999999999999999999999999999999999997 48999999
Q ss_pred EEEccc
Q 017842 353 VNVAED 358 (365)
Q Consensus 353 V~~a~~ 358 (365)
|.||++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999985
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=138.57 Aligned_cols=86 Identities=33% Similarity=0.596 Sum_probs=81.8
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++|||+|||+.+++++|+++|+.||.|..|+|.+++.+++++|||||+|.+.++|.+|+..|||..+.|++|+|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45699999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 017842 358 DRQRRS 363 (365)
Q Consensus 358 ~~~~~~ 363 (365)
++...+
T Consensus 84 ~~~~~~ 89 (95)
T 2dnz_A 84 ERLDGG 89 (95)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887654
No 33
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=141.38 Aligned_cols=87 Identities=26% Similarity=0.412 Sum_probs=81.9
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...++++|||+|||+.+++++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecccccc
Q 017842 355 VAEDRQR 361 (365)
Q Consensus 355 ~a~~~~~ 361 (365)
||.+++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988764
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=140.12 Aligned_cols=88 Identities=24% Similarity=0.405 Sum_probs=83.1
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccccCC
Q 017842 356 AEDRQRRS 363 (365)
Q Consensus 356 a~~~~~~~ 363 (365)
+.++.++.
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99887654
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.5e-19 Score=138.05 Aligned_cols=87 Identities=22% Similarity=0.531 Sum_probs=81.4
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
|+++++.+
T Consensus 92 ~a~~~~~~ 99 (100)
T 2do4_A 92 ISNSGPSS 99 (100)
T ss_dssp ECCCCSCC
T ss_pred ECCCCCCC
Confidence 99988764
No 36
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=6.5e-19 Score=142.07 Aligned_cols=87 Identities=26% Similarity=0.484 Sum_probs=82.0
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccccC
Q 017842 356 AEDRQRR 362 (365)
Q Consensus 356 a~~~~~~ 362 (365)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9987654
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=6.8e-20 Score=141.43 Aligned_cols=83 Identities=23% Similarity=0.485 Sum_probs=73.1
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccC--CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHG--KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G--~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
.+|||+|||+.+++++|+++|+.|| .|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..+.||+|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 017842 358 DRQRR 362 (365)
Q Consensus 358 ~~~~~ 362 (365)
+.+.+
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87654
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=138.01 Aligned_cols=86 Identities=30% Similarity=0.627 Sum_probs=80.8
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+. |++..|.|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 445699999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
.++..++
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 9877543
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4.7e-19 Score=138.24 Aligned_cols=84 Identities=24% Similarity=0.571 Sum_probs=80.1
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
|.++|||+|||+.+++++|+++|+.||.|..|+|.+++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.||.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 017842 358 DRQR 361 (365)
Q Consensus 358 ~~~~ 361 (365)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8764
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.1e-19 Score=143.27 Aligned_cols=83 Identities=31% Similarity=0.446 Sum_probs=79.4
Q ss_pred CceEEEeCCCC------cCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC-eeE
Q 017842 279 GFRIYVGNLPW------EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG-RAI 351 (365)
Q Consensus 279 ~~~lfV~nLp~------~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g-r~l 351 (365)
.++|||+|||+ .+++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|||..|.| |+|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 45999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEcccccc
Q 017842 352 RVNVAEDRQR 361 (365)
Q Consensus 352 ~V~~a~~~~~ 361 (365)
+|.+|.++.+
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9999987654
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=139.12 Aligned_cols=81 Identities=30% Similarity=0.558 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++|+++|+++|++||.|..++ +++++.+|+++|||||+|.+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~--------------------------i~~d~~tg~~kG~afV~f~~~ 71 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--------------------------LIRDKVAGHSLGYGFVNYVTA 71 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEECSSSCCEEEEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeE--------------------------eeecCCCCcccccEEEEECCH
Confidence 467999999999999999999999999999887 788888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
++|.+|+..|||..|+|+.|+|.++.|
T Consensus 72 ~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 72 KDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 999999999999999999999999875
No 42
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=139.23 Aligned_cols=88 Identities=35% Similarity=0.516 Sum_probs=82.7
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
||.++.+.
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99987764
No 43
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=138.02 Aligned_cols=86 Identities=28% Similarity=0.416 Sum_probs=81.4
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34569999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987754
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.4e-18 Score=140.03 Aligned_cols=88 Identities=34% Similarity=0.601 Sum_probs=82.3
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
|+.++..+
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99977653
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=5.8e-19 Score=134.27 Aligned_cols=81 Identities=35% Similarity=0.551 Sum_probs=77.5
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..+.|++|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 017842 357 E 357 (365)
Q Consensus 357 ~ 357 (365)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 46
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=139.47 Aligned_cols=87 Identities=31% Similarity=0.629 Sum_probs=81.8
Q ss_pred CcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 274 RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 274 ~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
....+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|+|..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccc
Q 017842 354 NVAEDRQ 360 (365)
Q Consensus 354 ~~a~~~~ 360 (365)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=138.30 Aligned_cols=86 Identities=23% Similarity=0.460 Sum_probs=80.2
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCC---CCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRE---TGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~---~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
+.++|||+|||+.+++++|+++|+.||.|..|+|.+++. ++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 456999999999999999999999999999999999876 66899999999999999999999999999999999999
Q ss_pred EccccccCC
Q 017842 355 VAEDRQRRS 363 (365)
Q Consensus 355 ~a~~~~~~~ 363 (365)
|++++.++.
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 999877643
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=139.58 Aligned_cols=88 Identities=33% Similarity=0.519 Sum_probs=82.1
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
||+.+.++
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99976553
No 49
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-19 Score=138.60 Aligned_cols=85 Identities=32% Similarity=0.542 Sum_probs=81.0
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEE-EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA-RVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v-~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
+.++|||+|||+.+++++|+++|+.||.|..| +|++++.++.++|||||+|.+.++|.+|+..|||..+.|++|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45699999999999999999999999999999 99999899999999999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987754
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.8e-18 Score=137.06 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=80.4
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC---eeEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG---RAIRV 353 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g---r~l~V 353 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+|+..|||..+.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456799999999999999999999999999999999997 79999999999999999999999999999988 99999
Q ss_pred EEccccccCC
Q 017842 354 NVAEDRQRRS 363 (365)
Q Consensus 354 ~~a~~~~~~~ 363 (365)
.||.++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999877543
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=139.55 Aligned_cols=89 Identities=26% Similarity=0.506 Sum_probs=82.9
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC------CCccCC
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD------GQNLDG 348 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~------~~~l~g 348 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34456799999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeEEEEEccccccCC
Q 017842 349 RAIRVNVAEDRQRRS 363 (365)
Q Consensus 349 r~l~V~~a~~~~~~~ 363 (365)
++|+|.|+.++....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999999877643
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-19 Score=138.77 Aligned_cols=86 Identities=42% Similarity=0.709 Sum_probs=81.3
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45569999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987654
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=7.8e-19 Score=140.41 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=82.5
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
||.++..+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99987654
No 54
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=134.88 Aligned_cols=83 Identities=33% Similarity=0.528 Sum_probs=79.0
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..+.|++|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 017842 356 AED 358 (365)
Q Consensus 356 a~~ 358 (365)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.6e-18 Score=136.96 Aligned_cols=86 Identities=31% Similarity=0.657 Sum_probs=80.3
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.|| |..|+|++++.+++++|||||+|.+.++|.+|+ .|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345567999999999999999999999997 999999999999999999999999999999999 799999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99987754
No 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=1e-18 Score=141.17 Aligned_cols=81 Identities=30% Similarity=0.532 Sum_probs=75.7
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.||.|..|+|+++. +.++|||||+|.+.++|.+||..|+|..|.||+|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3489999999999999999999999999999999985 55899999999999999999999999999999999999987
Q ss_pred ccc
Q 017842 359 RQR 361 (365)
Q Consensus 359 ~~~ 361 (365)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 57
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=136.44 Aligned_cols=83 Identities=25% Similarity=0.379 Sum_probs=78.6
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEE--------EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN--------ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~--------v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l 346 (365)
...+.++|||+|||+.+++++|+++|+.||.|.. |+|++++.+|+++|||||+|.+.++|.+|+..|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3455679999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCeeEEEEEcc
Q 017842 347 DGRAIRVNVAE 357 (365)
Q Consensus 347 ~gr~l~V~~a~ 357 (365)
.|++|+|.+|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999984
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-19 Score=139.62 Aligned_cols=87 Identities=32% Similarity=0.511 Sum_probs=82.0
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
.++..+.
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9877543
No 59
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=137.05 Aligned_cols=88 Identities=26% Similarity=0.479 Sum_probs=81.8
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEee-CCCCCcceEEEEEecCHHHHHHHHHHh-CCCccCCeeEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYD-RETGRSRGFGFVTMSSETELNDAIAAL-DGQNLDGRAIR 352 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d-~~~~~~kG~afV~F~s~~~a~~Al~~l-~~~~l~gr~l~ 352 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|+++ +.++.++|||||+|.+.++|.+|+..| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445679999999999999999999999999999999999 788999999999999999999999999 99999999999
Q ss_pred EEEccccccC
Q 017842 353 VNVAEDRQRR 362 (365)
Q Consensus 353 V~~a~~~~~~ 362 (365)
|.||.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987653
No 60
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.1e-18 Score=138.48 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=81.5
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc---CCeeEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL---DGRAIR 352 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l---~gr~l~ 352 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EEEccccccC
Q 017842 353 VNVAEDRQRR 362 (365)
Q Consensus 353 V~~a~~~~~~ 362 (365)
|.|+.++.+.
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999987754
No 61
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=135.43 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=78.4
Q ss_pred CCCceEEEeCCCCcCcHHHHH----HHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLE----QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~----~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
..+++|||+|||+.+++++|+ ++|+.||.|..|+|++++.+ +|||||+|.+.++|.+|+..|||..+.||+|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345799999999999999999 99999999999999988765 89999999999999999999999999999999
Q ss_pred EEEccccccCC
Q 017842 353 VNVAEDRQRRS 363 (365)
Q Consensus 353 V~~a~~~~~~~ 363 (365)
|.+|++++.++
T Consensus 84 V~~a~~~~~~~ 94 (96)
T 2dgx_A 84 VSLATGASGPS 94 (96)
T ss_dssp EEECCCSSCCC
T ss_pred EEEcCCCCCCC
Confidence 99999887765
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=135.78 Aligned_cols=84 Identities=33% Similarity=0.611 Sum_probs=79.4
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|+++ ++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45679999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987654
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=134.11 Aligned_cols=82 Identities=29% Similarity=0.551 Sum_probs=78.1
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 017842 356 AE 357 (365)
Q Consensus 356 a~ 357 (365)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=136.82 Aligned_cols=87 Identities=21% Similarity=0.406 Sum_probs=81.8
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeE-EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCee----E
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVV-NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA----I 351 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~-~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~----l 351 (365)
.+.++|||+|||+.+++++|+++|+.||.|. .|+|++++.+++++|||||+|.+.++|.+|+..|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3456999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEEccccccCC
Q 017842 352 RVNVAEDRQRRS 363 (365)
Q Consensus 352 ~V~~a~~~~~~~ 363 (365)
+|.||++...++
T Consensus 87 ~v~~a~~~~~~s 98 (99)
T 2div_A 87 KLNYATYSGPSS 98 (99)
T ss_dssp CEEETTCCSSSC
T ss_pred EEeecCCCCCCC
Confidence 999999877654
No 65
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=136.64 Aligned_cols=86 Identities=26% Similarity=0.554 Sum_probs=80.1
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET-GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~-~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
...+.++|||+|||+.+++++|+++|+.|| |..|+|++++.+ ++++|||||+|.+.++|.+|| .||+..|.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345567999999999999999999999999 999999999887 999999999999999999999 79999999999999
Q ss_pred EEccccccC
Q 017842 354 NVAEDRQRR 362 (365)
Q Consensus 354 ~~a~~~~~~ 362 (365)
.++.++..+
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987653
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.9e-18 Score=132.47 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=79.3
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|.++ +++++|||||+|.+.++|.+|+..|||..+.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999999974 7899999999999999999999999999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
+++..++
T Consensus 84 ~~~~~~~ 90 (92)
T 2dgv_A 84 RNASGPS 90 (92)
T ss_dssp SCCSSCC
T ss_pred CCCCCCC
Confidence 9877654
No 67
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=137.94 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=81.6
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeE--------EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVV--------NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 347 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~--------~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~ 347 (365)
..+.++|||+|||+.+++++|+++|+.||.|. .|+|++++.+++++|||||+|.+.++|.+||..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CeeEEEEEccccccC
Q 017842 348 GRAIRVNVAEDRQRR 362 (365)
Q Consensus 348 gr~l~V~~a~~~~~~ 362 (365)
|++|+|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987754
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.8e-18 Score=132.64 Aligned_cols=87 Identities=30% Similarity=0.579 Sum_probs=79.4
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|+++.. .++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567999999999999999999999999999999998854 389999999999999999999999999999999999
Q ss_pred EccccccCC
Q 017842 355 VAEDRQRRS 363 (365)
Q Consensus 355 ~a~~~~~~~ 363 (365)
|+.++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 999887643
No 69
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=5.4e-18 Score=141.23 Aligned_cols=88 Identities=33% Similarity=0.550 Sum_probs=82.6
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCC
Q 017842 356 AEDRQRRS 363 (365)
Q Consensus 356 a~~~~~~~ 363 (365)
|+++.++.
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99877653
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=131.45 Aligned_cols=82 Identities=22% Similarity=0.423 Sum_probs=77.1
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCC-cceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR-SRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~-~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
.++|||+|||+.+++++|+++|+.||.|..|+|+++..++. ++|||||+|.+.++|.+|+..|||..+.|++|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 45999999999999999999999999999999999987665 89999999999999999999999999999999999998
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=135.69 Aligned_cols=85 Identities=32% Similarity=0.585 Sum_probs=79.7
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhc-cCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc-cCCeeEEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSE-HGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN-LDGRAIRVN 354 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~-~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~-l~gr~l~V~ 354 (365)
.+.++|||+|||+.+++++|+++|+. ||.|..|+|+++. +++++|||||+|.+.++|.+|+..|||.. +.|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34569999999999999999999999 9999999999998 89999999999999999999999999999 999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
++.++..+
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876643
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=2.3e-18 Score=142.02 Aligned_cols=86 Identities=31% Similarity=0.531 Sum_probs=81.2
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|||..|.|++|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 017842 356 AEDRQR 361 (365)
Q Consensus 356 a~~~~~ 361 (365)
+.++..
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987653
No 73
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-18 Score=136.92 Aligned_cols=87 Identities=34% Similarity=0.541 Sum_probs=80.2
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|++ .|.|++|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345567999999999999999999999999999999999999999999999999999999999999898 8999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
||..+.++
T Consensus 92 ~a~~~~~~ 99 (116)
T 2cqd_A 92 LAYLGAKP 99 (116)
T ss_dssp ESTTTCCC
T ss_pred EcccCCCc
Confidence 99765443
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=138.56 Aligned_cols=84 Identities=30% Similarity=0.595 Sum_probs=79.2
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..++|||+|||+.+++++|+++|+.||.|..|+|.++. ++.++|||||+|.+.++|.+|+..|||..+.|++|+|.|++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34599999999999999999999999999999999997 89999999999999999999999999999999999999998
Q ss_pred ccccC
Q 017842 358 DRQRR 362 (365)
Q Consensus 358 ~~~~~ 362 (365)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 77643
No 75
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.7e-18 Score=129.93 Aligned_cols=79 Identities=33% Similarity=0.675 Sum_probs=74.8
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+. +++..|.|++|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 445699999999999999999999999999999999999999999999999999999999997 6889999999999986
No 76
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9e-19 Score=138.48 Aligned_cols=84 Identities=38% Similarity=0.742 Sum_probs=79.8
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++|||+|||+.+++++|+++|+.||.|..|+|.+++.+|.++|||||+|.+.++|.+|+..|||..+.|++|+|.||.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 017842 358 DRQR 361 (365)
Q Consensus 358 ~~~~ 361 (365)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7654
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=130.67 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=78.2
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
...++|||+|||+.+++++|+++|+.| .|..|+|+++ .+|+++|||||+|.+.++|.+|+. |||..|.||.|+|.+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345699999999999999999999999 9999999999 789999999999999999999999 9999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.+++++
T Consensus 85 ~~~~~s 90 (91)
T 2dgw_A 85 KSGPSS 90 (91)
T ss_dssp SSCCCC
T ss_pred CcCCCC
Confidence 988764
No 78
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=3.8e-18 Score=130.83 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=76.3
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
++|||+|||+.+++++|+++|+.||.|..|++++++.+++++|||||+|.+.++|.+|+ .|||..+.|++|+|.+++++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 59999999999999999999999999999999999989999999999999999999999 79999999999999999864
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=132.44 Aligned_cols=81 Identities=33% Similarity=0.547 Sum_probs=76.7
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++. ++++|||||+|.+.++|.+|+..|||..+.|++|+|.||
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4456999999999999999999999999999999999975 899999999999999999999999999999999999998
Q ss_pred cc
Q 017842 357 ED 358 (365)
Q Consensus 357 ~~ 358 (365)
++
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 80
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=6.5e-18 Score=134.28 Aligned_cols=83 Identities=31% Similarity=0.545 Sum_probs=78.3
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|+++. +++++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34566799999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred Eccc
Q 017842 355 VAED 358 (365)
Q Consensus 355 ~a~~ 358 (365)
||.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9863
No 81
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=3.9e-18 Score=139.68 Aligned_cols=88 Identities=26% Similarity=0.404 Sum_probs=82.0
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+.+|+.||.|..|.|+++..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456799999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
||.++..+
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876643
No 82
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=131.97 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=77.9
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++. .++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34567999999999999999999999999999999999854 3689999999999999999999999999999999999
Q ss_pred ccccccC
Q 017842 356 AEDRQRR 362 (365)
Q Consensus 356 a~~~~~~ 362 (365)
+.++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9977654
No 83
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=1e-17 Score=136.85 Aligned_cols=87 Identities=30% Similarity=0.505 Sum_probs=81.5
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|+++. +|+++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
||......
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99876654
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=145.62 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=77.6
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccC--CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHG--KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G--~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.++|||+|||+.+++++|+++|+.|| .|..|+|++|+.+|+++|||||+|.+.++|.+||..|||..|.||+|+|.+|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 45999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 017842 357 EDR 359 (365)
Q Consensus 357 ~~~ 359 (365)
.++
T Consensus 135 ~~~ 137 (156)
T 3n9u_C 135 TRQ 137 (156)
T ss_dssp CHH
T ss_pred CCC
Confidence 764
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=134.03 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=79.4
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
....++|||+|||+.+++++|+++|..||.|..+++++++.+++++|||||+|.+.++|.+|+..|||..|.||+|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 017842 356 AEDRQ 360 (365)
Q Consensus 356 a~~~~ 360 (365)
+..+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 98654
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.8e-18 Score=138.90 Aligned_cols=82 Identities=27% Similarity=0.509 Sum_probs=77.7
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..+.|++|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cc
Q 017842 356 AE 357 (365)
Q Consensus 356 a~ 357 (365)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 87
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=135.59 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+++.++|||+|||+++++++|+++|++||.|..+. ++++..+++++|||||+|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~--------------------------i~~d~~tg~~rG~aFV~f~ 56 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVE--------------------------ILLHPRTRKHLGLARVLFT 56 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------EEECTTTCCEEEEEEEEES
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EEECCCCCceeeEEEEEEC
Confidence 34678999999999999999999999999999988 8888899999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+.++|.+|+..|||..|.|+.|+|.++...
T Consensus 57 ~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 57 STRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999988644
No 88
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=143.80 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=80.4
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEE--EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCC----ccCC
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN--ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ----NLDG 348 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~--v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~----~l~g 348 (365)
...+.++|||+|||+.+++++|+++|+.||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455679999999999999999999999999977 99999999999999999999999 999999999999 9999
Q ss_pred eeEEEEEcccccc
Q 017842 349 RAIRVNVAEDRQR 361 (365)
Q Consensus 349 r~l~V~~a~~~~~ 361 (365)
|+|+|.||+++.+
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988754
No 89
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=134.06 Aligned_cols=84 Identities=36% Similarity=0.542 Sum_probs=78.2
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|..||.|..|+|++++ +++++|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 456799999999999999999999999999999999997 5999999999999999999999999999999999999999
Q ss_pred ccccc
Q 017842 357 EDRQR 361 (365)
Q Consensus 357 ~~~~~ 361 (365)
+....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 90
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=135.29 Aligned_cols=87 Identities=30% Similarity=0.525 Sum_probs=81.2
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||.. ++..|.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345567999999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99987654
No 91
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=135.74 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=74.9
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++. |+++|||||+|.+.++|.+|+. ++|..+.|+.|+|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 345999999999999999999999999999999999987 9999999999999999999999 99999999999999876
Q ss_pred c
Q 017842 358 D 358 (365)
Q Consensus 358 ~ 358 (365)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 92
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=133.35 Aligned_cols=98 Identities=23% Similarity=0.270 Sum_probs=82.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
++|||+|||+++++++|+.+|++||.|..+. +..+ ++|||||+|.+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~-----~~g~afV~f~~~~~ 49 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVW--------------------------IARN-----PPGFAFVEFEDPRD 49 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEE--------------------------EESS-----SSSEEEEECSSHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EeeC-----CCCEEEEEECCHHH
Confidence 4899999999999999999999999998887 4433 78999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCCCCCCCC--CCcCCCCceEEEeCCC
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA--PRVFEPGFRIYVGNLP 288 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~--~~~~~~~~~lfV~nLp 288 (365)
|.+|+..|+|..+.|+.|+|.++.++....... +.......+||||||+
T Consensus 50 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 50 AEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred HHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 999999999999999999999998776443222 2222335689999997
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=136.87 Aligned_cols=84 Identities=27% Similarity=0.572 Sum_probs=76.4
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeC-CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDR-ETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~-~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
....++|||+|||+.+++++|+++|+.|| |..|+|++++ .+|+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 9999999998 68999999999999999999999 799999999999999
Q ss_pred Ecccccc
Q 017842 355 VAEDRQR 361 (365)
Q Consensus 355 ~a~~~~~ 361 (365)
+|+++.+
T Consensus 94 ~a~~~~~ 100 (100)
T 2j76_E 94 VADQAQD 100 (100)
T ss_dssp ECCCSCC
T ss_pred eccCCCC
Confidence 9988753
No 94
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=135.02 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=72.9
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCeeEEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG--QNLDGRAIRVN 354 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~--~~l~gr~l~V~ 354 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|+++ ||||||+|.+.++|.+|+..|++ ..|.||+|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34569999999999999999999999999999999865 79999999999999999998864 78999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
||+.+...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99987654
No 95
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.5e-18 Score=133.60 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=76.3
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++|||+|||+.+++++|+++|+.||.|..+++++++.+++++|||||+|.+.++|.+|+..|||..|.||+|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 017842 358 D 358 (365)
Q Consensus 358 ~ 358 (365)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 96
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.4e-17 Score=141.64 Aligned_cols=87 Identities=24% Similarity=0.435 Sum_probs=81.8
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
.++....
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 8766543
No 97
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=5.2e-18 Score=135.70 Aligned_cols=86 Identities=31% Similarity=0.577 Sum_probs=77.6
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+ |..|+|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345579999999999999999999999999999999999999999999999999999999999965 6999999999999
Q ss_pred ccccccC
Q 017842 356 AEDRQRR 362 (365)
Q Consensus 356 a~~~~~~ 362 (365)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 98
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=130.23 Aligned_cols=85 Identities=27% Similarity=0.495 Sum_probs=78.9
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||. ++..|.|++|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3455699999999999999999999999999999999999999999999999999999999999 57899999999999
Q ss_pred ccccccC
Q 017842 356 AEDRQRR 362 (365)
Q Consensus 356 a~~~~~~ 362 (365)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9987653
No 99
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=131.80 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=77.4
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|..+ +.++|||||+|.+.++|.+|+..||+..|.|++|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred ccccccCC
Q 017842 356 AEDRQRRS 363 (365)
Q Consensus 356 a~~~~~~~ 363 (365)
++++.++.
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 99877643
No 100
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=132.77 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=75.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccC-CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAG-TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.++|||+|||+++|+++|+++|++|| .|..++ +++++.+++++|||||+|.+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~--------------------------i~~d~~t~~~rg~aFV~F~~~ 54 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVR--------------------------LMRNKSSGQSRGFAFVEFSHL 54 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCC--------------------------SSSCSSSCCCSSEEEEECSSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEE--------------------------EEecCCCCCcCceEEEEecCH
Confidence 36899999999999999999999999 788776 788888999999999999999
Q ss_pred HHHHHHHHHH-ccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMF-HRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~l-ng~~~~gr~l~V~~a~~~~~ 267 (365)
++|.+|+..+ ++..++|+.|+|.++.++..
T Consensus 55 ~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 55 QDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp HHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred HHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 9999999876 56789999999999987654
No 101
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=2.5e-18 Score=140.46 Aligned_cols=82 Identities=23% Similarity=0.491 Sum_probs=78.0
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+ .|||..|.|++|+|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 469999999999999999999999999999999999999999999999999999999999 6999999999999999986
Q ss_pred ccc
Q 017842 359 RQR 361 (365)
Q Consensus 359 ~~~ 361 (365)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 102
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.7e-18 Score=127.50 Aligned_cols=75 Identities=29% Similarity=0.570 Sum_probs=72.6
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
+|||+|||+.+++++|+++|+.||.|..|++++++.+++++|||||+|.+.++|.+|+. |||..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 9999999999999986
No 103
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=134.52 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=78.5
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCC-eEEEEEE-eeCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCeeEEE
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGK-VVNARVV-YDRETGRSRGFGFVTMSSETELNDAIAALD--GQNLDGRAIRV 353 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~-V~~v~i~-~d~~~~~~kG~afV~F~s~~~a~~Al~~l~--~~~l~gr~l~V 353 (365)
+.++|||+|||+.+++++|+++|..||. |..|+|+ ++..+++++|||||+|.+.++|.+|+..|+ +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4569999999999999999999999998 9999998 888889999999999999999999999996 58999999999
Q ss_pred EEcccccc
Q 017842 354 NVAEDRQR 361 (365)
Q Consensus 354 ~~a~~~~~ 361 (365)
.||.++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99998765
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=9.8e-18 Score=131.36 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=71.9
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc--cCCeeEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN--LDGRAIRV 353 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~--l~gr~l~V 353 (365)
..|+.+|||+|||+.+++++|+++|+.||.|..|++++ .||||||+|.+.++|.+|+..|++.. +.||+|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34566999999999999999999999999999999985 37999999999999999999999885 78999999
Q ss_pred EEccccc
Q 017842 354 NVAEDRQ 360 (365)
Q Consensus 354 ~~a~~~~ 360 (365)
+|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998763
No 105
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=7.8e-18 Score=135.65 Aligned_cols=105 Identities=22% Similarity=0.375 Sum_probs=92.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|+.||.|..+. +.. .+.++|||||+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~--------------------------i~~---~~~~~g~afV~f~ 55 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIR--------------------------VGN---TPETRGTAYVVYE 55 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEC---STTTTTCEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------Eee---CCCCCcEEEEEEC
Confidence 44678999999999999999999999999999887 443 3456999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCcHHHHHHHHhccCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGK 305 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~ 305 (365)
+.++|.+|+..|||..++|+.|+|.++.+.... ++++...++++|.++|+.||.
T Consensus 56 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~----------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 56 DIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF----------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp SHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----------------hhhhHhHhHHHHHHHHHHhCC
Confidence 999999999999999999999999998765432 477888999999999999974
No 106
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=8.7e-18 Score=133.38 Aligned_cols=84 Identities=29% Similarity=0.414 Sum_probs=77.2
Q ss_pred CCCceEEEeCCCCcC------cHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-
Q 017842 277 EPGFRIYVGNLPWEV------DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR- 349 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~------tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr- 349 (365)
...++|||+|||+.+ ++++|+++|+.||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|.||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345699999999999 889999999999999999998 36789999999999999999999999999999999
Q ss_pred eEEEEEccccccC
Q 017842 350 AIRVNVAEDRQRR 362 (365)
Q Consensus 350 ~l~V~~a~~~~~~ 362 (365)
+|+|.+|.+..+-
T Consensus 91 ~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 91 TFRVNLFTDFDKY 103 (105)
T ss_dssp EEEEECSCCCCCC
T ss_pred eEEEEEcchHhhh
Confidence 9999999877653
No 107
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-18 Score=137.68 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=78.2
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|| .|||..|.|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 469999999999999999999999999999999999999999999999999999999999 8999999999999999987
Q ss_pred ccc
Q 017842 359 RQR 361 (365)
Q Consensus 359 ~~~ 361 (365)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 654
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=132.16 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=71.7
Q ss_pred CCCceEEEeCCCC-cCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCC--ccCCeeEEE
Q 017842 277 EPGFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ--NLDGRAIRV 353 (365)
Q Consensus 277 ~~~~~lfV~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~--~l~gr~l~V 353 (365)
.+.++|||+|||+ .+++++|+++|+.||.|..|+|+++ +|||||+|.+.++|.+|+..|++. .|.||+|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4567999999999 9999999999999999999999865 689999999999999999998864 599999999
Q ss_pred EEcccccc
Q 017842 354 NVAEDRQR 361 (365)
Q Consensus 354 ~~a~~~~~ 361 (365)
.||+.+++
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99996553
No 109
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-17 Score=131.83 Aligned_cols=83 Identities=25% Similarity=0.512 Sum_probs=77.7
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc--------C
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL--------D 347 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l--------~ 347 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++++ ++.++|||||+|.+.++|.+|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999999998 899999999999999999999999999999 6
Q ss_pred CeeEEEEEcccc
Q 017842 348 GRAIRVNVAEDR 359 (365)
Q Consensus 348 gr~l~V~~a~~~ 359 (365)
|++|+|.||.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999865
No 110
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-18 Score=131.83 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=76.1
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+++++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999988754
No 111
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.9e-18 Score=135.59 Aligned_cols=85 Identities=34% Similarity=0.591 Sum_probs=79.9
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||.. ++..|.|++|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3446999999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 988754
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.5e-18 Score=133.59 Aligned_cols=82 Identities=43% Similarity=0.785 Sum_probs=74.2
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
++|||+|||+.+++++|+++|+.||.|..|++.+++.+|+++|||||+|.+.+ |.+|+..|||..++|++|+|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999999999999999999999 99999999999999999999999877
Q ss_pred ccC
Q 017842 360 QRR 362 (365)
Q Consensus 360 ~~~ 362 (365)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 113
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=128.00 Aligned_cols=88 Identities=28% Similarity=0.394 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
.+.++|||+|||+++++++|+.+|+.||.|..+. ++.+..+++++|||||+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~ 59 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELH--------------------------YPIDSLTKKPKGFAFVTFMF 59 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEE--------------------------CCCCTTTCCCCSEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE--------------------------EEecCCCCCcCeEEEEEECC
Confidence 3578999999999999999999999999998887 77777789999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE 270 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~ 270 (365)
.++|.+|+..|||..|.|+.|+|.++.++.....
T Consensus 60 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 93 (99)
T 1whw_A 60 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQ 93 (99)
T ss_dssp HHHHHHHHHHTTTEESSSCEEEEEECCCCSTTCC
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEEcCCCccccc
Confidence 9999999999999999999999999988765443
No 114
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=2.1e-18 Score=170.20 Aligned_cols=85 Identities=24% Similarity=0.559 Sum_probs=80.4
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+..++.++|||||+|.+..+|.+||..|||..|.|+.|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 017842 357 EDRQR 361 (365)
Q Consensus 357 ~~~~~ 361 (365)
..+..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87653
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-18 Score=127.23 Aligned_cols=76 Identities=33% Similarity=0.636 Sum_probs=73.4
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
++|||+|||+.+++++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|+..++ ..++|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999999899999999999999999999999888 9999999999987
No 116
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=7.4e-18 Score=129.88 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccC--CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAG--TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
.+|||||||+++++++|+++|+.|| .|..++ ++.++.+|+++|||||+|.+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~--------------------------i~~~~~~g~~kG~afV~f~~~ 55 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK--------------------------FFENRANGQSKGFALVGVGSE 55 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEE--------------------------EEECTTTCCEEEEEEECC-CH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEE--------------------------EEecCCCCccCcEEEEEECCH
Confidence 4899999999999999999999999 888877 788888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
++|.+|+..|||..|+|+.|+|.++.+...
T Consensus 56 ~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 56 ASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp HHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred HHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 999999999999999999999999887654
No 117
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=130.65 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=72.5
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCC--ccCCeeEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQ--NLDGRAIRV 353 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~--~l~gr~l~V 353 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|+++ ||||||+|.+.++|.+|+..|++. .+.||+|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999999853 799999999999999999988654 599999999
Q ss_pred EEccccccC
Q 017842 354 NVAEDRQRR 362 (365)
Q Consensus 354 ~~a~~~~~~ 362 (365)
.|++.+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999876643
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.3e-17 Score=126.48 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=69.5
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
...|||+||++.+|+++|+++|..||.|..+++.. ++|||||+|.+.++|.+|++.|||..+.||+|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45899999999999999999999999999999964 59999999999999999999999999999999999985
No 119
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.9e-17 Score=125.38 Aligned_cols=86 Identities=28% Similarity=0.566 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|++||.|..+. +..+..+++++|||||+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~--------------------------i~~~~~~~~~~g~afV~f~~ 56 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIV--------------------------LMKDSDTGRSKGYGFITFSD 56 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------EECCSSSCCCCSEEEEEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE--------------------------EeecCCCCceeeEEEEEECC
Confidence 4678999999999999999999999999999887 77787889999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
.++|.+|+..|||..|+|+.|+|.++.++...
T Consensus 57 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 57 SECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp HHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred HHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 99999999999999999999999999877554
No 120
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=125.46 Aligned_cols=79 Identities=28% Similarity=0.596 Sum_probs=73.8
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|. +|||||+|.+.++|.+|+..|||..+.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456799999999999999999999999999999997 689999999999999999999999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
+++.+++
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9887653
No 121
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=129.52 Aligned_cols=84 Identities=21% Similarity=0.472 Sum_probs=76.2
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.| +++++ .+++++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456799999999999999999999999977 56666 6789999999999999999999999999999999999999
Q ss_pred ccccccCC
Q 017842 356 AEDRQRRS 363 (365)
Q Consensus 356 a~~~~~~~ 363 (365)
+.++.+++
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 99887654
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=133.10 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCceEEEeCCCCcCcHHHHH---HHHhccCCeEEEEEEeeCCCC---CcceEEEEEecCHHHHHHHHHHhCCCccCCeeE
Q 017842 278 PGFRIYVGNLPWEVDNARLE---QVFSEHGKVVNARVVYDRETG---RSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 351 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~---~~F~~~G~V~~v~i~~d~~~~---~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l 351 (365)
..++|||+|||+.+++++|+ ++|+.||.|..|+|+++..++ +++|||||+|.+.++|.+|+..|||..|.||+|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 34599999999999999999 999999999999999887643 567999999999999999999999999999999
Q ss_pred EEEEcccccc
Q 017842 352 RVNVAEDRQR 361 (365)
Q Consensus 352 ~V~~a~~~~~ 361 (365)
+|.||.++..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999998874
No 123
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-17 Score=126.67 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=74.2
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC--CeeEEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD--GRAIRVN 354 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~--gr~l~V~ 354 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|+..|||..+. |++|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45569999999999999999999999999999999754 789999999999999999999999999 9999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
|+++++.+
T Consensus 89 ~a~~~~~~ 96 (97)
T 1why_A 89 FAKSGPSS 96 (97)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99988764
No 124
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-18 Score=132.11 Aligned_cols=81 Identities=19% Similarity=0.385 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeE--EEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVE--IAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
.-.||||+|||+++|+++|+++|++||.+. .++ +++++.+++++|||||+|.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~--------------------------i~~d~~tg~srG~aFV~f~ 61 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIR--------------------------LIKDKQTQQNRGFAFVQLS 61 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEE--------------------------CCCCSSSSSCSSEEEEECS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEE--------------------------EEecCCCCCCceEeEEEEC
Confidence 356999999999999999999999999653 444 7888999999999999999
Q ss_pred CHHHHHHHHHHHccCc----ccCeeEEEeecCC
Q 017842 236 TVEEAEKAVEMFHRYD----IDGRLLTVNKAAP 264 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~----~~gr~l~V~~a~~ 264 (365)
+.++|.+|+..|||.. ++||.|.|.++..
T Consensus 62 ~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 62 SAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 9999999999999974 8999999999864
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=135.24 Aligned_cols=82 Identities=18% Similarity=0.372 Sum_probs=74.3
Q ss_pred CCCCceEEEeCCCCcCcHHHHH----HHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLE----QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 351 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~----~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l 351 (365)
..+.++|||+|||+.+++++|+ ++|+.||.|..|.+.+ +++++|||||+|.+.++|.+|+..|||..|.||+|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456799999999999999866 7999999999998853 57889999999999999999999999999999999
Q ss_pred EEEEccccc
Q 017842 352 RVNVAEDRQ 360 (365)
Q Consensus 352 ~V~~a~~~~ 360 (365)
+|.||+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998765
No 126
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=125.17 Aligned_cols=82 Identities=27% Similarity=0.453 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+.++|||+|||+++++++|+.+|+.||.|..+. +..+..++.++|||||+|.+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDAR--------------------------VVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTTCCEEEEEEEEESSH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE--------------------------EEecCCCCccceEEEEEECCH
Confidence 568999999999999999999999999999887 777878999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
++|.+|+..|||..++|+.|+|.++.++
T Consensus 59 ~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 59 WDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred HHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999998764
No 127
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=132.51 Aligned_cols=84 Identities=31% Similarity=0.593 Sum_probs=77.5
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
.....++|||+|||+.+++++|+++|+.||.|..|+|.++. +.++|||||+|.+.++|.+|+..|||..++|++|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556799999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred Eccccc
Q 017842 355 VAEDRQ 360 (365)
Q Consensus 355 ~a~~~~ 360 (365)
+|+++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998764
No 128
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.4e-17 Score=127.94 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=72.9
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh--CCCccCCeeEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL--DGQNLDGRAIRV 353 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l--~~~~l~gr~l~V 353 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|+++ +|||||+|.+.++|.+|+..| ++..+.||+|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345679999999999999999999999999999999864 899999999999999999977 567899999999
Q ss_pred EEccccccC
Q 017842 354 NVAEDRQRR 362 (365)
Q Consensus 354 ~~a~~~~~~ 362 (365)
.||+.+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999977643
No 129
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.6e-17 Score=126.62 Aligned_cols=87 Identities=34% Similarity=0.645 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|..||.|..+. ++.+..+++++|||||+|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~ 60 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVV--------------------------MIYDAEKQRPRGFGFITFE 60 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEE--------------------------ECCCTTTCSCCSEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEeCCCCCCCCceEEEEEC
Confidence 34578999999999999999999999999999887 7778888999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+. |+|..|+|+.|+|.++.++....
T Consensus 61 ~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 61 DEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp SHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCC
T ss_pred CHHHHHHHHH-hCCCEECCeEEEEEECCCCcccC
Confidence 9999999999 79999999999999998776543
No 130
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.8e-18 Score=135.59 Aligned_cols=87 Identities=23% Similarity=0.402 Sum_probs=75.6
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|.+..+..+++++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567999999999999999999999999985443333333788999999999999999999999999999999999999
Q ss_pred ccccccC
Q 017842 356 AEDRQRR 362 (365)
Q Consensus 356 a~~~~~~ 362 (365)
|.++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9987654
No 131
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=4.5e-17 Score=126.91 Aligned_cols=84 Identities=23% Similarity=0.520 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+.++|||+|||+++++++|+.+|++||.|..++ +..+..+++++|||||+|.+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~~~ 54 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLK--------------------------MMFDPQTGRSKGYAFIEFRDL 54 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------CCBCTTTCCBCSEEEEEESSH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEeCCCCCccceEEEEEECCH
Confidence 367999999999999999999999999999887 777778899999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
++|.+|+..|||..|+|+.|+|.++.++..
T Consensus 55 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 55 ESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 999999999999999999999999987653
No 132
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=127.89 Aligned_cols=84 Identities=32% Similarity=0.570 Sum_probs=77.1
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+++++|+++|+.| ..|++++++.+++++|||||+|.+.++|.+||..|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4456799999999999999999999977 3788888888999999999999999999999999999999999999999
Q ss_pred ccccccC
Q 017842 356 AEDRQRR 362 (365)
Q Consensus 356 a~~~~~~ 362 (365)
|+++..+
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9988764
No 133
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=4e-17 Score=123.98 Aligned_cols=82 Identities=29% Similarity=0.481 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..+.++|||+|||+++++++|+++|++||.|..+. ++.+..+++++|||||+|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~ 57 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ--------------------------IPLDYETEKHRGFAFVEFE 57 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEE--------------------------CCEETTTTEECSEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEE--------------------------EEECCCCCccccEEEEEEC
Confidence 34678999999999999999999999999999887 7777789999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
+.++|.+|+..|||..++|+.|+|.++.
T Consensus 58 ~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 58 LAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 9999999999999999999999999863
No 134
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=9.9e-17 Score=129.13 Aligned_cols=88 Identities=26% Similarity=0.455 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|..||.|..+. ++.+..++.++|||||+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~ 65 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR--------------------------VVKDMATGKSKGYGFVSFF 65 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTTCCEEEEEEEEES
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEEcCCCCCcceEEEEEEC
Confidence 44678999999999999999999999999998887 7778789999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+..|||..|.|+.|+|.++.++....
T Consensus 66 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 66 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp SHHHHHHHHHHTTTCEETTEECEEEESSCCCCCS
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCC
Confidence 9999999999999999999999999998776544
No 135
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=135.75 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=77.1
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec
Q 017842 355 VA 356 (365)
Q Consensus 355 ~a 356 (365)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 136
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=5.2e-17 Score=122.75 Aligned_cols=81 Identities=33% Similarity=0.566 Sum_probs=76.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
.+|||+|||+++++++|+.+|+.||.|..+. ++.+..+++++|||||+|.+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~--------------------------i~~~~~~~~~~g~afV~f~~~~~ 55 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGH--------------------------VMWDMQTGSSRGYGFVSFTSQDD 55 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEE--------------------------EEECTTTCCEEEEEEEEESCHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EEEcCCCCCccceEEEEECCHHH
Confidence 5899999999999999999999999999887 77788899999999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
|.+|+..|||..++|+.|+|.++.++.
T Consensus 56 a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 56 AQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 999999999999999999999988653
No 137
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=133.34 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=73.7
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCeeEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD--GQNLDGRAIRV 353 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~--~~~l~gr~l~V 353 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|+|+++ ||||||+|.+.++|.+|+..|+ +..|.||+|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345679999999999999999999999999999999875 8999999999999999999887 46899999999
Q ss_pred EEccccccC
Q 017842 354 NVAEDRQRR 362 (365)
Q Consensus 354 ~~a~~~~~~ 362 (365)
.||+.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999987654
No 138
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.5e-18 Score=137.48 Aligned_cols=83 Identities=25% Similarity=0.465 Sum_probs=76.9
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||..|+||.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456799999999999999999999999999997777777899999999999999999999999 999999999999999
Q ss_pred cccc
Q 017842 356 AEDR 359 (365)
Q Consensus 356 a~~~ 359 (365)
|..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8764
No 139
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=131.24 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=76.4
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
...++|||+|||+.+++++|+++|+.||. ..|+|++++ +++++|||||+|.+.++|.+||. +|+..|.||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 34569999999999999999999999994 599999997 89999999999999999999996 8999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
....+.+
T Consensus 90 ~~~~~~~ 96 (102)
T 1wez_A 90 STAGTSG 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8776543
No 140
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=9.8e-17 Score=129.21 Aligned_cols=89 Identities=28% Similarity=0.471 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
..+..++|||+|||+++++++|+.+|..||.|..++ ++.+..+++++|||||+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f 74 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK--------------------------VFIDKQTNLSKCFGFVSY 74 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEE--------------------------EEECSSSCSEEEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEECCCCCCcCccEEEEE
Confidence 334578999999999999999999999999999887 777888999999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
.+.++|.+|+..|||..|.|+.|+|.++.++....
T Consensus 75 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 75 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCC
Confidence 99999999999999999999999999998776543
No 141
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.8e-17 Score=127.89 Aligned_cols=87 Identities=29% Similarity=0.355 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..+. +..+..++.++|||||+|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~ 64 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVY--------------------------IPREPHTKAPRGFAFVRFHD 64 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------CCBCSSSCSBCSCEEEEESS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEeCCCCCCCCeEEEEEECC
Confidence 4578999999999999999999999999998887 77788889999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
.++|.+|+..|||..|+|+.|+|.++.+.....
T Consensus 65 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 65 RRDAQDAEAAMDGAELDGRELRVQVARYGRRDL 97 (103)
T ss_dssp SSHHHHHHHHHSSCCBTTBCCEEEECSSCCSCC
T ss_pred HHHHHHHHHHcCCCEECCcEEEEEECCcCCCCC
Confidence 999999999999999999999999998765443
No 142
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-17 Score=126.44 Aligned_cols=87 Identities=26% Similarity=0.433 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCC---CCCccceEEEE
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRE---TDRSRGFGFVT 233 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~afV~ 233 (365)
.+.++|||+|||+++++++|+.+|+.||.|..+. +..+.. +++++|||||+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~gt~~~~g~afV~ 56 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCT--------------------------ISKKKNKAGVLLSMGFGFVE 56 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEEEECTTCCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCCCcCcccEEEEE
Confidence 3578999999999999999999999999999887 555554 56899999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
|.+.++|.+|+..|||..|+|+.|+|.++.++....
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 57 YKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 92 (98)
T ss_dssp ESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence 999999999999999999999999999998765443
No 143
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=126.68 Aligned_cols=87 Identities=21% Similarity=0.424 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEE-EEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIA-EVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
.+.++|||+|||+++++++|+.+|+.||.|..+ + ++.+..++.++|||||+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~--------------------------i~~~~~~g~~~g~afV~f~ 56 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPK--------------------------IMRDPDTGNSKGYAFINFA 56 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCE--------------------------ECCCTTTCSCCSEEEEEBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE--------------------------EEEcCCCCCcCeEEEEEEC
Confidence 357899999999999999999999999999876 6 7777789999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+..|||..|.|+.|+|.++.++....
T Consensus 57 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 57 SFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 90 (96)
T ss_dssp SHHHHHHHHHTTTTCEETTEECEEEESCCCCCCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEEecccCCCC
Confidence 9999999999999999999999999998776543
No 144
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=127.73 Aligned_cols=88 Identities=27% Similarity=0.489 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|..||.|..++ ++.+..++.++|||||+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~ 65 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR--------------------------VVLHPDTEHSKGCAFAQFM 65 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------CCBCSSSCCBCSEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCCCccEEEEEEC
Confidence 34678999999999999999999999999998887 7778889999999999999
Q ss_pred CHHHHHHHHHHHc------cCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFH------RYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~ln------g~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+..|| |..|+|+.|+|.++.++....
T Consensus 66 ~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 66 TQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred CHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 9999999999999 999999999999998775543
No 145
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=128.39 Aligned_cols=87 Identities=29% Similarity=0.472 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..+. ++.+..+++++|||||+|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~ 63 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ--------------------------IPLDYETEKHRGFAFVEFEL 63 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEE--------------------------CCCCSSSCCCSSEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEE--------------------------EEecCCCCCcceEEEEEECC
Confidence 4578999999999999999999999999998887 77777889999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
.++|.+|+..|||..|.|+.|+|.++.++....
T Consensus 64 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 64 AEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp HHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 999999999999999999999999998776544
No 146
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.9e-17 Score=125.81 Aligned_cols=80 Identities=25% Similarity=0.459 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
...++|||+|||+.+++++|+++|+.||.|. ++++.+ +++|||||+|.+.++|.+|+..|||..+.|++|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4456999999999999999999999999997 677654 56999999999999999999999999999999999999
Q ss_pred ccccc
Q 017842 357 EDRQR 361 (365)
Q Consensus 357 ~~~~~ 361 (365)
+++.+
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 147
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.8e-17 Score=127.19 Aligned_cols=87 Identities=36% Similarity=0.682 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..+.++|||+|||+++++++|+.+|+.||.|..+. ++.+..++.++|||||+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~ 62 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVV--------------------------VVKDRETQRSRGFGFVTFE 62 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEE--------------------------ECCCSSSCSCCSEEEEECS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEeCCCCCCcccEEEEEEC
Confidence 34578999999999999999999999999999887 7777788999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 63 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 63 NIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp SHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999999999999999999876544
No 148
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=1e-17 Score=131.87 Aligned_cols=82 Identities=28% Similarity=0.391 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEE
Q 017842 158 EDAKLFVGNLPY------DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGF 231 (365)
Q Consensus 158 ~~~tvfVgnLp~------~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~af 231 (365)
..++|||+|||+ ++++++|+.+|++||.|..++ ++++..+++++||||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~--------------------------i~~d~~tg~~kG~af 58 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNME--------------------------FPIDEATGKTKGFLF 58 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEE--------------------------CCEETTTTEECSEEE
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEE--------------------------EEEcCCCCccceEEE
Confidence 367999999999 999999999999999999887 788888999999999
Q ss_pred EEeCCHHHHHHHHHHHccCcccC-eeEEEeecCCC
Q 017842 232 VTMSTVEEAEKAVEMFHRYDIDG-RLLTVNKAAPR 265 (365)
Q Consensus 232 V~f~~~e~a~~Al~~lng~~~~g-r~l~V~~a~~~ 265 (365)
|+|.+.++|.+|+..|||..|.| +.|+|.++.++
T Consensus 59 V~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 59 VECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp EEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred EEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 99999999999999999999999 99999988654
No 149
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=126.56 Aligned_cols=88 Identities=31% Similarity=0.481 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+...++|||+|||+++++++|+.+|+.||.|..+. +..+..++.++|||||+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f 64 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTH--------------------------MPKDRVTGQHQGYGFVEF 64 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEE--------------------------CCBCSSSCSBCSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCcCCcEEEEEE
Confidence 344678999999999999999999999999998887 777778899999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
.+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 65 LSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp SSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 9999999999999999999999999999876543
No 150
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.8e-17 Score=127.90 Aligned_cols=87 Identities=25% Similarity=0.414 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..+.++|||+|||+++++++|+.+|+.||.|..+. ++.+..++.++|||||+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~ 65 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIY--------------------------LAKDKTTGQSKGFAFISFH 65 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEE--------------------------EEECSSSCSEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE--------------------------EeecCCCCceeeEEEEEEC
Confidence 34578999999999999999999999999999887 7778889999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 66 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 66 RREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp SHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred CHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 999999999999999999999999999876543
No 151
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=124.87 Aligned_cols=85 Identities=24% Similarity=0.428 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|..||.|..++ +..+. +++++|||||+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~-~g~~~g~afV~f~ 66 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLR--------------------------LVTNR-AGKPKGLAYVEYE 66 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------EEECT-TSCEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE--------------------------EEECC-CCCEEeEEEEEEC
Confidence 44678999999999999999999999999999887 66666 8899999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+.++|.+|+..|||..|+|+.|+|.++.++..
T Consensus 67 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 67 NESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp SHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999987653
No 152
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.5e-17 Score=128.92 Aligned_cols=79 Identities=28% Similarity=0.354 Sum_probs=73.6
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC-----eeE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG-----RAI 351 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g-----r~l 351 (365)
...++|||+|||+.+++++|+++|..||.|..|+|+++ |||||+|.+.++|.+||..|||..|.| ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34579999999999999999999999999999999865 899999999999999999999999999 999
Q ss_pred EEEEccccccC
Q 017842 352 RVNVAEDRQRR 362 (365)
Q Consensus 352 ~V~~a~~~~~~ 362 (365)
+|.+|.++.+.
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999987653
No 153
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.6e-17 Score=124.57 Aligned_cols=79 Identities=27% Similarity=0.515 Sum_probs=73.1
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|. +|||||+|.+.++|.+|+..|||..+.|++|+|.|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 455699999999999999999999999999999997 459999999999999999999999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
+++.+..
T Consensus 80 ~~~~~~~ 86 (92)
T 2dgt_A 80 TSRLRTA 86 (92)
T ss_dssp SCCCSCC
T ss_pred cCCCCCC
Confidence 9877643
No 154
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.9e-17 Score=128.34 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=76.0
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEE-EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN-ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~-v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
...++|||+|||+.+++++|+++|+.||.|.. |+|+++ .+|+++|||||+|.+.++|.+||.. |+..|+||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44569999999999999999999999999997 889888 7899999999999999999999996 99999999999999
Q ss_pred ccccc
Q 017842 356 AEDRQ 360 (365)
Q Consensus 356 a~~~~ 360 (365)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 155
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-17 Score=129.02 Aligned_cols=80 Identities=20% Similarity=0.488 Sum_probs=74.7
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
...++|||+|||+.+++++|+.+|+.||.|..|+|.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34569999999999999999999999999999999866 899999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
++++..
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 987754
No 156
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=8.5e-17 Score=125.81 Aligned_cols=79 Identities=24% Similarity=0.446 Sum_probs=72.2
Q ss_pred cCCCCceEEEeCCCC-cCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 275 VFEPGFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
...+.++|||+|||+ .+++++|+++|+.||.|..|+|. +|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567999999998 99999999999999999999983 899999999999999999999999999999999
Q ss_pred EEcccccc
Q 017842 354 NVAEDRQR 361 (365)
Q Consensus 354 ~~a~~~~~ 361 (365)
.|++.+.|
T Consensus 90 ~~a~~~~r 97 (97)
T 2xnq_A 90 EVSSSNAR 97 (97)
T ss_dssp EECCCCC-
T ss_pred EecCCCCC
Confidence 99987754
No 157
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=133.52 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=76.7
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCe-EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKV-VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V-~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
.+.++|||+|||+.+++++|+++|+.||.| ..|+|++++ +++++|||||+|.+.++|.+||.. |+..|.||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 445699999999999999999999999999 899999998 899999999999999999999995 99999999999999
Q ss_pred ccccc
Q 017842 356 AEDRQ 360 (365)
Q Consensus 356 a~~~~ 360 (365)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98654
No 158
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=124.49 Aligned_cols=81 Identities=27% Similarity=0.460 Sum_probs=73.9
Q ss_pred CcCCCCceEEEeCCCCcCcHHHHHHHHhcc--CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeE
Q 017842 274 RVFEPGFRIYVGNLPWEVDNARLEQVFSEH--GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 351 (365)
Q Consensus 274 ~~~~~~~~lfV~nLp~~~tee~L~~~F~~~--G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l 351 (365)
....+.++|||+|||+.+++++|+++|+.| |.|..|++. +|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344566799999999999999999999999 999999875 6799999999999999999999999999999
Q ss_pred EEEEccccccC
Q 017842 352 RVNVAEDRQRR 362 (365)
Q Consensus 352 ~V~~a~~~~~~ 362 (365)
+|.|++++.+.
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpd_A 82 EVTLAKPVDKD 92 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999987764
No 159
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.9e-17 Score=124.42 Aligned_cols=84 Identities=29% Similarity=0.489 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+.+.++|||+|||+++++++|+.+|+.||.|..+. ++.+..+++++|||||+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~--------------------------i~~~~~~~~~~g~afV~f 64 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS--------------------------IVYDQQSRRSRGFAFVYF 64 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEE--------------------------EEECSSSSSEEEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EEEcCCCCCcccEEEEEE
Confidence 345678999999999999999999999999999887 777888899999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
.+.++|.+|+..|||..|+|+.|+|.++..
T Consensus 65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 65 ENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 999999999999999999999999998764
No 160
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-17 Score=127.75 Aligned_cols=83 Identities=25% Similarity=0.362 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|+.||.|..+. +..+..++.++|||||+|.+.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~~ 75 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH--------------------------LNLDRRTGYLKGYTLVEYETY 75 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTTSSEEEEEEEEESCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEE--------------------------EEecCCCCceeeEEEEEECCH
Confidence 467999999999999999999999999999887 778888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
++|.+|+..|||..|+|+.|+|.++.++.
T Consensus 76 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 76 KEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 99999999999999999999999987654
No 161
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=125.88 Aligned_cols=88 Identities=27% Similarity=0.459 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEec-CCCCCccceEEEEe
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYN-RETDRSRGFGFVTM 234 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~afV~f 234 (365)
....++|||+|||+++++++|+.+|..||.|..++ ++.+ ..++.++|||||+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~~g~afV~f 65 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVR--------------------------LPKKMTGTGAHRGFGFVDF 65 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------CCCCCSSSCSSCSEEEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEE--------------------------EecCCCCCCCcCceEEEEE
Confidence 34578999999999999999999999999999887 6666 67899999999999
Q ss_pred CCHHHHHHHHHHH-ccCcccCeeEEEeecCCCCCCC
Q 017842 235 STVEEAEKAVEMF-HRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 235 ~~~e~a~~Al~~l-ng~~~~gr~l~V~~a~~~~~~~ 269 (365)
.+.++|.+|+..| ||..|.|+.|+|.++.++....
T Consensus 66 ~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 66 ITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp SSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred CCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 9999999999999 9999999999999998775543
No 162
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-18 Score=132.64 Aligned_cols=85 Identities=28% Similarity=0.434 Sum_probs=77.8
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|.. .++++..+++++|||||+|.+.++|.+|+. |||..+.|++|+|.+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34679999999999999999999999999888 677777789999999999999999999999 9999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
.++..++
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 9877643
No 163
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=5.6e-17 Score=130.60 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=74.9
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
++++|||+|||+.+++++|+.+|+.||.|..|+|+++ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4569999999999999999999999999999999976 4569999999999999999999999999999999999998
Q ss_pred cccc
Q 017842 358 DRQR 361 (365)
Q Consensus 358 ~~~~ 361 (365)
++..
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7543
No 164
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=126.28 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEE--------EEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCc
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI--------AEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRS 226 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
.+...++|||+|||+++++++|+.+|++||.|.. ++ ++.++.++++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~--------------------------i~~~~~~g~~ 62 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMIN--------------------------LYTDRETGKL 62 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEE--------------------------EEECTTTCSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEE--------------------------EEecCCCCCe
Confidence 4556889999999999999999999999999988 66 7788889999
Q ss_pred cceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 227 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 227 ~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
+|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 63 ~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 63 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 9999999999999999999999999999999999863
No 165
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.3e-17 Score=123.57 Aligned_cols=78 Identities=29% Similarity=0.631 Sum_probs=72.3
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|. +|||||+|.+.++|.+|+..|||..+.|++|+|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 345699999999999999999999999999999997 459999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.++.++
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 977654
No 166
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=125.38 Aligned_cols=88 Identities=33% Similarity=0.441 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+...++|||+|||+++++++|+.+|..||.|..+. ++.+ ++.++|||||+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~--~g~~~g~afV~f 62 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAK--------------------------VMME--GGRSKGFGFVCF 62 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEE--------------------------EEEC--SSSEEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEcC--CCCcCEEEEEEE
Confidence 344678999999999999999999999999999887 5555 788999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE 270 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~ 270 (365)
.+.++|.+|+..|||..|.|+.|+|.++.++.....
T Consensus 63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 63 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQS 98 (103)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCCC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCCC
Confidence 999999999999999999999999999988765443
No 167
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2e-17 Score=134.15 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=75.6
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCC---eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGK---VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~---V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
...++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. ||+..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34569999999999999999999999998 89999999976 9999999999999999999999 9999999999999
Q ss_pred EEcccc
Q 017842 354 NVAEDR 359 (365)
Q Consensus 354 ~~a~~~ 359 (365)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998644
No 168
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=129.13 Aligned_cols=78 Identities=31% Similarity=0.562 Sum_probs=73.8
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
++|||+|||+.+++++|+++|+.||.|..|+|+++ ++|||||+|.+.++|.+|+..|||..+.|++|+|.|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999877 6899999999999999999999999999999999999987
Q ss_pred ccC
Q 017842 360 QRR 362 (365)
Q Consensus 360 ~~~ 362 (365)
.+.
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 754
No 169
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=127.31 Aligned_cols=85 Identities=32% Similarity=0.632 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
++..++|||+|||+++++++|+.+|+.||.|..+. ++.+..+++++|||||+|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~F~ 76 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ--------------------------LMMDSETGRSKGYGFITFS 76 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEE--------------------------EEEETTTTEEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEEcCCCCccceEEEEEEC
Confidence 44578999999999999999999999999999887 7778889999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
+.++|.+|+..|||..|+|+.|+|.++.++.
T Consensus 77 ~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 77 DSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp CHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 9999999999999999999999999987653
No 170
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.5e-17 Score=126.72 Aligned_cols=81 Identities=30% Similarity=0.527 Sum_probs=74.6
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3455679999999999999999999999999999999854 7999999999999999999999999999999999
Q ss_pred Ecccccc
Q 017842 355 VAEDRQR 361 (365)
Q Consensus 355 ~a~~~~~ 361 (365)
|+.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9998764
No 171
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=123.07 Aligned_cols=83 Identities=23% Similarity=0.439 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCC-ccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDR-SRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~afV~f~~ 236 (365)
..++|||+|||+++++++|+.+|+.||.|..+. +..+..++. ++|||||+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~--------------------------i~~~~~~~~~~~g~afV~f~~ 56 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMID--------------------------MPVERMHPHLSKGYAYVEFEN 56 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEE--------------------------CCEETTEEEEECSEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EEeCCCCCCCCCcEEEEEEec
Confidence 467999999999999999999999999999887 555655555 89999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
.++|.+|+..|||..++|+.|+|.++.++.
T Consensus 57 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 57 PDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred HHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 999999999999999999999999987654
No 172
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1e-17 Score=124.21 Aligned_cols=75 Identities=24% Similarity=0.457 Sum_probs=72.3
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
+|||+|||+.+++++|+++|+.||.|..|++++++.+++++|||||+|.+.++|.+|+. +++..+.|++|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999999 6999999999999986
No 173
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=124.91 Aligned_cols=73 Identities=32% Similarity=0.479 Sum_probs=68.3
Q ss_pred ceEEEeCCCCcC------cHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-eEE
Q 017842 280 FRIYVGNLPWEV------DNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGR-AIR 352 (365)
Q Consensus 280 ~~lfV~nLp~~~------tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr-~l~ 352 (365)
++|||+|||+.+ ++++|+++|+.||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|||..+.|| +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 789999999999999999988 45789999999999999999999999999999999 887
Q ss_pred EE
Q 017842 353 VN 354 (365)
Q Consensus 353 V~ 354 (365)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 174
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=3.1e-17 Score=127.88 Aligned_cols=82 Identities=22% Similarity=0.451 Sum_probs=75.7
Q ss_pred CCCceEEEeCCCCcCcHHHHH----HHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLE----QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~----~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
.++++|||+|||+.+++++|+ ++|+.||.|..|++.+ +|.++|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456699999999999999999 9999999999999874 477899999999999999999999999999999999
Q ss_pred EEEcccccc
Q 017842 353 VNVAEDRQR 361 (365)
Q Consensus 353 V~~a~~~~~ 361 (365)
|.|++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999997654
No 175
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=124.99 Aligned_cols=87 Identities=25% Similarity=0.408 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHc-cCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEK-AGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
+.+.++|||+|||+++++++|+.+|.. ||.|..+. ++.+. +++++|||||+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~--------------------------i~~~~-~g~~~g~afV~f 58 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK--------------------------VVLDQ-TGVSKGYGFVKF 58 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEE--------------------------EEECT-TCCEEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEE--------------------------EEECC-CCCccceEEEEE
Confidence 346789999999999999999999999 99998887 77777 899999999999
Q ss_pred CCHHHHHHHHHHHccCc-ccCeeEEEeecCCCCCCC
Q 017842 235 STVEEAEKAVEMFHRYD-IDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~-~~gr~l~V~~a~~~~~~~ 269 (365)
.+.++|.+|+..|+|.. |+|+.|+|.++.++....
T Consensus 59 ~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 59 TDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 94 (104)
T ss_dssp SCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCC
T ss_pred CCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCC
Confidence 99999999999999999 999999999997765543
No 176
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=128.11 Aligned_cols=88 Identities=25% Similarity=0.403 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeE--------EEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCcc
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVE--------IAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSR 227 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (365)
....++|||+|||+++++++|+.+|..||.|. .++ +..++.+++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~--------------------------i~~~~~~g~~~ 65 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIH--------------------------IYLDKETGKPK 65 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEE--------------------------CCBCTTTCSBC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEE--------------------------EEEeCCCCCee
Confidence 34578999999999999999999999999997 355 77788899999
Q ss_pred ceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 228 GFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 228 g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
|||||+|.+.++|.+|+..|||..|.|+.|+|.++.++....
T Consensus 66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 66 GDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp SEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCST
T ss_pred eEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCCC
Confidence 999999999999999999999999999999999998776543
No 177
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=2.6e-17 Score=136.81 Aligned_cols=80 Identities=26% Similarity=0.491 Sum_probs=75.5
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCC---eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGK---VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~---V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
..++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. ||+..|+||.|+|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4569999999999999999999999999 89999999987 9999999999999999999999 99999999999999
Q ss_pred Ecccc
Q 017842 355 VAEDR 359 (365)
Q Consensus 355 ~a~~~ 359 (365)
++..+
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98654
No 178
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=121.42 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=70.7
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh-CCCccCCeeEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL-DGQNLDGRAIRVN 354 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l-~~~~l~gr~l~V~ 354 (365)
..+.++|||+|||+.+++++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|+..| +|..+.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345569999999999999999999999999999999864 899999999999999999988 9999999999999
Q ss_pred Ecc
Q 017842 355 VAE 357 (365)
Q Consensus 355 ~a~ 357 (365)
||+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 179
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-17 Score=131.16 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=72.0
Q ss_pred CCCCceEEEeCCCCc-CcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCeeEE
Q 017842 276 FEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD--GQNLDGRAIR 352 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~--~~~l~gr~l~ 352 (365)
..+.++|||+|||+. +++++|+++|+.||.|..|+|++ ++|||||+|.+.++|.+|+..|+ +..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456779999999998 99999999999999999999974 38999999999999999999885 4569999999
Q ss_pred EEEcccccc
Q 017842 353 VNVAEDRQR 361 (365)
Q Consensus 353 V~~a~~~~~ 361 (365)
|.||..+.+
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999987654
No 180
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=8.6e-17 Score=128.56 Aligned_cols=96 Identities=25% Similarity=0.457 Sum_probs=80.3
Q ss_pred ccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCc-CcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecC
Q 017842 252 IDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS 330 (365)
Q Consensus 252 ~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s 330 (365)
..|..|+|..+....... ...+.++|||+|||+. +++++|+++|+.||.|..|+| ++|||||+|.+
T Consensus 5 ~~g~~~~~~~s~~~~~~~-----~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~ 71 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKND-----PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSN 71 (110)
T ss_dssp CCSCCCCCCCCCSCCSCC-----CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSS
T ss_pred CCCcccccccCCCCCCCC-----CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECC
Confidence 356677776555433221 2234469999999999 999999999999999999998 48999999999
Q ss_pred HHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 331 ETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 331 ~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
.++|.+|+..|||..|.|++|+|.|+..+.
T Consensus 72 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 72 ERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp SHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999998544
No 181
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=127.68 Aligned_cols=86 Identities=28% Similarity=0.497 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|+.||.|..+. +..+. ++.++|||||+|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~-~g~~~g~afV~F~ 56 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL--------------------------LIKDR-TSKSRGFAFITFE 56 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEE--------------------------EECST-TTTCCCEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEECC-CCCcccEEEEEEC
Confidence 34578999999999999999999999999999887 66666 8999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|+|+.|+|.++.++...
T Consensus 57 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 57 NPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp SHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 999999999999999999999999999876644
No 182
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=127.08 Aligned_cols=82 Identities=17% Similarity=0.437 Sum_probs=74.5
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|++|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 345699999999999999999999999988766 246889999999999999999999999999999999999999
Q ss_pred cccccCC
Q 017842 357 EDRQRRS 363 (365)
Q Consensus 357 ~~~~~~~ 363 (365)
.++.+.+
T Consensus 89 ~~~~~~~ 95 (96)
T 1fjc_A 89 GEKGGTR 95 (96)
T ss_dssp SSSCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 183
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=2.6e-16 Score=124.46 Aligned_cols=85 Identities=28% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..+. ++.+. ++.++|||||+|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~-~g~~~g~afV~f~~ 65 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT--------------------------VLRGP-DGSSKGCAFVKFSS 65 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------EEECS-SSCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEECC-CCCcCcEEEEEeCC
Confidence 3578999999999999999999999999999887 66665 78899999999999
Q ss_pred HHHHHHHHHHHccCcccC---eeEEEeecCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDG---RLLTVNKAAPRGTQ 268 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~g---r~l~V~~a~~~~~~ 268 (365)
.++|.+|+..|||..+.| +.|+|.++.++..+
T Consensus 66 ~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 66 HTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp HHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred HHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 999999999999999998 99999999877654
No 184
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=124.17 Aligned_cols=83 Identities=22% Similarity=0.478 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.++..++|||+|||+++++++|+++|+.||.|..+. +..+..+++++|||||+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~--------------------------i~~~~~~~~~~g~afV~f 65 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVT--------------------------IMKDKDTRKSKGVAFILF 65 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEE--------------------------ECCCSSSCCCTTCEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEeCCCCCCcccEEEEEE
Confidence 345678999999999999999999999999999887 777778899999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 66 ~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 66 LDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp SCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 99999999999999999999999999863
No 185
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-18 Score=139.77 Aligned_cols=86 Identities=26% Similarity=0.373 Sum_probs=80.8
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEE--------EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVN--------ARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG 348 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~--------v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g 348 (365)
.+.++|||+|||+.+++++|+++|+.||.|.. |+|++++.+++++|||||+|.+.++|.+|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34569999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eeEEEEEccccccC
Q 017842 349 RAIRVNVAEDRQRR 362 (365)
Q Consensus 349 r~l~V~~a~~~~~~ 362 (365)
++|+|.+|.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987654
No 186
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=7.6e-17 Score=128.69 Aligned_cols=80 Identities=20% Similarity=0.448 Sum_probs=73.0
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|+|. +|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34556799999999999999999999999999999997 7899999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
|+++++++
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99987764
No 187
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=4.3e-17 Score=130.70 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=71.0
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccC-CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHG-KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G-~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
.++|||+|||+.+++++|+++|+.|| .|..++|.. +.++|||||+|.+.++|.+|+..|||..|.||+|+|.++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 46999999999999999999999999 899999863 2479999999999999999999999999999999999998
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
.++
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 664
No 188
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=1.8e-16 Score=125.69 Aligned_cols=87 Identities=29% Similarity=0.419 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|++||.|..++ ++.+..+++++|||||+|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~ 63 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT--------------------------VLKDRFTGMHKGCAFLTYC 63 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEE--------------------------CCCCSSSCSCCSEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EEecCCCCCcceEEEEEEC
Confidence 34578999999999999999999999999999887 7778888999999999999
Q ss_pred CHHHHHHHHHHHccCcc---cCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDI---DGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~---~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..+ .|+.|+|.++.++...
T Consensus 64 ~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 64 ERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp SHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred CHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 99999999999999988 8999999999876543
No 189
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=1.2e-16 Score=131.71 Aligned_cols=88 Identities=27% Similarity=0.465 Sum_probs=80.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 154 VEPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 154 ~~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
..+.+.++|||+|||+++++++|+.+|+.||.|..+. ++.+..+++++|||||+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~--------------------------i~~d~~tg~~~G~afV~ 94 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS--------------------------IVYDQQSRRSRGFAFVY 94 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEE--------------------------EECCSSSSCCCCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCccceEEEEE
Confidence 3455688999999999999999999999999998887 77788889999999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
|.+.++|.+|+..|||..|+|+.|+|.++.++.+
T Consensus 95 F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 95 FENVDDAKEAKERANGMELDGRRIRVDFSITKRP 128 (129)
T ss_dssp ESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999999987653
No 190
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.4e-16 Score=121.98 Aligned_cols=81 Identities=20% Similarity=0.434 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||+|||+++++++|+.+|+.||.|..++ +..+..+++++|||||+|.+.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~~~ 59 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVT--------------------------ILCDKFSGHPKGFAYIEFSDKE 59 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEE--------------------------EEESCSSSSCCEEEEEEESSTH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EEecCCCCCcceEEEEEECCHH
Confidence 57999999999999999999999999999887 7778889999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
+|.+|+ .+||..|.|+.|+|.++.+..
T Consensus 60 ~a~~a~-~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 60 SVRTSL-ALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp HHHHHG-GGTTCEETTEECEEEETTTTS
T ss_pred HHHHHH-hcCCCEECCcEEEEEEccCCC
Confidence 999999 889999999999999987643
No 191
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=4.2e-17 Score=147.57 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=77.1
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccC--CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHG--KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G--~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
++|||+|||+.+|+++|+++|+.|| .|..|+|++++.+++++|||||+|.+.++|.+||..||+..|.||+|+|.+|.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999999999999999986
Q ss_pred cc
Q 017842 358 DR 359 (365)
Q Consensus 358 ~~ 359 (365)
+.
T Consensus 149 ~~ 150 (229)
T 3q2s_C 149 KQ 150 (229)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 192
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=129.74 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=73.0
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.| .|..|+|++++. |+++|||||+|.+.++|.+||. ||+..|+||.|+|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999975 9999999999999999999995 999999999999998865
Q ss_pred c
Q 017842 359 R 359 (365)
Q Consensus 359 ~ 359 (365)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 193
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.3e-16 Score=127.34 Aligned_cols=85 Identities=22% Similarity=0.320 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..+. ++.+..++.++|||||+|.+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~ 77 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH--------------------------LNLDRRTGFSKGYALVEYET 77 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------CCBCTTTSSBCSEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEecCCCCCcceEEEEEECC
Confidence 3568999999999999999999999999998887 77777899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.++|.+|+..|||..|+|+.|+|.++.++..
T Consensus 78 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 78 HKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred HHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 9999999999999999999999999876653
No 194
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.3e-16 Score=124.50 Aligned_cols=85 Identities=21% Similarity=0.451 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|..|| |..++ ++.+..+++++|||||+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~--------------------------i~~~~~~g~~~g~afV~f~ 64 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVR--------------------------LVRDKDTDKFKGFCYVEFD 64 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEE--------------------------EEECSSSCSEEEEEEEEES
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEE--------------------------EeecCCCCccceEEEEEEC
Confidence 34578999999999999999999999997 88877 7788889999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+ .|||..|.|+.|+|.++.++...
T Consensus 65 ~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 65 EVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred CHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 999999999 78999999999999999876544
No 195
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.2e-17 Score=127.40 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||||||+++|+++|+.+|+.||.|..++ ++.+.. ++++|||||+|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~--------------------------i~~d~~-g~~rG~aFV~F~ 60 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ--------------------------MRRTLH-KAFKGSIFVVFD 60 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEE--------------------------EECCCT-TSCCCEEEEEES
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEE--------------------------EEECCC-CCCccEEEEEEC
Confidence 33568999999999999999999999999999987 666766 899999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
+.++|.+|+. ++|..|+|+.|+|.++..
T Consensus 61 ~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 61 SIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 9999999999 699999999999987643
No 196
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.6e-17 Score=127.09 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=71.3
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..++|||+|||+.+++++|+++|+.||.|..|++. +++|||||+|.+.++|.+|+..|||..+.|++|+|.||+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34699999999999999999999999999999997 348999999999999999999999999999999999998
Q ss_pred cc
Q 017842 358 DR 359 (365)
Q Consensus 358 ~~ 359 (365)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 197
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=4.1e-17 Score=128.51 Aligned_cols=81 Identities=23% Similarity=0.545 Sum_probs=75.8
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..++|||+|||+.+++++|+++|+.||.|..|+|++++ +|+++|||||+|.+.++|.+|+. ++..|+|++|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34699999999999999999999999999999999998 89999999999999999999999 9999999999999998
Q ss_pred cccc
Q 017842 358 DRQR 361 (365)
Q Consensus 358 ~~~~ 361 (365)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6654
No 198
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.7e-17 Score=125.10 Aligned_cols=79 Identities=25% Similarity=0.515 Sum_probs=71.8
Q ss_pred CCCCceEEEeCCCC-cCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 276 FEPGFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 276 ~~~~~~lfV~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
..+.++|||+|||+ .+++++|+++|+.||.|..|+|. +|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999999 99999999999999999999984 7899999999999999999999999999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
|++++.++
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876654
No 199
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=131.46 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCC---eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGK---VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~---V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
...++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. ||+..|+||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34569999999999999999999999988 99999999987 9999999999999999999999 9999999999999
Q ss_pred EEccccc
Q 017842 354 NVAEDRQ 360 (365)
Q Consensus 354 ~~a~~~~ 360 (365)
.++.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987643
No 200
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=124.17 Aligned_cols=84 Identities=25% Similarity=0.370 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeE-EEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVE-IAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
...++|||+|||+++++++|+.+|++||.|. .++ ++.++.+++++|||||+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~--------------------------i~~~~~~g~~~g~afV~f~ 60 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVK--------------------------IIRNRLTGIPAGYCFVEFA 60 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEE--------------------------EEECSSSCCEEEEEEEECS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE--------------------------EeecCCCCCcCCEEEEEeC
Confidence 3578999999999999999999999999998 877 7788889999999999999
Q ss_pred CHHHHHHHHHHHccCcccCee----EEEeecCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRL----LTVNKAAPRG 266 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~----l~V~~a~~~~ 266 (365)
+.++|.+|+..|||..+.|+. |+|.++.+..
T Consensus 61 ~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 61 DLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp CHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred CHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 999999999999999999999 9999987654
No 201
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.7e-16 Score=124.14 Aligned_cols=78 Identities=22% Similarity=0.444 Sum_probs=72.2
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|+.||.|..|+|+ +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 445699999999999999999999999999999987 569999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.++..+
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876643
No 202
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.9e-16 Score=120.91 Aligned_cols=80 Identities=33% Similarity=0.580 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|++||.|..+. ++.+..+++++|||||+|.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~ 61 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT--------------------------IKMDPNTGRSRGFGFILFK 61 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEE--------------------------EEECTTTCCEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EeecCCCCccccEEEEEEC
Confidence 34678999999999999999999999999999887 7778889999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeec
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a 262 (365)
+.++|.+|+.. ++..|+|+.|+|.++
T Consensus 62 ~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 62 DAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp STHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 99999999976 888899999999875
No 203
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7e-17 Score=122.78 Aligned_cols=81 Identities=19% Similarity=0.403 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
.+.++|||+|||+++++++|+.+|++||.|..+. ++.+..++.++|||||+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~--------------------------i~~~~~~~~~~g~afV~f~~ 56 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTK--------------------------AILDKTTNKCKGYGFVDFDS 56 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEE--------------------------EECCSSSCSCCSEEEEEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCCcCcEEEEEECC
Confidence 4578999999999999999999999999999887 77788899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
.++|.+|+..|||..|.|+.|+|.++.
T Consensus 57 ~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 57 PSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 999999999999999999999988654
No 204
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=1e-16 Score=158.14 Aligned_cols=84 Identities=25% Similarity=0.439 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
+.++|||+|||+++|+++|..+|..||.|..|. |+.+..++.++|||||+|.+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~--------------------------i~~d~~tg~~kG~aFV~F~~~ 154 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIH--------------------------MVYSKRSGKPRGYAFIEYEHE 154 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEE--------------------------eeccCCCCCccceEEEeeccH
Confidence 467999999999999999999999999999887 777888999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
++|.+||..|||..|.|+.|.|.++.+...
T Consensus 155 e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 155 RDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 999999999999999999999999986543
No 205
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.4e-16 Score=140.83 Aligned_cols=84 Identities=26% Similarity=0.440 Sum_probs=78.6
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..|++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 017842 357 EDRQ 360 (365)
Q Consensus 357 ~~~~ 360 (365)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7543
No 206
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=130.98 Aligned_cols=85 Identities=21% Similarity=0.381 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEE--EEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI--AEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
...++|||||||+++++++|+.+|..||.|.. ++ +++++.+++++|||||+|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~--------------------------i~~d~~tg~~rG~aFV~f 74 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVR--------------------------VIKDKQTQLNRGFAFIQL 74 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEE--------------------------CCBCSSSSSBCSCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEE--------------------------EEEcCCCCCcceEEEEEE
Confidence 35679999999999999999999999999966 66 888888999999999999
Q ss_pred CCHHHHHHHHHHHccC----cccCeeEEEeecCCCCCC
Q 017842 235 STVEEAEKAVEMFHRY----DIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~----~~~gr~l~V~~a~~~~~~ 268 (365)
.+. +|.+|+..|||. .|+|+.|+|.++.+....
T Consensus 75 ~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 75 STI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp CHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred CCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 999 999999999999 999999999999876543
No 207
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=125.60 Aligned_cols=87 Identities=32% Similarity=0.543 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|..||.|..+. ++.++.+++++|||||+|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~--------------------------i~~~~~~g~~~g~afV~f~ 66 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCV--------------------------IMKDKTTNQSRGFGFVKFK 66 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEECSSSCCEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EeeCCCCCCcceEEEEEEC
Confidence 34678999999999999999999999999999887 7788889999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+.. ++..|+|+.|+|.++.++....
T Consensus 67 ~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 67 DPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp STTHHHHHHHH-CSEEETTEEEBCCCSCCSSCCT
T ss_pred CHHHHHHHHHh-CCCeECCEEEEEEEccCCCCCC
Confidence 99999999999 9999999999999998776543
No 208
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=123.68 Aligned_cols=85 Identities=20% Similarity=0.421 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCC-CCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRET-DRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~afV~f~ 235 (365)
...++|||+|||+++++++|+.+|..|| |..+. ++.+..+ ++++|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~--------------------------i~~~~~~~g~~~g~afV~f~ 65 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR--------------------------LPREPSNPERLKGFGYAEFE 65 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEE--------------------------CCBCSSCTTSBCSCEEEEES
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEE--------------------------EecCCCCCCCcCeEEEEEEC
Confidence 4568999999999999999999999999 98877 6777777 899999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+ .|||..|.|+.|+|.++.++....
T Consensus 66 ~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 66 DLDSLLSAL-SLNEESLGNKRIRVDVADQAQDKD 98 (104)
T ss_dssp SHHHHHHHH-GGGTCEETTEECEEEECCCCCCCC
T ss_pred CHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCCC
Confidence 999999999 889999999999999998776543
No 209
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.9e-16 Score=121.66 Aligned_cols=86 Identities=31% Similarity=0.563 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+++|..||.|..++ ++.+.. .++|||||+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~--------------------------i~~~~~--~~~g~afV~f~ 63 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE--------------------------IIFNER--GSKGFGFVTFE 63 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEE--------------------------EECCTT--TTCCEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCC--CCcEEEEEEEC
Confidence 34578999999999999999999999999999887 454433 38999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+..|||..|+|+.|+|.++.++....
T Consensus 64 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 64 NSADADRAREKLHGTVVEGRKIEVNNATARVMTN 97 (103)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEECCSSCCCC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCC
Confidence 9999999999999999999999999998876544
No 210
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=135.22 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccC--CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAG--TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..++|||||||+++++++|+.+|+.|| .|..++ ++.++.+|+++|||||+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~--------------------------i~~d~~tg~skGfaFV~f~ 107 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELK--------------------------FAENRANGQSKGYAEVVVA 107 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEE--------------------------EEECTTTCCEEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEE--------------------------EEecCCCCccceEEEEEEC
Confidence 367999999999999999999999999 887776 8888899999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+.++|.+|+..|||..|+|+.|+|.++.+.
T Consensus 108 ~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 108 SENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp CHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred CHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 999999999999999999999999988653
No 211
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=125.04 Aligned_cols=83 Identities=33% Similarity=0.607 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|+.||.|..+. +..+..++.++|||||+|.+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~--------------------------i~~~~~~g~~~g~afV~f~~~ 60 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR--------------------------LVYDRETGKPKGYGFCEYQDQ 60 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEE--------------------------EEEETTTTEEEEEEEEECSCH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEE--------------------------EEeCCCCCccceEEEEEECCH
Confidence 357999999999999999999999999998887 777878999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
++|.+|+..|||..|.|+.|+|.++.+..
T Consensus 61 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 61 ETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp HHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred HHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 99999999999999999999999988664
No 212
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-16 Score=123.97 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+.+.++|||+|||+++++++|+.+|++||.|..++ ++. .+|||||+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~--------------------------i~~------~kGfaFVeF~ 60 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLL--------------------------MLK------GKNQAFIEMN 60 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEE--------------------------EET------TTTEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEc------CCCEEEEEEC
Confidence 45678999999999999999999999999999987 332 3899999999
Q ss_pred CHHHHHHHHHHHc--cCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFH--RYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~ln--g~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+..|+ +..|.|+.|+|.++.++....
T Consensus 61 ~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 61 TEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp SHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred CHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 9999999999876 478999999999998776544
No 213
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.8e-16 Score=121.67 Aligned_cols=85 Identities=25% Similarity=0.359 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|+.||.|..+. ++.+. +.++|||||+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~--~~~~g~afV~f~ 63 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCK--------------------------MITEH--TSNDPYCFVEFY 63 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE--------------------------EECCC--CSSCCEEEEEES
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEE--------------------------EEecC--CCCCCEEEEEEC
Confidence 34578999999999999999999999999999887 55553 336899999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 64 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 64 EHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred CHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 999999999999999999999999999876544
No 214
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=3.9e-16 Score=132.69 Aligned_cols=83 Identities=27% Similarity=0.493 Sum_probs=79.0
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|+..|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46999999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred ccc
Q 017842 359 RQR 361 (365)
Q Consensus 359 ~~~ 361 (365)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 215
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=4.7e-16 Score=119.88 Aligned_cols=83 Identities=29% Similarity=0.473 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|.+||.|..+. +.. .+++++|||||+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~--------------------------i~~--~~g~~~g~afV~f~~ 57 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYAD--------------------------IKM--ENGKSKGCGVVKFES 57 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEE--SSSCEEEEEEEEESS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEc--cCCCcceEEEEEECC
Confidence 3578999999999999999999999999999887 443 378899999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.++|.+|+..|||..|+|+.|+|.++.+...
T Consensus 58 ~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 58 PEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp HHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 9999999999999999999999999887654
No 216
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=1.9e-17 Score=138.09 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=75.1
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
...++|||+|||+.+|+++|+++|+.|| |..|+|++++. ++++|||||+|.+.++|.+|| .+|+..|.||.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3456999999999999999999999999 77999999976 999999999999999999999 58999999999999999
Q ss_pred ccccc
Q 017842 357 EDRQR 361 (365)
Q Consensus 357 ~~~~~ 361 (365)
..+..
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87654
No 217
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=9.2e-16 Score=127.64 Aligned_cols=89 Identities=33% Similarity=0.548 Sum_probs=81.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|+.||.|..+. ++.+..+++++|||||+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~ 92 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVK--------------------------IVCDRETRQSRGYGFVKFQ 92 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEE--------------------------EEEETTTTEEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEEcCCCCCcceEEEEEEC
Confidence 44578999999999999999999999999999887 7778888999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE 270 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~ 270 (365)
+.++|.+|+..|||..|.|+.|+|.++.++..+..
T Consensus 93 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 127 (139)
T 1u6f_A 93 SGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPG 127 (139)
T ss_dssp SHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCCC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCCC
Confidence 99999999999999999999999999988765543
No 218
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=3.3e-16 Score=133.58 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=79.7
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++|||+|||+.+++++|+++|+.||.|..|++.+++.+|+++|||||+|.+.++|.+|+..|+|..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35699999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cccc
Q 017842 358 DRQR 361 (365)
Q Consensus 358 ~~~~ 361 (365)
++..
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 219
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=121.96 Aligned_cols=81 Identities=30% Similarity=0.490 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+++|+.||.|..+. +..+.. ++++|||||+|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~--------------------------i~~~~~-g~~~g~afV~f~~ 66 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVT--------------------------ICKDRE-GKPKSFGFVCFKH 66 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTT-SCEEEEEEEEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEECCC-CCCceEEEEEECC
Confidence 3568999999999999999999999999999887 666654 8899999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
.++|.+|+..|||..|.|+.|+|.++..
T Consensus 67 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 67 PESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp THHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 9999999999999999999999998753
No 220
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=2.6e-16 Score=125.71 Aligned_cols=86 Identities=31% Similarity=0.502 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|+.||.|..++ ++.+..+++++|||||+|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~--------------------------i~~~~~tg~~kg~afV~f~ 75 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECL--------------------------VMRDPLTKRSRGFGFVTFM 75 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------ECCCTTTCCCTTCEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEE--------------------------EEECCCCCCcCcEEEEEEC
Confidence 34578999999999999999999999999999887 7778888999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..+ |..|+|+.|+|.++.++..+
T Consensus 76 ~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 76 DQAGVDKVLAQS-RHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp SHHHHHHHHHSS-CEEETTEEEEEEECCCCCCC
T ss_pred CHHHHHHHHHHC-CCcCCCEEEEEEEccCCCCC
Confidence 999999999985 69999999999999876543
No 221
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=122.99 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=70.6
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCC-eEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccCCeeEEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGK-VVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG-QNLDGRAIRVN 354 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~-V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~-~~l~gr~l~V~ 354 (365)
.+.++|||+|||+.+++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|+..||| ..+.|++|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34569999999999999999999999999 6666552 489999999999999999999999 99999999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
|+.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99987654
No 222
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=125.45 Aligned_cols=85 Identities=41% Similarity=0.558 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|..||.|..++ ++.+..+++++|||||+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~ 67 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAV--------------------------VITDRQTGKSRGYGFVTMA 67 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEE--------------------------ESCCSSSCCCCSEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEE--------------------------EEEcCCCCccceEEEEEEC
Confidence 34678999999999999999999999999998887 7778888999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+.++|.+|+..+++ .|.|+.|+|.++.+...
T Consensus 68 ~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 68 DRAAAERACKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp SHHHHHHHHTCSSC-EETTEECEEEESTTTCC
T ss_pred CHHHHHHHHHhCCC-cCCCEEEEEEEcccCCC
Confidence 99999999999998 89999999999976543
No 223
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=2.9e-16 Score=134.76 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|..||.|..+. ++.+..++.++|||||+|.+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~~ 123 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH--------------------------LNLDRRTGFSKGYALVEYET 123 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTTSSEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE--------------------------EEecCCCCcEeeEEEEEECC
Confidence 4567899999999999999999999999999887 77788899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
.++|.+||..|||..|.|+.|.|.++.++...
T Consensus 124 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 124 HKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999999999999999999876554
No 224
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.4e-16 Score=118.18 Aligned_cols=75 Identities=36% Similarity=0.663 Sum_probs=70.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
+|||+|||+++++++|+.+|++||.|..+. +..+..+++++|||||+|.+.++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~~~~a 54 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAM--------------------------LMFDKTTNRHRGFGFVTFESEDIV 54 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEEC--------------------------CCBCSSSTTSCBEEEEECSCHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEecCCCCCcCcEEEEEECCHHHH
Confidence 599999999999999999999999998877 677777899999999999999999
Q ss_pred HHHHHHHccCcccCeeEEEeec
Q 017842 241 EKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 241 ~~Al~~lng~~~~gr~l~V~~a 262 (365)
.+|+. ++|..++|+.|+|.++
T Consensus 55 ~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 55 EKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHH-CCCCEECCEEEEEEeC
Confidence 99998 7999999999999875
No 225
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=6.8e-16 Score=120.84 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
.++.++|||+|||+++++++|+.+|++||.|..+. ++ +.+|||||+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~--------------------------i~------~~kg~AFVef~ 65 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVV--------------------------VM------PKKRQALVEFE 65 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EE------TTTTEEEEEES
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEE--------------------------EE------cCCCEEEEEEC
Confidence 34688999999999999999999999999999887 33 35899999999
Q ss_pred CHHHHHHHHHHHccCc--ccCeeEEEeecCCCC
Q 017842 236 TVEEAEKAVEMFHRYD--IDGRLLTVNKAAPRG 266 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~--~~gr~l~V~~a~~~~ 266 (365)
+.++|.+|+..|+|.. +.|+.|+|.++.++.
T Consensus 66 ~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 66 DVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp SHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 9999999999999976 789999999987653
No 226
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=126.29 Aligned_cols=76 Identities=17% Similarity=0.094 Sum_probs=70.9
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.||.|..|+|++ ++|||||+|.+.++|.+|+..|||..|.|++|+|.||..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 45999999999999999999999999999999874 488999999999999999999999999999999999976
Q ss_pred cc
Q 017842 359 RQ 360 (365)
Q Consensus 359 ~~ 360 (365)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 227
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=4.5e-16 Score=127.29 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|..||.|..+. ++.+..++.++|||||+|.+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~ 73 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH--------------------------LNLDRRTGYLKGYTLVEYET 73 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------CCBCTTTSSBCSCEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCccceEEEEEECC
Confidence 3467999999999999999999999999998887 77777899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
.++|.+|+..|||..|+|+.|+|.++.++...
T Consensus 74 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 74 YKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 99999999999999999999999999776543
No 228
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-15 Score=122.03 Aligned_cols=85 Identities=31% Similarity=0.413 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+++|..||.|..+. ++.+. +++++|||||+|.+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~--------------------------i~~~~-~g~~~g~afV~f~~ 65 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRAD--------------------------ILEDK-DGKSRGIGTVTFEQ 65 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------EEECT-TCSEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEECC-CCCeeeEEEEEECC
Confidence 3578999999999999999999999999998887 66665 58899999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
.++|.+|+..|||..|+|+.|+|.++......
T Consensus 66 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 66 SIEAVQAISMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECSCCCCC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEcccCCCC
Confidence 99999999999999999999999998765443
No 229
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=5.9e-16 Score=122.86 Aligned_cols=80 Identities=30% Similarity=0.476 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|..||.|..+. ++.+. ++.++|||||+|.+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~-~g~~~g~afV~f~~ 79 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAA--------------------------VHYDR-SGRSLGTADVHFER 79 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEECT-TSCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEECC-CCCcceEEEEEECC
Confidence 4578999999999999999999999999998887 66676 88999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
.++|.+|+..|||..|.|+.|+|.++.
T Consensus 80 ~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 80 KADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 999999999999999999999999875
No 230
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.5e-16 Score=123.02 Aligned_cols=86 Identities=23% Similarity=0.313 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCC-eEEEEEeeeeccCCCcccceeeeeeeeeeeeEE-ecCCCCCccceEEEEe
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGT-VEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVI-YNRETDRSRGFGFVTM 234 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~afV~f 234 (365)
.+.++|||+|||+++++++|+.+|..||. |..+. ++ .+..+++++|||||+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~--------------------------i~~~~~~~g~~~g~afV~f 59 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVI--------------------------VYASAADKMKNRGFAFVEY 59 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEE--------------------------CCSSSCTTTTTCCEEEEEE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEE--------------------------EEccCCCCCCcCcEEEEEe
Confidence 45789999999999999999999999998 98887 55 6777889999999999
Q ss_pred CCHHHHHHHHHHHc--cCcccCeeEEEeecCCCCCC
Q 017842 235 STVEEAEKAVEMFH--RYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 235 ~~~e~a~~Al~~ln--g~~~~gr~l~V~~a~~~~~~ 268 (365)
.+.++|.+|+..|+ +..+.|+.|+|.++.++...
T Consensus 60 ~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 60 ESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp SSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred cCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 99999999999996 59999999999999877653
No 231
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=120.99 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 158 EDAKLFVGNLPYDVDSEKLA----MLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
..++|||+|||+++++++|+ .+|++||.|..++ ++.+..+ +|||||+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~--------------------------i~~~~~~---rg~afV~ 58 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVE--------------------------LSPHTDY---QLKAVVQ 58 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEE--------------------------ECSCCST---TCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEE--------------------------EEeCCCC---CeEEEEE
Confidence 46799999999999999999 9999999999887 5555544 8899999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
|.+.++|.+|+..|||..|+|+.|+|.++.+..
T Consensus 59 f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 59 MENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999999999999997654
No 232
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.7e-16 Score=128.40 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=72.5
Q ss_pred ceEEEeCC----CCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecC----HHH----HHHHHH--HhCCCc
Q 017842 280 FRIYVGNL----PWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS----ETE----LNDAIA--ALDGQN 345 (365)
Q Consensus 280 ~~lfV~nL----p~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s----~~~----a~~Al~--~l~~~~ 345 (365)
+.|||+|| |+.+++..|+.+|+.||.|..|.++.|+.||+++|||||+|.+ ... |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 9999999999999999999999999999999999999999995 322 888888 789999
Q ss_pred cCCeeEEEEEcccc
Q 017842 346 LDGRAIRVNVAEDR 359 (365)
Q Consensus 346 l~gr~l~V~~a~~~ 359 (365)
|.||+|+|.+-++.
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987653
No 233
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=124.02 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|..||.|..+. ++.+..+++++|||||+|.+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~--------------------------~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV--------------------------CLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTC--------------------------EEEECSSSCEEEEEEEEESCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceE--------------------------EEEECCCCCeeeEEEEEECCH
Confidence 467999999999999999999999999987554 667778999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
++|.+|+..|||..|.|+.|+|.++..+.
T Consensus 68 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 68 DEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 99999999999999999999999987543
No 234
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=5.9e-16 Score=131.61 Aligned_cols=87 Identities=32% Similarity=0.402 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..++ +..+..+++++|||||+|.+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~--------------------------i~~~~~~g~~~g~afV~f~~ 121 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY--------------------------IPRDRYTKESRGFAFVRFHD 121 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE--------------------------CCCCSSCTTSCCEEEEEESB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EeecCCCCccceEEEEEECC
Confidence 3478999999999999999999999999998887 77787899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
.++|.+|+..|||..|.|+.|+|.++.+.....
T Consensus 122 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 122 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 999999999999999999999999998765543
No 235
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.4e-16 Score=123.63 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+++|.+||.|..+. ++.+..+++++|||||+|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~--------------------------~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV--------------------------CLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCC--------------------------EEEECTTSCEEEEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceE--------------------------EEEeCCCCCEeeEEEEEECCH
Confidence 468999999999999999999999999987655 667778899999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
++|.+|+..|||..|.|+.|+|.++.+
T Consensus 68 ~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 68 DEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred HHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 999999999999999999999998753
No 236
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=7.5e-17 Score=135.06 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=72.6
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEE-----EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARV-----VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 351 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i-----~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l 351 (365)
.+.++|||+|||+.+++++|+.+|+.||.|..|.+ ++...+++++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 44569999999999999999999999999877411 1112468899999999999999999999999999999999
Q ss_pred EEEEccccc
Q 017842 352 RVNVAEDRQ 360 (365)
Q Consensus 352 ~V~~a~~~~ 360 (365)
+|.||+++.
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999998654
No 237
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.3e-16 Score=127.60 Aligned_cols=82 Identities=28% Similarity=0.480 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+++|++||.|..++ ++.+..+++++|||||+|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~--------------------------i~~~~~~g~~~g~afV~f~ 90 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAK--------------------------VFIDKQTSLSKCFGFVSFD 90 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEE--------------------------ECCCSSSSCCCCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEeCCCCCCcCcEEEEEEC
Confidence 34578999999999999999999999999998887 7777788999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
+.++|.+|+..|||..|+|+.|+|.+++
T Consensus 91 ~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 91 NPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp SSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 9999999999999999999999998763
No 238
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=6e-16 Score=134.43 Aligned_cols=86 Identities=30% Similarity=0.519 Sum_probs=80.2
Q ss_pred cCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 275 VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 275 ~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+++. ++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred Ecccccc
Q 017842 355 VAEDRQR 361 (365)
Q Consensus 355 ~a~~~~~ 361 (365)
||.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9986543
No 239
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=124.83 Aligned_cols=83 Identities=22% Similarity=0.434 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecC-CCCCccceEEEEe
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNR-ETDRSRGFGFVTM 234 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~afV~f 234 (365)
....++|||+|||+++++++|+.+|+.|| |..++ ++.+. .+++++|||||+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~--------------------------i~~~~~~~g~~~g~afV~f 68 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR--------------------------LPREPSNPERLKGFGYAEF 68 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEE--------------------------CSCCTTTTCCCCSCEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE--------------------------EEecCCcCCccCeEEEEEE
Confidence 34578999999999999999999999999 98887 66666 5899999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
.+.++|.+|+ .|||..|+|+.|+|.++.++.
T Consensus 69 ~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 69 EDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred CCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 9999999999 789999999999999987653
No 240
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=6.8e-16 Score=125.88 Aligned_cols=83 Identities=16% Similarity=0.392 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||+|||+++++++|+.+|+.||.|..+. ++.+..++.++|||||+|.+.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~~~ 89 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRIT--------------------------ILCDKFSGHPKGYAYIEFAERN 89 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEE--------------------------EEEECTTSSCEEEEEEEESSHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEecCCCCCcccEEEEEECCHH
Confidence 57999999999999999999999999999887 7778889999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+|.+|+ .|||..|+|+.|+|.++.+....
T Consensus 90 ~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 90 SVDAAV-AMDETVFRGRTIKVLPKRTNMPG 118 (124)
T ss_dssp HHHHHH-TTTTCEETTEECEEEESSCCCSS
T ss_pred HHHHHH-hcCCCeECCeEEEEEECCCCCCC
Confidence 999999 78999999999999998865443
No 241
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-15 Score=119.40 Aligned_cols=84 Identities=29% Similarity=0.455 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|..||.|..+. ++.+..+++++|||||+|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~~ 66 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ--------------------------VKKDLKTGHSKGFGFVRFTE 66 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEE--------------------------EEECSSSCSEEEEEEEEESS
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCCccceEEEEECC
Confidence 3578999999999999999999999999999887 77888899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
.++|.+|+. ++..|+|+.|+|.++.++...
T Consensus 67 ~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 67 YETQVKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp HHHHHHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred HHHHHHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 999999998 578899999999999877554
No 242
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=130.72 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=73.0
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCe----EEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKV----VNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V----~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
..++|||+|||+.+|+++|+++|+.||.| ..|+|+++ .+|+++|||||+|.+.++|.+||. +|+..|.||.|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEEE
Confidence 34599999999999999999999999875 68999998 589999999999999999999999 4999999999999
Q ss_pred EEcccc
Q 017842 354 NVAEDR 359 (365)
Q Consensus 354 ~~a~~~ 359 (365)
..+..+
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988643
No 243
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=1.7e-16 Score=129.93 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=72.8
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeE--EEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVV--NARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~--~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..++|||+|||+.+|+++|+++|+.| .|. .|+|++++. |+++|||||+|.+.++|.+||. +++..|+||.|+|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 34699999999999999999999999 677 999999977 9999999999999999999999 688999999999999
Q ss_pred cccc
Q 017842 356 AEDR 359 (365)
Q Consensus 356 a~~~ 359 (365)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 244
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=125.48 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..+.++|||+|||+++++++|+.+|..||.|..+.+ ..+..+++++|||||+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~--------------------------~~~~~~g~~~g~afV~f~ 75 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPI--------------------------QFRMMTGRMRGQAFITFP 75 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCC--------------------------EEEEECSSSCSEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEE--------------------------EEEcCCCccceEEEEEEC
Confidence 446789999999999999999999999999854431 112227889999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+..|||..|.|+.|+|.++.++....
T Consensus 76 ~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 76 NKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp SHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 9999999999999999999999999998776543
No 245
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=125.99 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|..||.|..+. ++.+..++.++|||||+|.+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~~~ 79 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV--------------------------VMRDPASKRSRGFGFVTFSSM 79 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEE--------------------------EECCTTTSSCCSEEEEECSSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEECCCCCCcCceEEEEeCCH
Confidence 357999999999999999999999999998887 777888899999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
++|.+|+.. +|..|+|+.|+|.++.++....
T Consensus 80 ~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 80 AEVDAAMAA-RPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp HHHHHHHTS-CSEEETTEEEEEECCSSCCCCC
T ss_pred HHHHHHHHh-CCcEECCEEEEEEECCCCccCC
Confidence 999999998 9999999999999998876543
No 246
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.2e-16 Score=121.68 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEE-EEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI-AEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
...++|||+|||+++++++|+++|..||.|.. ++ ++++ .+++++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~--------------------------i~~~-~~g~~~G~afV~F~ 65 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT--------------------------LPVD-FQGRSTGEAFVQFA 65 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEE--------------------------CCBC-SSSCBCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEE--------------------------EEEC-CCCCcceEEEEEEC
Confidence 35789999999999999999999999999876 55 5566 78999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
+.++|.+|+.. ++..++||.|+|.++....
T Consensus 66 ~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 66 SQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp SHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred CHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 99999999998 9999999999999886554
No 247
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-15 Score=118.37 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=71.5
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|| .+++++|+++|+.||.|..|+|. +++|||||+|.+.++|.+|+..|||..+.|++|+|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45579999996 89999999999999999999984 45899999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987754
No 248
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=118.26 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=65.9
Q ss_pred Cce-EEEeCCCCcCcHHH----HHHHHhcc-CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 279 GFR-IYVGNLPWEVDNAR----LEQVFSEH-GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 279 ~~~-lfV~nLp~~~tee~----L~~~F~~~-G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
..+ |||+|||+.+++++ |+++|+.| |.|..| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 345 99999999999887 55899999 599999 23 9999999999999999999999999999999
Q ss_pred EEEcccccc
Q 017842 353 VNVAEDRQR 361 (365)
Q Consensus 353 V~~a~~~~~ 361 (365)
|+||+.+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999998764
No 249
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=124.40 Aligned_cols=85 Identities=31% Similarity=0.435 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..+. +..+. +++++|||||+|.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~--------------------------i~~~~-~g~~~g~afV~f~~ 85 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA--------------------------VDYDR-SGRSLGTADVHFER 85 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEE--------------------------EECCS-SSSCCSEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--------------------------EEECC-CCCEeeEEEEEECC
Confidence 3578999999999999999999999999998887 66676 88999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
.++|.+|+..|||..|+|+.|+|.++.+....
T Consensus 86 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 86 RADALKAMKQYKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp HHHHHHHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred HHHHHHHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence 99999999999999999999999998876543
No 250
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2e-16 Score=117.79 Aligned_cols=76 Identities=30% Similarity=0.500 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
++|||+|||+++++++|+.+|++||.|..+. +..++.+++++|||||+|.+.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~--------------------------i~~~~~~~~~~g~afV~f~~~~~ 54 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECL--------------------------VMRDPLTKRSRGFGFVTFMDQAG 54 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEE--------------------------EECCCCSSSCSSEEEECCCCTTH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EecCCCCCCcCceEEEEEcCHHH
Confidence 4899999999999999999999999998877 77777889999999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeec
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a 262 (365)
|.+|+..++ ..++|+.|+|.++
T Consensus 55 a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 55 VDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHhCC-CccCCEEEEEEec
Confidence 999999988 9999999999876
No 251
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=120.57 Aligned_cols=84 Identities=27% Similarity=0.414 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|.+||.|..+.| . ..+.++|||||+|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i--------------------------~---~~~~~~g~afV~f~ 69 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL--------------------------K---NRRGGPPFAFVEFE 69 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE--------------------------C---CSSSSSCCEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--------------------------E---ECCCCCcEEEEEEC
Confidence 446789999999999999999999999999988773 2 23457999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..||+..|+|+.|+|.++.+....
T Consensus 70 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 70 DPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 999999999999999999999999999876543
No 252
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=9.7e-17 Score=123.33 Aligned_cols=81 Identities=36% Similarity=0.659 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
++|||+|||+++++++|+++|+.||.|..+. +..+..+++++|||||+|.+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~~~- 54 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVK--------------------------LIYDRETKKPKGFGFVEMQEES- 54 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEE--------------------------ECCCSSSCCCCEEEEEEECTTH-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEEcCCCCCcceEEEEEECCHH-
Confidence 5899999999999999999999999999887 7778888999999999999999
Q ss_pred HHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 240 AEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 240 a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
|.+|+..|||..++|+.|+|.++.+...
T Consensus 55 a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 55 VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 9999999999999999999999887644
No 253
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=118.22 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEE
Q 017842 159 DAKLFVGNLPYDV------DSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232 (365)
Q Consensus 159 ~~tvfVgnLp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 232 (365)
+++|||+|||+++ ++++|+.+|++||.|..+. +. ..+|+++|||||
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~--------------------------i~--~~~g~~~g~afV 52 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF--------------------------YP--EEDGKTKGYIFL 52 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEE--------------------------CC--CBTTBCCCEEEE
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEE--------------------------ec--CCCCcEeEEEEE
Confidence 3689999999999 7799999999999998876 33 458899999999
Q ss_pred EeCCHHHHHHHHHHHccCcccCe-eEEEe
Q 017842 233 TMSTVEEAEKAVEMFHRYDIDGR-LLTVN 260 (365)
Q Consensus 233 ~f~~~e~a~~Al~~lng~~~~gr-~l~V~ 260 (365)
+|.+.++|.+|+..|||..|+|+ .|+|+
T Consensus 53 ~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 53 EYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp EESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred EECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 99999999999999999999999 88874
No 254
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-16 Score=124.80 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|..||.|.. . ++.+..+++++|||||+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~--------------------------~~~~~~~g~~~g~afV~f~ 66 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-L--------------------------AVVDVRTGTNRKFGYVDFE 66 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C--------------------------CCCEEEEETTTTEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E--------------------------EEecCCCCCcCcEEEEEEC
Confidence 335789999999999999999999999998865 2 5556667899999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+.++|.+|+. |||..|.|+.|+|.++.++..
T Consensus 67 ~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 67 SAEDLEKALE-LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp SHHHHHHHHH-GGGCCBTTBCCEEECCSCCCC
T ss_pred CHHHHHHHHh-cCCcEECCcEEEEEEcCCCCC
Confidence 9999999999 899999999999999987654
No 255
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.6e-16 Score=142.34 Aligned_cols=82 Identities=20% Similarity=0.389 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccC--CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAG--TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..++|||+|||+++++++|+++|..|| .|..|+ |++++.+++++|||||+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~--------------------------i~~d~~tg~skGfaFV~f~ 120 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK--------------------------FFENRANGQSKGFALVGVG 120 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEE--------------------------EEECTTTCCEEEEEEEEES
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEE--------------------------EEecCCCCccceEEEEEEC
Confidence 467899999999999999999999999 898877 8888899999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+.++|.+||..|||..|.|+.|+|.++.+.
T Consensus 121 ~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 121 SEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp CTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred CHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 999999999999999999999999988643
No 256
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.8e-16 Score=117.98 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+++|..| .|..++ ++++ .+++++|||||+|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~--------------------------i~~~-~~g~~~g~afV~f~~ 59 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIR--------------------------IVRN-AHGNKTGYIFVDFSN 59 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEE--------------------------EEEC-TTSCEEEEEEEECSS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEE--------------------------EEEC-CCCCCceEEEEEECC
Confidence 457899999999999999999999999 888877 6666 788999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
.++|.+|+. +||..|+|+.|+|.++.++.
T Consensus 60 ~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 60 EEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp HHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred HHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 999999999 89999999999999987653
No 257
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.64 E-value=1.5e-15 Score=129.05 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..|. ++.+..++.++|||||+|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~ 90 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKII--------------------------MGLDKMKKTACGFCFVEYYS 90 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECTTTCCEEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCccceEEEEEECC
Confidence 3578999999999999999999999999999887 77888899999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.++|.+|+..|||..|.|+.|+|.++.+...
T Consensus 91 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 91 RADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp HHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999999987654
No 258
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=121.49 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEE
Q 017842 158 EDAKLFVGNLPYDV------DSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGF 231 (365)
Q Consensus 158 ~~~tvfVgnLp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~af 231 (365)
..++|||||||+.+ ++++|+.+|++||.|..+. +. ..+|+++||||
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~--------------------------i~--~~~g~~~G~af 65 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF--------------------------YP--EEDGKTKGYIF 65 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEE--------------------------CC--CBTTBSCCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEE--------------------------ee--CCCCCeeeEEE
Confidence 46899999999999 7899999999999998876 43 36889999999
Q ss_pred EEeCCHHHHHHHHHHHccCcccCe-eEEEeecCCCC
Q 017842 232 VTMSTVEEAEKAVEMFHRYDIDGR-LLTVNKAAPRG 266 (365)
Q Consensus 232 V~f~~~e~a~~Al~~lng~~~~gr-~l~V~~a~~~~ 266 (365)
|+|.+.++|.+|+..|||..|.|+ .|+|.++....
T Consensus 66 V~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 66 LEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp EEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred EEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 999999999999999999999998 99999987543
No 259
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=122.15 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
..++.++|||+|||+++++++|+.+|++||.|..++ ++. .+|||||+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~--------------------------i~~------~kG~AFVeF 74 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLL--------------------------MLK------GKNQAFIEM 74 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEE--------------------------EEG------GGTEEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EeC------CCCEEEEEE
Confidence 344678999999999999999999999999999887 432 379999999
Q ss_pred CCHHHHHHHHHHHcc--CcccCeeEEEeecCCCCCCC
Q 017842 235 STVEEAEKAVEMFHR--YDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 235 ~~~e~a~~Al~~lng--~~~~gr~l~V~~a~~~~~~~ 269 (365)
.+.++|.+|+..|++ ..|.|+.|+|.++.++....
T Consensus 75 ~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 75 NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp SCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred CCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 999999999998874 68999999999998776554
No 260
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=124.81 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=71.1
Q ss_pred CCCceEEE--eCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc-----CCe
Q 017842 277 EPGFRIYV--GNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL-----DGR 349 (365)
Q Consensus 277 ~~~~~lfV--~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l-----~gr 349 (365)
.+..+||| +||++.+++++|+++|+.||.|..|.|+. ++|||||+|.+.++|.+|+..|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34568999 77999999999999999999999998863 379999999999999999999999988 799
Q ss_pred eEEEEEcccccc
Q 017842 350 AIRVNVAEDRQR 361 (365)
Q Consensus 350 ~l~V~~a~~~~~ 361 (365)
+|.|.|++..+-
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999987653
No 261
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=118.97 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=72.0
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEE-EEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNAR-VVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~-i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
..++|||+|||+.+++++|+++|+.||.|..|+ |++++.+ |.|||+|.+.++|.+|+..|||..+.||+|+|.||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346999999999999999999999999999995 8877553 44999999999999999999999999999999999
Q ss_pred cccc
Q 017842 357 EDRQ 360 (365)
Q Consensus 357 ~~~~ 360 (365)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9874
No 262
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=8.7e-16 Score=118.11 Aligned_cols=77 Identities=26% Similarity=0.503 Sum_probs=63.2
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc--CCeeEEEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL--DGRAIRVN 354 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l--~gr~l~V~ 354 (365)
.+.++|||+|||+.+|+++|+++|+.||.|..|+|+++ ++|||||+|.+.++|.+ |+|..+ .|++|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45569999999999999999999999999999999875 69999999999999883 566654 69999999
Q ss_pred EccccccC
Q 017842 355 VAEDRQRR 362 (365)
Q Consensus 355 ~a~~~~~~ 362 (365)
+|.++..+
T Consensus 80 ~a~~k~~~ 87 (89)
T 3d2w_A 80 NAEPKHNK 87 (89)
T ss_dssp ECC-----
T ss_pred EcCCCCcC
Confidence 99987653
No 263
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=7.6e-16 Score=123.40 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccC-CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAG-TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
.++..++|||+|||+++++++|+++|++|| .|..+.+ . ...++|||||+
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i--------------------------~----~~~~rGfaFV~ 73 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSV--------------------------N----TRDFDGTGALE 73 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEEC--------------------------S----SCSSSCCEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEE--------------------------E----cCCCCCEEEEE
Confidence 345578999999999999999999999999 8887662 2 23579999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
|.+.++|.+|+..|||..|+|+.|+|.++..+
T Consensus 74 F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 74 FPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp ESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 99999999999999999999999999998654
No 264
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=119.12 Aligned_cols=83 Identities=30% Similarity=0.598 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|.+||.| + ++.+ .+++++|||||+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~--------------------------~~~~-~~g~~~g~afV~f~ 61 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---K--------------------------VPQN-QNGKSKGYAFIEFA 61 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---E--------------------------CCBC-SSSCBCSEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---E--------------------------EEEC-CCCCEeeEEEEEEC
Confidence 3467899999999999999999999999987 2 3444 57889999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 62 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 62 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp SHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred CHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 999999999999999999999999999877543
No 265
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.9e-16 Score=124.40 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||+|||+++++++|+.+|..||.|..+. ++.+..+++++|||||+|.+.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~g~afV~f~~~~ 78 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR--------------------------IISDRNSRRSKGIAYVEFCEIQ 78 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------ECCSCCSSSCCCCEEEEESCGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEE--------------------------EEecCCCCccCcEEEEEeCcHH
Confidence 57999999999999999999999999999887 7778888999999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+|.+|+ .|||..|+|+.|+|.++.++
T Consensus 79 ~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 79 SVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp GHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred HHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 999999 88999999999999987654
No 266
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=118.33 Aligned_cols=77 Identities=26% Similarity=0.453 Sum_probs=69.7
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.||.|..| +.++.+++ ||||+|.+.++|.+|+. |||..|.|+.|+|.++.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4599999999999999999999999999987 55655554 99999999999999999 999999999999999986
Q ss_pred ccc
Q 017842 359 RQR 361 (365)
Q Consensus 359 ~~~ 361 (365)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 267
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=127.11 Aligned_cols=80 Identities=30% Similarity=0.493 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..++ ++.++.+++++|||||+|.+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~ 114 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ--------------------------IPLDYETEKHRGFAFVEFEL 114 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEE--------------------------CCCCTTTCCCCSEEEEEESC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EeecCCCCCcCcEEEEEECC
Confidence 3578999999999999999999999999999887 77777889999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeec
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a 262 (365)
.++|.+|+..|||..|+|+.|+|.++
T Consensus 115 ~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 115 AEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 99999999999999999999999874
No 268
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-15 Score=120.35 Aligned_cols=82 Identities=24% Similarity=0.459 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|..||.|..++ ++.+. ++.++|||||+|.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~--------------------------i~~~~-~g~~~g~afV~f~~ 75 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTR--------------------------ILRDS-SGTSRGVGFARMES 75 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEE--------------------------EEECS-SSCEEEEEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEECC-CCCcceEEEEEECC
Confidence 3568999999999999999999999999999887 66776 88999999999999
Q ss_pred HHHHHHHHHHHccCcc--------cCeeEEEeecCCC
Q 017842 237 VEEAEKAVEMFHRYDI--------DGRLLTVNKAAPR 265 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~--------~gr~l~V~~a~~~ 265 (365)
.++|.+|+..|||..| .+++|+|.++.++
T Consensus 76 ~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 76 TEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp HHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred HHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 9999999999999999 5788999888754
No 269
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=7.1e-16 Score=118.15 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=70.3
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
..++|||+|||+.+++++|+++|+.| .|..|+|. +++|||||+|.+.++|.+|+..|||..+.|++|+|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34589999999999999999999999 99999984 569999999999999999999999999999999999987
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 270
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=114.60 Aligned_cols=79 Identities=29% Similarity=0.582 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|+.||.|..+. +. +|||||+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------------------------~~--------~g~afV~f~ 50 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECD--------------------------II--------KNYGFVHIE 50 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEE--------------------------EE--------TTEEEEEES
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EE--------CCEEEEEEC
Confidence 34578999999999999999999999999998877 33 689999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|+|+.|+|.++.++...
T Consensus 51 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 51 DKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp SHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 999999999999999999999999999876554
No 271
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=2.2e-15 Score=123.60 Aligned_cols=76 Identities=26% Similarity=0.400 Sum_probs=70.1
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceE-EEEEecCHHHHHHHHHHhCCCccCC--eeEEEEEc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF-GFVTMSSETELNDAIAALDGQNLDG--RAIRVNVA 356 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~-afV~F~s~~~a~~Al~~l~~~~l~g--r~l~V~~a 356 (365)
.+|||+||++.+|+++|+++|+.||.|..|+|..+. +|| |||+|.+.++|.+|+..|||..|.| +.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 478999999999999999999999999999998652 688 9999999999999999999999988 99999999
Q ss_pred cccc
Q 017842 357 EDRQ 360 (365)
Q Consensus 357 ~~~~ 360 (365)
+.+.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8753
No 272
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-15 Score=117.76 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
.++.++|||+|||+++++++|+.+|++||.|..+. ++ +.+|||||+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~--------------------------i~------~~kg~aFVef~ 59 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVM--------------------------MM------PFKRQALVEFE 59 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEE--------------------------EE------TTTTEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--------------------------EE------CCCCEEEEEEC
Confidence 34678999999999999999999999999999876 33 24899999999
Q ss_pred CHHHHHHHHHHHccC--cccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRY--DIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~--~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|++. .|.|+.|+|.++.++...
T Consensus 60 ~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 60 NIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp SHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred CHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 999999999988764 599999999999876544
No 273
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=4.8e-16 Score=129.07 Aligned_cols=87 Identities=32% Similarity=0.402 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..+. ++.+..+++++|||||+|.+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~--------------------------i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY--------------------------IPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE--------------------------CCCCSSSSSCCSCCEEECSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEecCCCCccceEEEEEECC
Confidence 3478999999999999999999999999998887 67777889999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
.++|.+|+..|||..|.|+.|+|.++.+.....
T Consensus 99 ~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 99 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp HHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 999999999999999999999999998765543
No 274
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.2e-15 Score=115.65 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
....||||||++.+|+++|+.+|.+||+|..+++ . .++|||||+|.+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l--------------------------~------~~kGfaFVey~~~ 53 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP--------------------------Y------LNQGIALCKYTTR 53 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE--------------------------E------TTTTEEEEEESSH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE--------------------------c------CCCcEEEEEECCH
Confidence 3568999999999999999999999999999873 2 2699999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeec
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a 262 (365)
++|.+|++.|||..+.|+.|+|+.+
T Consensus 54 ~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 54 EEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEECC
T ss_pred HHHHHHHHHhcCCEECCcEEEEEEC
Confidence 9999999999999999999999876
No 275
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.8e-16 Score=123.27 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCC---CCccceE
Q 017842 157 PEDAKLFVGNLPYDVDSEKLA---MLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRET---DRSRGFG 230 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~---~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~a 230 (365)
...++|||+|||+++++++|+ ++|.+||.|..+. +..+..+ ++++|||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~~~~G~a 66 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVV--------------------------INNSTSYAGSQGPSASA 66 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEE--------------------------EECCSSCCSSSCCCEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEE--------------------------EecCCCcCccCCCCeEE
Confidence 357799999999999999999 9999999999887 5555543 3566999
Q ss_pred EEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 231 FVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 231 fV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
||+|.+.++|.+|+..|||..|+|+.|+|.++.++.
T Consensus 67 fV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 67 YVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp EEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred EEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 999999999999999999999999999999998765
No 276
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=120.01 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
.+.++|||+|||+ ++++++|+.+|++||.|..+. ++ +.+|||||+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~--------------------------i~------~~kg~aFVef~ 60 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHL--------------------------IL------NKINEAFIEMA 60 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEE--------------------------EC------SSSSCEEEEES
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEE--------------------------EE------cCCCEEEEEEC
Confidence 3678999999999 999999999999999999987 33 24689999999
Q ss_pred CHHHHHHHHHHHccC--cccCeeEEEeecCCCC
Q 017842 236 TVEEAEKAVEMFHRY--DIDGRLLTVNKAAPRG 266 (365)
Q Consensus 236 ~~e~a~~Al~~lng~--~~~gr~l~V~~a~~~~ 266 (365)
+.++|.+|+..||+. .|.|++|+|.++....
T Consensus 61 ~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 61 TTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp SHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 999999999999875 4999999999988543
No 277
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-16 Score=125.45 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCe-EEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTV-EIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
+...++|||+|||+++++++|+.+|..||.| ..++ ++++. +++++|||||+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~--------------------------i~~d~-~g~~~G~afV~F 64 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH--------------------------VLVDN-NGQGLGQALVQF 64 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE--------------------------ECCCT-TSSCSSCEEEEC
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE--------------------------EEECC-CCCcceEEEEEE
Confidence 3457899999999999999999999999998 6666 67777 899999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
.+.++|.+|+.. ||..|+|+.|+|.++.++.
T Consensus 65 ~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 65 KNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp SSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred CCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 999999999998 9999999999999886543
No 278
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=116.49 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|..||.|. +. ++. ++++|||||+|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~--------------------------~~~----~~~~g~afV~f~ 64 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LR--------------------------LTW----QGPRRRAFLHYP 64 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SE--------------------------EEE----ETTTTEEEEECS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EE--------------------------EEc----CCCCcEEEEEEC
Confidence 34578999999999999999999999999985 43 332 368999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
+.++|.+|+..|||..|+|+.|+|.++.++.
T Consensus 65 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 65 DSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 9999999999999999999999999988754
No 279
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=121.58 Aligned_cols=83 Identities=33% Similarity=0.611 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.....++|||+|||.++++++|+.+|++||.|..+. +..+. +.++|||||+|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------------------------i~~~~--~~~kg~afV~f 76 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE--------------------------IIFNE--RGSKGFGFVTF 76 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEE--------------------------ECCBT--TBCTTEEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEE--------------------------EEECC--CCCceEEEEEE
Confidence 344678999999999999999999999999998877 44443 45899999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
.+.++|.+|+..|||..|+|+.|+|.++.++
T Consensus 77 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 77 ENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999999998765
No 280
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-15 Score=117.27 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
.++.++|||+|||+++++++|+.+|++||.|..+. ++. .+|||||+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~--------------------------i~~------~kg~aFVef~ 59 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNIL--------------------------MLK------GKNQAFLELA 59 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEE--------------------------EET------TTTEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEC------CCCEEEEEEC
Confidence 34678999999999999999999999999998876 332 3899999999
Q ss_pred CHHHHHHHHHHHc--cCcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFH--RYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~ln--g~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+..|+ +..+.|+.|+|.++.++....
T Consensus 60 ~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 60 TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp SHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred CHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 9999999999875 677999999999998766543
No 281
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=123.57 Aligned_cols=81 Identities=23% Similarity=0.325 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEE
Q 017842 157 PEDAKLFVGNLPYDVDSEKLA----MLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 232 (365)
.+.++|||||||+.+++++|+ .+|++||.|..|. +. .+++++|||||
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~--------------------------i~---~~~~~rG~aFV 77 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIV--------------------------VD---LSDDNSGKAYI 77 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEE--------------------------EC---CCCSSCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEE--------------------------ec---cCCCcCCEEEE
Confidence 357899999999999999876 6999999997765 22 36788999999
Q ss_pred EeCCHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 233 ~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
+|.+.++|.+|+..|||..|.|+.|+|.++..+.
T Consensus 78 ~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 78 VFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp EESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred EECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 9999999999999999999999999999998654
No 282
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.9e-16 Score=121.48 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+++|..||.+ .++ ++++. +++++|||||+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~--------------------------i~~d~-~g~~~G~afV~F~ 63 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVH--------------------------IEIGP-DGRVTGEADVEFA 63 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEE--------------------------EEESS-SSCEEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEE--------------------------EEECC-CCCEeeEEEEEEC
Confidence 4457899999999999999999999999955 665 67776 8999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
+.++|.+|+. +|+..|.||.|+|..+.+..
T Consensus 64 ~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 64 THEDAVAAMA-KDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp SSHHHHHHHT-TSSCCSSSSCCEEEEECCCC
T ss_pred CHHHHHHHHH-hCCCeECCcEEEEEECCCCC
Confidence 9999999996 59999999999999877654
No 283
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-15 Score=118.66 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+...++|||+|||.++++++|+.+|..||.|..+.| .. .+|||||+|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i--------------------------~~------~~g~afV~f 68 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV--------------------------FP------EKGYSFVRF 68 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE--------------------------ET------TTTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--------------------------eC------CCCEEEEEE
Confidence 3446789999999999999999999999999988873 32 289999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
.+.++|.+|+..|+|..|.|+.|+|.++.++...
T Consensus 69 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 69 STHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 9999999999999999999999999999876543
No 284
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.9e-15 Score=128.60 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=70.7
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--eeEEEEEcc
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG--RAIRVNVAE 357 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g--r~l~V~~a~ 357 (365)
.+|||+||++.+++++|+++|+.||.|..|+|..+ .++|||||+|.+.++|.+|+..|||..|.| ++|+|.|++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 47999999999999999999999999999999754 258999999999999999999999999965 999999999
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 285
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=4.9e-16 Score=115.07 Aligned_cols=75 Identities=31% Similarity=0.448 Sum_probs=69.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
+|||+|||+++++++|+.+|++||.|..+. +..+..++.++|||||+|.+.++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~~~~~~~g~afV~f~~~~~a 54 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIE--------------------------LPMDNKTNKRRGFCFITFKEEEPV 54 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEEC--------------------------CCCSCCCSSSCCCEEEECSSSHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCCcCCEEEEEECCHHHH
Confidence 699999999999999999999999998876 677778899999999999999999
Q ss_pred HHHHHHHccCcccCeeEEEeec
Q 017842 241 EKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 241 ~~Al~~lng~~~~gr~l~V~~a 262 (365)
.+|+.. ++..++|+.|+|.++
T Consensus 55 ~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 55 KKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHh-CCCeECCEEEEEEEC
Confidence 999997 999999999999864
No 286
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2.5e-15 Score=131.48 Aligned_cols=83 Identities=31% Similarity=0.567 Sum_probs=76.9
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+||. +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 345699999999999999999999999999999999999999999999999999999999998 5999999999999999
Q ss_pred cccc
Q 017842 357 EDRQ 360 (365)
Q Consensus 357 ~~~~ 360 (365)
..+.
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7654
No 287
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=8.7e-16 Score=127.56 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCC---eEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGT---VEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
...++|||+|||+++|+++|+++|+.||. |..++ ++++.. ++++|||||+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~--------------------------i~~d~~-g~srG~aFV~ 94 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH--------------------------FIYTRE-GRQSGEAFVE 94 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEE--------------------------EEECSS-SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEE--------------------------EEECCC-CCCCeEEEEE
Confidence 35789999999999999999999999999 77776 777776 9999999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
|.+.++|.+|+. +||..|+||.|+|.++.+
T Consensus 95 F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 95 LGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp CSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred ECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 999999999999 899999999999998753
No 288
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=4.4e-15 Score=117.76 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=72.9
Q ss_pred CCCceEEEeCCCC-----cCcHHHHHHHHhccCCeEEEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCee
Q 017842 277 EPGFRIYVGNLPW-----EVDNARLEQVFSEHGKVVNARVVYDRET-GRSRGFGFVTMSSETELNDAIAALDGQNLDGRA 350 (365)
Q Consensus 277 ~~~~~lfV~nLp~-----~~tee~L~~~F~~~G~V~~v~i~~d~~~-~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~ 350 (365)
.+..+|+|+||.. ..++++|+++|++||.|..|+|++++.+ ++++|||||+|.+.++|.+|+..|||+.+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3456999999963 2378999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEEEccc
Q 017842 351 IRVNVAED 358 (365)
Q Consensus 351 l~V~~a~~ 358 (365)
|+|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999974
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.1e-15 Score=118.44 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||.++++++|+.+|+.||.|..+++ . +++|||||+|.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~--------------------------~------~~~g~afV~f~~ 72 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKH--------------------------Y------PEKGCCFIKYDT 72 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEE--------------------------E------TTTTEEEEECSS
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEE--------------------------e------cCCCEEEEEECC
Confidence 35689999999999999999999999999988773 2 568999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
.++|.+|+..|||..|+|+.|+|.++.++
T Consensus 73 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 73 HEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp HHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred HHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 99999999999999999999999998753
No 290
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=115.81 Aligned_cols=80 Identities=19% Similarity=0.391 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 155 EPPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 155 ~~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+.+.++|||+|||+++++++|+++|++||.|..+.+ . ..+|||||+|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~--------------------------~------~~~g~afV~f 60 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH--------------------------V------KGDSFAYIQY 60 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE--------------------------C------SSSCCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE--------------------------e------CCCCEEEEEE
Confidence 3456789999999999999999999999999988763 2 1278999999
Q ss_pred CCHHHHHHHHHHHccCccc--CeeEEEeecCCCC
Q 017842 235 STVEEAEKAVEMFHRYDID--GRLLTVNKAAPRG 266 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~--gr~l~V~~a~~~~ 266 (365)
.+.++|.+|+..|||..|. |+.|+|.++.++.
T Consensus 61 ~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 61 ESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 9999999999999999999 9999999998764
No 291
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=6.9e-15 Score=129.51 Aligned_cols=121 Identities=13% Similarity=0.204 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHH--ccCcccCeeEEEeecCCCCCCCCCCC--CcCCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEE
Q 017842 236 TVEEAEKAVEMF--HRYDIDGRLLTVNKAAPRGTQPERAP--RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARV 311 (365)
Q Consensus 236 ~~e~a~~Al~~l--ng~~~~gr~l~V~~a~~~~~~~~~~~--~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i 311 (365)
+.+.+..|+... ....+.+...+|.+.... +.+.... ......++|||+|||+.+++++|+++|+.||.|..|+|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~-p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSK-PLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTS-CCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccC-CCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 567777788775 455666666677655211 1111000 01123469999999999999999999999999999999
Q ss_pred EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcccc
Q 017842 312 VYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDR 359 (365)
Q Consensus 312 ~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~ 359 (365)
+++. +++++|||||+|.+.++|.+|+.. .+..++||+|+|.++++-
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~-~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVET-PGQKYKETDLLILFKDDY 187 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHC-TTCEETTEECEEEETTTC
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEhHHH
Confidence 9986 589999999999999999999984 566999999999998753
No 292
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.6e-15 Score=114.82 Aligned_cols=77 Identities=27% Similarity=0.382 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHcc--CCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKA--GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~--G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
...++|||+|||+++++++|+.+|..| |.|..+.+ .+|||||+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~----------------------------------~~g~afV~f 58 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK----------------------------------IRDYAFVHF 58 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE----------------------------------CSSEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE----------------------------------eCCeEEEEe
Confidence 357899999999999999999999999 88877652 368999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.+.++|.+|+..|||..|.|+.|+|.++.++..
T Consensus 59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 59 SNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp SSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999987654
No 293
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=118.20 Aligned_cols=84 Identities=33% Similarity=0.535 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+++|+.|+.| . ++.+..+++++|||||+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~---~--------------------------~~~~~~~~~~~g~afV~f~ 62 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRA---R--------------------------IVTDRETGSSKGFGFVDFN 62 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEE---E--------------------------EEECSSSCSEEEEEEEECS
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEE---E--------------------------EEecCCCCCcCcEEEEEEC
Confidence 4467899999999999999999999987533 3 6667778999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 63 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 63 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 999999999999999999999999999877654
No 294
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=9.4e-16 Score=124.28 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCC---eEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGT---VEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
...++|||+|||+++++++|+.+|+.||. |..++ ++++.. ++++|||||+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~--------------------------i~~~~~-g~~~G~afV~ 67 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVH--------------------------FIYTRE-GRQSGEAFVE 67 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEE--------------------------EEECSS-SCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEE--------------------------EEECCC-CCCCeEEEEE
Confidence 35789999999999999999999999998 77776 666766 8999999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
|.+.++|.+|+. +||..|+||.|+|.++..
T Consensus 68 F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 68 LESEDDVKLALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp BSSHHHHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred ECCHHHHHHHHh-cCCCeECCeEEEEEECCH
Confidence 999999999999 799999999999988754
No 295
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.8e-15 Score=117.54 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+++|.+||.|..+. ++.+ |||||+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~--------------------------i~~~-------g~afV~f~~ 59 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYAD--------------------------VYRD-------GTGVVEFVR 59 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEE--------------------------EETT-------TEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE--------------------------EecC-------CEEEEEECC
Confidence 3578999999999999999999999999998887 4433 899999999
Q ss_pred HHHHHHHHHHHccCcccC-----eeEEEeecCCCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDG-----RLLTVNKAAPRGTQP 269 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~g-----r~l~V~~a~~~~~~~ 269 (365)
.++|.+|+..|||..|.| +.|+|.++.++....
T Consensus 60 ~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 60 KEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp HHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCCC
T ss_pred HHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCCC
Confidence 999999999999999999 999999998876544
No 296
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.2e-15 Score=123.13 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=67.3
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCee-----EE
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRA-----IR 352 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~-----l~ 352 (365)
..++|||+|||+.+++++|+++|+.||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3469999999999999999999999999999999755 89999999999999999999999999998 88
Q ss_pred EEEcccccc
Q 017842 353 VNVAEDRQR 361 (365)
Q Consensus 353 V~~a~~~~~ 361 (365)
|..+.++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 888776554
No 297
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=116.28 Aligned_cols=80 Identities=33% Similarity=0.507 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..+.++|||+|||+++++++|+.+|..||.|..+.+ . +++|||||+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~--------------------------~------~~kg~afV~f~ 59 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI--------------------------H------KDKGFGFIRLE 59 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE--------------------------E------TTTTEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE--------------------------e------cCCCEEEEEEC
Confidence 346789999999999999999999999999988773 2 34899999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+.++|.+|+..|+|..|+|+.|+|.++.++..
T Consensus 60 ~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 60 TRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp SSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 99999999999999999999999999987653
No 298
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=113.47 Aligned_cols=79 Identities=25% Similarity=0.473 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|++||.|..+.+ . ++||||+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~--------------------------~--------~~~afV~f~ 51 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV--------------------------V--------KDYAFVHME 51 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEE--------------------------C--------SSCEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEE--------------------------E--------CCEEEEEEC
Confidence 446789999999999999999999999999988773 2 459999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|+|+.|+|.++.+....
T Consensus 52 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 52 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 999999999999999999999999999876543
No 299
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=7.1e-15 Score=119.84 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=67.7
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceE-EEEEecCHHHHHHHHHHhCCCccCC--eeEEEEEcc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGF-GFVTMSSETELNDAIAALDGQNLDG--RAIRVNVAE 357 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~-afV~F~s~~~a~~Al~~l~~~~l~g--r~l~V~~a~ 357 (365)
.|||+||++.+++++|+++|+.||.|..|+|... .|| |||+|.+.++|..|+..|||..|.| +.|+|.||+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 5789999999999999999999999999999642 386 9999999999999999999999987 699999998
Q ss_pred ccc
Q 017842 358 DRQ 360 (365)
Q Consensus 358 ~~~ 360 (365)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 300
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=120.05 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 156 PPEDAKLFVGNLPYD-VDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
..+.++|||+|||++ +++++|+.+|++||.|..+. ++ +++|||||+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~--------------------------i~------~~kg~aFVef 69 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYI--------------------------LM------RMKSQAFIEM 69 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEE--------------------------EE------TTTTEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEE--------------------------Ee------cCCCEEEEEE
Confidence 446889999999998 99999999999999999887 32 4589999999
Q ss_pred CCHHHHHHHHHHHcc--CcccCeeEEEeecCCCCC
Q 017842 235 STVEEAEKAVEMFHR--YDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 235 ~~~e~a~~Al~~lng--~~~~gr~l~V~~a~~~~~ 267 (365)
.+.++|.+|+..|++ ..|.||.|+|.++..+..
T Consensus 70 ~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 70 ETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp SSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred CCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 999999999998865 569999999999876543
No 301
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=1.7e-15 Score=117.87 Aligned_cols=82 Identities=17% Similarity=0.325 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEE
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLA----MLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGF 231 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~af 231 (365)
.++.++|||+|||+++++++|+ .+|++||.|..+.+ . .++.++||||
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i--------------------------~---~~~~~~g~af 55 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV--------------------------S---RSLKMRGQAF 55 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC--------------------------C---HHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEE--------------------------E---cCCCcCcEEE
Confidence 3467899999999999999999 99999999988762 2 2567889999
Q ss_pred EEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 232 VTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 232 V~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
|+|.+.++|.+|+..|||..+.|+.|+|.++.+..
T Consensus 56 V~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 56 VIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred EEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 99999999999999999999999999999988754
No 302
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-15 Score=112.49 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||.++++++|+++|.+||.|..+.+ . +++|||||+|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~--------------------------~------~~kg~afV~f~~ 57 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV--------------------------V------QRQQCAFIQFAT 57 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE--------------------------E------GGGTEEEEEESS
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE--------------------------E------CCCCEEEEEECC
Confidence 45789999999999999999999999999988873 3 258999999999
Q ss_pred HHHHHHHHHHH-ccCcccCeeEEEeecC
Q 017842 237 VEEAEKAVEMF-HRYDIDGRLLTVNKAA 263 (365)
Q Consensus 237 ~e~a~~Al~~l-ng~~~~gr~l~V~~a~ 263 (365)
.++|.+|+..| +|..++|+.|+|.+++
T Consensus 58 ~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 58 RQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 99999999988 9999999999999863
No 303
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=125.09 Aligned_cols=82 Identities=18% Similarity=0.320 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|..||.|..+. ++.+..+++++|||||+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~--------------------------~~~~~~~g~~~G~afV~F~ 75 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSI--------------------------YIAYGPNGKATGEGFVEFR 75 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTC--------------------------EEEECTTSSEEEEEEEEBS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceE--------------------------EEEECCCCCCCeEEEEEEC
Confidence 34568999999999999999999999999986533 5566679999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
+.++|.+||. +||..|+|+.|+|.++..
T Consensus 76 ~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 76 NEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred CHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 9999999999 899999999999998764
No 304
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=7.3e-15 Score=114.72 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=69.9
Q ss_pred cCCCCCCeEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEE
Q 017842 154 VEPPEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232 (365)
Q Consensus 154 ~~~~~~~tvfVgnLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 232 (365)
...+..++|||||||+ ++++++|+.+|+.||.|..++ + .+|||||
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~--------------------------i--------~~g~afV 62 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN--------------------------I--------KNAFGFI 62 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEE--------------------------E--------CSSEEEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEE--------------------------E--------eCCEEEE
Confidence 3455788999999998 999999999999999998876 2 2799999
Q ss_pred EeCCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 233 ~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+|.+.++|.+|+..|||..++|+.|+|.++..+
T Consensus 63 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 63 QFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp EESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 999999999999999999999999999998754
No 305
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=8.3e-16 Score=122.31 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCC---eEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGT---VEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
...++|||+|||+++++++|+.+|..||. |..++ ++++.. |+++|||||+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~--------------------------i~~~~~-g~~~G~afV~ 61 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIH--------------------------FLLNRD-GKRRGDALIE 61 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEE--------------------------CCCCTT-STTCSEEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEE--------------------------EEECCC-CCEeeEEEEE
Confidence 35789999999999999999999999998 77776 666766 9999999999
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
|.+.++|.+|+. ++|..++||.|+|.++.+.
T Consensus 62 F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 62 MESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp BSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred ECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 999999999999 7999999999999987643
No 306
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.5e-15 Score=125.96 Aligned_cols=80 Identities=25% Similarity=0.503 Sum_probs=74.8
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQ 360 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~ 360 (365)
+|||+|||+.+++++|+++|+.||.|..|++++++. ++++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.++.
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 899999999999999999999999999999999864 7799999999999999999999999999999999999998665
Q ss_pred c
Q 017842 361 R 361 (365)
Q Consensus 361 ~ 361 (365)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 307
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=3.5e-15 Score=132.65 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=71.7
Q ss_pred CCceEEEeCCC-CcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 278 PGFRIYVGNLP-WEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 278 ~~~~lfV~nLp-~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
++++|||+||| +.+++++|+.+|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..+.||+|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45699999999 899999999999999999999998652 799999999999999999999999999999999999
Q ss_pred ccc
Q 017842 357 EDR 359 (365)
Q Consensus 357 ~~~ 359 (365)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 743
No 308
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.59 E-value=3.7e-15 Score=132.41 Aligned_cols=82 Identities=24% Similarity=0.448 Sum_probs=75.3
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+++++|+++|+.||.|..|+|+++..+++++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 35999999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred cc
Q 017842 359 RQ 360 (365)
Q Consensus 359 ~~ 360 (365)
+.
T Consensus 108 ~~ 109 (216)
T 2qfj_A 108 IG 109 (216)
T ss_dssp CG
T ss_pred cc
Confidence 64
No 309
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=5.8e-15 Score=117.66 Aligned_cols=78 Identities=27% Similarity=0.451 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||+|||+++++++|+.+|++||.|..+. +. +|||||+|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~--------------------------i~--------kg~afV~f~ 73 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVK--------------------------IL--------NGFAFVEFE 73 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEE--------------------------EE--------TTEEEEECS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE--------------------------EE--------CCEEEEEEC
Confidence 44678999999999999999999999999998877 33 799999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+.++|.+|+..|||..|+|+.|+|.++.++..
T Consensus 74 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 74 EAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 99999999999999999999999999887643
No 310
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.8e-15 Score=114.53 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCC-eEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGT-VEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
...++|||+|||+++++++|+.+|++||. |..+. + .++|||||+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~--------------------------~-------~~~g~afV~f~ 52 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQV--------------------------L-------LKSGYAFVDYP 52 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCE--------------------------E-------EETTEEEECCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEE--------------------------E-------cCCCEEEEEEC
Confidence 45789999999999999999999999998 54433 1 25899999999
Q ss_pred CHHHHHHHHHHHcc-CcccCeeEEEeecCCCCCCC
Q 017842 236 TVEEAEKAVEMFHR-YDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 236 ~~e~a~~Al~~lng-~~~~gr~l~V~~a~~~~~~~ 269 (365)
+.++|.+|+..||| ..|+|+.|+|.++.++..+.
T Consensus 53 ~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 53 DQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLRS 87 (93)
T ss_dssp CHHHHHHHHHHHTTTCEETTEECEEEECCCCCCCC
T ss_pred CHHHHHHHHHHccCCeeECCEEEEEEEccCccccC
Confidence 99999999999999 99999999999998775543
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.2e-15 Score=117.70 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|++||.|..+.| . .++|||||+|.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i--------------------------~------~~~g~afV~f~~~ 56 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--------------------------P------EGGITAIVEFLEP 56 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--------------------------C------SSSSCEEEEESCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--------------------------e------CCCCEEEEEeCCH
Confidence 3579999999999999999999999999988763 2 3689999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
++|.+|+..|||..|.|++|+|.++....
T Consensus 57 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 57 LEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 99999999999999999999999986543
No 312
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=116.16 Aligned_cols=79 Identities=23% Similarity=0.478 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|..||.|..+ ..++.++|||||+|.+.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-------------------------------~~~~~~~g~afV~f~~~ 63 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-------------------------------SQDGKSKGIAYIEFKSE 63 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-------------------------------EETTEEEEEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-------------------------------CCCCCcceEEEEEECCH
Confidence 56899999999999999999999999977432 34788999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
++|.+|+..|+|..|.|+.|+|.++.++..
T Consensus 64 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 64 ADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp HHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 999999999999999999999999987654
No 313
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=1.3e-14 Score=114.46 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+++|..||.|..+.+ . ++||||+|.+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~--------------------------~--------~~~afV~f~~~ 55 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK--------------------------L--------KDYAFIHFDER 55 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE--------------------------C--------SSCEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--------------------------E--------CCEEEEEeCCH
Confidence 4689999999999999999999999999988762 2 56999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP 269 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~ 269 (365)
++|.+|+..|||..|.|+.|+|.++.++....
T Consensus 56 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 56 DGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred HHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 99999999999999999999999998776544
No 314
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.6e-16 Score=128.18 Aligned_cols=86 Identities=23% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEE--------EEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccc
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEI--------AEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRG 228 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 228 (365)
.+.++|||+|||+++++++|+.+|+.||.|.. ++ +..+..+++++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~--------------------------i~~~~~~g~~~g 58 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMIN--------------------------LYTDRETGKLKG 58 (116)
Confidence 35789999999999999999999999999987 44 677778899999
Q ss_pred eEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 229 FGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 229 ~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
||||+|.+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 59 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 59 EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 9999999999999999999999999999999999876543
No 315
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=4.5e-15 Score=113.01 Aligned_cols=71 Identities=27% Similarity=0.612 Sum_probs=66.1
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhcc----C-------CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEH----G-------KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~----G-------~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l 346 (365)
+.++|||+|||+.+++++|+++|+.| | .|..+++.++ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 34699999999999999999999999 8 8999999754 899999999999999999 8999999
Q ss_pred CCeeEEEEE
Q 017842 347 DGRAIRVNV 355 (365)
Q Consensus 347 ~gr~l~V~~ 355 (365)
.||+|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 316
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=111.17 Aligned_cols=79 Identities=24% Similarity=0.425 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+.+|+.||.|..+.+ . ++||||+|.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~--------------------------~--------~~~afV~f~ 52 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI--------------------------V--------KDYAFVHME 52 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEE--------------------------C--------SSEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--------------------------E--------CCEEEEEEC
Confidence 446789999999999999999999999999988773 2 459999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 53 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 53 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp CHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred CHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 999999999999999999999999999876543
No 317
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=1.3e-14 Score=124.23 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=76.2
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCC--CcceEEEEEecCHHHHHHHHHHhCCCccC---CeeEEE
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETG--RSRGFGFVTMSSETELNDAIAALDGQNLD---GRAIRV 353 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~--~~kG~afV~F~s~~~a~~Al~~l~~~~l~---gr~l~V 353 (365)
.++|||+|||+.+++++|+++|+.||.|..|+|++++.++ +++|||||+|.+.++|.+|+..|+|..+. ++.|.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 4699999999999999999999999999999999998887 89999999999999999999999998775 688999
Q ss_pred EEcccccc
Q 017842 354 NVAEDRQR 361 (365)
Q Consensus 354 ~~a~~~~~ 361 (365)
.++.....
T Consensus 83 ~~~~~~~~ 90 (175)
T 3nmr_A 83 KPADSEKN 90 (175)
T ss_dssp EECGGGCC
T ss_pred cccccccc
Confidence 88876553
No 318
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.8e-15 Score=117.87 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||+|||+++++++|+++|+.| .|..++ ++++.. |+++|||||+|.+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~--------------------------i~~d~~-g~~~G~afV~F~~~~ 67 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVH--------------------------LLKDHV-GRNNGNGLVKFLSPQ 67 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEE--------------------------ECCCTT-CCCCSEEEEECSSHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEE--------------------------EEECCC-CCCCeEEEEEECCHH
Confidence 4689999999999999999999999 787776 666665 899999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
+|.+|+ .+||..|+||.|.|..+..
T Consensus 68 ~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 68 DTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred HHHHHH-hcCCCeECCeEEEEEECCc
Confidence 999999 5699999999999987754
No 319
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.4e-15 Score=114.33 Aligned_cols=78 Identities=24% Similarity=0.457 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 156 PPEDAKLFVGNLPY-DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 156 ~~~~~tvfVgnLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.++.++|||+|||+ ++++++|+.+|++||.|..+. + .+|||||+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~--------------------------i--------~~g~afV~f 52 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN--------------------------I--------KNAFGFIQF 52 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEE--------------------------E--------ETTEEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEE--------------------------E--------eCCEEEEEE
Confidence 34678999999999 999999999999999998876 2 278999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.+.++|.+|+..|||..+.|+.|+|.++.+...
T Consensus 53 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 53 DNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp SCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 999999999999999999999999999876544
No 320
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.6e-15 Score=119.93 Aligned_cols=74 Identities=22% Similarity=0.374 Sum_probs=63.6
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCC---CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEE
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRET---GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVN 354 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~---~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~ 354 (365)
..++|||+|||+.+++++|+++|+.||.|. ++++.+..+ |+++|||||+|.+.++|.+||..|++ ++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEec
Confidence 346999999999999999999999999999 888888777 79999999999999999999998832 444444443
No 321
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=111.35 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|..||.|..+ +.+..+++ ||||+|.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v----------------------------~~~~~~g~---~afV~f~~~ 55 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV----------------------------VMDKDKGV---FAIVEMGDV 55 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE----------------------------EECSSSCC---EEEEEESSH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE----------------------------EEcCCCCc---EEEEEECCH
Confidence 46799999999999999999999999999764 33444554 999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
++|.+|+. |||..|+|+.|+|.++.++...
T Consensus 56 ~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 56 GAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp HHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred HHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 99999999 8999999999999988765543
No 322
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-15 Score=114.91 Aligned_cols=78 Identities=19% Similarity=0.360 Sum_probs=66.3
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+.++|||+|||+.+++++|+++|+.||.|..|+|+++ ++|||||+|.+.++|.+|+. .+..+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 3469999999999999999999999999999999865 58999999999999975432 1335599999999999
Q ss_pred ccccC
Q 017842 358 DRQRR 362 (365)
Q Consensus 358 ~~~~~ 362 (365)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 323
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=125.64 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..+.++|||+|||+++++++|+.+|+.||.|..+.++.. .-+....+++++|||||+|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~---------------------~di~~~~~g~~~g~afV~f~ 100 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIM---------------------FDIRLMKEGRMKGQAFIGLP 100 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHH---------------------CEEEEEEETTTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccce---------------------eeEEeccCCCcccEEEEEeC
Confidence 446789999999999999999999999999866310000 01112247889999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|.|+.|+|.++.+...+
T Consensus 101 ~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 101 NEKAAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp SHHHHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 999999999999999999999999999876543
No 324
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-15 Score=121.29 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCe----EEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEE
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTV----EIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 232 (365)
...++|||+|||+++|+++|+++|+.||.| ..|+ ++++ .+++++|||||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~--------------------------i~~d-~~gr~~G~aFV 73 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL--------------------------FVTY-PDGRPTGDAFV 73 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEE--------------------------EEEC-TTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEE--------------------------EEEC-CCCCEeeEEEE
Confidence 357899999999999999999999999975 4555 6666 48999999999
Q ss_pred EeCCHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 233 ~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
+|.+.++|.+|+.. |+..|+||.|.|..+.+
T Consensus 74 ~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 74 LFACEEYAQNALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp CCSSHHHHHHHHTT-TTEESSSCEECCEEECH
T ss_pred EECCHHHHHHHHHh-CCCeeCCeEEEEEECCH
Confidence 99999999999997 99999999999987643
No 325
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=9.8e-15 Score=118.81 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|| .+++++|+++|+.||.|..|+|. .++|||||+|.+.++|.+|+..|||..+.|++|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45679999996 69999999999999999999986 45899999999999999999999999999999999999
Q ss_pred cccccC
Q 017842 357 EDRQRR 362 (365)
Q Consensus 357 ~~~~~~ 362 (365)
.++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 987653
No 326
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=1.9e-14 Score=114.87 Aligned_cols=76 Identities=28% Similarity=0.405 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 158 EDAKLFVGNLPYD-VDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 158 ~~~tvfVgnLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
..++|||+|||++ +++++|+.+|.+||.|..+. + .+|||||+|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~--------------------------i--------~~g~afV~f~~ 71 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCS--------------------------V--------HKGYAFVQYSN 71 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEE--------------------------E--------ETTEEEEECSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEE--------------------------E--------eCCEEEEEECC
Confidence 4689999999999 99999999999999998876 3 58999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.++|.+|+..|+|..|+|+.|+|.++.++..
T Consensus 72 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 72 ERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp SHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999999975543
No 327
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=112.16 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|..||.|..++. ++.+.. .|.|||+|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~-------------------------i~~~~~----~~~afV~f~~~ 64 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQ-------------------------VNTDSE----TAVVNVTYSSK 64 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEE-------------------------ECCSSS----SEEEEEEESSH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEE-------------------------eecCCC----CCEEEEEECCH
Confidence 4689999999999999999999999999988731 333333 33499999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
++|.+|+..|||..|+|+.|+|.++.++.
T Consensus 65 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 65 DQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 99999999999999999999999998764
No 328
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.55 E-value=1.5e-14 Score=121.99 Aligned_cols=79 Identities=27% Similarity=0.354 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
....++|||||||+++++++|+.+|+.||.|..++ +..+ ++|||||+|.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~-----~~g~afV~f~ 118 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--------------------------VARN-----PPGFAFVEFE 118 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEE--------------------------ECSS-----SCSEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE--------------------------EeeC-----CCcEEEEEEC
Confidence 34578999999999999999999999999998887 3332 5899999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+.++|.+|+..|||..|.|+.|+|.++.++
T Consensus 119 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 119 DPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999999999998765
No 329
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=6e-15 Score=125.65 Aligned_cols=80 Identities=29% Similarity=0.655 Sum_probs=74.9
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAED 358 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~ 358 (365)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccc
Confidence 4699999999999999999999999999999999999999999999999999999999999 47899999999999876
Q ss_pred cc
Q 017842 359 RQ 360 (365)
Q Consensus 359 ~~ 360 (365)
+.
T Consensus 81 ~~ 82 (167)
T 2cjk_A 81 RD 82 (167)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 330
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.9e-15 Score=116.49 Aligned_cols=81 Identities=26% Similarity=0.508 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|+.||.|..+. +..+. +++++|||||+|.+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--------------------------i~~~~-~g~~~g~afV~f~~~ 60 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVK--------------------------IITDR-TGVSKGYGFVSFYND 60 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE--------------------------EEECT-TSCEEEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE--------------------------EEECC-CCCccceEEEEECCH
Confidence 357999999999999999999999999998887 67776 899999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
++|.+|+. +|..++|+.|.|.++.++..
T Consensus 61 ~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 61 VDVQKIVE--SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp CCHHHHTT--CCCEETTEECEEEEEEECC-
T ss_pred HHHHHHHh--CCCeECCEEEEEEECCcCcc
Confidence 99999999 99999999999998876543
No 331
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=7.3e-15 Score=120.24 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeE--EEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVE--IAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
...++|||+|||+++++++|+++|+.| .|. .|+ ++++.. |+++|||||+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~--------------------------i~~d~~-GrsrGfaFV~F 91 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGIT--------------------------LPVDPE-GKITGEAFVQF 91 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEE--------------------------CCCCSS-SSSCSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEE--------------------------EEECCC-CCCceEEEEEE
Confidence 457899999999999999999999999 455 555 677776 99999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
.+.++|.+|+.. ++..|+||.|+|..+..
T Consensus 92 ~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 92 ASQELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp SSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred CCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 999999999997 88999999999987754
No 332
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=125.72 Aligned_cols=83 Identities=31% Similarity=0.452 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+.+|+.||.|..+. +.++. ++.++|||||+|.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~--------------------------i~~d~-~g~~kG~afV~F~~ 138 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA--------------------------VDYDR-SGRSLGTADVHFER 138 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEE--------------------------ECCCT-TSSCSCCEEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEECC-CCCEeeEEEEEeCC
Confidence 3568999999999999999999999999998887 66666 88999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
.++|.+|+..|||..|+|+.|+|.++....
T Consensus 139 ~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 139 RADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 999999999999999999999999987643
No 333
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=3.6e-15 Score=124.21 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCC
Q 017842 157 PEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMST 236 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 236 (365)
...++|||+|||+++++++|+++|+.|| |..++ ++++.. ++++|||||+|.+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~--------------------------i~~d~~-g~srGfaFV~F~~ 95 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH--------------------------IEIGPD-GRVTGEADVEFAT 95 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE--------------------------CCCSSS-SCSSCCCEEECSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE--------------------------EEECCC-CCCceEEEEEeCC
Confidence 3567999999999999999999999999 55666 667765 8999999999999
Q ss_pred HHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 237 VEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 237 ~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.++|.+|| .+|+..|.||.|.|..+.+...
T Consensus 96 ~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 96 HEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred HHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 99999999 6699999999999998876543
No 334
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.54 E-value=1.7e-14 Score=130.50 Aligned_cols=105 Identities=23% Similarity=0.289 Sum_probs=78.7
Q ss_pred ccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcC---------cHHHHHHHHhccCCeEEEEEEeeCCCC
Q 017842 248 HRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEV---------DNARLEQVFSEHGKVVNARVVYDRETG 318 (365)
Q Consensus 248 ng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~---------tee~L~~~F~~~G~V~~v~i~~d~~~~ 318 (365)
+...+.|+.....+...... ........++|||+||+..+ ++++|+.+|+.||.|..|+|+.+
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g----~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---- 178 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGG----IGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---- 178 (240)
T ss_dssp SSBCTTSSBCGGGTC-------------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----
T ss_pred cCcccccchhcccchhcccC----cCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----
Confidence 44556677644433322111 11123456699999999998 89999999999999999999853
Q ss_pred CcceEEEEEecCHHHHHHHHHHhCCCcc------------CCeeEEEEEccccccC
Q 017842 319 RSRGFGFVTMSSETELNDAIAALDGQNL------------DGRAIRVNVAEDRQRR 362 (365)
Q Consensus 319 ~~kG~afV~F~s~~~a~~Al~~l~~~~l------------~gr~l~V~~a~~~~~~ 362 (365)
+|||||+|.+.++|..|+..|+|..| .|+.|.|.||...+.+
T Consensus 179 --kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 179 --KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp --GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred --CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 89999999999999999999999999 8999999999977653
No 335
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1e-14 Score=118.08 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=70.0
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 160 AKLFVGNL----PYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 160 ~tvfVgnL----p~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
..|||||| |+.+++..|+++|+.||.|..+. ++.|+.||+++|||||+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~--------------------------li~Dp~Tg~slGfgfVef~ 56 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFE--------------------------AFNDPNSALPLHVYLIKYA 56 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEE--------------------------EEECTTTCCEEEEEEEECC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EEecCCCCceeeEEEEEEC
Confidence 58999999 99999999999999999999988 8999999999999999999
Q ss_pred C----HHH----HHHHHH--HHccCcccCeeEEEeecC
Q 017842 236 T----VEE----AEKAVE--MFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 236 ~----~e~----a~~Al~--~lng~~~~gr~l~V~~a~ 263 (365)
+ ++. |.+|+. .+||..|+|+.|+|..-.
T Consensus 57 d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 57 SSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp ------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 5 322 788888 789999999999998654
No 336
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.2e-14 Score=108.23 Aligned_cols=79 Identities=25% Similarity=0.320 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|| ++++++|+.+|.+||.|..+. + ++++|||||+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~--------------------------i------~~~~g~afV~f~ 57 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLS--------------------------M------DPPRNCAFVTYE 57 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEE--------------------------E------ETTTTEEEEEES
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEE--------------------------e------cCCCCEEEEEEC
Confidence 345789999996 999999999999999998876 3 267899999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 58 ~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 58 KMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp SHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 999999999999999999999999999876543
No 337
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=2.5e-14 Score=109.48 Aligned_cols=75 Identities=28% Similarity=0.467 Sum_probs=68.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|++| .|..++ +. +++|||||+|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~--------------------------i~------~~~g~afV~f~~~ 50 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCY--------------------------VD------RNKRTAFVTLLNG 50 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEE--------------------------EE------GGGTEEEECCSCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEE--------------------------Ee------CCCcEEEEEECCH
Confidence 46899999999999999999999999 887766 31 6789999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
++|.+|+..|||..++|+.|+|.++...
T Consensus 51 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 51 EQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred HHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 9999999999999999999999998644
No 338
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=4.2e-14 Score=131.18 Aligned_cols=81 Identities=22% Similarity=0.463 Sum_probs=74.8
Q ss_pred CCCceEEEeCCCCcCcHHHHH----HHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEE
Q 017842 277 EPGFRIYVGNLPWEVDNARLE----QVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIR 352 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~----~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~ 352 (365)
.+.++|||+|||+.+++++|+ ++|+.||.|..|+|.+ +++++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 456699999999999999976 8999999999999985 578999999999999999999999999999999999
Q ss_pred EEEccccc
Q 017842 353 VNVAEDRQ 360 (365)
Q Consensus 353 V~~a~~~~ 360 (365)
|.|++.+.
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997655
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=2.6e-14 Score=108.75 Aligned_cols=71 Identities=24% Similarity=0.579 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHcc----C-------CeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCc
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKA----G-------TVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRS 226 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
..++|||+|||+++++++|+.+|++| | .|..+++ . ++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~--------------------------~------~~ 52 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--------------------------N------QD 52 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE--------------------------C------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe--------------------------c------CC
Confidence 46899999999999999999999999 8 7877662 2 34
Q ss_pred cceEEEEeCCHHHHHHHHHHHccCcccCeeEEEee
Q 017842 227 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 261 (365)
Q Consensus 227 ~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~ 261 (365)
+|||||+|.+.++|.+|+ .|||..++|+.|+|.+
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 899999999999999999 8999999999999975
No 340
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.9e-14 Score=111.41 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=70.2
Q ss_pred CCCceEEEeCCCCcCc-----------HHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 017842 277 EPGFRIYVGNLPWEVD-----------NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQN 345 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~t-----------ee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~ 345 (365)
.+..+|+|+||....+ +++|+++|+.||.|..|.| .++ .++|||||+|.+.++|.+|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4556999999944332 6899999999999999966 453 379999999999999999999999999
Q ss_pred cCCeeEEEEEcccccc
Q 017842 346 LDGRAIRVNVAEDRQR 361 (365)
Q Consensus 346 l~gr~l~V~~a~~~~~ 361 (365)
|.||+|+|.|+.++.+
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999988664
No 341
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=5.3e-14 Score=120.32 Aligned_cols=79 Identities=20% Similarity=0.442 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+++|++||.|..+. +..+..++.++|||||.|.+.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~--------------------------i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN--------------------------LVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEE--------------------------EEECTTTCSEEEEEEEEESST
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEE--------------------------EEecCCCCCcceEEEEEeCCH
Confidence 478999999999999999999999999998887 777778999999999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeec
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a 262 (365)
++|.+|+..|||..++|+.|+|.++
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999999986
No 342
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=2.9e-14 Score=113.02 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=71.2
Q ss_pred CCceEEEeCC--CCcC--------cHHHHHHHHhccCCeEEEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCCc
Q 017842 278 PGFRIYVGNL--PWEV--------DNARLEQVFSEHGKVVNARVVYDRET--GRSRGFGFVTMSSETELNDAIAALDGQN 345 (365)
Q Consensus 278 ~~~~lfV~nL--p~~~--------tee~L~~~F~~~G~V~~v~i~~d~~~--~~~kG~afV~F~s~~~a~~Al~~l~~~~ 345 (365)
|.+.|++.|+ |..+ .+++|++.|++||.|..|+|++++.+ +.++|||||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999998 3333 34799999999999999999988765 4689999999999999999999999999
Q ss_pred cCCeeEEEEEccc
Q 017842 346 LDGRAIRVNVAED 358 (365)
Q Consensus 346 l~gr~l~V~~a~~ 358 (365)
++||+|+|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999864
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-14 Score=107.22 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=63.9
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHHHHcc-CCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEE
Q 017842 159 DAK-LFVGNLPYDVDSEK----LAMLFEKA-GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232 (365)
Q Consensus 159 ~~t-vfVgnLp~~~t~~~----L~~~F~~~-G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 232 (365)
..| |||+|||+.+++++ |+.+|+.| |+|..| ++ |+|||
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---------------------------------tg---G~AfV 51 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---------------------------------TG---CSAIL 51 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---------------------------------CT---TCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---------------------------------ec---CEEEE
Confidence 445 99999999999887 55899999 598653 22 99999
Q ss_pred EeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 233 ~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+|.+.++|.+|++.|+|..+.||+|+|.++..+..
T Consensus 52 ~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 52 RFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp EESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred EECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 99999999999999999999999999999987654
No 344
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=6.9e-14 Score=122.42 Aligned_cols=86 Identities=20% Similarity=0.432 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|||+++++++|+++|+.||.|..++ +..+..++.++|||||+|.
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~--------------------------~~~~~~~~~~~g~afV~f~ 164 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN--------------------------LVKDSATGLSKGYAFCEYV 164 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEE--------------------------EEECTTTCSEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEE--------------------------EeecCCCCCcceEEEEEEC
Confidence 34678999999999999999999999999998887 7777789999999999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+.++|.+|+..|||..|+|+.|+|.++.++..
T Consensus 165 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 165 DINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999987653
No 345
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.4e-14 Score=112.70 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=67.3
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEe
Q 017842 157 PEDAKLFV--GNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTM 234 (365)
Q Consensus 157 ~~~~tvfV--gnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 234 (365)
.+.++||| |||++++++++|+++|++||.|..+.| . ..+|||||+|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--------------------------~------~~rgfaFV~f 70 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--------------------------P------PNKPYSFARY 70 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--------------------------C------TTCSCEEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--------------------------e------CCCCEEEEEE
Confidence 35788999 779999999999999999999988762 2 2479999999
Q ss_pred CCHHHHHHHHHHHccCcc-----cCeeEEEeecCCC
Q 017842 235 STVEEAEKAVEMFHRYDI-----DGRLLTVNKAAPR 265 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~-----~gr~l~V~~a~~~ 265 (365)
.+.++|.+|+..|||..+ .|++|+|.++...
T Consensus 71 ~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 71 RTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp SSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 999999999999999988 7899999887643
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=5.3e-14 Score=108.03 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=61.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+++..+|||||||+++++++|+++|++||.|..++ +++ .++|||||+|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~--------------------------i~~-----~srGfaFV~F~ 56 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVF--------------------------IPK-----PFRAFAFVTFA 56 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--------------------------CCS-----SCCSEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEE--------------------------Eee-----CCCCEEEEEEC
Confidence 45678999999999999999999999999999887 333 27999999999
Q ss_pred CHHHHHHHHHHHccCcc--cCeeEEEeecCCCC
Q 017842 236 TVEEAEKAVEMFHRYDI--DGRLLTVNKAAPRG 266 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~--~gr~l~V~~a~~~~ 266 (365)
+.++|.+ ++|..+ .|+.|.|.++.++.
T Consensus 57 ~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 57 DDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp CHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred CHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 9999883 466554 59999999988764
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=4.3e-14 Score=113.84 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+++|.+||.|..+. ++.+ |||||+|.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~--------------------------i~~~-------g~afV~f~~~ 61 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYAD--------------------------VYRD-------GTGVVEFVRK 61 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEE--------------------------ECTT-------SEEEEEESSH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------EecC-------CEEEEEECCH
Confidence 467999999999999999999999999998877 3322 9999999999
Q ss_pred HHHHHHHHHHccCcccCee-----EEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRL-----LTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~-----l~V~~a~~~~~ 267 (365)
++|.+||..|||..|+|+. |+|....++..
T Consensus 62 ~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 62 EDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 96 (115)
T ss_dssp HHHHHHHHHHTTCBCCCTTSCCCBCEEEECC----
T ss_pred HHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCCC
Confidence 9999999999999999998 77776665543
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.7e-14 Score=111.80 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCC---CCccceEEEEe
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRET---DRSRGFGFVTM 234 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~afV~f 234 (365)
..++|||+|||+++++++|+.+|++||.|. +. ++.+..+ |+++|||||+|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~--------------------------~~~~~~~~~~g~~~G~aFV~f 59 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD--------------------------WPHKAESKSYFPPKGYAFLLF 59 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE--------------------------CTTSSSSCCCSCTTSEEEECC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE--------------------------EeecCCCCCCCCcccEEEEEE
Confidence 468999999999999999999999999998 55 4555555 79999999999
Q ss_pred CCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 235 STVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 235 ~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
.+.++|.+|+..|++ ++|+.|.+..+.
T Consensus 60 ~~~~~a~~Ai~~~~~--~~G~~~~~~~~~ 86 (114)
T 2dnl_A 60 QEESSVQALIDACLE--EDGKLYLCVSSP 86 (114)
T ss_dssp SSHHHHHHHHHHSEE--ETTEEEEEECCS
T ss_pred CCHHHHHHHHHhhhh--cCCcEEEeccCC
Confidence 999999999998854 678877776543
No 349
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=6.4e-14 Score=126.36 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=73.2
Q ss_pred CCCceEEEeCCCC-cCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 277 EPGFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 277 ~~~~~lfV~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
.+.++|||+|||+ .+++++|+++|+.||.|..|+|.+++ +|||||+|.+.++|.+|+..|+|..+.|++|+|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4556999999999 99999999999999999999999874 79999999999999999999999999999999999
Q ss_pred cccc
Q 017842 356 AEDR 359 (365)
Q Consensus 356 a~~~ 359 (365)
+..+
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 350
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=1.5e-13 Score=111.22 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCceEEEeCCCC-----cCcHHHHHHHHhccCCeEEEEEEeeCC----CCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 017842 278 PGFRIYVGNLPW-----EVDNARLEQVFSEHGKVVNARVVYDRE----TGRSRGFGFVTMSSETELNDAIAALDGQNLDG 348 (365)
Q Consensus 278 ~~~~lfV~nLp~-----~~tee~L~~~F~~~G~V~~v~i~~d~~----~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g 348 (365)
+..+|+|+|+-. ...+++|++.|++||.|..|+|++++. +++++|||||+|.+.++|.+|+..|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 445999999932 224689999999999999999999865 35778999999999999999999999999999
Q ss_pred eeEEEEEccc
Q 017842 349 RAIRVNVAED 358 (365)
Q Consensus 349 r~l~V~~a~~ 358 (365)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999863
No 351
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=1.8e-13 Score=116.31 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
-.+|||+||++.+++++|+.+|++||.|..+.| .. .+.+|||||+|.+.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i--------------------------~~----k~~rgfAFVeF~d~~ 95 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT--------------------------FT----KNNQFQALLQYADPV 95 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEE--------------------------EE----SSSCEEEEEEESCHH
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEE--------------------------Ee----CCCCCEEEEEECCHH
Confidence 456999999999999999999999999998873 22 235789999999999
Q ss_pred HHHHHHHHHccCcccC--eeEEEeecCCCCC
Q 017842 239 EAEKAVEMFHRYDIDG--RLLTVNKAAPRGT 267 (365)
Q Consensus 239 ~a~~Al~~lng~~~~g--r~l~V~~a~~~~~ 267 (365)
+|.+|+..|||..|.| +.|+|.++.++..
T Consensus 96 ~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 96 SAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp HHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred HHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 9999999999999965 9999999987743
No 352
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=2.8e-14 Score=112.89 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=64.7
Q ss_pred EeCCCCcCcHHHHHHHH------------hccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeE
Q 017842 284 VGNLPWEVDNARLEQVF------------SEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAI 351 (365)
Q Consensus 284 V~nLp~~~tee~L~~~F------------~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l 351 (365)
+.|||+.+++++|+++| ++||.|..|+|+++.. ++++|||||+|.+.++|.+|+..|||+.++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 9999999999998854 7899999999999999999999999999999999
Q ss_pred EEEEc
Q 017842 352 RVNVA 356 (365)
Q Consensus 352 ~V~~a 356 (365)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 353
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=2.6e-13 Score=111.18 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=68.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccce-EEEEeCCH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGF-GFVTMSTV 237 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-afV~f~~~ 237 (365)
-..|||+||++.+|+++|+.+|++||.|..|.+ .. +.+|| |||+|.+.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i--------------------------~~-----~~~gfqAFVef~~~ 76 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT--------------------------FT-----KNNQFQALLQYADP 76 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEE--------------------------EE-----ETTEEEEEEEESCH
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEE--------------------------Ec-----CCCCcEEEEEECCH
Confidence 346889999999999999999999999998863 32 23677 99999999
Q ss_pred HHHHHHHHHHccCcccC--eeEEEeecCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDG--RLLTVNKAAPRGT 267 (365)
Q Consensus 238 e~a~~Al~~lng~~~~g--r~l~V~~a~~~~~ 267 (365)
++|.+|+..|||..|.| +.|+|.++.+..-
T Consensus 77 ~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 77 VSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp HHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred HHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 99999999999999988 9999999987653
No 354
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.46 E-value=1.7e-14 Score=124.02 Aligned_cols=83 Identities=29% Similarity=0.449 Sum_probs=72.7
Q ss_pred CCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEc
Q 017842 277 EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVA 356 (365)
Q Consensus 277 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a 356 (365)
.+.++|||+|||+.+++++|+++|..||.+.. .++++..+++++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 34569999999999999999999999997766 344455678899999999999999999995 9999999999999999
Q ss_pred ccccc
Q 017842 357 EDRQR 361 (365)
Q Consensus 357 ~~~~~ 361 (365)
.++..
T Consensus 89 ~~~~~ 93 (175)
T 1fje_B 89 KGRDS 93 (175)
T ss_dssp CCSSC
T ss_pred CCccc
Confidence 86543
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.6e-14 Score=106.64 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=64.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..++|||+|||+++++++|+.+|++||.|..++ ++. .++|||||+|.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------------------------i~~-----~~~g~afV~f~~~ 52 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVF--------------------------IPK-----PFRAFAFVTFADD 52 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEE--------------------------CCS-----SCCSCCEEECSCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEE--------------------------Eec-----CCCCEEEEEECCH
Confidence 468999999999999999999999999998877 332 2789999999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecCCCCCC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQ 268 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~ 268 (365)
++|++|+. .+..+.|+.|+|.++.++...
T Consensus 53 ~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 53 QIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp HHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred HHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 99976432 134559999999998877554
No 356
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=8.5e-14 Score=122.23 Aligned_cols=76 Identities=22% Similarity=0.425 Sum_probs=71.7
Q ss_pred CceEEEeCCCC-cCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 279 GFRIYVGNLPW-EVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 279 ~~~lfV~nLp~-~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
+++|||+|||+ .+++++|+++|+.||.|..|++++++ +|||||+|.+.++|.+|+..|||..+.|++|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 35999999999 99999999999999999999998774 7899999999999999999999999999999999998
Q ss_pred cc
Q 017842 358 DR 359 (365)
Q Consensus 358 ~~ 359 (365)
.+
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=4.9e-13 Score=105.88 Aligned_cols=83 Identities=18% Similarity=0.053 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCC-CCCccce
Q 017842 156 PPEDAKLFVGNLPY-----DVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRE-TDRSRGF 229 (365)
Q Consensus 156 ~~~~~tvfVgnLp~-----~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~ 229 (365)
+.+.++|+|+||.. +-++++|+.+|++||.|..+. +..++. +++++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~--------------------------i~~~~~~~~~~~G~ 58 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCV--------------------------IFEIPGAPDDEAVR 58 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEE--------------------------EEECSSCCTTTSEE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEE--------------------------EecCCCCCCCCcEE
Confidence 34678999999973 237899999999999999987 666554 3688999
Q ss_pred EEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCC
Q 017842 230 GFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAP 264 (365)
Q Consensus 230 afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~ 264 (365)
|||+|.+.++|.+|+..|||..|+||.|+|.++..
T Consensus 59 ~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 59 IFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred EEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 99999999999999999999999999999998754
No 358
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=6.8e-13 Score=108.08 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccce-EEEEeCCHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGF-GFVTMSTVEE 239 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-afV~f~~~e~ 239 (365)
.|||+|||+.+++++|+.+|++||.|..+. +.. + .|| |||+|.+.++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~--------------------------i~~-~-----~Gf~aFVef~~~~~ 74 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIV--------------------------IFK-R-----NGIQAMVEFESVLC 74 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEE--------------------------EEE-S-----SSEEEEEEESSHHH
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEE--------------------------EEe-C-----CCCEEEEEECCHHH
Confidence 478999999999999999999999999887 322 1 286 9999999999
Q ss_pred HHHHHHHHccCcccC--eeEEEeecCCCCC
Q 017842 240 AEKAVEMFHRYDIDG--RLLTVNKAAPRGT 267 (365)
Q Consensus 240 a~~Al~~lng~~~~g--r~l~V~~a~~~~~ 267 (365)
|..|+..|||..|.| +.|+|.++.++..
T Consensus 75 A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 75 AQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp HHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred HHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 999999999999987 6999999987753
No 359
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=2.4e-13 Score=125.06 Aligned_cols=78 Identities=32% Similarity=0.583 Sum_probs=71.8
Q ss_pred CCCCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEE
Q 017842 276 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV 355 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~ 355 (365)
..+.++|||+|||+.+|+++|+++|+.||.|..|+|.++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345579999999999999999999999999999999643 89999999999999999999999999999999999
Q ss_pred cccc
Q 017842 356 AEDR 359 (365)
Q Consensus 356 a~~~ 359 (365)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8753
No 360
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=3.9e-13 Score=109.27 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+...++|||+|| ++++++|+.+|+.||.|..+. +. .++|||||+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~--------------------------i~------~~kg~aFV~f~ 81 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLS--------------------------MD------PPRNCAFVTYE 81 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEE--------------------------EE------TTTTEEEEECS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEE--------------------------Ee------CCCCEEEEEEC
Confidence 346789999995 799999999999999998876 32 57899999999
Q ss_pred CHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 236 TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 236 ~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
+.++|.+|+..|||..|.|+.|+|.++.++..
T Consensus 82 ~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 82 KMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp SHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 99999999999999999999999999987654
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=3.6e-13 Score=118.45 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.++|||+|||+++++++|+.+|++||.|..++ +.++. +++++|||||+|.+.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--------------------------i~~~~-~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ--------------------------MRRTL-HKAFKGSIFVVFDSIE 161 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEE--------------------------EEECT-TCCEEEEEEEEESSHH
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEE--------------------------EEECC-CCCcccEEEEEECCHH
Confidence 57999999999999999999999999999987 45544 5889999999999999
Q ss_pred HHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 239 EAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 239 ~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
+|.+|+..+ +..++|+.|+|.+....
T Consensus 162 ~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 162 SAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred HHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 999999875 56899999999987654
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=1.2e-12 Score=118.42 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCcc
Q 017842 157 PEDAKLFVGNLPYDV---------DSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSR 227 (365)
Q Consensus 157 ~~~~tvfVgnLp~~~---------t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (365)
...++|||||||..+ ++++|+.+|++||.|..|+ ++ .++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~--------------------------v~------~~k 179 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIR--------------------------YV------ESK 179 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEE--------------------------EE------GGG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEE--------------------------EE------CCC
Confidence 357899999999998 7999999999999999987 33 358
Q ss_pred ceEEEEeCCHHHHHHHHHHHccCcc------------cCeeEEEeecCCCC
Q 017842 228 GFGFVTMSTVEEAEKAVEMFHRYDI------------DGRLLTVNKAAPRG 266 (365)
Q Consensus 228 g~afV~f~~~e~a~~Al~~lng~~~------------~gr~l~V~~a~~~~ 266 (365)
|||||.|.+.++|..|+..|+|..| .|+.|.|.++....
T Consensus 180 G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 180 NCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999999999999999999999999 89999999997543
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.6e-12 Score=98.77 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=59.5
Q ss_pred CcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEccccccC
Q 017842 289 WEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 362 (365)
Q Consensus 289 ~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~~~~~~ 362 (365)
..+++++|+++|+.||.|..|+|+ ++++|||||+|.+.++|.+|+..++ .+.|++|+|.|+++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCCC
Confidence 468999999999999999999998 4679999999999999999999644 478999999999977643
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.4e-12 Score=100.49 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=70.6
Q ss_pred cCCCCCCeEEEcCCCCCCC-----------HHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCC
Q 017842 154 VEPPEDAKLFVGNLPYDVD-----------SEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRE 222 (365)
Q Consensus 154 ~~~~~~~tvfVgnLp~~~t-----------~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (365)
..+.+.++|+|.||..... +++|+.+|++||.|..+. + .+.
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~--------------------------i-~~~- 61 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLL--------------------------L-FDR- 61 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEE--------------------------E-ETT-
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEE--------------------------E-ecC-
Confidence 3566789999999944432 579999999999998875 3 222
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 223 TDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 223 ~~~~~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++.++..
T Consensus 62 --~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 62 --HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp --CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred --CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 3799999999999999999999999999999999999987654
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=6.5e-12 Score=100.83 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=66.0
Q ss_pred CCceEEEeCCCCc----------CcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 017842 278 PGFRIYVGNLPWE----------VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLD 347 (365)
Q Consensus 278 ~~~~lfV~nLp~~----------~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~ 347 (365)
+..+|.+.|+-.. ..+++|++.|++||.|..|.|.++. ++|||||+|.+.++|.+|+..|||+.++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3458999998321 2247899999999999999997653 5999999999999999999999999999
Q ss_pred CeeEEEEEccc
Q 017842 348 GRAIRVNVAED 358 (365)
Q Consensus 348 gr~l~V~~a~~ 358 (365)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999863
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=6.9e-12 Score=119.25 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=67.0
Q ss_pred CCCCceEEEeC--CCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc---CCe-
Q 017842 276 FEPGFRIYVGN--LPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL---DGR- 349 (365)
Q Consensus 276 ~~~~~~lfV~n--Lp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l---~gr- 349 (365)
..++.+|||+| |++.+|+++|+++|++||.|..|++.+ +||||||+|.+.++|.+|+..|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34566999999 589999999999999999999988763 489999999999999999999999977 355
Q ss_pred -eEEEEEccc
Q 017842 350 -AIRVNVAED 358 (365)
Q Consensus 350 -~l~V~~a~~ 358 (365)
.|.|.|+..
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 688888853
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=1.4e-11 Score=97.40 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=67.7
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCC--CC
Q 017842 158 EDAKLFVGNL--PYDVD--------SEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRET--DR 225 (365)
Q Consensus 158 ~~~tvfVgnL--p~~~t--------~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 225 (365)
+.+.|.|.|+ |.+.. .++|+..|++||.|..+. +..+..+ ++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~--------------------------i~~~~~~~~~~ 57 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE--------------------------IPRPVDGVEVP 57 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEE--------------------------CCCCBTTBCCT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEE--------------------------EeccCCCCCcC
Confidence 5789999998 44443 368999999999999987 5545433 47
Q ss_pred ccceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 226 ~~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
++|+|||+|.+.++|.+|+..|||..|+||.|+|.++.
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 89999999999999999999999999999999998764
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=3.3e-12 Score=100.91 Aligned_cols=72 Identities=26% Similarity=0.268 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHHHH------------HccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEE
Q 017842 164 VGNLPYDVDSEKLAMLF------------EKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGF 231 (365)
Q Consensus 164 VgnLp~~~t~~~L~~~F------------~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~af 231 (365)
++|||+.+++++|+.+| ++||.|..+. +..+. .++++||||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~--------------------------i~~~~-~~~~~G~~f 72 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMN--------------------------VCDNL-GDHLVGNVY 72 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE--------------------------ECCSS-SSSSEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEE--------------------------EEeCC-CCCccEEEE
Confidence 67788888888777666 9999999987 55444 478999999
Q ss_pred EEeCCHHHHHHHHHHHccCcccCeeEEEeec
Q 017842 232 VTMSTVEEAEKAVEMFHRYDIDGRLLTVNKA 262 (365)
Q Consensus 232 V~f~~~e~a~~Al~~lng~~~~gr~l~V~~a 262 (365)
|.|.+.++|.+|+..|||..|+||.|+|.++
T Consensus 73 V~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 73 VKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp EEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 9999999999999999999999999999875
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=2.9e-11 Score=97.61 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCC--C---CCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCC----CCCcc
Q 017842 157 PEDAKLFVGNLPY--D---VDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRE----TDRSR 227 (365)
Q Consensus 157 ~~~~tvfVgnLp~--~---~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 227 (365)
++.++|+|.|+-. + -.+++|+..|++||.|..+. |..+.. +++++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~--------------------------I~~~~~~~~~~~~~~ 71 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI--------------------------IYQEKQGEEEDAEII 71 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEE--------------------------EEEEEESSSTTCEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEE--------------------------EeecCCCcccCCcce
Confidence 3688999999942 2 24689999999999999988 444433 46788
Q ss_pred ceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 228 GFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 228 g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
|+|||+|.+.++|.+|+..|||..|+||.|+|.++.
T Consensus 72 G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 72 VKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 999999999999999999999999999999998764
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=8.1e-10 Score=86.39 Aligned_cols=76 Identities=21% Similarity=0.117 Sum_probs=62.0
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEE
Q 017842 159 DAKLFVGNLP-------YDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGF 231 (365)
Q Consensus 159 ~~tvfVgnLp-------~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~af 231 (365)
..+|.|.-.. .++++++|+.+|++||.|..+. ++ ++++||||
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~--------------------------i~-----~~~rGfaF 58 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLV--------------------------LS-----SKKPGTAV 58 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEE--------------------------EE-----SSSSSEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEE--------------------------Ec-----cCCCCEEE
Confidence 3455555544 4689999999999999999887 33 36899999
Q ss_pred EEeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCC
Q 017842 232 VTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT 267 (365)
Q Consensus 232 V~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~ 267 (365)
|+|.+.++|.+|+..+++ +.|++|+|.++.++..
T Consensus 59 VeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 59 VEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp EEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred EEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 999999999999997554 6899999999887654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=2.1e-10 Score=109.00 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=64.4
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 156 PPEDAKLFVGN--LPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 156 ~~~~~tvfVgn--Lp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
..+.++||||| |++.+++++|+++|++||.|..+. +. .++|||||+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~--------------------------~~------~~kgfaFV~ 62 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL--------------------------MP------PNKPYSFAR 62 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEE--------------------------CC------TTCSEEEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEE--------------------------Ee------CCCCEEEEE
Confidence 44678999999 589999999999999999998765 21 258999999
Q ss_pred eCCHHHHHHHHHHHccCccc---Ce--eEEEeecC
Q 017842 234 MSTVEEAEKAVEMFHRYDID---GR--LLTVNKAA 263 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~---gr--~l~V~~a~ 263 (365)
|.+.++|++|+..|||..+. |+ .|+|.++.
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 63 YRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp ESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred ECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 99999999999999998873 45 68888764
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.2e-10 Score=90.70 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=69.0
Q ss_pred CcCCCCceEEEeCCCCc-CcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecC-HHHHHHHHHHhC--CCccCCe
Q 017842 274 RVFEPGFRIYVGNLPWE-VDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSS-ETELNDAIAALD--GQNLDGR 349 (365)
Q Consensus 274 ~~~~~~~~lfV~nLp~~-~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s-~~~a~~Al~~l~--~~~l~gr 349 (365)
...++++.|+|+||++. ++.++|+++|+.||.|.+|.+.++.. .|||+|.+ ..+|..|+..|+ +..|+|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34567889999999999 99999999999999999999988754 59999999 899999999995 6788999
Q ss_pred eEEEEEcc
Q 017842 350 AIRVNVAE 357 (365)
Q Consensus 350 ~l~V~~a~ 357 (365)
.+++++..
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887653
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=6.2e-10 Score=84.39 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=62.6
Q ss_pred CCCceEEEeCCC----CcCcH----HHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 017842 277 EPGFRIYVGNLP----WEVDN----ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG 348 (365)
Q Consensus 277 ~~~~~lfV~nLp----~~~te----e~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g 348 (365)
+|..||+|.-.+ ..+-. .+|.+.|..||.|..+||+.++ +||+|.+.++|.+|+. |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 445588888776 22323 6799999999999999999763 8999999999999999 99999999
Q ss_pred eeEEEEEcccc
Q 017842 349 RAIRVNVAEDR 359 (365)
Q Consensus 349 r~l~V~~a~~~ 359 (365)
|.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998754
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.97 E-value=1.9e-09 Score=86.31 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCC
Q 017842 156 PPEDAKLFVGNLPYDV----------DSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDR 225 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~----------t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (365)
+.+.+.|.+.|+=... .+++|+..|++||.|..+. +..+ .
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~--------------------------i~~~----~ 53 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIY--------------------------VDKN----S 53 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEE--------------------------ECTT----C
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEE--------------------------EecC----C
Confidence 4467789999884322 2357899999999998876 3222 2
Q ss_pred ccceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 226 SRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 226 ~~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
.+|+|||.|.+.++|.+|+..|||..|+||.|+|.++.
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 58999999999999999999999999999999998874
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=4.1e-09 Score=94.18 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=62.0
Q ss_pred cCcHHHHHHHHhccCCeEEEEEEeeCCC----CCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 290 EVDNARLEQVFSEHGKVVNARVVYDRET----GRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 290 ~~tee~L~~~F~~~G~V~~v~i~~d~~~----~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
...+++|++.|++||.|..+.|+++..+ ++++|++||+|.+.++|.+|+..|||+.+.||.|++.|+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3467899999999999999999966544 4899999999999999999999999999999999999986
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=7.4e-09 Score=78.49 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccc
Q 017842 157 PEDAKLFVGNLPY----DVDS----EKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRG 228 (365)
Q Consensus 157 ~~~~tvfVgnLp~----~~t~----~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 228 (365)
+++.||+|..+|. +.-. .+|.+.|.+||.|..++ ++.+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr--------------------------~~~d-------- 50 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIR--------------------------FVED-------- 50 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEE--------------------------ECSS--------
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEE--------------------------EecC--------
Confidence 5678999998873 3333 67999999999998877 4433
Q ss_pred eEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecCCC
Q 017842 229 FGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 265 (365)
Q Consensus 229 ~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~ 265 (365)
.+||+|.+.++|.+|+. |||..+.||.|+|+.+.+.
T Consensus 51 ~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 51 KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 28999999999999999 7999999999999987753
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=3.7e-09 Score=80.53 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred CCCCceEEEeCCCCc-----CcH----HHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 017842 276 FEPGFRIYVGNLPWE-----VDN----ARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNL 346 (365)
Q Consensus 276 ~~~~~~lfV~nLp~~-----~te----e~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l 346 (365)
.+|..||+|.-++.. +-. .+|.+.|..||.|..+||+.++ +||+|.+.++|.+||. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345569999988742 222 5699999999999999999773 9999999999999999 999999
Q ss_pred CCeeEEEEEc
Q 017842 347 DGRAIRVNVA 356 (365)
Q Consensus 347 ~gr~l~V~~a 356 (365)
+||.|+|++-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999974
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=4.5e-08 Score=78.74 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=62.0
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 157 PEDAKLFVGNLPYD-VDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 157 ~~~~tvfVgnLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+....|||+||+++ ++.++|+.+|+.||.|..|.+ .. ....|||.|.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~--------------------------~~------g~~tgfVrf~ 63 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF--------------------------VR------GAKEGIILFK 63 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC--------------------------CT------TCSEEEEEES
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE--------------------------ec------CCCEEEEEEC
Confidence 45789999999999 999999999999999988763 22 2336999999
Q ss_pred C-HHHHHHHHHHHc--cCcccCeeEEEeec
Q 017842 236 T-VEEAEKAVEMFH--RYDIDGRLLTVNKA 262 (365)
Q Consensus 236 ~-~e~a~~Al~~ln--g~~~~gr~l~V~~a 262 (365)
+ ..+|..|+..+| |..|.|..+++...
T Consensus 64 ~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 64 EKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 9 889999999984 78889988887643
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=3.7e-08 Score=75.02 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=60.1
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCc
Q 017842 156 PPEDAKLFVGNLPYD-----VDS----EKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRS 226 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~-----~t~----~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
-+++.||+|..++.+ .-. .+|.+.|..||.|..++ ++.++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr--------------------------~v~d~----- 60 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVR--------------------------INQGQ----- 60 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEE--------------------------EETTE-----
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEE--------------------------EecCc-----
Confidence 356789999999754 222 56899999999988877 44333
Q ss_pred cceEEEEeCCHHHHHHHHHHHccCcccCeeEEEeecC
Q 017842 227 RGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 227 ~g~afV~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
+||+|.+.++|.+|+. |||..+.||.|+|++..
T Consensus 61 ---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 61 ---MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp ---EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred ---EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 9999999999999999 79999999999998754
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.54 E-value=1.6e-07 Score=83.72 Aligned_cols=70 Identities=17% Similarity=0.063 Sum_probs=58.4
Q ss_pred CHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHHHHHHHHHccCc
Q 017842 172 DSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 251 (365)
Q Consensus 172 t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a~~Al~~lng~~ 251 (365)
.+++|+..|++||.|..+.|... ...+..+++++|++||+|.+.++|.+|+..|||..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~----------------------~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQE----------------------KQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEE----------------------ECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHccCCeEEEEEecC----------------------CCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 56789999999999999873211 11234466899999999999999999999999999
Q ss_pred ccCeeEEEeecC
Q 017842 252 IDGRLLTVNKAA 263 (365)
Q Consensus 252 ~~gr~l~V~~a~ 263 (365)
|+||.|+|.++.
T Consensus 200 ~~gr~i~~~~~~ 211 (222)
T 3dxb_A 200 FAGRKVVAEVYD 211 (222)
T ss_dssp SSSSBCEEEECC
T ss_pred ECCeEEEEEEcC
Confidence 999999998764
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=7.1e-07 Score=69.37 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=65.5
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhcc-----CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEH-----GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~-----G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
.++|-+-|||-.+++..|+.+.+.+ |.+..+.+..| -|-|+|+|.+...|.+|..+|+|..|.||+|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 3489999999999999999999999 99999999887 446999999999999999999999999999998
Q ss_pred EE
Q 017842 354 NV 355 (365)
Q Consensus 354 ~~ 355 (365)
.=
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 63
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=6.8e-05 Score=57.73 Aligned_cols=88 Identities=25% Similarity=0.341 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHc-----cCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEE
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEK-----AGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~-----~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 232 (365)
...+|.|.|||..+.++.|.-+|+. -|.|..+. +. .+-|+|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~----------------------------~~------~~~AvI 52 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQ----------------------------RL------GCGGVL 52 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEE----------------------------EE------TTEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEE----------------------------Ec------CCcEEE
Confidence 4679999999999999999999976 25776654 11 167999
Q ss_pred EeCCHHHHHHHHHHHccCcccCeeEEEeecCCCCCCCCCCCCcCCCCceEEEeCCCCcCc
Q 017842 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVD 292 (365)
Q Consensus 233 ~f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t 292 (365)
+|.+...|++.++. ....|+|..|.|....++... +|++.||+..++
T Consensus 53 tF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~~~~------------r~ll~gl~~~t~ 99 (104)
T 2dhx_A 53 TFREPADAERVLAQ-ADHELHGAQLSLRPAPPRAPA------------RLLLQGLPPGTS 99 (104)
T ss_dssp EESSHHHHHHHHTC-SCCBSSSSBCEEEECCCCCCC------------CCCCCSCCCCCC
T ss_pred EEcChHHHHHHhcC-CcceecCeEEEEEcCCCCCcc------------eEeeecCCCCCC
Confidence 99999999999885 588999999999876655432 788999987653
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=5.8e-05 Score=58.67 Aligned_cols=72 Identities=7% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHcc-----CCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEE
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKA-----GTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFV 232 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~-----G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 232 (365)
..++|=+-|||-.++...++.+...+ |.+..+.++ ...+-|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~--------------------------------pDH~GAiv 67 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV--------------------------------SDFNGAII 67 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE--------------------------------TTTTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe--------------------------------cCCCceEE
Confidence 47899999999999999999999999 888776533 23566999
Q ss_pred EeCCHHHHHHHHHHHccCcccCeeEEEee
Q 017842 233 TMSTVEEAEKAVEMFHRYDIDGRLLTVNK 261 (365)
Q Consensus 233 ~f~~~e~a~~Al~~lng~~~~gr~l~V~~ 261 (365)
+|.+...|-+|.-.|+|..|.||.|++..
T Consensus 68 ef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 68 IFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp ECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred EEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 99999999999988999999999999953
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.57 E-value=0.00036 Score=52.86 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=62.4
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCC--cceEEEEEecCHHHHHHHHHHhCCCccC---C--eeEE
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGR--SRGFGFVTMSSETELNDAIAALDGQNLD---G--RAIR 352 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~--~kG~afV~F~s~~~a~~Al~~l~~~~l~---g--r~l~ 352 (365)
++|.|++||..+|++++++.+.....+...+.+....+.. .-..|||.|.+.+++....+.++|..+. | .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 3799999999999999999999999888877766544322 2346999999999999999999999883 2 2445
Q ss_pred EEEcc
Q 017842 353 VNVAE 357 (365)
Q Consensus 353 V~~a~ 357 (365)
|.||-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66664
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.00054 Score=52.93 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=62.1
Q ss_pred CceEEEeCCCCcC-c----HHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 279 GFRIYVGNLPWEV-D----NARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 279 ~~~lfV~nLp~~~-t----ee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
.++|+|.||+..+ . .+.++.+|..|+.+......+.- .-..|.|.+.++|.+|...||+..+.|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999998654 2 36789999999988877666432 24789999999999999999999999999999
Q ss_pred EEcccc
Q 017842 354 NVAEDR 359 (365)
Q Consensus 354 ~~a~~~ 359 (365)
-|+.+-
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.0028 Score=48.77 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=60.7
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhcc-----CCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEE
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEH-----GKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRV 353 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~-----G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V 353 (365)
+.+|.|.|||..+.++.|.-+|+.- |.|..+.... +-|+|+|.+...|.+.|+ -..+.|.|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 4599999999999999999999872 5788887652 469999999999999998 3488999999999
Q ss_pred EEccccc
Q 017842 354 NVAEDRQ 360 (365)
Q Consensus 354 ~~a~~~~ 360 (365)
.-.-++.
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 7665544
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.98 E-value=0.0034 Score=48.40 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=60.7
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEE
Q 017842 159 DAKLFVGNLPYDV-D----SEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVT 233 (365)
Q Consensus 159 ~~tvfVgnLp~~~-t----~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 233 (365)
..+|+|.||+.++ . ...++.+|..|+++.... .. ++-.-.-|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~--------------------------~l------kSFRRirv~ 52 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQ--------------------------YF------KSFKRVRIN 52 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEE--------------------------EE------TTTTEEEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCccee--------------------------ec------CcceEEEEE
Confidence 4689999998876 2 257899999999886643 11 222346789
Q ss_pred eCCHHHHHHHHHHHccCcccCeeEEEeecCCCC
Q 017842 234 MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRG 266 (365)
Q Consensus 234 f~~~e~a~~Al~~lng~~~~gr~l~V~~a~~~~ 266 (365)
|.+.++|.+|-..|++..|+|+.|+|..+.+..
T Consensus 53 F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 53 FSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp CSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred eCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 999999999999999999999999999887443
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.86 E-value=0.0036 Score=47.30 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=51.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHH
Q 017842 160 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEE 239 (365)
Q Consensus 160 ~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~ 239 (365)
.+|-|++||+.+|++++.+.+..+..+..... ..|. +- ......+-|||.|.+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~f----v~G~-----------------~s---~~~~~~SRaYi~f~~~e~ 57 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEF----FSND-----------------TS---LYPHMYARAYINFKNQED 57 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEE----EESC-----------------CS---STTCCCEEEEEEESSSHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEE----eCCc-----------------cC---CCCCcceEEEEEeCCHHH
Confidence 47899999999999999999998876543321 1111 00 011234569999999999
Q ss_pred HHHHHHHHccCccc
Q 017842 240 AEKAVEMFHRYDID 253 (365)
Q Consensus 240 a~~Al~~lng~~~~ 253 (365)
+......++|..|.
T Consensus 58 v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 58 IILFRDRFDGYVFL 71 (91)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHhCCcEEE
Confidence 99999999998874
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.52 E-value=0.014 Score=46.23 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=57.8
Q ss_pred CceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC-eeEEEEEcc
Q 017842 279 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDG-RAIRVNVAE 357 (365)
Q Consensus 279 ~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~g-r~l~V~~a~ 357 (365)
.+-|.|-+.|... -..|..+|+.||.|...... ....+..|+|.+..+|.+||. .||..+.| --|-|..+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 3478898998874 66777899999999988762 124589999999999999999 79999975 677777764
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.52 E-value=0.003 Score=48.13 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=56.6
Q ss_pred ceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCc--ceEEEEEecCHHHHHHHHHHhCCCccC---C--eeEE
Q 017842 280 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRS--RGFGFVTMSSETELNDAIAALDGQNLD---G--RAIR 352 (365)
Q Consensus 280 ~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~--kG~afV~F~s~~~a~~Al~~l~~~~l~---g--r~l~ 352 (365)
.+|.|+.||..+|++++++.+...-.+.....+....+.++ -..|||.|.+.+++....+.++|..+. | -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 37999999999999999998887655544443332222111 235899999999999999999999873 2 2556
Q ss_pred EEEcc
Q 017842 353 VNVAE 357 (365)
Q Consensus 353 V~~a~ 357 (365)
|.||-
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 66663
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.17 E-value=0.012 Score=44.71 Aligned_cols=58 Identities=28% Similarity=0.464 Sum_probs=45.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeC
Q 017842 156 PPEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMS 235 (365)
Q Consensus 156 ~~~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 235 (365)
+.....++| +.|......+|.++|+.||.|. |++ + +-.-|||.|.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~W------------------------i-------dDTsAlvvf~ 57 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISW------------------------I-------DDTSAFVSLS 57 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEE------------------------E-------ETTEEEEECS
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEE---EEE------------------------E-------cCCeEEEEec
Confidence 334555666 9999999999999999999553 332 2 2346999999
Q ss_pred CHHHHHHHHHHHc
Q 017842 236 TVEEAEKAVEMFH 248 (365)
Q Consensus 236 ~~e~a~~Al~~ln 248 (365)
+++.|..|+..++
T Consensus 58 ~~~~a~~al~~i~ 70 (100)
T 1whv_A 58 QPEQVQIAVNTSK 70 (100)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc
Confidence 9999999999764
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.08 E-value=0.014 Score=46.27 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=57.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.+.|.|-+.|... ...+...|++||.|.... . .....+-+|.|.++.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~--------------------------~------~~~~NWihI~Y~s~~ 70 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHV--------------------------M------SNTGNWMHIRYQSKL 70 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEE--------------------------E------CSSSSEEEEEESSHH
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEec--------------------------c------CCCCCeEEEEeCCHH
Confidence 5689999999885 667889999999997654 1 134678999999999
Q ss_pred HHHHHHHHHccCcccC-eeEEEeecC
Q 017842 239 EAEKAVEMFHRYDIDG-RLLTVNKAA 263 (365)
Q Consensus 239 ~a~~Al~~lng~~~~g-r~l~V~~a~ 263 (365)
+|++||.. ||..|.| -.|-|.+..
T Consensus 71 ~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 71 QARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp HHHHHHTT-TTCEETTTEECEEEECC
T ss_pred HHHHHHHh-CCeEecCCEEEEEEECC
Confidence 99999998 9999975 667776654
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.92 E-value=0.01 Score=45.20 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=45.3
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 342 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~ 342 (365)
.++| +.|..+.-.+|.++|+.|| -..|+.+-|. .|||.|.+...|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999 5567777653 69999999999999999764
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.79 E-value=0.026 Score=42.86 Aligned_cols=53 Identities=25% Similarity=0.363 Sum_probs=44.8
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALD 342 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~ 342 (365)
.++| +.|..+.-.+|.++|+.||. ..|+.+.|. .|||.|.+...|..|+..++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 5556 99999999999999999994 456666553 69999999999999999663
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.04 E-value=0.016 Score=44.05 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
.-+|-|++||+.+|++++.+.++.+-.+.. +....|... .....-.-|||.|.+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~----~~fv~G~~s--------------------~~~~~~SRAYI~F~~~e 64 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDY----FEFFAADLS--------------------LYPHLYSRAYINFRNPD 64 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEE----CCCCCCCSS--------------------SCCSCCCCCEEEESCHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccce----EEEeCCccC--------------------CCCCcceEEEEEeCCHH
Confidence 347999999999999998877766433211 001111100 01122356999999999
Q ss_pred HHHHHHHHHccCccc
Q 017842 239 EAEKAVEMFHRYDID 253 (365)
Q Consensus 239 ~a~~Al~~lng~~~~ 253 (365)
++......++|..|.
T Consensus 65 dv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 65 DILLFRDRFDGYIFL 79 (97)
T ss_dssp HHHHHHHHSTTEEEE
T ss_pred HHHHHHHHcCCcEEE
Confidence 999999999998773
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.47 E-value=0.041 Score=41.91 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=42.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHHHH
Q 017842 161 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVEEA 240 (365)
Q Consensus 161 tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e~a 240 (365)
.++| +.|......+|.++|+.||.| .|+|. +-.-|||.|.+++.|
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv---~I~Wi-------------------------------dDTsAlvvf~~~~~a 52 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI---QISWI-------------------------------DDTSAFVSLSQPEQV 52 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE---EEEEE-------------------------------ETTEEEEEEEEECHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE---EEEEE-------------------------------cCCeEEEEecCHHHH
Confidence 3455 999999999999999999943 44432 234699999999999
Q ss_pred HHHHHHHc
Q 017842 241 EKAVEMFH 248 (365)
Q Consensus 241 ~~Al~~ln 248 (365)
..|+..++
T Consensus 53 ~~al~~i~ 60 (101)
T 3ctr_A 53 KIAVNTSK 60 (101)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcc
Confidence 99999765
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.14 E-value=0.056 Score=43.36 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=54.7
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEE-EEEEee--------CCCC-----CcceEEEEEecCHHHHHHHHHHhCCCcc
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVN-ARVVYD--------RETG-----RSRGFGFVTMSSETELNDAIAALDGQNL 346 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~-v~i~~d--------~~~~-----~~kG~afV~F~s~~~a~~Al~~l~~~~l 346 (365)
-|.|-+.|.... ..+-+.|++||.|.. +.+.+. +... .+..+..|+|.+..+|.+||. .||..|
T Consensus 9 ~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe
Confidence 677878876544 456678999998876 222110 0001 135678999999999999999 799999
Q ss_pred CCeeEEEEEccc
Q 017842 347 DGRAIRVNVAED 358 (365)
Q Consensus 347 ~gr~l~V~~a~~ 358 (365)
.|.-|-|..+.+
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999888887754
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.59 E-value=0.1 Score=41.91 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=54.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCC-CccceEEEEeCCH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETD-RSRGFGFVTMSTV 237 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~afV~f~~~ 237 (365)
+..|.|=+.|.+.+. .+...|++||.|..-.-+.+ +... .+ ... ....+... ...++..|.|.+.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~---~~~~-----~~---~~~--~~~k~yP~f~g~NWikItYds~ 72 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLR---KPQA-----MT---VGL--QDRQFVPIFSGNSWTKITYDNP 72 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGC---CC---------------------CCCCCEETTEEEEEBSSH
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccc---cccc-----cc---ccc--ccccccCccCCCcEEEEEcCCH
Confidence 456778788776655 57788999999854110000 0000 00 000 00000111 1367889999999
Q ss_pred HHHHHHHHHHccCcccCeeEEEeecC
Q 017842 238 EEAEKAVEMFHRYDIDGRLLTVNKAA 263 (365)
Q Consensus 238 e~a~~Al~~lng~~~~gr~l~V~~a~ 263 (365)
.+|.+||.. ||..|+|..|-|.++.
T Consensus 73 ~~A~rAL~~-NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 73 ASAVDALLE-NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHHHTT-TTCEETTEECEEEECC
T ss_pred HHHHHHHHh-CCeEeCcEEEEEEECC
Confidence 999999998 9999999888887654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.87 E-value=0.054 Score=53.03 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=40.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCH
Q 017842 158 EDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTV 237 (365)
Q Consensus 158 ~~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 237 (365)
..|+|||. +|...++.+|.++|++||+|..+.+ +. ....||.|+|.+.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~----------------------------~~---~~g~~~~vef~~~ 99 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFF----------------------------YE---SFGLYAVVEFCQK 99 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEE----------------------------EC---SSSEEEEEECC--
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEE----------------------------Ec---cCCeEEEEEeCCH
Confidence 46899997 7999999999999999999988652 11 2237999999999
Q ss_pred HHHHHHHHH
Q 017842 238 EEAEKAVEM 246 (365)
Q Consensus 238 e~a~~Al~~ 246 (365)
+++..++..
T Consensus 100 ~~~~~~~~~ 108 (464)
T 3pq1_A 100 ESIGSLQNG 108 (464)
T ss_dssp -CCHHHHSS
T ss_pred HHHHHHHhc
Confidence 998866543
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.50 E-value=0.066 Score=52.44 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=40.5
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHH
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIA 339 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~ 339 (365)
+|+|. .|...++.+|.++|+.||.|..+.+..+. .-||.|+|.+.+++..++.
T Consensus 55 sv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 55 TVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp EEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred eEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 89997 68899999999999999999999887542 3599999999999887765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.67 E-value=7.1 Score=38.52 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=44.2
Q ss_pred eEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 017842 281 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDG 343 (365)
Q Consensus 281 ~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~ 343 (365)
.++|+ +|..+...+|.++|+.||.| .|+.+.+ ..|||.|.+.+.|..+++.++.
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 67776 88899999999999999954 5555533 3699999999999999998854
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.11 E-value=9.8 Score=37.51 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=43.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHccCCeEEEEEeeeeccCCCcccceeeeeeeeeeeeEEecCCCCCccceEEEEeCCHH
Q 017842 159 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVKFHFLFGNQGFHMWVCAVFYVSLLQVIYNRETDRSRGFGFVTMSTVE 238 (365)
Q Consensus 159 ~~tvfVgnLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~e 238 (365)
...++|+ +|..+...+|.++|+.||.+.. ++ -+...|||.|.+.+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V---~w-------------------------------iddt~a~V~~~~~~ 484 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQI---SW-------------------------------IDDTSAFVSLSQPE 484 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEE---EE-------------------------------CSSSEEEEECSCHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEE---EE-------------------------------EcCCeEEEEECCHH
Confidence 4466666 8888999999999999996532 21 23456999999999
Q ss_pred HHHHHHHHHc
Q 017842 239 EAEKAVEMFH 248 (365)
Q Consensus 239 ~a~~Al~~ln 248 (365)
.|..++..++
T Consensus 485 ~a~~~l~~~~ 494 (507)
T 3d45_A 485 QVQIAVNTSK 494 (507)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.45 E-value=14 Score=25.87 Aligned_cols=59 Identities=8% Similarity=0.231 Sum_probs=38.5
Q ss_pred cCcHHHHHHHHhccC-----CeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeeEEEEEcc
Q 017842 290 EVDNARLEQVFSEHG-----KVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 357 (365)
Q Consensus 290 ~~tee~L~~~F~~~G-----~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l~~~~l~gr~l~V~~a~ 357 (365)
.+...+|-.++...+ .|-.+.|. ..|.||+-.. ..+..++..|++..+.|++++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 344555555555433 56677775 2378999887 46888999999999999999998875
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=38.14 E-value=1.2e+02 Score=22.29 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCceEEEeCCCCcCcHHHHHHHHhccCCeEEEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh
Q 017842 278 PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAAL 341 (365)
Q Consensus 278 ~~~~lfV~nLp~~~tee~L~~~F~~~G~V~~v~i~~d~~~~~~kG~afV~F~s~~~a~~Al~~l 341 (365)
..|-|-|-|+|..+-..++--.....|.--+|..+ .|-|.|.|.+.+...-|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 34578899999998888877777777776666554 467999999999999999877
No 405
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.20 E-value=80 Score=23.03 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.3
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecC
Q 017842 305 KVVNARVVYDRETGRSRGFGFVTMSS 330 (365)
Q Consensus 305 ~V~~v~i~~d~~~~~~kG~afV~F~s 330 (365)
.|+.|+|.+-...|+-+|||-|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998776778999999999975
No 406
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.61 E-value=1e+02 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.0
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecC
Q 017842 305 KVVNARVVYDRETGRSRGFGFVTMSS 330 (365)
Q Consensus 305 ~V~~v~i~~d~~~~~~kG~afV~F~s 330 (365)
.|+.|+|.+-...|+-+|||-|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57889888776678999999999975
No 407
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.37 E-value=1e+02 Score=23.15 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.2
Q ss_pred CeEEEEEEeeCCCCCcceEEEEEecC
Q 017842 305 KVVNARVVYDRETGRSRGFGFVTMSS 330 (365)
Q Consensus 305 ~V~~v~i~~d~~~~~~kG~afV~F~s 330 (365)
.|+.|+|.+-...|+-+|||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998776678999999999975
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.58 E-value=1.8e+02 Score=24.08 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=37.9
Q ss_pred eEEEeCCCCc---------CcHHHHHHHH--hccCCeEEEEEEeeCCCCCcceEEEEEecC-HHHHHHHHH
Q 017842 281 RIYVGNLPWE---------VDNARLEQVF--SEHGKVVNARVVYDRETGRSRGFGFVTMSS-ETELNDAIA 339 (365)
Q Consensus 281 ~lfV~nLp~~---------~tee~L~~~F--~~~G~V~~v~i~~d~~~~~~kG~afV~F~s-~~~a~~Al~ 339 (365)
.+.|-|+|.. .....|++.| ..|..+. |+.+.+. .-+.|+|.|.|.+ -.....|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 6778888862 3347899977 8897655 5565554 3468999999986 334444444
Done!