Query 017843
Match_columns 365
No_of_seqs 151 out of 984
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 1.3E-37 2.7E-42 291.8 12.9 169 177-345 46-218 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.8 1.7E-21 3.7E-26 150.8 4.8 68 273-340 1-68 (68)
3 KOG1944 Peroxisomal membrane p 73.7 8.3 0.00018 36.7 6.0 51 119-169 46-97 (222)
4 PF04639 Baculo_E56: Baculovir 38.7 48 0.001 33.2 4.6 87 59-147 216-302 (305)
5 PF07423 DUF1510: Protein of u 34.5 34 0.00074 32.8 2.8 26 117-142 4-29 (217)
6 PF10929 DUF2811: Protein of u 27.6 90 0.0019 24.0 3.5 28 197-226 12-39 (57)
7 PF03818 MadM: Malonate/sodium 26.2 1.6E+02 0.0035 22.9 4.6 36 172-207 3-38 (60)
8 KOG2489 Transmembrane protein 25.4 1.6E+02 0.0034 32.0 6.0 46 115-160 426-471 (592)
9 COG0534 NorM Na+-driven multid 21.6 9.1E+02 0.02 25.0 10.9 93 184-279 65-162 (455)
10 cd07215 Pat17_PNPLA8_PNPLA9_li 19.5 97 0.0021 30.7 3.0 52 144-195 1-56 (329)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=291.76 Aligned_cols=169 Identities=32% Similarity=0.668 Sum_probs=160.7
Q ss_pred HHhCChhHHHHHHHHHH-HHHHHHHHhHhCCC---CCCcchHHHHHHHHHHhhhhhHHHhHHHHHhhhhcCCCCccchhh
Q 017843 177 LKTNPVLAKMVISGVVY-SLGDWIAQCFQGKP---LFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPA 252 (365)
Q Consensus 177 L~~~PLlTK~iTSGvL~-~lGDliAQ~ie~k~---~~~~D~~Rt~rfal~G~~~~GPl~H~WY~~Ldr~fP~~s~~~vl~ 252 (365)
...+|+++++++++.+. .+||+++|.+++++ ...+|+.|++||+++|+++.||.+|+||++|++++|.++..+++.
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~ 125 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVK 125 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHH
Confidence 46789999999998888 99999999998765 578999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhcCCChhHHHHHHHHhhHHHHhhccchhhHHHhhhhhcccCCchhhhhhHHHHHHHH
Q 017843 253 KVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVT 332 (365)
Q Consensus 253 KVllDQlV~sPi~~~~Ff~~~~lLeG~s~~ei~~klk~~~~p~L~aswkvWPpaq~INF~fVP~~~Rvlfvn~V~~~Wnt 332 (365)
|+++||++++|+.+.+||.++++++|++.+++..+++++++|+++++|++||++|++||.+||+++|++|+|+++++|++
T Consensus 126 kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~ 205 (222)
T KOG1944|consen 126 KVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNT 205 (222)
T ss_pred HHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhh
Q 017843 333 ILSTYSNEKSEAR 345 (365)
Q Consensus 333 yLS~l~n~k~ea~ 345 (365)
|||++++++.+.+
T Consensus 206 ~Ls~~~~~~~~~~ 218 (222)
T KOG1944|consen 206 YLSYKNASLVELA 218 (222)
T ss_pred HHHHHhhcccccc
Confidence 9999998874443
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.84 E-value=1.7e-21 Score=150.81 Aligned_cols=68 Identities=41% Similarity=0.778 Sum_probs=66.0
Q ss_pred HHHhcCCChhHHHHHHHHhhHHHHhhccchhhHHHhhhhhcccCCchhhhhhHHHHHHHHHHhhhccc
Q 017843 273 LGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNE 340 (365)
Q Consensus 273 ~~lLeG~s~~ei~~klk~~~~p~L~aswkvWPpaq~INF~fVP~~~Rvlfvn~V~~~WntyLS~l~n~ 340 (365)
|++++|+++++++++++++|+++++++|++|||+|++||.|||+++|++|+|+|+++|++|||++.|+
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=73.72 E-value=8.3 Score=36.66 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=45.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHHhhhheeEeeeccc-cccccHHHHHHHhhHHH
Q 017843 119 EEMERLIDRTINATIVLAVGTFAITKLLTIDQDY-WHGWTIFEIVRYAPLHN 169 (365)
Q Consensus 119 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~id~~~-~~Gwt~~eil~~~p~~l 169 (365)
.+...++.+.++..++...++-++.+.+++++++ +++|.+..++|.++-+.
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~ 97 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGF 97 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhh
Confidence 4567888889999999889999999999999999 89999999999998774
No 4
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=38.75 E-value=48 Score=33.20 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=46.3
Q ss_pred ccccccccCCCcccccCCceeeeccCccccccccccccccCCcccccCCcCCchhhhccchHHHHHHHhhhhHHHHHHHH
Q 017843 59 ELDVLPVQSQDLTDMQEGVVVGREEDGELASQVSQVSGFSDGTLSFDGFSSASADERRGNEEMERLIDRTINATIVLAVG 138 (365)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 138 (365)
-+|.-.-|--|..|-.++---.-.|.-.++.-++-.|. ++.+.-+|+.+.|+.+.....++=-=+=-.|=+.|++++.
T Consensus 216 ~Adp~S~QYvDIS~L~~nqtI~CiEPYd~gDLIgDLGL--D~LLGe~Gl~~~SSnss~S~s~~l~piil~IG~vl~i~~I 293 (305)
T PF04639_consen 216 NADPDSPQYVDISDLAPNQTIQCIEPYDFGDLIGDLGL--DWLLGENGLITKSSNSSKSVSDSLLPIILIIGGVLLIVFI 293 (305)
T ss_pred CCCCCCcccccHHHcCCCCeEEEecCCcHHHHHHhccc--ccccCcccccccccCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 34544555555555555555555665555555555554 7777778887666544332222211122233444555666
Q ss_pred HhhhheeEe
Q 017843 139 TFAITKLLT 147 (365)
Q Consensus 139 ~~~~~~~~~ 147 (365)
+|.|||.+.
T Consensus 294 g~~ifK~~~ 302 (305)
T PF04639_consen 294 GYFIFKRLM 302 (305)
T ss_pred hheeeEeec
Confidence 677777653
No 5
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=34.49 E-value=34 Score=32.78 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.0
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHhhh
Q 017843 117 GNEEMERLIDRTINATIVLAVGTFAI 142 (365)
Q Consensus 117 ~~~~~~~~~~~~~n~~~~~~~~~~~~ 142 (365)
...+++|..++.||.+|.+++++.+|
T Consensus 4 ~~r~KrRK~N~iLNiaI~IV~lLIii 29 (217)
T PF07423_consen 4 QQRQKRRKTNKILNIAIGIVSLLIII 29 (217)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 34678999999999999888876644
No 6
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=27.61 E-value=90 Score=24.04 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=21.5
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHHHHhhh
Q 017843 197 DWIAQCFQGKPLFEFDRTRMFRSGLVGFTL 226 (365)
Q Consensus 197 DliAQ~ie~k~~~~~D~~Rt~rfal~G~~~ 226 (365)
+.+.+.++..| .+|..|.+..|+.||++
T Consensus 12 ~~m~~fie~hP--~WDQ~Rl~~aALa~FL~ 39 (57)
T PF10929_consen 12 QAMKDFIETHP--NWDQYRLFQAALAGFLL 39 (57)
T ss_pred HHHHHHHHcCC--CchHHHHHHHHHHHHHH
Confidence 44555566655 79999999999999986
No 7
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=26.16 E-value=1.6e+02 Score=22.93 Aligned_cols=36 Identities=14% Similarity=0.399 Sum_probs=32.2
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHHHHhHhCCC
Q 017843 172 AYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKP 207 (365)
Q Consensus 172 ~Y~~~L~~~PLlTK~iTSGvL~~lGDliAQ~ie~k~ 207 (365)
...+.+.+|.|.|..+.-|+++.++-+++-++.+.+
T Consensus 3 ~i~~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~Gr 38 (60)
T PF03818_consen 3 MIEKVLTKNGLITAFAVVGIIMWVSYWLSKKLTRGR 38 (60)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456789999999999999999999999999998654
No 8
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=25.39 E-value=1.6e+02 Score=31.99 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=37.4
Q ss_pred hccchHHHHHHHhhhhHHHHHHHHHhhhheeEeeeccccccccHHH
Q 017843 115 RRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFE 160 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~id~~~~~Gwt~~e 160 (365)
+++-.+-+++.=|.+--++.-..++||||+++-+-|-=|..|.++-
T Consensus 426 E~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~ 471 (592)
T KOG2489|consen 426 ESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNS 471 (592)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHH
Confidence 3344566777778888888899999999999999998888887653
No 9
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=21.57 E-value=9.1e+02 Score=24.97 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhCCCCCCcchHHHHHHHHHHhhhhh-HHHhHHHHHhhhhc---CC-CCccchhhHHHHhh
Q 017843 184 AKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHG-SLSHYYYQFCEELF---PF-QDWWVVPAKVAFDQ 258 (365)
Q Consensus 184 TK~iTSGvL~~lGDliAQ~ie~k~~~~~D~~Rt~rfal~G~~~~G-Pl~H~WY~~Ldr~f---P~-~s~~~vl~KVllDQ 258 (365)
.-++..|+..+.+=++||.+-.++ .-+.+|+.+.+++-.++.| ++.-..+-+.+.++ .. ..... ..+--+--
T Consensus 65 ~~~~~~gl~~g~~~liaq~~Ga~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~-~a~~Yl~i 141 (455)
T COG0534 65 IIAIFIGLGTGTTVLVAQAIGAGD--RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLE-LAAEYLRI 141 (455)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHH-HHHHHHHH
Confidence 456778888999999999986542 3567788888777655556 55555554445443 22 21111 11111112
Q ss_pred hhhhhHHHHHHHHHHHHhcCC
Q 017843 259 TAWAAAWNSIYYMVLGLLRLE 279 (365)
Q Consensus 259 lV~sPi~~~~Ff~~~~lLeG~ 279 (365)
.+++-.....+++..+++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~lr~~ 162 (455)
T COG0534 142 ILLGAPFALLSFVLSGILRGL 162 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 223333445566667777764
No 10
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=19.50 E-value=97 Score=30.68 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=37.4
Q ss_pred eeEeeeccccccccHHHHHHHhhHHHHHHH----HHHHHhCChhHHHHHHHHHHHH
Q 017843 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAY----EEALKTNPVLAKMVISGVVYSL 195 (365)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y----~~~L~~~PLlTK~iTSGvL~~l 195 (365)
+||.+|.|=.||=..-.||.++-.++-..+ ....+.-.+++-+-|+|++.++
T Consensus 1 rILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~~ 56 (329)
T cd07215 1 RILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCL 56 (329)
T ss_pred CEEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHHH
Confidence 589999999999999999988887763222 1233444577777777776653
Done!