Query 017843
Match_columns 365
No_of_seqs 151 out of 984
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrd_A LH-1, light-harvesting 16.4 1.7E+02 0.0059 21.1 4.0 31 210-240 7-43 (52)
2 4aw6_A CAAX prenyl protease 1 6.5 8.1E+02 0.028 24.6 6.5 51 220-270 131-187 (482)
3 3pev_B Nucleoporin GLE1; RECA, 6.0 3.3E+02 0.011 25.8 3.1 78 117-203 166-247 (297)
4 1p58_D Envelope protein M; fla 6.0 5.5E+02 0.019 19.5 3.8 32 171-203 30-61 (75)
5 1rh5_B Preprotein translocase 4.7 5.4E+02 0.018 19.5 3.0 26 211-236 32-57 (74)
6 3m92_A Protein YCIN; DUF2498, 4.3 1.5E+02 0.0051 24.2 -0.5 32 51-82 38-69 (107)
7 2kco_A 30S ribosomal protein S 4.1 2.2E+02 0.0074 24.3 0.4 49 32-88 83-132 (133)
8 1l5a_A Amide synthase, VIBH; n 4.1 7E+02 0.024 22.9 4.0 34 144-181 120-153 (436)
9 3mp7_B Preprotein translocase 4.0 6.9E+02 0.024 18.2 3.0 27 210-236 27-53 (61)
10 1q9j_A PAPA5, polyketide synth 4.0 7.5E+02 0.026 22.5 4.1 31 144-178 118-148 (422)
No 1
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=16.38 E-value=1.7e+02 Score=21.07 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=21.8
Q ss_pred CcchHHHHHHHHHHhhhhhHHHhHH------HHHhhh
Q 017843 210 EFDRTRMFRSGLVGFTLHGSLSHYY------YQFCEE 240 (365)
Q Consensus 210 ~~D~~Rt~rfal~G~~~~GPl~H~W------Y~~Ldr 240 (365)
-+|+||++....+..+..+-+-|+- |++||.
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~~ 43 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccC
Confidence 4899998877666666567777765 667763
No 2
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=6.54 E-value=8.1e+02 Score=24.63 Aligned_cols=51 Identities=18% Similarity=0.029 Sum_probs=30.3
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhcCCC--C----ccchhhHHHHhhhhhhhHHHHHHH
Q 017843 220 GLVGFTLHGSLSHYYYQFCEELFPFQ--D----WWVVPAKVAFDQTAWAAAWNSIYY 270 (365)
Q Consensus 220 al~G~~~~GPl~H~WY~~Ldr~fP~~--s----~~~vl~KVllDQlV~sPi~~~~Ff 270 (365)
.+++.+..=|+..|==-.+|..++.+ + +...++..++.+++..|+...+++
T Consensus 131 ~l~~~l~~LP~~~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ 187 (482)
T 4aw6_A 131 TLFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLY 187 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454566532222478887653 2 346777888888888887654444
No 3
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=6.01 E-value=3.3e+02 Score=25.76 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=40.8
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHhhhheeEeeeccccccccHHHHHHHhhHHHHHHHHHHHHhCChh-HHH---HHHHHH
Q 017843 117 GNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVL-AKM---VISGVV 192 (365)
Q Consensus 117 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~~~PLl-TK~---iTSGvL 192 (365)
+-|+.+++.+|+- +|+.+.++... .....+.. -.....+.+.+.|++..+.|...|.. |.+ +..+.+
T Consensus 166 ~~E~~~~y~~Rm~--Gi~~lyAAI~~---~~~~~~~~----~~~~~p~~~~~~W~wLArilN~~p~~~t~t~~~vL~~~L 236 (297)
T 3pev_B 166 KWEDNTSYDERMG--GILSLFAIITR---LQLPQEFI----TTTSHPFPIALSWHILARICNTPLNLITNTHFVILGSWW 236 (297)
T ss_dssp CBCCHHHHHHHHH--HHHHHHHHHHH---SCCCTTTT----TTSCCSSCTHHHHHHHHHHHTSCGGGCCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHH--HHHHHHHHHHh---CcCccccc----ccCCCCCCchHHHHHHHHHhCCCHHhhcccHHHHHHHHH
Confidence 4578889999984 34444444432 22211110 11112445667778888888888874 333 444444
Q ss_pred HHHHHHHHHhH
Q 017843 193 YSLGDWIAQCF 203 (365)
Q Consensus 193 ~~lGDliAQ~i 203 (365)
=.+|.-+.|.+
T Consensus 237 e~ag~~l~~~Y 247 (297)
T 3pev_B 237 DAAAVQFLQAY 247 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=5.97 E-value=5.5e+02 Score=19.53 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHhH
Q 017843 171 TAYEEALKTNPVLAKMVISGVVYSLGDWIAQCF 203 (365)
Q Consensus 171 ~~Y~~~L~~~PLlTK~iTSGvL~~lGDliAQ~i 203 (365)
.+-++..-|||..+=++. .+.+.+|+...|++
T Consensus 30 ~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 30 QRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred HHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 445777889999999998 88889999888874
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=4.72 E-value=5.4e+02 Score=19.52 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHhhhhhHHHhHHHH
Q 017843 211 FDRTRMFRSGLVGFTLHGSLSHYYYQ 236 (365)
Q Consensus 211 ~D~~Rt~rfal~G~~~~GPl~H~WY~ 236 (365)
=++.+.++.+..|+++.|-+.+.-+-
T Consensus 32 ~EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 32 DEYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999888766553
No 6
>3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A}
Probab=4.27 E-value=1.5e+02 Score=24.22 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=27.3
Q ss_pred eeehhcccccccccccCCCcccccCCceeeec
Q 017843 51 VVNSVVNEELDVLPVQSQDLTDMQEGVVVGRE 82 (365)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (365)
..|.+++|--|.+.+--+++.+|.+||++-+-
T Consensus 38 ~AN~iI~eHeDyi~GM~A~~Veqk~~VLVFkG 69 (107)
T 3m92_A 38 EANKIIREHEDTLAGIEATGVTQRNGVLVFTG 69 (107)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSSCEEEEE
T ss_pred HHHHHHHHhHHHhccccccceeeeCCEEEEec
Confidence 35678889999999999999999999998543
No 7
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}
Probab=4.14 E-value=2.2e+02 Score=24.26 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=28.2
Q ss_pred cCCCCcccccccccccccceeehhcccccccccccCCCcccccCCceee-eccCcccc
Q 017843 32 KLSQNPNFSRNKQRKLNSWVVNSVVNEELDVLPVQSQDLTDMQEGVVVG-REEDGELA 88 (365)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (365)
.+|+|+-|.|.+-. +-++++.-|+..+-+-|. .-|+|.+-. -.|+.||+
T Consensus 83 ~Npsn~~yvR~n~i-----tKGaII~~~lG~A~VtSR---PGQdG~vnavlleg~el~ 132 (133)
T 2kco_A 83 ETPANKELARRGII-----IRGAKIRTEAGLAVVTSR---PGQDGVINAVLLKNESQR 132 (133)
T ss_dssp SCCTTHHHHTTTCC-----CTTCEEEESSSEEEEEEE---ECTTSBEEEEECSSCCCC
T ss_pred ECCCChhheecccE-----eeeeEEEEeCceEEEecC---CCCcceEEEEEEeccccc
Confidence 46788888886544 556667666655444332 235665544 34555554
No 8
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=4.12 E-value=7e+02 Score=22.92 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=25.7
Q ss_pred eeEeeeccccccccHHHHHHHhhHHHHHHHHHHHHhCC
Q 017843 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNP 181 (365)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~~~P 181 (365)
=+++++|=+..||++.-+++ ++...|.......|
T Consensus 120 l~~~~HH~i~Dg~S~~~l~~----~l~~~Y~~~~~g~~ 153 (436)
T 1l5a_A 120 IYTRAHHIVLDGYGMMLFEQ----RLSQHYQSLLSGQT 153 (436)
T ss_dssp EEEEEETTTCCHHHHHHHHH----HHHHHHHHHHHTCC
T ss_pred EEEeehhheecHhHHHHHHH----HHHHHHHHHhcCCC
Confidence 35899999999999988774 55667877655443
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=4.00 E-value=6.9e+02 Score=18.16 Aligned_cols=27 Identities=15% Similarity=0.020 Sum_probs=21.9
Q ss_pred CcchHHHHHHHHHHhhhhhHHHhHHHH
Q 017843 210 EFDRTRMFRSGLVGFTLHGSLSHYYYQ 236 (365)
Q Consensus 210 ~~D~~Rt~rfal~G~~~~GPl~H~WY~ 236 (365)
.=++.+.++....|+++.|-+.+.-+-
T Consensus 27 ~~Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 27 WATYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999988866553
No 10
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=3.98 E-value=7.5e+02 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=24.2
Q ss_pred eeEeeeccccccccHHHHHHHhhHHHHHHHHHHHH
Q 017843 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALK 178 (365)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~ 178 (365)
=+++++|=+..||++.-++ .++...|.....
T Consensus 118 l~l~~hH~i~Dg~S~~~l~----~~l~~~Y~~~~~ 148 (422)
T 1q9j_A 118 LTLYLHHCMADGHHGAVLV----DELFSRYTDAVT 148 (422)
T ss_dssp EEEEEEGGGCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred EEEEeceEEEchhhHHHHH----HHHHHHHHHhhc
Confidence 3689999999999997666 456677877654
Done!